BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041373
(395 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1V73|A Chain A, Crystal Structure Of Cold-Active Protein-Tyrosine
Phosphatase Of A Psychrophile Shewanella Sp
Length = 342
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 77/344 (22%), Positives = 134/344 (38%), Gaps = 89/344 (25%)
Query: 39 PDPKTSQNVRE--PTTRLPRVDRLIAIGDLHGDLEKSKQALRLAGLINGSDQWTGGTATV 96
P+ K S +++ P T L + +++A+ D+HG + L+ +I+ W G +
Sbjct: 51 PETKLSSEIKQIMPDTYLG-IKKVVALSDVHGQYDVLLTLLKKQKIIDSDGNWAFGEGHM 109
Query: 97 VQIGDVLDRGDDXXXXXXXXXXXXREAEKSGGKFITMNGNHEIMNIEADFRYATEMGLKE 156
V GD+ DRG ++A +GG + GNHE M + D RY +
Sbjct: 110 VMTGDIFDRGHQVNEVLWFMYQLDQQARDAGGMVHLLMGNHEQMVLGGDLRYVHQR---- 165
Query: 157 FEDWANWYCIGNKMKSLCVGLEKPKDLFSGIPLAFKSMAKEYHNGVRARIAALRPDGPIA 216
Y I + + +P + G D I
Sbjct: 166 -------YDIATTL------INRPYNKLYG------------------------ADTEIG 188
Query: 217 RRFLSENTTVLVVGDSVFVHGGLLKQHV--EYGLERINREVR-------------DWING 261
+ S+N T++ + D +++HGG+ + + E L++ N R D +N
Sbjct: 189 QWLRSKN-TIIKINDVLYMHGGISSEWISRELTLDKANALYRANVDASKKSLKADDLLNF 247
Query: 262 LMGKSAPGYCKGRHAVVWLRKFSDEEKKCDCSALEHALATIPGVKRMIMGHTIQEKGINA 321
L + P + +G + F++ E + L+H V +++GHT QE+ +
Sbjct: 248 LFFGNGPTWYRGYFS----ETFTEAELD---TILQHF-----NVNHIVVGHTSQER-VLG 294
Query: 322 VCDNRAIRID----VGLS------------RGCYDGLPEVLEIN 349
+ N+ I +D VG S RG YDG E L+ N
Sbjct: 295 LFHNKVIAVDSSIKVGKSGELLLLENNRLIRGLYDGTRETLQEN 338
>pdb|2Z72|A Chain A, New Structure Of Cold-Active Protein Tyrosine Phosphatase
At 1.1 Angstrom
Length = 342
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/345 (22%), Positives = 136/345 (39%), Gaps = 91/345 (26%)
Query: 39 PDPKTSQNVRE--PTTRLPRVDRLIAIGDLHGDLEKSKQALRLAGLINGSDQWTGGTATV 96
P+ K S +++ P T L + +++A+ D+HG + L+ +I+ W G +
Sbjct: 51 PETKLSSEIKQIMPDTYLG-IKKVVALSDVHGQYDVLLTLLKKQKIIDSDGNWAFGEGHM 109
Query: 97 VQIGDVLDRGDDXXXXXXXXXXXXREAEKSGGKFITMNGNHEIMNIEADFRYATEMGLKE 156
V GD+ DRG ++A +GG + GNHE M + D RY +
Sbjct: 110 VMTGDIFDRGHQVNEVLWFMYQLDQQARDAGGMVHLLMGNHEQMVLGGDLRYVHQR---- 165
Query: 157 FEDWANWYCIGNKMKSLCVGLEKPKD-LFSGIPLAFKSMAKEYHNGVRARIAALRPDGPI 215
Y I + + +P + L+S D I
Sbjct: 166 -------YDIATTL------INRPYNKLYSA-------------------------DTEI 187
Query: 216 ARRFLSENTTVLVVGDSVFVHGGLLKQHV--EYGLERINREVR-------------DWIN 260
+ S+N T++ + D +++HGG+ + + E L++ N R D +N
Sbjct: 188 GQWLRSKN-TIIKINDVLYMHGGISSEWISRELTLDKANALYRANVDASKKSLKADDLLN 246
Query: 261 GLMGKSAPGYCKGRHAVVWLRKFSDEEKKCDCSALEHALATIPGVKRMIMGHTIQEKGIN 320
L + P + +G + F++ E + L+H V +++GHT QE+ +
Sbjct: 247 FLFFGNGPTWYRGYFS----ETFTEAELD---TILQHF-----NVNHIVVGHTSQER-VL 293
Query: 321 AVCDNRAIRID----VGLS------------RGCYDGLPEVLEIN 349
+ N+ I +D VG S RG YDG E L+ N
Sbjct: 294 GLFHNKVIAVDSSIKVGKSGELLLLENNRLIRGLYDGTRETLQEN 338
>pdb|2ZBM|A Chain A, Crystal Structure Of I115m Mutant Cold-Active Protein
Tyrosine Phosphatase
Length = 336
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/342 (22%), Positives = 133/342 (38%), Gaps = 89/342 (26%)
Query: 39 PDPKTSQNVRE--PTTRLPRVDRLIAIGDLHGDLEKSKQALRLAGLINGSDQWTGGTATV 96
P+ K S +++ P T L + +++A+ D+HG + L+ +I+ W G +
