BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041374
(513 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 122/420 (29%), Positives = 181/420 (43%), Gaps = 43/420 (10%)
Query: 74 RHRRVTKLVLRNQSIGGFLSPYVGNLSF-LRFVNLASNNLHGEIPYEHGQLPPSIGNLSA 132
+ R + L L G L + NLS L ++L+SNN G I Q P +
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN-----T 395
Query: 133 LQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLE 192
LQ + + N ++P +L L L +S N SG SS+ ++S L + N LE
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 193 GSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLP 252
G +P + + + LE L + N+ TG +P LSN +NL + LS N +G++ RL
Sbjct: 456 GEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514
Query: 253 NLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIIL- 311
NL L N+ +G I A L +C L L+TN+F G +P ++ S I
Sbjct: 515 NLAILKLSNNSF-SGNI-----PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568
Query: 312 FTMGLNQIY---GTIPPEVKNLVNLNGF-GLEYNQLTGPIPHAIGELRNLQLRGNVPSSL 367
F G +Y + E NL F G+ QL + + G+ +
Sbjct: 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628
Query: 368 GNCQNLMLLSVSNNKLTGALPPQXXXXXXXXXXXXXXXXXXXXXIPTEVGNLKNLVQLDL 427
N ++M L +S N L+G IP E+G++ L L+L
Sbjct: 629 DNNGSMMFLDMSYNMLSG-------------------------YIPKEIGSMPYLFILNL 663
Query: 428 SENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEF 487
N S IP + L L + N + G IP A++ L + E+DLS NNLSG IPE
Sbjct: 664 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 132/444 (29%), Positives = 187/444 (42%), Gaps = 89/444 (20%)
Query: 59 NSISLCQWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPY 118
NSIS G + L + I G + V L F++++SNN IP+
Sbjct: 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF 218
Query: 119 EHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNI 178
+G+ SALQ++DI+GN+L ++ L L+IS N F G
Sbjct: 219 --------LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP-------- 262
Query: 179 SSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASN-LQLLDLSL 237
I PL L +L+ LS+ +N +TG +P LS A + L LDLS
Sbjct: 263 -----IPPLP--------------LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG 303
Query: 238 NHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGV 297
NHF G V F L L NN G+L + L L+ L N F G
Sbjct: 304 NHFYGAVPPFFGSCSLLESLALSSNNFS----GELP-MDTLLKMRGLKVLDLSFNEFSGE 358
Query: 298 LPLSIANLSSTIILFTMGLNQIYGTIPPEV-KNLVN-LNGFGLEYNQLTGPIPHAIGELR 355
LP S+ NLS++++ + N G I P + +N N L L+ N TG IP
Sbjct: 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP------- 411
Query: 356 NLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQXXXXXXXXXXXXXXXXXXXXXIPTE 415
+L NC L+ L +S N L+G IP+
Sbjct: 412 ---------PTLSNCSELVSLHLSFNYLSGT-------------------------IPSS 437
Query: 416 VGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDL 475
+G+L L L L N EIP L TLE L ++ N +TG IP L+ ++ + L
Sbjct: 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497
Query: 476 SRNNLSGHIPEF---LENLSFNKM 496
S N L+G IP++ LENL+ K+
Sbjct: 498 SNNRLTGEIPKWIGRLENLAILKL 521
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 122/467 (26%), Positives = 193/467 (41%), Gaps = 58/467 (12%)
Query: 78 VTKLVLRNQSIGGFLSPYVG-NLSFLRFVNLASNNLHGEIP------------------Y 118
T+L L N S F+ P L L++++LA N GEIP +
Sbjct: 246 CTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH 305
Query: 119 EHGQLPPSIGNLSALQNIDIAGNRLHSRVP-ESLGQLRSLSFLDISENAFSGMFHSSIFN 177
+G +PP G+ S L+++ ++ N +P ++L ++R L LD+S N FSG S+ N
Sbjct: 306 FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN 365
Query: 178 ISSLELIYPLE-NRLEGSLPVNIGFSLPN-LEDLSVRQNNYTGSLPHSLSNASNLQLLDL 235
+S+ L L N G + N+ + N L++L ++ N +TG +P +LSN S L L L
Sbjct: 366 LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 425
Query: 236 SLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFI------------------AH 277
S N+ SG + L L L N L +L ++ +
Sbjct: 426 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 485
Query: 278 LTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFG 337
L+NC+ L L N G +P I L + IL + N G IP E+ + +L
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL-KLSNNSFSGNIPAELGDCRSLIWLD 544
Query: 338 LEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNK-----------LTGA 386
L N G IP A+ + G + ++ + + + K G
Sbjct: 545 LNTNLFNGTIPAAM-----FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599
Query: 387 LPPQXXXXXXXXXXXXXXXXXXXXXIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTL 446
Q PT N +++ LD+S N S IP + + L
Sbjct: 600 RSEQLNRLSTRNPCNITSRVYGGHTSPT-FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL 658
Query: 447 EYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSF 493
L + N ++GSIP + L+ + LDLS N L G IP+ + L+
Sbjct: 659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 122/420 (29%), Positives = 181/420 (43%), Gaps = 43/420 (10%)
Query: 74 RHRRVTKLVLRNQSIGGFLSPYVGNLSF-LRFVNLASNNLHGEIPYEHGQLPPSIGNLSA 132
+ R + L L G L + NLS L ++L+SNN G I Q P +
Sbjct: 338 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN-----T 392
Query: 133 LQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLE 192
LQ + + N ++P +L L L +S N SG SS+ ++S L + N LE
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 193 GSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLP 252
G +P + + + LE L + N+ TG +P LSN +NL + LS N +G++ RL
Sbjct: 453 GEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 511
Query: 253 NLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIIL- 311
NL L N+ +G I A L +C L L+TN+F G +P ++ S I
Sbjct: 512 NLAILKLSNNSF-SGNI-----PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 565
Query: 312 FTMGLNQIY---GTIPPEVKNLVNLNGF-GLEYNQLTGPIPHAIGELRNLQLRGNVPSSL 367
F G +Y + E NL F G+ QL + + G+ +
Sbjct: 566 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 625
Query: 368 GNCQNLMLLSVSNNKLTGALPPQXXXXXXXXXXXXXXXXXXXXXIPTEVGNLKNLVQLDL 427
N ++M L +S N L+G IP E+G++ L L+L
Sbjct: 626 DNNGSMMFLDMSYNMLSG-------------------------YIPKEIGSMPYLFILNL 660
Query: 428 SENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEF 487
N S IP + L L + N + G IP A++ L + E+DLS NNLSG IPE
Sbjct: 661 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720
Score = 112 bits (279), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 132/444 (29%), Positives = 187/444 (42%), Gaps = 89/444 (20%)
Query: 59 NSISLCQWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPY 118
NSIS G + L + I G + V L F++++SNN IP+
Sbjct: 158 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF 215
Query: 119 EHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNI 178
+G+ SALQ++DI+GN+L ++ L L+IS N F G
Sbjct: 216 --------LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP-------- 259
Query: 179 SSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASN-LQLLDLSL 237
I PL L +L+ LS+ +N +TG +P LS A + L LDLS
Sbjct: 260 -----IPPLP--------------LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG 300
Query: 238 NHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGV 297
NHF G V F L L NN G+L + L L+ L N F G
Sbjct: 301 NHFYGAVPPFFGSCSLLESLALSSNNFS----GELP-MDTLLKMRGLKVLDLSFNEFSGE 355
Query: 298 LPLSIANLSSTIILFTMGLNQIYGTIPPEV-KNLVN-LNGFGLEYNQLTGPIPHAIGELR 355
LP S+ NLS++++ + N G I P + +N N L L+ N TG IP
Sbjct: 356 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP------- 408
Query: 356 NLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQXXXXXXXXXXXXXXXXXXXXXIPTE 415
+L NC L+ L +S N L+G IP+
Sbjct: 409 ---------PTLSNCSELVSLHLSFNYLSGT-------------------------IPSS 434
Query: 416 VGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDL 475
+G+L L L L N EIP L TLE L ++ N +TG IP L+ ++ + L
