Query 041372
Match_columns 564
No_of_seqs 281 out of 2445
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 06:26:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041372.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041372hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05562 Peptidases_S53_like Pe 100.0 1.3E-40 2.9E-45 335.0 22.1 227 16-419 41-274 (275)
2 cd07497 Peptidases_S8_14 Pepti 100.0 1.1E-39 2.4E-44 333.2 20.7 225 18-383 51-311 (311)
3 PTZ00262 subtilisin-like prote 100.0 5.4E-40 1.2E-44 352.8 19.2 227 17-424 372-618 (639)
4 cd07478 Peptidases_S8_CspA-lik 100.0 9.1E-39 2E-43 342.5 22.1 340 18-410 73-455 (455)
5 cd04857 Peptidases_S8_Tripepti 100.0 1.4E-38 3E-43 331.8 21.8 216 19-386 181-412 (412)
6 cd07479 Peptidases_S8_SKI-1_li 100.0 2.8E-38 6.1E-43 315.6 21.4 199 17-387 39-254 (255)
7 cd04852 Peptidases_S8_3 Peptid 100.0 2.9E-38 6.4E-43 324.6 21.1 133 15-149 100-234 (307)
8 cd05561 Peptidases_S8_4 Peptid 100.0 1.2E-37 2.7E-42 308.1 22.7 203 18-410 31-239 (239)
9 cd07475 Peptidases_S8_C5a_Pept 100.0 2.4E-37 5.2E-42 323.3 24.0 255 19-419 78-346 (346)
10 cd07483 Peptidases_S8_Subtilis 100.0 2.3E-37 4.9E-42 315.1 21.5 212 18-384 80-291 (291)
11 cd07474 Peptidases_S8_subtilis 100.0 1.1E-36 2.4E-41 311.2 24.0 229 19-417 58-295 (295)
12 cd07476 Peptidases_S8_thiazoli 100.0 9.3E-37 2E-41 306.2 21.9 204 17-388 44-254 (267)
13 cd07489 Peptidases_S8_5 Peptid 100.0 1.1E-36 2.4E-41 313.6 22.6 228 17-420 62-299 (312)
14 cd04847 Peptidases_S8_Subtilis 100.0 7.6E-37 1.6E-41 311.8 18.4 216 19-384 34-291 (291)
15 cd07493 Peptidases_S8_9 Peptid 100.0 4.1E-36 9E-41 301.6 20.7 198 20-384 44-261 (261)
16 cd07481 Peptidases_S8_Bacillop 100.0 9.8E-36 2.1E-40 299.4 20.7 198 17-384 46-264 (264)
17 cd07487 Peptidases_S8_1 Peptid 100.0 9.1E-35 2E-39 292.1 22.7 208 17-384 38-264 (264)
18 cd07490 Peptidases_S8_6 Peptid 100.0 2.4E-34 5.2E-39 287.6 21.9 213 17-384 37-254 (254)
19 cd07496 Peptidases_S8_13 Pepti 100.0 2.1E-34 4.5E-39 293.0 21.1 193 19-382 67-285 (285)
20 cd07498 Peptidases_S8_15 Pepti 100.0 3.7E-34 8.1E-39 284.2 20.8 197 18-382 35-242 (242)
21 cd07494 Peptidases_S8_10 Pepti 100.0 2.8E-34 6E-39 292.7 19.8 113 17-152 55-175 (298)
22 cd07485 Peptidases_S8_Fervidol 100.0 8.9E-34 1.9E-38 286.6 21.5 202 18-382 56-273 (273)
23 cd07482 Peptidases_S8_Lantibio 100.0 3.7E-33 8E-38 285.0 21.0 103 18-132 48-157 (294)
24 cd07473 Peptidases_S8_Subtilis 100.0 6.8E-33 1.5E-37 277.9 22.0 196 17-384 57-259 (259)
25 cd07484 Peptidases_S8_Thermita 100.0 1.1E-32 2.3E-37 276.7 22.0 195 18-386 63-259 (260)
26 cd07477 Peptidases_S8_Subtilis 100.0 1.4E-32 3E-37 270.4 22.4 192 17-382 34-229 (229)
27 cd04843 Peptidases_S8_11 Pepti 100.0 5.1E-33 1.1E-37 280.3 18.7 99 19-131 47-153 (277)
28 cd04077 Peptidases_S8_PCSK9_Pr 100.0 1.9E-32 4.1E-37 274.1 20.8 188 19-385 59-255 (255)
29 PF00082 Peptidase_S8: Subtila 100.0 1.1E-33 2.4E-38 286.9 11.8 232 16-419 39-282 (282)
30 cd07480 Peptidases_S8_12 Pepti 100.0 6.2E-32 1.3E-36 276.3 20.0 224 19-415 42-296 (297)
31 cd04842 Peptidases_S8_Kp43_pro 100.0 3.5E-32 7.7E-37 277.7 18.2 217 19-384 50-293 (293)
32 cd07492 Peptidases_S8_8 Peptid 100.0 1.3E-31 2.7E-36 262.6 20.7 184 17-384 38-222 (222)
33 KOG1114 Tripeptidyl peptidase 100.0 9.6E-32 2.1E-36 288.5 20.0 237 22-419 309-557 (1304)
34 cd04059 Peptidases_S8_Protein_ 100.0 9E-32 1.9E-36 275.3 16.6 124 17-150 76-213 (297)
35 cd07491 Peptidases_S8_7 Peptid 100.0 1.8E-31 3.9E-36 264.8 18.1 113 20-150 46-170 (247)
36 cd04848 Peptidases_S8_Autotran 100.0 3.6E-31 7.8E-36 265.9 19.3 202 18-384 41-267 (267)
37 cd07488 Peptidases_S8_2 Peptid 100.0 1.5E-31 3.2E-36 264.7 14.3 115 18-150 32-159 (247)
38 KOG1153 Subtilisin-related pro 100.0 7E-31 1.5E-35 264.4 12.4 187 19-384 253-461 (501)
39 cd00306 Peptidases_S8_S53 Pept 99.9 1E-25 2.3E-30 221.4 21.4 195 18-382 39-241 (241)
40 KOG4266 Subtilisin kexin isozy 99.9 5.6E-25 1.2E-29 227.6 9.3 219 17-419 232-465 (1033)
41 COG1404 AprE Subtilisin-like s 99.8 9.7E-18 2.1E-22 182.5 20.5 200 19-384 179-397 (508)
42 cd04056 Peptidases_S53 Peptida 99.7 1.2E-16 2.6E-21 167.6 13.1 102 50-154 82-199 (361)
43 cd02120 PA_subtilisin_like PA_ 99.2 1.4E-10 3E-15 103.1 12.7 120 159-295 2-125 (126)
44 cd02133 PA_C5a_like PA_C5a_lik 99.1 5E-10 1.1E-14 101.9 11.4 94 220-320 44-141 (143)
45 KOG3526 Subtilisin-like propro 98.9 1.4E-09 3.1E-14 108.3 6.6 115 6-131 187-314 (629)
46 cd04818 PA_subtilisin_1 PA_sub 98.5 1.1E-06 2.4E-11 77.1 10.1 84 207-294 26-116 (118)
47 cd04816 PA_SaNapH_like PA_SaNa 98.5 1E-06 2.2E-11 77.9 9.7 83 208-293 29-119 (122)
48 PF02225 PA: PA domain; Inter 98.4 4E-07 8.7E-12 77.3 5.8 75 209-286 20-101 (101)
49 cd02122 PA_GRAIL_like PA _GRAI 98.3 7.3E-06 1.6E-10 73.8 10.5 86 207-295 43-137 (138)
50 cd00538 PA PA: Protease-associ 98.2 6.1E-06 1.3E-10 72.9 9.4 83 208-293 30-123 (126)
51 cd02127 PA_hPAP21_like PA_hPAP 98.2 1.2E-05 2.5E-10 70.5 10.4 85 208-296 21-116 (118)
52 cd02129 PA_hSPPL_like PA_hSPPL 98.2 8.5E-06 1.9E-10 71.1 9.2 79 208-289 30-115 (120)
53 PF06280 DUF1034: Fn3-like dom 98.2 2.5E-05 5.3E-10 67.9 11.1 87 471-558 2-112 (112)
54 cd02126 PA_EDEM3_like PA_EDEM3 98.1 1.6E-05 3.5E-10 70.6 9.6 82 208-293 27-123 (126)
55 cd02130 PA_ScAPY_like PA_ScAPY 98.1 1.9E-05 4.1E-10 69.7 9.9 83 209-295 32-121 (122)
56 cd02132 PA_GO-like PA_GO-like: 98.1 1.8E-05 4E-10 71.5 9.7 80 208-293 48-136 (139)
57 cd02125 PA_VSR PA_VSR: Proteas 98.1 3E-05 6.5E-10 68.8 9.9 85 208-294 22-125 (127)
58 cd04813 PA_1 PA_1: Protease-as 98.0 4.8E-05 1E-09 66.5 9.2 77 207-288 26-111 (117)
59 cd02124 PA_PoS1_like PA_PoS1_l 97.9 6.2E-05 1.4E-09 67.0 9.9 84 207-294 40-127 (129)
60 cd04817 PA_VapT_like PA_VapT_l 97.9 6.8E-05 1.5E-09 67.3 9.0 68 220-289 53-134 (139)
61 cd02123 PA_C_RZF_like PA_C-RZF 97.8 0.00013 2.7E-09 67.1 9.5 81 208-291 50-142 (153)
62 cd04819 PA_2 PA_2: Protease-as 97.3 0.0018 3.9E-08 57.5 9.4 71 220-290 41-121 (127)
63 COG4934 Predicted protease [Po 96.8 0.0082 1.8E-07 69.9 11.1 94 52-148 289-395 (1174)
64 cd04815 PA_M28_2 PA_M28_2: Pro 96.1 0.019 4.2E-07 51.4 7.4 72 220-293 36-131 (134)
65 cd02128 PA_TfR PA_TfR: Proteas 95.5 0.032 6.9E-07 52.4 6.3 67 220-288 52-155 (183)
66 KOG2442 Uncharacterized conser 95.0 0.087 1.9E-06 55.6 8.2 76 220-297 92-176 (541)
67 cd04822 PA_M28_1_3 PA_M28_1_3: 94.3 0.18 3.9E-06 46.0 7.5 53 209-262 34-102 (151)
68 PF10633 NPCBM_assoc: NPCBM-as 93.9 0.22 4.9E-06 39.9 6.7 56 478-533 6-62 (78)
69 PF14874 PapD-like: Flagellar- 93.9 2.6 5.6E-05 35.4 13.6 80 478-560 21-100 (102)
70 cd04820 PA_M28_1_1 PA_M28_1_1: 93.7 0.17 3.7E-06 45.4 6.1 52 209-261 36-97 (137)
71 cd04814 PA_M28_1 PA_M28_1: Pro 93.2 0.2 4.3E-06 45.2 5.8 51 209-260 34-100 (142)
72 cd02131 PA_hNAALADL2_like PA_h 92.5 0.2 4.3E-06 45.4 4.7 40 220-261 37-76 (153)
73 PF11614 FixG_C: IG-like fold 90.1 3 6.5E-05 36.2 9.7 54 480-534 34-87 (118)
74 cd02121 PA_GCPII_like PA_GCPII 89.1 0.61 1.3E-05 45.4 4.9 39 220-260 68-106 (220)
75 KOG4628 Predicted E3 ubiquitin 83.4 4.7 0.0001 41.7 8.1 81 208-290 62-151 (348)
76 KOG3920 Uncharacterized conser 82.1 0.88 1.9E-05 41.0 1.9 86 207-296 73-171 (193)
77 PF00345 PapD_N: Pili and flag 81.3 18 0.00038 31.4 10.1 67 479-547 16-89 (122)
78 cd04821 PA_M28_1_2 PA_M28_1_2: 74.2 4.9 0.00011 37.0 4.4 41 220-260 46-103 (157)
79 COG1470 Predicted membrane pro 73.5 12 0.00027 40.0 7.6 62 478-539 398-461 (513)
80 smart00635 BID_2 Bacterial Ig- 66.2 20 0.00043 28.7 6.0 39 506-549 4-42 (81)
81 TIGR02745 ccoG_rdxA_fixG cytoc 64.5 28 0.00061 37.6 8.4 52 480-532 349-400 (434)
82 PF06030 DUF916: Bacterial pro 64.1 77 0.0017 27.7 9.7 69 477-547 27-119 (121)
83 PF00635 Motile_Sperm: MSP (Ma 63.7 47 0.001 27.8 8.2 52 478-532 19-70 (109)
84 PF12690 BsuPI: Intracellular 56.0 64 0.0014 26.1 7.2 54 479-533 2-72 (82)
85 KOG3525 Subtilisin-like propro 54.9 6.6 0.00014 42.3 1.6 73 345-418 251-323 (431)
86 PF02845 CUE: CUE domain; Int 53.5 14 0.00029 25.7 2.5 25 360-384 5-29 (42)
87 PF07610 DUF1573: Protein of u 51.0 57 0.0012 23.0 5.5 44 483-529 2-45 (45)
88 PF08821 CGGC: CGGC domain; I 50.5 99 0.0022 26.4 7.8 72 52-125 31-104 (107)
89 COG1470 Predicted membrane pro 50.0 2.2E+02 0.0048 30.9 11.7 55 478-533 285-345 (513)
90 PLN03080 Probable beta-xylosid 49.9 60 0.0013 38.0 8.5 77 478-556 685-778 (779)
91 PF08260 Kinin: Insect kinin p 46.5 8.8 0.00019 16.9 0.4 6 313-318 3-8 (8)
92 KOG2733 Uncharacterized membra 41.9 26 0.00057 36.4 3.5 71 52-131 78-148 (423)
93 PF07718 Coatamer_beta_C: Coat 41.7 98 0.0021 27.8 6.6 49 497-547 90-138 (140)
94 PF13195 DUF4011: Protein of u 36.2 38 0.00082 31.7 3.4 25 540-564 121-148 (176)
95 PF05753 TRAP_beta: Translocon 35.1 2.7E+02 0.0058 26.2 8.9 70 476-548 37-114 (181)
96 PF09244 DUF1964: Domain of un 34.2 63 0.0014 24.5 3.5 40 513-552 15-58 (68)
97 PF04255 DUF433: Protein of un 34.2 34 0.00075 25.4 2.2 36 345-380 13-54 (56)
98 smart00546 CUE Domain that may 32.5 65 0.0014 22.3 3.3 25 359-383 5-29 (43)
99 PRK15098 beta-D-glucoside gluc 31.5 1.5E+02 0.0031 34.8 7.9 70 460-532 641-728 (765)
100 cd08523 Reeler_cohesin_like Do 30.0 3.9E+02 0.0084 23.6 10.9 21 513-533 74-94 (124)
101 PF07705 CARDB: CARDB; InterP 29.3 3E+02 0.0065 22.0 9.6 53 476-532 18-72 (101)
102 PF11611 DUF4352: Domain of un 28.5 3.6E+02 0.0078 22.7 8.4 70 479-549 38-121 (123)
103 COG1570 XseA Exonuclease VII, 28.5 1.8E+02 0.0038 31.4 7.1 75 54-131 159-236 (440)
104 PF13940 Ldr_toxin: Toxin Ldr, 28.2 33 0.00072 22.6 1.0 13 351-363 14-26 (35)
105 PF02368 Big_2: Bacterial Ig-l 25.4 37 0.0008 26.9 1.2 37 506-548 4-40 (79)
106 PRK15019 CsdA-binding activato 25.0 71 0.0015 29.1 3.0 31 346-377 79-109 (147)
107 TIGR03391 FeS_syn_CsdE cystein 24.2 75 0.0016 28.5 3.0 31 346-377 74-104 (138)
108 PRK13203 ureB urease subunit b 20.8 2.7E+02 0.0059 23.6 5.3 44 477-528 18-82 (102)
109 PRK09296 cysteine desufuration 20.5 98 0.0021 27.8 3.0 31 346-377 69-99 (138)
110 cd00407 Urease_beta Urease bet 20.0 3.2E+02 0.007 23.1 5.6 44 477-528 18-82 (101)
No 1
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=1.3e-40 Score=335.04 Aligned_cols=227 Identities=21% Similarity=0.226 Sum_probs=173.8
Q ss_pred CCCCCCCCCChhhHHHhhcccccCCcccccccCcceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHHHcCCcEEEEcc
Q 041372 16 FRSARDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWFNLCYDADILSALDDAINDVVDILSLSF 95 (564)
Q Consensus 16 ~~sp~D~~GHGTHvAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ykv~~~~~~~~~di~~Ai~~Ai~dgvdVIn~Sl 95 (564)
...+.|..||||||||||+ ||||+|+|+.+|+. ...+++++||+||++.|+|||||||
T Consensus 41 ~~~~~d~~gHGT~vAgii~------------------GvAP~a~l~~~~~~----~~~~~i~~ai~~a~~~g~~Vin~S~ 98 (275)
T cd05562 41 LDGGSGGGDEGRAMLEIIH------------------DIAPGAELAFHTAG----GGELDFAAAIRALAAAGADIIVDDI 98 (275)
T ss_pred cCCCCCCCchHHHHHHHHh------------------ccCCCCEEEEEecC----CCHHHHHHHHHHHHHcCCCEEEecc
Confidence 3466789999999999984 78999999999873 3578899999999999999999999
Q ss_pred CCCCCCCCCccchhhHHHHHHHhC-CcEEEEccCCCCCCC--CccccCCceEEeeeeccCCceeeEEEecCCeEEeceec
Q 041372 96 GPSPPQPIYFEDSTSIGTFHAFQK-GILVSASAGNSIFPG--TATNVAPGILTVAASSVDRKSYSNIYLGNSKILKGSSL 172 (564)
Q Consensus 96 G~~~~~~~~~~~~~~~~~~~a~~~-Gv~vV~AAGN~g~~~--~~~~~ap~vitVga~~~~~~~~~~~~lg~~~~~~g~~~ 172 (564)
|.... +.+....+..++.++.++ |++||+||||+|... ..+..+|++|+|||.+.........
T Consensus 99 g~~~~-~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s------------- 164 (275)
T cd05562 99 GYLNE-PFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGS------------- 164 (275)
T ss_pred cccCC-CcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccc-------------
Confidence 97542 212344677788888887 999999999998533 3457889999999976432210000
Q ss_pred CCCCCCceeEEEEcchhhHHhhhhhcCcccccccccCCCCCCCCCcCCCcCceEEEEEecCCCchhHHHHHHHHhcCceE
Q 041372 173 NPLETKTFYGLIAGSTAAAQLQQQMQGSVSGYSTLSGFCKNNTLDHHTLIKGKIVVCTIEASTDNRREKCIFVRESGGVG 252 (564)
Q Consensus 173 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gkIv~~~~~~~~~~~~~~~~~~~~~Ga~g 252 (564)
|. ..
T Consensus 165 --------------------------------------~~----~~---------------------------------- 168 (275)
T cd05562 165 --------------------------------------DP----AP---------------------------------- 168 (275)
T ss_pred --------------------------------------cc----cc----------------------------------
Confidence 00 00
Q ss_pred EEEEcCCCCCCCcceecceEEECHHhHHHHHHHHhcCCCcEEEEccCeeeecccCCCcccccccCCCCC---CCCcEEcC
Q 041372 253 MILIDPNAKDIGFQFVIPATLIGQEEAQELQAYMTAGKNPIARIYPPQTILKTKPAPEMAAFSSMGPNI---ITADIIRS 329 (564)
Q Consensus 253 ~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~va~FSS~GP~~---~kPdI~aP 329 (564)
.........|++|||+. .||||.||
T Consensus 169 ----------------------------------------------------~~~~s~~~~~~~~~p~~~~~~~~di~Ap 196 (275)
T cd05562 169 ----------------------------------------------------GGTPSSFDPVGIRLPTPEVRQKPDVTAP 196 (275)
T ss_pred ----------------------------------------------------CCCcccccCCcccCcCCCCCcCCeEEcC
Confidence 00000124578888854 89999999
Q ss_pred CCc-ccccccCCcceEEEeccccchhhHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCcccccCCCCCCCCCCCCCC
Q 041372 330 PVA-IEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPSWSPAAIMSAIMTTATVLNNNQQQIRRDPNGSQTTPFDNG 408 (564)
Q Consensus 330 g~~-i~s~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~IksaL~~TA~~~~~~~~~i~~~~~~~~~~~~~~G 408 (564)
|.. +.+... +..|..++|||||||||||++|||+|++|+|++.|||++|++||+++.. +.....||
T Consensus 197 gg~~~~~~~~-~~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~------------~g~d~~~G 263 (275)
T cd05562 197 DGVNGTVDGD-GDGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGE------------PGYDNASG 263 (275)
T ss_pred CcccccCCCc-CCceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC------------CCCCCCcC
Confidence 753 344333 4589999999999999999999999999999999999999999987642 12345899
Q ss_pred CCCccccccCC
Q 041372 409 SGHINQVAAMN 419 (564)
Q Consensus 409 aG~Vn~~~A~~ 419 (564)
+|+||+.+|++
T Consensus 264 ~G~vda~~Av~ 274 (275)
T cd05562 264 SGLVDADRAVA 274 (275)
T ss_pred cCcccHHHHhh
Confidence 99999999986
No 2
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.1e-39 Score=333.24 Aligned_cols=225 Identities=26% Similarity=0.243 Sum_probs=156.6
Q ss_pred CCCCCCCChhhHHHhhcccccCCccccccc-CcceeeecCCCeEEEEEEecCCC-CCHHHHHH-------HHHH--HHHc
Q 041372 18 SARDSDGHGTHTASTIAGAVVENVSLFGMA-RGTARGGAPSARLAIYKACWFNL-CYDADILS-------ALDD--AIND 86 (564)
Q Consensus 18 sp~D~~GHGTHvAgiaaG~~~~~~~~~G~~-~g~~~GvAP~A~l~~ykv~~~~~-~~~~di~~-------Ai~~--Ai~d 86 (564)
.+.|++||||||||||||......+.+|+. ...+.||||+|+|+.+|+|.... +....+.+ +++| +.++
T Consensus 51 ~~~D~~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 130 (311)
T cd07497 51 IMYDFFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGP 130 (311)
T ss_pred CCCCccccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCC
Confidence 468999999999999999864332222221 12468999999999999986432 32333333 3333 3468
Q ss_pred CCcEEEEccCCCCCCCCC---ccchhhHHHHH-HHhCCcEEEEccCCCCCC---CCccccCCceEEeeeeccCCceeeEE
Q 041372 87 VVDILSLSFGPSPPQPIY---FEDSTSIGTFH-AFQKGILVSASAGNSIFP---GTATNVAPGILTVAASSVDRKSYSNI 159 (564)
Q Consensus 87 gvdVIn~SlG~~~~~~~~---~~~~~~~~~~~-a~~~Gv~vV~AAGN~g~~---~~~~~~ap~vitVga~~~~~~~~~~~ 159 (564)
++||||||||........ ..+..+...+. +.++||++|+||||+|.. ...+..+|++|+|||++.....+
T Consensus 131 ~~~VIN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~--- 207 (311)
T cd07497 131 RVDVISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRP--- 207 (311)
T ss_pred CceEEEecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccc---
Confidence 999999999975321100 11223333333 247999999999999832 23456789999999975311100
Q ss_pred EecCCeEEeceecCCCCCCceeEEEEcchhhHHhhhhhcCcccccccccCCCCCCCCCcCCCcCceEEEEEecCCCchhH
Q 041372 160 YLGNSKILKGSSLNPLETKTFYGLIAGSTAAAQLQQQMQGSVSGYSTLSGFCKNNTLDHHTLIKGKIVVCTIEASTDNRR 239 (564)
Q Consensus 160 ~lg~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gkIv~~~~~~~~~~~~ 239 (564)
.+.+. .
T Consensus 208 --------------------~~~~~-------------------------------------------~----------- 213 (311)
T cd07497 208 --------------------FYLFG-------------------------------------------Y----------- 213 (311)
T ss_pred --------------------hhhhc-------------------------------------------c-----------
Confidence 00000 0
Q ss_pred HHHHHHHhcCceEEEEEcCCCCCCCcceecceEEECHHhHHHHHHHHhcCCCcEEEEccCeeeecccCCCcccccccCCC
Q 041372 240 EKCIFVRESGGVGMILIDPNAKDIGFQFVIPATLIGQEEAQELQAYMTAGKNPIARIYPPQTILKTKPAPEMAAFSSMGP 319 (564)
Q Consensus 240 ~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~va~FSS~GP 319 (564)
.......++.||||||
T Consensus 214 ----------------------------------------------------------------~~~~~~~~~~fSs~Gp 229 (311)
T cd07497 214 ----------------------------------------------------------------LPGGSGDVVSWSSRGP 229 (311)
T ss_pred ----------------------------------------------------------------ccCCCCCccccccCCC
Confidence 0011345789999999
Q ss_pred C---CCCCcEEcCCCcccccccC---------CcceEEEeccccchhhHHHHHHHHHhhCC------CCCHHHHHHHHHh
Q 041372 320 N---IITADIIRSPVAIEATAEQ---------SVDYNIISGTSMSCPHVSAVAAIIKSHHP------SWSPAAIMSAIMT 381 (564)
Q Consensus 320 ~---~~kPdI~aPg~~i~s~~~~---------~~~y~~~SGTSMAaP~VAG~aALl~q~~P------~~sp~~IksaL~~ 381 (564)
+ .+||||.|||.+++++.+. ...|..++|||||||||||++|||+|++| .++|++||.+|++
T Consensus 230 ~~~g~~kPdv~ApG~~i~s~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~ 309 (311)
T cd07497 230 SIAGDPKPDLAAIGAFAWAPGRVLDSGGALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMS 309 (311)
T ss_pred CcccCCCCceeccCcceEeecccCCCCcccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHh
Confidence 7 4899999999998876542 23699999999999999999999999886 6899999999999
Q ss_pred cc
Q 041372 382 TA 383 (564)
Q Consensus 382 TA 383 (564)
||
T Consensus 310 tA 311 (311)
T cd07497 310 TA 311 (311)
T ss_pred cC
Confidence 97
No 3
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=5.4e-40 Score=352.79 Aligned_cols=227 Identities=22% Similarity=0.243 Sum_probs=169.9
Q ss_pred CCCCCCCCChhhHHHhhcccccCCcccccccCcceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHHcCCcEEEEcc
Q 041372 17 RSARDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWFNL-CYDADILSALDDAINDVVDILSLSF 95 (564)
Q Consensus 17 ~sp~D~~GHGTHvAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ykv~~~~~-~~~~di~~Ai~~Ai~dgvdVIn~Sl 95 (564)
.+|.|+.||||||||||||...++. | +.||||+|+|+.+|+|...+ +..+++++||+||++.|++||||||
T Consensus 372 ~~P~D~~GHGTHVAGIIAA~gnN~~---G-----i~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~VINmSl 443 (639)
T PTZ00262 372 GGPMDDNYHGTHVSGIISAIGNNNI---G-----IVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHMINGSF 443 (639)
T ss_pred CCCCCCCCcchHHHHHHhccccCCC---c-----eeeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCEEEecc
Confidence 4689999999999999999864421 2 37999999999999998654 6788999999999999999999999
Q ss_pred CCCCCCCCCccchhhHHHHHHHhCCcEEEEccCCCCCCCCcc---------------c----cCCceEEeeeeccCCcee
Q 041372 96 GPSPPQPIYFEDSTSIGTFHAFQKGILVSASAGNSIFPGTAT---------------N----VAPGILTVAASSVDRKSY 156 (564)
Q Consensus 96 G~~~~~~~~~~~~~~~~~~~a~~~Gv~vV~AAGN~g~~~~~~---------------~----~ap~vitVga~~~~~~~~ 156 (564)
|... ....+..++.+|.++|++||+||||++...... . ..|+||+|||...+.
T Consensus 444 G~~~-----~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~d~--- 515 (639)
T PTZ00262 444 SFDE-----YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIKDK--- 515 (639)
T ss_pred ccCC-----ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeeccCCC---
Confidence 9753 234677788899999999999999998321100 0 012222222211000
Q ss_pred eEEEecCCeEEeceecCCCCCCceeEEEEcchhhHHhhhhhcCcccccccccCCCCCCCCCcCCCcCceEEEEEecCCCc
Q 041372 157 SNIYLGNSKILKGSSLNPLETKTFYGLIAGSTAAAQLQQQMQGSVSGYSTLSGFCKNNTLDHHTLIKGKIVVCTIEASTD 236 (564)
Q Consensus 157 ~~~~lg~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gkIv~~~~~~~~~ 236 (564)
T Consensus 516 -------------------------------------------------------------------------------- 515 (639)
T PTZ00262 516 -------------------------------------------------------------------------------- 515 (639)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHhcCceEEEEEcCCCCCCCcceecceEEECHHhHHHHHHHHhcCCCcEEEEccCeeeecccCCCccccccc
Q 041372 237 NRREKCIFVRESGGVGMILIDPNAKDIGFQFVIPATLIGQEEAQELQAYMTAGKNPIARIYPPQTILKTKPAPEMAAFSS 316 (564)
Q Consensus 237 ~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~va~FSS 316 (564)
...-..+.||.
T Consensus 516 ---------------------------------------------------------------------~~~~s~s~~Sn 526 (639)
T PTZ00262 516 ---------------------------------------------------------------------NNQYSLSPNSF 526 (639)
T ss_pred ---------------------------------------------------------------------CCccccccccc
Confidence 00001234455
Q ss_pred CCCCCCCCcEEcCCCcccccccCCcceEEEeccccchhhHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCcccccCC
Q 041372 317 MGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPSWSPAAIMSAIMTTATVLNNNQQQIRRD 396 (564)
Q Consensus 317 ~GP~~~kPdI~aPg~~i~s~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~IksaL~~TA~~~~~~~~~i~~~ 396 (564)
+|. .++||+|||+.|+++.+. +.|..++|||||||||||+||||++.+|+|++.||+++|+.||.++...
T Consensus 527 yg~--~~VDIaAPG~dI~St~p~-g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~~------- 596 (639)
T PTZ00262 527 YSA--KYCQLAAPGTNIYSTFPK-NSYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIVQLPSL------- 596 (639)
T ss_pred CCC--CcceEEeCCCCeeeccCC-CceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCCC-------
Confidence 543 246999999999998876 4899999999999999999999999999999999999999999865421
Q ss_pred CCCCCCCCCCCCCCCccccccCCCCeee
Q 041372 397 PNGSQTTPFDNGSGHINQVAAMNPGLIY 424 (564)
Q Consensus 397 ~~~~~~~~~~~GaG~Vn~~~A~~pglv~ 424 (564)
...+.+ +|+||+.+|++-.+-+
T Consensus 597 -----~n~~~w-gG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 597 -----KNKVKW-GGYLDIHHAVNLAIAS 618 (639)
T ss_pred -----CCcccc-CcEEcHHHHHHHHHhc
Confidence 112233 3999999999865433
No 4
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=9.1e-39 Score=342.48 Aligned_cols=340 Identities=19% Similarity=0.139 Sum_probs=204.5
Q ss_pred CCCCCCCChhhHHHhhcccccCCcccccccCcceeeecCCCeEEEEEEecCCC-----------CCHHHHHHHHHHHHHc
Q 041372 18 SARDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWFNL-----------CYDADILSALDDAIND 86 (564)
Q Consensus 18 sp~D~~GHGTHvAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ykv~~~~~-----------~~~~di~~Ai~~Ai~d 86 (564)
..+|+.||||||||||||+..++ ..+.||||+|+|+++|++...+ +...+|++|++|+++.
T Consensus 73 ~~~D~~GHGThvAGIiag~~~~~--------~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~ 144 (455)
T cd07478 73 PSRDENGHGTHVAGIAAGNGDNN--------PDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDK 144 (455)
T ss_pred cCCCCCCchHHHHHHHhcCCCCC--------CCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHH
Confidence 45799999999999999997542 2348999999999999987654 4578999999999875
Q ss_pred C-----CcEEEEccCCCCCCCCCccchhhHHHHHHHhC-CcEEEEccCCCCCC-CCccc-----cCCce--EEeeeeccC
Q 041372 87 V-----VDILSLSFGPSPPQPIYFEDSTSIGTFHAFQK-GILVSASAGNSIFP-GTATN-----VAPGI--LTVAASSVD 152 (564)
Q Consensus 87 g-----vdVIn~SlG~~~~~~~~~~~~~~~~~~~a~~~-Gv~vV~AAGN~g~~-~~~~~-----~ap~v--itVga~~~~ 152 (564)
+ +.|||||||...+. +...+.++.++..+.++ |++||+||||+|.. ..... ...-. +.|+. .+
T Consensus 145 a~~~~~p~VInlSlG~~~g~-~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~--~~ 221 (455)
T cd07478 145 ALELNKPLVINISLGTNFGS-HDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGE--GE 221 (455)
T ss_pred HHHhCCCeEEEEccCcCCCC-CCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECC--CC
Confidence 3 56999999986542 34567888888887776 99999999999842 22111 00000 12221 11
Q ss_pred CceeeEEEecCCeEEeceecCCCCCCceeEEEEcchhhHHhhhhhcCcc---cccccccCCCCCCC-CCcCCCcCceEEE
Q 041372 153 RKSYSNIYLGNSKILKGSSLNPLETKTFYGLIAGSTAAAQLQQQMQGSV---SGYSTLSGFCKNNT-LDHHTLIKGKIVV 228 (564)
Q Consensus 153 ~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~c~~~~-~~~~~~~~gkIv~ 228 (564)
..+.-.+.......+ ...++.+............+.. .........|-... .++ ..-...|.+
T Consensus 222 ~~~~~eiW~~~~d~~------------~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v~y~~~~~-~~g~~~i~i 288 (455)
T cd07478 222 KGFNLEIWGDFPDRF------------SVSIISPSGESSGRINPGIGGSESYKFVFEGTTVYVYYYLPEP-YTGDQLIFI 288 (455)
T ss_pred cceEEEEecCCCCEE------------EEEEECCCCCccCccCcCCCcceeEEEEECCeEEEEEEcCCCC-CCCCeEEEE
Confidence 111111111100000 0111111000000000000000 00000000111100 011 111111222
Q ss_pred EEecCCCchhHHHHHHHHhcCceEEEEEcCCCCCCCcceecceEEECHHhHHHHHHHHhcCCCcEEEEcc----Ceeeec
Q 041372 229 CTIEASTDNRREKCIFVRESGGVGMILIDPNAKDIGFQFVIPATLIGQEEAQELQAYMTAGKNPIARIYP----PQTILK 304 (564)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~----~~~~~~ 304 (564)
. + .-...|.+-+.+......+..++.|+|...+...+ ..++.+....+.++-. ..++..
