Query 041374
Match_columns 513
No_of_seqs 363 out of 4147
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 06:27:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041374.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041374hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.1E-56 6.7E-61 489.8 35.0 471 34-509 28-589 (968)
2 PLN00113 leucine-rich repeat r 100.0 7.8E-45 1.7E-49 399.6 26.8 420 76-506 140-610 (968)
3 KOG4194 Membrane glycoprotein 100.0 5.6E-37 1.2E-41 289.4 8.5 360 101-494 79-441 (873)
4 KOG0444 Cytoskeletal regulator 100.0 3.2E-35 6.9E-40 279.7 -2.7 393 76-510 7-410 (1255)
5 KOG4194 Membrane glycoprotein 100.0 3.5E-33 7.5E-38 263.9 6.8 355 132-512 79-437 (873)
6 KOG0472 Leucine-rich repeat pr 100.0 5.5E-36 1.2E-40 270.9 -12.1 382 94-504 85-541 (565)
7 KOG0444 Cytoskeletal regulator 100.0 1.1E-34 2.4E-39 276.0 -5.6 367 97-503 4-374 (1255)
8 KOG0472 Leucine-rich repeat pr 100.0 6.2E-33 1.3E-37 251.1 -11.8 362 92-481 106-541 (565)
9 KOG0618 Serine/threonine phosp 99.9 6.2E-30 1.3E-34 254.3 -4.4 386 77-504 46-465 (1081)
10 KOG0618 Serine/threonine phosp 99.9 5.4E-28 1.2E-32 240.6 -5.8 378 77-511 22-426 (1081)
11 PLN03210 Resistant to P. syrin 99.9 7.2E-23 1.6E-27 226.1 25.6 363 76-479 532-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 2.5E-22 5.3E-27 221.9 24.8 345 125-502 552-904 (1153)
13 KOG4237 Extracellular matrix p 99.9 1.5E-24 3.3E-29 196.6 -4.8 386 76-501 67-498 (498)
14 PRK15387 E3 ubiquitin-protein 99.9 7.2E-21 1.6E-25 195.7 18.5 267 133-492 203-469 (788)
15 PRK15387 E3 ubiquitin-protein 99.9 9.3E-21 2E-25 194.9 16.4 161 309-511 304-465 (788)
16 PRK15370 E3 ubiquitin-protein 99.8 8.1E-20 1.7E-24 189.2 17.8 182 131-344 178-359 (754)
17 KOG4237 Extracellular matrix p 99.8 8.4E-22 1.8E-26 179.0 -1.0 348 134-505 70-478 (498)
18 PRK15370 E3 ubiquitin-protein 99.8 3.5E-18 7.6E-23 177.1 14.0 246 156-481 179-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.8 2E-19 4.3E-24 173.3 2.9 285 183-503 2-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 5.6E-19 1.2E-23 170.1 0.7 59 104-168 2-64 (319)
21 KOG0617 Ras suppressor protein 99.7 1E-18 2.2E-23 141.1 -5.0 162 76-251 33-195 (264)
22 KOG0617 Ras suppressor protein 99.6 9.5E-18 2.1E-22 135.5 -5.8 99 363-465 94-193 (264)
23 PLN03150 hypothetical protein; 99.5 9.2E-14 2E-18 143.8 13.8 150 31-190 368-526 (623)
24 PLN03150 hypothetical protein; 99.2 3.3E-11 7.3E-16 124.9 9.2 111 398-508 420-532 (623)
25 KOG0532 Leucine-rich repeat (L 99.2 5.2E-13 1.1E-17 127.8 -4.8 170 285-481 78-247 (722)
26 KOG0532 Leucine-rich repeat (L 99.1 4.1E-12 8.8E-17 121.8 -1.3 195 251-479 74-271 (722)
27 KOG1909 Ran GTPase-activating 99.1 7.9E-12 1.7E-16 113.1 -1.9 253 202-480 28-310 (382)
28 COG4886 Leucine-rich repeat (L 99.1 2.1E-10 4.5E-15 113.8 7.1 135 367-508 159-294 (394)
29 PF14580 LRR_9: Leucine-rich r 99.0 1.9E-10 4E-15 97.7 4.9 57 203-259 87-147 (175)
30 COG4886 Leucine-rich repeat (L 99.0 2.2E-10 4.7E-15 113.6 6.2 197 81-300 98-295 (394)
31 KOG1909 Ran GTPase-activating 99.0 3.1E-11 6.7E-16 109.3 -0.3 248 175-456 26-310 (382)
32 PF14580 LRR_9: Leucine-rich r 99.0 1.3E-10 2.9E-15 98.6 3.3 61 130-192 41-101 (175)
33 KOG3207 Beta-tubulin folding c 99.0 3.7E-11 8E-16 111.8 -1.3 211 128-345 118-340 (505)
34 KOG1259 Nischarin, modulator o 99.0 2.2E-10 4.7E-15 101.7 3.5 188 91-298 205-415 (490)
35 KOG3207 Beta-tubulin folding c 99.0 6.9E-11 1.5E-15 110.1 0.3 187 151-344 117-314 (505)
36 KOG4658 Apoptotic ATPase [Sign 99.0 4.9E-10 1.1E-14 118.9 6.6 209 131-348 523-734 (889)
37 KOG4658 Apoptotic ATPase [Sign 98.9 1.5E-09 3.3E-14 115.2 5.4 128 100-238 523-652 (889)
38 KOG1259 Nischarin, modulator o 98.9 5.1E-10 1.1E-14 99.3 1.1 130 370-506 283-414 (490)
39 PF13855 LRR_8: Leucine rich r 98.9 1.7E-09 3.8E-14 75.4 3.1 61 420-480 1-61 (61)
40 PF13855 LRR_8: Leucine rich r 98.8 4.5E-09 9.7E-14 73.3 3.1 39 127-165 21-59 (61)
41 KOG0531 Protein phosphatase 1, 98.5 1.7E-08 3.6E-13 100.4 0.6 83 399-484 235-321 (414)
42 KOG0531 Protein phosphatase 1, 98.5 2E-08 4.3E-13 99.8 0.5 85 96-192 91-175 (414)
43 KOG4579 Leucine-rich repeat (L 98.5 1.3E-08 2.9E-13 79.9 -1.6 135 372-511 28-166 (177)
44 COG5238 RNA1 Ran GTPase-activa 98.4 2.1E-08 4.5E-13 88.1 -1.5 216 76-295 30-285 (388)
45 PF08263 LRRNT_2: Leucine rich 98.4 4E-07 8.6E-12 57.9 4.5 39 34-72 2-43 (43)
46 KOG2982 Uncharacterized conser 98.3 7.4E-08 1.6E-12 85.8 -1.5 87 202-293 69-157 (418)
47 KOG2120 SCF ubiquitin ligase, 98.3 1E-08 2.2E-13 91.2 -7.5 181 101-292 186-373 (419)
48 KOG1859 Leucine-rich repeat pr 98.3 5.5E-08 1.2E-12 96.6 -3.5 169 324-504 102-292 (1096)
49 KOG2120 SCF ubiquitin ligase, 98.2 8.1E-08 1.8E-12 85.5 -3.9 131 157-295 138-273 (419)
50 KOG2982 Uncharacterized conser 98.2 3.6E-07 7.8E-12 81.5 -0.2 41 226-266 222-263 (418)
51 KOG1859 Leucine-rich repeat pr 98.1 9.4E-08 2E-12 95.0 -6.2 127 132-265 165-292 (1096)
52 PF12799 LRR_4: Leucine Rich r 98.0 7.8E-06 1.7E-10 52.0 3.2 36 445-481 2-37 (44)
53 PF12799 LRR_4: Leucine Rich r 98.0 8.4E-06 1.8E-10 51.9 3.3 36 132-168 2-37 (44)
54 KOG4579 Leucine-rich repeat (L 98.0 6.1E-07 1.3E-11 70.7 -2.4 118 370-491 52-169 (177)
55 COG5238 RNA1 Ran GTPase-activa 97.9 2.6E-06 5.6E-11 75.2 0.7 78 227-304 29-114 (388)
56 KOG1644 U2-associated snRNP A' 97.8 4E-05 8.7E-10 64.9 5.9 105 131-262 42-150 (233)
57 PRK15386 type III secretion pr 97.7 9.3E-05 2E-09 71.2 7.8 120 326-478 47-187 (426)
58 PRK15386 type III secretion pr 97.7 9.9E-05 2.2E-09 71.0 7.7 131 309-455 54-188 (426)
59 KOG3665 ZYG-1-like serine/thre 97.6 1.3E-05 2.7E-10 83.6 0.3 160 76-239 60-231 (699)
60 KOG3665 ZYG-1-like serine/thre 97.6 1.7E-05 3.6E-10 82.7 0.9 141 330-487 121-269 (699)
61 KOG1644 U2-associated snRNP A' 97.3 0.00051 1.1E-08 58.4 5.3 124 373-500 21-149 (233)
62 PF13306 LRR_5: Leucine rich r 97.2 0.0011 2.3E-08 54.1 6.9 83 126-212 7-89 (129)
63 KOG2739 Leucine-rich acidic nu 97.0 0.00046 9.9E-09 61.2 2.5 59 131-191 43-103 (260)
64 KOG4341 F-box protein containi 96.9 4E-05 8.8E-10 72.0 -4.8 85 100-189 138-226 (483)
65 PF13306 LRR_5: Leucine rich r 96.8 0.0041 9E-08 50.6 6.5 119 367-492 8-126 (129)
66 KOG2123 Uncharacterized conser 96.6 8.6E-05 1.9E-09 66.1 -4.7 89 178-271 18-107 (388)
67 KOG4341 F-box protein containi 96.5 0.00018 3.8E-09 67.8 -3.4 270 228-501 138-436 (483)
68 KOG2739 Leucine-rich acidic nu 96.4 0.0017 3.6E-08 57.8 1.7 82 399-482 46-130 (260)
69 KOG2123 Uncharacterized conser 96.0 0.00033 7.2E-09 62.5 -4.4 86 397-486 20-106 (388)
70 PF00560 LRR_1: Leucine Rich R 95.7 0.0038 8.2E-08 32.9 0.4 12 470-481 2-13 (22)
71 PF00560 LRR_1: Leucine Rich R 95.4 0.0066 1.4E-07 31.9 0.7 19 446-465 2-20 (22)
72 KOG1947 Leucine rich repeat pr 94.3 0.0053 1.1E-07 62.7 -2.6 89 127-215 210-306 (482)
73 KOG4308 LRR-containing protein 93.9 0.00044 9.5E-09 69.1 -11.1 126 325-458 166-304 (478)
74 KOG4308 LRR-containing protein 93.6 0.00023 5E-09 71.1 -13.5 93 202-296 202-304 (478)
75 PF13504 LRR_7: Leucine rich r 92.7 0.07 1.5E-06 25.9 1.2 9 471-479 4-12 (17)
76 KOG0473 Leucine-rich repeat pr 92.6 0.0026 5.7E-08 55.4 -6.7 83 76-168 42-124 (326)
77 KOG3864 Uncharacterized conser 92.3 0.016 3.4E-07 49.7 -2.4 80 399-478 104-186 (221)
78 KOG3864 Uncharacterized conser 91.8 0.028 6.2E-07 48.1 -1.4 81 420-500 101-185 (221)
79 PF13516 LRR_6: Leucine Rich r 90.5 0.078 1.7E-06 28.4 0.0 15 444-458 2-16 (24)
80 PF13516 LRR_6: Leucine Rich r 90.3 0.072 1.6E-06 28.6 -0.2 20 468-487 2-21 (24)
81 smart00370 LRR Leucine-rich re 89.2 0.38 8.3E-06 26.3 2.2 14 468-481 2-15 (26)
82 smart00369 LRR_TYP Leucine-ric 89.2 0.38 8.3E-06 26.3 2.2 14 468-481 2-15 (26)
83 KOG0473 Leucine-rich repeat pr 89.0 0.0069 1.5E-07 52.9 -7.5 81 398-481 44-124 (326)
84 smart00370 LRR Leucine-rich re 88.9 0.42 9.1E-06 26.1 2.2 21 371-392 2-22 (26)
85 smart00369 LRR_TYP Leucine-ric 88.9 0.42 9.1E-06 26.1 2.2 21 371-392 2-22 (26)
86 KOG1947 Leucine rich repeat pr 86.8 0.36 7.8E-06 49.2 1.9 111 367-477 210-330 (482)
87 smart00365 LRR_SD22 Leucine-ri 75.0 2.5 5.4E-05 23.2 1.6 14 155-168 2-15 (26)
88 KOG4242 Predicted myosin-I-bin 71.4 26 0.00057 34.7 8.6 191 154-349 164-372 (553)
89 smart00364 LRR_BAC Leucine-ric 69.9 3.3 7.1E-05 22.7 1.3 17 469-486 3-19 (26)
90 smart00368 LRR_RI Leucine rich 69.6 3 6.5E-05 23.3 1.2 13 469-481 3-15 (28)
91 KOG3763 mRNA export factor TAP 50.1 7.4 0.00016 39.2 1.0 60 399-458 221-284 (585)
92 PF07172 GRP: Glycine rich pro 47.2 19 0.00041 27.2 2.5 21 6-26 3-23 (95)
93 KOG3763 mRNA export factor TAP 45.5 14 0.0003 37.4 2.0 67 418-484 216-286 (585)
94 smart00367 LRR_CC Leucine-rich 43.9 17 0.00038 19.6 1.5 11 444-454 2-12 (26)
95 KOG4242 Predicted myosin-I-bin 29.2 2.5E+02 0.0055 28.3 7.5 108 76-191 165-280 (553)
96 KOG1665 AFH1-interacting prote 23.6 1.2E+02 0.0025 26.9 3.8 13 421-433 217-229 (302)
97 TIGR00864 PCC polycystin catio 21.6 56 0.0012 40.2 2.0 32 426-457 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.1e-56 Score=489.84 Aligned_cols=471 Identities=31% Similarity=0.553 Sum_probs=285.7
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcccceeeCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCc
Q 041374 34 ETDRLAYLAIKSQLQDPLGVTKSWNNSISLCQWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLH 113 (513)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~~~~v~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~ 113 (513)
+.|+.++++||+++.+|.+++.+|....+||.|.||.|+. .++|+.|+++++.+.+.++..+..+++|++|+|++|.++
T Consensus 28 ~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~ 106 (968)
T PLN00113 28 AEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS 106 (968)
T ss_pred HHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC
Confidence 3788999999999988888899998888999999999975 368999999999888888878888888888888888877
Q ss_pred ccCCCCC------------------CCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccc
Q 041374 114 GEIPYEH------------------GQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSI 175 (513)
Q Consensus 114 ~~~~~~~------------------~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~ 175 (513)
+.+|..+ +.+|. +.+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+..|..+
T Consensus 107 ~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 184 (968)
T PLN00113 107 GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL 184 (968)
T ss_pred CcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh
Confidence 6666432 11111 234444444554454444455555555555555555555555555555
Q ss_pred cCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCc
Q 041374 176 FNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLF 255 (513)
Q Consensus 176 ~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 255 (513)
.++++|++|++++|.+.+.+|..+. .+++|++|++++|.+++.+|..++++++|++|++++|.+.+..|..++++++|+
T Consensus 185 ~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 263 (968)
T PLN00113 185 TNLTSLEFLTLASNQLVGQIPRELG-QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQ 263 (968)
T ss_pred hhCcCCCeeeccCCCCcCcCChHHc-CcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCC
Confidence 5555555555555555544454444 445555555555555444444444555555555555544444444444444444
Q ss_pred EEEcCCCCCCCCCCCCc------------------hhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccc
Q 041374 256 RLNFGKNNLGTGAIGDL------------------DFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLN 317 (513)
Q Consensus 256 ~L~L~~n~~~~~~~~~~------------------~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~ 317 (513)
+|++++|.+.+..+..+ ..+..+..+++|+.|++++|.+.+..|..+..++. ++.++++.|
T Consensus 264 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~L~~n 342 (968)
T PLN00113 264 YLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPR-LQVLQLWSN 342 (968)
T ss_pred EEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCC-CCEEECcCC
Confidence 44444444332111000 11122334444444555444444444444444443 444444444
Q ss_pred cceecCCccccCCCCCCEEeccCCcCccCC------------------------Ccccc---CCCCeEE-----eccCCc
Q 041374 318 QIYGTIPPEVKNLVNLNGFGLEYNQLTGPI------------------------PHAIG---ELRNLQL-----RGNVPS 365 (513)
Q Consensus 318 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~------------------------~~~~~---~l~~L~l-----~~~~~~ 365 (513)
.+.+.+|..+..+++|+.+++++|++.+.+ |..+. +++.|++ ++.+|.
T Consensus 343 ~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~ 422 (968)
T PLN00113 343 KFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS 422 (968)
T ss_pred CCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh
Confidence 444444444444444444444444444333 33222 2233332 223444
Q ss_pred cccCCCCCCEEecccCcCcccChHHHHhh----------------------hcccceEEccCCcCcccCCccccCCCCCC
Q 041374 366 SLGNCQNLMLLSVSNNKLTGALPPQILGI----------------------LTLSILLDLSGNLLTGSIPTEVGNLKNLV 423 (513)
Q Consensus 366 ~l~~~~~L~~L~ls~n~l~~~~p~~~~~~----------------------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~ 423 (513)
.+..+++|+.|++++|.+.+.+|..+... ...|+.|++++|++++..|..+..+++|+
T Consensus 423 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~ 502 (968)
T PLN00113 423 EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELM 502 (968)
T ss_pred hHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccC
Confidence 44444444445554444444333322211 12345666666777666777777778888
Q ss_pred EEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEccCCc
Q 041374 424 QLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETIND 502 (513)
Q Consensus 424 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n~ 502 (513)
.|++++|.+.+.+|..+..+++|++|+|++|.+++.+|..+..+++|+.||+++|++++.+|..+.+++.| ++++++|+
T Consensus 503 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~ 582 (968)
T PLN00113 503 QLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNH 582 (968)
T ss_pred EEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCc
Confidence 88888888887888888888888888888888888888888888888888888888888888888888888 88888888
Q ss_pred ccccCCC
Q 041374 503 FCHHKPK 509 (513)
Q Consensus 503 l~~~~p~ 509 (513)
++|.+|.
T Consensus 583 l~~~~p~ 589 (968)
T PLN00113 583 LHGSLPS 589 (968)
T ss_pred ceeeCCC
Confidence 8888885
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7.8e-45 Score=399.64 Aligned_cols=420 Identities=30% Similarity=0.473 Sum_probs=327.8
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCC-----------------CCCCcccCCCCCCCEEEe
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEH-----------------GQLPPSIGNLSALQNIDI 138 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-----------------~~l~~~~~~l~~L~~L~l 138 (513)
.+++.|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+ +.+|..++++++|++|++
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence 467788888888877777777778888888888877776666543 345777888889999999
Q ss_pred ecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccc
Q 041374 139 AGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTG 218 (513)
Q Consensus 139 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~ 218 (513)
++|.+.+.+|..++++++|++|++++|.+++..|..+.++++|+.|++++|.+.+.+|..+. .+++|++|++++|.+.+
T Consensus 220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~ 298 (968)
T PLN00113 220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSG 298 (968)
T ss_pred cCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHh-hccCcCEEECcCCeecc
Confidence 99988888888899999999999999999888888899999999999999998888888777 78889999999988888
Q ss_pred cCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccC---
Q 041374 219 SLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFG--- 295 (513)
Q Consensus 219 ~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~--- 295 (513)
.+|..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.
T Consensus 299 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p------~~l~~~~~L~~L~Ls~n~l~~~~ 372 (968)
T PLN00113 299 EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP------KNLGKHNNLTVLDLSTNNLTGEI 372 (968)
T ss_pred CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCC------hHHhCCCCCcEEECCCCeeEeeC
Confidence 888888888888888888888888888888888888888888888765332 33444455555555555544
Q ss_pred ---------------------CcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCcc---c
Q 041374 296 ---------------------GVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHA---I 351 (513)
Q Consensus 296 ---------------------~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~ 351 (513)
+..|..+..++. ++.++++.|.+++.+|..+..++.|+.+++++|.+++.++.. +
T Consensus 373 p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 451 (968)
T PLN00113 373 PEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS-LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDM 451 (968)
T ss_pred ChhHhCcCCCCEEECcCCEecccCCHHHhCCCC-CCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccC
Confidence 444444444444 666666666666666666666666666666666666655543 3
Q ss_pred cCCCCeEEec-----cCCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEe
Q 041374 352 GELRNLQLRG-----NVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLD 426 (513)
Q Consensus 352 ~~l~~L~l~~-----~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 426 (513)
.+++.|++++ .+|..+ ..++|+.|++++|++.+.+|..+.... .|+.|++++|++.+.+|..+..+++|++|+
T Consensus 452 ~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 529 (968)
T PLN00113 452 PSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLS-ELMQLKLSENKLSGEIPDELSSCKKLVSLD 529 (968)
T ss_pred CCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhh-ccCEEECcCCcceeeCChHHcCccCCCEEE
Confidence 4455555544 244433 347889999999999888887766554 459999999999999999999999999999
Q ss_pred CCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEccCCc-cc
Q 041374 427 LSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETIND-FC 504 (513)
Q Consensus 427 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n~-l~ 504 (513)
+++|.+++.+|..+..+++|+.|+|++|++.+.+|..+..+++|+.+++++|++.|.+|.. ..+..+ ...+.+|+ ++
T Consensus 530 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc 608 (968)
T PLN00113 530 LSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDLC 608 (968)
T ss_pred CCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999965 223333 55566765 55
Q ss_pred cc
Q 041374 505 HH 506 (513)
Q Consensus 505 ~~ 506 (513)
|.