Sbjct: 435 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 494
Query: 476 SRNNLSGHIPEF---LENLSFNKM 496
S N L+G IP++ LENL+ K+
Sbjct: 495 SNNRLTGEIPKWIGRLENLAILKL 518
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 122/467 (26%), Positives = 193/467 (41%), Gaps = 58/467 (12%)
Query: 78 VTKLVLRNQSIGGFLSPYVG-NLSFLRFVNLASNNLHGEIP------------------Y 118
T+L L N S F+ P L L++++LA N GEIP +
Sbjct: 243 CTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH 302
Query: 119 EHGQLPPSIGNLSALQNIDIAGNRLHSRVP-ESLGQLRSLSFLDISENAFSGMFHSSIFN 177
+G +PP G+ S L+++ ++ N +P ++L ++R L LD+S N FSG S+ N
Sbjct: 303 FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN 362
Query: 178 ISSLELIYPLE-NRLEGSLPVNIGFSLPN-LEDLSVRQNNYTGSLPHSLSNASNLQLLDL 235
+S+ L L N G + N+ + N L++L ++ N +TG +P +LSN S L L L
Sbjct: 363 LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 422
Query: 236 SLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFI------------------AH 277
S N+ SG + L L L N L +L ++ +
Sbjct: 423 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 482
Query: 278 LTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFG 337
L+NC+ L L N G +P I L + IL + N G IP E+ + +L
Sbjct: 483 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL-KLSNNSFSGNIPAELGDCRSLIWLD 541
Query: 338 LEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNK-----------LTGA 386
L N G IP A+ + G + ++ + + + K G
Sbjct: 542 LNTNLFNGTIPAAM-----FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 596
Query: 387 LPPQXXXXXXXXXXXXXXXXXXXXXIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTL 446
Q PT N +++ LD+S N S IP + + L
Sbjct: 597 RSEQLNRLSTRNPCNITSRVYGGHTSPT-FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL 655
Query: 447 EYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSF 493
L + N ++GSIP + L+ + LDLS N L G IP+ + L+
Sbjct: 656 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 702
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 93/328 (28%), Positives = 142/328 (43%), Gaps = 54/328 (16%)
Query: 33 NETDRLAYLAIKSQLQDPLGVTKSWNNSISLCQ--WTGVTCGHRHR--RVTKLVLRNQSI 88
N D+ A L IK L +P ++ SW + C W GV C + RV L L ++
Sbjct: 4 NPQDKQALLQIKKDLGNPTTLS-SWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL 62
Query: 89 GGFLSPY-----VGNLSFLRFVNLAS-NNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNR 142
PY + NL +L F+ + NNL G IP P+I L+ L + I
Sbjct: 63 P---KPYPIPSSLANLPYLNFLYIGGINNLVGPIP-------PAIAKLTQLHYLYITHTN 112
Query: 143 LHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFS 202
+ +P+ L Q+++L LD S NA SG SI ++ +L I NR+ G++P + G
Sbjct: 113 VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF 172
Query: 203 LPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKN 262
+++ +N TG +P + +N NL +DLS N G + F N +++ KN
Sbjct: 173 SKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231
Query: 263 NLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGT 322
+L L GL N+ G L + N N+IYGT
Sbjct: 232 SLAF----------------DLGKVGLSKNLNG----LDLRN------------NRIYGT 259
Query: 323 IPPEVKNLVNLNGFGLEYNQLTGPIPHA 350
+P + L L+ + +N L G IP
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQG 287
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 17/224 (7%)
Query: 298 LPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNL 357
+P S+ANL L+ G+N + G IPP + L L+ + + ++G IP + +++ L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 358 --------QLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQXXXXXXXXXXXXXXXXXXX 409
L G +P S+ + NL+ ++ N+++GA+P
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 410 XXIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVT---GSIPLALNT 466
IP NL NL +DLS N + V + + +++ NS+ G + L+
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS--- 243
Query: 467 LKSIKELDLSRNNLSGHIPEFLENLSF-NKMNETINDFCHHKPK 509
K++ LDL N + G +P+ L L F + +N + N+ C P+
Sbjct: 244 -KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 116/277 (41%), Gaps = 32/277 (11%)
Query: 136 IDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSL 195
+D+ NR+ + + L L+++EN S + + N+ +L + NRL+ +
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LI 95
Query: 196 PVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLF 255
P+ + L NL L + +N L + + NL+ L++ N F+ L +L
Sbjct: 96 PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE 155
Query: 256 RLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNI-----FGGVLPLSIANLSSTII 310
+L K NL + + ++HL L L+ N F + L + +S
Sbjct: 156 QLTLEKCNLTSIPT---EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212
Query: 311 LFTMGLNQIYG-------------TIPP--EVKNLVNLNGFGLEYNQLT---GPIPHAIG 352
L TM N +YG T P V++LV L L YN ++ G + H +
Sbjct: 213 LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL 272
Query: 353 ELRNLQLRGNV-----PSSLGNCQNLMLLSVSNNKLT 384
L+ +QL G P + L +L+VS N+LT
Sbjct: 273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 71/142 (50%), Gaps = 5/142 (3%)
Query: 138 IAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPV 197
+ GN+LH +L +L +L++L ++ N + + +++L+ + +EN+L+ SLP
Sbjct: 70 LGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPD 126
Query: 198 NIGFSLPNLEDLSVRQNNYTGSLPHSLSNA-SNLQLLDLSLNHFSGQVKIDFNRLPNLFR 256
+ L NL L++ N SLP + + +NL LDLS N + F++L L
Sbjct: 127 GVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKD 185
Query: 257 LNFGKNNLGTGAIGDLDFIAHL 278
L +N L + G D + L
Sbjct: 186 LRLYQNQLKSVPDGVFDRLTSL 207
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
Query: 173 SSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNA-SNLQ 231
S++ +++L + N+L+ SLP + L NL++L + +N SLP + + +NL
Sbjct: 79 SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLT 136
Query: 232 LLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTN 280
L+L+ N K F++L NL L+ N L + G D + L +
Sbjct: 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKD 185
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 412 IPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIK 471
+P E+ NL NL LDLS N + +P L +C L+Y Y N VT ++P L +++
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQ 319
Query: 472 ELDLSRNNLSGHIPEFLENLS 492
L + N L + L S
Sbjct: 320 FLGVEGNPLEKQFLKILTEKS 340
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 15/97 (15%)
Query: 300 LSIANLSSTIILFTMGLNQIY------GTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGE 353
L I N+S+ I + L ++Y +P E+KNL NL L +N+LT +P +G
Sbjct: 234 LQIFNISANIFKYDF-LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAELGS 291
Query: 354 LRNLQ-------LRGNVPSSLGNCQNLMLLSVSNNKL 383
L+ + +P GN NL L V N L
Sbjct: 292 CFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPL 328
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 122 QLPPSIGNLSALQNIDIAGNRLHSRVPESLG---QLRSLSFLD 161
+LP I NLS L+ +D++ NRL S +P LG QL+ F D
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFD 302
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 5/143 (3%)
Query: 138 IAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPV 197
+ GN+LH +L +L +L++L ++ N + + +++L+ + +EN+L+ SLP
Sbjct: 70 LGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPD 126
Query: 198 NIGFSLPNLEDLSVRQNNYTGSLPHSLSNA-SNLQLLDLSLNHFSGQVKIDFNRLPNLFR 256
+ L NL L + N SLP + + +NL LDL N + F++L L +
Sbjct: 127 GVFDKLTNLTYLYLYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQ 185
Query: 257 LNFGKNNLGTGAIGDLDFIAHLT 279
L+ N L + G D + LT
Sbjct: 186 LSLNDNQLKSVPDGVFDRLTSLT 208
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 128 GNLSALQNIDIAGNRLHSRVPESLGQ-LRSLSFLDISENAFSGMFHSSIFNISSLELIYP 186
G L L +D++ N+L S LGQ L +L+ LD+S N + + ++ + L+ +Y