T Consensus 289 ~-~------------~~~~~GiW~i~~~~~~~~~g~~~~Wlp~~~~~~~~----t~f~~~~~~~tit~Pa~~~~vitVga 351 (455)
T cd07478 289 R-F------------KNIKPGIWKIRLTGVSITDGRFDAWLPSRGLLSEN----TRFLEPDPYTTLTIPGTARSVITVGA 351 (455)
T ss_pred E-c------------cCCCccceEEEEEeccCCCceEEEEecCcCcCCCC----CEeecCCCCceEecCCCCCCcEEEEE
Confidence 1 1 11235778888887766666677788865444332 1233344433333321 123333
Q ss_pred ccC-CCcccccccCCCCC---CCCcEEcCCCcccccccCCcceEEEeccccchhhHHHHHHHHHhhC------CCCCHHH
Q 041372 305 TKP-APEMAAFSSMGPNI---ITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHH------PSWSPAA 374 (564)
Q Consensus 305 ~~~-~~~va~FSS~GP~~---~kPdI~aPg~~i~s~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~------P~~sp~~ 374 (564)
... ...++.||||||+. +||||+|||++|+++.+. ..|..++|||||||||||++|||+|.+ |.|++++
T Consensus 352 ~~~~~~~~~~~Ss~G~~~~~~~kpdi~APG~~i~s~~~~-~~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ 430 (455)
T cd07478 352 YNQNNNSIAIFSGRGPTRDGRIKPDIAAPGVNILTASPG-GGYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEK 430 (455)
T ss_pred EeCCCCcccCccCCCcCCCCCcCceEEecCCCEEEeecC-CcEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHH
Confidence 332 34689999999974 899999999999998875 489999999999999999999999865 5679999
Q ss_pred HHHHHHhccccccCCcccccCCCCCCCCCCCCCCCC
Q 041372 375 IMSAIMTTATVLNNNQQQIRRDPNGSQTTPFDNGSG 410 (564)
Q Consensus 375 IksaL~~TA~~~~~~~~~i~~~~~~~~~~~~~~GaG 410 (564)
||++|+.||+++. +..++..+||+|
T Consensus 431 ik~~L~~tA~~~~-----------~~~~pn~~~GyG 455 (455)
T cd07478 431 IKTYLIRGARRRP-----------GDEYPNPEWGYG 455 (455)
T ss_pred HHHHHHHhCccCC-----------CCCCCCCCCCCC
Confidence 9999999998764 223456789988
No 5
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=1.4e-38 Score=331.75 Aligned_cols=216 Identities=24% Similarity=0.280 Sum_probs=158.5
Q ss_pred CCCCCCChhhHHHhhcccccCCcccccccCcceeeecCCCeEEEEEEecCCC---CCHHHHHHHHHHHHHcCCcEEEEcc
Q 041372 19 ARDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWFNL---CYDADILSALDDAINDVVDILSLSF 95 (564)
Q Consensus 19 p~D~~GHGTHvAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ykv~~~~~---~~~~di~~Ai~~Ai~dgvdVIn~Sl 95 (564)
-.|+.||||||||||||+..++ ..+.||||+|+|+.+|++.... +...++++|+++|++.|+|||||||
T Consensus 181 ~~d~~gHGThVAGIIAg~~~~~--------~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~Sl 252 (412)
T cd04857 181 VTDSGAHGTHVAGIAAAHFPEE--------PERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSY 252 (412)
T ss_pred CCCCCCCHHHHHHHHhCCCCCC--------CceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecC
Confidence 3588999999999999986332 2348999999999999986432 2346799999999999999999999
Q ss_pred CCCCCCCCCccchhhHHHH-HHHhCCcEEEEccCCCCCC-CCc--c-ccCCceEEeeeeccCCceeeEEEecCCeEEece
Q 041372 96 GPSPPQPIYFEDSTSIGTF-HAFQKGILVSASAGNSIFP-GTA--T-NVAPGILTVAASSVDRKSYSNIYLGNSKILKGS 170 (564)
Q Consensus 96 G~~~~~~~~~~~~~~~~~~-~a~~~Gv~vV~AAGN~g~~-~~~--~-~~ap~vitVga~~~~~~~~~~~~lg~~~~~~g~ 170 (564)
|.....+ .. ..+...+. .+.++||++|+||||+|.. .++ + +.++.+|+|||........
T Consensus 253 G~~~~~~-~~-~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~-------------- 316 (412)
T cd04857 253 GEATHWP-NS-GRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMA-------------- 316 (412)
T ss_pred CcCCCCc-cc-hHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccc--------------
Confidence 9865322 11 22333343 3457999999999999832 222 2 2467899999853211000
Q ss_pred ecCCCCCCceeEEEEcchhhHHhhhhhcCcccccccccCCCCCCCCCcCCCcCceEEEEEecCCCchhHHHHHHHHhcCc
Q 041372 171 SLNPLETKTFYGLIAGSTAAAQLQQQMQGSVSGYSTLSGFCKNNTLDHHTLIKGKIVVCTIEASTDNRREKCIFVRESGG 250 (564)
Q Consensus 171 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gkIv~~~~~~~~~~~~~~~~~~~~~Ga 250 (564)
..| .. .
T Consensus 317 --------~~y-----------------------------------~~----~--------------------------- 322 (412)
T cd04857 317 --------AEY-----------------------------------SL----R--------------------------- 322 (412)
T ss_pred --------ccc-----------------------------------cc----c---------------------------
Confidence 000 00 0
Q ss_pred eEEEEEcCCCCCCCcceecceEEECHHhHHHHHHHHhcCCCcEEEEccCeeeecccCCCcccccccCCCCC---CCCcEE
Q 041372 251 VGMILIDPNAKDIGFQFVIPATLIGQEEAQELQAYMTAGKNPIARIYPPQTILKTKPAPEMAAFSSMGPNI---ITADII 327 (564)
Q Consensus 251 ~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~va~FSS~GP~~---~kPdI~ 327 (564)
.+..+.++.||||||+. +||||.
T Consensus 323 ------------------------------------------------------~~~~~~~~~fSSrGP~~dG~~~pdI~ 348 (412)
T cd04857 323 ------------------------------------------------------EKLPGNQYTWSSRGPTADGALGVSIS 348 (412)
T ss_pred ------------------------------------------------------cccCCccccccccCCcccCCcCceEE
Confidence 01123468999999974 899999
Q ss_pred cCCCccccccc-CCcceEEEeccccchhhHHHHHHHHH----hhCCCCCHHHHHHHHHhccccc
Q 041372 328 RSPVAIEATAE-QSVDYNIISGTSMSCPHVSAVAAIIK----SHHPSWSPAAIMSAIMTTATVL 386 (564)
Q Consensus 328 aPg~~i~s~~~-~~~~y~~~SGTSMAaP~VAG~aALl~----q~~P~~sp~~IksaL~~TA~~~ 386 (564)
|||..|.+.-. ....|..|+|||||||||||++|||+ |.+|+|+|.+||.+|++||+++
T Consensus 349 APG~~I~s~p~~~~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 349 APGGAIASVPNWTLQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred eCCCcEEEcccCCCCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 99999876421 23478999999999999999999996 4679999999999999999853
No 6
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=2.8e-38 Score=315.56 Aligned_cols=199 Identities=26% Similarity=0.354 Sum_probs=159.1
Q ss_pred CCCCCCCCChhhHHHhhcccccCCcccccccCcceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHHcCCcEEEEcc
Q 041372 17 RSARDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWFNL-CYDADILSALDDAINDVVDILSLSF 95 (564)
Q Consensus 17 ~sp~D~~GHGTHvAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ykv~~~~~-~~~~di~~Ai~~Ai~dgvdVIn~Sl 95 (564)
..+.|..||||||||||+|+.. .+.||||+|+|+.+|+|.+.+ +..++++++|++|+++++|||||||
T Consensus 39 ~~~~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~ 107 (255)
T cd07479 39 KTLDDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSI 107 (255)
T ss_pred CCCCCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeec
Confidence 3467889999999999999752 137999999999999997654 4567799999999999999999999
Q ss_pred CCCCCCCCCccchhhHHHHHHHhCCcEEEEccCCCCCC-CC--ccccCCceEEeeeeccCCceeeEEEecCCeEEeceec
Q 041372 96 GPSPPQPIYFEDSTSIGTFHAFQKGILVSASAGNSIFP-GT--ATNVAPGILTVAASSVDRKSYSNIYLGNSKILKGSSL 172 (564)
Q Consensus 96 G~~~~~~~~~~~~~~~~~~~a~~~Gv~vV~AAGN~g~~-~~--~~~~ap~vitVga~~~~~~~~~~~~lg~~~~~~g~~~ 172 (564)
|... +...++..++.++.++|++||+||||+|.. ++ .+...+++|+||+...
T Consensus 108 G~~~----~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~--------------------- 162 (255)
T cd07479 108 GGPD----FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDF--------------------- 162 (255)
T ss_pred cCCC----CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeecc---------------------
Confidence 9753 233455566778889999999999999831 22 3445566777776421
Q ss_pred CCCCCCceeEEEEcchhhHHhhhhhcCcccccccccCCCCCCCCCcCCCcCceEEEEEecCCCchhHHHHHHHHhcCceE
Q 041372 173 NPLETKTFYGLIAGSTAAAQLQQQMQGSVSGYSTLSGFCKNNTLDHHTLIKGKIVVCTIEASTDNRREKCIFVRESGGVG 252 (564)
Q Consensus 173 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gkIv~~~~~~~~~~~~~~~~~~~~~Ga~g 252 (564)
T Consensus 163 -------------------------------------------------------------------------------- 162 (255)
T cd07479 163 -------------------------------------------------------------------------------- 162 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEcCCCCCCCcceecceEEECHHhHHHHHHHHhcCCCcEEEEccCeeeecccCCCcccccccCCCC---------CCC
Q 041372 253 MILIDPNAKDIGFQFVIPATLIGQEEAQELQAYMTAGKNPIARIYPPQTILKTKPAPEMAAFSSMGPN---------IIT 323 (564)
Q Consensus 253 ~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~va~FSS~GP~---------~~k 323 (564)
.+.++.|||+|++ .+|
T Consensus 163 -------------------------------------------------------~~~~~~~S~~g~~~~~~p~~~g~~~ 187 (255)
T cd07479 163 -------------------------------------------------------DDNIARFSSRGMTTWELPGGYGRVK 187 (255)
T ss_pred -------------------------------------------------------CCccccccCCCCCcccccCCCCCcC
Confidence 1123566777643 269
Q ss_pred CcEEcCCCcccccccCCcceEEEeccccchhhHHHHHHHHHhhCC----CCCHHHHHHHHHhcccccc
Q 041372 324 ADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHP----SWSPAAIMSAIMTTATVLN 387 (564)
Q Consensus 324 PdI~aPg~~i~s~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P----~~sp~~IksaL~~TA~~~~ 387 (564)
|||.|||..++++... ..|..++|||||||||||++|||+|++| .++|++||.+|++||+++.
T Consensus 188 ~di~apG~~i~~~~~~-~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 188 PDIVTYGSGVYGSKLK-GGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred ccEEecCCCeeccccC-CCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 9999999999876654 4789999999999999999999999999 7899999999999998753
No 7
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.9e-38 Score=324.58 Aligned_cols=133 Identities=56% Similarity=0.792 Sum_probs=115.1
Q ss_pred CCCCCCCCCCChhhHHHhhcccccCCcccccccCcceeeecCCCeEEEEEEecC-CCCCHHHHHHHHHHHHHcCCcEEEE
Q 041372 15 SFRSARDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWF-NLCYDADILSALDDAINDVVDILSL 93 (564)
Q Consensus 15 ~~~sp~D~~GHGTHvAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ykv~~~-~~~~~~di~~Ai~~Ai~dgvdVIn~ 93 (564)
+..+|.|..||||||||||||+...+..+.|...+.+.||||+|+|+.+|+++. ..+..+++++||++|+++|++||||
T Consensus 100 ~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~~~~~~~~ai~~a~~~g~~Vin~ 179 (307)
T cd04852 100 EYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGSDILAAIDQAIADGVDVISY 179 (307)
T ss_pred CCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCccHHHHHHHHHHHHHcCCCEEEe
Confidence 356789999999999999999988776667777778899999999999999987 5678889999999999999999999
Q ss_pred ccCCCCCCCCCccchhhHHHHHHHhCCcEEEEccCCCC-CCCCccccCCceEEeeee
Q 041372 94 SFGPSPPQPIYFEDSTSIGTFHAFQKGILVSASAGNSI-FPGTATNVAPGILTVAAS 149 (564)
Q Consensus 94 SlG~~~~~~~~~~~~~~~~~~~a~~~Gv~vV~AAGN~g-~~~~~~~~ap~vitVga~ 149 (564)
|||.... ....+.+..+++++.++|++||+||||+| ...+.++.+||+++||+.
T Consensus 180 S~G~~~~--~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~ 234 (307)
T cd04852 180 SIGGGSP--DPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAS 234 (307)
T ss_pred CCCCCCC--CcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEec
Confidence 9998653 24567788888899999999999999998 445667788999999874
No 8
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.2e-37 Score=308.11 Aligned_cols=203 Identities=25% Similarity=0.281 Sum_probs=164.8
Q ss_pred CCCCCCCChhhHHHhhcccccCCcccccccCcceeeecCCCeEEEEEEecCC----CCCHHHHHHHHHHHHHcCCcEEEE
Q 041372 18 SARDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWFN----LCYDADILSALDDAINDVVDILSL 93 (564)
Q Consensus 18 sp~D~~GHGTHvAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ykv~~~~----~~~~~di~~Ai~~Ai~dgvdVIn~ 93 (564)
.+.|..+|||||||||+|..... .|+||+|+|+.+|++... .++..++++||+||++.|++||||
T Consensus 31 ~~~~~~~HGT~vAgiia~~~~~~-----------~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~ 99 (239)
T cd05561 31 GAPAPSAHGTAVASLLAGAGAQR-----------PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNI 99 (239)
T ss_pred CCCCCCCCHHHHHHHHhCCCCCC-----------cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEe
Confidence 46788999999999999986321 699999999999998754 256788999999999999999999
Q ss_pred ccCCCCCCCCCccchhhHHHHHHHhCCcEEEEccCCCCC--CCCccccCCceEEeeeeccCCceeeEEEecCCeEEecee
Q 041372 94 SFGPSPPQPIYFEDSTSIGTFHAFQKGILVSASAGNSIF--PGTATNVAPGILTVAASSVDRKSYSNIYLGNSKILKGSS 171 (564)
Q Consensus 94 SlG~~~~~~~~~~~~~~~~~~~a~~~Gv~vV~AAGN~g~--~~~~~~~ap~vitVga~~~~~~~~~~~~lg~~~~~~g~~ 171 (564)
|||... ...++.++.++.++|+++|+||||+|. +..++...|++|+|++.+.
T Consensus 100 S~g~~~------~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~-------------------- 153 (239)
T cd05561 100 SLAGPP------NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDA-------------------- 153 (239)
T ss_pred CCCCCC------CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecC--------------------
Confidence 999632 246677888999999999999999983 2334555666777765321
Q ss_pred cCCCCCCceeEEEEcchhhHHhhhhhcCcccccccccCCCCCCCCCcCCCcCceEEEEEecCCCchhHHHHHHHHhcCce
Q 041372 172 LNPLETKTFYGLIAGSTAAAQLQQQMQGSVSGYSTLSGFCKNNTLDHHTLIKGKIVVCTIEASTDNRREKCIFVRESGGV 251 (564)
Q Consensus 172 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gkIv~~~~~~~~~~~~~~~~~~~~~Ga~ 251 (564)
T Consensus 154 -------------------------------------------------------------------------------- 153 (239)
T cd05561 154 -------------------------------------------------------------------------------- 153 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEcCCCCCCCcceecceEEECHHhHHHHHHHHhcCCCcEEEEccCeeeecccCCCcccccccCCCCCCCCcEEcCCC
Q 041372 252 GMILIDPNAKDIGFQFVIPATLIGQEEAQELQAYMTAGKNPIARIYPPQTILKTKPAPEMAAFSSMGPNIITADIIRSPV 331 (564)
Q Consensus 252 g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~va~FSS~GP~~~kPdI~aPg~ 331 (564)
.+.++.||++|+.. ||.|||.
T Consensus 154 --------------------------------------------------------~~~~~~~s~~g~~~---di~ApG~ 174 (239)
T cd05561 154 --------------------------------------------------------RGRLYREANRGAHV---DFAAPGV 174 (239)
T ss_pred --------------------------------------------------------CCCccccCCCCCcc---eEEcccc
Confidence 11235688899864 9999999
Q ss_pred cccccccCCcceEEEeccccchhhHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCcccccCCCCCCCCCCCCCCCC
Q 041372 332 AIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPSWSPAAIMSAIMTTATVLNNNQQQIRRDPNGSQTTPFDNGSG 410 (564)
Q Consensus 332 ~i~s~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~IksaL~~TA~~~~~~~~~i~~~~~~~~~~~~~~GaG 410 (564)
.|+++... ..|..++|||||||||||++|||+|++| +++.|||++|++||.++... .....||+|
T Consensus 175 ~i~~~~~~-~~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~~------------~~d~~~G~G 239 (239)
T cd05561 175 DVWVAAPG-GGYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGPP------------GRDPVFGYG 239 (239)
T ss_pred ceecccCC-CCEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCCC------------CcCCCcCCC
Confidence 99886654 4899999999999999999999999999 99999999999999876532 234478887
No 9
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=2.4e-37 Score=323.28 Aligned_cols=255 Identities=25% Similarity=0.346 Sum_probs=180.4
Q ss_pred CCCCCCChhhHHHhhcccccCCcccccccCcceeeecCCCeEEEEEEecC---CCCCHHHHHHHHHHHHHcCCcEEEEcc
Q 041372 19 ARDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWF---NLCYDADILSALDDAINDVVDILSLSF 95 (564)
Q Consensus 19 p~D~~GHGTHvAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ykv~~~---~~~~~~di~~Ai~~Ai~dgvdVIn~Sl 95 (564)
..|..+|||||||||+|...+.. ....+.||||+|+|+.+|++.. ..+...++++|++++++.|++||||||
T Consensus 78 ~~~~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~ 152 (346)
T cd07475 78 EDDGSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSL 152 (346)
T ss_pred CCCCCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 45789999999999999875421 1224589999999999999963 346678899999999999999999999
Q ss_pred CCCCCCCCCccchhhHHHHHHHhCCcEEEEccCCCCCCCCccccCCceEEeeeeccCCceeeEEEecCCeEEeceecCCC
Q 041372 96 GPSPPQPIYFEDSTSIGTFHAFQKGILVSASAGNSIFPGTATNVAPGILTVAASSVDRKSYSNIYLGNSKILKGSSLNPL 175 (564)
Q Consensus 96 G~~~~~~~~~~~~~~~~~~~a~~~Gv~vV~AAGN~g~~~~~~~~ap~vitVga~~~~~~~~~~~~lg~~~~~~g~~~~~~ 175 (564)
|...... .....+..++.++.++|+++|+||||+|............. +
T Consensus 153 G~~~~~~-~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~----------~-------------------- 201 (346)
T cd07475 153 GSTAGFV-DLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATN----------N-------------------- 201 (346)
T ss_pred CcCCCCC-CCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCccccc----------C--------------------
Confidence 9875432 34556777888899999999999999983211000000000 0
Q ss_pred CCCceeEEEEcchhhHHhhhhhcCcccccccccCCCCCCCCCcCCCcCceEEEEEecCCCchhHHHHHHHHhcCceEEEE
Q 041372 176 ETKTFYGLIAGSTAAAQLQQQMQGSVSGYSTLSGFCKNNTLDHHTLIKGKIVVCTIEASTDNRREKCIFVRESGGVGMIL 255 (564)
Q Consensus 176 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gkIv~~~~~~~~~~~~~~~~~~~~~Ga~g~i~ 255 (564)
..+.. .+.+ ....+.|.+-...
T Consensus 202 ---~~~~~--------------------------~~~p------~~~~~~i~Vga~~----------------------- 223 (346)
T cd07475 202 ---PDTGT--------------------------VGSP------ATADDVLTVASAN----------------------- 223 (346)
T ss_pred ---CCcce--------------------------ecCC------ccCCCceEEeecc-----------------------
Confidence 00000 0000 0111111111000
Q ss_pred EcCCCCCCCcceecceEEECHHhHHHHHHHHhcCCCcEEEEccCeeeecccCCCcccccccCCCCC---CCCcEEcCCCc
Q 041372 256 IDPNAKDIGFQFVIPATLIGQEEAQELQAYMTAGKNPIARIYPPQTILKTKPAPEMAAFSSMGPNI---ITADIIRSPVA 332 (564)
Q Consensus 256 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~va~FSS~GP~~---~kPdI~aPg~~ 332 (564)
..........++.||+|||+. +||||++||.+
T Consensus 224 ---------------------------------------------~~~~~~~~~~~~~~S~~G~~~~~~~~pdi~apG~~ 258 (346)
T cd07475 224 ---------------------------------------------KKVPNPNGGQMSGFSSWGPTPDLDLKPDITAPGGN 258 (346)
T ss_pred ---------------------------------------------cccCCCCCCccCCCcCCCCCcccCcCCeEEeCCCC
Confidence 000012245678999999975 89999999999
Q ss_pred ccccccCCcceEEEeccccchhhHHHHHHHHHhh----CCCCCHHH----HHHHHHhccccccCCcccccCCCCCCCCCC
Q 041372 333 IEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSH----HPSWSPAA----IMSAIMTTATVLNNNQQQIRRDPNGSQTTP 404 (564)
Q Consensus 333 i~s~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~----~P~~sp~~----IksaL~~TA~~~~~~~~~i~~~~~~~~~~~ 404 (564)
+.++... ..|..++|||||||+|||++|||+|+ +|.|++.+ ||.+|++||.+.... ...+....+
T Consensus 259 i~s~~~~-~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~~------~~~~~~~~~ 331 (346)
T cd07475 259 IYSTVND-NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDS------EDTKTYYSP 331 (346)
T ss_pred eEEecCC-CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCccccc------CCCCccCCc
Confidence 9887665 48999999999999999999999997 79999877 788899999853221 123456778
Q ss_pred CCCCCCCccccccCC
Q 041372 405 FDNGSGHINQVAAMN 419 (564)
Q Consensus 405 ~~~GaG~Vn~~~A~~ 419 (564)
.++|+|+||+.+|++
T Consensus 332 ~~~G~G~vn~~~Av~ 346 (346)
T cd07475 332 RRQGAGLIDVAKAIA 346 (346)
T ss_pred cccCcchhcHHHhhC
Confidence 899999999999985
No 10
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=2.3e-37 Score=315.14 Aligned_cols=212 Identities=25% Similarity=0.253 Sum_probs=154.8
Q ss_pred CCCCCCCChhhHHHhhcccccCCcccccccCcceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHHHcCCcEEEEccCC
Q 041372 18 SARDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWFNLCYDADILSALDDAINDVVDILSLSFGP 97 (564)
Q Consensus 18 sp~D~~GHGTHvAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ykv~~~~~~~~~di~~Ai~~Ai~dgvdVIn~SlG~ 97 (564)
.|.|..||||||||||+|...++ .| +.||||+|+|+.+|++........++++||+||++.|++|||||||.
T Consensus 80 ~~~~~~gHGT~VAGiIaa~~~n~---~g-----~~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~IiN~S~G~ 151 (291)
T cd07483 80 GPISDADHGTHVAGIIAAVRDNG---IG-----IDGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKVINMSFGK 151 (291)
T ss_pred CCCCCCCcHHHHHHHHhCcCCCC---Cc-----eEEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcEEEeCCCC
Confidence 45578999999999999986543 22 38999999999999986555667889999999999999999999996
Q ss_pred CCCCCCCccchhhHHHHHHHhCCcEEEEccCCCCCCCCccccCCceEEeeeeccCCceeeEEEecCCeEEeceecCCCCC
Q 041372 98 SPPQPIYFEDSTSIGTFHAFQKGILVSASAGNSIFPGTATNVAPGILTVAASSVDRKSYSNIYLGNSKILKGSSLNPLET 177 (564)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~a~~~Gv~vV~AAGN~g~~~~~~~~ap~vitVga~~~~~~~~~~~~lg~~~~~~g~~~~~~~~ 177 (564)
... .....+..++.+|.++|+++|+||||+|.........|
T Consensus 152 ~~~---~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p------------------------------------ 192 (291)
T cd07483 152 SFS---PNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFP------------------------------------ 192 (291)
T ss_pred CCC---CccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCC------------------------------------
Confidence 532 12345677788899999999999999983211000000
Q ss_pred CceeEEEEcchhhHHhhhhhcCcccccccccCCCCCCCCCcCCCcCceEEEEEecCCCchhHHHHHHHHhcCceEEEEEc
Q 041372 178 KTFYGLIAGSTAAAQLQQQMQGSVSGYSTLSGFCKNNTLDHHTLIKGKIVVCTIEASTDNRREKCIFVRESGGVGMILID 257 (564)
Q Consensus 178 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gkIv~~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~ 257 (564)
..+ + ...+ ....+-|.+-...
T Consensus 193 -----~~~-------------------------~---~~~~-~~~~~vi~Vga~~------------------------- 213 (291)
T cd07483 193 -----NDY-------------------------D---KNGG-EPANNFITVGASS------------------------- 213 (291)
T ss_pred -----Ccc-------------------------c---ccCc-cccCCeeEEeecc-------------------------
Confidence 000 0 0000 0011111110000
Q ss_pred CCCCCCCcceecceEEECHHhHHHHHHHHhcCCCcEEEEccCeeeecccCCCcccccccCCCCCCCCcEEcCCCcccccc
Q 041372 258 PNAKDIGFQFVIPATLIGQEEAQELQAYMTAGKNPIARIYPPQTILKTKPAPEMAAFSSMGPNIITADIIRSPVAIEATA 337 (564)
Q Consensus 258 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~va~FSS~GP~~~kPdI~aPg~~i~s~~ 337 (564)
.......++.||++|+. ++||.|||..|.++.
T Consensus 214 ----------------------------------------------~~~~~~~~~~~Sn~G~~--~vdi~APG~~i~s~~ 245 (291)
T cd07483 214 ----------------------------------------------KKYENNLVANFSNYGKK--NVDVFAPGERIYSTT 245 (291)
T ss_pred ----------------------------------------------ccCCcccccccCCCCCC--ceEEEeCCCCeEecc
Confidence 00011246889999984 579999999999876
Q ss_pred cCCcceEEEeccccchhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 041372 338 EQSVDYNIISGTSMSCPHVSAVAAIIKSHHPSWSPAAIMSAIMTTAT 384 (564)
Q Consensus 338 ~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~IksaL~~TA~ 384 (564)
+. ..|..++|||||||||||++|||+|++|+|++.|||.+|++||+
T Consensus 246 ~~-~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 246 PD-NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred Cc-CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 65 48999999999999999999999999999999999999999984
No 11
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.1e-36 Score=311.17 Aligned_cols=229 Identities=37% Similarity=0.504 Sum_probs=178.7
Q ss_pred CCCCCCChhhHHHhhcccccCCcccccccCcceeeecCCCeEEEEEEecC-CCCCHHHHHHHHHHHHHcCCcEEEEccCC
Q 041372 19 ARDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWF-NLCYDADILSALDDAINDVVDILSLSFGP 97 (564)
Q Consensus 19 p~D~~GHGTHvAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ykv~~~-~~~~~~di~~Ai~~Ai~dgvdVIn~SlG~ 97 (564)
..|..||||||||+|+|...+. ..+.|+||+|+|+.+|++.. ..+...++++||+++++++++|||||||.
T Consensus 58 ~~~~~~HGT~vAgiiag~~~n~--------~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~ 129 (295)
T cd07474 58 AGDATGHGTHVAGIIAGNGVNV--------GTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGS 129 (295)
T ss_pred CCCCCCcHHHHHHHHhcCCCcc--------CceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 3458899999999999986542 23489999999999999873 34678889999999999999999999997
Q ss_pred CCCCCCCccchhhHHHHHHHhCCcEEEEccCCCCCCC---CccccCCceEEeeeeccCCceeeEEEecCCeEEeceecCC
Q 041372 98 SPPQPIYFEDSTSIGTFHAFQKGILVSASAGNSIFPG---TATNVAPGILTVAASSVDRKSYSNIYLGNSKILKGSSLNP 174 (564)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~a~~~Gv~vV~AAGN~g~~~---~~~~~ap~vitVga~~~~~~~~~~~~lg~~~~~~g~~~~~ 174 (564)
... ...+.+..+++++.++|+++|+||||+|... ..+...|++|+||+......
T Consensus 130 ~~~---~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~-------------------- 186 (295)
T cd07474 130 SVN---GPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV-------------------- 186 (295)
T ss_pred CCC---CCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc--------------------
Confidence 643 2356777888999999999999999998322 23556788999997540000
Q ss_pred CCCCceeEEEEcchhhHHhhhhhcCcccccccccCCCCCCCCCcCCCcCceEEEEEecCCCchhHHHHHHHHhcCceEEE
Q 041372 175 LETKTFYGLIAGSTAAAQLQQQMQGSVSGYSTLSGFCKNNTLDHHTLIKGKIVVCTIEASTDNRREKCIFVRESGGVGMI 254 (564)
Q Consensus 175 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gkIv~~~~~~~~~~~~~~~~~~~~~Ga~g~i 254 (564)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEcCCCCCCCcceecceEEECHHhHHHHHHHHhcCCCcEEEEccCeeeecccCCCccccccc-CCCC---CCCCcEEcCC
Q 041372 255 LIDPNAKDIGFQFVIPATLIGQEEAQELQAYMTAGKNPIARIYPPQTILKTKPAPEMAAFSS-MGPN---IITADIIRSP 330 (564)
Q Consensus 255 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~va~FSS-~GP~---~~kPdI~aPg 330 (564)
........|++ +|+. .+||||.+||
T Consensus 187 ---------------------------------------------------~~~~~~~~~~s~~~~~~~~~~kpdv~apG 215 (295)
T cd07474 187 ---------------------------------------------------AEADTVGPSSSRGPPTSDSAIKPDIVAPG 215 (295)
T ss_pred ---------------------------------------------------CCCCceeccCCCCCCCCCCCcCCCEECCc
Confidence 00011123344 4443 3899999999
Q ss_pred CcccccccC-CcceEEEeccccchhhHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCcccccCCCCCCCCCCCCCCC
Q 041372 331 VAIEATAEQ-SVDYNIISGTSMSCPHVSAVAAIIKSHHPSWSPAAIMSAIMTTATVLNNNQQQIRRDPNGSQTTPFDNGS 409 (564)
Q Consensus 331 ~~i~s~~~~-~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~IksaL~~TA~~~~~~~~~i~~~~~~~~~~~~~~Ga 409 (564)
.++.++... ...|..++|||||||+|||++|||+|++|+|++++||++|++||.+....+. ....+..+|+
T Consensus 216 ~~i~~~~~~~~~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~--------~~~~~~~~G~ 287 (295)
T cd07474 216 VDIMSTAPGSGTGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG--------VVYPVSRQGA 287 (295)
T ss_pred CceEeeccCCCCceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC--------CcCChhccCc
Confidence 999887664 3579999999999999999999999999999999999999999998764321 1124568999
Q ss_pred CCcccccc
Q 041372 410 GHINQVAA 417 (564)
Q Consensus 410 G~Vn~~~A 417 (564)
|+||+.+|
T Consensus 288 G~l~~~~A 295 (295)
T cd07474 288 GRVDALRA 295 (295)
T ss_pred ceeccccC
Confidence 99999887
No 12
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=9.3e-37 Score=306.21 Aligned_cols=204 Identities=24% Similarity=0.208 Sum_probs=167.8
Q ss_pred CCCCCCCCChhhHHHhhcccccCCcccccccCcceeeecCCCeEEEEEEecCC--CCCHHHHHHHHHHHHHcCCcEEEEc
Q 041372 17 RSARDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWFN--LCYDADILSALDDAINDVVDILSLS 94 (564)
Q Consensus 17 ~sp~D~~GHGTHvAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ykv~~~~--~~~~~di~~Ai~~Ai~dgvdVIn~S 94 (564)
....|..||||||||||+|+... .+.||||+|+|+.+|++... ++...++++||++|++.|+||||||
T Consensus 44 ~~~~~~~gHGT~VAgii~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S 113 (267)
T cd07476 44 CQDGGASAHGTHVASLIFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINIS 113 (267)
T ss_pred CCCCCCCCcHHHHHHHHhcCCCC----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEec
Confidence 35567899999999999987521 24799999999999998654 3446789999999999999999999
Q ss_pred cCCCCCCCCCccchhhHHHHHHHhCCcEEEEccCCCCC-CCCccccCCceEEeeeeccCCceeeEEEecCCeEEeceecC
Q 041372 95 FGPSPPQPIYFEDSTSIGTFHAFQKGILVSASAGNSIF-PGTATNVAPGILTVAASSVDRKSYSNIYLGNSKILKGSSLN 173 (564)
Q Consensus 95 lG~~~~~~~~~~~~~~~~~~~a~~~Gv~vV~AAGN~g~-~~~~~~~ap~vitVga~~~~~~~~~~~~lg~~~~~~g~~~~ 173 (564)
||..... ......+..++.+|.++|+++|+||||+|. ....+...|++|+||+...