T Consensus 609 ~~ 610 (968)
T PLN00113 609 GG 610 (968)
T ss_pred CC
Confidence 53
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=5.6e-37 Score=289.37 Aligned_cols=360 Identities=22% Similarity=0.236 Sum_probs=257.6
Q ss_pred CCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCC
Q 041374 101 FLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISS 180 (513)
Q Consensus 101 ~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 180 (513)
.-+.|++++|.+.... +..|.++++|+.+++.+|.++. +|..-....+|+.|+|.+|.|+.+..+.+..++.
T Consensus 79 ~t~~LdlsnNkl~~id-------~~~f~nl~nLq~v~l~~N~Lt~-IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~a 150 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHID-------FEFFYNLPNLQEVNLNKNELTR-IPRFGHESGHLEKLDLRHNLISSVTSEELSALPA 150 (873)
T ss_pred ceeeeeccccccccCc-------HHHHhcCCcceeeeeccchhhh-cccccccccceeEEeeeccccccccHHHHHhHhh
Confidence 3455777777666322 2245666777777777776654 5554444455777777777777666667777777
Q ss_pred CcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcC
Q 041374 181 LELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFG 260 (513)
Q Consensus 181 L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 260 (513)
|+.|+++.|.+. .+|...+..-.++++|+|++|+|+..-...|..+.+|.+|.|+.|+++...+..|..+++|+.|+|.
T Consensus 151 lrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLn 229 (873)
T KOG4194|consen 151 LRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLN 229 (873)
T ss_pred hhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcc
Confidence 777777777776 6665555445677777777777775555667777777777777777776666667777777777777
Q ss_pred CCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccC
Q 041374 261 KNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEY 340 (513)
Q Consensus 261 ~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 340 (513)
.|++..... ..+..+++|+.|.+..|.+...-...|..+.. ++.+++..|++...--.++..++.|+.|++++
T Consensus 230 rN~irive~------ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~k-me~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~ 302 (873)
T KOG4194|consen 230 RNRIRIVEG------LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEK-MEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY 302 (873)
T ss_pred ccceeeehh------hhhcCchhhhhhhhhhcCcccccCcceeeecc-cceeecccchhhhhhcccccccchhhhhccch
Confidence 777654321 34566677777777777777666666666666 77788888877766667777888888888888
Q ss_pred CcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCC
Q 041374 341 NQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLK 420 (513)
Q Consensus 341 n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~ 420 (513)
|.+....+ .+|..+++|+.|+|++|.++ .+++.-+.....|++|++++|+++..-...|..++
T Consensus 303 NaI~rih~----------------d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ls 365 (873)
T KOG4194|consen 303 NAIQRIHI----------------DSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLS 365 (873)
T ss_pred hhhheeec----------------chhhhcccceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhh
Confidence 87774333 34566788888888888887 67777677777778888888888755555677888
Q ss_pred CCCEEeCCCCccCccCC---ccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCc
Q 041374 421 NLVQLDLSENHFSIEIP---VSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN 494 (513)
Q Consensus 421 ~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l 494 (513)
+|++|||++|.+...+. ..|.++++|++|++.+|+++.....+|.+++.|+.|||.+|.|...-|.+|+.+ .|
T Consensus 366 sL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~L 441 (873)
T KOG4194|consen 366 SLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-EL 441 (873)
T ss_pred hhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hh
Confidence 88888888888776554 346778888888888888886667788888888888888888887777787766 44
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=100.00 E-value=3.2e-35 Score=279.69 Aligned_cols=393 Identities=23% Similarity=0.339 Sum_probs=322.8
Q ss_pred CcEEEEEcCCCCCc-cccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCC
Q 041374 76 RRVTKLVLRNQSIG-GFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQL 154 (513)
Q Consensus 76 ~~v~~L~l~~~~~~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l 154 (513)
.-|+.+|+++|++. +..|.....|+.++.|.|...++. .+|+.++.+.+|+.|.++.|++.. +-..++.+
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~--------~vPeEL~~lqkLEHLs~~HN~L~~-vhGELs~L 77 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE--------QVPEELSRLQKLEHLSMAHNQLIS-VHGELSDL 77 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh--------hChHHHHHHhhhhhhhhhhhhhHh-hhhhhccc
Confidence 45899999999998 568999999999999999999887 889999999999999999999986 44568899
Q ss_pred CCCCEEEcccccCC-ccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcc-cccCCCCCCe
Q 041374 155 RSLSFLDISENAFS-GMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPH-SLSNASNLQL 232 (513)
Q Consensus 155 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~ 232 (513)
+.||.+++..|.+. ..+|..+..+..|+.|++++|++. ..|..+- ..+++-.|+|++|+|. .+|. -+.++..|-.
T Consensus 78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE-~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLE-YAKNSIVLNLSYNNIE-TIPNSLFINLTDLLF 154 (1255)
T ss_pred hhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhh-hhcCcEEEEcccCccc-cCCchHHHhhHhHhh
Confidence 99999999999884 457889999999999999999999 8898876 6788999999999998 5665 4678999999
Q ss_pred eeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccc-cCCcCchhhhccccccce
Q 041374 233 LDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNI-FGGVLPLSIANLSSTIIL 311 (513)
Q Consensus 233 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~l~~ 311 (513)
|||++|++. .+|..+..+..|++|.|++|.+.. ..+..+..+++|+.|.+++.. ....+|.++..+.+ +..
T Consensus 155 LDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~h------fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~N-L~d 226 (1255)
T KOG0444|consen 155 LDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNH------FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHN-LRD 226 (1255)
T ss_pred hccccchhh-hcCHHHHHHhhhhhhhcCCChhhH------HHHhcCccchhhhhhhcccccchhhcCCCchhhhhh-hhh
Confidence 999999997 567778899999999999998754 334567778888999998754 33457777777776 888
Q ss_pred EEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHH
Q 041374 312 FTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQI 391 (513)
Q Consensus 312 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~ 391 (513)
++++.|.+. .+|+.+..+++|+.|++++|+++..- -......+|++|++|+|+++ .+|..+
T Consensus 227 vDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~-----------------~~~~~W~~lEtLNlSrNQLt-~LP~av 287 (1255)
T KOG0444|consen 227 VDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELN-----------------MTEGEWENLETLNLSRNQLT-VLPDAV 287 (1255)
T ss_pred ccccccCCC-cchHHHhhhhhhheeccCcCceeeee-----------------ccHHHHhhhhhhccccchhc-cchHHH
Confidence 899988887 67888888999999999999888321 11223368999999999998 899998
Q ss_pred HhhhcccceEEccCCcCc-ccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCC
Q 041374 392 LGILTLSILLDLSGNLLT-GSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSI 470 (513)
Q Consensus 392 ~~~~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 470 (513)
+....+ +.|.+.+|+++ +-+|..++.+.+|+.+..++|.+. -.|++++.|..|+.|.|+.|++. .+|+++.-++.|
T Consensus 288 cKL~kL-~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l 364 (1255)
T KOG0444|consen 288 CKLTKL-TKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDL 364 (1255)
T ss_pred hhhHHH-HHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCc
Confidence 877666 88999999875 247889999999999999999887 78999999999999999999998 899999999999
Q ss_pred CEEECCCCCCCcccchhhhcccCc---eEEccCC---cccccCCCC
Q 041374 471 KELDLSRNNLSGHIPEFLENLSFN---KMNETIN---DFCHHKPKV 510 (513)
Q Consensus 471 ~~L~l~~n~l~~~~p~~l~~l~~l---~l~l~~n---~l~~~~p~~ 510 (513)
+.||+++|+-.--+|.-=..-+.+ .+|.|=- ++.|+.|..
T Consensus 365 ~vLDlreNpnLVMPPKP~da~~~lefYNIDFSLq~QlrlAG~~pas 410 (1255)
T KOG0444|consen 365 KVLDLRENPNLVMPPKPNDARKKLEFYNIDFSLQHQLRLAGQMPAS 410 (1255)
T ss_pred ceeeccCCcCccCCCCcchhhhcceeeecceehhhHHhhccCCccc
Confidence 999999998653333322222344 3443321 577777754
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.98 E-value=3.5e-33 Score=263.86 Aligned_cols=355 Identities=22% Similarity=0.218 Sum_probs=241.4
Q ss_pred CCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEc
Q 041374 132 ALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSV 211 (513)
Q Consensus 132 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l 211 (513)
.-++||+++|.+...-+..|.++++|+.+++.+|.++ .+|.......+|+.|++.+|.|. ++..+-...++.|+.|||
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDL 156 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhh
Confidence 4455777777776666666667777777777777665 33444444455666666666665 332222224556666666
Q ss_pred cCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccc
Q 041374 212 RQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDT 291 (513)
Q Consensus 212 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 291 (513)
+.|.++..--..+..-.++++|+|++|.|+..-...|..+.+|.+|.|+.|+++..+. ..++++++|+.|++..
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~------r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQ------RSFKRLPKLESLDLNR 230 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCH------HHhhhcchhhhhhccc
Confidence 6666663222334444556666666666665555556666666666666666665432 3445566666666666
Q ss_pred cccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCC
Q 041374 292 NIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQ 371 (513)
Q Consensus 292 n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~ 371 (513)
|.+...--..|.++++ ++.+.+..|.++..-...|..+.++++|+++.|++...- ..|+.+++
T Consensus 231 N~irive~ltFqgL~S-l~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn----------------~g~lfgLt 293 (873)
T KOG4194|consen 231 NRIRIVEGLTFQGLPS-LQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVN----------------EGWLFGLT 293 (873)
T ss_pred cceeeehhhhhcCchh-hhhhhhhhcCcccccCcceeeecccceeecccchhhhhh----------------cccccccc
Confidence 6655433344455554 555666666655554555555666666666666655322 23456678
Q ss_pred CCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeC
Q 041374 372 NLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYM 451 (513)
Q Consensus 372 ~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 451 (513)
.|+.|++|.|.|. .+...-+...+.|++|++++|+++...+..+..+.+|++|+|++|++...--..|..+++|++|||
T Consensus 294 ~L~~L~lS~NaI~-rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdL 372 (873)
T KOG4194|consen 294 SLEQLDLSYNAIQ-RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDL 372 (873)
T ss_pred hhhhhccchhhhh-eeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcC
Confidence 9999999999998 444444556667799999999999777888999999999999999998655668899999999999
Q ss_pred CCCcccccc---cccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEccCCcccccCCCCCc
Q 041374 452 EGNSVTGSI---PLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETINDFCHHKPKVFA 512 (513)
Q Consensus 452 ~~n~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n~l~~~~p~~~~ 512 (513)
++|.+...+ ...|..+++|+.|++.+|++....-.+|.+++.| .+||.+|.|-.--|.++.
T Consensus 373 r~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe 437 (873)
T KOG4194|consen 373 RSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFE 437 (873)
T ss_pred cCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccc
Confidence 999988544 3457789999999999999984444599999999 999999998876666654
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.98 E-value=5.5e-36 Score=270.86 Aligned_cols=382 Identities=28% Similarity=0.409 Sum_probs=203.9
Q ss_pred ccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcc
Q 041374 94 PYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHS 173 (513)
Q Consensus 94 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~ 173 (513)
++++++..++.++.+.|++. ++|..++.+..|+.++++.|++.. +|++++.+..|+.++..+|.++. .|+
T Consensus 85 ~aig~l~~l~~l~vs~n~ls--------~lp~~i~s~~~l~~l~~s~n~~~e-l~~~i~~~~~l~dl~~~~N~i~s-lp~ 154 (565)
T KOG0472|consen 85 AAIGELEALKSLNVSHNKLS--------ELPEQIGSLISLVKLDCSSNELKE-LPDSIGRLLDLEDLDATNNQISS-LPE 154 (565)
T ss_pred HHHHHHHHHHHhhcccchHh--------hccHHHhhhhhhhhhhccccceee-cCchHHHHhhhhhhhcccccccc-Cch
Confidence 33444444444444444443 444444444444444444444443 34444444444444444444442 234
Q ss_pred cccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCC
Q 041374 174 SIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPN 253 (513)
Q Consensus 174 ~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 253 (513)
+++++..+..+++.+|++. .+|+... .++.|++++...|.++ .+|..++.+.+|..|++..|++. ..| .|..+..
T Consensus 155 ~~~~~~~l~~l~~~~n~l~-~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~ 229 (565)
T KOG0472|consen 155 DMVNLSKLSKLDLEGNKLK-ALPENHI-AMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSL 229 (565)
T ss_pred HHHHHHHHHHhhccccchh-hCCHHHH-HHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHH
Confidence 4444444444444444444 3333333 2444555554444444 44444555555555555555544 233 4444445
Q ss_pred CcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCC
Q 041374 254 LFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNL 333 (513)
Q Consensus 254 L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L 333 (513)
|++|+++.|++...+ .+..++++++..||+..|++. ..|..+..+.+ +.++|+++|.++ .+|..++++ .|
T Consensus 230 L~Elh~g~N~i~~lp------ae~~~~L~~l~vLDLRdNklk-e~Pde~clLrs-L~rLDlSNN~is-~Lp~sLgnl-hL 299 (565)
T KOG0472|consen 230 LKELHVGENQIEMLP------AEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRS-LERLDLSNNDIS-SLPYSLGNL-HL 299 (565)
T ss_pred HHHHHhcccHHHhhH------HHHhcccccceeeeccccccc-cCchHHHHhhh-hhhhcccCCccc-cCCcccccc-ee
Confidence 555555554443311 122334455555555555554 23444444443 555555555554 344445555 55
Q ss_pred CEEeccCCcCccCCCcc--------cc------------------------------------CCCCeEEecc----CCc
Q 041374 334 NGFGLEYNQLTGPIPHA--------IG------------------------------------ELRNLQLRGN----VPS 365 (513)
Q Consensus 334 ~~L~l~~n~~~~~~~~~--------~~------------------------------------~l~~L~l~~~----~~~ 365 (513)
+.|.+.||.+.....+. +. ..+.|++++. +|.
T Consensus 300 ~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPd 379 (565)
T KOG0472|consen 300 KFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPD 379 (565)
T ss_pred eehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCH
Confidence 55555555442100000 00 0111111111 222
Q ss_pred ccc---CCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccC
Q 041374 366 SLG---NCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSA 442 (513)
Q Consensus 366 ~l~---~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 442 (513)
... .-.-.++.+++.|++. ++|..+.........+.+++|.++ -+|..++.+++|..|++++|.+. .+|..++.
T Consensus 380 EVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~ 456 (565)
T KOG0472|consen 380 EVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGS 456 (565)
T ss_pred HHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhh
Confidence 111 1122566777777776 677666555555556667777665 56666777777777777777666 67777777
Q ss_pred CCCCCEEeCCCCccc-----------------------ccccccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEc
Q 041374 443 CTTLEYLYMEGNSVT-----------------------GSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNE 498 (513)
Q Consensus 443 l~~L~~L~L~~n~l~-----------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l 498 (513)
+-.|+.|+++.|++. ...|..+..+.+|.+||+.+|.+. .+|..+++++.+ ++++
T Consensus 457 lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL 535 (565)
T KOG0472|consen 457 LVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLEL 535 (565)
T ss_pred hhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEe
Confidence 777777777766543 334445778889999999999998 799999999999 9999
Q ss_pred cCCccc
Q 041374 499 TINDFC 504 (513)
Q Consensus 499 ~~n~l~ 504 (513)
++|+|.
T Consensus 536 ~gNpfr 541 (565)
T KOG0472|consen 536 DGNPFR 541 (565)
T ss_pred cCCccC
Confidence 999998
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.1e-34 Score=275.99 Aligned_cols=367 Identities=26% Similarity=0.380 Sum_probs=312.7
Q ss_pred cCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCccccc
Q 041374 97 GNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIF 176 (513)
Q Consensus 97 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~ 176 (513)
+-++..|-.|+++|.++|. .+|..+..+++++.|.+....+.. +|+.++.+.+|++|.+++|++... ...+.
T Consensus 4 gVLpFVrGvDfsgNDFsg~------~FP~~v~qMt~~~WLkLnrt~L~~-vPeEL~~lqkLEHLs~~HN~L~~v-hGELs 75 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGD------RFPHDVEQMTQMTWLKLNRTKLEQ-VPEELSRLQKLEHLSMAHNQLISV-HGELS 75 (1255)
T ss_pred cccceeecccccCCcCCCC------cCchhHHHhhheeEEEechhhhhh-ChHHHHHHhhhhhhhhhhhhhHhh-hhhhc
Confidence 4577888899999999976 678889999999999999888865 899999999999999999998744 45678
Q ss_pred CCCCCcEEeCCCCcCc-ccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCc
Q 041374 177 NISSLELIYPLENRLE-GSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLF 255 (513)
Q Consensus 177 ~l~~L~~L~l~~n~l~-~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 255 (513)
.++.|+.+.+..|++. ..+|..++ .+..|..|+|++|+++ ..|..+..-+++-.|+|++|+|..+....|.+++.|-
T Consensus 76 ~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLL 153 (1255)
T KOG0444|consen 76 DLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLL 153 (1255)
T ss_pred cchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHh
Confidence 8999999999999886 46899999 9999999999999999 8899999999999999999999866556678999999
Q ss_pred EEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccce-ecCCccccCCCCCC
Q 041374 256 RLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIY-GTIPPEVKNLVNLN 334 (513)
Q Consensus 256 ~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~~L~ 334 (513)
.|+|++|++... |..+..+..|++|.+++|.+...-...+..+.+ ++.+.+++.+-+ ..+|..+..+.+|.
T Consensus 154 fLDLS~NrLe~L-------PPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmts-L~vLhms~TqRTl~N~Ptsld~l~NL~ 225 (1255)
T KOG0444|consen 154 FLDLSNNRLEML-------PPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTS-LSVLHMSNTQRTLDNIPTSLDDLHNLR 225 (1255)
T ss_pred hhccccchhhhc-------CHHHHHHhhhhhhhcCCChhhHHHHhcCccchh-hhhhhcccccchhhcCCCchhhhhhhh
Confidence 999999998763 355667788999999999765332233334443 777777776544 56888899999999
Q ss_pred EEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCc
Q 041374 335 GFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPT 414 (513)
Q Consensus 335 ~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~ 414 (513)
.+|++.|++. .+|..+.++++|+.|+||+|+++ ++.........+ +.|+++.|+++ .+|.
T Consensus 226 dvDlS~N~Lp-----------------~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~l-EtLNlSrNQLt-~LP~ 285 (1255)
T KOG0444|consen 226 DVDLSENNLP-----------------IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENL-ETLNLSRNQLT-VLPD 285 (1255)
T ss_pred hccccccCCC-----------------cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhh-hhhccccchhc-cchH
Confidence 9999999998 34555666789999999999997 555555444444 99999999999 8999
Q ss_pred cccCCCCCCEEeCCCCccCc-cCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccC
Q 041374 415 EVGNLKNLVQLDLSENHFSI-EIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSF 493 (513)
Q Consensus 415 ~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 493 (513)
.++.+++|+.|...+|++.- -+|..++.+.+|+.+..++|++. .+|++++.|..|+.|.|++|++- .+|+.+.-|+.
T Consensus 286 avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~ 363 (1255)
T KOG0444|consen 286 AVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPD 363 (1255)
T ss_pred HHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCC
Confidence 99999999999999998763 47999999999999999999997 89999999999999999999987 69999999999
Q ss_pred c-eEEccCCcc
Q 041374 494 N-KMNETINDF 503 (513)
Q Consensus 494 l-~l~l~~n~l 503 (513)
+ .+|+..|+-
T Consensus 364 l~vLDlreNpn 374 (1255)
T KOG0444|consen 364 LKVLDLRENPN 374 (1255)
T ss_pred cceeeccCCcC
Confidence 9 999999963
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.96 E-value=6.2e-33 Score=251.14 Aligned_cols=362 Identities=29% Similarity=0.419 Sum_probs=241.4
Q ss_pred cCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccC
Q 041374 92 LSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMF 171 (513)
Q Consensus 92 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~ 171 (513)
+|+.++.+..++.+++++|.+. ++|+.++.+..|+.++..+|+++. .|..+..+.+|..+++.+|++....
T Consensus 106 lp~~i~s~~~l~~l~~s~n~~~--------el~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~~l~ 176 (565)
T KOG0472|consen 106 LPEQIGSLISLVKLDCSSNELK--------ELPDSIGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLKALP 176 (565)
T ss_pred ccHHHhhhhhhhhhhcccccee--------ecCchHHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccchhhCC
Confidence 6778888999999999999887 677778888888888888888776 6666777777777777777776554
Q ss_pred cccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCC
Q 041374 172 HSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRL 251 (513)
Q Consensus 172 ~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l 251 (513)
|..+. ++.|+.++...|-++ .+|+.++ .+.+|+.|++.+|++. .+| .|..+..|+++.+..|++.-........+
T Consensus 177 ~~~i~-m~~L~~ld~~~N~L~-tlP~~lg-~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L 251 (565)
T KOG0472|consen 177 ENHIA-MKRLKHLDCNSNLLE-TLPPELG-GLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHL 251 (565)
T ss_pred HHHHH-HHHHHhcccchhhhh-cCChhhc-chhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhccc
Confidence 44444 777777777777666 6777776 6777777777777766 455 45555555555555555542222223355
Q ss_pred CCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEecccccee----------
Q 041374 252 PNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYG---------- 321 (513)
Q Consensus 252 ~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~---------- 321 (513)
+++..||+.+|++...+ ..+.-+++|+.||+++|.+++ .|..++++ .++.+.+.+|.+..
T Consensus 252 ~~l~vLDLRdNklke~P-------de~clLrsL~rLDlSNN~is~-Lp~sLgnl--hL~~L~leGNPlrTiRr~ii~~gT 321 (565)
T KOG0472|consen 252 NSLLVLDLRDNKLKEVP-------DEICLLRSLERLDLSNNDISS-LPYSLGNL--HLKFLALEGNPLRTIRREIISKGT 321 (565)
T ss_pred ccceeeeccccccccCc-------hHHHHhhhhhhhcccCCcccc-CCcccccc--eeeehhhcCCchHHHHHHHHcccH
Confidence 55555555555554422 223333445555555555542 23333433 13333333333210
Q ss_pred ---------------------------cCC----ccccCCCCCCEEeccCCcCcc-------------------------
Q 041374 322 ---------------------------TIP----PEVKNLVNLNGFGLEYNQLTG------------------------- 345 (513)
Q Consensus 322 ---------------------------~~~----~~~~~~~~L~~L~l~~n~~~~------------------------- 345 (513)
+.+ +....+.+.+.|++++-+++.