Sbjct: 75 GTLPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 132
Query: 187 LENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNA 227
N L+ +LP + P LE LS+ NN T LP L N
Sbjct: 133 KGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNG 171
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 108/294 (36%), Gaps = 80/294 (27%)
Query: 193 GSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLP 252
SLP I + P L LS+ NN + ++LQ L LS N + +D + +P
Sbjct: 136 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIP 192
Query: 253 NLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGG-------VLPLSIANL 305
+LF N N L T AI IA +L+A N+ G +L L NL
Sbjct: 193 SLFHANVSYNLLSTLAIP----IA----VEELDASHNSINVVRGPVNVELTILKLQHNNL 244
Query: 306 SSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPS 365
+ T L N L L YN+L + H ++
Sbjct: 245 TDTAWLL----------------NYPGLVEVDLSYNELEKIMYHPFVKM----------- 277
Query: 366 SLGNCQNLMLLSVSNNKLTGALPPQXXXXXXXXXXXXXXXXXXXXXIPTEVGNLKNLVQL 425
Q L L +SNN+L IPT L L
Sbjct: 278 -----QRLERLYISNNRLVA-------------------LNLYGQPIPT-------LKVL 306
Query: 426 DLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNN 479
DLS NH + + + LE LY++ NS+ + L L+T ++K L LS N+
Sbjct: 307 DLSHNHL-LHVERNQPQFDRLENLYLDHNSI---VTLKLSTHHTLKNLTLSHND 356
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 33/141 (23%)
Query: 130 LSALQNIDIAGNRLHSR-VPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLE 188
LS+L+ + +AGN +P+ +LR+L+FLD+S+ LE + P
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ--------------CQLEQLSP-- 192
Query: 189 NRLEGSLPVNIGF-SLPNLEDLSVRQNNY--TGSLPHSLSNASNLQLLDLSLNHFSGQVK 245
F SL +L+ L++ NN+ + P+ N+ LQ+LD SLNH K
Sbjct: 193 ----------TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS--LQVLDYSLNHIMTSKK 240
Query: 246 IDFNRLP-NLFRLNFGKNNLG 265
+ P +L LN +N+
Sbjct: 241 QELQHFPSSLAFLNLTQNDFA 261
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 8/123 (6%)
Query: 154 LRSLSFLDISEN----AFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDL 209
LR+L +LDIS AF+G+F+ +SSLE++ N + + +I L NL L
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFN----GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180
Query: 210 SVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAI 269
+ Q P + ++ S+LQ+L++S N+F + L +L L++ N++ T
Sbjct: 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240
Query: 270 GDL 272
+L
Sbjct: 241 QEL 243
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 418 NLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGS-IPLALNTLKSIKELDLS 476
+L+NL+ LD+S H + + ++LE L M GNS + +P L+++ LDLS
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183
Query: 477 RNNLSGHIPEFLENLS 492
+ L P +LS
Sbjct: 184 QCQLEQLSPTAFNSLS 199
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 412 IPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIK 471
+P L+NL LDLS+ P + ++ ++L+ L M N+ L S++
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 226
Query: 472 ELDLSRNNL----SGHIPEFLENLSFNKMNETINDF---CHHK 507
LD S N++ + F +L+F +N T NDF C H+
Sbjct: 227 VLDYSLNHIMTSKKQELQHFPSSLAF--LNLTQNDFACTCEHQ 267
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 108/294 (36%), Gaps = 80/294 (27%)
Query: 193 GSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLP 252
SLP I + P L LS+ NN + ++LQ L LS N + +D + +P
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT---HVDLSLIP 186
Query: 253 NLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGG-------VLPLSIANL 305
+LF N N L T AI IA +L+A N+ G +L L NL
Sbjct: 187 SLFHANVSYNLLSTLAIP----IA----VEELDASHNSINVVRGPVNVELTILKLQHNNL 238
Query: 306 SSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPS 365
+ T L N L L YN+L + H ++
Sbjct: 239 TDTAWLL----------------NYPGLVEVDLSYNELEKIMYHPFVKM----------- 271
Query: 366 SLGNCQNLMLLSVSNNKLTGALPPQXXXXXXXXXXXXXXXXXXXXXIPTEVGNLKNLVQL 425
Q L L +SNN+L IPT L L
Sbjct: 272 -----QRLERLYISNNRLVA-------------------LNLYGQPIPT-------LKVL 300
Query: 426 DLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNN 479
DLS NH + + + LE LY++ NS+ + L L+T ++K L LS N+
Sbjct: 301 DLSHNHL-LHVERNQPQFDRLENLYLDHNSI---VTLKLSTHHTLKNLTLSHND 350
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 128 GNLSALQNIDIAGNRLHSRVPESLGQ-LRSLSFLDISENAFSGMFHSSIFNISSLELIYP 186
G L L +D++ N+L S LGQ L +L+ LD+S N + + ++ + L+ +Y
Sbjct: 74 GTLPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 187 LENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNA 227
N L+ +LP + P LE LS+ NN T LP L N
Sbjct: 132 KGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNG 170
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 97/253 (38%), Gaps = 28/253 (11%)
Query: 119 EHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNI 178
E G P+ + S + I R + VP S+ + +L++ EN+ + + ++
Sbjct: 1 ETGTSCPAACSCSNQASRVICTRRELAEVPASIPV--NTRYLNLQENSIQVIRTDTFKHL 58
Query: 179 SSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLN 238
LE I L L + V LP+L L + N T + S L+ L L N
Sbjct: 59 RHLE-ILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNN 117
Query: 239 HFSGQVKIDFNRLPNLFRLNFGK--------------------NNLGTGAIGDLDFIAHL 278
FNR+P+L RL+ G+ NLG + D I +L
Sbjct: 118 PIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKD---IPNL 174
Query: 279 TNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGL 338
T +LE L N + P S L+S L+ M Q+ +L +L L
Sbjct: 175 TALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHA-QVATIERNAFDDLKSLEELNL 233
Query: 339 EYNQLTGPIPHAI 351
+N L +PH +
Sbjct: 234 SHNNLMS-LPHDL 245
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 415 EVGNLKNLV---QLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIK 471
++ NL LV +L+LS N + P S T+L L++ V A + LKS++
Sbjct: 170 DIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLE 229
Query: 472 ELDLSRNNL 480
EL+LS NNL
Sbjct: 230 ELNLSHNNL 238
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 5/101 (4%)
Query: 128 GNLSALQNIDIAGNRLHSRVPESLGQ-LRSLSFLDISENAFSGMFHSSIFNISSLELIYP 186
G L L +D++ N+L S +P LGQ L +L+ LD+S N + + ++ + L+ +Y
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 187 LENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNA 227
N L+ +LP + P LE LS+ NN T LP L N
Sbjct: 132 KGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNG 170
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 5/101 (4%)
Query: 128 GNLSALQNIDIAGNRLHSRVPESLGQ-LRSLSFLDISENAFSGMFHSSIFNISSLELIYP 186
G L L +D++ N+L S +P LGQ L +L+ LD+S N + + ++ + L+ +Y
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 187 LENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNA 227
N L+ +LP + P LE LS+ NN T LP L N
Sbjct: 132 KGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNG 170
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 5/101 (4%)
Query: 128 GNLSALQNIDIAGNRLHSRVPESLGQ-LRSLSFLDISENAFSGMFHSSIFNISSLELIYP 186
G L L +D++ N+L S +P LGQ L +L+ LD+S N + + ++ + L+ +Y
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 187 LENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNA 227
N L+ +LP + P LE LS+ NN T LP L N
Sbjct: 132 KGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNG 170
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 31/140 (22%)
Query: 130 LSALQNIDIAGNRLHSR-VPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLE 188
LS+L+ + +AGN +P+ +LR+L+FLD+S+
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC----------------------- 480
Query: 189 NRLEGSLPVNIGFSLPNLEDLSVRQNNY--TGSLPHSLSNASNLQLLDLSLNHFSGQVKI 246
+LE P SL +L+ L++ NN+ + P+ N+ LQ+LD SLNH K
Sbjct: 481 -QLEQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFPYKCLNS--LQVLDYSLNHIMTSKKQ 536
Query: 247 DFNRLP-NLFRLNFGKNNLG 265