T Consensus 114 ~G~~~~~-~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~---------------------- 170 (267)
T cd07476 114 GGRLTQT-GEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDD---------------------- 170 (267)
T ss_pred CCcCCCC-CCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecC----------------------
Confidence 9975421 134456778888999999999999999983 2344567788888886421
Q ss_pred CCCCCceeEEEEcchhhHHhhhhhcCcccccccccCCCCCCCCCcCCCcCceEEEEEecCCCchhHHHHHHHHhcCceEE
Q 041372 174 PLETKTFYGLIAGSTAAAQLQQQMQGSVSGYSTLSGFCKNNTLDHHTLIKGKIVVCTIEASTDNRREKCIFVRESGGVGM 253 (564)
Q Consensus 174 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gkIv~~~~~~~~~~~~~~~~~~~~~Ga~g~ 253 (564)
T Consensus 171 -------------------------------------------------------------------------------- 170 (267)
T cd07476 171 -------------------------------------------------------------------------------- 170 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEcCCCCCCCcceecceEEECHHhHHHHHHHHhcCCCcEEEEccCeeeecccCCCcccccccCCCCCCCCcEEcCCCcc
Q 041372 254 ILIDPNAKDIGFQFVIPATLIGQEEAQELQAYMTAGKNPIARIYPPQTILKTKPAPEMAAFSSMGPNIITADIIRSPVAI 333 (564)
Q Consensus 254 i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~va~FSS~GP~~~kPdI~aPg~~i 333 (564)
......||++|+...+|||.|||.++
T Consensus 171 ------------------------------------------------------~~~~~~~s~~g~~~~~~~l~ApG~~i 196 (267)
T cd07476 171 ------------------------------------------------------DGLPLKFSNWGADYRKKGILAPGENI 196 (267)
T ss_pred ------------------------------------------------------CCCeeeecCCCCCCCCceEEecCCCc
Confidence 01225688999988899999999999
Q ss_pred cccccCCcceEEEeccccchhhHHHHHHHHHhhCCC----CCHHHHHHHHHhccccccC
Q 041372 334 EATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPS----WSPAAIMSAIMTTATVLNN 388 (564)
Q Consensus 334 ~s~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~----~sp~~IksaL~~TA~~~~~ 388 (564)
+++.+. ..|..++|||||||||||++|||+|.+|. ++|++||.+|++||.++..
T Consensus 197 ~~~~~~-~~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~ 254 (267)
T cd07476 197 LGAALG-GEVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDP 254 (267)
T ss_pred eeecCC-CCeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCC
Confidence 987765 48999999999999999999999999887 9999999999999998763
No 13
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.1e-36 Score=313.59 Aligned_cols=228 Identities=27% Similarity=0.381 Sum_probs=180.9
Q ss_pred CCCCCCCCChhhHHHhhcccccCCcccccccCcceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHHcCCcEEEEcc
Q 041372 17 RSARDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWFNL-CYDADILSALDDAINDVVDILSLSF 95 (564)
Q Consensus 17 ~sp~D~~GHGTHvAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ykv~~~~~-~~~~di~~Ai~~Ai~dgvdVIn~Sl 95 (564)
.+|.|..||||||||||+|...+ .| +.||||+|+|+.||++...+ ...+.+++++++|+++|++|||+||
T Consensus 62 ~~~~d~~gHGT~vAgiia~~~~~----~~-----~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn~S~ 132 (312)
T cd07489 62 DDPMDCQGHGTHVAGIIAANPNA----YG-----FTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASL 132 (312)
T ss_pred CCCCCCCCcHHHHHHHHhcCCCC----Cc-----eEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeCC
Confidence 46778899999999999998743 23 38999999999999987544 4567789999999999999999999
Q ss_pred CCCCCCCCCccchhhHHHHHHHhCCcEEEEccCCCCCCC----CccccCCceEEeeeeccCCceeeEEEecCCeEEecee
Q 041372 96 GPSPPQPIYFEDSTSIGTFHAFQKGILVSASAGNSIFPG----TATNVAPGILTVAASSVDRKSYSNIYLGNSKILKGSS 171 (564)
Q Consensus 96 G~~~~~~~~~~~~~~~~~~~a~~~Gv~vV~AAGN~g~~~----~~~~~ap~vitVga~~~~~~~~~~~~lg~~~~~~g~~ 171 (564)
|.... +..+.+...+.++.++|+++|+||||+|... ..+...|++|+||+.+
T Consensus 133 g~~~~---~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~--------------------- 188 (312)
T cd07489 133 GGPSG---WSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD--------------------- 188 (312)
T ss_pred CcCCC---CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec---------------------
Confidence 98654 3446777788899999999999999998321 1223334444444321
Q ss_pred cCCCCCCceeEEEEcchhhHHhhhhhcCcccccccccCCCCCCCCCcCCCcCceEEEEEecCCCchhHHHHHHHHhcCce
Q 041372 172 LNPLETKTFYGLIAGSTAAAQLQQQMQGSVSGYSTLSGFCKNNTLDHHTLIKGKIVVCTIEASTDNRREKCIFVRESGGV 251 (564)
Q Consensus 172 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gkIv~~~~~~~~~~~~~~~~~~~~~Ga~ 251 (564)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEcCCCCCCCcceecceEEECHHhHHHHHHHHhcCCCcEEEEccCeeeecccCCCcccccccCCCCC---CCCcEEc
Q 041372 252 GMILIDPNAKDIGFQFVIPATLIGQEEAQELQAYMTAGKNPIARIYPPQTILKTKPAPEMAAFSSMGPNI---ITADIIR 328 (564)
Q Consensus 252 g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~va~FSS~GP~~---~kPdI~a 328 (564)
+.||+|||+. .||||++
T Consensus 189 ------------------------------------------------------------~~~s~~g~~~~~~~kpdv~A 208 (312)
T cd07489 189 ------------------------------------------------------------SYFSSWGPTNELYLKPDVAA 208 (312)
T ss_pred ------------------------------------------------------------CCccCCCCCCCCCcCccEEc
Confidence 4578888865 7999999
Q ss_pred CCCcccccccCC-cceEEEeccccchhhHHHHHHHHHhhC-CCCCHHHHHHHHHhccccccCCcccccCCCCCCCCCCCC
Q 041372 329 SPVAIEATAEQS-VDYNIISGTSMSCPHVSAVAAIIKSHH-PSWSPAAIMSAIMTTATVLNNNQQQIRRDPNGSQTTPFD 406 (564)
Q Consensus 329 Pg~~i~s~~~~~-~~y~~~SGTSMAaP~VAG~aALl~q~~-P~~sp~~IksaL~~TA~~~~~~~~~i~~~~~~~~~~~~~ 406 (564)
||..+.++.+.. ..|..++|||||||+|||++|||+|++ |.+++.+||++|++||.++...... .....+.....
T Consensus 209 pG~~i~~~~~~~~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~---~~~~~~~~~~~ 285 (312)
T cd07489 209 PGGNILSTYPLAGGGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGT---SALPDLAPVAQ 285 (312)
T ss_pred CCCCEEEeeeCCCCceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCC---ccccCCCCHhh
Confidence 999998876642 359999999999999999999999999 9999999999999999987643211 00111356679
Q ss_pred CCCCCccccccCCC
Q 041372 407 NGSGHINQVAAMNP 420 (564)
Q Consensus 407 ~GaG~Vn~~~A~~p 420 (564)
+|+|+||+.+|+..
T Consensus 286 ~G~G~vn~~~a~~~ 299 (312)
T cd07489 286 QGAGLVNAYKALYA 299 (312)
T ss_pred cCcceeeHHHHhcC
Confidence 99999999999985
No 14
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.6e-37 Score=311.80 Aligned_cols=216 Identities=22% Similarity=0.192 Sum_probs=158.4
Q ss_pred CCCCCCChhhHHHhhcccccCCcccccccCcceeeecCCCeEEEEEEecCCC-----CCHHHHHHHHHHHHHcC---CcE
Q 041372 19 ARDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWFNL-----CYDADILSALDDAINDV---VDI 90 (564)
Q Consensus 19 p~D~~GHGTHvAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ykv~~~~~-----~~~~di~~Ai~~Ai~dg---vdV 90 (564)
+.|..||||||||||++....+ ....|+||+|+|+.+|++...+ ....++++||++|++.+ ++|
T Consensus 34 ~~d~~gHGT~vAgiia~~~~~~--------~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~V 105 (291)
T cd04847 34 TADDLGHGTAVAGLALYGDLTL--------PGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRV 105 (291)
T ss_pred cCCCCCChHHHHHHHHcCcccC--------CCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeE
Confidence 6799999999999999764321 1237999999999999998753 44678999999999853 499
Q ss_pred EEEccCCCCCCCCCccchhhHHHHH-HHhCCcEEEEccCCCCCCCC-------------ccccCCceEEeeeeccCCcee
Q 041372 91 LSLSFGPSPPQPIYFEDSTSIGTFH-AFQKGILVSASAGNSIFPGT-------------ATNVAPGILTVAASSVDRKSY 156 (564)
Q Consensus 91 In~SlG~~~~~~~~~~~~~~~~~~~-a~~~Gv~vV~AAGN~g~~~~-------------~~~~ap~vitVga~~~~~~~~ 156 (564)
||||||............+..++.+ +.++|++||+||||++.... .+..+|++|+|||.+.+....
T Consensus 106 iN~SlG~~~~~~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~ 185 (291)
T cd04847 106 FNLSLGSPLPIDDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDIT 185 (291)
T ss_pred EEEecCCCCCccCCCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCC
Confidence 9999998653211111244445543 56899999999999983221 245678899999865432210
Q ss_pred eEEEecCCeEEeceecCCCCCCceeEEEEcchhhHHhhhhhcCcccccccccCCCCCCCCCcCCCcCceEEEEEecCCCc
Q 041372 157 SNIYLGNSKILKGSSLNPLETKTFYGLIAGSTAAAQLQQQMQGSVSGYSTLSGFCKNNTLDHHTLIKGKIVVCTIEASTD 236 (564)
Q Consensus 157 ~~~~lg~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gkIv~~~~~~~~~ 236 (564)
.. .. .+
T Consensus 186 ~~----------------------------------------------------------s~----~~------------ 191 (291)
T cd04847 186 DR----------------------------------------------------------AR----YS------------ 191 (291)
T ss_pred Cc----------------------------------------------------------cc----cc------------
Confidence 00 00 00
Q ss_pred hhHHHHHHHHhcCceEEEEEcCCCCCCCcceecceEEECHHhHHHHHHHHhcCCCcEEEEccCeeeecccCCCccccccc
Q 041372 237 NRREKCIFVRESGGVGMILIDPNAKDIGFQFVIPATLIGQEEAQELQAYMTAGKNPIARIYPPQTILKTKPAPEMAAFSS 316 (564)
Q Consensus 237 ~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~va~FSS 316 (564)
.........|||
T Consensus 192 --------------------------------------------------------------------~~~~~~~~~fs~ 203 (291)
T cd04847 192 --------------------------------------------------------------------AVGPAPAGATTS 203 (291)
T ss_pred --------------------------------------------------------------------ccccccCCCccc
Confidence 000001133999
Q ss_pred CCCCC---CCCcEEcCCCcccccc-----------------cCCcceEEEeccccchhhHHHHHHHHHhhCCCCCHHHHH
Q 041372 317 MGPNI---ITADIIRSPVAIEATA-----------------EQSVDYNIISGTSMSCPHVSAVAAIIKSHHPSWSPAAIM 376 (564)
Q Consensus 317 ~GP~~---~kPdI~aPg~~i~s~~-----------------~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Ik 376 (564)
|||.. +||||+|||+++.+.. .....|..++|||||||||||++|||+|++|+++|.+||
T Consensus 204 ~Gp~~~~~~KPDl~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ik 283 (291)
T cd04847 204 SGPGSPGPIKPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIR 283 (291)
T ss_pred cCCCCCCCcCCcEEeeCCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 99964 8999999999987532 124589999999999999999999999999999999999
Q ss_pred HHHHhccc
Q 041372 377 SAIMTTAT 384 (564)
Q Consensus 377 saL~~TA~ 384 (564)
.+|+.||+
T Consensus 284 alL~~sA~ 291 (291)
T cd04847 284 ALLIHSAE 291 (291)
T ss_pred HHHHhhcC
Confidence 99999984
No 15
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.1e-36 Score=301.62 Aligned_cols=198 Identities=29% Similarity=0.334 Sum_probs=157.8
Q ss_pred CCCCCChhhHHHhhcccccCCcccccccCcceeeecCCCeEEEEEEecCCC---CCHHHHHHHHHHHHHcCCcEEEEccC
Q 041372 20 RDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWFNL---CYDADILSALDDAINDVVDILSLSFG 96 (564)
Q Consensus 20 ~D~~GHGTHvAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ykv~~~~~---~~~~di~~Ai~~Ai~dgvdVIn~SlG 96 (564)
.|..||||||||||+|+.. +.+.||||+|+|+.+|++.... ....++++|+++|.+.|++|||||||
T Consensus 44 ~~~~~HGT~vagiia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G 113 (261)
T cd07493 44 YTDDDHGTAVLSTMAGYTP----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLG 113 (261)
T ss_pred CCCCCchhhhheeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 6788999999999999752 2358999999999999865432 23557899999999999999999999
Q ss_pred CCCCCCC----------CccchhhHHHHHHHhCCcEEEEccCCCCCC----CCccccCCceEEeeeeccCCceeeEEEec
Q 041372 97 PSPPQPI----------YFEDSTSIGTFHAFQKGILVSASAGNSIFP----GTATNVAPGILTVAASSVDRKSYSNIYLG 162 (564)
Q Consensus 97 ~~~~~~~----------~~~~~~~~~~~~a~~~Gv~vV~AAGN~g~~----~~~~~~ap~vitVga~~~~~~~~~~~~lg 162 (564)
....... .....+..+++.+.++|+++|+||||+|.. ...+...|++|+||+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~----------- 182 (261)
T cd07493 114 YTTFDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDA----------- 182 (261)
T ss_pred cCCCCCcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEecc-----------
Confidence 7543211 011346677888999999999999999843 234556677777776321
Q ss_pred CCeEEeceecCCCCCCceeEEEEcchhhHHhhhhhcCcccccccccCCCCCCCCCcCCCcCceEEEEEecCCCchhHHHH
Q 041372 163 NSKILKGSSLNPLETKTFYGLIAGSTAAAQLQQQMQGSVSGYSTLSGFCKNNTLDHHTLIKGKIVVCTIEASTDNRREKC 242 (564)
Q Consensus 163 ~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gkIv~~~~~~~~~~~~~~~ 242 (564)
T Consensus 183 -------------------------------------------------------------------------------- 182 (261)
T cd07493 183 -------------------------------------------------------------------------------- 182 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCceEEEEEcCCCCCCCcceecceEEECHHhHHHHHHHHhcCCCcEEEEccCeeeecccCCCcccccccCCCCC-
Q 041372 243 IFVRESGGVGMILIDPNAKDIGFQFVIPATLIGQEEAQELQAYMTAGKNPIARIYPPQTILKTKPAPEMAAFSSMGPNI- 321 (564)
Q Consensus 243 ~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~va~FSS~GP~~- 321 (564)
...++.||++||+.
T Consensus 183 -----------------------------------------------------------------~~~~~~~S~~G~~~~ 197 (261)
T cd07493 183 -----------------------------------------------------------------NGNKASFSSIGPTAD 197 (261)
T ss_pred -----------------------------------------------------------------CCCCCccCCcCCCCC
Confidence 11246789999864
Q ss_pred --CCCcEEcCCCcccccccCCcceEEEeccccchhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 041372 322 --ITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPSWSPAAIMSAIMTTAT 384 (564)
Q Consensus 322 --~kPdI~aPg~~i~s~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~IksaL~~TA~ 384 (564)
+||||.+||..+...... ..|..++|||||||||||++|||+|++|+|++.|||++|++||+
T Consensus 198 ~~~~pdi~a~G~~~~~~~~~-~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 198 GRLKPDVMALGTGIYVINGD-GNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred CCcCCceEecCCCeEEEcCC-CcEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 899999999998874443 47999999999999999999999999999999999999999984
No 16
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=9.8e-36 Score=299.36 Aligned_cols=198 Identities=30% Similarity=0.308 Sum_probs=162.8
Q ss_pred CCCCCCCCChhhHHHhhcccccCCcccccccCcceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHHH-----------
Q 041372 17 RSARDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWFNLCYDADILSALDDAIN----------- 85 (564)
Q Consensus 17 ~sp~D~~GHGTHvAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ykv~~~~~~~~~di~~Ai~~Ai~----------- 85 (564)
..|.|..||||||||||+|....+ ...||||+|+|+.+|++....+...+++++++++++
T Consensus 46 ~~~~d~~~HGT~vagii~g~~~~~---------~~~GvAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 116 (264)
T cd07481 46 PLPYDDNGHGTHTMGTMVGNDGDG---------QQIGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADP 116 (264)
T ss_pred CCCCCCCCchhhhhhheeecCCCC---------CceEECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhccccccccccc
Confidence 457788999999999999875321 227999999999999998777888899999999975
Q ss_pred -cCCcEEEEccCCCCCCCCCccchhhHHHHHHHhCCcEEEEccCCCCCCC----CccccCCceEEeeeeccCCceeeEEE
Q 041372 86 -DVVDILSLSFGPSPPQPIYFEDSTSIGTFHAFQKGILVSASAGNSIFPG----TATNVAPGILTVAASSVDRKSYSNIY 160 (564)
Q Consensus 86 -dgvdVIn~SlG~~~~~~~~~~~~~~~~~~~a~~~Gv~vV~AAGN~g~~~----~~~~~ap~vitVga~~~~~~~~~~~~ 160 (564)
.|+||||||||.... ....+..++..+.++|++||+||||++... ..+...|++|+||+.+.
T Consensus 117 ~~~~~Iin~S~G~~~~----~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~--------- 183 (264)
T cd07481 117 DLAPDVINNSWGGPSG----DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDR--------- 183 (264)
T ss_pred ccCCeEEEeCCCcCCC----CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCC---------
Confidence 789999999997642 234555667788889999999999998321 23455666676665321
Q ss_pred ecCCeEEeceecCCCCCCceeEEEEcchhhHHhhhhhcCcccccccccCCCCCCCCCcCCCcCceEEEEEecCCCchhHH
Q 041372 161 LGNSKILKGSSLNPLETKTFYGLIAGSTAAAQLQQQMQGSVSGYSTLSGFCKNNTLDHHTLIKGKIVVCTIEASTDNRRE 240 (564)
Q Consensus 161 lg~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gkIv~~~~~~~~~~~~~ 240 (564)
T Consensus 184 -------------------------------------------------------------------------------- 183 (264)
T cd07481 184 -------------------------------------------------------------------------------- 183 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCceEEEEEcCCCCCCCcceecceEEECHHhHHHHHHHHhcCCCcEEEEccCeeeecccCCCcccccccCCCC
Q 041372 241 KCIFVRESGGVGMILIDPNAKDIGFQFVIPATLIGQEEAQELQAYMTAGKNPIARIYPPQTILKTKPAPEMAAFSSMGPN 320 (564)
Q Consensus 241 ~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~va~FSS~GP~ 320 (564)
...++.||++||.
T Consensus 184 -------------------------------------------------------------------~~~~~~~S~~g~~ 196 (264)
T cd07481 184 -------------------------------------------------------------------NDVLADFSSRGPS 196 (264)
T ss_pred -------------------------------------------------------------------CCCCccccCCCCC
Confidence 1234679999997
Q ss_pred C---CCCcEEcCCCcccccccCCcceEEEeccccchhhHHHHHHHHHhhCCC--CCHHHHHHHHHhccc
Q 041372 321 I---ITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPS--WSPAAIMSAIMTTAT 384 (564)
Q Consensus 321 ~---~kPdI~aPg~~i~s~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~--~sp~~IksaL~~TA~ 384 (564)
. +||||+|||.++.++.+. ..|..++|||||||+|||++|||+|++|+ +++.|||++|++||+
T Consensus 197 ~~~~~~~dv~ApG~~i~s~~~~-~~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 197 TYGRIKPDISAPGVNIRSAVPG-GGYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred CCCCcCceEEECCCCeEEecCC-CceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 5 899999999999987775 58999999999999999999999999999 999999999999985
No 17
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.1e-35 Score=292.14 Aligned_cols=208 Identities=31% Similarity=0.417 Sum_probs=169.0
Q ss_pred CCCCCCCCChhhHHHhhcccccCCcccccccCcceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHHc----CCcEE
Q 041372 17 RSARDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWFNL-CYDADILSALDDAIND----VVDIL 91 (564)
Q Consensus 17 ~sp~D~~GHGTHvAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ykv~~~~~-~~~~di~~Ai~~Ai~d----gvdVI 91 (564)
..+.|..||||||||+|+|..... .+.+.|+||+|+|+.+|++...+ ....++++|++++++. +++||
T Consensus 38 ~~~~d~~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Ii 110 (264)
T cd07487 38 TTPYDDNGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVV 110 (264)
T ss_pred CCCCCCCCchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEE
Confidence 456788899999999999986432 22358999999999999987654 4578899999999998 99999
Q ss_pred EEccCCCCCCCCCccchhhHHHHHHHhCCcEEEEccCCCCCCC---CccccCCceEEeeeeccCCceeeEEEecCCeEEe
Q 041372 92 SLSFGPSPPQPIYFEDSTSIGTFHAFQKGILVSASAGNSIFPG---TATNVAPGILTVAASSVDRKSYSNIYLGNSKILK 168 (564)
Q Consensus 92 n~SlG~~~~~~~~~~~~~~~~~~~a~~~Gv~vV~AAGN~g~~~---~~~~~ap~vitVga~~~~~~~~~~~~lg~~~~~~ 168 (564)
|||||..... ....+.+..++.++.++|+++|+||||++... ..+...|.+|+||+...+..
T Consensus 111 n~S~g~~~~~-~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~-------------- 175 (264)
T cd07487 111 NLSLGAPPDP-SYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP-------------- 175 (264)
T ss_pred EeccCCCCCC-CCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC--------------
Confidence 9999986532 24567788889999999999999999998332 44566778888887532110
Q ss_pred ceecCCCCCCceeEEEEcchhhHHhhhhhcCcccccccccCCCCCCCCCcCCCcCceEEEEEecCCCchhHHHHHHHHhc
Q 041372 169 GSSLNPLETKTFYGLIAGSTAAAQLQQQMQGSVSGYSTLSGFCKNNTLDHHTLIKGKIVVCTIEASTDNRREKCIFVRES 248 (564)
Q Consensus 169 g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gkIv~~~~~~~~~~~~~~~~~~~~~ 248 (564)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEEcCCCCCCCcceecceEEECHHhHHHHHHHHhcCCCcEEEEccCeeeecccCCCcccccccCCCCC---CCCc
Q 041372 249 GGVGMILIDPNAKDIGFQFVIPATLIGQEEAQELQAYMTAGKNPIARIYPPQTILKTKPAPEMAAFSSMGPNI---ITAD 325 (564)
Q Consensus 249 Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~va~FSS~GP~~---~kPd 325 (564)
....++.||++||+. +|||
T Consensus 176 ----------------------------------------------------------~~~~~~~~s~~G~~~~~~~~~d 197 (264)
T cd07487 176 ----------------------------------------------------------HDDGISYFSSRGPTGDGRIKPD 197 (264)
T ss_pred ----------------------------------------------------------CCccccccccCCCCCCCCcCCC
Confidence 001247799999964 8999
Q ss_pred EEcCCCccccc--------ccCCcceEEEeccccchhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 041372 326 IIRSPVAIEAT--------AEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPSWSPAAIMSAIMTTAT 384 (564)
Q Consensus 326 I~aPg~~i~s~--------~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~IksaL~~TA~ 384 (564)
|++||..+.+. ......|..++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 198 i~apG~~i~~~~~~~~~~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 198 VVAPGENIVSCRSPGGNPGAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred EEccccceEeccccccccCCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 99999999875 233568899999999999999999999999999999999999999984
No 18
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.4e-34 Score=287.63 Aligned_cols=213 Identities=28% Similarity=0.310 Sum_probs=159.3
Q ss_pred CCCCCCCCChhhHHHhhcccccCCcccccccCcceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHHHcCCcEEEEccC
Q 041372 17 RSARDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWFNLCYDADILSALDDAINDVVDILSLSFG 96 (564)
Q Consensus 17 ~sp~D~~GHGTHvAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ykv~~~~~~~~~di~~Ai~~Ai~dgvdVIn~SlG 96 (564)
..+.|..||||||||||+|+.. .+.+.||||+|+|+.+|++...++..+++++||+++++.++||||||||
T Consensus 37 ~~~~d~~~HGT~vAgiia~~~~---------~~~~~GvAp~a~i~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g 107 (254)
T cd07490 37 TEVFDAGGHGTHVSGTIGGGGA---------KGVYIGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLG 107 (254)
T ss_pred CCCCCCCCcHHHHHHHHhcCCC---------CCCEEEECCCCEEEEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCC
Confidence 3456788999999999999864 2234799999999999999876677889999999999999999999999
Q ss_pred CCCCCCCCccchhhHHHHHHHh-CCcEEEEccCCCCC-CCCccccCCceEEeeeeccCCceeeEEEecCCeEEeceecCC
Q 041372 97 PSPPQPIYFEDSTSIGTFHAFQ-KGILVSASAGNSIF-PGTATNVAPGILTVAASSVDRKSYSNIYLGNSKILKGSSLNP 174 (564)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~a~~-~Gv~vV~AAGN~g~-~~~~~~~ap~vitVga~~~~~~~~~~~~lg~~~~~~g~~~~~ 174 (564)
..... .+.+..+++.+.+ +|++||+||||++. ....+...|++|+||+.+.+.........+.
T Consensus 108 ~~~~~----~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~~g~----------- 172 (254)
T cd07490 108 GTYYS----EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSSFGS----------- 172 (254)
T ss_pred cCCCC----CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccCCcc-----------
Confidence 76531 4555555555554 69999999999983 3455667899999998754322100000000
Q ss_pred CCCCceeEEEEcchhhHHhhhhhcCcccccccccCCCCCCCCCcCCCcCceEEEEEecCCCchhHHHHHHHHhcCceEEE
Q 041372 175 LETKTFYGLIAGSTAAAQLQQQMQGSVSGYSTLSGFCKNNTLDHHTLIKGKIVVCTIEASTDNRREKCIFVRESGGVGMI 254 (564)
Q Consensus 175 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gkIv~~~~~~~~~~~~~~~~~~~~~Ga~g~i 254 (564)
++. +
T Consensus 173 --------------------------------------------------~~~-~------------------------- 176 (254)
T cd07490 173 --------------------------------------------------SGA-S------------------------- 176 (254)
T ss_pred --------------------------------------------------ccc-c-------------------------
Confidence 000 0
Q ss_pred EEcCCCCCCCcceecceEEECHHhHHHHHHHHhcCCCcEEEEccCeeeecccCCCcccccccCCCCCCCCcEEcCCCccc
Q 041372 255 LIDPNAKDIGFQFVIPATLIGQEEAQELQAYMTAGKNPIARIYPPQTILKTKPAPEMAAFSSMGPNIITADIIRSPVAIE 334 (564)
Q Consensus 255 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~va~FSS~GP~~~kPdI~aPg~~i~ 334 (564)
.....+.+.....||||.+||..+.
T Consensus 177 -------------------------------------------------------~~~~~~~~~~~~~~~d~~apG~~i~ 201 (254)
T cd07490 177 -------------------------------------------------------LVSAPDSPPDEYTKPDVAAPGVDVY 201 (254)
T ss_pred -------------------------------------------------------cccCCCCCccCCcCceEEeccCCeE
Confidence 0000112222347999999999998
Q ss_pred ccc---cCCcceEEEeccccchhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 041372 335 ATA---EQSVDYNIISGTSMSCPHVSAVAAIIKSHHPSWSPAAIMSAIMTTAT 384 (564)
Q Consensus 335 s~~---~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~IksaL~~TA~ 384 (564)
++. .....|..++|||||||+|||++|||+|++|+|++.+||.+|++||+
T Consensus 202 ~~~~~~~~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 202 SARQGANGDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred ccccCCCCCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 732 23458999999999999999999999999999999999999999984
No 19
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.1e-34 Score=292.96 Aligned_cols=193 Identities=28% Similarity=0.367 Sum_probs=156.7
Q ss_pred CCCCCCChhhHHHhhcccccCCcccccccCcceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHH----------HcCC
Q 041372 19 ARDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWFNLCYDADILSALDDAI----------NDVV 88 (564)
Q Consensus 19 p~D~~GHGTHvAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ykv~~~~~~~~~di~~Ai~~Ai----------~dgv 88 (564)
++|..||||||||||+|...++ .| +.||||+|+|+.+|++...+....++++|++||+ ++++
T Consensus 67 ~~~~~~HGT~vAgiiaa~~~~~---~~-----~~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~~ 138 (285)
T cd07496 67 VSPSSWHGTHVAGTIAAVTNNG---VG-----VAGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNPA 138 (285)
T ss_pred CCCCCCCHHHHHHHHhCcCCCC---CC-----ceeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCCCC
Confidence 4567889999999999987532 22 3799999999999999877678889999999998 4678
Q ss_pred cEEEEccCCCCCCCCCccchhhHHHHHHHhCCcEEEEccCCCCCC--CCccccCCceEEeeeeccCCceeeEEEecCCeE
Q 041372 89 DILSLSFGPSPPQPIYFEDSTSIGTFHAFQKGILVSASAGNSIFP--GTATNVAPGILTVAASSVDRKSYSNIYLGNSKI 166 (564)
Q Consensus 89 dVIn~SlG~~~~~~~~~~~~~~~~~~~a~~~Gv~vV~AAGN~g~~--~~~~~~ap~vitVga~~~~~~~~~~~~lg~~~~ 166 (564)
+|||||||.... ....+..++..+.++|++||+||||++.. ...+..+|++|+||+.+.
T Consensus 139 ~Iin~S~G~~~~----~~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~--------------- 199 (285)
T cd07496 139 KVINLSLGGDGA----CSATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDL--------------- 199 (285)
T ss_pred eEEEeCCCCCCC----CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCC---------------
Confidence 999999998642 14567778889999999999999999843 334556677777776421
Q ss_pred EeceecCCCCCCceeEEEEcchhhHHhhhhhcCcccccccccCCCCCCCCCcCCCcCceEEEEEecCCCchhHHHHHHHH
Q 041372 167 LKGSSLNPLETKTFYGLIAGSTAAAQLQQQMQGSVSGYSTLSGFCKNNTLDHHTLIKGKIVVCTIEASTDNRREKCIFVR 246 (564)
Q Consensus 167 ~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gkIv~~~~~~~~~~~~~~~~~~~ 246 (564)
T Consensus 200 -------------------------------------------------------------------------------- 199 (285)
T cd07496 200 -------------------------------------------------------------------------------- 199 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCceEEEEEcCCCCCCCcceecceEEECHHhHHHHHHHHhcCCCcEEEEccCeeeecccCCCcccccccCCCCCCCCcE
Q 041372 247 ESGGVGMILIDPNAKDIGFQFVIPATLIGQEEAQELQAYMTAGKNPIARIYPPQTILKTKPAPEMAAFSSMGPNIITADI 326 (564)
Q Consensus 247 ~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~va~FSS~GP~~~kPdI 326 (564)
...++.||++||.. ||
T Consensus 200 -------------------------------------------------------------~~~~~~~S~~g~~v---di 215 (285)
T cd07496 200 -------------------------------------------------------------RGQRASYSNYGPAV---DV 215 (285)
T ss_pred -------------------------------------------------------------CCCcccccCCCCCC---CE
Confidence 11236789999865 99
Q ss_pred EcCCCcccccccC--------------CcceEEEeccccchhhHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 041372 327 IRSPVAIEATAEQ--------------SVDYNIISGTSMSCPHVSAVAAIIKSHHPSWSPAAIMSAIMTT 382 (564)
Q Consensus 327 ~aPg~~i~s~~~~--------------~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~IksaL~~T 382 (564)
.+||..+.+.... ...|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 216 ~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 216 SAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred EeCCCCccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 9999988765432 2468999999999999999999999999999999999999976
No 20
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.7e-34 Score=284.18 Aligned_cols=197 Identities=28% Similarity=0.345 Sum_probs=159.8
Q ss_pred CCCCCCCChhhHHHhhcccccCCcccccccCcceeeecCCCeEEEEEEecCC-CCCHHHHHHHHHHHHHcCCcEEEEccC
Q 041372 18 SARDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWFN-LCYDADILSALDDAINDVVDILSLSFG 96 (564)
Q Consensus 18 sp~D~~GHGTHvAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ykv~~~~-~~~~~di~~Ai~~Ai~dgvdVIn~SlG 96 (564)
.+.|..||||||||||+|+..+. ..+.|+||+|+|+.+|++... .+...++.+++++|++.+++|||||||
T Consensus 35 ~~~~~~~HGT~vAgiiag~~~~~--------~~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g 106 (242)
T cd07498 35 PTSDIDGHGTACAGVAAAVGNNG--------LGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWG 106 (242)
T ss_pred CCCCCCCCHHHHHHHHHhccCCC--------ceeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccC
Confidence 35788999999999999986432 124799999999999998755 356788999999999999999999999
Q ss_pred CCCCCCCCccchhhHHHHHHHh-CCcEEEEccCCCCCC-CCccccCCceEEeeeeccCCceeeEEEecCCeEEeceecCC
Q 041372 97 PSPPQPIYFEDSTSIGTFHAFQ-KGILVSASAGNSIFP-GTATNVAPGILTVAASSVDRKSYSNIYLGNSKILKGSSLNP 174 (564)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~a~~-~Gv~vV~AAGN~g~~-~~~~~~ap~vitVga~~~~~~~~~~~~lg~~~~~~g~~~~~ 174 (564)
...... .....+..++.++.+ +|+++|+||||+|.. ...+...|++|+||+.+..