T Consensus 322 ~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~ 401 (565)
T KOG0472|consen 322 QEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC 401 (565)
T ss_pred HHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh
Confidence 000 011122334455555544442
Q ss_pred CCCccccCCCCeE----Eecc----CCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCcccc
Q 041374 346 PIPHAIGELRNLQ----LRGN----VPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVG 417 (513)
Q Consensus 346 ~~~~~~~~l~~L~----l~~~----~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~ 417 (513)
++|..+..++++. ++.+ +|..++.+++|..|++++|.+. ++|...+.... |+.|+++.|+|. .+|..+.
T Consensus 402 elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~-Lq~LnlS~NrFr-~lP~~~y 478 (565)
T KOG0472|consen 402 ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVR-LQTLNLSFNRFR-MLPECLY 478 (565)
T ss_pred hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhh-hheecccccccc-cchHHHh
Confidence 3333332222211 2222 4556678999999999999887 89999888777 599999999998 7888888
Q ss_pred CCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCC
Q 041374 418 NLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLS 481 (513)
Q Consensus 418 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 481 (513)
....++.+-.++|++....|..+.+|.+|..||+.+|.+. .+|..+++|++|+.|++.+|+|.
T Consensus 479 ~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 479 ELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 8888888888889998666667999999999999999998 89999999999999999999998
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.95 E-value=6.2e-30 Score=254.30 Aligned_cols=386 Identities=27% Similarity=0.369 Sum_probs=225.8
Q ss_pred cEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCC
Q 041374 77 RVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRS 156 (513)
Q Consensus 77 ~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 156 (513)
++..|++++|.+.. .|..+..+.+|+.|+++.|.|. .+|.+..++.+|++++|.+|.+.. .|.++..+++
T Consensus 46 ~L~~l~lsnn~~~~-fp~~it~l~~L~~ln~s~n~i~--------~vp~s~~~~~~l~~lnL~~n~l~~-lP~~~~~lkn 115 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISS-FPIQITLLSHLRQLNLSRNYIR--------SVPSSCSNMRNLQYLNLKNNRLQS-LPASISELKN 115 (1081)
T ss_pred eeEEeecccccccc-CCchhhhHHHHhhcccchhhHh--------hCchhhhhhhcchhheeccchhhc-CchhHHhhhc
Confidence 48889999888764 6777888899999999999887 677788899999999998888765 8889999999
Q ss_pred CCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCc
Q 041374 157 LSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLS 236 (513)
Q Consensus 157 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 236 (513)
|++|++++|.+. .+|..+..++.+..+..++|.....++. ..++.+++..|.+.+.++..+..++. .|++.
T Consensus 116 l~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~------~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr 186 (1081)
T KOG0618|consen 116 LQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQ------TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLR 186 (1081)
T ss_pred ccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhcc------ccchhhhhhhhhcccchhcchhhhhe--eeecc
Confidence 999999999876 4567777777777777777722212221 12666777777777666666666655 67777
Q ss_pred cccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEecc
Q 041374 237 LNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGL 316 (513)
Q Consensus 237 ~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~ 316 (513)
+|.+. ...+..+++|+.+....|+++.... .-++++.|+.+.|.+....+ ...+..+++++++.
T Consensus 187 ~N~~~---~~dls~~~~l~~l~c~rn~ls~l~~----------~g~~l~~L~a~~n~l~~~~~---~p~p~nl~~~dis~ 250 (1081)
T KOG0618|consen 187 YNEME---VLDLSNLANLEVLHCERNQLSELEI----------SGPSLTALYADHNPLTTLDV---HPVPLNLQYLDISH 250 (1081)
T ss_pred cchhh---hhhhhhccchhhhhhhhcccceEEe----------cCcchheeeeccCcceeecc---ccccccceeeecch
Confidence 77765 2234555666666666665543211 11344555555554442211 12223355555555
Q ss_pred ccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCC---eEEec----cCCccccCCCCCCEEecccCcCcccChH
Q 041374 317 NQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRN---LQLRG----NVPSSLGNCQNLMLLSVSNNKLTGALPP 389 (513)
Q Consensus 317 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~---L~l~~----~~~~~l~~~~~L~~L~ls~n~l~~~~p~ 389 (513)
+++++ +|.++..+.+|+.++..+|.++ .+|..+...++ |.... .+|+.....+.|++|++..|++. ..|.
T Consensus 251 n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~ 327 (1081)
T KOG0618|consen 251 NNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPD 327 (1081)
T ss_pred hhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc-ccch
Confidence 55553 3355555555555555555553 33333322222 22111 13444444555555665555554 4443
Q ss_pred HHHhhhc-------------------------ccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCc-cccCC
Q 041374 390 QILGILT-------------------------LSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPV-SLSAC 443 (513)
Q Consensus 390 ~~~~~~~-------------------------~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l 443 (513)
.++.... .|+.|.+.+|.+++...+.+.+++.|+.|+|++|++. .+|. .+.++
T Consensus 328 ~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kl 406 (1081)
T KOG0618|consen 328 NFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKL 406 (1081)
T ss_pred HHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhch
Confidence 3221111 1234555555555555555555666666666666665 3333 34555
Q ss_pred CCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEccCCccc
Q 041374 444 TTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETINDFC 504 (513)
Q Consensus 444 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n~l~ 504 (513)
..|+.|+||+|+++ .+|..+..+..|++|...+|++. ..| .+..++.+ .+|+|.|+|+
T Consensus 407 e~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 407 EELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred HHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhh
Confidence 56666666666665 44555555555555555555544 334 44444555 5555555443
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.92 E-value=5.4e-28 Score=240.60 Aligned_cols=378 Identities=27% Similarity=0.377 Sum_probs=269.1
Q ss_pred cEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCC
Q 041374 77 RVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRS 156 (513)
Q Consensus 77 ~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 156 (513)
++..++++.|.+-...-+.+.+.-+|+.|++++|.+. .+|..+..+.+|+.|+++.|.+.. .|.+..++.+
T Consensus 22 ~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~--------~fp~~it~l~~L~~ln~s~n~i~~-vp~s~~~~~~ 92 (1081)
T KOG0618|consen 22 ALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS--------SFPIQITLLSHLRQLNLSRNYIRS-VPSSCSNMRN 92 (1081)
T ss_pred HHHhhhccccccccCchHHhhheeeeEEeeccccccc--------cCCchhhhHHHHhhcccchhhHhh-Cchhhhhhhc
Confidence 3666666666654433334444455888888888776 667777778888888888887765 6677778888
Q ss_pred CCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCc
Q 041374 157 LSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLS 236 (513)
Q Consensus 157 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 236 (513)
|+++.|.+|..+ ..|..+..+.+|++|+++.|.+. .+|.-+. .+..++.+..++|.-... ++... ++.+++.
T Consensus 93 l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~-~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~ 164 (1081)
T KOG0618|consen 93 LQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIE-VLTAEEELAASNNEKIQR----LGQTS-IKKLDLR 164 (1081)
T ss_pred chhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHH-hhhHHHHHhhhcchhhhh----hcccc-chhhhhh
Confidence 888888887765 55777888888888888888887 7777666 667777777777722212 22222 7777788
Q ss_pred cccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEecc
Q 041374 237 LNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGL 316 (513)
Q Consensus 237 ~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~ 316 (513)
.|.+.+.++.++..+.. .|+|..|.+.. ..+..+.+|+.+....|.+....- .-..++.+....
T Consensus 165 ~n~l~~~~~~~i~~l~~--~ldLr~N~~~~---------~dls~~~~l~~l~c~rn~ls~l~~-----~g~~l~~L~a~~ 228 (1081)
T KOG0618|consen 165 LNVLGGSFLIDIYNLTH--QLDLRYNEMEV---------LDLSNLANLEVLHCERNQLSELEI-----SGPSLTALYADH 228 (1081)
T ss_pred hhhcccchhcchhhhhe--eeecccchhhh---------hhhhhccchhhhhhhhcccceEEe-----cCcchheeeecc
Confidence 88877777777777766 78888887753 456777788888877776553211 111266677777
Q ss_pred ccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhhc
Q 041374 317 NQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILT 396 (513)
Q Consensus 317 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~ 396 (513)
|.+....+. ....+|++++++.|+++ ++|.|++.|.+|+.++..+|.++ .+|..++....
T Consensus 229 n~l~~~~~~--p~p~nl~~~dis~n~l~-----------------~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~ 288 (1081)
T KOG0618|consen 229 NPLTTLDVH--PVPLNLQYLDISHNNLS-----------------NLPEWIGACANLEALNANHNRLV-ALPLRISRITS 288 (1081)
T ss_pred Ccceeeccc--cccccceeeecchhhhh-----------------cchHHHHhcccceEecccchhHH-hhHHHHhhhhh
Confidence 766633222 22356788888888887 56677788889999999999886 88888877666
Q ss_pred ccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccc--------------------------cCCCCCCEEe
Q 041374 397 LSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSL--------------------------SACTTLEYLY 450 (513)
Q Consensus 397 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--------------------------~~l~~L~~L~ 450 (513)
+ +.|++.+|.+. -+|.....++.|++||+..|.+. ..|+.+ ..++.|+.|+
T Consensus 289 L-~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Ly 365 (1081)
T KOG0618|consen 289 L-VSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELY 365 (1081)
T ss_pred H-HHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHH
Confidence 6 88888888887 66777777888888888888876 444322 1134577888
Q ss_pred CCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEccCCcccccCCCCC
Q 041374 451 MEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETINDFCHHKPKVF 511 (513)
Q Consensus 451 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n~l~~~~p~~~ 511 (513)
+.+|.+++..-..+.+.+.||.|+|++|++......++.+++.| .++||+|+++ .+|..+
T Consensus 366 lanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tv 426 (1081)
T KOG0618|consen 366 LANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTV 426 (1081)
T ss_pred HhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHH
Confidence 88888887777778888889999999998874444478888888 8999999887 555543
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=7.2e-23 Score=226.11 Aligned_cols=363 Identities=20% Similarity=0.228 Sum_probs=221.3
Q ss_pred CcEEEEEcCCCCCcc--ccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCC-CCCCEEEeecCcccccCccccC
Q 041374 76 RRVTKLVLRNQSIGG--FLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNL-SALQNIDIAGNRLHSRVPESLG 152 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l-~~L~~L~l~~n~l~~~~p~~l~ 152 (513)
..|+.+.+.-..+.. ..+..|.+|++|++|.+..+....... ....+|..+..+ .+|+.|++.++.+.. +|..|
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~-~~~~lp~~~~~lp~~Lr~L~~~~~~l~~-lP~~f- 608 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKE-VRWHLPEGFDYLPPKLRLLRWDKYPLRC-MPSNF- 608 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEeccccccccc-ceeecCcchhhcCcccEEEEecCCCCCC-CCCcC-
Confidence 456666554333322 234568889999999997664321100 001355566655 469999999888765 67666
Q ss_pred CCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCe
Q 041374 153 QLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQL 232 (513)
Q Consensus 153 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 232 (513)
...+|++|++++|.+.. ++..+..+++|+.++++++.....+|. +. .+++|++|++++|.....+|..+.++++|+.
T Consensus 609 ~~~~L~~L~L~~s~l~~-L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls-~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~ 685 (1153)
T PLN03210 609 RPENLVKLQMQGSKLEK-LWDGVHSLTGLRNIDLRGSKNLKEIPD-LS-MATNLETLKLSDCSSLVELPSSIQYLNKLED 685 (1153)
T ss_pred CccCCcEEECcCccccc-cccccccCCCCCEEECCCCCCcCcCCc-cc-cCCcccEEEecCCCCccccchhhhccCCCCE
Confidence 46889999999988764 566678889999999988765546774 33 6788999999988766688888889999999
Q ss_pred eeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceE
Q 041374 233 LDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILF 312 (513)
Q Consensus 233 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l 312 (513)
|++++|.....+|..+ ++++|+.|++++|......+ . ..++|+.|++++|.+.. +|..+ .++. +..+
T Consensus 686 L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p------~---~~~nL~~L~L~~n~i~~-lP~~~-~l~~-L~~L 752 (1153)
T PLN03210 686 LDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFP------D---ISTNISWLDLDETAIEE-FPSNL-RLEN-LDEL 752 (1153)
T ss_pred EeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccc------c---ccCCcCeeecCCCcccc-ccccc-cccc-cccc
Confidence 9999876555666554 68889999998885432111 1 13467777777776643 33322 1222 4444
Q ss_pred Eeccccce-------ecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcc
Q 041374 313 TMGLNQIY-------GTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTG 385 (513)
Q Consensus 313 ~l~~~~~~-------~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~ 385 (513)
.+..+... ...+......++|+.|++++|...+.+| .++.++++|+.|++++|...+
T Consensus 753 ~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP----------------~si~~L~~L~~L~Ls~C~~L~ 816 (1153)
T PLN03210 753 ILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP----------------SSIQNLHKLEHLEIENCINLE 816 (1153)
T ss_pred cccccchhhccccccccchhhhhccccchheeCCCCCCccccC----------------hhhhCCCCCCEEECCCCCCcC
Confidence 44332110 0011111223456666666655444333 334445666666666664444
Q ss_pred cChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCccccccccccc
Q 041374 386 ALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALN 465 (513)
Q Consensus 386 ~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 465 (513)
.+|..+ ..+.|+.|++++|.....+|.. .++|+.|++++|.+. .+|.++..+++|+.|++++|+-...+|..+.
T Consensus 817 ~LP~~~--~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~ 890 (1153)
T PLN03210 817 TLPTGI--NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNIS 890 (1153)
T ss_pred eeCCCC--CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccc
Confidence 555443 2334466666665433333322 245666666666665 5666666666666666666544335555666
Q ss_pred CCCCCCEEECCCCC
Q 041374 466 TLKSIKELDLSRNN 479 (513)
Q Consensus 466 ~l~~L~~L~l~~n~ 479 (513)
.+++|+.+++++|.
T Consensus 891 ~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 891 KLKHLETVDFSDCG 904 (1153)
T ss_pred cccCCCeeecCCCc
Confidence 66666666666664
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=2.5e-22 Score=221.91 Aligned_cols=345 Identities=19% Similarity=0.187 Sum_probs=248.7
Q ss_pred cccCCCCCCCEEEeecCcc------cccCccccCCCC-CCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCc
Q 041374 125 PSIGNLSALQNIDIAGNRL------HSRVPESLGQLR-SLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPV 197 (513)
Q Consensus 125 ~~~~~l~~L~~L~l~~n~l------~~~~p~~l~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~ 197 (513)
.+|.++++|+.|.+..+.. ...+|..|..++ +|+.|.+.++++... |..+ ...+|+.|++.++.+. .++.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~l-P~~f-~~~~L~~L~L~~s~l~-~L~~ 628 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCM-PSNF-RPENLVKLQMQGSKLE-KLWD 628 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCC-CCcC-CccCCcEEECcCcccc-cccc
Confidence 4678889999998866532 234566666664 588999988877533 5555 5678889999988887 6777
Q ss_pred cccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcc
Q 041374 198 NIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAH 277 (513)
Q Consensus 198 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~ 277 (513)
.+. .+++|++++++++.....+|. +..+++|++|++++|.....+|..+..+++|+.|++++|...... +..
T Consensus 629 ~~~-~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~L------p~~ 700 (1153)
T PLN03210 629 GVH-SLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEIL------PTG 700 (1153)
T ss_pred ccc-cCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCcc------CCc
Confidence 665 788899999988765556664 777888999999888766678888888889999998887533321 122
Q ss_pred cCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCe
Q 041374 278 LTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNL 357 (513)
Q Consensus 278 l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L 357 (513)
+ ++++|+.|++++|.....+|.. ...++.++++.+.+. .+|..+ .+++|++|++.++... .+...+..+
T Consensus 701 i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~-~l~~~~~~l--- 769 (1153)
T PLN03210 701 I-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSE-KLWERVQPL--- 769 (1153)
T ss_pred C-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCccc-cccccc-cccccccccccccchh-hcccccccc---
Confidence 2 5678888888887655544432 234677777777664 345443 4667777776654322 111111110
Q ss_pred EEeccCCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCC
Q 041374 358 QLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIP 437 (513)
Q Consensus 358 ~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 437 (513)
.+.....+++|+.|++++|...+.+|..+..+ +.|+.|++++|...+.+|..+ ++++|+.|++++|.....+|
T Consensus 770 -----~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L-~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p 842 (1153)
T PLN03210 770 -----TPLMTMLSPSLTRLFLSDIPSLVELPSSIQNL-HKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFP 842 (1153)
T ss_pred -----chhhhhccccchheeCCCCCCccccChhhhCC-CCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccc
Confidence 01112235789999999998887899887654 455999999986555777665 78999999999997665666
Q ss_pred ccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEccCCc
Q 041374 438 VSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETIND 502 (513)
Q Consensus 438 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n~ 502 (513)
.. .++|+.|+|++|.+. .+|..+..+++|+.|++++|+-...+|..+..+++| .+++++|.
T Consensus 843 ~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 843 DI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 53 468999999999998 789999999999999999977555788888889999 99988884
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=1.5e-24 Score=196.62 Aligned_cols=386 Identities=19% Similarity=0.210 Sum_probs=223.3
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeec-CcccccCccccCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAG-NRLHSRVPESLGQL 154 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~-n~l~~~~p~~l~~l 154 (513)
...+.|+|..|++....+.+|..+++||.|||+.|+|+. .-|++|.+++.|..|-+.+ |+|+......|.++
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~-------I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL 139 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISF-------IAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGL 139 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhh-------cChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence 578899999999999999999999999999999999983 2366899999888776666 88988777789999
Q ss_pred CCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCccc------------ccCcc
Q 041374 155 RSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYT------------GSLPH 222 (513)
Q Consensus 155 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~------------~~~~~ 222 (513)
..|+.|.+.-|++.-...+.|..++++..|.+.+|.+. .++...+..+..++.+.+..|.+. ...|.
T Consensus 140 ~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i 218 (498)
T KOG4237|consen 140 SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI 218 (498)
T ss_pred HHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchh
Confidence 99999999999998888889999999999999999998 788766667888888888877622 11222
Q ss_pred cccCCCCCCeeeCccccccccccccccCCCCCcEE--Ec-CCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCc
Q 041374 223 SLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRL--NF-GKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLP 299 (513)
Q Consensus 223 ~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L--~L-~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 299 (513)
.++...-..-..+.++++..+-+..|... ++.+ .+ +.+...... -...+..+++|+.+++++|++++.-+
T Consensus 219 etsgarc~~p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~~~d~~d~~c-----P~~cf~~L~~L~~lnlsnN~i~~i~~ 291 (498)
T KOG4237|consen 219 ETSGARCVSPYRLYYKRINQEDARKFLCS--LESLPSRLSSEDFPDSIC-----PAKCFKKLPNLRKLNLSNNKITRIED 291 (498)
T ss_pred hcccceecchHHHHHHHhcccchhhhhhh--HHhHHHhhccccCcCCcC-----hHHHHhhcccceEeccCCCccchhhh
Confidence 22222222222233333322222111110 1111 00 111111110 11224445555555555555555555
Q ss_pred hhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecc
Q 041374 300 LSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVS 379 (513)
Q Consensus 300 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls 379 (513)
.+|.+... ++.+.+..|++...-...|..+..|+.|++.+|+++...|..|..+. .|..|++-
T Consensus 292 ~aFe~~a~-l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~----------------~l~~l~l~ 354 (498)
T KOG4237|consen 292 GAFEGAAE-LQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF----------------SLSTLNLL 354 (498)
T ss_pred hhhcchhh-hhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccc----------------eeeeeehc
Confidence 55555444 55555555555444444455555555555555555544444443322 22222222
Q ss_pred cCcCc-----------------ccChHHHHhhhcccceEEccCCcCcc---cCCcc---------ccCCCCCCEEeCCCC
Q 041374 380 NNKLT-----------------GALPPQILGILTLSILLDLSGNLLTG---SIPTE---------VGNLKNLVQLDLSEN 430 (513)
Q Consensus 380 ~n~l~-----------------~~~p~~~~~~~~~l~~L~l~~n~l~~---~~~~~---------~~~l~~L~~L~l~~n 430 (513)
.|.+. ...|. ++.+..++.+.+++..+.+ ..|+. ...++.+.+.-=-.|
T Consensus 355 ~Np~~CnC~l~wl~~Wlr~~~~~~~~~--Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSn 432 (498)
T KOG4237|consen 355 SNPFNCNCRLAWLGEWLRKKSVVGNPR--CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSN 432 (498)
T ss_pred cCcccCccchHHHHHHHhhCCCCCCCC--CCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcc
Confidence 22111 00010 1112222344444433221 11111 122334444322233
Q ss_pred ccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEccCC
Q 041374 431 HFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETIN 501 (513)
Q Consensus 431 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n 501 (513)
.....+|..+. ..-.++++.+|.++ .+|.. .+.+| .+|+++|++.-.--..|.+++++ ++=+++|
T Consensus 433 k~lk~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 433 KLLKLLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred cchhhcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 33335555432 23467888888887 66666 56677 78888888875444577788888 7777765
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=7.2e-21 Score=195.66 Aligned_cols=267 Identities=27% Similarity=0.313 Sum_probs=151.1
Q ss_pred CCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEcc
Q 041374 133 LQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVR 212 (513)
Q Consensus 133 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~ 212 (513)
-..|+++++.++. +|..+. ++|+.|++++|.++.. |. ..++|++|++++|+++ .+|.. .++|+.|+++
T Consensus 203 ~~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt~L-P~---lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~Ls 270 (788)
T PRK15387 203 NAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLT-SLPVL----PPGLLELSIF 270 (788)
T ss_pred CcEEEcCCCCCCc-CCcchh--cCCCEEEccCCcCCCC-CC---CCCCCcEEEecCCccC-cccCc----ccccceeecc
Confidence 4455555555553 444443 3555556655555532 22 1355666666666665 45532 3466677777
Q ss_pred CCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCccccccccccc
Q 041374 213 QNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTN 292 (513)
Q Consensus 213 ~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n 292 (513)
+|.++ .+|.. .++|+.|++++|++.. +|. .+++|+.|++++|.+..... -...|+.|++++|
T Consensus 271 ~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~Lp~----------lp~~L~~L~Ls~N 332 (788)
T PRK15387 271 SNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASLPA----------LPSELCKLWAYNN 332 (788)
T ss_pred CCchh-hhhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCccccCCC----------CcccccccccccC
Confidence 77666 34432 2456667777776653 332 23567777777776654211 0123444555555
Q ss_pred ccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCC
Q 041374 293 IFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQN 372 (513)
Q Consensus 293 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~ 372 (513)
.+.+ +|. -..+|+.|++++|++++ +|.. .++
T Consensus 333 ~L~~--------------------------LP~---lp~~Lq~LdLS~N~Ls~-LP~l-------------------p~~ 363 (788)
T PRK15387 333 QLTS--------------------------LPT---LPSGLQELSVSDNQLAS-LPTL-------------------PSE 363 (788)
T ss_pred cccc--------------------------ccc---cccccceEecCCCccCC-CCCC-------------------Ccc
Confidence 4432 111 01256666666666662 2221 134
Q ss_pred CCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCC
Q 041374 373 LMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYME 452 (513)
Q Consensus 373 L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 452 (513)
|+.|++++|++. .+|.. +..|+.|++++|+++ .+|.. .++|+.|++++|.+. .+|.. ..+|+.|+++
T Consensus 364 L~~L~Ls~N~L~-~LP~l----~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls 430 (788)
T PRK15387 364 LYKLWAYNNRLT-SLPAL----PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVY 430 (788)
T ss_pred cceehhhccccc-cCccc----ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhc
Confidence 556666666665 45532 234567777777776 34432 256777777777776 45543 2456777777
Q ss_pred CCcccccccccccCCCCCCEEECCCCCCCcccchhhhccc
Q 041374 453 GNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLS 492 (513)
Q Consensus 453 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 492 (513)
+|+++ .+|..+..+++|+.|++++|++++..|..+..+.