+ P +L LN +N+
Sbjct: 537 ELQHFPSSLAFLNLTQNDFA 556
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 73/148 (49%), Gaps = 9/148 (6%)
Query: 130 LSALQNIDIAGNRLHSRVPESLG-QLRSLSFLDISEN----AFSGMFHSSIFNISSLELI 184
L L+++D + L S+ LR+L +LDIS AF+G+F+ +SSLE++
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG----LSSLEVL 450
Query: 185 YPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQV 244
N + + +I L NL L + Q P + ++ S+LQ+L++S N+F
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 510
Query: 245 KIDFNRLPNLFRLNFGKNNLGTGAIGDL 272
+ L +L L++ N++ T +L
Sbjct: 511 TFPYKCLNSLQVLDYSLNHIMTSKKQEL 538
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 418 NLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGS-IPLALNTLKSIKELDLS 476
+L+NL+ LD+S H + + ++LE L M GNS + +P L+++ LDLS
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 477 RNNLSGHIPEFLENLS 492
+ L P +LS
Sbjct: 479 QCQLEQLSPTAFNSLS 494
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 412 IPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIK 471
+P L+NL LDLS+ P + ++ ++L+ L M N+ L S++
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 521
Query: 472 ELDLSRNNL----SGHIPEFLENLSFNKMNETINDF---CHHK 507
LD S N++ + F +L+F +N T NDF C H+
Sbjct: 522 VLDYSLNHIMTSKKQELQHFPSSLAF--LNLTQNDFACTCEHQ 562
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 98/253 (38%), Gaps = 28/253 (11%)
Query: 119 EHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNI 178
E G P+ + S + I R + VP S+ + +L++ EN+ + + ++
Sbjct: 1 ETGTSCPAACSCSNQASRVICTRRELAEVPASIPV--NTRYLNLQENSIQVIRTDTFKHL 58
Query: 179 SSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLN 238
LE++ L L + V LP+L L + N T + S L+ L L N
Sbjct: 59 RHLEILQ-LSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNN 117
Query: 239 HFSGQVKIDFNRLPNLFRLNFGK--------------------NNLGTGAIGDLDFIAHL 278
FNR+P+L RL+ G+ NLG + D I +L
Sbjct: 118 PIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKD---IPNL 174
Query: 279 TNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGL 338
T +LE L N + P S L+S L+ M Q+ +L +L L
Sbjct: 175 TALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHA-QVATIERNAFDDLKSLEELNL 233
Query: 339 EYNQLTGPIPHAI 351
+N L +PH +
Sbjct: 234 SHNNLMS-LPHDL 245
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 415 EVGNLKNLV---QLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIK 471
++ NL LV +L+LS N + P S T+L L++ V A + LKS++
Sbjct: 170 DIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLE 229
Query: 472 ELDLSRNNL 480
EL+LS NNL
Sbjct: 230 ELNLSHNNL 238
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 97/217 (44%), Gaps = 39/217 (17%)
Query: 76 RRVTKLVL-RNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQ 134
+ +T+L L +NQ +L P G L+ L+ ++ +SN + + EH +L P G L
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF--LVCEH-ELEPLQG--KTLS 177
Query: 135 NIDIAGNRLHSRVPESLGQLRS------LSFLDISENAF----SGMFHSSIFNISSLELI 184
+A N L+SRV G+ + L LD+S N + +G F ++I + LI
Sbjct: 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237
Query: 185 YPLENRLEGSLPVNIGFSLPNLED-----------LSVRQNNYTGSLPHSLSNA-----S 228
L + + G+ GF N++D SVR + + SL++
Sbjct: 238 --LAHHIMGA-----GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLK 290
Query: 229 NLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLG 265
+L++L+L+ N + F L NL LN N LG
Sbjct: 291 DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 97/252 (38%), Gaps = 46/252 (18%)
Query: 95 YVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQL 154
Y NL L ++L+ N + Y H PS G L++L++ID + N++ L L
Sbjct: 118 YFRNLKALTRLDLSKNQIRS--LYLH----PSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171
Query: 155 --RSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVR 212
++LSF ++ N+ S ++ + + P N + LE L V
Sbjct: 172 QGKTLSFFSLAANSL-----YSRVSVDWGKCMNPFRNMV--------------LEILDVS 212
Query: 213 QNNYTGSLPHSLSNA-SNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGD 271
N +T + + SNA S Q L L H F+ + + + F L ++
Sbjct: 213 GNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA--GLARSSVRH 270
Query: 272 LDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLV 331
LD S F L++ +F + L + NL+ N+I L
Sbjct: 271 LDL-------SHGFVFSLNSRVFETLKDLKVLNLA---------YNKINKIADEAFYGLD 314
Query: 332 NLNGFGLEYNQL 343
NL L YN L
Sbjct: 315 NLQVLNLSYNLL 326
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 73/148 (49%), Gaps = 9/148 (6%)
Query: 130 LSALQNIDIAGNRLHSRVPESLG-QLRSLSFLDISEN----AFSGMFHSSIFNISSLELI 184
L L+++D + L S+ LR+L +LDIS AF+G+F+ +SSLE++
Sbjct: 419 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG----LSSLEVL 474
Query: 185 YPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQV 244
N + + +I L NL L + Q P + ++ S+LQ+L++S N+F
Sbjct: 475 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 534
Query: 245 KIDFNRLPNLFRLNFGKNNLGTGAIGDL 272
+ L +L L++ N++ T +L
Sbjct: 535 TFPYKCLNSLQVLDYSLNHIMTSKKQEL 562
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 418 NLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGS-IPLALNTLKSIKELDLS 476
+L+NL+ LD+S H + + ++LE L M GNS + +P L+++ LDLS
Sbjct: 443 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 502
Query: 477 RNNLSGHIPEFLENLS 492
+ L P +LS
Sbjct: 503 QCQLEQLSPTAFNSLS 518
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 412 IPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIK 471
+P L+NL LDLS+ P + ++ ++L+ L M N+ L S++
Sbjct: 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 545
Query: 472 ELDLSRNNL----SGHIPEFLENLSFNKMNETINDF---CHHK 507
LD S N++ + F +L+F +N T NDF C H+
Sbjct: 546 VLDYSLNHIMTSKKQELQHFPSSLAF--LNLTQNDFACTCEHQ 586
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 126 SIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIY 185
S + LQ +D++ + + + L LS L ++ N + + +SSL+ +
Sbjct: 71 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130
Query: 186 PLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTG-SLPHSLSNASNLQLLDLSLN 238
+E L IG L L++L+V N LP SN +NL+ LDLS N
Sbjct: 131 AVETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 48/119 (40%), Gaps = 1/119 (0%)
Query: 160 LDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGS 219
LD+ N S + + ++ L L+Y +N+L+ +LP I L NLE L V N
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 220 LPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHL 278
NL L L N F+ L L L+ G N L + G D + L
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 5/101 (4%)
Query: 128 GNLSALQNIDIAGNRLHSRVPESLGQ-LRSLSFLDISENAFSGMFHSSIFNISSLELIYP 186
G L L +D++ N+L S +P LGQ L +L+ LD+S N + + ++ + L+ +Y
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 187 LENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNA 227
N L+ +LP + P LE LS+ N+ T LP L N
Sbjct: 132 KGNELK-TLPPGLLTPTPKLEKLSLANNDLT-ELPAGLLNG 170
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
Query: 128 GNLSALQNIDIAGNRLHSRVPESLGQ-LRSLSFLDISENAFSGMFHSSIFNISSLELIYP 186
G L L +D++ N+L S LGQ L +L+ LD+S N + + ++ + L+ +Y
Sbjct: 74 GTLPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 187 LENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNA 227
N L+ +LP + P LE LS+ N T LP L N
Sbjct: 132 KGNELK-TLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNG 170
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
Query: 128 GNLSALQNIDIAGNRLHSRVPESLGQ-LRSLSFLDISENAFSGMFHSSIFNISSLELIYP 186
G L L +D++ N+L S LGQ L +L+ LD+S N + + ++ + L+ +Y
Sbjct: 74 GTLPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 187 LENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNA 227
N L+ +LP + P LE LS+ N T LP L N