T Consensus 107 ~~~~~~-~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~---------------------- 163 (242)
T cd07498 107 GSDSTE-SISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN---------------------- 163 (242)
T ss_pred CCCCCc-hHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC----------------------
Confidence 765322 345667777888888 999999999999843 2356678889999875310
Q ss_pred CCCCceeEEEEcchhhHHhhhhhcCcccccccccCCCCCCCCCcCCCcCceEEEEEecCCCchhHHHHHHHHhcCceEEE
Q 041372 175 LETKTFYGLIAGSTAAAQLQQQMQGSVSGYSTLSGFCKNNTLDHHTLIKGKIVVCTIEASTDNRREKCIFVRESGGVGMI 254 (564)
Q Consensus 175 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gkIv~~~~~~~~~~~~~~~~~~~~~Ga~g~i 254 (564)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEcCCCCCCCcceecceEEECHHhHHHHHHHHhcCCCcEEEEccCeeeecccCCCcccccccCCCCCCCCcEEcCCCccc
Q 041372 255 LIDPNAKDIGFQFVIPATLIGQEEAQELQAYMTAGKNPIARIYPPQTILKTKPAPEMAAFSSMGPNIITADIIRSPVAIE 334 (564)
Q Consensus 255 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~va~FSS~GP~~~kPdI~aPg~~i~ 334 (564)
+..+.||+|||.. |+.+||..+.
T Consensus 164 ------------------------------------------------------~~~~~~s~~g~~~---~~~apG~~~~ 186 (242)
T cd07498 164 ------------------------------------------------------DARASYSNYGNYV---DLVAPGVGIW 186 (242)
T ss_pred ------------------------------------------------------CCccCcCCCCCCe---EEEeCcCCcc
Confidence 1136788899865 9999999887
Q ss_pred ccc--------cCCcceEEEeccccchhhHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 041372 335 ATA--------EQSVDYNIISGTSMSCPHVSAVAAIIKSHHPSWSPAAIMSAIMTT 382 (564)
Q Consensus 335 s~~--------~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~IksaL~~T 382 (564)
... .....|..++|||||||+|||++|||+|++|+|++.|||.+|+.|
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 187 TTGTGRGSAGDYPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred cCCccccccccCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 652 124578999999999999999999999999999999999999976
No 21
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.8e-34 Score=292.67 Aligned_cols=113 Identities=27% Similarity=0.259 Sum_probs=91.5
Q ss_pred CCCCCCCCChhhHHHhhcccccCCcccccccCcceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHHHcCCcEEEEccC
Q 041372 17 RSARDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWFNLCYDADILSALDDAINDVVDILSLSFG 96 (564)
Q Consensus 17 ~sp~D~~GHGTHvAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ykv~~~~~~~~~di~~Ai~~Ai~dgvdVIn~SlG 96 (564)
+.+.|+.|||||||+++ .||||+|+|+.+|++.. ..+++++||+||+++|+||||||||
T Consensus 55 ~~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~---~~~~~~~ai~~a~~~g~dVIn~SlG 113 (298)
T cd07494 55 DPACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP---DLVNSVGAFKKAISLSPDIISNSWG 113 (298)
T ss_pred CCCCCCCCcchheeece------------------eEeCCCCeEEEEEccCC---CcHHHHHHHHHHHhcCCCEEEeecc
Confidence 45678999999998764 48999999999999753 4667999999999999999999999
Q ss_pred CCCCCCC--------CccchhhHHHHHHHhCCcEEEEccCCCCCCCCccccCCceEEeeeeccC
Q 041372 97 PSPPQPI--------YFEDSTSIGTFHAFQKGILVSASAGNSIFPGTATNVAPGILTVAASSVD 152 (564)
Q Consensus 97 ~~~~~~~--------~~~~~~~~~~~~a~~~Gv~vV~AAGN~g~~~~~~~~ap~vitVga~~~~ 152 (564)
.....+. .....+..++.+|.++|++||+||||++. .++...|++|+||+++.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~--~~Pa~~p~viaVga~~~~ 175 (298)
T cd07494 114 YDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW--SFPAQHPEVIAAGGVFVD 175 (298)
T ss_pred cCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC--CcCCCCCCEEEEEeEecc
Confidence 7532211 11235777888899999999999999983 457889999999997543
No 22
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=8.9e-34 Score=286.57 Aligned_cols=202 Identities=30% Similarity=0.355 Sum_probs=158.9
Q ss_pred CCCCCCCChhhHHHhhcccccCCcccccccCcceeeecCCCeEEEEEEecCC-CCCHHHHHHHHHHHHHcCCcEEEEccC
Q 041372 18 SARDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWFN-LCYDADILSALDDAINDVVDILSLSFG 96 (564)
Q Consensus 18 sp~D~~GHGTHvAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ykv~~~~-~~~~~di~~Ai~~Ai~dgvdVIn~SlG 96 (564)
...|..||||||||||+|.........|+. .+.|+||+|+|+.+|++... .+..+++++||++|++.|+||||||||
T Consensus 56 ~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~g 133 (273)
T cd07485 56 DVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWG 133 (273)
T ss_pred CCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecCC
Confidence 446789999999999999865432222222 34679999999999998764 466788999999999999999999999
Q ss_pred CCCCCCCCccchhhHHHHHHHhC-------CcEEEEccCCCCCCC-CccccCCceEEeeeeccCCceeeEEEecCCeEEe
Q 041372 97 PSPPQPIYFEDSTSIGTFHAFQK-------GILVSASAGNSIFPG-TATNVAPGILTVAASSVDRKSYSNIYLGNSKILK 168 (564)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~a~~~-------Gv~vV~AAGN~g~~~-~~~~~ap~vitVga~~~~~~~~~~~~lg~~~~~~ 168 (564)
..... .+...+..++..+.++ |+++|+||||++... ..+...|++|+|++.+.
T Consensus 134 ~~~~~--~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~----------------- 194 (273)
T cd07485 134 GTGGG--IYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDT----------------- 194 (273)
T ss_pred CCCcc--ccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccC-----------------
Confidence 76421 2345566777888888 999999999998432 22556677777776421
Q ss_pred ceecCCCCCCceeEEEEcchhhHHhhhhhcCcccccccccCCCCCCCCCcCCCcCceEEEEEecCCCchhHHHHHHHHhc
Q 041372 169 GSSLNPLETKTFYGLIAGSTAAAQLQQQMQGSVSGYSTLSGFCKNNTLDHHTLIKGKIVVCTIEASTDNRREKCIFVRES 248 (564)
Q Consensus 169 g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gkIv~~~~~~~~~~~~~~~~~~~~~ 248 (564)
T Consensus 195 -------------------------------------------------------------------------------- 194 (273)
T cd07485 195 -------------------------------------------------------------------------------- 194 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEEcCCCCCCCcceecceEEECHHhHHHHHHHHhcCCCcEEEEccCeeeecccCCCcccccccCCCCCCCCcEEc
Q 041372 249 GGVGMILIDPNAKDIGFQFVIPATLIGQEEAQELQAYMTAGKNPIARIYPPQTILKTKPAPEMAAFSSMGPNIITADIIR 328 (564)
Q Consensus 249 Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~va~FSS~GP~~~kPdI~a 328 (564)
.+.++.||++|+.. ||.+
T Consensus 195 -----------------------------------------------------------~~~~~~~S~~g~~~---~i~a 212 (273)
T cd07485 195 -----------------------------------------------------------NDNKASFSNYGRWV---DIAA 212 (273)
T ss_pred -----------------------------------------------------------CCCcCccccCCCce---EEEe
Confidence 11235789999865 9999
Q ss_pred CCC-cccccccC-----CcceEEEeccccchhhHHHHHHHHHhhCCC-CCHHHHHHHHHhc
Q 041372 329 SPV-AIEATAEQ-----SVDYNIISGTSMSCPHVSAVAAIIKSHHPS-WSPAAIMSAIMTT 382 (564)
Q Consensus 329 Pg~-~i~s~~~~-----~~~y~~~SGTSMAaP~VAG~aALl~q~~P~-~sp~~IksaL~~T 382 (564)
||. .+.++... ...|..++|||||||+|||++|||+|++|. |+|.|||.+|++|
T Consensus 213 pG~~~i~~~~~~~~~~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 213 PGVGTILSTVPKLDGDGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred CCCCccccccccccCCCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 999 77776543 357999999999999999999999999999 9999999999986
No 23
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=3.7e-33 Score=284.97 Aligned_cols=103 Identities=29% Similarity=0.233 Sum_probs=83.1
Q ss_pred CCCCCCCChhhHHHhhcccccCCcccccccCcceeeecCCCeEEEEEEecCCCC-CHHHHHHHHHHHHHcCCcEEEEccC
Q 041372 18 SARDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWFNLC-YDADILSALDDAINDVVDILSLSFG 96 (564)
Q Consensus 18 sp~D~~GHGTHvAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ykv~~~~~~-~~~di~~Ai~~Ai~dgvdVIn~SlG 96 (564)
.+.|..||||||||+|+|+... .||||+|+|+.+|+++.... ...++++||++|+++|++|||+|||
T Consensus 48 ~~~d~~gHGT~vAgiia~~~~~------------~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G 115 (294)
T cd07482 48 DIVDKLGHGTAVAGQIAANGNI------------KGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLG 115 (294)
T ss_pred cCCCCCCcHhHHHHHHhcCCCC------------ceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCc
Confidence 4467799999999999987421 49999999999999876654 7888999999999999999999999
Q ss_pred CCCCCCC------CccchhhHHHHHHHhCCcEEEEccCCCCC
Q 041372 97 PSPPQPI------YFEDSTSIGTFHAFQKGILVSASAGNSIF 132 (564)
Q Consensus 97 ~~~~~~~------~~~~~~~~~~~~a~~~Gv~vV~AAGN~g~ 132 (564)
....... .....+..++..+.++|++||+||||+|.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~ 157 (294)
T cd07482 116 GYLIIGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGL 157 (294)
T ss_pred cCCCCCcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCc
Confidence 7532211 11234566677788999999999999983
No 24
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.8e-33 Score=277.93 Aligned_cols=196 Identities=30% Similarity=0.384 Sum_probs=158.4
Q ss_pred CCCCCCCCChhhHHHhhcccccCCcccccccCcceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHHcCCcEEEEcc
Q 041372 17 RSARDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWFNL-CYDADILSALDDAINDVVDILSLSF 95 (564)
Q Consensus 17 ~sp~D~~GHGTHvAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ykv~~~~~-~~~~di~~Ai~~Ai~dgvdVIn~Sl 95 (564)
.++.|..||||||||||+|....+. .+.|+||+|+|+.+|++...+ +...++++++++|++.+++|||+||
T Consensus 57 ~~~~d~~~HGT~va~ii~~~~~~~~--------~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~ 128 (259)
T cd07473 57 NDPMDDNGHGTHVAGIIGAVGNNGI--------GIAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSW 128 (259)
T ss_pred CCCCCCCCcHHHHHHHHHCcCCCCC--------ceEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCC
Confidence 3568899999999999999875432 247999999999999987654 6788999999999999999999999
Q ss_pred CCCCCCCCCccchhhHHHHHHHhCCcEEEEccCCCCCCC----Cccc--cCCceEEeeeeccCCceeeEEEecCCeEEec
Q 041372 96 GPSPPQPIYFEDSTSIGTFHAFQKGILVSASAGNSIFPG----TATN--VAPGILTVAASSVDRKSYSNIYLGNSKILKG 169 (564)
Q Consensus 96 G~~~~~~~~~~~~~~~~~~~a~~~Gv~vV~AAGN~g~~~----~~~~--~ap~vitVga~~~~~~~~~~~~lg~~~~~~g 169 (564)
|.... ...+..++.++.++|+++|+||||+|... ..+. ..|++|+||+.+
T Consensus 129 G~~~~-----~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~------------------- 184 (259)
T cd07473 129 GGGGP-----SQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATD------------------- 184 (259)
T ss_pred CCCCC-----CHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecC-------------------
Confidence 97642 45667788899999999999999998321 1111 234555555421
Q ss_pred eecCCCCCCceeEEEEcchhhHHhhhhhcCcccccccccCCCCCCCCCcCCCcCceEEEEEecCCCchhHHHHHHHHhcC
Q 041372 170 SSLNPLETKTFYGLIAGSTAAAQLQQQMQGSVSGYSTLSGFCKNNTLDHHTLIKGKIVVCTIEASTDNRREKCIFVRESG 249 (564)
Q Consensus 170 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gkIv~~~~~~~~~~~~~~~~~~~~~G 249 (564)
T Consensus 185 -------------------------------------------------------------------------------- 184 (259)
T cd07473 185 -------------------------------------------------------------------------------- 184 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEEcCCCCCCCcceecceEEECHHhHHHHHHHHhcCCCcEEEEccCeeeecccCCCcccccccCCCCCCCCcEEcC
Q 041372 250 GVGMILIDPNAKDIGFQFVIPATLIGQEEAQELQAYMTAGKNPIARIYPPQTILKTKPAPEMAAFSSMGPNIITADIIRS 329 (564)
Q Consensus 250 a~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~va~FSS~GP~~~kPdI~aP 329 (564)
..+....||++||. +||+.+|
T Consensus 185 ---------------------------------------------------------~~~~~~~~s~~g~~--~~~~~ap 205 (259)
T cd07473 185 ---------------------------------------------------------SNDALASFSNYGKK--TVDLAAP 205 (259)
T ss_pred ---------------------------------------------------------CCCCcCcccCCCCC--CcEEEec
Confidence 11233568999985 5799999
Q ss_pred CCcccccccCCcceEEEeccccchhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 041372 330 PVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPSWSPAAIMSAIMTTAT 384 (564)
Q Consensus 330 g~~i~s~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~IksaL~~TA~ 384 (564)
|..+++.... ..|..++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 206 G~~~~~~~~~-~~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 206 GVDILSTSPG-GGYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred cCCeEeccCC-CcEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 9999886554 58999999999999999999999999999999999999999984
No 25
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=1.1e-32 Score=276.74 Aligned_cols=195 Identities=33% Similarity=0.400 Sum_probs=161.5
Q ss_pred CCCCCCCChhhHHHhhcccccCCcccccccCcceeeecCCCeEEEEEEecCC-CCCHHHHHHHHHHHHHcCCcEEEEccC
Q 041372 18 SARDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWFN-LCYDADILSALDDAINDVVDILSLSFG 96 (564)
Q Consensus 18 sp~D~~GHGTHvAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ykv~~~~-~~~~~di~~Ai~~Ai~dgvdVIn~SlG 96 (564)
.+.|..||||||||||++....+ . .+.|+||+|+|+.+|++... .+...++++|++++++.|++|||+|||
T Consensus 63 ~~~d~~~HGT~vagii~~~~~~~---~-----~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iin~S~g 134 (260)
T cd07484 63 DAMDDNGHGTHVAGIIAAATNNG---T-----GVAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSLG 134 (260)
T ss_pred CCCCCCCcHHHHHHHHhCccCCC---C-----ceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEEEecCC
Confidence 36788999999999999876432 1 23799999999999998764 366788999999999999999999999
Q ss_pred CCCCCCCCccchhhHHHHHHHhCCcEEEEccCCCCC-CCCccccCCceEEeeeeccCCceeeEEEecCCeEEeceecCCC
Q 041372 97 PSPPQPIYFEDSTSIGTFHAFQKGILVSASAGNSIF-PGTATNVAPGILTVAASSVDRKSYSNIYLGNSKILKGSSLNPL 175 (564)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~a~~~Gv~vV~AAGN~g~-~~~~~~~ap~vitVga~~~~~~~~~~~~lg~~~~~~g~~~~~~ 175 (564)
... ....+..++..+.++|++||+||||+|. ....++..|++|+||+.+.+
T Consensus 135 ~~~-----~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~----------------------- 186 (260)
T cd07484 135 GGL-----GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD----------------------- 186 (260)
T ss_pred CCC-----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC-----------------------
Confidence 754 2355667778889999999999999983 35667777888888864310
Q ss_pred CCCceeEEEEcchhhHHhhhhhcCcccccccccCCCCCCCCCcCCCcCceEEEEEecCCCchhHHHHHHHHhcCceEEEE
Q 041372 176 ETKTFYGLIAGSTAAAQLQQQMQGSVSGYSTLSGFCKNNTLDHHTLIKGKIVVCTIEASTDNRREKCIFVRESGGVGMIL 255 (564)
Q Consensus 176 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gkIv~~~~~~~~~~~~~~~~~~~~~Ga~g~i~ 255 (564)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EcCCCCCCCcceecceEEECHHhHHHHHHHHhcCCCcEEEEccCeeeecccCCCcccccccCCCCCCCCcEEcCCCcccc
Q 041372 256 IDPNAKDIGFQFVIPATLIGQEEAQELQAYMTAGKNPIARIYPPQTILKTKPAPEMAAFSSMGPNIITADIIRSPVAIEA 335 (564)
Q Consensus 256 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~va~FSS~GP~~~kPdI~aPg~~i~s 335 (564)
+..+.||++|+.. |+.+||..+.+
T Consensus 187 -----------------------------------------------------~~~~~~s~~g~~~---~~~apG~~i~~ 210 (260)
T cd07484 187 -----------------------------------------------------DKRASFSNYGKWV---DVSAPGGGILS 210 (260)
T ss_pred -----------------------------------------------------CCcCCcCCCCCCc---eEEeCCCCcEe
Confidence 1225678888754 99999999987
Q ss_pred cccCCcceEEEeccccchhhHHHHHHHHHhhCCCCCHHHHHHHHHhccccc
Q 041372 336 TAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPSWSPAAIMSAIMTTATVL 386 (564)
Q Consensus 336 ~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~IksaL~~TA~~~ 386 (564)
.... ..|..++|||||||+|||++|||+|++| |++.+||.+|++||.++
T Consensus 211 ~~~~-~~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 211 TTPD-GDYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred ecCC-CCEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 7665 4899999999999999999999999999 99999999999999864
No 26
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=1.4e-32 Score=270.45 Aligned_cols=192 Identities=33% Similarity=0.417 Sum_probs=157.4
Q ss_pred CCCCCCCCChhhHHHhhcccccCCcccccccCcceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHHcCCcEEEEcc
Q 041372 17 RSARDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWFNL-CYDADILSALDDAINDVVDILSLSF 95 (564)
Q Consensus 17 ~sp~D~~GHGTHvAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ykv~~~~~-~~~~di~~Ai~~Ai~dgvdVIn~Sl 95 (564)
..+.|..+|||||||||++..... .+.|+||+|+|+.+|++...+ +...++++++++|++.|++|||+||
T Consensus 34 ~~~~~~~~HGT~vA~ii~~~~~~~---------~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~ 104 (229)
T cd07477 34 NDYQDGNGHGTHVAGIIAALDNGV---------GVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSL 104 (229)
T ss_pred CCCCCCCCCHHHHHHHHhcccCCC---------ccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECC
Confidence 356788999999999999986432 347999999999999987654 4567899999999999999999999
Q ss_pred CCCCCCCCCccchhhHHHHHHHhCCcEEEEccCCCCCC-CC--ccccCCceEEeeeeccCCceeeEEEecCCeEEeceec
Q 041372 96 GPSPPQPIYFEDSTSIGTFHAFQKGILVSASAGNSIFP-GT--ATNVAPGILTVAASSVDRKSYSNIYLGNSKILKGSSL 172 (564)
Q Consensus 96 G~~~~~~~~~~~~~~~~~~~a~~~Gv~vV~AAGN~g~~-~~--~~~~ap~vitVga~~~~~~~~~~~~lg~~~~~~g~~~ 172 (564)
|.... ...+..++..+.++|+++|+||||++.. .. .+...|++|+||+.+.+
T Consensus 105 g~~~~-----~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~-------------------- 159 (229)
T cd07477 105 GGPSD-----SPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN-------------------- 159 (229)
T ss_pred ccCCC-----CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC--------------------
Confidence 97532 3455667788899999999999999832 12 36677888888875311
Q ss_pred CCCCCCceeEEEEcchhhHHhhhhhcCcccccccccCCCCCCCCCcCCCcCceEEEEEecCCCchhHHHHHHHHhcCceE
Q 041372 173 NPLETKTFYGLIAGSTAAAQLQQQMQGSVSGYSTLSGFCKNNTLDHHTLIKGKIVVCTIEASTDNRREKCIFVRESGGVG 252 (564)
Q Consensus 173 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gkIv~~~~~~~~~~~~~~~~~~~~~Ga~g 252 (564)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEcCCCCCCCcceecceEEECHHhHHHHHHHHhcCCCcEEEEccCeeeecccCCCcccccccCCCCCCCCcEEcCCCc
Q 041372 253 MILIDPNAKDIGFQFVIPATLIGQEEAQELQAYMTAGKNPIARIYPPQTILKTKPAPEMAAFSSMGPNIITADIIRSPVA 332 (564)
Q Consensus 253 ~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~va~FSS~GP~~~kPdI~aPg~~ 332 (564)
.....||++|+. +|+.+||..
T Consensus 160 --------------------------------------------------------~~~~~~s~~g~~---~~~~apg~~ 180 (229)
T cd07477 160 --------------------------------------------------------NNRASFSSTGPE---VELAAPGVD 180 (229)
T ss_pred --------------------------------------------------------CCcCCccCCCCC---ceEEeCCCC
Confidence 112467888885 499999999
Q ss_pred ccccccCCcceEEEeccccchhhHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 041372 333 IEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPSWSPAAIMSAIMTT 382 (564)
Q Consensus 333 i~s~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~IksaL~~T 382 (564)
+.++... ..|..++|||||||+|||++|||+|++|++++.+||++|++|
T Consensus 181 i~~~~~~-~~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 181 ILSTYPN-NDYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred eEEecCC-CCEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 9887664 478999999999999999999999999999999999999976
No 27
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.1e-33 Score=280.26 Aligned_cols=99 Identities=23% Similarity=0.240 Sum_probs=74.7
Q ss_pred CCCCCCChhhHHHhhcccccCCcccccccCcceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHHH----cCCcEEEEc
Q 041372 19 ARDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWFNLCYDADILSALDDAIN----DVVDILSLS 94 (564)
Q Consensus 19 p~D~~GHGTHvAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ykv~~~~~~~~~di~~Ai~~Ai~----dgvdVIn~S 94 (564)
+.|++||||||||||+|..+ + +| +.||||+|+|+.+|++. .++++++|++|++ .++.+||||
T Consensus 47 ~~d~~gHGT~VAGiIaa~~n-~---~G-----~~GvAp~a~l~~i~v~~-----~~~~~~ai~~A~~~~~~~~v~~in~s 112 (277)
T cd04843 47 DQADSDHGTAVLGIIVAKDN-G---IG-----VTGIAHGAQAAVVSSTR-----VSNTADAILDAADYLSPGDVILLEMQ 112 (277)
T ss_pred CCCCCCCcchhheeeeeecC-C---Cc-----eeeeccCCEEEEEEecC-----CCCHHHHHHHHHhccCCCCEEEEEcc
Confidence 67899999999999999742 1 22 37999999999999974 3456777777776 346678999
Q ss_pred cCCCCCCC----CCccchhhHHHHHHHhCCcEEEEccCCCC
Q 041372 95 FGPSPPQP----IYFEDSTSIGTFHAFQKGILVSASAGNSI 131 (564)
Q Consensus 95 lG~~~~~~----~~~~~~~~~~~~~a~~~Gv~vV~AAGN~g 131 (564)
||+..... ......+..++.+|.++|+++|+||||++
T Consensus 113 ~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~ 153 (277)
T cd04843 113 TGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGG 153 (277)
T ss_pred ccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCC
Confidence 99853211 01233445577888899999999999997
No 28
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=1.9e-32 Score=274.11 Aligned_cols=188 Identities=31% Similarity=0.395 Sum_probs=157.0
Q ss_pred CCCCCCChhhHHHhhcccccCCcccccccCcceeeecCCCeEEEEEEecCC-CCCHHHHHHHHHHHHHcC-----CcEEE
Q 041372 19 ARDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWFN-LCYDADILSALDDAINDV-----VDILS 92 (564)
Q Consensus 19 p~D~~GHGTHvAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ykv~~~~-~~~~~di~~Ai~~Ai~dg-----vdVIn 92 (564)
+.|..||||||||||++.. .||||+|+|+.+|++... ....++++++++++++++ ++|||
T Consensus 59 ~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin 124 (255)
T cd04077 59 DSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVAN 124 (255)
T ss_pred CCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEE
Confidence 6788999999999999863 589999999999999866 355778999999999874 89999
Q ss_pred EccCCCCCCCCCccchhhHHHHHHHhCCcEEEEccCCCCCC--CCccccCCceEEeeeeccCCceeeEEEecCCeEEece
Q 041372 93 LSFGPSPPQPIYFEDSTSIGTFHAFQKGILVSASAGNSIFP--GTATNVAPGILTVAASSVDRKSYSNIYLGNSKILKGS 170 (564)
Q Consensus 93 ~SlG~~~~~~~~~~~~~~~~~~~a~~~Gv~vV~AAGN~g~~--~~~~~~ap~vitVga~~~~~~~~~~~~lg~~~~~~g~ 170 (564)
+|||... ...+..++.++.++|+++|+||||+|.. ...+...|++|+||+.+.
T Consensus 125 ~S~g~~~------~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~------------------- 179 (255)
T cd04077 125 MSLGGGA------STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDS------------------- 179 (255)
T ss_pred eCCCCCC------CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCC-------------------
Confidence 9999753 3566677888999999999999999832 334556677777776421
Q ss_pred ecCCCCCCceeEEEEcchhhHHhhhhhcCcccccccccCCCCCCCCCcCCCcCceEEEEEecCCCchhHHHHHHHHhcCc
Q 041372 171 SLNPLETKTFYGLIAGSTAAAQLQQQMQGSVSGYSTLSGFCKNNTLDHHTLIKGKIVVCTIEASTDNRREKCIFVRESGG 250 (564)
Q Consensus 171 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gkIv~~~~~~~~~~~~~~~~~~~~~Ga 250 (564)
T Consensus 180 -------------------------------------------------------------------------------- 179 (255)
T cd04077 180 -------------------------------------------------------------------------------- 179 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEEcCCCCCCCcceecceEEECHHhHHHHHHHHhcCCCcEEEEccCeeeecccCCCcccccccCCCCCCCCcEEcCC
Q 041372 251 VGMILIDPNAKDIGFQFVIPATLIGQEEAQELQAYMTAGKNPIARIYPPQTILKTKPAPEMAAFSSMGPNIITADIIRSP 330 (564)
Q Consensus 251 ~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~va~FSS~GP~~~kPdI~aPg 330 (564)
....+.||++||.. ||.|||
T Consensus 180 ---------------------------------------------------------~~~~~~~S~~g~~~---~i~apG 199 (255)
T cd04077 180 ---------------------------------------------------------DDARASFSNYGSCV---DIFAPG 199 (255)
T ss_pred ---------------------------------------------------------CCCccCcccCCCCC---cEEeCC
Confidence 11236789999876 999999
Q ss_pred CcccccccC-CcceEEEeccccchhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccc
Q 041372 331 VAIEATAEQ-SVDYNIISGTSMSCPHVSAVAAIIKSHHPSWSPAAIMSAIMTTATV 385 (564)
Q Consensus 331 ~~i~s~~~~-~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~IksaL~~TA~~ 385 (564)
..+.++... ...|..++|||||||+|||++|||+|++|++++++||.+|++||++
T Consensus 200 ~~i~~~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 200 VDILSAWIGSDTATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred CCeEecccCCCCcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 999876652 4589999999999999999999999999999999999999999973
No 29
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=1.1e-33 Score=286.91 Aligned_cols=232 Identities=31% Similarity=0.391 Sum_probs=174.9
Q ss_pred CCCCCCCCCChhhHHHhhcccccCCcccccccCcceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHH-HcCCcEEEEc
Q 041372 16 FRSARDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWFNLCYDADILSALDDAI-NDVVDILSLS 94 (564)
Q Consensus 16 ~~sp~D~~GHGTHvAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ykv~~~~~~~~~di~~Ai~~Ai-~dgvdVIn~S 94 (564)
.....|..||||||||||+|.. . .. .....|+||+|+|+.+|++...+....++++++++++ +++++|||+|
T Consensus 39 ~~~~~~~~~HGT~va~ii~~~~-~-~~-----~~~~~Gva~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S 111 (282)
T PF00082_consen 39 PSPSDDDNGHGTHVAGIIAGNG-G-NN-----GPGINGVAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLS 111 (282)
T ss_dssp TTSSSTSSSHHHHHHHHHHHTT-S-SS-----SSSETCSSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEEC
T ss_pred cCccccCCCccchhhhhccccc-c-cc-----ccccccccccccccccccccccccccccccchhhhhhhccCCcccccc
Confidence 4556788999999999999996 2 11 1123799999999999998776667888999999999 8999999999
Q ss_pred cCCCCCCC-CCccchhhHHHHHHHhCCcEEEEccCCCCCCC----CccccCCceEEeeeeccCCceeeEEEecCCeEEec
Q 041372 95 FGPSPPQP-IYFEDSTSIGTFHAFQKGILVSASAGNSIFPG----TATNVAPGILTVAASSVDRKSYSNIYLGNSKILKG 169 (564)
Q Consensus 95 lG~~~~~~-~~~~~~~~~~~~~a~~~Gv~vV~AAGN~g~~~----~~~~~ap~vitVga~~~~~~~~~~~~lg~~~~~~g 169 (564)
||...... ....+.+..+++.+.++|+++|+||||++... ..+..++++|+||+...
T Consensus 112 ~G~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~------------------ 173 (282)
T PF00082_consen 112 FGSNSGPPDPSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDN------------------ 173 (282)
T ss_dssp EEBEESSSHSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEET------------------
T ss_pred ccccccccccccccccccccccccccCcceeecccccccccccccccccccccccccccccc------------------
Confidence 98732111 12334456677789999999999999987321 23344566666665321
Q ss_pred eecCCCCCCceeEEEEcchhhHHhhhhhcCcccccccccCCCCCCCCCcCCCcCceEEEEEecCCCchhHHHHHHHHhcC
Q 041372 170 SSLNPLETKTFYGLIAGSTAAAQLQQQMQGSVSGYSTLSGFCKNNTLDHHTLIKGKIVVCTIEASTDNRREKCIFVRESG 249 (564)
Q Consensus 170 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gkIv~~~~~~~~~~~~~~~~~~~~~G 249 (564)
T Consensus 174 -------------------------------------------------------------------------------- 173 (282)
T PF00082_consen 174 -------------------------------------------------------------------------------- 173 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEEcCCCCCCCcceecceEEECHHhHHHHHHHHhcCCCcEEEEccCeeeecccCCCcccccccCCCC----CCCCc
Q 041372 250 GVGMILIDPNAKDIGFQFVIPATLIGQEEAQELQAYMTAGKNPIARIYPPQTILKTKPAPEMAAFSSMGPN----IITAD 325 (564)
Q Consensus 250 a~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~va~FSS~GP~----~~kPd 325 (564)
...+..||++|+. .+|||
T Consensus 174 ----------------------------------------------------------~~~~~~~s~~g~~~~~~~~~~d 195 (282)
T PF00082_consen 174 ----------------------------------------------------------NGQPASYSNYGGPSDDGRIKPD 195 (282)
T ss_dssp ----------------------------------------------------------TSSBSTTSSBSTTETTCTTCEE
T ss_pred ----------------------------------------------------------cccccccccccccccccccccc
Confidence 1123677888653 38999
Q ss_pred EEcCCCcccccccCC--cceEEEeccccchhhHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCcccccCCCCCCCCC
Q 041372 326 IIRSPVAIEATAEQS--VDYNIISGTSMSCPHVSAVAAIIKSHHPSWSPAAIMSAIMTTATVLNNNQQQIRRDPNGSQTT 403 (564)
Q Consensus 326 I~aPg~~i~s~~~~~--~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~IksaL~~TA~~~~~~~~~i~~~~~~~~~~ 403 (564)
|++||..+.+..+.. ..|..++|||||||+|||++|||+|++|+|++.+||.+|++||.+++... ....
T Consensus 196 i~a~G~~i~~~~~~~~~~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~---------~~~~ 266 (282)
T PF00082_consen 196 IAAPGGNILSAVPGSDRGSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN---------GEGY 266 (282)
T ss_dssp EEEECSSEEEEETTTESEEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT---------SSSS
T ss_pred cccccccccccccccccccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC---------CCCC
Confidence 999999997766543 35888999999999999999999999999999999999999999876211 1234
Q ss_pred CCCCCCCCccccccCC
Q 041372 404 PFDNGSGHINQVAAMN 419 (564)
Q Consensus 404 ~~~~GaG~Vn~~~A~~ 419 (564)
...||+|+||+.+|++
T Consensus 267 ~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 267 DNSYGWGLINAEKALN 282 (282)
T ss_dssp HHHHTTSBE-HHHHHH
T ss_pred CCCccCChhCHHHHhC
Confidence 4578999999999874
No 30
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.2e-32 Score=276.34 Aligned_cols=224 Identities=28% Similarity=0.325 Sum_probs=151.8
Q ss_pred CCCCCCChhhHHHhhcccccCCcccccccCcceeeecCCCeEEEEEEecCC-CCCHHHHHHHHHHHHHcCCcEEEEccCC
Q 041372 19 ARDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWFN-LCYDADILSALDDAINDVVDILSLSFGP 97 (564)
Q Consensus 19 p~D~~GHGTHvAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ykv~~~~-~~~~~di~~Ai~~Ai~dgvdVIn~SlG~ 97 (564)
+.|..||||||||||+|+... +...||||+|+|+.+|++... .+...++++||++|++.|++|||+|||.