T Consensus 431 ~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~ 469 (788)
T PRK15387 431 RNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 469 (788)
T ss_pred cCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHHh
Confidence 77777 6777777777788888888888777777665443
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=9.3e-21 Score=194.85 Aligned_cols=161 Identities=30% Similarity=0.355 Sum_probs=122.1
Q ss_pred cceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccCh
Q 041374 309 IILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALP 388 (513)
Q Consensus 309 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p 388 (513)
++.+++++|++.+ +|.. ..+|+.|++++|++++ +|.. ..+|+.|++++|+++ .+|
T Consensus 304 L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l-------------------p~~Lq~LdLS~N~Ls-~LP 358 (788)
T PRK15387 304 LQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPTL-------------------PSGLQELSVSDNQLA-SLP 358 (788)
T ss_pred cceeECCCCcccc-CCCC---cccccccccccCcccc-cccc-------------------ccccceEecCCCccC-CCC
Confidence 6666666666553 3321 2356677777777763 3321 147999999999998 566
Q ss_pred HHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCC
Q 041374 389 PQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLK 468 (513)
Q Consensus 389 ~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 468 (513)
.. +..++.|++++|+++ .+|.. .++|+.|++++|.+. .+|.. .++|+.|++++|+++ .+|..+ .
T Consensus 359 ~l----p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~ 422 (788)
T PRK15387 359 TL----PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPMLP---S 422 (788)
T ss_pred CC----Ccccceehhhccccc-cCccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcch---h
Confidence 42 345689999999998 46643 357999999999998 46654 368999999999998 567543 4
Q ss_pred CCCEEECCCCCCCcccchhhhcccCc-eEEccCCcccccCCCCC
Q 041374 469 SIKELDLSRNNLSGHIPEFLENLSFN-KMNETINDFCHHKPKVF 511 (513)
Q Consensus 469 ~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n~l~~~~p~~~ 511 (513)
+|+.|++++|+++ .+|..+.+++.+ .+++++|+|+|.+|..+
T Consensus 423 ~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 423 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 6888999999998 789999999999 99999999999987654
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.83 E-value=8.1e-20 Score=189.18 Aligned_cols=182 Identities=21% Similarity=0.349 Sum_probs=108.2
Q ss_pred CCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEE
Q 041374 131 SALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLS 210 (513)
Q Consensus 131 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~ 210 (513)
.+...|+++++.++. +|..+. ++|+.|++++|.++.. |..+. .+|+.|++++|.++ .+|..+. .+|+.|+
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~LtsL-P~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACIP--EQITTLILDNNELKSL-PENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEME 247 (754)
T ss_pred cCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCCcC-Chhhc--cCCCEEECCCCccc-cCChhhh---ccccEEE
Confidence 356777887777765 555443 4678888888877743 44333 47788888888777 6776543 4688888
Q ss_pred ccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCccccccccc
Q 041374 211 VRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLD 290 (513)
Q Consensus 211 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 290 (513)
+++|.+. .+|..+. .+|+.|++++|++. .+|..+. ++|+.|++++|.++..+. .+ .++|+.|+++
T Consensus 248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~-------~l--p~sL~~L~Ls 312 (754)
T PRK15370 248 LSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPA-------HL--PSGITHLNVQ 312 (754)
T ss_pred CcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCcc-------cc--hhhHHHHHhc
Confidence 8888877 5666553 47888888888877 3454443 478888888887764221 11 1356667777
Q ss_pred ccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCc
Q 041374 291 TNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLT 344 (513)
Q Consensus 291 ~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 344 (513)
+|.+... |..+ +..++.+++++|.+++ +|..+. ++|+.|++++|++.
T Consensus 313 ~N~Lt~L-P~~l---~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~ 359 (754)
T PRK15370 313 SNSLTAL-PETL---PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT 359 (754)
T ss_pred CCccccC-Cccc---cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC
Confidence 7666532 2211 1124444444444432 333221 34555555555444
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.82 E-value=8.4e-22 Score=178.98 Aligned_cols=348 Identities=19% Similarity=0.166 Sum_probs=185.3
Q ss_pred CEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCC-CcCcccCCccccCCCCCCCEEEcc
Q 041374 134 QNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLE-NRLEGSLPVNIGFSLPNLEDLSVR 212 (513)
Q Consensus 134 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~lp~~~~~~l~~L~~L~l~ 212 (513)
..++|..|.|+...|..|+.+++||.|||++|.|+.+.|.+|.++.++..|-+.+ |+|+ .+|...+.++..|+.|.+.
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHhcC
Confidence 3455555555555555555556666666666666555555665555555554444 5555 5666665566666666666
Q ss_pred CCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCc------hhhcccCCCccccc
Q 041374 213 QNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDL------DFIAHLTNCSKLEA 286 (513)
Q Consensus 213 ~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~------~~~~~l~~~~~L~~ 286 (513)
-|++.....+.+..++++..|.+.+|.+.......|..+..++.+.+..|.+.....-.+ ..+..++.......
T Consensus 149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p 228 (498)
T KOG4237|consen 149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSP 228 (498)
T ss_pred hhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecch
Confidence 666665555566666666666666666664444466666666666666555322111000 00111222222223
Q ss_pred ccccccccCCcCchhhhccccccceEEeccccceecCC-ccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCc
Q 041374 287 FGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIP-PEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPS 365 (513)
Q Consensus 287 L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~ 365 (513)
..+.+.++.......+......+..--.+.+...+..| ..|..+++|+.+++++|++++.-+.+|..+
T Consensus 229 ~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~----------- 297 (498)
T KOG4237|consen 229 YRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGA----------- 297 (498)
T ss_pred HHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcch-----------
Confidence 33333333322222221110001111111111222223 357889999999999999997666665433
Q ss_pred cccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCcc----------
Q 041374 366 SLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIE---------- 435 (513)
Q Consensus 366 ~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~---------- 435 (513)
..+++|.|.+|++. .+....|...+.|+.|++.+|+|+..-|..|..+..|.+|++-.|++.-.
T Consensus 298 -----a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wl 371 (498)
T KOG4237|consen 298 -----AELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWL 371 (498)
T ss_pred -----hhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHH
Confidence 55666666666665 45555555555566666666666655566666666666666665554310
Q ss_pred -------CCccccCCCCCCEEeCCCCccc------------------------------------ccccccccCCCCCCE
Q 041374 436 -------IPVSLSACTTLEYLYMEGNSVT------------------------------------GSIPLALNTLKSIKE 472 (513)
Q Consensus 436 -------~~~~~~~l~~L~~L~L~~n~l~------------------------------------~~~~~~~~~l~~L~~ 472 (513)
.|.+ +.-..++.+.+++..+. ..+|..+. ..-.+
T Consensus 372 r~~~~~~~~~C-q~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP--~d~te 448 (498)
T KOG4237|consen 372 RKKSVVGNPRC-QSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIP--VDVTE 448 (498)
T ss_pred hhCCCCCCCCC-CCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCC--chhHH
Confidence 0000 00113344444433221 12332221 23567
Q ss_pred EECCCCCCCcccchhhhcccCceEEccCCcccc
Q 041374 473 LDLSRNNLSGHIPEFLENLSFNKMNETINDFCH 505 (513)
Q Consensus 473 L~l~~n~l~~~~p~~l~~l~~l~l~l~~n~l~~ 505 (513)
+++.+|.++ .+|.. .+.++.+|+++|+++-
T Consensus 449 lyl~gn~~~-~vp~~--~~~~l~~dls~n~i~~ 478 (498)
T KOG4237|consen 449 LYLDGNAIT-SVPDE--LLRSLLLDLSNNRISS 478 (498)
T ss_pred Hhcccchhc-ccCHH--HHhhhhcccccCceeh
Confidence 889999998 67766 4555589999998763
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=3.5e-18 Score=177.10 Aligned_cols=246 Identities=23% Similarity=0.362 Sum_probs=142.9
Q ss_pred CCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeC
Q 041374 156 SLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDL 235 (513)
Q Consensus 156 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 235 (513)
+...|+++++.++.. |..+. ++++.|++++|+++ .+|..+. ++|++|++++|+++ .+|..+ ..+|+.|++
T Consensus 179 ~~~~L~L~~~~LtsL-P~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l--~~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILGLTTI-PACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLT-SIPATL--PDTIQEMEL 248 (754)
T ss_pred CceEEEeCCCCcCcC-Ccccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccc-cCChhh--hccccEEEC
Confidence 455666666665532 33221 34555555555555 4554432 35555555555555 344333 124555555
Q ss_pred ccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEec
Q 041374 236 SLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMG 315 (513)
Q Consensus 236 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~ 315 (513)
++|.+. .+|..+. .+|+.|++ ++|.+.. +|..+. ..++.++++
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~L------------------------------s~N~L~~-LP~~l~---~sL~~L~Ls 291 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDL------------------------------FHNKISC-LPENLP---EELRYLSVY 291 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEEC------------------------------cCCccCc-cccccC---CCCcEEECC
Confidence 555544 2332221 23444444 4444432 222221 136666666
Q ss_pred cccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhh
Q 041374 316 LNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGIL 395 (513)
Q Consensus 316 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~ 395 (513)
+|++++ +|..+. +.|+.|++++|.++. +|.. + .++|+.|++++|.++ .+|..+ +
T Consensus 292 ~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~~----------------l--~~sL~~L~Ls~N~Lt-~LP~~l---~ 345 (754)
T PRK15370 292 DNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPET----------------L--PPGLKTLEAGENALT-SLPASL---P 345 (754)
T ss_pred CCcccc-Ccccch--hhHHHHHhcCCcccc-CCcc----------------c--cccceeccccCCccc-cCChhh---c
Confidence 666653 343322 357777777777763 2221 1 257888888888887 467544 3
Q ss_pred cccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccc----cCCCCCC
Q 041374 396 TLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLAL----NTLKSIK 471 (513)
Q Consensus 396 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~ 471 (513)
+.|+.|++++|+++ .+|..+. ++|+.|++++|.+. .+|..+. .+|+.|++++|++. .+|..+ ..++.+.
T Consensus 346 ~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~ 418 (754)
T PRK15370 346 PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPT 418 (754)
T ss_pred CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCcc
Confidence 45688888888887 4665543 67888888888887 5676654 36888888888887 555544 3347788
Q ss_pred EEECCCCCCC
Q 041374 472 ELDLSRNNLS 481 (513)
Q Consensus 472 ~L~l~~n~l~ 481 (513)
.+++.+|+++
T Consensus 419 ~L~L~~Npls 428 (754)
T PRK15370 419 RIIVEYNPFS 428 (754)
T ss_pred EEEeeCCCcc
Confidence 8888888887
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=2e-19 Score=173.28 Aligned_cols=285 Identities=24% Similarity=0.241 Sum_probs=171.7
Q ss_pred EEeCCCCcCcccCCccccCCCCCCCEEEccCCcccc----cCcccccCCCCCCeeeCccccccc------cccccccCCC
Q 041374 183 LIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTG----SLPHSLSNASNLQLLDLSLNHFSG------QVKIDFNRLP 252 (513)
Q Consensus 183 ~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~L~~n~~~~------~~~~~~~~l~ 252 (513)
.|++..+.+.+.--..++..+..|++++++++.++. .++..+...+.+++++++++.+.+ ..+..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 345555555522222222255667788888777643 234445566667777777776551 1233455566
Q ss_pred CCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCC-C
Q 041374 253 NLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNL-V 331 (513)
Q Consensus 253 ~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~-~ 331 (513)
+|+.|++++|.+.......+ ...... ++|+.|++++|.+.+.... .+...+..+ +
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~--~~l~~~-~~L~~L~ls~~~~~~~~~~---------------------~l~~~l~~~~~ 137 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVL--ESLLRS-SSLQELKLNNNGLGDRGLR---------------------LLAKGLKDLPP 137 (319)
T ss_pred ceeEEEccCCCCChhHHHHH--HHHhcc-CcccEEEeeCCccchHHHH---------------------HHHHHHHhCCC
Confidence 77777777666653221111 011111 3456666655554431111 112233444 7
Q ss_pred CCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhh---cccceEEccCCcC
Q 041374 332 NLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGIL---TLSILLDLSGNLL 408 (513)
Q Consensus 332 ~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~---~~l~~L~l~~n~l 408 (513)
+|+++++++|.+++..... ++..+..+++|++|++++|.+.+.....+.... +.|++|++++|.+
T Consensus 138 ~L~~L~L~~n~l~~~~~~~------------~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 138 ALEKLVLGRNRLEGASCEA------------LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL 205 (319)
T ss_pred CceEEEcCCCcCCchHHHH------------HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc
Confidence 8888888888887532221 122344567888999999888754333332222 3568899999888
Q ss_pred ccc----CCccccCCCCCCEEeCCCCccCccCCcccc-----CCCCCCEEeCCCCcccc----cccccccCCCCCCEEEC
Q 041374 409 TGS----IPTEVGNLKNLVQLDLSENHFSIEIPVSLS-----ACTTLEYLYMEGNSVTG----SIPLALNTLKSIKELDL 475 (513)
Q Consensus 409 ~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l 475 (513)
++. +...+..+++|++|++++|.+.+.....+. ..++|+.|++++|.+++ .+...+..+++|+.+++
T Consensus 206 ~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l 285 (319)
T cd00116 206 TDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDL 285 (319)
T ss_pred ChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEEC
Confidence 643 334566788999999999988753333322 24789999999999873 34455666789999999
Q ss_pred CCCCCCcc----cchhhhcc-cCc-eEEccCCcc
Q 041374 476 SRNNLSGH----IPEFLENL-SFN-KMNETINDF 503 (513)
Q Consensus 476 ~~n~l~~~----~p~~l~~l-~~l-~l~l~~n~l 503 (513)
++|+++.. ....+... ..+ .+|+.+|++
T Consensus 286 ~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 286 RGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 99999855 44445555 566 889888875
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=5.6e-19 Score=170.13 Aligned_cols=59 Identities=25% Similarity=0.259 Sum_probs=34.6
Q ss_pred EEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCccccc----CccccCCCCCCCEEEcccccCC
Q 041374 104 FVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSR----VPESLGQLRSLSFLDISENAFS 168 (513)
Q Consensus 104 ~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~i~ 168 (513)
.|+|..+.+++. .....+..+++|++|+++++.++.. ++..+...++|++++++++.+.
T Consensus 2 ~l~L~~~~l~~~------~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~ 64 (319)
T cd00116 2 QLSLKGELLKTE------RATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETG 64 (319)
T ss_pred ccccccCccccc------chHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccC
Confidence 356666666532 2233445566677777777776432 3444555666777777776654
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=1e-18 Score=141.05 Aligned_cols=162 Identities=28% Similarity=0.539 Sum_probs=139.1
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 155 (513)
.+++.|.++.|++.. +|+.++.+.+|+.|++.+|+++ ++|.+++.++.|+.|+++-|++.. .|..|+.++
T Consensus 33 s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie--------~lp~~issl~klr~lnvgmnrl~~-lprgfgs~p 102 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE--------ELPTSISSLPKLRILNVGMNRLNI-LPRGFGSFP 102 (264)
T ss_pred hhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh--------hcChhhhhchhhhheecchhhhhc-CccccCCCc
Confidence 578889999998875 6778999999999999999998 788899999999999999888865 889999999
Q ss_pred CCCEEEcccccCC-ccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeee
Q 041374 156 SLSFLDISENAFS-GMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLD 234 (513)
Q Consensus 156 ~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 234 (513)
.|+.||+.+|.+. ...|..|+.+..|+.|++++|.++ .+|..++ .+++|+.|.++.|.+- .+|..++.+.+|++|.
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg-~lt~lqil~lrdndll-~lpkeig~lt~lrelh 179 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVG-KLTNLQILSLRDNDLL-SLPKEIGDLTRLRELH 179 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhh-hhcceeEEeeccCchh-hCcHHHHHHHHHHHHh
Confidence 9999999999885 446888888889999999999988 8888888 8899999999999887 7888888999999999
Q ss_pred CccccccccccccccCC
Q 041374 235 LSLNHFSGQVKIDFNRL 251 (513)
Q Consensus 235 L~~n~~~~~~~~~~~~l 251 (513)
+.+|+++ .+|..++++
T Consensus 180 iqgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 180 IQGNRLT-VLPPELANL 195 (264)
T ss_pred cccceee-ecChhhhhh
Confidence 9999887 555555543
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=9.5e-18 Score=135.53 Aligned_cols=99 Identities=31% Similarity=0.507 Sum_probs=54.6
Q ss_pred CCccccCCCCCCEEecccCcCcc-cChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccc
Q 041374 363 VPSSLGNCQNLMLLSVSNNKLTG-ALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLS 441 (513)
Q Consensus 363 ~~~~l~~~~~L~~L~ls~n~l~~-~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 441 (513)
+|..++.++.|+.||++.|++.. .+|..+|.+.++ +-|.+++|.+. .+|..++++++|+.|.+.+|.+. .+|..++
T Consensus 94 lprgfgs~p~levldltynnl~e~~lpgnff~m~tl-ralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig 170 (264)
T KOG0617|consen 94 LPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTL-RALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIG 170 (264)
T ss_pred CccccCCCchhhhhhccccccccccCCcchhHHHHH-HHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHH
Confidence 44455555666666666665543 344444444443 55556666555 55555555666666666666555 4555555
Q ss_pred CCCCCCEEeCCCCccccccccccc
Q 041374 442 ACTTLEYLYMEGNSVTGSIPLALN 465 (513)
Q Consensus 442 ~l~~L~~L~L~~n~l~~~~~~~~~ 465 (513)
.+.+|++|.+.+|+++ .+|..+.
T Consensus 171 ~lt~lrelhiqgnrl~-vlppel~ 193 (264)
T KOG0617|consen 171 DLTRLRELHIQGNRLT-VLPPELA 193 (264)
T ss_pred HHHHHHHHhcccceee-ecChhhh
Confidence 5555666666666555 4444443
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.52 E-value=9.2e-14 Score=143.84 Aligned_cols=150 Identities=29% Similarity=0.512 Sum_probs=110.9
Q ss_pred CCcHHHHHHHHHHHhhCCCCCCCCCCCCCCCCC----CcccceeeCCCC----CcEEEEEcCCCCCccccCccccCCCCC
Q 041374 31 HSNETDRLAYLAIKSQLQDPLGVTKSWNNSISL----CQWTGVTCGHRH----RRVTKLVLRNQSIGGFLSPYVGNLSFL 102 (513)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~----c~~~~v~c~~~~----~~v~~L~l~~~~~~~~~~~~l~~l~~L 102 (513)
.+...|..++..+|+.+.++.. .+|... .| |.|.||.|.... ..|+.|+|+++.+.|.+|..+.++++|
T Consensus 368 ~t~~~~~~aL~~~k~~~~~~~~--~~W~g~-~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L 444 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGLPLR--FGWNGD-PCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHL 444 (623)
T ss_pred ccCchHHHHHHHHHHhcCCccc--CCCCCC-CCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCC
Confidence 3456788999999999876532 478643 23 279999995321 258888999888888888888888888
Q ss_pred CEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCC-CCC
Q 041374 103 RFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNI-SSL 181 (513)
Q Consensus 103 ~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L 181 (513)
++|+|++|.+.|. +|..++.+++|+.|++++|.+++.+|..++++++|++|++++|.+++.+|..+... .++
T Consensus 445 ~~L~Ls~N~l~g~-------iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~ 517 (623)
T PLN03150 445 QSINLSGNSIRGN-------IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHR 517 (623)
T ss_pred CEEECCCCcccCc-------CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccC
Confidence 8888888888754 45567778888888888888888888888888888888888888877777666542 244
Q ss_pred cEEeCCCCc
Q 041374 182 ELIYPLENR 190 (513)
Q Consensus 182 ~~L~l~~n~ 190 (513)
..+++.+|.