Sbjct: 132 KGNELK-TLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNG 170
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 15/77 (19%)
Query: 94 PYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQ 153
P + NL FL + A NNL +P LPPS L+ +++ N L + +PE L Q
Sbjct: 231 PELQNLPFLTTI-YADNNLLKTLP----DLPPS------LEALNVRDNYL-TDLPE-LPQ 277
Query: 154 LRSLSFLDISENAFSGM 170
SL+FLD+SEN FSG+
Sbjct: 278 --SLTFLDVSENIFSGL 292
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 75/188 (39%), Gaps = 21/188 (11%)
Query: 193 GSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLP 252
+ P S ++ S R + +P +N Q+L L N + F+ L
Sbjct: 11 AACPSQCSCSGTTVDCRSKRHASVPAGIP------TNAQILYLHDNQITKLEPGVFDSLI 64
Query: 253 NLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILF 312
NL L G N LG +G D + LT L TN VLP ++ + +
Sbjct: 65 NLKELYLGSNQLGALPVGVFDSLTQLT------VLDLGTNQL-TVLPSAVFDRLVHLKEL 117
Query: 313 TMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHA----IGELRNLQLRGNVPSSLG 368
M N++ +P ++ L +L L+ NQL IPH + L + L GN
Sbjct: 118 FMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS-IPHGAFDRLSSLTHAYLFGNPWDC-- 173
Query: 369 NCQNLMLL 376
C+++M L
Sbjct: 174 ECRDIMYL 181
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Query: 128 GNLSALQNIDIAGNRLHSRVPESLGQ-LRSLSFLDISENAFSGMFHSSIFNISSLELIYP 186
G L L +D++ N+L S +P LGQ L +L+ LD+S N + + ++ + L+ +Y
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 187 LENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNA 227
N L+ +LP + P LE LS+ N T LP L N
Sbjct: 132 KGNELK-TLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNG 170
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Query: 128 GNLSALQNIDIAGNRLHSRVPESLGQ-LRSLSFLDISENAFSGMFHSSIFNISSLELIYP 186
G L L +D++ N+L S +P LGQ L +L+ LD+S N + + ++ + L+ +Y
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 187 LENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNA 227
N L+ +LP + P LE LS+ N T LP L N
Sbjct: 132 KGNELK-TLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNG 170
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 73/175 (41%), Gaps = 37/175 (21%)
Query: 147 VPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNL 206
VP+ L Q + L+IS+N S ++ S I ++S L ++ NR++
Sbjct: 15 VPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-------------Y 59
Query: 207 EDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGT 266
D+SV + N L+ LDLS N VKI + NL L+ N
Sbjct: 60 LDISVFKFN------------QELEYLDLSHNKL---VKISCHPTVNLKHLDLSFN---- 100
Query: 267 GAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYG 321
A L N S+L+ GL T L IA+L+ + +L +G + YG
Sbjct: 101 -AFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLG--ETYG 152
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 8/62 (12%)
Query: 109 SNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLH--SRVPESLGQLRSLSFLDISENA 166
SNNL + +E+ G+L+ L+ + + N+L S++ E Q++SL LDIS+N+
Sbjct: 332 SNNLLTDTVFEN------CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385
Query: 167 FS 168
S
Sbjct: 386 VS 387
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 8/108 (7%)
Query: 154 LRSLSFLDISEN----AFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDL 209
LR+L +LDIS AF+G+F+ +SSLE++ N + + +I L NL L
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNG----LSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 210 SVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRL 257
+ Q P + ++ S+LQ+L+++ N F+RL +L ++
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKI 523
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 418 NLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGS-IPLALNTLKSIKELDLS 476
+L+NL+ LD+S H + + ++LE L M GNS + +P L+++ LDLS
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 477 RNNLSGHIPEFLENLS 492
+ L P +LS
Sbjct: 479 QCQLEQLSPTAFNSLS 494
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 78/183 (42%), Gaps = 9/183 (4%)
Query: 98 NLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSL 157
+L L F++L+ N L + G S ++L+ +D++ N + + LG L L
Sbjct: 345 DLPSLEFLDLSRNGLSFK-----GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQL 398
Query: 158 SFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFS-LPNLEDLSVRQNNY 216
LD + M S+F +S LIY + + N F+ L +LE L + N++
Sbjct: 399 EHLDFQHSNLKQMSEFSVF-LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457
Query: 217 TGS-LPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFI 275
+ LP + NL LDLS FN L +L LN N L + G D +
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL 517
Query: 276 AHL 278
L
Sbjct: 518 TSL 520
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 133 LQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLE 192
LQ +D++ + + + L LS L ++ N + + +SSL+ + +E L
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 193 GSLPVNIGFSLPNLEDLSVRQNNYTG-SLPHSLSNASNLQLLDLSLN 238
IG L L++L+V N LP SN +NL+ LDLS N
Sbjct: 114 SLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 2/115 (1%)
Query: 126 SIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIY 185
S N S LQ +D++ + + ++ L LS L ++ N S ++SLE +
Sbjct: 46 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 105
Query: 186 PLENRLEGSLPVNIGFSLPNLEDLSVRQNN-YTGSLPHSLSNASNLQLLDLSLNH 239
+E +L IG L L+ L+V N ++ LP SN +NL +DLS N+
Sbjct: 106 AVETKLASLESFPIG-QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 159
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 2/115 (1%)
Query: 126 SIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIY 185
S N S LQ +D++ + + ++ L LS L ++ N S ++SLE +
Sbjct: 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110
Query: 186 PLENRLEGSLPVNIGFSLPNLEDLSVRQNN-YTGSLPHSLSNASNLQLLDLSLNH 239
+E +L IG L L+ L+V N ++ LP SN +NL +DLS N+
Sbjct: 111 AVETKLASLESFPIG-QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 415 EVGNLKNLV---QLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIK 471
E+ NL L+ +LDLS NH S P S L+ L+M + + A + L+S+
Sbjct: 199 EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLV 258
Query: 472 ELDLSRNNLS 481
E++L+ NNL+
Sbjct: 259 EINLAHNNLT 268
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 412 IPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIK 471
+P E+ N K+L +DLS N S S S T L L + N + P + LKS++
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 472 ELDLSRNNLSGHIPE 486
L L N++S +PE
Sbjct: 106 LLSLHGNDIS-VVPE 119
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Query: 161 DISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSL 220
D+S++ + S + + LE + +N + + N + L +L L++ QN + GS+
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEI-NKIDDNAFWGLTHLLKLNLSQN-FLGSI 338
Query: 221 PHSL-SNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHL 278
+ N L++LDLS NH F LPNL L N L + G D + L
Sbjct: 339 DSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSL 397
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 57/141 (40%), Gaps = 3/141 (2%)
Query: 130 LSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLEN 189
+ LQ +D+ L +P + L L L +S N F + S N SL +Y N
Sbjct: 274 FTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGN 332
Query: 190 RLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHS--LSNASNLQLLDLSLNHFSGQVKID 247
+ L V L NL+ L + N+ S S L N S+LQ L+LS N G
Sbjct: 333 VKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQA 392
Query: 248 FNRLPNLFRLNFGKNNLGTGA 268
F P L L+ L A
Sbjct: 393 FKECPQLELLDLAFTRLHINA 413
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 412 IPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPL-ALNTLKSI 470
+P+ + L L +L LS NHF +S + +L +LY+ GN + + L L ++
Sbjct: 290 LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNL 349