T Consensus 42 ~~d~~gHGT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~ 112 (297)
T cd07480 42 VQDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGA 112 (297)
T ss_pred CCCCCCcHHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCC
Confidence 578899999999999998643 223699999999999998654 4566779999999999999999999997
Q ss_pred CCCC------C--CCccchhhHHHHHH---------------HhCCcEEEEccCCCCCCC-Cc-----cccCCceEEeee
Q 041372 98 SPPQ------P--IYFEDSTSIGTFHA---------------FQKGILVSASAGNSIFPG-TA-----TNVAPGILTVAA 148 (564)
Q Consensus 98 ~~~~------~--~~~~~~~~~~~~~a---------------~~~Gv~vV~AAGN~g~~~-~~-----~~~ap~vitVga 148 (564)
.... + ......++.....+ .++|++||+||||++... .. ....+.+++|++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~~ 192 (297)
T cd07480 113 DFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAA 192 (297)
T ss_pred CCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEEE
Confidence 5410 0 01112222222333 679999999999997311 00 000111111111
Q ss_pred eccCCceeeEEEecCCeEEeceecCCCCCCceeEEEEcchhhHHhhhhhcCcccccccccCCCCCCCCCcCCCcCceEEE
Q 041372 149 SSVDRKSYSNIYLGNSKILKGSSLNPLETKTFYGLIAGSTAAAQLQQQMQGSVSGYSTLSGFCKNNTLDHHTLIKGKIVV 228 (564)
Q Consensus 149 ~~~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gkIv~ 228 (564)
...
T Consensus 193 V~~----------------------------------------------------------------------------- 195 (297)
T cd07480 193 VGA----------------------------------------------------------------------------- 195 (297)
T ss_pred ECC-----------------------------------------------------------------------------
Confidence 100
Q ss_pred EEecCCCchhHHHHHHHHhcCceEEEEEcCCCCCCCcceecceEEECHHhHHHHHHHHhcCCCcEEEEccCeeeecccCC
Q 041372 229 CTIEASTDNRREKCIFVRESGGVGMILIDPNAKDIGFQFVIPATLIGQEEAQELQAYMTAGKNPIARIYPPQTILKTKPA 308 (564)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~ 308 (564)
.
T Consensus 196 -------------------------------------------------------------------------------~ 196 (297)
T cd07480 196 -------------------------------------------------------------------------------L 196 (297)
T ss_pred -------------------------------------------------------------------------------C
Confidence 0
Q ss_pred CcccccccCCCC-CCCCcEEcCCCcccccccCCcceEEEeccccchhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccc
Q 041372 309 PEMAAFSSMGPN-IITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPSWSPAAIMSAIMTTATVLN 387 (564)
Q Consensus 309 ~~va~FSS~GP~-~~kPdI~aPg~~i~s~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~IksaL~~TA~~~~ 387 (564)
.....|+++.+. ..+|||.|||..|.++... ..|..++|||||||+|||++|||+|++|++++.+++.+|+......-
T Consensus 197 ~~~~~~~~~~~~~~~~~dv~ApG~~i~s~~~~-~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~~~ 275 (297)
T cd07480 197 GRTGNFSAVANFSNGEVDIAAPGVDIVSAAPG-GGYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTAAR 275 (297)
T ss_pred CCCCCccccCCCCCCceEEEeCCCCeEeecCC-CcEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhhcc
Confidence 011122222222 2578999999999987765 48999999999999999999999999999999988888874332211
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCcccc
Q 041372 388 NNQQQIRRDPNGSQTTPFDNGSGHINQV 415 (564)
Q Consensus 388 ~~~~~i~~~~~~~~~~~~~~GaG~Vn~~ 415 (564)
.. .......+.++|+|++++.
T Consensus 276 ~~-------~~~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 276 TT-------QFAPGLDLPDRGVGLGLAP 296 (297)
T ss_pred cC-------CCCCCCChhhcCCceeecC
Confidence 00 1112245678999998864
No 31
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=3.5e-32 Score=277.66 Aligned_cols=217 Identities=27% Similarity=0.260 Sum_probs=162.1
Q ss_pred CCCCCCChhhHHHhhcccccCCcccccccCcceeeecCCCeEEEEEEecCCC--CCHHHHHHHHHHHHHcCCcEEEEccC
Q 041372 19 ARDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWFNL--CYDADILSALDDAINDVVDILSLSFG 96 (564)
Q Consensus 19 p~D~~GHGTHvAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ykv~~~~~--~~~~di~~Ai~~Ai~dgvdVIn~SlG 96 (564)
+.|..||||||||||+|....... ...+.|+||+|+|+.+|++...+ ....++..+++++.+.|++|||||||
T Consensus 50 ~~d~~~HGT~vAgiia~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G 124 (293)
T cd04842 50 KDDVDGHGTHVAGIIAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWG 124 (293)
T ss_pred CCCCCCCcchhheeeccCCcCCCc-----ccccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCC
Confidence 347899999999999998754321 11348999999999999987654 45667889999999999999999999
Q ss_pred CCCCCCCCccchhhHHHHHHH-h-CCcEEEEccCCCCCC----CCccccCCceEEeeeeccCCceeeEEEecCCeEEece
Q 041372 97 PSPPQPIYFEDSTSIGTFHAF-Q-KGILVSASAGNSIFP----GTATNVAPGILTVAASSVDRKSYSNIYLGNSKILKGS 170 (564)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~a~-~-~Gv~vV~AAGN~g~~----~~~~~~ap~vitVga~~~~~~~~~~~~lg~~~~~~g~ 170 (564)
..... .......++.++. + +|+++|+||||++.. ...+..+|++|+||+.+......
T Consensus 125 ~~~~~---~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~-------------- 187 (293)
T cd04842 125 SPVNN---GYTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSN-------------- 187 (293)
T ss_pred CCCcc---ccchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccc--------------
Confidence 86531 1123333444333 3 899999999999843 25667889999999875432210
Q ss_pred ecCCCCCCceeEEEEcchhhHHhhhhhcCcccccccccCCCCCCCCCcCCCcCceEEEEEecCCCchhHHHHHHHHhcCc
Q 041372 171 SLNPLETKTFYGLIAGSTAAAQLQQQMQGSVSGYSTLSGFCKNNTLDHHTLIKGKIVVCTIEASTDNRREKCIFVRESGG 250 (564)
Q Consensus 171 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gkIv~~~~~~~~~~~~~~~~~~~~~Ga 250 (564)
...|..
T Consensus 188 -------------------------------------~~~~~~------------------------------------- 193 (293)
T cd04842 188 -------------------------------------GEGGLG------------------------------------- 193 (293)
T ss_pred -------------------------------------cccccc-------------------------------------
Confidence 000000
Q ss_pred eEEEEEcCCCCCCCcceecceEEECHHhHHHHHHHHhcCCCcEEEEccCeeeecccCCCcccccccCCCCC---CCCcEE
Q 041372 251 VGMILIDPNAKDIGFQFVIPATLIGQEEAQELQAYMTAGKNPIARIYPPQTILKTKPAPEMAAFSSMGPNI---ITADII 327 (564)
Q Consensus 251 ~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~va~FSS~GP~~---~kPdI~ 327 (564)
.......++.||++||+. .||||+
T Consensus 194 -----------------------------------------------------~~~~~~~~~~~S~~G~~~~~~~~pdv~ 220 (293)
T cd04842 194 -----------------------------------------------------QSDNSDTVASFSSRGPTYDGRIKPDLV 220 (293)
T ss_pred -----------------------------------------------------ccCCCCccccccCcCCCCCCCcCCCEE
Confidence 001134568999999964 899999
Q ss_pred cCCCcccccc--------cCCcceEEEeccccchhhHHHHHHHHHhhC-----C---CCCHHHHHHHHHhccc
Q 041372 328 RSPVAIEATA--------EQSVDYNIISGTSMSCPHVSAVAAIIKSHH-----P---SWSPAAIMSAIMTTAT 384 (564)
Q Consensus 328 aPg~~i~s~~--------~~~~~y~~~SGTSMAaP~VAG~aALl~q~~-----P---~~sp~~IksaL~~TA~ 384 (564)
|||..+.+.. .....|...+|||||||||||++|||+|++ | .+++.++|++|++||+
T Consensus 221 ApG~~i~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 221 APGTGILSARSGGGGIGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred CCCCCeEeccCCCCCCCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 9999998774 234588999999999999999999999985 4 6777899999999985
No 32
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.98 E-value=1.3e-31 Score=262.59 Aligned_cols=184 Identities=25% Similarity=0.269 Sum_probs=148.2
Q ss_pred CCCCCCCCChhhHHHhhcccccCCcccccccCcceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHHcCCcEEEEcc
Q 041372 17 RSARDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWFNL-CYDADILSALDDAINDVVDILSLSF 95 (564)
Q Consensus 17 ~sp~D~~GHGTHvAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ykv~~~~~-~~~~di~~Ai~~Ai~dgvdVIn~Sl 95 (564)
..+.|..||||||||||++. +|+++|+.+|++...+ +..+++++|++||+++|++||||||
T Consensus 38 ~~~~d~~gHGT~vAgiia~~------------------~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~ 99 (222)
T cd07492 38 AEGGDKDGHGTACAGIIKKY------------------APEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSL 99 (222)
T ss_pred CCCCCCCCcHHHHHHHHHcc------------------CCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCC
Confidence 45568899999999999853 5999999999987654 6788899999999999999999999
Q ss_pred CCCCCCCCCccchhhHHHHHHHhCCcEEEEccCCCCCCCCccccCCceEEeeeeccCCceeeEEEecCCeEEeceecCCC
Q 041372 96 GPSPPQPIYFEDSTSIGTFHAFQKGILVSASAGNSIFPGTATNVAPGILTVAASSVDRKSYSNIYLGNSKILKGSSLNPL 175 (564)
Q Consensus 96 G~~~~~~~~~~~~~~~~~~~a~~~Gv~vV~AAGN~g~~~~~~~~ap~vitVga~~~~~~~~~~~~lg~~~~~~g~~~~~~ 175 (564)
|.... .....+..++.++.++|+++|+||||++.....+...|.+|+|++...++.
T Consensus 100 G~~~~---~~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~~Pa~~~~vi~V~~~~~~~~--------------------- 155 (222)
T cd07492 100 GGPGD---RDFPLLKELLEYAYKAGGIIVAAAPNNNDIGTPPASFPNVIGVKSDTADDP--------------------- 155 (222)
T ss_pred CCCCC---CcCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccCCceEEEEecCCCCC---------------------
Confidence 97643 123456777888999999999999999854444566677777776421100
Q ss_pred CCCceeEEEEcchhhHHhhhhhcCcccccccccCCCCCCCCCcCCCcCceEEEEEecCCCchhHHHHHHHHhcCceEEEE
Q 041372 176 ETKTFYGLIAGSTAAAQLQQQMQGSVSGYSTLSGFCKNNTLDHHTLIKGKIVVCTIEASTDNRREKCIFVRESGGVGMIL 255 (564)
Q Consensus 176 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gkIv~~~~~~~~~~~~~~~~~~~~~Ga~g~i~ 255 (564)
T Consensus 156 -------------------------------------------------------------------------------- 155 (222)
T cd07492 156 -------------------------------------------------------------------------------- 155 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EcCCCCCCCcceecceEEECHHhHHHHHHHHhcCCCcEEEEccCeeeecccCCCcccccccCCCCCCCCcEEcCCCcccc
Q 041372 256 IDPNAKDIGFQFVIPATLIGQEEAQELQAYMTAGKNPIARIYPPQTILKTKPAPEMAAFSSMGPNIITADIIRSPVAIEA 335 (564)
Q Consensus 256 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~va~FSS~GP~~~kPdI~aPg~~i~s 335 (564)
.+.++ .++++.+||..+.+
T Consensus 156 ----------------------------------------------------------~~~~~---~~~~~~apg~~i~~ 174 (222)
T cd07492 156 ----------------------------------------------------------KSFWY---IYVEFSADGVDIIA 174 (222)
T ss_pred ----------------------------------------------------------ccccc---CCceEEeCCCCeEe
Confidence 00001 23588999999987
Q ss_pred cccCCcceEEEeccccchhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 041372 336 TAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPSWSPAAIMSAIMTTAT 384 (564)
Q Consensus 336 ~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~IksaL~~TA~ 384 (564)
+... ..|..++|||||||||||++|||+|++|+|++.|||++|+.||+
T Consensus 175 ~~~~-~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 175 PAPH-GRYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred ecCC-CCEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 7665 48999999999999999999999999999999999999999984
No 33
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=9.6e-32 Score=288.53 Aligned_cols=237 Identities=26% Similarity=0.314 Sum_probs=168.9
Q ss_pred CCCChhhHHHhhcccccCCcccccccCcceeeecCCCeEEEEEEecCCC---CCHHHHHHHHHHHHHcCCcEEEEccCCC
Q 041372 22 SDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWFNL---CYDADILSALDDAINDVVDILSLSFGPS 98 (564)
Q Consensus 22 ~~GHGTHvAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ykv~~~~~---~~~~di~~Ai~~Ai~dgvdVIn~SlG~~ 98 (564)
..-|||||||||+|+..+.. ...||||+|+|+..++.+..- .+...+.+|+..+++..+||||||+|-.
T Consensus 309 Sg~HGTHVAgIa~anhpe~p--------~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~ 380 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPETP--------ELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGED 380 (1304)
T ss_pred CCCCcceehhhhccCCCCCc--------cccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence 45699999999999986432 347999999999999965432 3456689999999999999999999988
Q ss_pred CCCCCCccchhhHHHHHHHhCCcEEEEccCCCCCCCCccccCCceEEeeeeccCCceeeEEEecCCeEEeceecCCCCCC
Q 041372 99 PPQPIYFEDSTSIGTFHAFQKGILVSASAGNSIFPGTATNVAPGILTVAASSVDRKSYSNIYLGNSKILKGSSLNPLETK 178 (564)
Q Consensus 99 ~~~~~~~~~~~~~~~~~a~~~Gv~vV~AAGN~g~~~~~~~~ap~vitVga~~~~~~~~~~~~lg~~~~~~g~~~~~~~~~ 178 (564)
..+|. ....++..-+.+.++||++|+||||+| |-..||||..--.+ +.|-+| .
T Consensus 381 a~~pn-~GRviEl~~e~vnKr~vI~VsSAGN~G---------PaltTVGaPggtTs--svIgVG-------A-------- 433 (1304)
T KOG1114|consen 381 AHLPN-SGRVIELLRELVNKRGVIYVSSAGNNG---------PALTTVGAPGGTTS--SVIGVG-------A-------- 433 (1304)
T ss_pred CCCCC-cchHHHHHHHHhhhccEEEEEeCCCCC---------CceeeccCCCCccc--ceEeee-------e--------
Confidence 77653 345566555666789999999999999 33445554210000 000000 0
Q ss_pred ceeEEEEcchhhHHhhhhhcCcccccccccCCCCCCCCCcCCCcCceEEEEEecCCCchhHHHHHHHHhcCceEEEEEcC
Q 041372 179 TFYGLIAGSTAAAQLQQQMQGSVSGYSTLSGFCKNNTLDHHTLIKGKIVVCTIEASTDNRREKCIFVRESGGVGMILIDP 258 (564)
Q Consensus 179 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gkIv~~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~ 258 (564)
+.
T Consensus 434 -----YV------------------------------------------------------------------------- 435 (1304)
T KOG1114|consen 434 -----YV------------------------------------------------------------------------- 435 (1304)
T ss_pred -----ec-------------------------------------------------------------------------
Confidence 00
Q ss_pred CCCCCCcceecceEEECHHhHHHHHHHHhcCCCcEEEEccCeeeecccCCCcccccccCCCCC---CCCcEEcCCCcccc
Q 041372 259 NAKDIGFQFVIPATLIGQEEAQELQAYMTAGKNPIARIYPPQTILKTKPAPEMAAFSSMGPNI---ITADIIRSPVAIEA 335 (564)
Q Consensus 259 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~va~FSS~GP~~---~kPdI~aPg~~i~s 335 (564)
+..-.+...+.. .+-...+..+|||||+. +--.|.|||++|-+
T Consensus 436 ----------------sp~mm~a~y~~~------------------e~vp~~~YtWsSRgP~~DG~lGVsi~APggAiAs 481 (1304)
T KOG1114|consen 436 ----------------SPGMMQAEYSVR------------------EPVPSNPYTWSSRGPCLDGDLGVSISAPGGAIAS 481 (1304)
T ss_pred ----------------CHHHHHhhhhhh------------------ccCCCCccccccCCCCcCCCcceEEecCCccccC
Confidence 000000000000 00022367899999976 66689999999854
Q ss_pred cccC--CcceEEEeccccchhhHHHHHHHH----HhhCCCCCHHHHHHHHHhccccccCCcccccCCCCCCCCCCCCCCC
Q 041372 336 TAEQ--SVDYNIISGTSMSCPHVSAVAAII----KSHHPSWSPAAIMSAIMTTATVLNNNQQQIRRDPNGSQTTPFDNGS 409 (564)
Q Consensus 336 ~~~~--~~~y~~~SGTSMAaP~VAG~aALl----~q~~P~~sp~~IksaL~~TA~~~~~~~~~i~~~~~~~~~~~~~~Ga 409 (564)
++. ...-..|+|||||+|+++|.+||| ||.+-.|+|..||.||++||+++++ ..+|.||.
T Consensus 482 -VP~~tlq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~-------------id~faqG~ 547 (1304)
T KOG1114|consen 482 -VPQYTLQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGD-------------IDSFAQGQ 547 (1304)
T ss_pred -CchhhhhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCc-------------cchhccCc
Confidence 332 234568999999999999999998 6688899999999999999998863 26799999
Q ss_pred CCccccccCC
Q 041372 410 GHINQVAAMN 419 (564)
Q Consensus 410 G~Vn~~~A~~ 419 (564)
|+|++.+|.+
T Consensus 548 GmlqVdkAyE 557 (1304)
T KOG1114|consen 548 GMLQVDKAYE 557 (1304)
T ss_pred ceeehhHHHH
Confidence 9999999986
No 34
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=99.97 E-value=9e-32 Score=275.29 Aligned_cols=124 Identities=24% Similarity=0.189 Sum_probs=83.5
Q ss_pred CCCC--CCCCChhhHHHhhcccccCCcccccccCcceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHHHcCCcEEEEc
Q 041372 17 RSAR--DSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWFNLCYDADILSALDDAINDVVDILSLS 94 (564)
Q Consensus 17 ~sp~--D~~GHGTHvAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ykv~~~~~~~~~di~~Ai~~Ai~dgvdVIn~S 94 (564)
..|+ |..||||||||||+|..... .| ..||||+|+|+.+|++... ..+..+..++.++.+ .++|||||
T Consensus 76 ~~~~~~~~~gHGT~vAgiiag~~~~~---~~-----~~GvAp~a~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~Vin~S 145 (297)
T cd04059 76 PTPRYDDDNSHGTRCAGEIAAVGNNG---IC-----GVGVAPGAKLGGIRMLDGD-VTDVVEAESLGLNPD-YIDIYSNS 145 (297)
T ss_pred CCCccccccccCcceeeEEEeecCCC---cc-----cccccccceEeEEEecCCc-cccHHHHHHHhcccC-CceEEECC
Confidence 3444 88999999999999986432 12 3799999999999998654 344455666666554 46999999
Q ss_pred cCCCCCCC--CCccchhhHHHHHHHh-----CCcEEEEccCCCCCCC-----CccccCCceEEeeeec
Q 041372 95 FGPSPPQP--IYFEDSTSIGTFHAFQ-----KGILVSASAGNSIFPG-----TATNVAPGILTVAASS 150 (564)
Q Consensus 95 lG~~~~~~--~~~~~~~~~~~~~a~~-----~Gv~vV~AAGN~g~~~-----~~~~~ap~vitVga~~ 150 (564)
||...... .........++.++.+ +|++||+||||+|... ......|++|+|||.+
T Consensus 146 ~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~ 213 (297)
T cd04059 146 WGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVT 213 (297)
T ss_pred CCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeC
Confidence 99764321 1122233444555544 6999999999998411 1223456777777654
No 35
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.97 E-value=1.8e-31 Score=264.76 Aligned_cols=113 Identities=25% Similarity=0.245 Sum_probs=90.1
Q ss_pred CCCCCChhhHHHhhcccccCCcccccccCcceeeecCCCeEEEEEEecCCC-------CCHHHHHHHHHHHHHcCCcEEE
Q 041372 20 RDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWFNL-------CYDADILSALDDAINDVVDILS 92 (564)
Q Consensus 20 ~D~~GHGTHvAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ykv~~~~~-------~~~~di~~Ai~~Ai~dgvdVIn 92 (564)
.|..||||||||||+ |+||+|+|+.+|++...+ +...++++||+||+++|+||||
T Consensus 46 ~d~~gHGT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn 107 (247)
T cd07491 46 VSADGHGTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIIS 107 (247)
T ss_pred CCCCCcHHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEE
Confidence 578999999999995 579999999999987543 4567899999999999999999
Q ss_pred EccCCCCCCC-CCccchhhHHHHHHHhCCcEEEEccCCCCCCC----CccccCCceEEeeeec
Q 041372 93 LSFGPSPPQP-IYFEDSTSIGTFHAFQKGILVSASAGNSIFPG----TATNVAPGILTVAASS 150 (564)
Q Consensus 93 ~SlG~~~~~~-~~~~~~~~~~~~~a~~~Gv~vV~AAGN~g~~~----~~~~~ap~vitVga~~ 150 (564)
||||...... ......+..++.+|.++|++||+||||+|... ..+...|++|+|||.+
T Consensus 108 ~S~g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~ 170 (247)
T cd07491 108 MSWTIKKPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAAD 170 (247)
T ss_pred eeeecccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeC
Confidence 9999754210 01245778888999999999999999998432 2345667888888753
No 36
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=99.97 E-value=3.6e-31 Score=265.91 Aligned_cols=202 Identities=29% Similarity=0.308 Sum_probs=156.1
Q ss_pred CCCCCCCChhhHHHhhcccccCCcccccccCcceeeecCCCeEEEEEEecCC--CCCHHHHHHHHHHHHHcCCcEEEEcc
Q 041372 18 SARDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWFN--LCYDADILSALDDAINDVVDILSLSF 95 (564)
Q Consensus 18 sp~D~~GHGTHvAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ykv~~~~--~~~~~di~~Ai~~Ai~dgvdVIn~Sl 95 (564)
...|..+|||||||+|+|.... ..+.|+||+|+|+.+|+++.. .+...++.++++++++.++||||+||
T Consensus 41 ~~~~~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~ 111 (267)
T cd04848 41 SNGDGDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSW 111 (267)
T ss_pred CCCCCCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccC
Confidence 4567899999999999998643 234899999999999998875 35567789999999999999999999
Q ss_pred CCCCCCCC----------CccchhhHHHHHHHhCCcEEEEccCCCCCCCC----------ccccCCceEEeeeeccCCce
Q 041372 96 GPSPPQPI----------YFEDSTSIGTFHAFQKGILVSASAGNSIFPGT----------ATNVAPGILTVAASSVDRKS 155 (564)
Q Consensus 96 G~~~~~~~----------~~~~~~~~~~~~a~~~Gv~vV~AAGN~g~~~~----------~~~~ap~vitVga~~~~~~~ 155 (564)
|....... .....+...+..+.++|+++|+||||++.... .+...|.+|+||+.+.+.
T Consensus 112 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~-- 189 (267)
T cd04848 112 GGNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG-- 189 (267)
T ss_pred CCCCcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC--
Confidence 98653211 13455666778889999999999999973211 112334555555543211
Q ss_pred eeEEEecCCeEEeceecCCCCCCceeEEEEcchhhHHhhhhhcCcccccccccCCCCCCCCCcCCCcCceEEEEEecCCC
Q 041372 156 YSNIYLGNSKILKGSSLNPLETKTFYGLIAGSTAAAQLQQQMQGSVSGYSTLSGFCKNNTLDHHTLIKGKIVVCTIEAST 235 (564)
Q Consensus 156 ~~~~~lg~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gkIv~~~~~~~~ 235 (564)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhHHHHHHHHhcCceEEEEEcCCCCCCCcceecceEEECHHhHHHHHHHHhcCCCcEEEEccCeeeecccCCCcccc--
Q 041372 236 DNRREKCIFVRESGGVGMILIDPNAKDIGFQFVIPATLIGQEEAQELQAYMTAGKNPIARIYPPQTILKTKPAPEMAA-- 313 (564)
Q Consensus 236 ~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~va~-- 313 (564)
....
T Consensus 190 --------------------------------------------------------------------------~~~~~~ 195 (267)
T cd04848 190 --------------------------------------------------------------------------TIASYS 195 (267)
T ss_pred --------------------------------------------------------------------------Cccccc
Confidence 1122
Q ss_pred cccCCCCCCCCcEEcCCCcccccccC-CcceEEEeccccchhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 041372 314 FSSMGPNIITADIIRSPVAIEATAEQ-SVDYNIISGTSMSCPHVSAVAAIIKSHHPSWSPAAIMSAIMTTAT 384 (564)
Q Consensus 314 FSS~GP~~~kPdI~aPg~~i~s~~~~-~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~IksaL~~TA~ 384 (564)
||++|+....+.+.+||..+.+.... ...|..++|||||||+|||++|||+|++|+++++|||++|++||+
T Consensus 196 ~s~~~~~~~~~~~~apG~~i~~~~~~~~~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 196 YSNRCGVAANWCLAAPGENIYSTDPDGGNGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred ccccchhhhhheeecCcCceeecccCCCCcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 47777665566789999988887662 357889999999999999999999999999999999999999984
No 37
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.97 E-value=1.5e-31 Score=264.70 Aligned_cols=115 Identities=20% Similarity=0.139 Sum_probs=81.5
Q ss_pred CCCCCCCChhhHHHhhcccccCCcccccccCcceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHH--HHcCCcEEEEcc
Q 041372 18 SARDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWFNLCYDADILSALDDA--INDVVDILSLSF 95 (564)
Q Consensus 18 sp~D~~GHGTHvAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ykv~~~~~~~~~di~~Ai~~A--i~dgvdVIn~Sl 95 (564)
...|.+||||||||||||.. |++|+++|+..++... ....+.++++|+ .+.+++||||||
T Consensus 32 ~~~~~~~HGThVAgiiag~~---------------~~~p~a~~~~~~~~~~---~~~~~~~~i~~~~~~~~gv~VINmS~ 93 (247)
T cd07488 32 RNNTFDDHATLVASIMGGRD---------------GGLPAVNLYSSAFGIK---SNNGQWQECLEAQQNGNNVKIINHSY 93 (247)
T ss_pred CCCCCCCHHHHHHHHHHhcc---------------CCCCccceehhhhCCC---CCCccHHHHHHHHHhcCCceEEEeCC
Confidence 46789999999999999873 5579999987655211 223456777787 677999999999
Q ss_pred CCCCCCCC----CccchhhHHHHHHHhC-CcEEEEccCCCCCCC------CccccCCceEEeeeec
Q 041372 96 GPSPPQPI----YFEDSTSIGTFHAFQK-GILVSASAGNSIFPG------TATNVAPGILTVAASS 150 (564)
Q Consensus 96 G~~~~~~~----~~~~~~~~~~~~a~~~-Gv~vV~AAGN~g~~~------~~~~~ap~vitVga~~ 150 (564)
|....... +..+.+..+++.+.++ |+++|+||||+|... ..+..++.+|+|||.+
T Consensus 94 G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d 159 (247)
T cd07488 94 GEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTD 159 (247)
T ss_pred ccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEec
Confidence 97643210 1223456667776666 999999999998421 1244567788888754
No 38
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7e-31 Score=264.43 Aligned_cols=187 Identities=27% Similarity=0.326 Sum_probs=157.8
Q ss_pred CCCCCCChhhHHHhhcccccCCcccccccCcceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHHc---------CC
Q 041372 19 ARDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWFNL-CYDADILSALDDAIND---------VV 88 (564)
Q Consensus 19 p~D~~GHGTHvAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ykv~~~~~-~~~~di~~Ai~~Ai~d---------gv 88 (564)
-+|++||||||||+|++.. -|||-+++|+++||+.++| +..+|+++++|++++. +.
T Consensus 253 ~~D~nGHGTH~AG~I~sKt--------------~GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~ 318 (501)
T KOG1153|consen 253 DEDCNGHGTHVAGLIGSKT--------------FGVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKK 318 (501)
T ss_pred ccccCCCcceeeeeeeccc--------------cccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCC
Confidence 3689999999999999885 4889999999999998875 6689999999999976 45
Q ss_pred cEEEEccCCCCCCCCCccchhhHHHHHHHhCCcEEEEccCCCC--CCCCccccCCceEEeeeeccCCceeeEEEecCCeE
Q 041372 89 DILSLSFGPSPPQPIYFEDSTSIGTFHAFQKGILVSASAGNSI--FPGTATNVAPGILTVAASSVDRKSYSNIYLGNSKI 166 (564)
Q Consensus 89 dVIn~SlG~~~~~~~~~~~~~~~~~~~a~~~Gv~vV~AAGN~g--~~~~~~~~ap~vitVga~~~~~~~~~~~~lg~~~~ 166 (564)
.|.|||+|+. ..-.+..|+++|.+.||++++||||+- ...+.+..+..+|||||++.
T Consensus 319 sv~NlSlGg~------~S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~--------------- 377 (501)
T KOG1153|consen 319 SVANLSLGGF------RSAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTK--------------- 377 (501)
T ss_pred eEEEEecCCc------ccHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEeccccc---------------
Confidence 7999999985 346788999999999999999999996 35566777888899998641
Q ss_pred EeceecCCCCCCceeEEEEcchhhHHhhhhhcCcccccccccCCCCCCCCCcCCCcCceEEEEEecCCCchhHHHHHHHH
Q 041372 167 LKGSSLNPLETKTFYGLIAGSTAAAQLQQQMQGSVSGYSTLSGFCKNNTLDHHTLIKGKIVVCTIEASTDNRREKCIFVR 246 (564)
Q Consensus 167 ~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gkIv~~~~~~~~~~~~~~~~~~~ 246 (564)
T Consensus 378 -------------------------------------------------------------------------------- 377 (501)
T KOG1153|consen 378 -------------------------------------------------------------------------------- 377 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCceEEEEEcCCCCCCCcceecceEEECHHhHHHHHHHHhcCCCcEEEEccCeeeecccCCCcccccccCCCCCCCCcE
Q 041372 247 ESGGVGMILIDPNAKDIGFQFVIPATLIGQEEAQELQAYMTAGKNPIARIYPPQTILKTKPAPEMAAFSSMGPNIITADI 326 (564)
Q Consensus 247 ~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~va~FSS~GP~~~kPdI 326 (564)
.+.++.||+||+.. ||
T Consensus 378 -------------------------------------------------------------~D~iA~FSN~G~CV---di 393 (501)
T KOG1153|consen 378 -------------------------------------------------------------NDTIAFFSNWGKCV---DI 393 (501)
T ss_pred -------------------------------------------------------------ccchhhhcCcccee---ee
Confidence 12468999999998 99
Q ss_pred EcCCCcccccccC-CcceEEEeccccchhhHHHHHHHHHhhCCC---------CCHHHHHHHHHhccc
Q 041372 327 IRSPVAIEATAEQ-SVDYNIISGTSMSCPHVSAVAAIIKSHHPS---------WSPAAIMSAIMTTAT 384 (564)
Q Consensus 327 ~aPg~~i~s~~~~-~~~y~~~SGTSMAaP~VAG~aALl~q~~P~---------~sp~~IksaL~~TA~ 384 (564)
-|||++|+|++.. ...-.++||||||+|||||++|..+..+|. .||.++|..+..=..
T Consensus 394 FAPGv~IlSs~iGs~~at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 394 FAPGVNILSSWIGSNNATAILSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred ecCchhhhhhhhcCccchheeecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 9999999998864 346789999999999999999999998883 378888877665443
No 39
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.94 E-value=1e-25 Score=221.41 Aligned_cols=195 Identities=31% Similarity=0.386 Sum_probs=151.9
Q ss_pred CCCCCCCChhhHHHhhcccccCCcccccccCcceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHH-HcCCcEEEEcc
Q 041372 18 SARDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWFNL-CYDADILSALDDAI-NDVVDILSLSF 95 (564)
Q Consensus 18 sp~D~~GHGTHvAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ykv~~~~~-~~~~di~~Ai~~Ai-~dgvdVIn~Sl 95 (564)
...|..+||||||++|++...... ..|+||+++|+.+|+..... ....++++|+++++ +.+++|||+||
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~~~---------~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~ 109 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANNGG---------GVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSL 109 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCCCC---------CEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCC
Confidence 456789999999999999864321 17999999999999976544 45778999999999 99999999999
Q ss_pred CCCCCCCCCccchhhHHHHHHHhC-CcEEEEccCCCCCCC----CccccCCceEEeeeeccCCceeeEEEecCCeEEece
Q 041372 96 GPSPPQPIYFEDSTSIGTFHAFQK-GILVSASAGNSIFPG----TATNVAPGILTVAASSVDRKSYSNIYLGNSKILKGS 170 (564)
Q Consensus 96 G~~~~~~~~~~~~~~~~~~~a~~~-Gv~vV~AAGN~g~~~----~~~~~ap~vitVga~~~~~~~~~~~~lg~~~~~~g~ 170 (564)
|..... ....+...+..+.++ |+++|+||||.+... ..+...|++|+||+.+.+....