T Consensus 518 ~~l~~~~N~ 526 (623)
T PLN03150 518 ASFNFTDNA 526 (623)
T ss_pred ceEEecCCc
Confidence 445555443
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.21 E-value=3.3e-11 Score=124.94 Aligned_cols=111 Identities=36% Similarity=0.439 Sum_probs=98.4
Q ss_pred cceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCC
Q 041374 398 SILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSR 477 (513)
Q Consensus 398 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 477 (513)
+..|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|+|++|++.+.+|..+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccchhhhcc-cCc-eEEccCCcccccCC
Q 041374 478 NNLSGHIPEFLENL-SFN-KMNETINDFCHHKP 508 (513)
Q Consensus 478 n~l~~~~p~~l~~l-~~l-~l~l~~n~l~~~~p 508 (513)
|+++|.+|..+..+ ..+ .+++.+|.....+|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99999999988764 345 88999997444454
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.19 E-value=5.2e-13 Score=127.80 Aligned_cols=170 Identities=32% Similarity=0.461 Sum_probs=86.9
Q ss_pred ccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCC
Q 041374 285 EAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVP 364 (513)
Q Consensus 285 ~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~ 364 (513)
...+++.|++.. +|..+..+.. ++.+.+..|.+. .+|..+.++..|+.++++.|++. ..|..
T Consensus 78 ~~aDlsrNR~~e-lp~~~~~f~~-Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~-------------- 139 (722)
T KOG0532|consen 78 VFADLSRNRFSE-LPEEACAFVS-LESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDG-------------- 139 (722)
T ss_pred hhhhcccccccc-CchHHHHHHH-HHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChh--------------
Confidence 345555555552 3333333322 444444444443 44555555555555555555555 22222
Q ss_pred ccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCC
Q 041374 365 SSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACT 444 (513)
Q Consensus 365 ~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 444 (513)
++.+ -|+.|-+++|+++ .+|+.+. ....+..||.+.|.+. .+|..++.+.+|+.|.+..|.+. .+|+.+. .-
T Consensus 140 --lC~l-pLkvli~sNNkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~L 211 (722)
T KOG0532|consen 140 --LCDL-PLKVLIVSNNKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SL 211 (722)
T ss_pred --hhcC-cceeEEEecCccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CC
Confidence 2221 3555555655554 5555554 2233355555555554 45555555555666666555555 4555554 23
Q ss_pred CCCEEeCCCCcccccccccccCCCCCCEEECCCCCCC
Q 041374 445 TLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLS 481 (513)
Q Consensus 445 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 481 (513)
.|..||++.|++. .+|..|.+|..|++|-|.+|++.
T Consensus 212 pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 212 PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 4555666666655 55556666666666666666655
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.14 E-value=4.1e-12 Score=121.81 Aligned_cols=195 Identities=26% Similarity=0.374 Sum_probs=119.1
Q ss_pred CCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCC
Q 041374 251 LPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNL 330 (513)
Q Consensus 251 l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~ 330 (513)
+..-...+++.|++...+ .....+-.|+.+.+..|.+. .+|..++.+.. +.+++++.|++. .+|..++.+
T Consensus 74 ltdt~~aDlsrNR~~elp-------~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~-lt~l~ls~NqlS-~lp~~lC~l 143 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELP-------EEACAFVSLESLILYHNCIR-TIPEAICNLEA-LTFLDLSSNQLS-HLPDGLCDL 143 (722)
T ss_pred ccchhhhhccccccccCc-------hHHHHHHHHHHHHHHhccce-ecchhhhhhhH-HHHhhhccchhh-cCChhhhcC
Confidence 334455666666665532 33444455666666666665 34555566555 777777777766 344444444
Q ss_pred CCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcc
Q 041374 331 VNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTG 410 (513)
Q Consensus 331 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~ 410 (513)
-|+.+.+++|+++ .+|..++....|..|+.+.|.+. .+|..+.+...+ +.|.+..|++.
T Consensus 144 -pLkvli~sNNkl~-----------------~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl-r~l~vrRn~l~- 202 (722)
T KOG0532|consen 144 -PLKVLIVSNNKLT-----------------SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL-RDLNVRRNHLE- 202 (722)
T ss_pred -cceeEEEecCccc-----------------cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH-HHHHHhhhhhh-
Confidence 3667777777776 23334444566777777777766 666666665555 66667777666
Q ss_pred cCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCC---CCCEEECCCCC
Q 041374 411 SIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLK---SIKELDLSRNN 479 (513)
Q Consensus 411 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~---~L~~L~l~~n~ 479 (513)
.+|..++.+ .|..||++.|++. .+|.+|..|+.|++|-|.+|.+. ..|..++... -.++|+..-|+
T Consensus 203 ~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 203 DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 556666644 3667777777776 67777777777777777777776 5555554322 24566666663
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.09 E-value=7.9e-12 Score=113.08 Aligned_cols=253 Identities=19% Similarity=0.272 Sum_probs=123.9
Q ss_pred CCCCCCEEEccCCccccc----CcccccCCCCCCeeeCccccc---ccccccc-------ccCCCCCcEEEcCCCCCCCC
Q 041374 202 SLPNLEDLSVRQNNYTGS----LPHSLSNASNLQLLDLSLNHF---SGQVKID-------FNRLPNLFRLNFGKNNLGTG 267 (513)
Q Consensus 202 ~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~~---~~~~~~~-------~~~l~~L~~L~L~~n~~~~~ 267 (513)
.+..++++++++|.+... +...+.+.++|+..++++-.. ...+|.. +...++|++++|++|-+...
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 456777788887776532 233455566777776665211 1122222 23345667777777666554
Q ss_pred CCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCC
Q 041374 268 AIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPI 347 (513)
Q Consensus 268 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 347 (513)
....+ -..++++..|++|.+.+|.+....-..++.- +..+. .+ .....-+.|+.+....|.+....
T Consensus 108 g~~~l--~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~a---l~~l~--~~-------kk~~~~~~Lrv~i~~rNrlen~g 173 (382)
T KOG1909|consen 108 GIRGL--EELLSSCTDLEELYLNNCGLGPEAGGRLGRA---LFELA--VN-------KKAASKPKLRVFICGRNRLENGG 173 (382)
T ss_pred chHHH--HHHHHhccCHHHHhhhcCCCChhHHHHHHHH---HHHHH--HH-------hccCCCcceEEEEeecccccccc
Confidence 43322 2344556666666666665542222222110 11110 00 11233456666666666665322
Q ss_pred CccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccC---hHHHHhhhcccceEEccCCcCccc----CCccccCCC
Q 041374 348 PHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGAL---PPQILGILTLSILLDLSGNLLTGS----IPTEVGNLK 420 (513)
Q Consensus 348 ~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~---p~~~~~~~~~l~~L~l~~n~l~~~----~~~~~~~l~ 420 (513)
...+ -..+..++.|+.+.++.|.+...- -..-+...+.|+.||+.+|-++.. +...++.++
T Consensus 174 a~~~------------A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~ 241 (382)
T KOG1909|consen 174 ATAL------------AEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP 241 (382)
T ss_pred HHHH------------HHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc
Confidence 2211 112344566666666666553111 111123334446666666665422 223444556
Q ss_pred CCCEEeCCCCccCccCCccc-----cCCCCCCEEeCCCCccccc----ccccccCCCCCCEEECCCCCC
Q 041374 421 NLVQLDLSENHFSIEIPVSL-----SACTTLEYLYMEGNSVTGS----IPLALNTLKSIKELDLSRNNL 480 (513)
Q Consensus 421 ~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l 480 (513)
+|+.|++++|.+......+| ...++|+.|.+.+|.++.. +..++...+.|+.|+|++|++
T Consensus 242 ~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 242 HLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 66666666666654433332 2245666666666666521 222333455666666666666
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.07 E-value=2.1e-10 Score=113.76 Aligned_cols=135 Identities=34% Similarity=0.457 Sum_probs=66.9
Q ss_pred ccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCC
Q 041374 367 LGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTL 446 (513)
Q Consensus 367 l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 446 (513)
+..+++|+.|++++|++. ++|..... ...++.|++++|++. .+|..+.....|++|.+++|... ..+..+..+.++
T Consensus 159 ~~~l~~L~~L~l~~N~l~-~l~~~~~~-~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l 234 (394)
T COG4886 159 LRNLPNLKNLDLSFNDLS-DLPKLLSN-LSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNL 234 (394)
T ss_pred hhccccccccccCCchhh-hhhhhhhh-hhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccc
Confidence 344455555555555554 44433222 222355555555555 34443333444555555555433 344445555555
Q ss_pred CEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEccCCcccccCC
Q 041374 447 EYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETINDFCHHKP 508 (513)
Q Consensus 447 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n~l~~~~p 508 (513)
..+.+.+|++. ..+..+..++.++.|++++|.++. ++. +..+..+ .+++++|.++...|
T Consensus 235 ~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 235 SGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cccccCCceee-eccchhccccccceeccccccccc-ccc-ccccCccCEEeccCccccccch
Confidence 55555555554 224445555555555555555552 222 4555555 55555555554443
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.05 E-value=1.9e-10 Score=97.73 Aligned_cols=57 Identities=28% Similarity=0.343 Sum_probs=19.2
Q ss_pred CCCCCEEEccCCccccc-CcccccCCCCCCeeeCccccccccc---cccccCCCCCcEEEc
Q 041374 203 LPNLEDLSVRQNNYTGS-LPHSLSNASNLQLLDLSLNHFSGQV---KIDFNRLPNLFRLNF 259 (513)
Q Consensus 203 l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~~~~~~---~~~~~~l~~L~~L~L 259 (513)
+++|++|++++|++... --..+..+++|+.|++.+|.+.... ...+..+|+|+.||-
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 44555555555554421 1123445556666666666554221 112345566666653
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.05 E-value=2.2e-10 Score=113.64 Aligned_cols=197 Identities=30% Similarity=0.436 Sum_probs=124.2
Q ss_pred EEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCC-CCCEEEeecCcccccCccccCCCCCCCE
Q 041374 81 LVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLS-ALQNIDIAGNRLHSRVPESLGQLRSLSF 159 (513)
Q Consensus 81 L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~-~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 159 (513)
+++..+.+... ...+..++.++.|++.+|.++ .++.....++ +|+.|++++|.+.. +|..+..+++|+.
T Consensus 98 l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~--------~i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~ 167 (394)
T COG4886 98 LDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT--------DIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKN 167 (394)
T ss_pred eeccccccccC-chhhhcccceeEEecCCcccc--------cCccccccchhhcccccccccchhh-hhhhhhccccccc
Confidence 44444444221 122344466777777777776 5565666664 77777777777765 4455677777777
Q ss_pred EEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCcccc
Q 041374 160 LDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNH 239 (513)
Q Consensus 160 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 239 (513)
|++++|+++.. +......++|+.|++++|++. .+|..+. ....|+++.+++|++. ..+..+.++.++..+.+.+|+
T Consensus 168 L~l~~N~l~~l-~~~~~~~~~L~~L~ls~N~i~-~l~~~~~-~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~ 243 (394)
T COG4886 168 LDLSFNDLSDL-PKLLSNLSNLNNLDLSGNKIS-DLPPEIE-LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNK 243 (394)
T ss_pred cccCCchhhhh-hhhhhhhhhhhheeccCCccc-cCchhhh-hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCce
Confidence 77777777644 333336677777777777777 6666543 3445777777777544 345566677777777777776
Q ss_pred ccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCch
Q 041374 240 FSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPL 300 (513)
Q Consensus 240 ~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~ 300 (513)
+.. .+..++.++.+++|++++|.++... .+....+++.++++++.+....+.
T Consensus 244 ~~~-~~~~~~~l~~l~~L~~s~n~i~~i~--------~~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 244 LED-LPESIGNLSNLETLDLSNNQISSIS--------SLGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred eee-ccchhccccccceeccccccccccc--------cccccCccCEEeccCccccccchh
Confidence 652 2455666777777777777766522 255566677777777666655443
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.04 E-value=3.1e-11 Score=109.29 Aligned_cols=248 Identities=20% Similarity=0.218 Sum_probs=135.2
Q ss_pred ccCCCCCcEEeCCCCcCcccCC----ccccCCCCCCCEEEccCC---cccccCcc-------cccCCCCCCeeeCccccc
Q 041374 175 IFNISSLELIYPLENRLEGSLP----VNIGFSLPNLEDLSVRQN---NYTGSLPH-------SLSNASNLQLLDLSLNHF 240 (513)
Q Consensus 175 ~~~l~~L~~L~l~~n~l~~~lp----~~~~~~l~~L~~L~l~~n---~l~~~~~~-------~l~~l~~L~~L~L~~n~~ 240 (513)
...+..++.+++++|.+...-. ..+. ..++|+..++++- +....+|+ .+..+++|+.++||+|.+
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~-~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLA-SKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHh-hcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 3455677778888877652211 1222 4456777776642 12223332 334556788888888877
Q ss_pred cccccccc----cCCCCCcEEEcCCCCCCCCCCCC-------chhhcccCCCcccccccccccccCCcCchhhhcccccc
Q 041374 241 SGQVKIDF----NRLPNLFRLNFGKNNLGTGAIGD-------LDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTI 309 (513)
Q Consensus 241 ~~~~~~~~----~~l~~L~~L~L~~n~~~~~~~~~-------~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l 309 (513)
....++.| .+...|++|.|.+|.+....... +.......+-+.|+.+....|++....-..
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~-------- 176 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATA-------- 176 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHH--------
Confidence 65544443 45677888888877765433221 112223333444454444444443222111
Q ss_pred ceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChH
Q 041374 310 ILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPP 389 (513)
Q Consensus 310 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~ 389 (513)
+...+...+.|+.+.++.|.+....-.. +...+..|++|++||+.+|.++..-..
T Consensus 177 -------------~A~~~~~~~~leevr~~qN~I~~eG~~a------------l~eal~~~~~LevLdl~DNtft~egs~ 231 (382)
T KOG1909|consen 177 -------------LAEAFQSHPTLEEVRLSQNGIRPEGVTA------------LAEALEHCPHLEVLDLRDNTFTLEGSV 231 (382)
T ss_pred -------------HHHHHHhccccceEEEecccccCchhHH------------HHHHHHhCCcceeeecccchhhhHHHH
Confidence 1223445567777777777665221110 112345577888888888876532211
Q ss_pred H---HHhhhcccceEEccCCcCcccCCccc-----cCCCCCCEEeCCCCccCcc----CCccccCCCCCCEEeCCCCcc
Q 041374 390 Q---ILGILTLSILLDLSGNLLTGSIPTEV-----GNLKNLVQLDLSENHFSIE----IPVSLSACTTLEYLYMEGNSV 456 (513)
Q Consensus 390 ~---~~~~~~~l~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l 456 (513)
. .....+.|++|++++|.+.......+ ...|.|+.|.+.+|.++.. +..++...+.|+.|+|++|.+
T Consensus 232 ~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 232 ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 1 12233345777888877764433322 2357788888888877632 223445567788888888877
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.03 E-value=1.3e-10 Score=98.62 Aligned_cols=61 Identities=28% Similarity=0.413 Sum_probs=13.9
Q ss_pred CCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCc
Q 041374 130 LSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLE 192 (513)
Q Consensus 130 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 192 (513)
+.+|+.|++++|.++.. +.+..+++|++|++++|.|+...+.....+++|+.|++++|++.
T Consensus 41 l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~ 101 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKIS 101 (175)
T ss_dssp -TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---
T ss_pred hcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCC
Confidence 34444444444444432 12444444444444444444332211123444444444444443
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=3.7e-11 Score=111.84 Aligned_cols=211 Identities=20% Similarity=0.208 Sum_probs=102.9
Q ss_pred CCCCCCCEEEeecCcccccCc--cccCCCCCCCEEEcccccCCcc--CcccccCCCCCcEEeCCCCcCcccCCccccCCC
Q 041374 128 GNLSALQNIDIAGNRLHSRVP--ESLGQLRSLSFLDISENAFSGM--FHSSIFNISSLELIYPLENRLEGSLPVNIGFSL 203 (513)
Q Consensus 128 ~~l~~L~~L~l~~n~l~~~~p--~~l~~l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l 203 (513)
.+++.|+.+.+.++.+.. .+ .....+++++.|||++|-+..- +..-...+++|+.|+++.|++...........+
T Consensus 118 sn~kkL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 345555555555555432 11 2334455666666666544322 112233556666666666655533333333345
Q ss_pred CCCCEEEccCCccccc-CcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCc
Q 041374 204 PNLEDLSVRQNNYTGS-LPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCS 282 (513)
Q Consensus 204 ~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~ 282 (513)
++|+.|.++.|.++.. +...+..+|+|+.|++.+|............+..|+.|+|++|.+-.. +.......++
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~-----~~~~~~~~l~ 271 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDF-----DQGYKVGTLP 271 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccc-----cccccccccc
Confidence 5666666666666532 122234566666666666642222233334455666666666665432 2224455566
Q ss_pred ccccccccccccCCcCchhh------hccccccceEEeccccceec-CCccccCCCCCCEEeccCCcCcc
Q 041374 283 KLEAFGLDTNIFGGVLPLSI------ANLSSTIILFTMGLNQIYGT-IPPEVKNLVNLNGFGLEYNQLTG 345 (513)
Q Consensus 283 ~L~~L~l~~n~~~~~~~~~~------~~~~~~l~~l~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~~ 345 (513)
.|+.|+++.+.+...--... ...+ .+++|++..|++... .-..+..+++|+.+.+..|.+..
T Consensus 272 ~L~~Lnls~tgi~si~~~d~~s~~kt~~f~-kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 272 GLNQLNLSSTGIASIAEPDVESLDKTHTFP-KLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred chhhhhccccCcchhcCCCccchhhhcccc-cceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 66666666665543211111 1112 255555555554311 11123344556666666666653
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.00 E-value=2.2e-10 Score=101.66 Aligned_cols=188 Identities=20% Similarity=0.238 Sum_probs=116.5
Q ss_pred ccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccc-----------------------cC
Q 041374 91 FLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHS-----------------------RV 147 (513)
Q Consensus 91 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~-----------------------~~ 147 (513)
.++-.+.-+++|+.+.++.+.-. .+.+....-+.|+++.+.+..++. ..
T Consensus 205 ~l~f~l~~f~~l~~~~~s~~~~~--------~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~ 276 (490)
T KOG1259|consen 205 RLSFNLNAFRNLKTLKFSALSTE--------NIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSA 276 (490)
T ss_pred ccccchHHhhhhheeeeeccchh--------heeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCce
Confidence 34555667788888888877432 222222223556666655443321 11
Q ss_pred ccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCC
Q 041374 148 PESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNA 227 (513)
Q Consensus 148 p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 227 (513)
...+...+-|+++|+|+|.|+ .+.++..-++.++.|+++.|++. .+.. .. .+++|+.|++++|.++ .+..+-..+
T Consensus 277 ~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La-~L~~L~~LDLS~N~Ls-~~~Gwh~KL 351 (490)
T KOG1259|consen 277 LVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LA-ELPQLQLLDLSGNLLA-ECVGWHLKL 351 (490)
T ss_pred EEecchHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-hh-hcccceEeecccchhH-hhhhhHhhh
Confidence 111222345777788887776 33455566677778888877776 3333 33 5777888888888776 444444566
Q ss_pred CCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcC
Q 041374 228 SNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVL 298 (513)
Q Consensus 228 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 298 (513)
-++++|.+++|.+.. -..++++-+|..|++++|++.. ++-...++++|.|+.+.+.+|.+.+..
T Consensus 352 GNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~-----ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 352 GNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEE-----LDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred cCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhh-----HHHhcccccccHHHHHhhcCCCccccc
Confidence 777788888877752 2346677778888888887765 234466778888888888887776543
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=6.9e-11 Score=110.07 Aligned_cols=187 Identities=16% Similarity=0.146 Sum_probs=122.7
Q ss_pred cCCCCCCCEEEcccccCCccCc-ccccCCCCCcEEeCCCCcCcccCC-ccccCCCCCCCEEEccCCcccccCccc-ccCC
Q 041374 151 LGQLRSLSFLDISENAFSGMFH-SSIFNISSLELIYPLENRLEGSLP-VNIGFSLPNLEDLSVRQNNYTGSLPHS-LSNA 227 (513)
Q Consensus 151 l~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~lp-~~~~~~l~~L~~L~l~~n~l~~~~~~~-l~~l 227 (513)
=+++++|+...|.++.+..... +....+++++.|+++.|-+..-.+ ..+...+++|+.|+++.|++....... -..+
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 3467889999999888764332 466788999999999986652111 234457899999999999887332221 2356
Q ss_pred CCCCeeeCcccccccc-ccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCc-hhhhcc
Q 041374 228 SNLQLLDLSLNHFSGQ-VKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLP-LSIANL 305 (513)
Q Consensus 228 ~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~-~~~~~~ 305 (513)
++|+.|.++.|.++.. +......+|+|+.|++..|...... .........|++|++++|.+-.... ...+.+
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~------~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l 270 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIK------ATSTKILQTLQELDLSNNNLIDFDQGYKVGTL 270 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccccee------cchhhhhhHHhhccccCCcccccccccccccc
Confidence 7889999999988732 2223456799999999988522211 1223445678999999988764432 233444
Q ss_pred ccccceEEeccccceec-CCcc-----ccCCCCCCEEeccCCcCc
Q 041374 306 SSTIILFTMGLNQIYGT-IPPE-----VKNLVNLNGFGLEYNQLT 344 (513)
Q Consensus 306 ~~~l~~l~l~~~~~~~~-~~~~-----~~~~~~L~~L~l~~n~~~ 344 (513)
+. +..++++.+.+... .|+. ...+++|++|++..|++.