Query: 471 KELDLSRNNLSG 482
+ LDLS N++
Sbjct: 350 QTLDLSHNDIEA 361
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 92/371 (24%), Positives = 151/371 (40%), Gaps = 74/371 (19%)
Query: 138 IAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPV 197
+ +RL + + + L +L+ ++ S N + + + + N++ L I N++ P+
Sbjct: 46 LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIADITPL 103
Query: 198 NIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRL 257
+L NL L++ N T P L N +NL L+LS N S + + L +L +L
Sbjct: 104 ---ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISAL--SGLTSLQQL 156
Query: 258 NFGKN----------------NLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLS 301
NFG ++ + + D+ +A LTN LE+ N + PL
Sbjct: 157 NFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTN---LESLIATNNQISDITPLG 213
Query: 302 I-ANLSSTIILFTMGLNQI--YGTIPPEVKNLVNLNGFGLEYNQLTGPIP-HAIGELRNL 357
I NL ++ NQ+ GT+ +L NL L NQ++ P + +L L
Sbjct: 214 ILTNLDE----LSLNGNQLKDIGTL----ASLTNLTDLDLANNQISNLAPLSGLTKLTEL 265
Query: 358 QLRGNVPSSLGNCQNLMLLS---VSNNKLTGALPPQXXXXXXXXXXXXXXXXXXXXXIPT 414
+L N S++ L L+ ++ N+L P
Sbjct: 266 KLGANQISNISPLAGLTALTNLELNENQLEDISP-------------------------- 299
Query: 415 EVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELD 474
+ NLKNL L L N+ S PV S+ T L+ L+ N V+ LA L +I L
Sbjct: 300 -ISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFSNNKVSDVSSLA--NLTNINWLS 354
Query: 475 LSRNNLSGHIP 485
N +S P
Sbjct: 355 AGHNQISDLTP 365
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 92/371 (24%), Positives = 151/371 (40%), Gaps = 74/371 (19%)
Query: 138 IAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPV 197
+ +RL + + + L +L+ ++ S N + + + + N++ L I N++ P+
Sbjct: 46 LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIADITPL 103
Query: 198 NIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRL 257
+L NL L++ N T P L N +NL L+LS N S + + L +L +L
Sbjct: 104 ---ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISAL--SGLTSLQQL 156
Query: 258 NFGKN----------------NLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLS 301
NFG ++ + + D+ +A LTN LE+ N + PL
Sbjct: 157 NFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTN---LESLIATNNQISDITPLG 213
Query: 302 I-ANLSSTIILFTMGLNQI--YGTIPPEVKNLVNLNGFGLEYNQLTGPIP-HAIGELRNL 357
I NL ++ NQ+ GT+ +L NL L NQ++ P + +L L
Sbjct: 214 ILTNLDE----LSLNGNQLKDIGTL----ASLTNLTDLDLANNQISNLAPLSGLTKLTEL 265
Query: 358 QLRGNVPSSLGNCQNLMLLS---VSNNKLTGALPPQXXXXXXXXXXXXXXXXXXXXXIPT 414
+L N S++ L L+ ++ N+L P
Sbjct: 266 KLGANQISNISPLAGLTALTNLELNENQLEDISP-------------------------- 299
Query: 415 EVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELD 474
+ NLKNL L L N+ S PV S+ T L+ L+ N V+ LA L +I L
Sbjct: 300 -ISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFYNNKVSDVSSLA--NLTNINWLS 354
Query: 475 LSRNNLSGHIP 485
N +S P
Sbjct: 355 AGHNQISDLTP 365
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 92/372 (24%), Positives = 151/372 (40%), Gaps = 75/372 (20%)
Query: 138 IAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPV 197
+ +RL + + + L +L+ ++ S N + + + + N++ L I N++ P+
Sbjct: 46 LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIADITPL 103
Query: 198 NIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRL 257
+L NL L++ N T P L N +NL L+LS N S + + L +L +L
Sbjct: 104 ---ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISAL--SGLTSLQQL 156
Query: 258 NFGKN-----------------NLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPL 300
NF N ++ + + D+ +A LTN LE+ N + PL
Sbjct: 157 NFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTN---LESLIATNNQISDITPL 213
Query: 301 SI-ANLSSTIILFTMGLNQI--YGTIPPEVKNLVNLNGFGLEYNQLTGPIP-HAIGELRN 356
I NL ++ NQ+ GT+ +L NL L NQ++ P + +L
Sbjct: 214 GILTNLDE----LSLNGNQLKDIGTL----ASLTNLTDLDLANNQISNLAPLSGLTKLTE 265
Query: 357 LQLRGNVPSSLGNCQNLMLLS---VSNNKLTGALPPQXXXXXXXXXXXXXXXXXXXXXIP 413
L+L N S++ L L+ ++ N+L P
Sbjct: 266 LKLGANQISNISPLAGLTALTNLELNENQLEDISP------------------------- 300
Query: 414 TEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKEL 473
+ NLKNL L L N+ S PV S+ T L+ L+ N V+ LA L +I L
Sbjct: 301 --ISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFYNNKVSDVSSLA--NLTNINWL 354
Query: 474 DLSRNNLSGHIP 485
N +S P
Sbjct: 355 SAGHNQISDLTP 366
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 113/451 (25%), Positives = 178/451 (39%), Gaps = 108/451 (23%)
Query: 42 AIKSQLQDPLGVTKSWNNSISLCQWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSF 101
A+ +++ LG T + +++S VT R L +SI G Y+ NL+
Sbjct: 17 ALAEKMKTVLGKT-NVTDTVSQTDLDQVTTLQADR------LGIKSIDGV--EYLNNLTQ 67
Query: 102 LRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLD 161
+ F N N L P + NL+ L +I + N++ P L L +L+ L
Sbjct: 68 INFSN---NQLTDITPLK---------NLTKLVDILMNNNQIADITP--LANLTNLTGL- 112
Query: 162 ISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLP 221
+F++ I +I L+ + L NRLE S + D+S
Sbjct: 113 -------TLFNNQITDIDPLKNLTNL-NRLE--------LSSNTISDIS----------- 145
Query: 222 HSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNC 281
+LS ++LQ L S N + D L NL L + ++ + + D+ +A LTN
Sbjct: 146 -ALSGLTSLQQLSFSSNQVT-----DLKPLANLTTLE--RLDISSNKVSDISVLAKLTN- 196
Query: 282 SKLEAFGLDTNIFGGVLPLSI-ANLSSTIILFTMGLNQI--YGTIPPEVKNLVNLNGFGL 338
LE+ N + PL I NL ++ NQ+ GT+ +L NL L
Sbjct: 197 --LESLIATNNQISDITPLGILTNLDE----LSLNGNQLKDIGTL----ASLTNLTDLDL 246
Query: 339 EYNQLTGPIP-HAIGELRNLQLRGNVPSSLGNCQNLMLLS---VSNNKLTGALPPQXXXX 394
NQ++ P + +L L+L N S++ L L+ ++ N+L P
Sbjct: 247 ANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP------ 300
Query: 395 XXXXXXXXXXXXXXXXXIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGN 454
+ NLKNL L L N+ S PV S+ T L+ L+ N
Sbjct: 301 ---------------------ISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFSNN 337
Query: 455 SVTGSIPLALNTLKSIKELDLSRNNLSGHIP 485
V+ LA L +I L N +S P
Sbjct: 338 KVSDVSSLA--NLTNINWLSAGHNQISDLTP 366
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 92/371 (24%), Positives = 148/371 (39%), Gaps = 74/371 (19%)
Query: 138 IAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPV 197
+ +RL + + + L +L+ ++ S N + + + + N++ L I N++ P+
Sbjct: 50 LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIADITPL 107
Query: 198 NIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFS---------------- 241
+L NL L++ N T P L N +NL L+LS N S
Sbjct: 108 ---ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 162
Query: 242 GQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLS 301
G D L NL L + ++ + + D+ +A LTN LE+ N + PL
Sbjct: 163 GNQVTDLKPLANLTTLE--RLDISSNKVSDISVLAKLTN---LESLIATNNQISDITPLG 217
Query: 302 I-ANLSSTIILFTMGLNQI--YGTIPPEVKNLVNLNGFGLEYNQLTGPIP-HAIGELRNL 357
I NL ++ NQ+ GT+ +L NL L NQ++ P + +L L
Sbjct: 218 ILTNLDE----LSLNGNQLKDIGTL----ASLTNLTDLDLANNQISNLAPLSGLTKLTEL 269
Query: 358 QLRGNVPSSLGNCQNLMLLS---VSNNKLTGALPPQXXXXXXXXXXXXXXXXXXXXXIPT 414
+L N S++ L L+ ++ N+L P
Sbjct: 270 KLGANQISNISPLAGLTALTNLELNENQLEDISP-------------------------- 303
Query: 415 EVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELD 474
+ NLKNL L L N+ S PV S+ T L+ L+ N V+ LA L +I L
Sbjct: 304 -ISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFANNKVSDVSSLA--NLTNINWLS 358
Query: 475 LSRNNLSGHIP 485
N +S P
Sbjct: 359 AGHNQISDLTP 369
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 116/297 (39%), Gaps = 68/297 (22%)
Query: 131 SALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYP-LEN 189
+++QN+ +A N+L L SE+ FSG+ + N++ L+L Y L +
Sbjct: 222 TSIQNLSLANNQL----------------LATSESTFSGLKWT---NLTQLDLSYNNLHD 262