T Consensus 110 g~~~~~---~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~~~~-------------- 172 (241)
T cd00306 110 GGPGSP---PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDGTPA-------------- 172 (241)
T ss_pred CCCCCC---CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCCCcc--------------
Confidence 986431 234566677777777 999999999998433 3667788999999764321100
Q ss_pred ecCCCCCCceeEEEEcchhhHHhhhhhcCcccccccccCCCCCCCCCcCCCcCceEEEEEecCCCchhHHHHHHHHhcCc
Q 041372 171 SLNPLETKTFYGLIAGSTAAAQLQQQMQGSVSGYSTLSGFCKNNTLDHHTLIKGKIVVCTIEASTDNRREKCIFVRESGG 250 (564)
Q Consensus 171 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gkIv~~~~~~~~~~~~~~~~~~~~~Ga 250 (564)
T Consensus 173 -------------------------------------------------------------------------------- 172 (241)
T cd00306 173 -------------------------------------------------------------------------------- 172 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEEcCCCCCCCcceecceEEECHHhHHHHHHHHhcCCCcEEEEccCeeeecccCCCcccccccCCCCCCCCcEEcCC
Q 041372 251 VGMILIDPNAKDIGFQFVIPATLIGQEEAQELQAYMTAGKNPIARIYPPQTILKTKPAPEMAAFSSMGPNIITADIIRSP 330 (564)
Q Consensus 251 ~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~va~FSS~GP~~~kPdI~aPg 330 (564)
..++.+| .+|++.+||
T Consensus 173 -------------------------------------------------------------~~~~~~~---~~~~~~apg 188 (241)
T cd00306 173 -------------------------------------------------------------SPSSNGG---AGVDIAAPG 188 (241)
T ss_pred -------------------------------------------------------------CCcCCCC---CCceEEeCc
Confidence 0122222 366999999
Q ss_pred Cccccc-ccCCcceEEEeccccchhhHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 041372 331 VAIEAT-AEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPSWSPAAIMSAIMTT 382 (564)
Q Consensus 331 ~~i~s~-~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~IksaL~~T 382 (564)
..+... ......|..++|||||||+|||++|||+|++|++++.++|.+|++|
T Consensus 189 ~~~~~~~~~~~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 189 GDILSSPTTGGGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred CCccCcccCCCCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 888663 2224588999999999999999999999999999999999999875
No 40
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=5.6e-25 Score=227.64 Aligned_cols=219 Identities=23% Similarity=0.304 Sum_probs=169.2
Q ss_pred CCCCCCCCChhhHHHhhcccccCCcccccccCcceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHHcCCcEEEEcc
Q 041372 17 RSARDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWFNL-CYDADILSALDDAINDVVDILSLSF 95 (564)
Q Consensus 17 ~sp~D~~GHGTHvAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ykv~~~~~-~~~~di~~Ai~~Ai~dgvdVIn~Sl 95 (564)
++-.|..||||.|||+|||...- .|.||+++|+++|||.+.. .+.+..+.||++||...+||+|+|+
T Consensus 232 ~tLdD~lgHGTFVAGvia~~~ec------------~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSI 299 (1033)
T KOG4266|consen 232 DTLDDNLGHGTFVAGVIAGRNEC------------LGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSI 299 (1033)
T ss_pred cccccCcccceeEeeeeccchhh------------cccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeecc
Confidence 46678899999999999998621 5889999999999997654 6688899999999999999999999
Q ss_pred CCCCCCCCCccchhhHHHHHHHhCCcEEEEccCCCCC-CCCccccCCceEEeeeeccCCceeeEEEecCCeEEeceecCC
Q 041372 96 GPSPPQPIYFEDSTSIGTFHAFQKGILVSASAGNSIF-PGTATNVAPGILTVAASSVDRKSYSNIYLGNSKILKGSSLNP 174 (564)
Q Consensus 96 G~~~~~~~~~~~~~~~~~~~a~~~Gv~vV~AAGN~g~-~~~~~~~ap~vitVga~~~~~~~~~~~~lg~~~~~~g~~~~~ 174 (564)
|++. |.+.++-.-+......+|++|.|+||+|. .++..|.+
T Consensus 300 GGPD----fmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPa---------------------------------- 341 (1033)
T KOG4266|consen 300 GGPD----FMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPA---------------------------------- 341 (1033)
T ss_pred CCcc----cccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcc----------------------------------
Confidence 9854 56667666677788899999999999992 12211111
Q ss_pred CCCCceeEEEEcchhhHHhhhhhcCcccccccccCCCCCCCCCcCCCcCceEEEEEecCCCchhHHHHHHHHhcCceEEE
Q 041372 175 LETKTFYGLIAGSTAAAQLQQQMQGSVSGYSTLSGFCKNNTLDHHTLIKGKIVVCTIEASTDNRREKCIFVRESGGVGMI 254 (564)
Q Consensus 175 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gkIv~~~~~~~~~~~~~~~~~~~~~Ga~g~i 254 (564)
+..+.|=
T Consensus 342 ----------------------------------------------DQsDViG--------------------------- 348 (1033)
T KOG4266|consen 342 ----------------------------------------------DQSDVIG--------------------------- 348 (1033)
T ss_pred ----------------------------------------------cccceee---------------------------
Confidence 1111110
Q ss_pred EEcCCCCCCCcceecceEEECHHhHHHHHHHHhcCCCcEEEEccCeeeecccCCCcccccccCCCC---------CCCCc
Q 041372 255 LIDPNAKDIGFQFVIPATLIGQEEAQELQAYMTAGKNPIARIYPPQTILKTKPAPEMAAFSSMGPN---------IITAD 325 (564)
Q Consensus 255 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~va~FSS~GP~---------~~kPd 325 (564)
+.+....+.+|.|||||=+ ++|||
T Consensus 349 -----------------------------------------------VGGIdfdD~IA~FSSRGMtTWELP~GYGRmkpD 381 (1033)
T KOG4266|consen 349 -----------------------------------------------VGGIDFDDHIASFSSRGMTTWELPHGYGRMKPD 381 (1033)
T ss_pred -----------------------------------------------eccccccchhhhhccCCcceeecCCcccccCCc
Confidence 0011224578999999953 48999
Q ss_pred EEcCCCcccccccCCcceEEEeccccchhhHHHHHHHHHh----hCCCCCHHHHHHHHHhccccccCCcccccCCCCCCC
Q 041372 326 IIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKS----HHPSWSPAAIMSAIMTTATVLNNNQQQIRRDPNGSQ 401 (564)
Q Consensus 326 I~aPg~~i~s~~~~~~~y~~~SGTSMAaP~VAG~aALl~q----~~P~~sp~~IksaL~~TA~~~~~~~~~i~~~~~~~~ 401 (564)
|++.|..+....-+ .....+||||.|+|.|||+++||-+ +.--+.|+.+|.+|...|..+..
T Consensus 382 iVtYG~~v~GS~v~-~GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg------------- 447 (1033)
T KOG4266|consen 382 IVTYGRDVMGSKVS-TGCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPG------------- 447 (1033)
T ss_pred eEeeccccccCccc-ccchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCC-------------
Confidence 99999887654333 3678899999999999999999965 34457999999999999997753
Q ss_pred CCCCCCCCCCccccccCC
Q 041372 402 TTPFDNGSGHINQVAAMN 419 (564)
Q Consensus 402 ~~~~~~GaG~Vn~~~A~~ 419 (564)
..-|.||+|++|..++++
T Consensus 448 ~NMfEQGaGkldLL~syq 465 (1033)
T KOG4266|consen 448 PNMFEQGAGKLDLLESYQ 465 (1033)
T ss_pred CchhhccCcchhHHHHHH
Confidence 345899999999988876
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=9.7e-18 Score=182.46 Aligned_cols=200 Identities=33% Similarity=0.406 Sum_probs=146.9
Q ss_pred CCCCCCChhhHHHhhcccccCCcccccccCcceeeecCCCeEEEEEEecCC-C-CCHHHHHHHHHHHHHcC--CcEEEEc
Q 041372 19 ARDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWFN-L-CYDADILSALDDAINDV--VDILSLS 94 (564)
Q Consensus 19 p~D~~GHGTHvAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ykv~~~~-~-~~~~di~~Ai~~Ai~dg--vdVIn~S 94 (564)
..|..+|||||++++++....+ .....|+||+++++.+|++... + ....+++++++++++.+ +++||||
T Consensus 179 ~~d~~~hGt~vag~ia~~~~~~-------~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s 251 (508)
T COG1404 179 FLDDNGHGTHVAGTIAAVIFDN-------GAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLS 251 (508)
T ss_pred CCCCCCCcceeeeeeeeecccC-------CCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEec
Confidence 5799999999999999843111 1124799999999999998754 2 44667899999999999 9999999
Q ss_pred cCCCCCCCCCccchhhHHHHHHHhCC-cEEEEccCCCCCCCCc-----cccC--CceEEeeeeccCCceeeEEEecCCeE
Q 041372 95 FGPSPPQPIYFEDSTSIGTFHAFQKG-ILVSASAGNSIFPGTA-----TNVA--PGILTVAASSVDRKSYSNIYLGNSKI 166 (564)
Q Consensus 95 lG~~~~~~~~~~~~~~~~~~~a~~~G-v~vV~AAGN~g~~~~~-----~~~a--p~vitVga~~~~~~~~~~~~lg~~~~ 166 (564)
+|.. ........+..++..++..| +++|+++||.+..... +... +.+++|++.
T Consensus 252 ~g~~--~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~----------------- 312 (508)
T COG1404 252 LGGS--LSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGAL----------------- 312 (508)
T ss_pred CCCC--ccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecC-----------------
Confidence 9986 11123455666777777777 9999999999832210 0000 011111111
Q ss_pred EeceecCCCCCCceeEEEEcchhhHHhhhhhcCcccccccccCCCCCCCCCcCCCcCceEEEEEecCCCchhHHHHHHHH
Q 041372 167 LKGSSLNPLETKTFYGLIAGSTAAAQLQQQMQGSVSGYSTLSGFCKNNTLDHHTLIKGKIVVCTIEASTDNRREKCIFVR 246 (564)
Q Consensus 167 ~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gkIv~~~~~~~~~~~~~~~~~~~ 246 (564)
T Consensus 313 -------------------------------------------------------------------------------- 312 (508)
T COG1404 313 -------------------------------------------------------------------------------- 312 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCceEEEEEcCCCCCCCcceecceEEECHHhHHHHHHHHhcCCCcEEEEccCeeeecccCCCcccccccCCCCCCCCcE
Q 041372 247 ESGGVGMILIDPNAKDIGFQFVIPATLIGQEEAQELQAYMTAGKNPIARIYPPQTILKTKPAPEMAAFSSMGPNIITADI 326 (564)
Q Consensus 247 ~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~va~FSS~GP~~~kPdI 326 (564)
...+.++.||++|+. -..++
T Consensus 313 -----------------------------------------------------------~~~~~~~~~s~~g~~-~~~~~ 332 (508)
T COG1404 313 -----------------------------------------------------------DLSDTVASFSNDGSP-TGVDI 332 (508)
T ss_pred -----------------------------------------------------------CCCCccccccccCCC-CCcce
Confidence 012456788888875 23489
Q ss_pred EcCCCcccc-----cccCC-cceEEEeccccchhhHHHHHHHHHhhCC-CCCHHHHHHHHHhccc
Q 041372 327 IRSPVAIEA-----TAEQS-VDYNIISGTSMSCPHVSAVAAIIKSHHP-SWSPAAIMSAIMTTAT 384 (564)
Q Consensus 327 ~aPg~~i~s-----~~~~~-~~y~~~SGTSMAaP~VAG~aALl~q~~P-~~sp~~IksaL~~TA~ 384 (564)
.+||.++.+ ..... ..|..++||||++|||+|++||+++.+| .+++.+++..+.+++.
T Consensus 333 ~apg~~i~~~~~~~~~~~~~~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~ 397 (508)
T COG1404 333 AAPGVNILSLSAVNTLPGDGADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAG 397 (508)
T ss_pred eCCCccccccccceeeeCCccceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhccc
Confidence 999999876 33332 2499999999999999999999999999 8999999999888886
No 42
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.69 E-value=1.2e-16 Score=167.60 Aligned_cols=102 Identities=24% Similarity=0.248 Sum_probs=80.1
Q ss_pred ceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHHHc---CCcEEEEccCCCCCC-CCCccchhhHHHHHHHhCCcEEEE
Q 041372 50 TARGGAPSARLAIYKACWFNLCYDADILSALDDAIND---VVDILSLSFGPSPPQ-PIYFEDSTSIGTFHAFQKGILVSA 125 (564)
Q Consensus 50 ~~~GvAP~A~l~~ykv~~~~~~~~~di~~Ai~~Ai~d---gvdVIn~SlG~~~~~-~~~~~~~~~~~~~~a~~~Gv~vV~ 125 (564)
.+.||||+|+|++|++++.. ..+++.++++++.+ +++|||+|||..... +....+.+..++.+|.++||.||+
T Consensus 82 ~~~gvAP~a~i~~~~~~~~~---~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gitvva 158 (361)
T cd04056 82 YAGAIAPGANITLYFAPGTV---TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITVLA 158 (361)
T ss_pred HHHhccCCCeEEEEEECCcC---ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEEEE
Confidence 46899999999999997532 45678889999988 999999999976431 111235677788889999999999
Q ss_pred ccCCCCCCC------------CccccCCceEEeeeeccCCc
Q 041372 126 SAGNSIFPG------------TATNVAPGILTVAASSVDRK 154 (564)
Q Consensus 126 AAGN~g~~~------------~~~~~ap~vitVga~~~~~~ 154 (564)
|+||+|... ..+..+|||++||+++....
T Consensus 159 AsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~~ 199 (361)
T cd04056 159 ASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYTG 199 (361)
T ss_pred eCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccCC
Confidence 999998322 24678999999999876543
No 43
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.22 E-value=1.4e-10 Score=103.15 Aligned_cols=120 Identities=31% Similarity=0.511 Sum_probs=93.5
Q ss_pred EEecCCeEEeceecCCCCCCceeEEEEcchhhHHhhhhhcCcccccccccCCCCCCCCCcCCCcCceEEEEEecCCCc-h
Q 041372 159 IYLGNSKILKGSSLNPLETKTFYGLIAGSTAAAQLQQQMQGSVSGYSTLSGFCKNNTLDHHTLIKGKIVVCTIEASTD-N 237 (564)
Q Consensus 159 ~~lg~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gkIv~~~~~~~~~-~ 237 (564)
++|||++.+.|+++++... ..+++++.... ........|....++. .+++||||+|.++ .+ .
T Consensus 2 i~LGng~~i~G~sl~~~~~-~~~~~~~~~~~-------------~~~~~~~~C~~~~~~~-~~v~GkIVlc~~~--~~~~ 64 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL-KTYPLVYKSAN-------------SGDVDASLCLPGSLDP-SKVKGKIVLCDRG--GNTS 64 (126)
T ss_pred EEeCCCCEEEEEEccCCCC-CccceEeccCc-------------CCCCccccCCCCCCCh-hhccccEEEEeCC--CCcc
Confidence 6899999999999996544 45666653321 1123357899888877 7899999999864 56 7
Q ss_pred hHHHHHHHHhcCceEEEEEcCCCCCCCc---ceecceEEECHHhHHHHHHHHhcCCCcEEE
Q 041372 238 RREKCIFVRESGGVGMILIDPNAKDIGF---QFVIPATLIGQEEAQELQAYMTAGKNPIAR 295 (564)
Q Consensus 238 ~~~~~~~~~~~Ga~g~i~~~~~~~~~~~---~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 295 (564)
+.+|..+++++||.|+|++++....... ...+|.+.|+.+++..|++|++++..++++
T Consensus 65 ~~~k~~~~~~~GA~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 65 RVAKGDAVKAAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred HHHHHHHHHHcCCcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 8899999999999999999876543222 367999999999999999999988776654
No 44
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.12 E-value=5e-10 Score=101.89 Aligned_cols=94 Identities=26% Similarity=0.329 Sum_probs=76.5
Q ss_pred CCcCceEEEEEecCCCchhHHHHHHHHhcCceEEEEEcCCCCCCCc----ceecceEEECHHhHHHHHHHHhcCCCcEEE
Q 041372 220 TLIKGKIVVCTIEASTDNRREKCIFVRESGGVGMILIDPNAKDIGF----QFVIPATLIGQEEAQELQAYMTAGKNPIAR 295 (564)
Q Consensus 220 ~~~~gkIv~~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~----~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 295 (564)
.+++||||||.+ +.|.+.+|..+++.+||.|+|++++....... ...+|++.|+.++|+.|++|+++ .++
T Consensus 44 ~dv~GkIvL~~r--g~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~iP~v~Is~~dG~~L~~~l~~----~~~ 117 (143)
T cd02133 44 KDVKGKIALIQR--GEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPVVFISKEDGEALKAALES----SKK 117 (143)
T ss_pred CCccceEEEEEC--CCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeEeEEEecHHHHHHHHHHHhC----CCe
Confidence 679999999986 46889999999999999999999877543221 24689999999999999999987 455
Q ss_pred EccCeeeecccCCCcccccccCCCC
Q 041372 296 IYPPQTILKTKPAPEMAAFSSMGPN 320 (564)
Q Consensus 296 i~~~~~~~~~~~~~~va~FSS~GP~ 320 (564)
+....+.. ..++|.++.||||||.
T Consensus 118 i~~~~~~~-~~~~p~va~fSsrgp~ 141 (143)
T cd02133 118 LTFNTKKE-KATNPDLADFSSRGPW 141 (143)
T ss_pred EEEEeccc-cccCCccccccCcCCC
Confidence 55444444 5678899999999995
No 45
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.4e-09 Score=108.34 Aligned_cols=115 Identities=20% Similarity=0.233 Sum_probs=73.1
Q ss_pred CCCCcCCCCCCCCCC--C--CCCChhhHHHhhcccccCCcccccccCcceeeecCCCeEEEEEEecCCCCCHHHHHHHHH
Q 041372 6 GSLESINSISFRSAR--D--SDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWFNLCYDADILSALD 81 (564)
Q Consensus 6 ~~~~~~~~~~~~sp~--D--~~GHGTHvAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ykv~~~~~~~~~di~~Ai~ 81 (564)
-+++|+..+.|+-|| | .+.|||.|||-+++...++ ++| .|||.+.+++-.|+++. -+..|++.|--
T Consensus 187 asydfssndpfpyprytddwfnshgtrcagev~aardng--icg------vgvaydskvagirmldq--pymtdlieans 256 (629)
T KOG3526|consen 187 ASYDFSSNDPFPYPRYTDDWFNSHGTRCAGEVVAARDNG--ICG------VGVAYDSKVAGIRMLDQ--PYMTDLIEANS 256 (629)
T ss_pred eecccccCCCCCCCcccchhhhccCccccceeeeeccCC--cee------eeeeeccccceeeecCC--chhhhhhhhcc
Confidence 356665445566665 3 4789999999988877554 455 49999999999999753 45666665532
Q ss_pred HHH-HcCCcEEEEccCCCCCCCCCccchhh---HHHHHHHh-----CCcEEEEccCCCC
Q 041372 82 DAI-NDVVDILSLSFGPSPPQPIYFEDSTS---IGTFHAFQ-----KGILVSASAGNSI 131 (564)
Q Consensus 82 ~Ai-~dgvdVIn~SlG~~~~~~~~~~~~~~---~~~~~a~~-----~Gv~vV~AAGN~g 131 (564)
..- -..++|-+-|||....+. ..+.+-. .++-+-+. .|-++|.|.|..|
T Consensus 257 mghep~kihiysaswgptddgk-tvdgprnatmraiv~gvnegrnglgsiyvwasgdgg 314 (629)
T KOG3526|consen 257 MGHEPSKIHIYSASWGPTDDGK-TVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGG 314 (629)
T ss_pred cCCCCceEEEEecccCcCCCCc-ccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCC
Confidence 221 135689999999765432 1222222 22222222 4567888888776
No 46
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.47 E-value=1.1e-06 Score=77.10 Aligned_cols=84 Identities=24% Similarity=0.297 Sum_probs=68.0
Q ss_pred ccCCCCCCCCCcCCCcCceEEEEEecCCCchhHHHHHHHHhcCceEEEEEcCCCCCCC-------cceecceEEECHHhH
Q 041372 207 LSGFCKNNTLDHHTLIKGKIVVCTIEASTDNRREKCIFVRESGGVGMILIDPNAKDIG-------FQFVIPATLIGQEEA 279 (564)
Q Consensus 207 ~~~~c~~~~~~~~~~~~gkIv~~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~-------~~~~~p~~~i~~~~g 279 (564)
....|.+..++ .+++||||||.+ +.|.+.+|..+++++||.|+|++++...... ....+|+++|+.+++
T Consensus 26 ~~~~C~~~~~~--~~v~GkIvL~~r--g~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g 101 (118)
T cd04818 26 NTDGCTAFTNA--AAFAGKIALIDR--GTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADG 101 (118)
T ss_pred cccccCCCCcC--CCCCCEEEEEEC--CCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHH
Confidence 35679888775 459999999975 5688999999999999999999987654211 234799999999999
Q ss_pred HHHHHHHhcCCCcEE
Q 041372 280 QELQAYMTAGKNPIA 294 (564)
Q Consensus 280 ~~l~~~~~~~~~~~~ 294 (564)
+.|+.|++.+...+.
T Consensus 102 ~~l~~~l~~g~~v~v 116 (118)
T cd04818 102 DALKAALAAGGTVTV 116 (118)
T ss_pred HHHHHHHhcCCcEEE
Confidence 999999998765443
No 47
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.46 E-value=1e-06 Score=77.86 Aligned_cols=83 Identities=18% Similarity=0.263 Sum_probs=68.1
Q ss_pred cCCCCCCCCCcCCCcCceEEEEEecCCCchhHHHHHHHHhcCceEEEEEcCCCCCC--------CcceecceEEECHHhH
Q 041372 208 SGFCKNNTLDHHTLIKGKIVVCTIEASTDNRREKCIFVRESGGVGMILIDPNAKDI--------GFQFVIPATLIGQEEA 279 (564)
Q Consensus 208 ~~~c~~~~~~~~~~~~gkIv~~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~--------~~~~~~p~~~i~~~~g 279 (564)
...|++..++. .+++||||||.| +.|.+.+|..+++++||.++|++++..... .....+|.++|+..+|
T Consensus 29 ~~gC~~~~~~~-~~~~GkIvLv~r--g~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G 105 (122)
T cd04816 29 PAGCDASDYDG-LDVKGAIVLVDR--GGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAG 105 (122)
T ss_pred ccCCCccccCC-CCcCCeEEEEEC--CCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHH
Confidence 46798877765 689999999996 578899999999999999999998765311 1234689999999999
Q ss_pred HHHHHHHhcCCCcE
Q 041372 280 QELQAYMTAGKNPI 293 (564)
Q Consensus 280 ~~l~~~~~~~~~~~ 293 (564)
+.|++++..+.+.+
T Consensus 106 ~~l~~~l~~g~~v~ 119 (122)
T cd04816 106 AALRRRLGAGETLE 119 (122)
T ss_pred HHHHHHHcCCCEEE
Confidence 99999998876543
No 48
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.42 E-value=4e-07 Score=77.33 Aligned_cols=75 Identities=25% Similarity=0.413 Sum_probs=58.3
Q ss_pred CCCCCCCCCcCCCcCceEEEEEecCCCchhHHHHHHHHhcCceEEEEEcCCCC-------CCCcceecceEEECHHhHHH
Q 041372 209 GFCKNNTLDHHTLIKGKIVVCTIEASTDNRREKCIFVRESGGVGMILIDPNAK-------DIGFQFVIPATLIGQEEAQE 281 (564)
Q Consensus 209 ~~c~~~~~~~~~~~~gkIv~~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~-------~~~~~~~~p~~~i~~~~g~~ 281 (564)
..|.+..... .+++||||||.+ +.|.+.+|..+++++||.|+|+++.... .......+|+++|+..+|+.
T Consensus 20 ~~~~~~~~~~-~~~~gkIvlv~r--g~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~ 96 (101)
T PF02225_consen 20 GDCCPSDYNG-SDVKGKIVLVER--GSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEA 96 (101)
T ss_dssp CHHHHHHTST-STCTTSEEEEES--TSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHH
T ss_pred ccccccccCC-ccccceEEEEec--CCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhh
Confidence 3455555555 789999999964 7899999999999999999999992111 12235689999999999999
Q ss_pred HHHHH
Q 041372 282 LQAYM 286 (564)
Q Consensus 282 l~~~~ 286 (564)
|++|+
T Consensus 97 L~~~i 101 (101)
T PF02225_consen 97 LLAYI 101 (101)
T ss_dssp HHHHH
T ss_pred hhccC
Confidence 99986
No 49
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.26 E-value=7.3e-06 Score=73.77 Aligned_cols=86 Identities=13% Similarity=0.032 Sum_probs=69.7
Q ss_pred ccCCCCCCCC--CcCCCcCceEEEEEecCCCchhHHHHHHHHhcCceEEEEEcCCC-CC--C--C--cceecceEEECHH
Q 041372 207 LSGFCKNNTL--DHHTLIKGKIVVCTIEASTDNRREKCIFVRESGGVGMILIDPNA-KD--I--G--FQFVIPATLIGQE 277 (564)
Q Consensus 207 ~~~~c~~~~~--~~~~~~~gkIv~~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~-~~--~--~--~~~~~p~~~i~~~ 277 (564)
....|.+... ++ .++.|+|+|+.| +.|.+.+|..+++.+||.++|++++.. .. . . ....+|.++|+..
T Consensus 43 ~~~gC~~~~~~~~~-~~~~g~IaLV~R--G~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~ 119 (138)
T cd02122 43 DHYGCDPDTRFPIP-PNGEPWIALIQR--GNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNP 119 (138)
T ss_pred CcCCCCCCccccCC-ccCCCeEEEEEC--CCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHH
Confidence 3568988765 44 678999999996 679999999999999999999999876 21 1 1 1236899999999
Q ss_pred hHHHHHHHHhcCCCcEEE
Q 041372 278 EAQELQAYMTAGKNPIAR 295 (564)
Q Consensus 278 ~g~~l~~~~~~~~~~~~~ 295 (564)
+|+.|+.++..+.+.+.+
T Consensus 120 ~G~~l~~~l~~G~~Vtv~ 137 (138)
T cd02122 120 KGMEILELLERGISVTMV 137 (138)
T ss_pred HHHHHHHHHHcCCcEEEe
Confidence 999999999888765544
No 50
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=98.24 E-value=6.1e-06 Score=72.93 Aligned_cols=83 Identities=22% Similarity=0.218 Sum_probs=66.3
Q ss_pred cCCCCCCC--CCcCCCcCceEEEEEecCCCchhHHHHHHHHhcCceEEEEEcCCCCC--C-------CcceecceEEECH
Q 041372 208 SGFCKNNT--LDHHTLIKGKIVVCTIEASTDNRREKCIFVRESGGVGMILIDPNAKD--I-------GFQFVIPATLIGQ 276 (564)
Q Consensus 208 ~~~c~~~~--~~~~~~~~gkIv~~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~--~-------~~~~~~p~~~i~~ 276 (564)
...|.+.. ++. .+++||||||.+ +.|.+.+|..+++++||.|+|++++.... . .....+|.+.|+.
T Consensus 30 ~~~C~~~~~~~~~-~~~~GkIvl~~~--g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~ 106 (126)
T cd00538 30 LVGCGYGTTDDSG-ADVKGKIVLVRR--GGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISY 106 (126)
T ss_pred eEEEecCcccccC-CCccceEEEEEC--CCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCH
Confidence 45687766 555 789999999976 46889999999999999999999876521 1 1235799999999
Q ss_pred HhHHHHHHHHhcCCCcE
Q 041372 277 EEAQELQAYMTAGKNPI 293 (564)
Q Consensus 277 ~~g~~l~~~~~~~~~~~ 293 (564)
++++.|+.|+.++.+.+
T Consensus 107 ~~g~~l~~~~~~~~~v~ 123 (126)
T cd00538 107 ADGEALLSLLEAGKTVT 123 (126)
T ss_pred HHHHHHHHHHhcCCceE
Confidence 99999999998865543
No 51
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.21 E-value=1.2e-05 Score=70.46 Aligned_cols=85 Identities=19% Similarity=0.201 Sum_probs=68.7
Q ss_pred cCCCCCCCCCcCCCcCceEEEEEecCCCchhHHHHHHHHhcCceEEEEEcCCCCC----C-------CcceecceEEECH
Q 041372 208 SGFCKNNTLDHHTLIKGKIVVCTIEASTDNRREKCIFVRESGGVGMILIDPNAKD----I-------GFQFVIPATLIGQ 276 (564)
Q Consensus 208 ~~~c~~~~~~~~~~~~gkIv~~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~----~-------~~~~~~p~~~i~~ 276 (564)
...|.+... . .+++|+|+|++| +.|.+.+|..+++++||.++|++++.... . .....+|.++|+.
T Consensus 21 ~~gC~~~~~-~-~~~~g~I~Lv~R--G~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~ 96 (118)
T cd02127 21 LEACEELRN-I-HDINGNIALIER--GGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLG 96 (118)
T ss_pred cccCCCCCC-c-cccCCeEEEEEC--CCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecH
Confidence 467987433 3 578999999986 67999999999999999999999876431 1 1235799999999
Q ss_pred HhHHHHHHHHhcCCCcEEEE
Q 041372 277 EEAQELQAYMTAGKNPIARI 296 (564)
Q Consensus 277 ~~g~~l~~~~~~~~~~~~~i 296 (564)
.+|+.|+..+..+..+++.+
T Consensus 97 ~dG~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 97 KNGYMIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHHHHHcCCceEEee
Confidence 99999999999888776554
No 52
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.20 E-value=8.5e-06 Score=71.08 Aligned_cols=79 Identities=19% Similarity=0.272 Sum_probs=65.8
Q ss_pred cCCCCCCCCCcCCCcCceEEEEEecCCCchhHHHHHHHHhcCceEEEEEcCCCCC-----CC--cceecceEEECHHhHH
Q 041372 208 SGFCKNNTLDHHTLIKGKIVVCTIEASTDNRREKCIFVRESGGVGMILIDPNAKD-----IG--FQFVIPATLIGQEEAQ 280 (564)
Q Consensus 208 ~~~c~~~~~~~~~~~~gkIv~~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~-----~~--~~~~~p~~~i~~~~g~ 280 (564)
...|.+..+.+ .+++|||+|.+| +.|.+.+|..+++.+||.++|++|+.... .+ ....+|.++|+.++|+
T Consensus 30 ~~gC~~~~~~~-~~l~gkIaLV~R--G~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG~ 106 (120)
T cd02129 30 SVLCSASDVPP-GGLKGKAVVVMR--GNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSYKDML 106 (120)
T ss_pred cCCCCccccCc-cccCCeEEEEEC--CCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeHHHHH
Confidence 56799887765 679999999986 68999999999999999999999987531 11 2457899999999999
Q ss_pred HHHHHHhcC
Q 041372 281 ELQAYMTAG 289 (564)
Q Consensus 281 ~l~~~~~~~ 289 (564)
.|.+.+..+
T Consensus 107 ~i~~~l~~~ 115 (120)
T cd02129 107 DIQQTFGDS 115 (120)
T ss_pred HHHHHhccC
Confidence 999888643
No 53
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.15 E-value=2.5e-05 Score=67.91 Aligned_cols=87 Identities=21% Similarity=0.326 Sum_probs=59.7
Q ss_pred EeecCCCcEEEEEEEEEccCCCeEEEEEEeC--------CCC----------c-EEEEEeCEEEEeeCCcEEEEEEEEEe
Q 041372 471 GVSNMNGSLSIHRTVTYYGEGPTVYVGHVNN--------PTG----------V-NVSVSSAELKFTKTGEKMSFRVDFMP 531 (564)
Q Consensus 471 ~~~~~~~~~~~~rtvtnvg~~~~ty~~~v~~--------p~g----------~-~v~v~p~~l~~~~~g~~~~~~vt~~~ 531 (564)
++.+.....+++.+++|.|+.+.+|+++... ..| . .+...|..|++ ++|++++++|+|+.
T Consensus 2 ~L~d~~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~~ 80 (112)
T PF06280_consen 2 SLKDTGNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTITP 80 (112)
T ss_dssp EEEEE-SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE-
T ss_pred CccccCCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEEe
Confidence 4455555678889999999999999987761 112 1 57788899999 79999999999998
Q ss_pred ccc---CCCceEEEEEEEEC-Cce-EEEceEE
Q 041372 532 FKK---IGGSFVFGDLTWSN-GIH-RVRSPIG 558 (564)
Q Consensus 532 ~~~---~~~~~~~G~l~w~~-~~h-~vr~Pi~ 558 (564)
+.. .++.+++|+|.+++ +.+ .+++|+.