T Consensus 271 ~~-L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 271 PG-LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred cc-hhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 44 77777777766543 2222 345677888888888775
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.99 E-value=4.9e-10 Score=118.86 Aligned_cols=209 Identities=18% Similarity=0.197 Sum_probs=103.1
Q ss_pred CCCCEEEeecCcccccCccccCCCCCCCEEEccccc--CCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCE
Q 041374 131 SALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENA--FSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLED 208 (513)
Q Consensus 131 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~ 208 (513)
...+...+.+|.+.. ++... ..++|++|-+.+|. +.....+.|..++.|++|++++|.-.+.+|..++ .+-+|++
T Consensus 523 ~~~rr~s~~~~~~~~-~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~-~Li~Lry 599 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEH-IAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIG-ELVHLRY 599 (889)
T ss_pred hheeEEEEeccchhh-ccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHh-hhhhhhc
Confidence 444555555544433 22221 22356666555554 3333334455566666666665554446666666 5666666
Q ss_pred EEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCccccccc
Q 041374 209 LSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFG 288 (513)
Q Consensus 209 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~ 288 (513)
|+++++.+. .+|..+.++.+|.+|++..+......+.....+++|++|.+....... +......+..+.+|+.+.
T Consensus 600 L~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~----~~~~l~el~~Le~L~~ls 674 (889)
T KOG4658|consen 600 LDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSN----DKLLLKELENLEHLENLS 674 (889)
T ss_pred ccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccccc----chhhHHhhhcccchhhhe
Confidence 666666666 566666666666666666655444444445556666666664443111 111223334444444444
Q ss_pred ccccccCC-cCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCC
Q 041374 289 LDTNIFGG-VLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIP 348 (513)
Q Consensus 289 l~~n~~~~-~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 348 (513)
........ .-......+.+..+.+.+..+.. ...+..+..+.+|+.|.+.++.......
T Consensus 675 ~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e~~~ 734 (889)
T KOG4658|consen 675 ITISSVLLLEDLLGMTRLRSLLQSLSIEGCSK-RTLISSLGSLGNLEELSILDCGISEIVI 734 (889)
T ss_pred eecchhHhHhhhhhhHHHHHHhHhhhhccccc-ceeecccccccCcceEEEEcCCCchhhc
Confidence 43222100 00011111111122222222111 2344556778888999998888874433
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.89 E-value=1.5e-09 Score=115.16 Aligned_cols=128 Identities=23% Similarity=0.281 Sum_probs=76.8
Q ss_pred CCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCc--ccccCccccCCCCCCCEEEcccccCCccCcccccC
Q 041374 100 SFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNR--LHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFN 177 (513)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~--l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~ 177 (513)
...|.+.+.+|.+. .++... .++.|++|-+.+|. +.......|..++.|+.||+++|.--+.+|..+++
T Consensus 523 ~~~rr~s~~~~~~~--------~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~ 593 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE--------HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE 593 (889)
T ss_pred hheeEEEEeccchh--------hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh
Confidence 44555555555543 223222 22356666666664 44434444666677777777766655666777777
Q ss_pred CCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccc
Q 041374 178 ISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLN 238 (513)
Q Consensus 178 l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 238 (513)
+-+|++|+++++.+. .+|..+. .+++|.+|++..+.....+|.....+.+|++|.+...
T Consensus 594 Li~LryL~L~~t~I~-~LP~~l~-~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 594 LVHLRYLDLSDTGIS-HLPSGLG-NLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred hhhhhcccccCCCcc-ccchHHH-HHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 777777777777766 6676666 6667777777766654444555555677777766554
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.87 E-value=5.1e-10 Score=99.34 Aligned_cols=130 Identities=25% Similarity=0.208 Sum_probs=84.4
Q ss_pred CCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEE
Q 041374 370 CQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYL 449 (513)
Q Consensus 370 ~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 449 (513)
...|+.+|+++|.++ .+.+..- ..+.++.|++++|.+.. ...+..+++|+.||+++|.++ .+..+-..+-++++|
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvK-L~Pkir~L~lS~N~i~~--v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVK-LAPKLRRLILSQNRIRT--VQNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL 357 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhh-hccceeEEeccccceee--ehhhhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence 356777888888776 5544442 33344778888887762 223667778888888888776 444444556677777
Q ss_pred eCCCCcccccccccccCCCCCCEEECCCCCCCcccc-hhhhcccCc-eEEccCCccccc
Q 041374 450 YMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIP-EFLENLSFN-KMNETINDFCHH 506 (513)
Q Consensus 450 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~l-~l~l~~n~l~~~ 506 (513)
.|++|.+. ...++..+.+|..||+++|+|..... ..+++++-| .+.|.+|++.+.
T Consensus 358 ~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 358 KLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred ehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 88877774 23456667777778888887753222 145666666 777777777653
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.86 E-value=1.7e-09 Score=75.37 Aligned_cols=61 Identities=41% Similarity=0.491 Sum_probs=34.6
Q ss_pred CCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCC
Q 041374 420 KNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNL 480 (513)
Q Consensus 420 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 480 (513)
|+|++|++++|++....+..|.++++|++|++++|+++...+..|..+++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3455566666655533334555566666666666666545555556666666666665553
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.78 E-value=4.5e-09 Score=73.27 Aligned_cols=39 Identities=36% Similarity=0.675 Sum_probs=17.5
Q ss_pred cCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccc
Q 041374 127 IGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISEN 165 (513)
Q Consensus 127 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n 165 (513)
|.++++|++|++++|.++...|..|.++++|++|++++|
T Consensus 21 f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 21 FSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred HcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 344444444444444444433344444444444444444
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.55 E-value=1.7e-08 Score=100.38 Aligned_cols=83 Identities=30% Similarity=0.291 Sum_probs=41.9
Q ss_pred ceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCccccc---cccc-ccCCCCCCEEE
Q 041374 399 ILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGS---IPLA-LNTLKSIKELD 474 (513)
Q Consensus 399 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~-~~~l~~L~~L~ 474 (513)
+.+++++|++. ..+..+..+..+..|++.+|.+.. -..+...+.+..+....|.+... .... ....+.++.+.
T Consensus 235 ~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (414)
T KOG0531|consen 235 RELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISN--LEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLT 311 (414)
T ss_pred HHHhcccCccc-cccccccccccccccchhhccccc--cccccccchHHHhccCcchhcchhhhhccccccccccccccc
Confidence 55666666665 222444555666666666665542 12233445555555555554411 1111 33445566666
Q ss_pred CCCCCCCccc
Q 041374 475 LSRNNLSGHI 484 (513)
Q Consensus 475 l~~n~l~~~~ 484 (513)
+..|.+....
T Consensus 312 ~~~~~~~~~~ 321 (414)
T KOG0531|consen 312 LELNPIRKIS 321 (414)
T ss_pred cccCcccccc
Confidence 6666655433
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.52 E-value=2e-08 Score=99.82 Aligned_cols=85 Identities=26% Similarity=0.348 Sum_probs=37.9
Q ss_pred ccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccc
Q 041374 96 VGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSI 175 (513)
Q Consensus 96 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~ 175 (513)
+..+++|+.+++.+|.|. .+...+..+++|++|++++|.++... .+..++.|+.|++++|.|+.. ..+
T Consensus 91 l~~~~~l~~l~l~~n~i~--------~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~ 158 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIE--------KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGL 158 (414)
T ss_pred cccccceeeeeccccchh--------hcccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhc--cCC
Confidence 344445555555555444 22222344455555555555554431 233444455555555554422 222
Q ss_pred cCCCCCcEEeCCCCcCc
Q 041374 176 FNISSLELIYPLENRLE 192 (513)
Q Consensus 176 ~~l~~L~~L~l~~n~l~ 192 (513)
..+..|+.+++++|++.
T Consensus 159 ~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 159 ESLKSLKLLDLSYNRIV 175 (414)
T ss_pred ccchhhhcccCCcchhh
Confidence 23444444455554444
No 43
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.48 E-value=1.3e-08 Score=79.86 Aligned_cols=135 Identities=20% Similarity=0.235 Sum_probs=102.1
Q ss_pred CCCEEecccCcCcccChHHHHhhhcc--cceEEccCCcCcccCCcccc-CCCCCCEEeCCCCccCccCCccccCCCCCCE
Q 041374 372 NLMLLSVSNNKLTGALPPQILGILTL--SILLDLSGNLLTGSIPTEVG-NLKNLVQLDLSENHFSIEIPVSLSACTTLEY 448 (513)
Q Consensus 372 ~L~~L~ls~n~l~~~~p~~~~~~~~~--l~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 448 (513)
.+..++|++|.+. .++......... +..+++++|.+. .+|+.+. .++.++.|++++|.+. .+|+.+..++.|+.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 4567888888875 566555443333 356799999998 5555544 5678999999999998 78988999999999
Q ss_pred EeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEccCCcccccCCCCC
Q 041374 449 LYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETINDFCHHKPKVF 511 (513)
Q Consensus 449 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n~l~~~~p~~~ 511 (513)
|+++.|.+. ..|+.+..+.++-.||..+|.+. .+|..+-.-... .+++.++++.|.-|..+
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~kl 166 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKL 166 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcccc
Confidence 999999998 66777777899999999999887 555543222222 77778888988887655
No 44
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.44 E-value=2.1e-08 Score=88.06 Aligned_cols=216 Identities=21% Similarity=0.236 Sum_probs=141.1
Q ss_pred CcEEEEEcCCCCCccc----cCccccCCCCCCEEeCCCCCCccc----CCCCCCCCCcccCCCCCCCEEEeecCcccccC
Q 041374 76 RRVTKLVLRNQSIGGF----LSPYVGNLSFLRFVNLASNNLHGE----IPYEHGQLPPSIGNLSALQNIDIAGNRLHSRV 147 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~ 147 (513)
..++.++||+|.+... +...+.+-.+|+..++++-. +|. ++..+.-+.+++-+|++|+..++|+|.+....
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 5689999999998754 45566777889998887653 332 22222223445678999999999999987665
Q ss_pred ccc----cCCCCCCCEEEcccccCCccCccccc-------------CCCCCcEEeCCCCcCcccCCcc----ccCCCCCC
Q 041374 148 PES----LGQLRSLSFLDISENAFSGMFHSSIF-------------NISSLELIYPLENRLEGSLPVN----IGFSLPNL 206 (513)
Q Consensus 148 p~~----l~~l~~L~~L~Ls~n~i~~~~~~~~~-------------~l~~L~~L~l~~n~l~~~lp~~----~~~~l~~L 206 (513)
|.. +++-+.|.+|.+++|.+.......++ +-+.|++..+..|++. ..|.. ......+|
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~l 187 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHENL 187 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCc
Confidence 543 55678899999999987644333222 4578888888888886 33321 11123578
Q ss_pred CEEEccCCcccccCc-----ccccCCCCCCeeeCcccccccc----ccccccCCCCCcEEEcCCCCCCCCCCCCchhhcc
Q 041374 207 EDLSVRQNNYTGSLP-----HSLSNASNLQLLDLSLNHFSGQ----VKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAH 277 (513)
Q Consensus 207 ~~L~l~~n~l~~~~~-----~~l~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~ 277 (513)
+++.+..|.|..... ..+..+.+|+.||+++|.++-. ....+..++.|+.|.+.+|-++..+...+ ...
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v--~~~ 265 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSV--LRR 265 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHH--HHH
Confidence 888888887763211 1234677889999999887633 33445667778888888887776543221 122
Q ss_pred c--CCCcccccccccccccC
Q 041374 278 L--TNCSKLEAFGLDTNIFG 295 (513)
Q Consensus 278 l--~~~~~L~~L~l~~n~~~ 295 (513)
+ ...++|..|...+|...
T Consensus 266 f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 266 FNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred hhhhcCCCccccccchhhhc
Confidence 2 23355566655555443
No 45
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.43 E-value=4e-07 Score=57.90 Aligned_cols=39 Identities=54% Similarity=0.983 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhCC-CCCCCCCCCCCC--CCCCcccceeeC
Q 041374 34 ETDRLAYLAIKSQLQ-DPLGVTKSWNNS--ISLCQWTGVTCG 72 (513)
Q Consensus 34 ~~~~~~l~~~~~~~~-~~~~~~~~w~~~--~~~c~~~~v~c~ 72 (513)
+.|+++|++||.++. +|...+.+|... .++|+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 578999999999999 677899999887 799999999995
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=7.4e-08 Score=85.78 Aligned_cols=87 Identities=22% Similarity=0.231 Sum_probs=47.7
Q ss_pred CCCCCCEEEccCCcccc--cCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccC
Q 041374 202 SLPNLEDLSVRQNNYTG--SLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLT 279 (513)
Q Consensus 202 ~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~ 279 (513)
....+++++|.+|.++. .+...+.++|.|++|+++.|.+...+...-....+|+.|-|.+..+.-.. .-..+.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~-----~~s~l~ 143 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQ-----STSSLD 143 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhh-----hhhhhh
Confidence 34556666666666652 22334456777777777777665433322234556777777666554321 113345
Q ss_pred CCcccccccccccc
Q 041374 280 NCSKLEAFGLDTNI 293 (513)
Q Consensus 280 ~~~~L~~L~l~~n~ 293 (513)
.+|.+++++++.|.
T Consensus 144 ~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 144 DLPKVTELHMSDNS 157 (418)
T ss_pred cchhhhhhhhccch
Confidence 55666666666653
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=1e-08 Score=91.17 Aligned_cols=181 Identities=17% Similarity=0.145 Sum_probs=114.0
Q ss_pred CCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEccccc-CCccC-cccccCC
Q 041374 101 FLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENA-FSGMF-HSSIFNI 178 (513)
Q Consensus 101 ~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-i~~~~-~~~~~~l 178 (513)
.|++|||+...|+.. .+...++.|.+|+.|.+.++++...+...+++-.+|+.|+++.+. ++... .-.+.++
T Consensus 186 Rlq~lDLS~s~it~s------tl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~sc 259 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVS------TLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSC 259 (419)
T ss_pred hhHHhhcchhheeHH------HHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhh
Confidence 478888888777643 333346677888888888888887777778888888888888764 33221 1234577
Q ss_pred CCCcEEeCCCCcCcccCCc-cccCCCCCCCEEEccCCccc---ccCcccccCCCCCCeeeCcccc-ccccccccccCCCC
Q 041374 179 SSLELIYPLENRLEGSLPV-NIGFSLPNLEDLSVRQNNYT---GSLPHSLSNASNLQLLDLSLNH-FSGQVKIDFNRLPN 253 (513)
Q Consensus 179 ~~L~~L~l~~n~l~~~lp~-~~~~~l~~L~~L~l~~n~l~---~~~~~~l~~l~~L~~L~L~~n~-~~~~~~~~~~~l~~ 253 (513)
+.|..|++++|.+....-. .+..--++|..|+++++.-. ..+..-...+++|.+|||+++. +.......|.+++.
T Consensus 260 s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~ 339 (419)
T KOG2120|consen 260 SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY 339 (419)
T ss_pred hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcch
Confidence 8888888888876533211 11112256777888776522 1111223567888888888764 34444556777888
Q ss_pred CcEEEcCCCCCCCCCCCCchhhcccCCCccccccccccc
Q 041374 254 LFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTN 292 (513)
Q Consensus 254 L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n 292 (513)
|++|.++.|..-. + ...-.+...+.|..|++.++
T Consensus 340 L~~lSlsRCY~i~--p---~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 340 LQHLSLSRCYDII--P---ETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred heeeehhhhcCCC--h---HHeeeeccCcceEEEEeccc
Confidence 8888888775322 1 22344566677777776654
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.26 E-value=5.5e-08 Score=96.58 Aligned_cols=169 Identities=31% Similarity=0.338 Sum_probs=114.5
Q ss_pred CccccCCCCCCEEeccCCcCccCC--CccccCCCCeE-----------E---ec---cCCccccCCCCCCEEecccCcCc
Q 041374 324 PPEVKNLVNLNGFGLEYNQLTGPI--PHAIGELRNLQ-----------L---RG---NVPSSLGNCQNLMLLSVSNNKLT 384 (513)
Q Consensus 324 ~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~l~~L~-----------l---~~---~~~~~l~~~~~L~~L~ls~n~l~ 384 (513)
|-.+..+..|++|.+.++++.... .+.-..+++|- + .| +-|.| ..|...+++.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~W----n~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVW----NKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhh----hhHhhhhcchhhHH
Confidence 445566778888888888776310 00111222221 0 01 11222 46778888888875
Q ss_pred ccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCc-cccCCCCCCEEeCCCCccccccccc
Q 041374 385 GALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPV-SLSACTTLEYLYMEGNSVTGSIPLA 463 (513)
Q Consensus 385 ~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~ 463 (513)
.+.. ..+..+.++.|++++|+++.. +.+.+++.|++|||+.|.+. .+|. ...++. |+.|.+++|.++. ..+
T Consensus 178 -~mD~-SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t--L~g 249 (1096)
T KOG1859|consen 178 -LMDE-SLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT--LRG 249 (1096)
T ss_pred -hHHH-HHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHh--hhh
Confidence 3333 335556669999999999743 37889999999999999987 5554 233444 9999999999873 356
Q ss_pred ccCCCCCCEEECCCCCCCcccc-hhhhcccCc-eEEccCCccc
Q 041374 464 LNTLKSIKELDLSRNNLSGHIP-EFLENLSFN-KMNETINDFC 504 (513)
Q Consensus 464 ~~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~l-~l~l~~n~l~ 504 (513)
+.++.+|+.||++.|-|.+.-. ..+..|.+| .++|.+|++.
T Consensus 250 ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 250 IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 8889999999999998864322 245667777 9999999875
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=8.1e-08 Score=85.54 Aligned_cols=131 Identities=18% Similarity=0.202 Sum_probs=83.3
Q ss_pred CCEEEcccccCCccCcccccCC--CCCcEEeCCCCcCccc-CCccccCCCCCCCEEEccCCccccc-CcccccCCCCCCe
Q 041374 157 LSFLDISENAFSGMFHSSIFNI--SSLELIYPLENRLEGS-LPVNIGFSLPNLEDLSVRQNNYTGS-LPHSLSNASNLQL 232 (513)
Q Consensus 157 L~~L~Ls~n~i~~~~~~~~~~l--~~L~~L~l~~n~l~~~-lp~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~ 232 (513)
-+.+|+.+-.|. |..+..+ ....++.+....+... +.+.+...-..|+++||++..++.. +-..+.++.+|+.
T Consensus 138 W~~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~ 214 (419)
T KOG2120|consen 138 WQTLDLTGRNIH---PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKN 214 (419)
T ss_pred eeeeccCCCccC---hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhh
Confidence 356777665554 3333333 2344444443333222 1121110123589999999887732 2334678899999
Q ss_pred eeCccccccccccccccCCCCCcEEEcCCCC-CCCCCCCCchhhcccCCCcccccccccccccC
Q 041374 233 LDLSLNHFSGQVKIDFNRLPNLFRLNFGKNN-LGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFG 295 (513)
Q Consensus 233 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 295 (513)
|.+.|+++.+.+...+.+-.+|+.|+++.+. ++. ...-.-+.+|+.|.+|+++++...
T Consensus 215 lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~-----n~~~ll~~scs~L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 215 LSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTE-----NALQLLLSSCSRLDELNLSWCFLF 273 (419)
T ss_pred ccccccccCcHHHHHHhccccceeeccccccccch-----hHHHHHHHhhhhHhhcCchHhhcc
Confidence 9999999998888888888999999998874 222 222344678888999999888654
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=3.6e-07 Score=81.52 Aligned_cols=41 Identities=24% Similarity=0.334 Sum_probs=19.3
Q ss_pred CCCCCCeeeCccccccccc-cccccCCCCCcEEEcCCCCCCC
Q 041374 226 NASNLQLLDLSLNHFSGQV-KIDFNRLPNLFRLNFGKNNLGT 266 (513)
Q Consensus 226 ~l~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~L~~n~~~~ 266 (513)
.++.+..|+|+.|++.... -+.+..+++|..|.+..+.+..