Query: 190 RLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKI--- 246
GS LP+L LS+ NN P S SNL+ L L V +
Sbjct: 263 VGNGSFSY-----LPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASH 317
Query: 247 ------DFNRLPNLFRLNFGKNNLG-------TGAIGDLDFIAHLTNCSKLEAFGLDTNI 293
F L L LN NN+ TG + L +++ + L+ +T +
Sbjct: 318 PNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVS-LKYLSLSKTFTSLQTLTNETFV 376
Query: 294 FGGVLPLSIANLSSTII---------------LFTMGLNQIYGTIP-PEVKNLVNLNGFG 337
PL NL+ I + +GLN+I + E + L N+
Sbjct: 377 SLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIY 436
Query: 338 LEYN---QLTGPIPHAIGELRNLQLR----GNV---PSSLGNCQNLMLLSVSNNKLT 384
L YN QL+ + L+ L LR NV PS +NL +L +SNN +
Sbjct: 437 LSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIA 493
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 421 NLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSR 477
NL QLDLS N+ S S +L YL +E N++ P + L +++ L L R
Sbjct: 249 NLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKR 305
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 113/451 (25%), Positives = 178/451 (39%), Gaps = 108/451 (23%)
Query: 42 AIKSQLQDPLGVTKSWNNSISLCQWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSF 101
A+ +++ LG T + +++S VT R L +SI G Y+ NL+
Sbjct: 17 ALAEKMKTVLGKT-NVTDTVSQTDLDQVTTLQADR------LGIKSIDGV--EYLNNLTQ 67
Query: 102 LRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLD 161
+ F N N L P + NL+ L +I + N++ P L L +L+ L
Sbjct: 68 INFSN---NQLTDITPLK---------NLTKLVDILMNNNQIADITP--LANLTNLTGL- 112
Query: 162 ISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLP 221
+F++ I +I L+ + L NRLE S + D+S
Sbjct: 113 -------TLFNNQITDIDPLKNLTNL-NRLE--------LSSNTISDIS----------- 145
Query: 222 HSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNC 281
+LS ++LQ L S N + D L NL L + ++ + + D+ +A LTN
Sbjct: 146 -ALSGLTSLQQLSFSSNQVT-----DLKPLANLTTLE--RLDISSNKVSDISVLAKLTN- 196
Query: 282 SKLEAFGLDTNIFGGVLPLSI-ANLSSTIILFTMGLNQI--YGTIPPEVKNLVNLNGFGL 338
LE+ N + PL I NL ++ NQ+ GT+ +L NL L
Sbjct: 197 --LESLIATNNQISDITPLGILTNLDE----LSLNGNQLKDIGTL----ASLTNLTDLDL 246
Query: 339 EYNQLTGPIP-HAIGELRNLQLRGNVPSSLGNCQNLMLLS---VSNNKLTGALPPQXXXX 394
NQ++ P + +L L+L N S++ L L+ ++ N+L P
Sbjct: 247 ANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP------ 300
Query: 395 XXXXXXXXXXXXXXXXXIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGN 454
+ NLKNL L L N+ S PV S+ T L+ L+ N
Sbjct: 301 ---------------------ISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFYNN 337
Query: 455 SVTGSIPLALNTLKSIKELDLSRNNLSGHIP 485
V+ LA L +I L N +S P
Sbjct: 338 KVSDVSSLA--NLTNINWLSAGHNQISDLTP 366
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 92/371 (24%), Positives = 148/371 (39%), Gaps = 74/371 (19%)
Query: 138 IAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPV 197
+ +RL + + + L +L+ ++ S N + + + + N++ L I N++ P+
Sbjct: 51 LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIADITPL 108
Query: 198 NIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFS---------------- 241
+L NL L++ N T P L N +NL L+LS N S
Sbjct: 109 ---ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 163
Query: 242 GQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLS 301
G D L NL L + ++ + + D+ +A LTN LE+ N + PL
Sbjct: 164 GNQVTDLKPLANLTTLE--RLDISSNKVSDISVLAKLTN---LESLIATNNQISDITPLG 218
Query: 302 I-ANLSSTIILFTMGLNQI--YGTIPPEVKNLVNLNGFGLEYNQLTGPIP-HAIGELRNL 357
I NL ++ NQ+ GT+ +L NL L NQ++ P + +L L
Sbjct: 219 ILTNLDE----LSLNGNQLKDIGTL----ASLTNLTDLDLANNQISNLAPLSGLTKLTEL 270
Query: 358 QLRGNVPSSLGNCQNLMLLS---VSNNKLTGALPPQXXXXXXXXXXXXXXXXXXXXXIPT 414
+L N S++ L L+ ++ N+L P
Sbjct: 271 KLGANQISNISPLAGLTALTNLELNENQLEDISP-------------------------- 304
Query: 415 EVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELD 474
+ NLKNL L L N+ S PV S+ T L+ L+ N V+ LA L +I L
Sbjct: 305 -ISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFYNNKVSDVSSLA--NLTNINWLS 359
Query: 475 LSRNNLSGHIP 485
N +S P
Sbjct: 360 AGHNQISDLTP 370
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 85/356 (23%), Positives = 130/356 (36%), Gaps = 79/356 (22%)
Query: 151 LGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLS 210
LG + DIS F G+ S+ +I+ L+ ++ N L++L
Sbjct: 232 LGTFEDMDDEDISPAVFEGLCEMSVESIN-------LQKHYFFNISSNTFHCFSGLQELD 284
Query: 211 VRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKN----NLGT 266
+ + LP L S L+ L LS N F +I + P+L L+ N LGT
Sbjct: 285 LTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT 343
Query: 267 GAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPE 326
G + +L+ + L L ++T+ NL +
Sbjct: 344 GCLENLENLREL----DLSHDDIETS--------DCCNL--------------------Q 371
Query: 327 VKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQL------RGNVPSSLGNCQNLMLLSVSN 380
++NL +L L YN+ A E L+L R V + QNL LL V N
Sbjct: 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431
Query: 381 NKLTGALPPQXXXXXXXXXXXXXXXXXXXXXIPTE--VGNLKNLVQLDLSENHF---SIE 435
L+ +L I +E L L L+L NHF +I+
Sbjct: 432 --LSHSL----------------------LDISSEQLFDGLPALQHLNLQGNHFPKGNIQ 467
Query: 436 IPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENL 491
SL LE L + ++ A +LK + +DLS N L+ E L +L
Sbjct: 468 KTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL 523
>pdb|3MGU|A Chain A, Saccharomyces Cerevisiae Tpa1
Length = 644
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 24/161 (14%)
Query: 143 LHSRVPESLGQL-RSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIG- 200
+ + E G+ R+ + + E+ GMF+ I++ + + L+ +E S P N G
Sbjct: 1 MKRKTAEVKGEKERNSKQISLEEDKIKGMFNPKIWDKTFQD---GLKKEIEDSQPYNWGT 57
Query: 201 -FSLPNLEDL--SVRQNNYTGSLPHSLSNASNLQLLDLS--LNHFSGQVKIDFNRLPNLF 255
L N +DL +VR+ T H +++ ++ S L + SG D +RLPNLF
Sbjct: 58 IHELVN-DDLLRAVRKEIETEI--HFTKKETDIYRVNQSGDLANLSGLDWDDLSRLPNLF 114
Query: 256 RLN---FGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNI 293
+L + K DF ++T KL D +I
Sbjct: 115 KLRQILYSKQY--------RDFFGYVTKAGKLSGSKTDMSI 147
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 9/106 (8%)
Query: 195 LPVNIGFSLPNLEDLSVRQNNYTGSLP-HSLSNASNLQLLDLSLNHFSGQVKIDFNRLPN 253
+P N+ + NL L +R N +P H + NL+ ++ N + F ++P
Sbjct: 138 IPANLLTDMRNLSHLELRAN--IEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPK 195
Query: 254 LFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLP 299
L +LN N L + G D + + L+ L TN + P
Sbjct: 196 LKQLNLASNQLKSVPDGIFDRL------TSLQKIWLHTNPWDCSCP 235
>pdb|3KT7|A Chain A, Crystal Structure Of Tpa1 From Saccharomyces Cerevisiae, A
Component Of The Messenger Ribonucleoprotein Complex
Length = 633
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 23/141 (16%)
Query: 162 ISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIG--FSLPNLEDL--SVRQNNYT 217
+ E+ GMF+ I++ + + L+ +E S P N G L N +DL +VR+ T
Sbjct: 2 LEEDKIKGMFNPKIWDKTFQD---GLKKEIEDSQPYNWGTIHELVN-DDLLRAVRKEIET 57
Query: 218 GSLPHSLSNASNLQLLDLS--LNHFSGQVKIDFNRLPNLFRLN---FGKNNLGTGAIGDL 272
H +++ ++ S L + SG D +RLPNLF+L + K
Sbjct: 58 EI--HFTKKETDIYRVNQSGDLANLSGLDWDDLSRLPNLFKLRQILYSKQY--------R 107
Query: 273 DFIAHLTNCSKLEAFGLDTNI 293
DF ++T KL D +I
Sbjct: 108 DFFGYVTKAGKLSGSKTDMSI 128
>pdb|3KT1|A Chain A, Crystal Structure Of Tpa1 From Saccharomyces Cerevisiae, A
Component Of The Messenger Ribonucleoprotein Complex
Length = 633
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 23/141 (16%)
Query: 162 ISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIG--FSLPNLEDL--SVRQNNYT 217
+ E+ GMF+ I++ + + L+ +E S P N G L N +DL +VR+ T
Sbjct: 2 LEEDKIKGMFNPKIWDKTFQD---GLKKEIEDSQPYNWGTIHELVN-DDLLRAVRKEIET 57
Query: 218 GSLPHSLSNASNLQLLDLS--LNHFSGQVKIDFNRLPNLFRLN---FGKNNLGTGAIGDL 272