T Consensus 81 p~~~~~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 81 PSGLDASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp -GGGHHTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred hhcCCcccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 542 35789999999996 455 8999985
No 54
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=98.12 E-value=1.6e-05 Score=70.56 Aligned_cols=82 Identities=26% Similarity=0.279 Sum_probs=65.5
Q ss_pred cCCCCCCCCCcCCCcCceEEEEEecCCCchhHHHHHHHHhcCceEEEEEcCCCCC-------C--------CcceecceE
Q 041372 208 SGFCKNNTLDHHTLIKGKIVVCTIEASTDNRREKCIFVRESGGVGMILIDPNAKD-------I--------GFQFVIPAT 272 (564)
Q Consensus 208 ~~~c~~~~~~~~~~~~gkIv~~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~-------~--------~~~~~~p~~ 272 (564)
...|.+... + ..++|||+|++| +.|.+.+|..+++++||.++|++++.... . .....+|++
T Consensus 27 ~~gC~~~~~-~-~~~~gkIaLv~R--G~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v 102 (126)
T cd02126 27 YRACSEITN-A-EEVKGKIAIMER--GDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVV 102 (126)
T ss_pred hhcccCCCC-c-cccCceEEEEEC--CCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEE
Confidence 467987543 3 568999999997 67999999999999999999999765431 0 113578999
Q ss_pred EECHHhHHHHHHHHhcCCCcE
Q 041372 273 LIGQEEAQELQAYMTAGKNPI 293 (564)
Q Consensus 273 ~i~~~~g~~l~~~~~~~~~~~ 293 (564)
+|+..+|+.|+.+++.+...+
T Consensus 103 ~I~~~dG~~L~~~l~~~~~~~ 123 (126)
T cd02126 103 FLFSKEGSKLLAAIKEHQNVE 123 (126)
T ss_pred EEEHHHHHHHHHHHHhCCceE
Confidence 999999999999998765544
No 55
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=98.12 E-value=1.9e-05 Score=69.71 Aligned_cols=83 Identities=18% Similarity=0.231 Sum_probs=65.9
Q ss_pred CCCCCCCCCcCCCcCceEEEEEecCCCchhHHHHHHHHhcCceEEEEEcCCC-CCC----C--cceecceEEECHHhHHH
Q 041372 209 GFCKNNTLDHHTLIKGKIVVCTIEASTDNRREKCIFVRESGGVGMILIDPNA-KDI----G--FQFVIPATLIGQEEAQE 281 (564)
Q Consensus 209 ~~c~~~~~~~~~~~~gkIv~~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~-~~~----~--~~~~~p~~~i~~~~g~~ 281 (564)
..|.+..+. .+++|||||+++ +.|.+.+|..+++++||.++|++++.. ... . ....+|.+.|+.++|+.
T Consensus 32 ~gC~~~~~~--~~~~gkIvlv~r--g~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~ 107 (122)
T cd02130 32 LGCDAADYP--ASVAGNIALIER--GECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKA 107 (122)
T ss_pred CCCCcccCC--cCCCCEEEEEEC--CCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHH
Confidence 468765442 469999999996 578899999999999999999998773 211 1 23569999999999999
Q ss_pred HHHHHhcCCCcEEE
Q 041372 282 LQAYMTAGKNPIAR 295 (564)
Q Consensus 282 l~~~~~~~~~~~~~ 295 (564)
|+..++++...+++
T Consensus 108 L~~~l~~g~~v~~~ 121 (122)
T cd02130 108 LVAALANGGEVSAN 121 (122)
T ss_pred HHHHHhcCCcEEEe
Confidence 99999988765543
No 56
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.10 E-value=1.8e-05 Score=71.45 Aligned_cols=80 Identities=19% Similarity=0.317 Sum_probs=65.3
Q ss_pred cCCCCCCCCCcCCCcCceEEEEEecCCCchhHHHHHHHHhcCceEEEEEcCCCCCCC---------cceecceEEECHHh
Q 041372 208 SGFCKNNTLDHHTLIKGKIVVCTIEASTDNRREKCIFVRESGGVGMILIDPNAKDIG---------FQFVIPATLIGQEE 278 (564)
Q Consensus 208 ~~~c~~~~~~~~~~~~gkIv~~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~---------~~~~~p~~~i~~~~ 278 (564)
...|.+.. .+++|||+|++| +.|.+.+|..+++++||.++|++++...... ....+|.++|+..+
T Consensus 48 ~~gC~~~~----~~~~g~IvLV~R--G~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~ 121 (139)
T cd02132 48 LDCCSPST----SKLSGSIALVER--GECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSA 121 (139)
T ss_pred ccccCCCC----cccCCeEEEEEC--CCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHH
Confidence 46798753 468999999996 6799999999999999999999987653211 13578999999999
Q ss_pred HHHHHHHHhcCCCcE
Q 041372 279 AQELQAYMTAGKNPI 293 (564)
Q Consensus 279 g~~l~~~~~~~~~~~ 293 (564)
|+.|+..+..+...+
T Consensus 122 G~~L~~~l~~g~~Vt 136 (139)
T cd02132 122 GDALNKSLDQGKKVE 136 (139)
T ss_pred HHHHHHHHHcCCcEE
Confidence 999999998876544
No 57
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=98.06 E-value=3e-05 Score=68.81 Aligned_cols=85 Identities=14% Similarity=0.143 Sum_probs=66.0
Q ss_pred cCCCCCCCCCcC-C----CcCceEEEEEecCCCchhHHHHHHHHhcCceEEEEEcCCCCCC--------------Cccee
Q 041372 208 SGFCKNNTLDHH-T----LIKGKIVVCTIEASTDNRREKCIFVRESGGVGMILIDPNAKDI--------------GFQFV 268 (564)
Q Consensus 208 ~~~c~~~~~~~~-~----~~~gkIv~~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~--------------~~~~~ 268 (564)
...|.+...... . ...++|+|++| +.|.+.+|..+++++||.++|++++.+... .....
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~R--G~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~ 99 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDR--GGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKIT 99 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEEC--CCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCce
Confidence 457887544210 1 37789999996 679999999999999999999999865421 11346
Q ss_pred cceEEECHHhHHHHHHHHhcCCCcEE
Q 041372 269 IPATLIGQEEAQELQAYMTAGKNPIA 294 (564)
Q Consensus 269 ~p~~~i~~~~g~~l~~~~~~~~~~~~ 294 (564)
+|+++|+..+|+.|+..+..+...+.
T Consensus 100 IP~v~Is~~~G~~L~~~l~~g~~V~v 125 (127)
T cd02125 100 IPSALITKAFGEKLKKAISNGEMVVI 125 (127)
T ss_pred EeEEEECHHHHHHHHHHHhcCCeEEE
Confidence 89999999999999999988766543
No 58
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=97.96 E-value=4.8e-05 Score=66.49 Aligned_cols=77 Identities=17% Similarity=0.253 Sum_probs=62.3
Q ss_pred ccCCCCCCCCCcCCCcCceEEEEEecCCCchhHHHHHHHHhcCceEEEEEcCCCCC---------CCcceecceEEECHH
Q 041372 207 LSGFCKNNTLDHHTLIKGKIVVCTIEASTDNRREKCIFVRESGGVGMILIDPNAKD---------IGFQFVIPATLIGQE 277 (564)
Q Consensus 207 ~~~~c~~~~~~~~~~~~gkIv~~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~---------~~~~~~~p~~~i~~~ 277 (564)
....|.+. +. .+++|||+|+.| +.|.+.+|..+++++||.++|++++.... ......+|+++++.+
T Consensus 26 p~~gC~~~--~~-~~l~gkIvLV~R--G~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~ 100 (117)
T cd04813 26 PTDACSLQ--EH-AEIDGKVALVLR--GGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRT 100 (117)
T ss_pred CCCCCCCC--Cc-CCcCCeEEEEEC--CCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHH
Confidence 35689766 43 679999999986 68999999999999999999999876532 112347999999999
Q ss_pred hHHHHHHHHhc
Q 041372 278 EAQELQAYMTA 288 (564)
Q Consensus 278 ~g~~l~~~~~~ 288 (564)
+++.|+.++..
T Consensus 101 ~g~~L~~l~~~ 111 (117)
T cd04813 101 SYHLLSSLLPK 111 (117)
T ss_pred HHHHHHHhccc
Confidence 99999887653
No 59
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.95 E-value=6.2e-05 Score=66.97 Aligned_cols=84 Identities=17% Similarity=0.136 Sum_probs=64.2
Q ss_pred ccCCCCCCCCCcCCCcCceEEEEEecCCCchhHHHHHHHHhcCceEEEEEcCCCCCC----CcceecceEEECHHhHHHH
Q 041372 207 LSGFCKNNTLDHHTLIKGKIVVCTIEASTDNRREKCIFVRESGGVGMILIDPNAKDI----GFQFVIPATLIGQEEAQEL 282 (564)
Q Consensus 207 ~~~~c~~~~~~~~~~~~gkIv~~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~----~~~~~~p~~~i~~~~g~~l 282 (564)
....|.+...+. .+++|||+|++| +.|.+.+|..+++++||.++|++++..... .....+|.+.+ ..+|+.|
T Consensus 40 ~~~gC~~~~~~~-~~~~g~IaLv~r--g~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l 115 (129)
T cd02124 40 ADDACQPLPDDT-PDLSGYIVLVRR--GTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAW 115 (129)
T ss_pred CcccCcCCCccc-ccccCeEEEEEC--CCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHH
Confidence 356898765554 578999999996 569999999999999999999998765422 12233565666 9999999
Q ss_pred HHHHhcCCCcEE
Q 041372 283 QAYMTAGKNPIA 294 (564)
Q Consensus 283 ~~~~~~~~~~~~ 294 (564)
++.++.+...++
T Consensus 116 ~~~l~~G~~vtv 127 (129)
T cd02124 116 IDALAAGSNVTV 127 (129)
T ss_pred HHHHhcCCeEEE
Confidence 999987765443
No 60
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.88 E-value=6.8e-05 Score=67.32 Aligned_cols=68 Identities=18% Similarity=0.200 Sum_probs=56.6
Q ss_pred CCcCceEEEEEecCCCch-----hHHHHHHHHhcCceEEEEEcCC--CCCC----Cc---ceecceEEECHHhHHHHHHH
Q 041372 220 TLIKGKIVVCTIEASTDN-----RREKCIFVRESGGVGMILIDPN--AKDI----GF---QFVIPATLIGQEEAQELQAY 285 (564)
Q Consensus 220 ~~~~gkIv~~~~~~~~~~-----~~~~~~~~~~~Ga~g~i~~~~~--~~~~----~~---~~~~p~~~i~~~~g~~l~~~ 285 (564)
.+++|||+|++| +.|. +.+|..+++++||.++|++|+. .... .. ...+|++.|+..+|+.|+..
T Consensus 53 ~d~~GkIaLI~R--G~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~~ 130 (139)
T cd04817 53 GGMAGKICLIER--GGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALLAA 130 (139)
T ss_pred CCcCccEEEEEC--CCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHHHH
Confidence 578999999997 5688 9999999999999999999987 3211 11 35899999999999999988
Q ss_pred HhcC
Q 041372 286 MTAG 289 (564)
Q Consensus 286 ~~~~ 289 (564)
+...
T Consensus 131 l~~~ 134 (139)
T cd04817 131 LGQS 134 (139)
T ss_pred hcCC
Confidence 8543
No 61
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=97.80 E-value=0.00013 Score=67.09 Aligned_cols=81 Identities=16% Similarity=0.187 Sum_probs=65.7
Q ss_pred cCCCCCCCC---CcCCCcCceEEEEEecCCCchhHHHHHHHHhcCceEEEEEcCCCCCCC---------cceecceEEEC
Q 041372 208 SGFCKNNTL---DHHTLIKGKIVVCTIEASTDNRREKCIFVRESGGVGMILIDPNAKDIG---------FQFVIPATLIG 275 (564)
Q Consensus 208 ~~~c~~~~~---~~~~~~~gkIv~~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~---------~~~~~p~~~i~ 275 (564)
...|.+... +. ..+.|+|+|+.| +.|.+.+|..+++++||.++|++++...... ....+|+++|+
T Consensus 50 ~~gC~~~~~~~~~~-~~~~g~IvLV~R--G~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is 126 (153)
T cd02123 50 LNACSPIENPPLNS-NASGSFIVLIRR--GNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVG 126 (153)
T ss_pred cccCCCCccccccc-ccCCCeEEEEEC--CCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEee
Confidence 457887543 22 578999999996 6799999999999999999999997654211 14589999999
Q ss_pred HHhHHHHHHHHhcCCC
Q 041372 276 QEEAQELQAYMTAGKN 291 (564)
Q Consensus 276 ~~~g~~l~~~~~~~~~ 291 (564)
..+|+.|+.++.....
T Consensus 127 ~~dg~~L~~~l~~~~~ 142 (153)
T cd02123 127 KSTGEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHHHHhcCCc
Confidence 9999999999987654
No 62
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=97.27 E-value=0.0018 Score=57.52 Aligned_cols=71 Identities=18% Similarity=0.251 Sum_probs=56.5
Q ss_pred CCcCceEEEEEecCCCchhHHHHHHHHhcCceEEEEEcCCCCCCC----------cceecceEEECHHhHHHHHHHHhcC
Q 041372 220 TLIKGKIVVCTIEASTDNRREKCIFVRESGGVGMILIDPNAKDIG----------FQFVIPATLIGQEEAQELQAYMTAG 289 (564)
Q Consensus 220 ~~~~gkIv~~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~----------~~~~~p~~~i~~~~g~~l~~~~~~~ 289 (564)
.+++||||++.++.....+.+|..++.++||.|+|++++...... ....+|.+.|+.++++.|...++.+
T Consensus 41 ~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~Is~edg~~L~~~l~~g 120 (127)
T cd04819 41 LDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASVSGEDGLRLARVAERN 120 (127)
T ss_pred CCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEEeHHHHHHHHHHHhcC
Confidence 569999999987432127789999999999999999986654221 1246999999999999999999875
Q ss_pred C
Q 041372 290 K 290 (564)
Q Consensus 290 ~ 290 (564)
.
T Consensus 121 ~ 121 (127)
T cd04819 121 D 121 (127)
T ss_pred C
Confidence 4
No 63
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0082 Score=69.85 Aligned_cols=94 Identities=20% Similarity=0.220 Sum_probs=54.7
Q ss_pred eeecCCCeEEEEEEecCCCCCHHHHHHHHHHHHHcCC-cEEEEccCCCCC-CCCC--ccchhhHHHHHHHhCCcEEEEcc
Q 041372 52 RGGAPSARLAIYKACWFNLCYDADILSALDDAINDVV-DILSLSFGPSPP-QPIY--FEDSTSIGTFHAFQKGILVSASA 127 (564)
Q Consensus 52 ~GvAP~A~l~~ykv~~~~~~~~~di~~Ai~~Ai~dgv-dVIn~SlG~~~~-~~~~--~~~~~~~~~~~a~~~Gv~vV~AA 127 (564)
.-+||+|+|..|-+ ... .......|++.-...=+ -+|-+||+.... .+.+ .-+.++...+.|.++||.+++|+
T Consensus 289 ~A~AP~A~I~lvva--p~~-~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~AAS 365 (1174)
T COG4934 289 HAMAPKANIDLVVA--PNP-LVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIFAAS 365 (1174)
T ss_pred hccCccCceEEEEc--CCC-ceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEEEec
Confidence 56899999999866 111 11112222222111111 344456664211 1112 23445556677889999999999
Q ss_pred CCCCCCC---------CccccCCceEEeee
Q 041372 128 GNSIFPG---------TATNVAPGILTVAA 148 (564)
Q Consensus 128 GN~g~~~---------~~~~~ap~vitVga 148 (564)
|.+|..+ ..+..+|||++||-
T Consensus 366 GD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 366 GDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred ccccccCCCcccceeecccCCCccEEeecC
Confidence 9997322 24568999999996
No 64
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=96.14 E-value=0.019 Score=51.42 Aligned_cols=72 Identities=22% Similarity=0.275 Sum_probs=54.8
Q ss_pred CCcCceEEEEEecCCCc------hhHHH-------HHHHHhcCceEEEEEcCCCC--------CCCc---ceecceEEEC
Q 041372 220 TLIKGKIVVCTIEASTD------NRREK-------CIFVRESGGVGMILIDPNAK--------DIGF---QFVIPATLIG 275 (564)
Q Consensus 220 ~~~~gkIv~~~~~~~~~------~~~~~-------~~~~~~~Ga~g~i~~~~~~~--------~~~~---~~~~p~~~i~ 275 (564)
.+++||||+..+ +.| .+..| ...++++||.++|+++.... ...+ ...+|++.|+
T Consensus 36 ~~v~GKIvlv~~--~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is 113 (134)
T cd04815 36 GAVKGKIVFFNQ--PMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAIS 113 (134)
T ss_pred hhcCCeEEEecC--CccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEec
Confidence 679999999875 455 55555 68899999999999985321 1111 2459999999
Q ss_pred HHhHHHHHHHHhcCCCcE
Q 041372 276 QEEAQELQAYMTAGKNPI 293 (564)
Q Consensus 276 ~~~g~~l~~~~~~~~~~~ 293 (564)
.++++.|...++.+....
T Consensus 114 ~ed~~~L~r~l~~g~~v~ 131 (134)
T cd04815 114 VEDADMLERLAARGKPIR 131 (134)
T ss_pred hhcHHHHHHHHhCCCCeE
Confidence 999999999998776543
No 65
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=95.52 E-value=0.032 Score=52.44 Aligned_cols=67 Identities=25% Similarity=0.313 Sum_probs=52.4
Q ss_pred CCcCceEEEEEecCCCchhHHHHHHHHhcCceEEEEEcCCCCC----------------CC------c------------
Q 041372 220 TLIKGKIVVCTIEASTDNRREKCIFVRESGGVGMILIDPNAKD----------------IG------F------------ 265 (564)
Q Consensus 220 ~~~~gkIv~~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~----------------~~------~------------ 265 (564)
.+++|||+|+++ +.|.+.+|..+++++||+|+|++++.... .+ +
T Consensus 52 v~v~GkIvLvr~--G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~ 129 (183)
T cd02128 52 VSVNGSVVLVRA--GKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQ 129 (183)
T ss_pred CCCCCeEEEEEC--CCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCccc
Confidence 578999999997 45788999999999999999999874110 00 0
Q ss_pred ---ceecceEEECHHhHHHHHHHHhc
Q 041372 266 ---QFVIPATLIGQEEAQELQAYMTA 288 (564)
Q Consensus 266 ---~~~~p~~~i~~~~g~~l~~~~~~ 288 (564)
--.||+.-|+.++++.|++.+.-
T Consensus 130 ~~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 130 SSGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred ccCCCCCCEeccCHHHHHHHHHHcCC
Confidence 11478899999999999988754
No 66
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=95.01 E-value=0.087 Score=55.62 Aligned_cols=76 Identities=16% Similarity=0.358 Sum_probs=62.7
Q ss_pred CCcCceEEEEEecCCCchhHHHHHHHHhcCceEEEEEcCCCC---------CCCcceecceEEECHHhHHHHHHHHhcCC
Q 041372 220 TLIKGKIVVCTIEASTDNRREKCIFVRESGGVGMILIDPNAK---------DIGFQFVIPATLIGQEEAQELQAYMTAGK 290 (564)
Q Consensus 220 ~~~~gkIv~~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~---------~~~~~~~~p~~~i~~~~g~~l~~~~~~~~ 290 (564)
.+.++|+++..| +.|.+.+|...++++||.++++.|+... +...+..||..++..++++.+.....++.
T Consensus 92 ~kl~~~~~~v~R--GnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~ 169 (541)
T KOG2442|consen 92 SKLSGKVALVFR--GNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSND 169 (541)
T ss_pred ccccceeEEEec--ccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCC
Confidence 778999999886 7899999999999999999999998432 12235689999999999999998777777
Q ss_pred CcEEEEc
Q 041372 291 NPIARIY 297 (564)
Q Consensus 291 ~~~~~i~ 297 (564)
+.++.+.
T Consensus 170 ~V~~~lY 176 (541)
T KOG2442|consen 170 NVELALY 176 (541)
T ss_pred eEEEEEE
Confidence 6666554
No 67
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=94.26 E-value=0.18 Score=46.00 Aligned_cols=53 Identities=19% Similarity=0.192 Sum_probs=39.7
Q ss_pred CCCCCCCCCcCCCcCceEEEEEecC----------------CCchhHHHHHHHHhcCceEEEEEcCCCCC
Q 041372 209 GFCKNNTLDHHTLIKGKIVVCTIEA----------------STDNRREKCIFVRESGGVGMILIDPNAKD 262 (564)
Q Consensus 209 ~~c~~~~~~~~~~~~gkIv~~~~~~----------------~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~ 262 (564)
..|....+.. .+++|||||+.+.. .-|.+..|..++...||.|+|++++....
T Consensus 34 ~~~~~~Dy~g-iDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~~~~ 102 (151)
T cd04822 34 PELGYDDYAG-LDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGPNSH 102 (151)
T ss_pred cccchhhccC-CCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCCccc
Confidence 3455444444 68999999997642 11567789999999999999999987554
No 68
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=93.90 E-value=0.22 Score=39.89 Aligned_cols=56 Identities=25% Similarity=0.268 Sum_probs=36.0
Q ss_pred cEEEEEEEEEccCCC-eEEEEEEeCCCCcEEEEEeCEEEEeeCCcEEEEEEEEEecc
Q 041372 478 SLSIHRTVTYYGEGP-TVYVGHVNNPTGVNVSVSSAELKFTKTGEKMSFRVDFMPFK 533 (564)
Q Consensus 478 ~~~~~rtvtnvg~~~-~ty~~~v~~p~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~ 533 (564)
..+++-+|+|.|..+ ....+++..|.|-++...|..+.--++||+++++++|+...
T Consensus 6 ~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~ 62 (78)
T PF10633_consen 6 TVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPA 62 (78)
T ss_dssp EEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-T
T ss_pred EEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCC
Confidence 568889999999754 45888889999999888888886448999999999988763
No 69
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=93.88 E-value=2.6 Score=35.36 Aligned_cols=80 Identities=19% Similarity=0.128 Sum_probs=58.2
Q ss_pred cEEEEEEEEEccCCCeEEEEEEeCCCCcEEEEEeCEEEEeeCCcEEEEEEEEEecccCCCceEEEEEEEECCceEEEceE
Q 041372 478 SLSIHRTVTYYGEGPTVYVGHVNNPTGVNVSVSSAELKFTKTGEKMSFRVDFMPFKKIGGSFVFGDLTWSNGIHRVRSPI 557 (564)
Q Consensus 478 ~~~~~rtvtnvg~~~~ty~~~v~~p~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~~~~~~~~G~l~w~~~~h~vr~Pi 557 (564)
..+.+-+++|.|..+..|++.......-.++++|..=.+ ++|++.+++|+|.+... . ....+.|...-..+.+.+|+
T Consensus 21 ~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~~-~-g~~~~~l~i~~e~~~~~i~v 97 (102)
T PF14874_consen 21 TYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPTKP-L-GDYEGSLVITTEGGSFEIPV 97 (102)
T ss_pred EEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeCCC-C-ceEEEEEEEEECCeEEEEEE
Confidence 345667789999989999987644234557778776666 79999999999995432 2 23578888776667888887
Q ss_pred EEE
Q 041372 558 GLN 560 (564)
Q Consensus 558 ~v~ 560 (564)
-+.
T Consensus 98 ~a~ 100 (102)
T PF14874_consen 98 KAE 100 (102)
T ss_pred EEE
Confidence 654
No 70
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=93.66 E-value=0.17 Score=45.35 Aligned_cols=52 Identities=23% Similarity=0.330 Sum_probs=38.9
Q ss_pred CCCCCCCCCcCCCcCceEEEEEecCCC----------chhHHHHHHHHhcCceEEEEEcCCCC
Q 041372 209 GFCKNNTLDHHTLIKGKIVVCTIEAST----------DNRREKCIFVRESGGVGMILIDPNAK 261 (564)
Q Consensus 209 ~~c~~~~~~~~~~~~gkIv~~~~~~~~----------~~~~~~~~~~~~~Ga~g~i~~~~~~~ 261 (564)
..|....+.. .+++|||||+.++.-. ..+..|...+.++||.|+|++++...
T Consensus 36 ~~~~~~Dy~~-iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~~ 97 (137)
T cd04820 36 PELGHDDYAG-LDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPRS 97 (137)
T ss_pred cCcCHhhccC-CCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCcc
Confidence 3466555554 7899999999874311 13668999999999999999987543
No 71
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=93.21 E-value=0.2 Score=45.22 Aligned_cols=51 Identities=18% Similarity=0.152 Sum_probs=38.1
Q ss_pred CCCCCCCCCcCCCcCceEEEEEecCC--C--------------chhHHHHHHHHhcCceEEEEEcCCC
Q 041372 209 GFCKNNTLDHHTLIKGKIVVCTIEAS--T--------------DNRREKCIFVRESGGVGMILIDPNA 260 (564)
Q Consensus 209 ~~c~~~~~~~~~~~~gkIv~~~~~~~--~--------------~~~~~~~~~~~~~Ga~g~i~~~~~~ 260 (564)
..|....+.. .+++||||++.++.- . ..+..|...++++||.|+|++++..
T Consensus 34 ~~~~~dDYag-~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~~~ 100 (142)
T cd04814 34 PELSWDDYAG-LDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHELA 100 (142)
T ss_pred CCCChhhcCC-CCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeCCC
Confidence 3466555555 789999999876421 0 0366899999999999999998764
No 72
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=92.48 E-value=0.2 Score=45.40 Aligned_cols=40 Identities=15% Similarity=0.147 Sum_probs=34.4
Q ss_pred CCcCceEEEEEecCCCchhHHHHHHHHhcCceEEEEEcCCCC
Q 041372 220 TLIKGKIVVCTIEASTDNRREKCIFVRESGGVGMILIDPNAK 261 (564)
Q Consensus 220 ~~~~gkIv~~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~ 261 (564)
-+++|||+|++++ ...+..|..+++..||+|+|+|.+...
T Consensus 37 V~v~GkIvi~RyG--~~~RG~Kv~~A~~~GA~GviIYsDP~d 76 (153)
T cd02131 37 MNVTNQIALLKLG--QAPLLYKLSLLEEAGFGGVLLYVDPCD 76 (153)
T ss_pred CCccceEEEEecc--CcchHHHHHHHHHCCCeEEEEecChhh
Confidence 5699999999975 456889999999999999999988543
No 73
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=90.09 E-value=3 Score=36.19 Aligned_cols=54 Identities=15% Similarity=0.135 Sum_probs=38.2
Q ss_pred EEEEEEEEccCCCeEEEEEEeCCCCcEEEEEeCEEEEeeCCcEEEEEEEEEeccc
Q 041372 480 SIHRTVTYYGEGPTVYVGHVNNPTGVNVSVSSAELKFTKTGEKMSFRVDFMPFKK 534 (564)
Q Consensus 480 ~~~rtvtnvg~~~~ty~~~v~~p~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~ 534 (564)
.++-.++|....+.+|++++..++|+.+......+.+ ++||+.++.|.+..+..
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~~ 87 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPPD 87 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-GG
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECHH
Confidence 4778899999999999999999889999665588989 79999999998887643
No 74
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=89.06 E-value=0.61 Score=45.38 Aligned_cols=39 Identities=31% Similarity=0.324 Sum_probs=33.5
Q ss_pred CCcCceEEEEEecCCCchhHHHHHHHHhcCceEEEEEcCCC
Q 041372 220 TLIKGKIVVCTIEASTDNRREKCIFVRESGGVGMILIDPNA 260 (564)
Q Consensus 220 ~~~~gkIv~~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~ 260 (564)
.+++|||||+.++ .+.+.+|..+++.+||+|+|++++..
T Consensus 68 vdv~GKIvLvr~G--~~~~~~Kv~~A~~~GA~gVIiy~Dp~ 106 (220)
T cd02121 68 IDVKGKIVIARYG--GIFRGLKVKNAQLAGAVGVIIYSDPA 106 (220)
T ss_pred CCCCCeEEEEECC--CccHHHHHHHHHHcCCEEEEEEeCch
Confidence 5799999999864 45677899999999999999998754
No 75
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.40 E-value=4.7 Score=41.72 Aligned_cols=81 Identities=11% Similarity=0.039 Sum_probs=58.5
Q ss_pred cCCCCCCCCCc--CCCcCceEEEEEecCCCchhHHHHHHHHhcCceEEEEEcCCCCC-------CCcceecceEEECHHh
Q 041372 208 SGFCKNNTLDH--HTLIKGKIVVCTIEASTDNRREKCIFVRESGGVGMILIDPNAKD-------IGFQFVIPATLIGQEE 278 (564)
Q Consensus 208 ~~~c~~~~~~~--~~~~~gkIv~~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~-------~~~~~~~p~~~i~~~~ 278 (564)
...|.+-..-+ .......++|..| +.|++.+|..+++++|..+.|++|+...+ -.....++.++++...
T Consensus 62 ~~aC~~i~~~p~~~~~~~~~laLI~R--g~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ 139 (348)
T KOG4628|consen 62 LNACNPITNFPEHSTRSTSFLALIRR--GGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFS 139 (348)
T ss_pred ccccCccccCccCCCCCcceEEEEEc--cCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeeh
Confidence 35677644312 1334556777765 56999999999999999999999976543 1224568899999999
Q ss_pred HHHHHHHHhcCC
Q 041372 279 AQELQAYMTAGK 290 (564)
Q Consensus 279 g~~l~~~~~~~~ 290 (564)
|+.|.+|.....
T Consensus 140 ge~l~~~~~~~~ 151 (348)
T KOG4628|consen 140 GELLSSYAGRTE 151 (348)
T ss_pred HHHHHHhhcccc
Confidence 999998865443
No 76
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=82.07 E-value=0.88 Score=41.02 Aligned_cols=86 Identities=12% Similarity=0.099 Sum_probs=60.8
Q ss_pred ccCCCCCCCCCcCCCcCceEEEEEecCCCchhHHHHHHHHhcCceEEEEEcCCCCCCC-------------cceecceEE
Q 041372 207 LSGFCKNNTLDHHTLIKGKIVVCTIEASTDNRREKCIFVRESGGVGMILIDPNAKDIG-------------FQFVIPATL 273 (564)
Q Consensus 207 ~~~~c~~~~~~~~~~~~gkIv~~~~~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~-------------~~~~~p~~~ 273 (564)
....|...... -...|.+.|.+| |.|++..|..+++++||..+|+.+....... ....+|+++
T Consensus 73 Pp~aC~elrN~--~f~~d~vaL~eR--GeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~f 148 (193)
T KOG3920|consen 73 PPHACEELRNE--IFAPDSVALMER--GECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVF 148 (193)
T ss_pred ChhHHHHHhhc--ccCCCcEEEEec--CCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEE
Confidence 35667663322 457788999885 7899999999999999999999876654322 245788888
Q ss_pred ECHHhHHHHHHHHhcCCCcEEEE
Q 041372 274 IGQEEAQELQAYMTAGKNPIARI 296 (564)
Q Consensus 274 i~~~~g~~l~~~~~~~~~~~~~i 296 (564)
+-..+|..++..++.-.-+-+.|
T Consensus 149 llg~~Gy~ir~sL~r~~r~ha~i 171 (193)
T KOG3920|consen 149 LLGVTGYYIRVSLKRYFRDHAKI 171 (193)
T ss_pred EeccceEEEehhHHHhCCccEEE
Confidence 88888876666665544444444
No 77
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=81.31 E-value=18 Score=31.42 Aligned_cols=67 Identities=21% Similarity=0.140 Sum_probs=44.1
Q ss_pred EEEEEEEEEccCCCeEEEEEEeC---CCC----cEEEEEeCEEEEeeCCcEEEEEEEEEecccCCCceEEEEEEEE
Q 041372 479 LSIHRTVTYYGEGPTVYVGHVNN---PTG----VNVSVSSAELKFTKTGEKMSFRVDFMPFKKIGGSFVFGDLTWS 547 (564)
Q Consensus 479 ~~~~rtvtnvg~~~~ty~~~v~~---p~g----~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~~~~~~~~G~l~w~ 547 (564)
.+.+.+|+|.|+.+..+.+.+.. ... -.+-|.|..+.+ ++|+++++.| +.....+......=+|.++
T Consensus 16 ~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~~~~~~~~E~~yrl~~~ 89 (122)
T PF00345_consen 16 RSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRGSKLPIDRESLYRLSFR 89 (122)
T ss_dssp SEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EECSGS-SSS-EEEEEEEE
T ss_pred CEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-EecCCCCCCceEEEEEEEE
Confidence 45678899999877677776654 111 257899999999 7999999999 6644323332223344443
No 78
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=74.19 E-value=4.9 Score=37.00 Aligned_cols=41 Identities=20% Similarity=0.261 Sum_probs=30.7
Q ss_pred CCcCceEEEEEecCCC-----------------chhHHHHHHHHhcCceEEEEEcCCC
Q 041372 220 TLIKGKIVVCTIEAST-----------------DNRREKCIFVRESGGVGMILIDPNA 260 (564)
Q Consensus 220 ~~~~gkIv~~~~~~~~-----------------~~~~~~~~~~~~~Ga~g~i~~~~~~ 260 (564)
.+++||||++..+... .....|...+.+.||.|+|++.+..
T Consensus 46 ~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~~ 103 (157)
T cd04821 46 LDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHETE 103 (157)
T ss_pred CCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCCC
Confidence 6899999998753311 1123588999999999999997643
No 79
>COG1470 Predicted membrane protein [Function unknown]
Probab=73.48 E-value=12 Score=39.97 Aligned_cols=62 Identities=18% Similarity=0.276 Sum_probs=50.2
Q ss_pred cEEEEEEEEEccCCCe-EEEEEEeCCCCcEEEEEeCEEEEeeCCcEEEEEEEEEecc-cCCCce
Q 041372 478 SLSIHRTVTYYGEGPT-VYVGHVNNPTGVNVSVSSAELKFTKTGEKMSFRVDFMPFK-KIGGSF 539 (564)
Q Consensus 478 ~~~~~rtvtnvg~~~~-ty~~~v~~p~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~-~~~~~~ 539 (564)
..++.-.++|-|+.+- --+.++..|.|-++.|+|.++.--++||++++.+|++++. +..+.|
T Consensus 398 e~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY 461 (513)
T COG1470 398 EKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDY 461 (513)
T ss_pred cceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcE
Confidence 3677888999997654 4778999999999999999887778999999999998863 334444
No 80
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=66.21 E-value=20 Score=28.75 Aligned_cols=39 Identities=21% Similarity=0.436 Sum_probs=29.9
Q ss_pred EEEEEeCEEEEeeCCcEEEEEEEEEecccCCCceEEEEEEEECC
Q 041372 506 NVSVSSAELKFTKTGEKMSFRVDFMPFKKIGGSFVFGDLTWSNG 549 (564)
Q Consensus 506 ~v~v~p~~l~~~~~g~~~~~~vt~~~~~~~~~~~~~G~l~w~~~ 549 (564)
.|++.|..+++ ..|+++.|++++...... - ...++|+..