T Consensus 222 ~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 222 PFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred CCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 3444445555555554221 1234455555555555555443
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.07 E-value=9.4e-08 Score=95.01 Aligned_cols=127 Identities=28% Similarity=0.276 Sum_probs=85.4
Q ss_pred CCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEc
Q 041374 132 ALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSV 211 (513)
Q Consensus 132 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l 211 (513)
.|.+.+.++|.+.. ...++.-++.|+.|+|++|+++.. +.+..++.|+.|+++.|.+. .+|..-- .-.+|+.|.+
T Consensus 165 ~L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~-~gc~L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSM-VGCKLQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccch-hhhhheeeee
Confidence 45556666666653 445566667788888888887755 36777888888888888887 6664322 2234888888
Q ss_pred cCCcccccCcccccCCCCCCeeeCcccccccccc-ccccCCCCCcEEEcCCCCCC
Q 041374 212 RQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVK-IDFNRLPNLFRLNFGKNNLG 265 (513)
Q Consensus 212 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~~~ 265 (513)
++|.++. + ..+.++.+|+.||+++|-+.+... ..+..+..|+.|+|.+|.+-
T Consensus 240 rnN~l~t-L-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 240 RNNALTT-L-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cccHHHh-h-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 8888772 2 246778888888888887764322 22455667778888887653
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.97 E-value=7.8e-06 Score=52.01 Aligned_cols=36 Identities=36% Similarity=0.578 Sum_probs=19.1
Q ss_pred CCCEEeCCCCcccccccccccCCCCCCEEECCCCCCC
Q 041374 445 TLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLS 481 (513)
Q Consensus 445 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 481 (513)
+|++|++++|+++ .+|..+.+|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34444555556666666655555
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.96 E-value=8.4e-06 Score=51.86 Aligned_cols=36 Identities=31% Similarity=0.612 Sum_probs=20.3
Q ss_pred CCCEEEeecCcccccCccccCCCCCCCEEEcccccCC
Q 041374 132 ALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFS 168 (513)
Q Consensus 132 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~ 168 (513)
+|++|++++|+++. +|..++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 55666666666654 4444666666666666666655
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.96 E-value=6.1e-07 Score=70.73 Aligned_cols=118 Identities=20% Similarity=0.264 Sum_probs=84.1
Q ss_pred CCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEE
Q 041374 370 CQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYL 449 (513)
Q Consensus 370 ~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 449 (513)
...|+..++++|.+. .+|+.+...++.++.+++++|.++ .+|..+..++.|+.|+++.|++. ..|.-+..+.++-.|
T Consensus 52 ~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 52 GYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML 128 (177)
T ss_pred CceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence 356777788888887 777777777766688888888888 67777888888888888888887 667766668888888
Q ss_pred eCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcc
Q 041374 450 YMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENL 491 (513)
Q Consensus 450 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l 491 (513)
+..+|.+. .+|..+-.-...-..++.++++.+.-|..++.+
T Consensus 129 ds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klqa~ 169 (177)
T KOG4579|consen 129 DSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQAL 169 (177)
T ss_pred cCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccccccc
Confidence 88888776 444443222333344556777776555554443
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.93 E-value=2.6e-06 Score=75.20 Aligned_cols=78 Identities=23% Similarity=0.343 Sum_probs=41.0
Q ss_pred CCCCCeeeCcccccccccccc----ccCCCCCcEEEcCCCCCCCCCCCCc----hhhcccCCCcccccccccccccCCcC
Q 041374 227 ASNLQLLDLSLNHFSGQVKID----FNRLPNLFRLNFGKNNLGTGAIGDL----DFIAHLTNCSKLEAFGLDTNIFGGVL 298 (513)
Q Consensus 227 l~~L~~L~L~~n~~~~~~~~~----~~~l~~L~~L~L~~n~~~~~~~~~~----~~~~~l~~~~~L~~L~l~~n~~~~~~ 298 (513)
+..+..++|+||.+....... +.+-.+|+..++++-.......... -..+++-+|++|+..+++.|.|....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 455556666666554433332 2334555555554432211111100 12345667788888888888877777
Q ss_pred chhhhc
Q 041374 299 PLSIAN 304 (513)
Q Consensus 299 ~~~~~~ 304 (513)
|..++.
T Consensus 109 ~e~L~d 114 (388)
T COG5238 109 PEELGD 114 (388)
T ss_pred chHHHH
Confidence 665544
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.82 E-value=4e-05 Score=64.91 Aligned_cols=105 Identities=25% Similarity=0.284 Sum_probs=55.1
Q ss_pred CCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEE
Q 041374 131 SALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLS 210 (513)
Q Consensus 131 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~ 210 (513)
.+...+|+++|.+... +.|..++.|.+|.+++|.|+.+.|.--. .+++|..|.
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~-------------------------~~p~l~~L~ 94 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDT-------------------------FLPNLKTLI 94 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhh-------------------------hccccceEE
Confidence 3556677777776542 3466777778888888777754443222 334444444
Q ss_pred ccCCcccccC-cccccCCCCCCeeeCccccccccc---cccccCCCCCcEEEcCCC
Q 041374 211 VRQNNYTGSL-PHSLSNASNLQLLDLSLNHFSGQV---KIDFNRLPNLFRLNFGKN 262 (513)
Q Consensus 211 l~~n~l~~~~-~~~l~~l~~L~~L~L~~n~~~~~~---~~~~~~l~~L~~L~L~~n 262 (513)
+.+|++.... -..+..+++|++|.+-+|.++..- -..+..+|+|+.||+++-
T Consensus 95 LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 95 LTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 4444443100 012344555555555555554221 122445566666665443
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.74 E-value=9.3e-05 Score=71.17 Aligned_cols=120 Identities=16% Similarity=0.236 Sum_probs=72.7
Q ss_pred cccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccC
Q 041374 326 EVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSG 405 (513)
Q Consensus 326 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~ 405 (513)
.+..+.++++|++++|.++ .+|. -.++|++|.+++|.-...+|..+ +..|++|++++
T Consensus 47 r~~~~~~l~~L~Is~c~L~-----------------sLP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~ 103 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIE-----------------SLPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCH 103 (426)
T ss_pred HHHHhcCCCEEEeCCCCCc-----------------ccCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccC
Confidence 4667899999999998666 3331 12579999999875444666533 45669999999
Q ss_pred C-cCcccCCccccCCCCCCEEeCCCCccC--ccCCccccCC------------------CCCCEEeCCCCcccccccccc
Q 041374 406 N-LLTGSIPTEVGNLKNLVQLDLSENHFS--IEIPVSLSAC------------------TTLEYLYMEGNSVTGSIPLAL 464 (513)
Q Consensus 406 n-~l~~~~~~~~~~l~~L~~L~l~~n~~~--~~~~~~~~~l------------------~~L~~L~L~~n~l~~~~~~~~ 464 (513)
| .+. .+|. .|+.|++..+... +.+|..+..+ ++|++|++++|... ..|..+
T Consensus 104 Cs~L~-sLP~------sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~L 175 (426)
T PRK15386 104 CPEIS-GLPE------SVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKL 175 (426)
T ss_pred ccccc-cccc------ccceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCcccc
Confidence 8 454 4553 4666666655431 2344433221 35666666666654 334333
Q ss_pred cCCCCCCEEECCCC
Q 041374 465 NTLKSIKELDLSRN 478 (513)
Q Consensus 465 ~~l~~L~~L~l~~n 478 (513)
. .+|+.|+++.|
T Consensus 176 P--~SLk~L~ls~n 187 (426)
T PRK15386 176 P--ESLQSITLHIE 187 (426)
T ss_pred c--ccCcEEEeccc
Confidence 2 36666666655
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.72 E-value=9.9e-05 Score=70.96 Aligned_cols=131 Identities=15% Similarity=0.094 Sum_probs=69.2
Q ss_pred cceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccc-cCCCCeEEeccCCccc-cCCCCCCEEecccCcCccc
Q 041374 309 IILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAI-GELRNLQLRGNVPSSL-GNCQNLMLLSVSNNKLTGA 386 (513)
Q Consensus 309 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~l~~L~l~~~~~~~l-~~~~~L~~L~ls~n~l~~~ 386 (513)
+..|+++.|.+. .+| .-..+|++|.+++|.-...+|..+ .+|+.|.++++- .+ .-.++|+.|+++.+... .
T Consensus 54 l~~L~Is~c~L~-sLP---~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs--~L~sLP~sLe~L~L~~n~~~-~ 126 (426)
T PRK15386 54 SGRLYIKDCDIE-SLP---VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCP--EISGLPESVRSLEIKGSATD-S 126 (426)
T ss_pred CCEEEeCCCCCc-ccC---CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCcc--cccccccccceEEeCCCCCc-c
Confidence 889999988543 444 333469999998865443445322 234444443321 11 11233444444333322 1
Q ss_pred ChHHHHhhhcccceEEccCCc-Ccc-cCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCc
Q 041374 387 LPPQILGILTLSILLDLSGNL-LTG-SIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNS 455 (513)
Q Consensus 387 ~p~~~~~~~~~l~~L~l~~n~-l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 455 (513)
+...++.|+.|.+.+++ ... ..+.. -.++|++|++++|... ..|..+. .+|+.|+++.+.
T Consensus 127 ----L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 127 ----IKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred ----cccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence 22344444555554322 100 01100 1157999999999866 4555544 589999998774
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.64 E-value=1.3e-05 Score=83.61 Aligned_cols=160 Identities=24% Similarity=0.271 Sum_probs=68.9
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCC---C--CCCCccc---CCCCCCCEEEeecCccc-cc
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYE---H--GQLPPSI---GNLSALQNIDIAGNRLH-SR 146 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~---~--~~l~~~~---~~l~~L~~L~l~~n~l~-~~ 146 (513)
-.++.+++.+..........+.+.. |+.+.|.+-......-.. + ..+-+.+ ..-.+|++||+++.... ..
T Consensus 60 f~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~ 138 (699)
T KOG3665|consen 60 FNLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNG 138 (699)
T ss_pred heeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhcc
Confidence 4577777776665544333344444 777776654332211000 0 0000000 01135666666654332 11
Q ss_pred CccccC-CCCCCCEEEcccccCCcc-CcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccc-cCccc
Q 041374 147 VPESLG-QLRSLSFLDISENAFSGM-FHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTG-SLPHS 223 (513)
Q Consensus 147 ~p~~l~-~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~-~~~~~ 223 (513)
.|..++ .+|.|+.|.+++-.+... .-....++++|..||+++++++ .+ ..+. .+++|+.|.+.+=.+.. ..-..
T Consensus 139 W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS-~LknLq~L~mrnLe~e~~~~l~~ 215 (699)
T KOG3665|consen 139 WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGIS-RLKNLQVLSMRNLEFESYQDLID 215 (699)
T ss_pred HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHh-ccccHHHHhccCCCCCchhhHHH
Confidence 222222 346666666665443211 1122234555555555555554 22 2233 45555555554443331 11112
Q ss_pred ccCCCCCCeeeCcccc
Q 041374 224 LSNASNLQLLDLSLNH 239 (513)
Q Consensus 224 l~~l~~L~~L~L~~n~ 239 (513)
+.++++|+.||+|...
T Consensus 216 LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 216 LFNLKKLRVLDISRDK 231 (699)
T ss_pred HhcccCCCeeeccccc
Confidence 3445555555555433
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.62 E-value=1.7e-05 Score=82.74 Aligned_cols=141 Identities=20% Similarity=0.203 Sum_probs=97.0
Q ss_pred CCCCCEEeccCCcCccCCCccccCCCCeEEeccCCcccc-CCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcC
Q 041374 330 LVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLG-NCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLL 408 (513)
Q Consensus 330 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~-~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l 408 (513)
-.+|++|+++|..... ..+|..++ .+|+|++|.+++-.+..+--..++...+.|..||+|+.++
T Consensus 121 r~nL~~LdI~G~~~~s---------------~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI 185 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFS---------------NGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI 185 (699)
T ss_pred HHhhhhcCccccchhh---------------ccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc
Confidence 3578888888843321 11222232 3688999999887765444455667777789999999888
Q ss_pred cccCCccccCCCCCCEEeCCCCccCc-cCCccccCCCCCCEEeCCCCccccc------ccccccCCCCCCEEECCCCCCC
Q 041374 409 TGSIPTEVGNLKNLVQLDLSENHFSI-EIPVSLSACTTLEYLYMEGNSVTGS------IPLALNTLKSIKELDLSRNNLS 481 (513)
Q Consensus 409 ~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~L~l~~n~l~ 481 (513)
+.. ..++++++|+.|.+.+-.+.. ..-..+..+++|+.||+|..+.... -.+.-..+|+|+.||.+++.++
T Consensus 186 ~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 186 SNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred cCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 743 567888999999888877763 2224567889999999998765422 1223345889999999999887
Q ss_pred cccchh
Q 041374 482 GHIPEF 487 (513)
Q Consensus 482 ~~~p~~ 487 (513)
+.+-+.
T Consensus 264 ~~~le~ 269 (699)
T KOG3665|consen 264 EEILEE 269 (699)
T ss_pred HHHHHH
Confidence 665554
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.26 E-value=0.00051 Score=58.40 Aligned_cols=124 Identities=19% Similarity=0.079 Sum_probs=83.7
Q ss_pred CCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCC
Q 041374 373 LMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYME 452 (513)
Q Consensus 373 L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 452 (513)
=+.+++.+.++. . -+.+.........+|+++|.+-. ...+..++.|.+|.+.+|+|+...|.--..+++|+.|.+.
T Consensus 21 e~e~~LR~lkip-~-ienlg~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIP-V-IENLGATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred cccccccccccc-c-hhhccccccccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 345667766653 1 12233333344778999998852 2356678899999999999996666555567889999999
Q ss_pred CCccccc-ccccccCCCCCCEEECCCCCCCcccc---hhhhcccCc-eEEccC
Q 041374 453 GNSVTGS-IPLALNTLKSIKELDLSRNNLSGHIP---EFLENLSFN-KMNETI 500 (513)
Q Consensus 453 ~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p---~~l~~l~~l-~l~l~~ 500 (513)
+|.|... .-..+..+++|+.|.+-+|+++.--- ..+..++++ .+|...
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 9987632 12346678899999999998863211 134567777 777654
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.22 E-value=0.0011 Score=54.06 Aligned_cols=83 Identities=20% Similarity=0.227 Sum_probs=30.4
Q ss_pred ccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCC
Q 041374 126 SIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPN 205 (513)
Q Consensus 126 ~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~ 205 (513)
.|.++++|+.+.+.. .+.......|..+++|+.+.+..+ +.......|.++.+++.+.+.+ .+. .++...+..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccccc
Confidence 344555555555542 343333344555555555555543 4433333444444444444432 222 233333323444
Q ss_pred CCEEEcc
Q 041374 206 LEDLSVR 212 (513)
Q Consensus 206 L~~L~l~ 212 (513)
|+.+.+.
T Consensus 83 l~~i~~~ 89 (129)
T PF13306_consen 83 LKNIDIP 89 (129)
T ss_dssp ECEEEET
T ss_pred ccccccC
Confidence 5555543
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.98 E-value=0.00046 Score=61.23 Aligned_cols=59 Identities=19% Similarity=0.259 Sum_probs=26.8
Q ss_pred CCCCEEEeecCcccccCccccCCCCCCCEEEcccc--cCCccCcccccCCCCCcEEeCCCCcC
Q 041374 131 SALQNIDIAGNRLHSRVPESLGQLRSLSFLDISEN--AFSGMFHSSIFNISSLELIYPLENRL 191 (513)
Q Consensus 131 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~l~~n~l 191 (513)
..|+.|.+.+..++.. ..|..+++|++|.++.| ++.+..+-....+++|+++++++|++
T Consensus 43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred cchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 3444444444444432 23455566666666666 33333222222334444444444444
No 64
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.91 E-value=4e-05 Score=71.97 Aligned_cols=85 Identities=15% Similarity=0.155 Sum_probs=44.9
Q ss_pred CCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCccc-ccCcccc-CCCCCCCEEEccccc-CCccCcccc-
Q 041374 100 SFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLH-SRVPESL-GQLRSLSFLDISENA-FSGMFHSSI- 175 (513)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~-~~~p~~l-~~l~~L~~L~Ls~n~-i~~~~~~~~- 175 (513)
..|+.|.+.++.-.+.- .+-..-..+++++.|++.++... ...-.++ ..+++|+++++..|. ++...-..+
T Consensus 138 g~lk~LSlrG~r~v~~s-----slrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la 212 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDS-----SLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA 212 (483)
T ss_pred cccccccccccccCCcc-----hhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH
Confidence 35777788777544321 22233456788888887777532 2111122 246778888887743 343322211
Q ss_pred cCCCCCcEEeCCCC
Q 041374 176 FNISSLELIYPLEN 189 (513)
Q Consensus 176 ~~l~~L~~L~l~~n 189 (513)
..+++|++++++++
T Consensus 213 ~gC~kL~~lNlSwc 226 (483)
T KOG4341|consen 213 EGCRKLKYLNLSWC 226 (483)
T ss_pred HhhhhHHHhhhccC
Confidence 23455555555544
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.76 E-value=0.0041 Score=50.57 Aligned_cols=119 Identities=18% Similarity=0.267 Sum_probs=53.8
Q ss_pred ccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCC
Q 041374 367 LGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTL 446 (513)
Q Consensus 367 l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 446 (513)
+..+++|+.+.+.. .+. .++...+.....++.+.+.++ +.......+..+++++.+.+.+ .+.......|..+++|
T Consensus 8 F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 45566777777664 333 455555555544577777664 4434444566666777777765 3332334456667777
Q ss_pred CEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhccc
Q 041374 447 EYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLS 492 (513)
Q Consensus 447 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 492 (513)
+.+++..+ +.......|.++ .|+.+.+.+ .+.......|.+.+
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~ 126 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCT 126 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG---
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccc
Confidence 77777654 443444556665 777777665 33333344555444
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=8.6e-05 Score=66.08 Aligned_cols=89 Identities=21% Similarity=0.203 Sum_probs=59.6
Q ss_pred CCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCcccccccccc-ccccCCCCCcE
Q 041374 178 ISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVK-IDFNRLPNLFR 256 (513)
Q Consensus 178 l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~ 256 (513)
+.+.+.|++.++.+. .+ .+...|+.|+.|.|+-|+++.. +.+..+++|++|+|..|.|..... ..+.++|+|+.
T Consensus 18 l~~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 344556666666655 22 3444688888888888888733 246778888888888888764321 23567888888
Q ss_pred EEcCCCCCCCCCCCC
Q 041374 257 LNFGKNNLGTGAIGD 271 (513)
Q Consensus 257 L~L~~n~~~~~~~~~ 271 (513)
|+|..|...+.....
T Consensus 93 LWL~ENPCc~~ag~n 107 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQN 107 (388)
T ss_pred HhhccCCcccccchh
Confidence 888888776655443
No 67
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.55 E-value=0.00018 Score=67.80 Aligned_cols=270 Identities=17% Similarity=0.105 Sum_probs=122.8
Q ss_pred CCCCeeeCcccccccccc--ccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCccccccccccc-ccCCcCchhhhc
Q 041374 228 SNLQLLDLSLNHFSGQVK--IDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTN-IFGGVLPLSIAN 304 (513)
Q Consensus 228 ~~L~~L~L~~n~~~~~~~--~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n-~~~~~~~~~~~~ 304 (513)
..|+.|.+.|+.-.+.-+ ..-...|++++|.+.++....+ -.....-..|+.++.+++..+ .++......+..
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd----~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITD----SSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE 213 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccH----HHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence 347777777765432222 2234678888888888753221 112233356788888888773 333333333333
Q ss_pred cccccceEEecccc-ceec-CCccccCCCCCCEEeccCCcCcc-CC----CccccCCCCeE------EeccCCcc-ccCC
Q 041374 305 LSSTIILFTMGLNQ-IYGT-IPPEVKNLVNLNGFGLEYNQLTG-PI----PHAIGELRNLQ------LRGNVPSS-LGNC 370 (513)
Q Consensus 305 ~~~~l~~l~l~~~~-~~~~-~~~~~~~~~~L~~L~l~~n~~~~-~~----~~~~~~l~~L~------l~~~~~~~-l~~~ 370 (513)
--..+++++++++. +.+. +-.....+..++.+...||.=.+ .. ......+.+++ ++..-... -..+
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c 293 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC 293 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence 22336666666653 2221 11112233334444444331110 00 00000111111 11100000 1235
Q ss_pred CCCCEEecccCcC-cccChHHHHhhhcccceEEccCCc-CcccCCccc-cCCCCCCEEeCCCCccCc--cCCccccCCCC
Q 041374 371 QNLMLLSVSNNKL-TGALPPQILGILTLSILLDLSGNL-LTGSIPTEV-GNLKNLVQLDLSENHFSI--EIPVSLSACTT 445 (513)
Q Consensus 371 ~~L~~L~ls~n~l-~~~~p~~~~~~~~~l~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~ 445 (513)
..|++|+.+++.- .+..-..+......|+.+-++.++ +++.....+ .+++.|+.+++.++.... .+..--.+++.
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR 373 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence 5666666666533 222333444445555666666664 332221122 245666666666664321 11122245667
Q ss_pred CCEEeCCCCcccccc-----cccccCCCCCCEEECCCCCC-CcccchhhhcccCc-eEEccCC
Q 041374 446 LEYLYMEGNSVTGSI-----PLALNTLKSIKELDLSRNNL-SGHIPEFLENLSFN-KMNETIN 501 (513)
Q Consensus 446 L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l-~~~~p~~l~~l~~l-~l~l~~n 501 (513)
|+++.+++|...... ...-+.+..|..+.+++++. +...-+.+..+..| .+++-.+
T Consensus 374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 777777766543111 12223455667777777663 33333334444445 5555444
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.37 E-value=0.0017 Score=57.76 Aligned_cols=82 Identities=29% Similarity=0.345 Sum_probs=47.9
Q ss_pred ceEEccCCcCcccCCccccCCCCCCEEeCCCC--ccCccCCccccCCCCCCEEeCCCCcccc-cccccccCCCCCCEEEC
Q 041374 399 ILLDLSGNLLTGSIPTEVGNLKNLVQLDLSEN--HFSIEIPVSLSACTTLEYLYMEGNSVTG-SIPLALNTLKSIKELDL 475 (513)
Q Consensus 399 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l 475 (513)
+.+++.+..++. ...+..+|+|++|+++.| .+.+.++.-...+++|+++++++|++.. .--..+..+.+|..||+
T Consensus 46 e~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl 123 (260)
T KOG2739|consen 46 ELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDL 123 (260)
T ss_pred hhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhc
Confidence 445555555541 123445667777777777 5554455444555777777777777762 11122344566777777
Q ss_pred CCCCCCc
Q 041374 476 SRNNLSG 482 (513)
Q Consensus 476 ~~n~l~~ 482 (513)
.+|..++
T Consensus 124 ~n~~~~~ 130 (260)
T KOG2739|consen 124 FNCSVTN 130 (260)
T ss_pred ccCCccc
Confidence 7776553
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.02 E-value=0.00033 Score=62.45 Aligned_cols=86 Identities=27% Similarity=0.246 Sum_probs=65.7
Q ss_pred ccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccc-cccccCCCCCCEEEC
Q 041374 397 LSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSI-PLALNTLKSIKELDL 475 (513)
Q Consensus 397 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l 475 (513)
..++|++.+|.++++ .....|+.|+.|.|+-|.++. ...+..|++|++|+|..|.|.... -..+.++++|+.|+|
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 347889999988743 234578999999999999873 234678899999999999887432 234678899999999
Q ss_pred CCCCCCcccch
Q 041374 476 SRNNLSGHIPE 486 (513)
Q Consensus 476 ~~n~l~~~~p~ 486 (513)
..|+=+|.-+.