Sbjct: 51 PETKLSSEIKQIMPDTYLG-IKKVVALSDVHGQYDVLLTLLKKQKIIDSDGNWAFGEGHM 109
Query: 97 VQIGDVLDRGDDXXXXXXXXXXXXREAEKSGGKFITMNGNHEIMNIEADFRYATEMGLKE 156
V GD+ DRG ++A +GG + GNHE M + D RY +
Sbjct: 110 VMTGDMFDRGHQVNEVLWFMYQLDQQARDAGGMVHLLMGNHEQMVLGGDLRYVHQR---- 165
Query: 157 FEDWANWYCIGNKMKSLCVGLEKPKDLFSGIPLAFKSMAKEYHNGVRARIAALRPDGPIA 216
Y I + + +P + G D I
Sbjct: 166 -------YDIATTL------INRPYNKLYG------------------------ADTEIG 188
Query: 217 RRFLSENTTVLVVGDSVFVHGGLLKQHV--EYGLERINREVR-------------DWING 261
+ S+N T++ + D +++HGG+ + + E L++ N R D +N
Sbjct: 189 QWLRSKN-TIIKINDVLYMHGGISSEWISRELTLDKANALYRANVDASKKSLKADDLLNF 247
Query: 262 LMGKSAPGYCKGRHAVVWLRKFSDEEKKCDCSALEHALATIPGVKRMIMGHTIQEKGINA 321
L + P + +G + F++ E + L+H V +++GHT QE+ +
Sbjct: 248 LFFGNGPTWYRGYFS----ETFTEAELD---TILQHF-----NVNHIVVGHTSQER-VLG 294
Query: 322 VCDNRAIRID----VGLS------------RGCYDGLPEVLE 347
+ N+ I +D VG S RG YDG E L+
Sbjct: 295 LFHNKVIAVDSSIKVGKSGELLLLENNRLIRGLYDGTRETLQ 336
>pdb|2QJC|A Chain A, Crystal Structure Of A Putative Diadenosine
Tetraphosphatase
Length = 262
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Query: 54 LPRVD-RLIAIGDLHGDLEKSKQALRLAGLINGSDQWTGGTATVVQIGDVLDRGDD 108
LP V R+I +GD+HG + + LR GSD T+V +GD++++G D
Sbjct: 14 LPNVTGRVIIVGDIHGCRAQLEDLLRAVSFKQGSD-------TLVAVGDLVNKGPD 62
>pdb|3UWL|A Chain A, Crystal Structure Of Enteroccocus Faecalis Thymidylate
Synthase (efts) In Complex With 5-formyl
Tetrahydrofolate
pdb|3UWL|C Chain C, Crystal Structure Of Enteroccocus Faecalis Thymidylate
Synthase (efts) In Complex With 5-formyl
Tetrahydrofolate
Length = 315
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 26/95 (27%)
Query: 168 NKMKSLCVGLEKPKDLFSGIPLAFKSMAKEYHNGVRARIAALRPDGPIARRFLSENTTVL 227
N+ K C ++ D+F G+P S A H L + T L
Sbjct: 206 NEGKLSCQLYQRSADVFLGVPFNIASYALLTH--------------------LIAHETGL 245
Query: 228 VVGDSVFVH----GGLLKQHVEYGLERINREVRDW 258
VG+ FVH L + HVE E+++REVR +
Sbjct: 246 EVGE--FVHTLGDAHLYQNHVEQMQEQLSREVRSF 278
>pdb|3UWL|B Chain B, Crystal Structure Of Enteroccocus Faecalis Thymidylate
Synthase (efts) In Complex With 5-formyl
Tetrahydrofolate
pdb|3UWL|D Chain D, Crystal Structure Of Enteroccocus Faecalis Thymidylate
Synthase (efts) In Complex With 5-formyl
Tetrahydrofolate
Length = 315
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 26/95 (27%)
Query: 168 NKMKSLCVGLEKPKDLFSGIPLAFKSMAKEYHNGVRARIAALRPDGPIARRFLSENTTVL 227
N+ K C ++ D+F G+P S A H L + T L
Sbjct: 206 NEGKLSCQLYQRSADVFLGVPFNIASYALLTH--------------------LIAHETGL 245
Query: 228 VVGDSVFVH----GGLLKQHVEYGLERINREVRDW 258
VG+ FVH L + HVE E+++REVR +
Sbjct: 246 EVGE--FVHTLGDAHLYQNHVEQMQEQLSREVRSF 278
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,385,653
Number of Sequences: 62578
Number of extensions: 523252
Number of successful extensions: 1205
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1191
Number of HSP's gapped (non-prelim): 12
length of query: 395
length of database: 14,973,337
effective HSP length: 101
effective length of query: 294
effective length of database: 8,652,959
effective search space: 2543969946
effective search space used: 2543969946
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)