H +++ ++ S L + SG D +RLPNLF+L + K
Sbjct: 58 EI--HFTKKETDIYRVNQSGDLANLSGLDWDDLSRLPNLFKLRQILYSKQY--------R 107
Query: 273 DFIAHLTNCSKLEAFGLDTNI 293
DF ++T KL D +I
Sbjct: 108 DFFGYVTKAGKLSGSKTDMSI 128
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 18/79 (22%)
Query: 419 LKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEG---NSVTGSIPLALNTLK------- 468
LKNL +D+S+N F +P + ++YL + +SVTG IP L L
Sbjct: 386 LKNLTNIDISKNSFH-SMPETCQWPEKMKYLNLSSTRIHSVTGCIPKTLEILDVSNNNLN 444
Query: 469 -------SIKELDLSRNNL 480
+KEL +SRN L
Sbjct: 445 LFSLNLPQLKELYISRNKL 463
>pdb|3RNQ|B Chain B, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Pd-L2
Length = 201
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 132 ALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENA-FSGMFHSSIFNISSLELIYPLENR 190
+ QN+ + N H R PE L Q+ S+ L + FS MF ++ + +I PL +R
Sbjct: 135 SWQNVSVPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDPL-SR 193
Query: 191 LEGSLP 196
+E +P
Sbjct: 194 MEPKVP 199
>pdb|3BP5|B Chain B, Crystal Structure Of The Mouse Pd-1 And Pd-L2 Complex
pdb|3BP6|B Chain B, Crystal Structure Of The Mouse Pd-1 Mutant And Pd-L2
Complex
Length = 202
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 132 ALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENA-FSGMFHSSIFNISSLELIYPLENR 190
+ QN+ + N H R PE L Q+ S+ L + FS MF ++ + +I PL +R
Sbjct: 136 SWQNVSVPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDPL-SR 194
Query: 191 LEGSLP 196
+E +P
Sbjct: 195 MEPKVP 200
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 2/127 (1%)
Query: 126 SIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIY 185
S + LQ +D++ + + + L LS L ++ N + + +SSL+ +
Sbjct: 49 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 108
Query: 186 PLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTG-SLPHSLSNASNLQLLDLSLNHFSGQV 244
LE L IG L L++L+V N LP SN +NL+ LDLS N
Sbjct: 109 ALETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 167
Query: 245 KIDFNRL 251
D L
Sbjct: 168 CTDLRVL 174
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 77 RVTKLVLRNQSIGGFLSP--YVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQ 134
+V ++ + N + FL P + +L L F++L S NL E E+ + G +LQ
Sbjct: 337 KVKRITVENSKV--FLVPCSFSQHLKSLEFLDL-SENLMVE---EYLKNSACKGAWPSLQ 390
Query: 135 NIDIAGNRLHS--RVPESLGQLRSLSFLDISENAFSGM 170
+ ++ N L S + E L L++L+ LDIS N F M
Sbjct: 391 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM 428
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 77 RVTKLVLRNQSIGGFLSP--YVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQ 134
+V ++ + N + FL P + +L L F++L S NL E E+ + G +LQ
Sbjct: 311 KVKRITVENSKV--FLVPCSFSQHLKSLEFLDL-SENLMVE---EYLKNSACKGAWPSLQ 364
Query: 135 NIDIAGNRLHS--RVPESLGQLRSLSFLDISENAFSGM 170
+ ++ N L S + E L L++L+ LDIS N F M
Sbjct: 365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM 402
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
Query: 131 SALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENR 190
S+ +++ N+L S +L L+ L +S+N + ++ L ++Y EN+
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 191 LEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSL-SNASNLQLLDLSLNHFSGQV-KIDF 248
L+ SLP + L L++L++ N S+P + ++LQ + L N + +ID+
Sbjct: 88 LQ-SLPNGVFDKLTQLKELAL-DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 145
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 1/125 (0%)
Query: 130 LSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLEN 189
L+ L +++ N+L + L L L ++ N + + +++ L+ +Y N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 190 RLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFN 249
+L+ SLP + L L++L + N + +NLQ L LS N F+
Sbjct: 118 QLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176
Query: 250 RLPNL 254
RL L
Sbjct: 177 RLGKL 181
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 1/125 (0%)
Query: 130 LSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLEN 189
L+ L +++ N+L + L L L ++ N + + +++ L+ +Y N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 190 RLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFN 249
+L+ SLP + L L++L + N + +NLQ L LS N F+
Sbjct: 118 QLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176
Query: 250 RLPNL 254
RL L
Sbjct: 177 RLGKL 181
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 421 NLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSR 477
NL LDLS N+ ++ S + LEY ++E N++ +L+ L +++ L+L R
Sbjct: 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 421 NLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSR 477
NL LDLS N+ ++ S + LEY ++E N++ +L+ L +++ L+L R
Sbjct: 254 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 310
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 421 NLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSR 477
NL LDLS N+ ++ S + LEY ++E N++ +L+ L +++ L+L R
Sbjct: 259 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 315
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 2/127 (1%)
Query: 126 SIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIY 185
S + LQ +D++ + + + L LS L ++ N + + +SSL+ +
Sbjct: 49 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 108
Query: 186 PLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTG-SLPHSLSNASNLQLLDLSLNHFSGQV 244
+E L IG L L++L+V N LP SN +NL+ LDLS N
Sbjct: 109 AVETNLASLENFPIGH-LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 167
Query: 245 KIDFNRL 251
D L
Sbjct: 168 CTDLRVL 174
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 2/127 (1%)
Query: 126 SIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIY 185
S + LQ +D++ + + + L LS L ++ N + + +SSL+ +
Sbjct: 48 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 107
Query: 186 PLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTG-SLPHSLSNASNLQLLDLSLNHFSGQV 244
+E L IG L L++L+V N LP SN +NL+ LDLS N
Sbjct: 108 AVETNLASLENFPIGH-LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 166
Query: 245 KIDFNRL 251
D L
Sbjct: 167 CTDLRVL 173
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 2/127 (1%)
Query: 126 SIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIY 185
S + LQ +D++ + + + L LS L ++ N + + +SSL+ +
Sbjct: 48 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 107
Query: 186 PLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTG-SLPHSLSNASNLQLLDLSLNHFSGQV 244
+E L IG L L++L+V N LP SN +NL+ LDLS N
Sbjct: 108 AVETNLASLENFPIGH-LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 166
Query: 245 KIDFNRL 251
D L
Sbjct: 167 CTDLRVL 173
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 2/127 (1%)
Query: 126 SIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIY 185
S + LQ +D++ + + + L LS L ++ N + + +SSL+ +
Sbjct: 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106
Query: 186 PLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTG-SLPHSLSNASNLQLLDLSLNHFSGQV 244
+E L IG L L++L+V N LP SN +NL+ LDLS N
Sbjct: 107 AVETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165
Query: 245 KIDFNRL 251
D L
Sbjct: 166 CTDLRVL 172
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,064,991
Number of Sequences: 62578
Number of extensions: 554220
Number of successful extensions: 1670
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 1155
Number of HSP's gapped (non-prelim): 323
length of query: 513
length of database: 14,973,337
effective HSP length: 103
effective length of query: 410
effective length of database: 8,527,803
effective search space: 3496399230
effective search space used: 3496399230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)