T Consensus 4 ~i~i~p~~~~l-~~G~~~~l~a~~~~~~~~---~-~~~v~w~Ss 42 (81)
T smart00635 4 SVTVTPTTASV-KKGLTLQLTATVTPSSAK---V-TGKVTWTSS 42 (81)
T ss_pred EEEEeCCeeEE-eCCCeEEEEEEEECCCCC---c-cceEEEEEC
Confidence 58899999999 589999999997643321 1 577899853
No 81
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=64.53 E-value=28 Score=37.60 Aligned_cols=52 Identities=21% Similarity=0.236 Sum_probs=44.9
Q ss_pred EEEEEEEEccCCCeEEEEEEeCCCCcEEEEEeCEEEEeeCCcEEEEEEEEEec
Q 041372 480 SIHRTVTYYGEGPTVYVGHVNNPTGVNVSVSSAELKFTKTGEKMSFRVDFMPF 532 (564)
Q Consensus 480 ~~~rtvtnvg~~~~ty~~~v~~p~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~ 532 (564)
.++-.+.|..+.+.+|+.+++.+++..+...+..+++ ++||+.++.|.+..+
T Consensus 349 ~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v-~~g~~~~~~v~v~~~ 400 (434)
T TIGR02745 349 TYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHV-KAGEKVKLPVFLRTP 400 (434)
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEE-CCCCEEEEEEEEEec
Confidence 4677899999999999999999999998876568888 799999999888775
No 82
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=64.05 E-value=77 Score=27.71 Aligned_cols=69 Identities=16% Similarity=0.196 Sum_probs=46.9
Q ss_pred CcEEEEEEEEEccCCCeEEEEEEeC----CCCc--------------------EEEEEeCEEEEeeCCcEEEEEEEEEec
Q 041372 477 GSLSIHRTVTYYGEGPTVYVGHVNN----PTGV--------------------NVSVSSAELKFTKTGEKMSFRVDFMPF 532 (564)
Q Consensus 477 ~~~~~~rtvtnvg~~~~ty~~~v~~----p~g~--------------------~v~v~p~~l~~~~~g~~~~~~vt~~~~ 532 (564)
...+++.+|+|.++.+-+|.+.+.. ..|+ -|++ |..+++ +++|+++++++++.+
T Consensus 27 q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl-~~~~sk~V~~~i~~P 104 (121)
T PF06030_consen 27 QKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTL-PPNESKTVTFTIKMP 104 (121)
T ss_pred CEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEE-CCCCEEEEEEEEEcC
Confidence 4577888999999888888887632 1121 0333 455888 799999999999876
Q ss_pred ccCCCceEEEEEEEE
Q 041372 533 KKIGGSFVFGDLTWS 547 (564)
Q Consensus 533 ~~~~~~~~~G~l~w~ 547 (564)
...-...+-|-|.++
T Consensus 105 ~~~f~G~ilGGi~~~ 119 (121)
T PF06030_consen 105 KKAFDGIILGGIYFS 119 (121)
T ss_pred CCCcCCEEEeeEEEE
Confidence 543344566766654
No 83
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=63.68 E-value=47 Score=27.80 Aligned_cols=52 Identities=23% Similarity=0.345 Sum_probs=39.4
Q ss_pred cEEEEEEEEEccCCCeEEEEEEeCCCCcEEEEEeCEEEEeeCCcEEEEEEEEEec
Q 041372 478 SLSIHRTVTYYGEGPTVYVGHVNNPTGVNVSVSSAELKFTKTGEKMSFRVDFMPF 532 (564)
Q Consensus 478 ~~~~~rtvtnvg~~~~ty~~~v~~p~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~ 532 (564)
......+++|.++..-.|.+....|.. ..|.|..=.+ ++|++++++|++...
T Consensus 19 ~~~~~l~l~N~s~~~i~fKiktt~~~~--y~v~P~~G~i-~p~~~~~i~I~~~~~ 70 (109)
T PF00635_consen 19 QQSCELTLTNPSDKPIAFKIKTTNPNR--YRVKPSYGII-EPGESVEITITFQPF 70 (109)
T ss_dssp -EEEEEEEEE-SSSEEEEEEEES-TTT--EEEESSEEEE--TTEEEEEEEEE-SS
T ss_pred eEEEEEEEECCCCCcEEEEEEcCCCce--EEecCCCEEE-CCCCEEEEEEEEEec
Confidence 456667899999988889888888875 5677998888 799999999999874
No 84
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=56.04 E-value=64 Score=26.10 Aligned_cols=54 Identities=20% Similarity=0.269 Sum_probs=25.3
Q ss_pred EEEEEEEEEccCCCe--------EEEEEEeCCCCcEE---------EEEeCEEEEeeCCcEEEEEEEEEecc
Q 041372 479 LSIHRTVTYYGEGPT--------VYVGHVNNPTGVNV---------SVSSAELKFTKTGEKMSFRVDFMPFK 533 (564)
Q Consensus 479 ~~~~rtvtnvg~~~~--------ty~~~v~~p~g~~v---------~v~p~~l~~~~~g~~~~~~vt~~~~~ 533 (564)
+.++.+|+|.++.+. .|...+..+.|-.| +---...++ ++||+++|+.++....
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l-~pGe~~~~~~~~~~~~ 72 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETL-EPGESLTYEETWDLKD 72 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE--TT-EEEEEEEESS--
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEE-CCCCEEEEEEEECCCC
Confidence 456677777776432 24444444444333 222334556 6899999998886543
No 85
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=54.89 E-value=6.6 Score=42.31 Aligned_cols=73 Identities=19% Similarity=0.153 Sum_probs=50.5
Q ss_pred EEeccccchhhHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCcccccCCCCCCCCCCCCCCCCCccccccC
Q 041372 345 IISGTSMSCPHVSAVAAIIKSHHPSWSPAAIMSAIMTTATVLNNNQQQIRRDPNGSQTTPFDNGSGHINQVAAM 418 (564)
Q Consensus 345 ~~SGTSMAaP~VAG~aALl~q~~P~~sp~~IksaL~~TA~~~~~~~~~i~~~~~~~~~~~~~~GaG~Vn~~~A~ 418 (564)
--.|||.++|..||+.+|.++++|.++-.++..++..++............+..+.. -.-.+|.|++|..+-+
T Consensus 251 ~h~g~s~~~~~~a~~~~~~~~~~~~ls~~d~~~l~~~~~~~~~~~~~~~~~n~~g~~-~~h~~g~~~~~~~~~~ 323 (431)
T KOG3525|consen 251 GHTGTSASAPLAAGIIALALEANPCLSWRDSQHLIVLTSRPKVLLKGKWKSNGAGGL-VSHLYGFGLLDAKALV 323 (431)
T ss_pred cCCCCcCccchhcchhhhhhccCccccccchhhhhhhhcchhhccCCCceEecCCce-eeeeecccccCcchhh
Confidence 356999999999999999999999999998888888887654322221111111111 1225788888876644
No 86
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=53.51 E-value=14 Score=25.70 Aligned_cols=25 Identities=8% Similarity=0.174 Sum_probs=19.5
Q ss_pred HHHHHhhCCCCCHHHHHHHHHhccc
Q 041372 360 AAIIKSHHPSWSPAAIMSAIMTTAT 384 (564)
Q Consensus 360 aALl~q~~P~~sp~~IksaL~~TA~ 384 (564)
+--|++.+|+|++..|+..|...-.
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~~ 29 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANNG 29 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcCC
Confidence 3457899999999999999976543
No 87
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=50.99 E-value=57 Score=22.95 Aligned_cols=44 Identities=20% Similarity=0.359 Sum_probs=25.8
Q ss_pred EEEEEccCCCeEEEEEEeCCCCcEEEEEeCEEEEeeCCcEEEEEEEE
Q 041372 483 RTVTYYGEGPTVYVGHVNNPTGVNVSVSSAELKFTKTGEKMSFRVDF 529 (564)
Q Consensus 483 rtvtnvg~~~~ty~~~v~~p~g~~v~v~p~~l~~~~~g~~~~~~vt~ 529 (564)
.+++|.|+.+-. .-.++..-|-.+ ++.+.=.+ ++||+..++|++
T Consensus 2 F~~~N~g~~~L~-I~~v~tsCgCt~-~~~~~~~i-~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLV-ITDVQTSCGCTT-AEYSKKPI-APGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEE-EEEeeEccCCEE-eeCCcceE-CCCCEEEEEEEC
Confidence 468899875532 234444455332 22333334 799999988864
No 88
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=50.50 E-value=99 Score=26.45 Aligned_cols=72 Identities=14% Similarity=0.014 Sum_probs=45.2
Q ss_pred eeec-CCCeEEEEEEecCCCCCHHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCccchhhHHHHHHHhC-CcEEEE
Q 041372 52 RGGA-PSARLAIYKACWFNLCYDADILSALDDAINDVVDILSLSFGPSPPQPIYFEDSTSIGTFHAFQK-GILVSA 125 (564)
Q Consensus 52 ~GvA-P~A~l~~ykv~~~~~~~~~di~~Ai~~Ai~dgvdVIn~SlG~~~~~~~~~~~~~~~~~~~a~~~-Gv~vV~ 125 (564)
.... ++++|+.+-- +.||....++.-+++.++.|+|+|-+|--.....+...=.-++.......++ |+-||.
T Consensus 31 ~~y~~~~~elvgf~~--CgGCpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~~~~~~~~I~~~~gi~VV~ 104 (107)
T PF08821_consen 31 ARYDDEDVELVGFFT--CGGCPGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPHIDEIKKIIEEKFGIEVVE 104 (107)
T ss_pred ccCCCCCeEEEEEee--CCCCChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCCHHHHHHHHHHHhCCCEee
Confidence 3334 5688888654 5678999999999999999999998887643322100000122223344445 887774
No 89
>COG1470 Predicted membrane protein [Function unknown]
Probab=50.04 E-value=2.2e+02 Score=30.88 Aligned_cols=55 Identities=18% Similarity=0.323 Sum_probs=43.9
Q ss_pred cEEEEEEEEEccCCCeEEEEEEe-CCCCcEEEEEe-----CEEEEeeCCcEEEEEEEEEecc
Q 041372 478 SLSIHRTVTYYGEGPTVYVGHVN-NPTGVNVSVSS-----AELKFTKTGEKMSFRVDFMPFK 533 (564)
Q Consensus 478 ~~~~~rtvtnvg~~~~ty~~~v~-~p~g~~v~v~p-----~~l~~~~~g~~~~~~vt~~~~~ 533 (564)
+..++.++.|.|.....|..++. .|.|-+....- +++.+ ++||+++|+|.+....
T Consensus 285 t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL-~~gE~kdvtleV~ps~ 345 (513)
T COG1470 285 TASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKL-KPGEEKDVTLEVYPSL 345 (513)
T ss_pred ceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEe-cCCCceEEEEEEecCC
Confidence 45788889999999999999998 88886654332 35556 6999999999998764
No 90
>PLN03080 Probable beta-xylosidase; Provisional
Probab=49.91 E-value=60 Score=37.95 Aligned_cols=77 Identities=19% Similarity=0.223 Sum_probs=42.4
Q ss_pred cEEEEEEEEEccCCC--eEEEEEEeCCCCcEEEEEeC------EEEEeeCCcEEEEEEEEEe-cc----cCCCceE--EE
Q 041372 478 SLSIHRTVTYYGEGP--TVYVGHVNNPTGVNVSVSSA------ELKFTKTGEKMSFRVDFMP-FK----KIGGSFV--FG 542 (564)
Q Consensus 478 ~~~~~rtvtnvg~~~--~ty~~~v~~p~g~~v~v~p~------~l~~~~~g~~~~~~vt~~~-~~----~~~~~~~--~G 542 (564)
..+++.+|||+|+-. ++-..=+..|... +..-++ ++.+ ++||++++++++.. .+ ...+.|+ -|
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~~-~~~P~k~L~gF~kv~L-~~Ges~~V~~~l~~~~~ls~~d~~~~~~v~~G 762 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPVV-PGVPEKQLVGFDRVHT-ASGRSTETEIVVDPCKHLSVANEEGKRVLPLG 762 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCccC-CCCcchhccCcEeEee-CCCCEEEEEEEeCchHHceEEcCCCcEEEeCc
Confidence 477999999999744 3333333444321 111112 3334 68999998888865 21 1123443 45
Q ss_pred EEEEE--CCceEEEce
Q 041372 543 DLTWS--NGIHRVRSP 556 (564)
Q Consensus 543 ~l~w~--~~~h~vr~P 556 (564)
..++. +..|.|+.+
T Consensus 763 ~y~l~vG~~~~~~~~~ 778 (779)
T PLN03080 763 DHVLMLGDLEHSLSIE 778 (779)
T ss_pred cEEEEEeCCccceEEe
Confidence 55443 356766654
No 91
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=46.45 E-value=8.8 Score=16.92 Aligned_cols=6 Identities=67% Similarity=1.005 Sum_probs=4.5
Q ss_pred ccccCC
Q 041372 313 AFSSMG 318 (564)
Q Consensus 313 ~FSS~G 318 (564)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 578887
No 92
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=41.92 E-value=26 Score=36.43 Aligned_cols=71 Identities=17% Similarity=0.138 Sum_probs=47.8
Q ss_pred eeecCCCeEEEEEEecCCCCCHHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCccchhhHHHHHHHhCCcEEEEccCCCC
Q 041372 52 RGGAPSARLAIYKACWFNLCYDADILSALDDAINDVVDILSLSFGPSPPQPIYFEDSTSIGTFHAFQKGILVSASAGNSI 131 (564)
Q Consensus 52 ~GvAP~A~l~~ykv~~~~~~~~~di~~Ai~~Ai~dgvdVIn~SlG~~~~~~~~~~~~~~~~~~~a~~~Gv~vV~AAGN~g 131 (564)
.=||-.++|+.=-|- .-.-..+.+++| |++.|++-|.+| +.|.|.+.....--+.|.++||.||-|.|=+.
T Consensus 78 ~emak~~~vivN~vG-PyR~hGE~VVka---cienG~~~vDIS-----GEP~f~E~mq~kYhd~A~ekGVYIVsaCGfDS 148 (423)
T KOG2733|consen 78 DEMAKQARVIVNCVG-PYRFHGEPVVKA---CIENGTHHVDIS-----GEPQFMERMQLKYHDLAKEKGVYIVSACGFDS 148 (423)
T ss_pred HHHHhhhEEEEeccc-cceecCcHHHHH---HHHcCCceeccC-----CCHHHHHHHHHHHHHHHHhcCeEEEeecccCC
Confidence 456777787762220 001224556555 899999999887 34446665555566789999999999999875
No 93
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=41.73 E-value=98 Score=27.83 Aligned_cols=49 Identities=4% Similarity=0.131 Sum_probs=37.2
Q ss_pred EEEeCCCCcEEEEEeCEEEEeeCCcEEEEEEEEEecccCCCceEEEEEEEE
Q 041372 497 GHVNNPTGVNVSVSSAELKFTKTGEKMSFRVDFMPFKKIGGSFVFGDLTWS 547 (564)
Q Consensus 497 ~~v~~p~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~~~~~~~~G~l~w~ 547 (564)
+....-..+++-=.|..+++ .+++.++++.+++.... .....||.|+|.
T Consensus 90 vElat~gdLklve~p~~~tL-~P~~~~~i~~~iKVsSt-etGvIfG~I~Yd 138 (140)
T PF07718_consen 90 VELATLGDLKLVERPQPITL-APHGFARIKATIKVSST-ETGVIFGNIVYD 138 (140)
T ss_pred EEEEecCCcEEccCCCceee-CCCcEEEEEEEEEEEec-cCCEEEEEEEEe
Confidence 33444566888888999999 68998888888877654 346899999985
No 94
>PF13195 DUF4011: Protein of unknown function (DUF4011)
Probab=36.25 E-value=38 Score=31.66 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=21.6
Q ss_pred EEEEEEEEC---CceEEEceEEEEEeeC
Q 041372 540 VFGDLTWSN---GIHRVRSPIGLNVLSL 564 (564)
Q Consensus 540 ~~G~l~w~~---~~h~vr~Pi~v~~~~~ 564 (564)
.+|+|.|.+ .....+.|++..++.|
T Consensus 121 a~G~L~W~~~~~~~~~~~APLlL~PV~L 148 (176)
T PF13195_consen 121 AFGFLEWYESDDSDKPRRAPLLLIPVEL 148 (176)
T ss_pred eeeEEEeccCCCCCCEEECCEEEEeEEE
Confidence 699999986 6789999999988764
No 95
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=35.09 E-value=2.7e+02 Score=26.23 Aligned_cols=70 Identities=21% Similarity=0.333 Sum_probs=42.1
Q ss_pred CCcEEEEEEEEEccCCCeEEEEEEeC----CCCcEEEEE--eCEEEEeeCCcEEEEEEEEEecccCCCceEEE--EEEEE
Q 041372 476 NGSLSIHRTVTYYGEGPTVYVGHVNN----PTGVNVSVS--SAELKFTKTGEKMSFRVDFMPFKKIGGSFVFG--DLTWS 547 (564)
Q Consensus 476 ~~~~~~~rtvtnvg~~~~ty~~~v~~----p~g~~v~v~--p~~l~~~~~g~~~~~~vt~~~~~~~~~~~~~G--~l~w~ 547 (564)
....+++.+|-|+|+. .-|.+++.. |..+++.-- ..++.-=++|+..+.++++++.. .+.+.++ .++.+
T Consensus 37 g~~v~V~~~iyN~G~~-~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~~--~G~f~~~~a~VtY~ 113 (181)
T PF05753_consen 37 GEDVTVTYTIYNVGSS-AAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRPKK--SGYFNFTPAVVTYR 113 (181)
T ss_pred CcEEEEEEEEEECCCC-eEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEeeee--eEEEEccCEEEEEE
Confidence 3468899999999984 578888765 234443111 11122226899888888887653 3444433 34454
Q ss_pred C
Q 041372 548 N 548 (564)
Q Consensus 548 ~ 548 (564)
+
T Consensus 114 ~ 114 (181)
T PF05753_consen 114 D 114 (181)
T ss_pred C
Confidence 3
No 96
>PF09244 DUF1964: Domain of unknown function (DUF1964); InterPro: IPR015325 This domain is C-terminal to the catalytic sucrose phosphorylase beta/alpha barrel domain. It adopts a beta-sandwich fold, with Greek-key topology and is functionally uncharacterised []. ; PDB: 1R7A_B 2GDU_A 2GDV_A.
Probab=34.23 E-value=63 Score=24.50 Aligned_cols=40 Identities=30% Similarity=0.547 Sum_probs=23.0
Q ss_pred EEEEeeCCcEEEEEEEEEecccC--CCceEEEEEEEEC--CceE
Q 041372 513 ELKFTKTGEKMSFRVDFMPFKKI--GGSFVFGDLTWSN--GIHR 552 (564)
Q Consensus 513 ~l~~~~~g~~~~~~vt~~~~~~~--~~~~~~G~l~w~~--~~h~ 552 (564)
+++|+..|+.-+-++||.+.... .+...--.|.|+| |.|+
T Consensus 15 Sitf~W~g~~t~atLtFePg~Glg~~n~~pVatl~W~DsaG~H~ 58 (68)
T PF09244_consen 15 SITFTWTGATTSATLTFEPGRGLGVDNTTPVATLAWTDSAGDHR 58 (68)
T ss_dssp EEEEEEE-SS-EEEEEE-GGGC-STT--S--EEEEEEETTEEEE
T ss_pred EEEEEEeccccEEEEEEccCcccCccCCcceeEEEEeccCCCcc
Confidence 67777778877778888876432 2233568899998 4564
No 97
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=34.20 E-value=34 Score=25.39 Aligned_cols=36 Identities=22% Similarity=0.323 Sum_probs=21.0
Q ss_pred EEeccccchhhHHHHH------HHHHhhCCCCCHHHHHHHHH
Q 041372 345 IISGTSMSCPHVSAVA------AIIKSHHPSWSPAAIMSAIM 380 (564)
Q Consensus 345 ~~SGTSMAaP~VAG~a------ALl~q~~P~~sp~~IksaL~ 380 (564)
.+.||=+..=.+.... .-|.+.||++++++|+++|.
T Consensus 13 ~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 13 VIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred eEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 4556655544444332 23466799999999999984
No 98
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=32.48 E-value=65 Score=22.27 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=21.3
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHhcc
Q 041372 359 VAAIIKSHHPSWSPAAIMSAIMTTA 383 (564)
Q Consensus 359 ~aALl~q~~P~~sp~~IksaL~~TA 383 (564)
.+..|++.+|+++...|+..|...-
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~~ 29 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEANN 29 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcC
Confidence 4567899999999999999998644
No 99
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=31.52 E-value=1.5e+02 Score=34.78 Aligned_cols=70 Identities=23% Similarity=0.322 Sum_probs=43.8
Q ss_pred CCCCCCCcceeEeecC---------CCcEEEEEEEEEccCC--CeEEEEEEeCCCCcEEEEEeC-------EEEEeeCCc
Q 041372 460 PPSYNFNYPSIGVSNM---------NGSLSIHRTVTYYGEG--PTVYVGHVNNPTGVNVSVSSA-------ELKFTKTGE 521 (564)
Q Consensus 460 ~~~~~lN~psi~~~~~---------~~~~~~~rtvtnvg~~--~~ty~~~v~~p~g~~v~v~p~-------~l~~~~~g~ 521 (564)
+..+-|.|-.|...++ .+..+++.+|+|+|+- .++-.+=+..|.+- + ..|. +..+ ++||
T Consensus 641 pFG~GLSYT~F~ys~l~v~~~~~~~~~~i~v~v~V~NtG~~~G~EVvQlYv~~~~~~-~-~~P~k~L~gF~Kv~L-~pGe 717 (765)
T PRK15098 641 PFGYGLSYTTFTVSDVKLSSPTMKRDGKVTASVTVTNTGKREGATVVQLYLQDVTAS-M-SRPVKELKGFEKIML-KPGE 717 (765)
T ss_pred cccCCCCCccEEeeccEeccccccCCCeEEEEEEEEECCCCCccEEEEEeccCCCCC-C-CCHHHhccCceeEeE-CCCC
Confidence 3456678888776554 2347899999999974 34433334445331 1 1231 2345 7999
Q ss_pred EEEEEEEEEec
Q 041372 522 KMSFRVDFMPF 532 (564)
Q Consensus 522 ~~~~~vt~~~~ 532 (564)
++++++++...
T Consensus 718 s~~V~~~l~~~ 728 (765)
T PRK15098 718 TQTVSFPIDIE 728 (765)
T ss_pred eEEEEEeecHH
Confidence 99999998754
No 100
>cd08523 Reeler_cohesin_like Domains similar to the eukaryotic reeler domain and bacterial cohesins. This diverse family summarizes a set of distantly related domains, as revealed by structural similarity.
Probab=30.04 E-value=3.9e+02 Score=23.56 Aligned_cols=21 Identities=5% Similarity=0.170 Sum_probs=15.9
Q ss_pred EEEEeeCCcEEEEEEEEEecc
Q 041372 513 ELKFTKTGEKMSFRVDFMPFK 533 (564)
Q Consensus 513 ~l~~~~~g~~~~~~vt~~~~~ 533 (564)
+++.+.+||.+.|.|.+.+..
T Consensus 74 sVTWtapgqf~~f~vs~~~~P 94 (124)
T cd08523 74 SVTWKAPSQEVRAKVSLRAEP 94 (124)
T ss_pred EEEEcCCCceEEEEEEeecCC
Confidence 366667889999999887653
No 101
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=29.32 E-value=3e+02 Score=22.05 Aligned_cols=53 Identities=19% Similarity=0.250 Sum_probs=31.5
Q ss_pred CCcEEEEEEEEEccCCC-eEEEEEEeCCCCcEEEEEeCEE-EEeeCCcEEEEEEEEEec
Q 041372 476 NGSLSIHRTVTYYGEGP-TVYVGHVNNPTGVNVSVSSAEL-KFTKTGEKMSFRVDFMPF 532 (564)
Q Consensus 476 ~~~~~~~rtvtnvg~~~-~ty~~~v~~p~g~~v~v~p~~l-~~~~~g~~~~~~vt~~~~ 532 (564)
....+++-+|+|.|... ..+.+.+-. .|..+ .-..+ .+ ++|+++++++++...
T Consensus 18 g~~~~i~~~V~N~G~~~~~~~~v~~~~-~~~~~--~~~~i~~L-~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTADAENVTVRLYL-DGNSV--STVTIPSL-APGESETVTFTWTPP 72 (101)
T ss_dssp TSEEEEEEEEEE-SSS-BEEEEEEEEE-TTEEE--EEEEESEB--TTEEEEEEEEEE-S
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEE-CCcee--ccEEECCc-CCCcEEEEEEEEEeC
Confidence 34678889999999764 446665543 23333 22222 45 688988888888765
No 102
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=28.52 E-value=3.6e+02 Score=22.73 Aligned_cols=70 Identities=19% Similarity=0.266 Sum_probs=30.6
Q ss_pred EEEEEEEEEccCCCeEEE---EEEeCCCCcEEEEEe---------CEEEEeeCCcEEEEEEEEEecccCC-CceEE-EEE
Q 041372 479 LSIHRTVTYYGEGPTVYV---GHVNNPTGVNVSVSS---------AELKFTKTGEKMSFRVDFMPFKKIG-GSFVF-GDL 544 (564)
Q Consensus 479 ~~~~rtvtnvg~~~~ty~---~~v~~p~g~~v~v~p---------~~l~~~~~g~~~~~~vt~~~~~~~~-~~~~~-G~l 544 (564)
+.+..+|+|.|+.+..+. +.+....|-...... ..-++ ++|++.+..+.|..+.... -...+ ..+
T Consensus 38 v~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i-~pG~~~~g~l~F~vp~~~~~~~l~~~~~~ 116 (123)
T PF11611_consen 38 VVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETI-KPGESVTGKLVFEVPKDDKPYTLEYSPDI 116 (123)
T ss_dssp EEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE--TT-EEEEEEEEEESTT-GG-EEEE-H--
T ss_pred EEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEE-CCCCEEEEEEEEEECCCCccEEEEEecCc
Confidence 678899999987654332 344444443333222 22345 6888888888887764432 33334 555
Q ss_pred EEECC
Q 041372 545 TWSNG 549 (564)
Q Consensus 545 ~w~~~ 549 (564)
.|.++
T Consensus 117 ~~~~~ 121 (123)
T PF11611_consen 117 SWSDK 121 (123)
T ss_dssp -----
T ss_pred ccccc
Confidence 56543
No 103
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=28.49 E-value=1.8e+02 Score=31.42 Aligned_cols=75 Identities=17% Similarity=0.194 Sum_probs=53.0
Q ss_pred ecCCCeEEEEEEecCCCCCHHHHHHHHHHHHHcC-CcEEEEccCCCCCC-CC-CccchhhHHHHHHHhCCcEEEEccCCC
Q 041372 54 GAPSARLAIYKACWFNLCYDADILSALDDAINDV-VDILSLSFGPSPPQ-PI-YFEDSTSIGTFHAFQKGILVSASAGNS 130 (564)
Q Consensus 54 vAP~A~l~~ykv~~~~~~~~~di~~Ai~~Ai~dg-vdVIn~SlG~~~~~-~~-~~~~~~~~~~~~a~~~Gv~vV~AAGN~ 130 (564)
=.|.++++.|-+.-.+......|++||+.|-+.+ +|||=+-=||.+-. -+ |.+..+ +....+.-+.||.|-|-+
T Consensus 159 R~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~v---aRAi~~s~iPvISAVGHE 235 (440)
T COG1570 159 RFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIV---ARAIAASRIPVISAVGHE 235 (440)
T ss_pred hCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcchHHHHhccChHHH---HHHHHhCCCCeEeecccC
Confidence 3688999999886555566778999999998887 99998888875421 11 222233 333445678899999987
Q ss_pred C
Q 041372 131 I 131 (564)
Q Consensus 131 g 131 (564)
-
T Consensus 236 t 236 (440)
T COG1570 236 T 236 (440)
T ss_pred C
Confidence 5
No 104
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=28.18 E-value=33 Score=22.60 Aligned_cols=13 Identities=15% Similarity=0.519 Sum_probs=10.5
Q ss_pred cchhhHHHHHHHH
Q 041372 351 MSCPHVSAVAAII 363 (564)
Q Consensus 351 MAaP~VAG~aALl 363 (564)
.|+|.+||+++=+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 4899999997744
No 105
>PF02368 Big_2: Bacterial Ig-like domain (group 2); InterPro: IPR003343 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins as well as in some uncharacterised eukaryote proteins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 3NCX_B 3NCW_D 4AQ1_A 2ZQK_B 2ZWK_C 1F02_I 1E5U_I 1F00_I 2L04_A.
Probab=25.43 E-value=37 Score=26.88 Aligned_cols=37 Identities=16% Similarity=0.476 Sum_probs=28.8
Q ss_pred EEEEEeCEEEEeeCCcEEEEEEEEEecccCCCceEEEEEEEEC
Q 041372 506 NVSVSSAELKFTKTGEKMSFRVDFMPFKKIGGSFVFGDLTWSN 548 (564)
Q Consensus 506 ~v~v~p~~l~~~~~g~~~~~~vt~~~~~~~~~~~~~G~l~w~~ 548 (564)
+|++.|..+.+ ..|+++.|++++....... ..++|+.
T Consensus 4 ~I~i~~~~~~l-~~G~~~~l~~~~~~~~~~~-----~~v~w~s 40 (79)
T PF02368_consen 4 SITITPTSVTL-KVGQTQQLTATVTPSDGSN-----SKVTWSS 40 (79)
T ss_dssp SEEETTTEEEC-ETTCEETTEEEEEEEESTT-----SCEEEEE
T ss_pred EEEEECCEEEE-ECCCEEEEEEEEEECCCcE-----eEEEEEe
Confidence 47889999999 6899999999887765433 5578873
No 106
>PRK15019 CsdA-binding activator; Provisional
Probab=24.98 E-value=71 Score=29.05 Aligned_cols=31 Identities=16% Similarity=0.161 Sum_probs=26.6
Q ss_pred EeccccchhhHHHHHHHHHhhCCCCCHHHHHH
Q 041372 346 ISGTSMSCPHVSAVAAIIKSHHPSWSPAAIMS 377 (564)
Q Consensus 346 ~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks 377 (564)
+.|.| =|+.|-|.+|||.+.+-..+|++|.+
T Consensus 79 f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 79 FFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 33555 48999999999999999999999976
No 107
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=24.19 E-value=75 Score=28.53 Aligned_cols=31 Identities=16% Similarity=0.262 Sum_probs=26.8
Q ss_pred EeccccchhhHHHHHHHHHhhCCCCCHHHHHH
Q 041372 346 ISGTSMSCPHVSAVAAIIKSHHPSWSPAAIMS 377 (564)
Q Consensus 346 ~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks 377 (564)
+.|.| =|+.|-|++|||.+.+-..+|++|.+
T Consensus 74 f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~ 104 (138)
T TIGR03391 74 FYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLA 104 (138)
T ss_pred EEecC-ccHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 44555 48999999999999999999999974
No 108
>PRK13203 ureB urease subunit beta; Reviewed
Probab=20.77 E-value=2.7e+02 Score=23.55 Aligned_cols=44 Identities=25% Similarity=0.465 Sum_probs=27.5
Q ss_pred CcEEEEEEEEEccCCC----eEEEEE-----------------EeCCCCcEEEEEeCEEEEeeCCcEEEEEEE
Q 041372 477 GSLSIHRTVTYYGEGP----TVYVGH-----------------VNNPTGVNVSVSSAELKFTKTGEKMSFRVD 528 (564)
Q Consensus 477 ~~~~~~rtvtnvg~~~----~ty~~~-----------------v~~p~g~~v~v~p~~l~~~~~g~~~~~~vt 528 (564)
+..+++.+|+|.|+.+ +-|+.- +.-|+|.. +.| ++|+++++++.
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTa-------vRF-EPG~~k~V~LV 82 (102)
T PRK13203 18 GRETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTA-------VRF-EPGQTREVELV 82 (102)
T ss_pred CCCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCe-------EeE-CCCCeEEEEEE
Confidence 4456778899999854 234321 22355544 456 78999987764
No 109
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=20.47 E-value=98 Score=27.79 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=26.7
Q ss_pred EeccccchhhHHHHHHHHHhhCCCCCHHHHHH
Q 041372 346 ISGTSMSCPHVSAVAAIIKSHHPSWSPAAIMS 377 (564)
Q Consensus 346 ~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks 377 (564)
+.|.| =++.|-|.+|||.+.+-..+|++|..
T Consensus 69 f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 69 LQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 34555 58999999999999999999999875
No 110
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=20.01 E-value=3.2e+02 Score=23.09 Aligned_cols=44 Identities=23% Similarity=0.452 Sum_probs=27.4
Q ss_pred CcEEEEEEEEEccCCC----eEEEEE-----------------EeCCCCcEEEEEeCEEEEeeCCcEEEEEEE
Q 041372 477 GSLSIHRTVTYYGEGP----TVYVGH-----------------VNNPTGVNVSVSSAELKFTKTGEKMSFRVD 528 (564)
Q Consensus 477 ~~~~~~rtvtnvg~~~----~ty~~~-----------------v~~p~g~~v~v~p~~l~~~~~g~~~~~~vt 528 (564)
+..+++.+|+|.|+.+ +-|+.- ++-|+|.. +.| ++|+++++++.
T Consensus 18 gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTa-------vRF-EPG~~k~V~LV 82 (101)
T cd00407 18 GREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTA-------VRF-EPGEEKEVELV 82 (101)
T ss_pred CCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCe-------EEE-CCCCeEEEEEE
Confidence 4456777899999754 234431 22345544 456 78999987764
Done!