T Consensus 96 ~ENPCc~~ag~ 106 (388)
T KOG2123|consen 96 DENPCCGEAGQ 106 (388)
T ss_pred ccCCcccccch
Confidence 99987766654
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.67 E-value=0.0038 Score=32.87 Aligned_cols=12 Identities=58% Similarity=0.786 Sum_probs=5.3
Q ss_pred CCEEECCCCCCC
Q 041374 470 IKELDLSRNNLS 481 (513)
Q Consensus 470 L~~L~l~~n~l~ 481 (513)
|++||+++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.38 E-value=0.0066 Score=31.93 Aligned_cols=19 Identities=53% Similarity=0.892 Sum_probs=9.7
Q ss_pred CCEEeCCCCccccccccccc
Q 041374 446 LEYLYMEGNSVTGSIPLALN 465 (513)
Q Consensus 446 L~~L~L~~n~l~~~~~~~~~ 465 (513)
|++|||++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4444443
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.31 E-value=0.0053 Score=62.69 Aligned_cols=89 Identities=21% Similarity=0.193 Sum_probs=39.6
Q ss_pred cCCCCCCCEEEeecC-cccccC----ccccCCCCCCCEEEccccc-CCccCcccccC-CCCCcEEeCCCCc-CcccCCcc
Q 041374 127 IGNLSALQNIDIAGN-RLHSRV----PESLGQLRSLSFLDISENA-FSGMFHSSIFN-ISSLELIYPLENR-LEGSLPVN 198 (513)
Q Consensus 127 ~~~l~~L~~L~l~~n-~l~~~~----p~~l~~l~~L~~L~Ls~n~-i~~~~~~~~~~-l~~L~~L~l~~n~-l~~~lp~~ 198 (513)
...+++|+.|+++++ ...... ......+++|+.|+++++. +++..-..+.. +++|+.|.+..+. +++.--..
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~ 289 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS 289 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence 345566666666552 111111 1122334556666666655 44333333322 4555555544444 33222222
Q ss_pred ccCCCCCCCEEEccCCc
Q 041374 199 IGFSLPNLEDLSVRQNN 215 (513)
Q Consensus 199 ~~~~l~~L~~L~l~~n~ 215 (513)
+...++.|++|++++|.
T Consensus 290 i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 290 IAERCPSLRELDLSGCH 306 (482)
T ss_pred HHHhcCcccEEeeecCc
Confidence 33344555555555554
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.87 E-value=0.00044 Score=69.14 Aligned_cols=126 Identities=23% Similarity=0.175 Sum_probs=62.9
Q ss_pred ccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChH----HHHhhhcccce
Q 041374 325 PEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPP----QILGILTLSIL 400 (513)
Q Consensus 325 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~----~~~~~~~~l~~ 400 (513)
..+.....++.++++.|.+.......++ -.++..+....+++.|.+++|.++..... .+......+..
T Consensus 166 ~~L~~~~~l~~l~l~~n~l~~~g~~~l~--------~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~e 237 (478)
T KOG4308|consen 166 AVLEKNEHLTELDLSLNGLIELGLLVLS--------QALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRE 237 (478)
T ss_pred HHHhcccchhHHHHHhcccchhhhHHHh--------hhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHH
Confidence 3444466677777777766411100000 00111222356777777877776522211 11222332345
Q ss_pred EEccCCcCcccC----CccccCC-CCCCEEeCCCCccCccCC----ccccCCCCCCEEeCCCCcccc
Q 041374 401 LDLSGNLLTGSI----PTEVGNL-KNLVQLDLSENHFSIEIP----VSLSACTTLEYLYMEGNSVTG 458 (513)
Q Consensus 401 L~l~~n~l~~~~----~~~~~~l-~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~L~~n~l~~ 458 (513)
+++.+|++.+.. ...+..+ +.+++++++.|.+..... ..+..+++++.+.+++|.+..
T Consensus 238 l~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 238 LDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 677777665431 2223333 455667777776664332 334455666666666666654
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.62 E-value=0.00023 Score=71.06 Aligned_cols=93 Identities=25% Similarity=0.351 Sum_probs=58.8
Q ss_pred CCCCCCEEEccCCcccccC----cccccCCCC-CCeeeCccccccccc----cccccCC-CCCcEEEcCCCCCCCCCCCC
Q 041374 202 SLPNLEDLSVRQNNYTGSL----PHSLSNASN-LQLLDLSLNHFSGQV----KIDFNRL-PNLFRLNFGKNNLGTGAIGD 271 (513)
Q Consensus 202 ~l~~L~~L~l~~n~l~~~~----~~~l~~l~~-L~~L~L~~n~~~~~~----~~~~~~l-~~L~~L~L~~n~~~~~~~~~ 271 (513)
...++++|.+++|.++... ...+...+. +.++++..|.+.+.. ...+..+ +.++.++++.|.++.....+
T Consensus 202 ~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~ 281 (478)
T KOG4308|consen 202 PLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRD 281 (478)
T ss_pred ccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHH
Confidence 3556888888888776221 123344455 677888888876442 2233444 66788888888887654432
Q ss_pred chhhcccCCCcccccccccccccCC
Q 041374 272 LDFIAHLTNCSKLEAFGLDTNIFGG 296 (513)
Q Consensus 272 ~~~~~~l~~~~~L~~L~l~~n~~~~ 296 (513)
....+..+++++.+.+++|.+..
T Consensus 282 --L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 282 --LAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred --HHHHHhhhHHHHHhhcccCcccc
Confidence 33556677788888888776654
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.66 E-value=0.07 Score=25.93 Aligned_cols=9 Identities=56% Similarity=0.811 Sum_probs=2.9
Q ss_pred CEEECCCCC
Q 041374 471 KELDLSRNN 479 (513)
Q Consensus 471 ~~L~l~~n~ 479 (513)
+.|++++|+
T Consensus 4 ~~L~l~~n~ 12 (17)
T PF13504_consen 4 RTLDLSNNR 12 (17)
T ss_dssp SEEEETSS-
T ss_pred CEEECCCCC
Confidence 333333333
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.57 E-value=0.0026 Score=55.39 Aligned_cols=83 Identities=20% Similarity=0.175 Sum_probs=65.8
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 155 (513)
.+++.||++.+++.. +...+..++.+..|+++.|++. -+|..++....++.+++..|+.+. .|.++.+.+
T Consensus 42 kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~--------~~~~d~~q~~e~~~~~~~~n~~~~-~p~s~~k~~ 111 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK--------FLPKDAKQQRETVNAASHKNNHSQ-QPKSQKKEP 111 (326)
T ss_pred ceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh--------hChhhHHHHHHHHHHHhhccchhh-CCccccccC
Confidence 678889988887654 3345666778888888888776 677788888888888888887766 788888889
Q ss_pred CCCEEEcccccCC
Q 041374 156 SLSFLDISENAFS 168 (513)
Q Consensus 156 ~L~~L~Ls~n~i~ 168 (513)
+++++++.++.++
T Consensus 112 ~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 112 HPKKNEQKKTEFF 124 (326)
T ss_pred CcchhhhccCcch
Confidence 9999998888765
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.29 E-value=0.016 Score=49.65 Aligned_cols=80 Identities=19% Similarity=0.184 Sum_probs=42.4
Q ss_pred ceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCC-ccc-cCCCCCCEEeCCCC-cccccccccccCCCCCCEEEC
Q 041374 399 ILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIP-VSL-SACTTLEYLYMEGN-SVTGSIPLALNTLKSIKELDL 475 (513)
Q Consensus 399 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~-~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l 475 (513)
+.+|-+++.|..+.-+.+..++.++.|.+.+|.--+... +.+ +-.++|+.|+|++| +|++.....+..+++|+.|.+
T Consensus 104 eaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l 183 (221)
T KOG3864|consen 104 EAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHL 183 (221)
T ss_pred EEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHh
Confidence 445555555554545555566666666666664321110 111 12356666666666 355555556666666666666
Q ss_pred CCC
Q 041374 476 SRN 478 (513)
Q Consensus 476 ~~n 478 (513)
.+=
T Consensus 184 ~~l 186 (221)
T KOG3864|consen 184 YDL 186 (221)
T ss_pred cCc
Confidence 543
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.77 E-value=0.028 Score=48.12 Aligned_cols=81 Identities=16% Similarity=0.065 Sum_probs=61.9
Q ss_pred CCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccc-ccccccc-CCCCCCEEECCCCC-CCcccchhhhcccCc-e
Q 041374 420 KNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTG-SIPLALN-TLKSIKELDLSRNN-LSGHIPEFLENLSFN-K 495 (513)
Q Consensus 420 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~-~l~~L~~L~l~~n~-l~~~~p~~l~~l~~l-~ 495 (513)
..++.+|-+++.+..+.-+.+..+++++.|.+.+|+--+ ..-+.+. -.++|+.|+|++|+ |+...-.++..++.| .
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 357899999999998888899999999999999996432 2222222 24799999999887 887777787777777 5
Q ss_pred EEccC
Q 041374 496 MNETI 500 (513)
Q Consensus 496 l~l~~ 500 (513)
+.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 55543
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.50 E-value=0.078 Score=28.43 Aligned_cols=15 Identities=33% Similarity=0.459 Sum_probs=6.1
Q ss_pred CCCCEEeCCCCcccc
Q 041374 444 TTLEYLYMEGNSVTG 458 (513)
Q Consensus 444 ~~L~~L~L~~n~l~~ 458 (513)
++|++|+|++|++++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 344444555444443
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.29 E-value=0.072 Score=28.57 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=9.5
Q ss_pred CCCCEEECCCCCCCcccchh
Q 041374 468 KSIKELDLSRNNLSGHIPEF 487 (513)
Q Consensus 468 ~~L~~L~l~~n~l~~~~p~~ 487 (513)
++|+.|+|++|+|++..+..
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 45566666666655444433
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.22 E-value=0.38 Score=26.26 Aligned_cols=14 Identities=57% Similarity=0.840 Sum_probs=8.8
Q ss_pred CCCCEEECCCCCCC
Q 041374 468 KSIKELDLSRNNLS 481 (513)
Q Consensus 468 ~~L~~L~l~~n~l~ 481 (513)
++|+.|+|++|+|.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45666666666665
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.22 E-value=0.38 Score=26.26 Aligned_cols=14 Identities=57% Similarity=0.840 Sum_probs=8.8
Q ss_pred CCCCEEECCCCCCC
Q 041374 468 KSIKELDLSRNNLS 481 (513)
Q Consensus 468 ~~L~~L~l~~n~l~ 481 (513)
++|+.|+|++|+|.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45666666666665
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.99 E-value=0.0069 Score=52.87 Aligned_cols=81 Identities=22% Similarity=0.235 Sum_probs=55.3
Q ss_pred cceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCC
Q 041374 398 SILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSR 477 (513)
Q Consensus 398 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 477 (513)
.+.||++.|++- .+-..+.-++.+..||++.|.+. ..|..+.....++.+++.+|... ..|.++...+.++.+++.+
T Consensus 44 ~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 44 VTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKK 120 (326)
T ss_pred eeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhcc
Confidence 366777777654 23334445566777777777776 66777777777777777777766 6777777777777777777
Q ss_pred CCCC
Q 041374 478 NNLS 481 (513)
Q Consensus 478 n~l~ 481 (513)
|.+.
T Consensus 121 ~~~~ 124 (326)
T KOG0473|consen 121 TEFF 124 (326)
T ss_pred Ccch
Confidence 7754
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.91 E-value=0.42 Score=26.08 Aligned_cols=21 Identities=48% Similarity=0.741 Sum_probs=14.9
Q ss_pred CCCCEEecccCcCcccChHHHH
Q 041374 371 QNLMLLSVSNNKLTGALPPQIL 392 (513)
Q Consensus 371 ~~L~~L~ls~n~l~~~~p~~~~ 392 (513)
++|+.|++++|++. .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 56778888888776 6666554
No 85
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.91 E-value=0.42 Score=26.08 Aligned_cols=21 Identities=48% Similarity=0.741 Sum_probs=14.9
Q ss_pred CCCCEEecccCcCcccChHHHH
Q 041374 371 QNLMLLSVSNNKLTGALPPQIL 392 (513)
Q Consensus 371 ~~L~~L~ls~n~l~~~~p~~~~ 392 (513)
++|+.|++++|++. .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 56778888888776 6666554
No 86
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=86.80 E-value=0.36 Score=49.20 Aligned_cols=111 Identities=29% Similarity=0.264 Sum_probs=63.5
Q ss_pred ccCCCCCCEEecccC-cCcccCh---HHHHhhhcccceEEccCCc-CcccCCccccC-CCCCCEEeCCCCc-cCccCCcc
Q 041374 367 LGNCQNLMLLSVSNN-KLTGALP---PQILGILTLSILLDLSGNL-LTGSIPTEVGN-LKNLVQLDLSENH-FSIEIPVS 439 (513)
Q Consensus 367 l~~~~~L~~L~ls~n-~l~~~~p---~~~~~~~~~l~~L~l~~n~-l~~~~~~~~~~-l~~L~~L~l~~n~-~~~~~~~~ 439 (513)
...++.|+.|+++++ ......+ ..+......++.++++.+. +++..-..+.. +++|+.|.+.+|. +++..-..
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~ 289 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS 289 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence 345788888888873 2221222 2233344556778888876 65444444433 7788888877776 45433322
Q ss_pred -ccCCCCCCEEeCCCCcccc-c-ccccccCCCCCCEEECCC
Q 041374 440 -LSACTTLEYLYMEGNSVTG-S-IPLALNTLKSIKELDLSR 477 (513)
Q Consensus 440 -~~~l~~L~~L~L~~n~l~~-~-~~~~~~~l~~L~~L~l~~ 477 (513)
...+++|++|++++|...+ . +......+++|+.+.+..
T Consensus 290 i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 290 IAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred HHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 3457778888888876531 1 222334455555544443
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=74.96 E-value=2.5 Score=23.18 Aligned_cols=14 Identities=36% Similarity=0.498 Sum_probs=8.5
Q ss_pred CCCCEEEcccccCC
Q 041374 155 RSLSFLDISENAFS 168 (513)
Q Consensus 155 ~~L~~L~Ls~n~i~ 168 (513)
++|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666654
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=71.41 E-value=26 Score=34.73 Aligned_cols=191 Identities=12% Similarity=-0.013 Sum_probs=85.2
Q ss_pred CCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcc----cCCccccCCCCCCCEEEccCCcccccCcccccC---
Q 041374 154 LRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEG----SLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSN--- 226 (513)
Q Consensus 154 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~----~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~--- 226 (513)
-+.+++++++.|.+....|-.+..-.+ -+.+..+.++. .++..- .-..+.+++++.|.....+|..+..
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p~~--pl~lr~c~lsskfis~l~~qs--g~~~lteldls~n~~Kddip~~~n~~a~ 239 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQPGN--PLSLRVCELSSKFISKLLIQS--GRLWLTELDLSTNGGKDDIPRTLNKKAG 239 (553)
T ss_pred cchhhhhccCCCcccccCCccccCCCC--ccchhhhhhhhhHHHHhhhhh--ccccccccccccCCCCccchhHHHHhhh
Confidence 356778888888776655543332111 03334443332 112111 1235677888888777666654322
Q ss_pred CCCCCeeeCccccccc---cccccccCCCCCcEEEcCCCCCCCCCC--CCchhhcccCCCcccccccccccccCCcCchh
Q 041374 227 ASNLQLLDLSLNHFSG---QVKIDFNRLPNLFRLNFGKNNLGTGAI--GDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLS 301 (513)
Q Consensus 227 l~~L~~L~L~~n~~~~---~~~~~~~~l~~L~~L~L~~n~~~~~~~--~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~ 301 (513)
-..++.++.++..+.- ..+...+..+++...+++.|..+.... +.-..-..++.-+++ +|++..+......+..
T Consensus 240 ~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks 318 (553)
T KOG4242|consen 240 TLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKS 318 (553)
T ss_pred hhhhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhh
Confidence 2235666665544421 112223444566666666654332111 101111223333444 5555555443322221
Q ss_pred h-hcc----ccccceEEecccccee-cCCccccCCCCCCEEeccCCcCccCCCc
Q 041374 302 I-ANL----SSTIILFTMGLNQIYG-TIPPEVKNLVNLNGFGLEYNQLTGPIPH 349 (513)
Q Consensus 302 ~-~~~----~~~l~~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 349 (513)
+ -.. +..-.++++..|...+ ..-+....-.++++++..+|+..++...
T Consensus 319 ~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~ 372 (553)
T KOG4242|consen 319 MLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGA 372 (553)
T ss_pred hhcccccccccccccCChhhccccccchhhccccceeeeEeecccccccccccc
Confidence 1 000 0001123333322221 1112223334578888888888766543
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=69.88 E-value=3.3 Score=22.65 Aligned_cols=17 Identities=53% Similarity=0.903 Sum_probs=10.3
Q ss_pred CCCEEECCCCCCCcccch
Q 041374 469 SIKELDLSRNNLSGHIPE 486 (513)
Q Consensus 469 ~L~~L~l~~n~l~~~~p~ 486 (513)
+|++|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4666667777665 4443
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=69.58 E-value=3 Score=23.25 Aligned_cols=13 Identities=62% Similarity=0.910 Sum_probs=7.0
Q ss_pred CCCEEECCCCCCC
Q 041374 469 SIKELDLSRNNLS 481 (513)
Q Consensus 469 ~L~~L~l~~n~l~ 481 (513)
+|++|||++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=50.13 E-value=7.4 Score=39.15 Aligned_cols=60 Identities=33% Similarity=0.335 Sum_probs=30.0
Q ss_pred ceEEccCCcCccc--CCccccCCCCCCEEeCCCCccCccCCcccc--CCCCCCEEeCCCCcccc
Q 041374 399 ILLDLSGNLLTGS--IPTEVGNLKNLVQLDLSENHFSIEIPVSLS--ACTTLEYLYMEGNSVTG 458 (513)
Q Consensus 399 ~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~L~~n~l~~ 458 (513)
..+++++|++... +...-...|+|+.|+|++|...-....++. ....|++|.+.+|++..
T Consensus 221 ~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 221 LSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred eeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 5667777766421 111112356777777777721111111221 22456677777776653
No 92
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=47.19 E-value=19 Score=27.21 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 041374 6 SITYLATSVWCFVLFLLDSHS 26 (513)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~ 26 (513)
+++++.+.+++++++++++..
T Consensus 3 SK~~llL~l~LA~lLlisSev 23 (95)
T PF07172_consen 3 SKAFLLLGLLLAALLLISSEV 23 (95)
T ss_pred hhHHHHHHHHHHHHHHHHhhh
Confidence 566666655555555554433
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=45.55 E-value=14 Score=37.37 Aligned_cols=67 Identities=24% Similarity=0.247 Sum_probs=45.0
Q ss_pred CCCCCCEEeCCCCccCcc--CCccccCCCCCCEEeCCCCcccccccccccCC--CCCCEEECCCCCCCccc
Q 041374 418 NLKNLVQLDLSENHFSIE--IPVSLSACTTLEYLYMEGNSVTGSIPLALNTL--KSIKELDLSRNNLSGHI 484 (513)
Q Consensus 418 ~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~ 484 (513)
+.+.+..+.+++|++... +..--..-++|+.|+|++|...-....++.++ ..|++|.+.+|+++...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccch
Confidence 567888999999988621 11112345899999999993322223334443 46899999999997543
No 94
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=43.91 E-value=17 Score=19.57 Aligned_cols=11 Identities=27% Similarity=0.344 Sum_probs=5.1
Q ss_pred CCCCEEeCCCC
Q 041374 444 TTLEYLYMEGN 454 (513)
Q Consensus 444 ~~L~~L~L~~n 454 (513)
++|+.|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34444444444
No 95
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=29.20 E-value=2.5e+02 Score=28.26 Aligned_cols=108 Identities=17% Similarity=0.073 Sum_probs=54.0
Q ss_pred CcEEEEEcCCCCCccccCccccC--CCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGN--LSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQ 153 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~ 153 (513)
.+++.++++.|.+....+..+.. ++ +.++.+..+...- ..++. -+.=..+.+++++.|.....+|..+..
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~p----l~lr~c~lsskfi---s~l~~-qsg~~~lteldls~n~~Kddip~~~n~ 236 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGNP----LSLRVCELSSKFI---SKLLI-QSGRLWLTELDLSTNGGKDDIPRTLNK 236 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCCc----cchhhhhhhhhHH---HHhhh-hhccccccccccccCCCCccchhHHHH
Confidence 56788899988887665544332 22 4444444432100 01111 011235667777777766656554332
Q ss_pred C---CCCCEEEcccccCCcc---CcccccCCCCCcEEeCCCCcC
Q 041374 154 L---RSLSFLDISENAFSGM---FHSSIFNISSLELIYPLENRL 191 (513)
Q Consensus 154 l---~~L~~L~Ls~n~i~~~---~~~~~~~l~~L~~L~l~~n~l 191 (513)
+ .-++.++.++..+... .+-..+.-+.++..+++.|..
T Consensus 237 ~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 237 KAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred hhhhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 1 3456666666554311 122233445666666665543
No 96
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=23.56 E-value=1.2e+02 Score=26.92 Aligned_cols=13 Identities=23% Similarity=0.286 Sum_probs=5.5
Q ss_pred CCCEEeCCCCccC
Q 041374 421 NLVQLDLSENHFS 433 (513)
Q Consensus 421 ~L~~L~l~~n~~~ 433 (513)
+|+--++.++.+.
T Consensus 217 NLeganLkG~~~e 229 (302)
T KOG1665|consen 217 NLEGANLKGADME 229 (302)
T ss_pred ccccccccccccc
Confidence 3444444444443
No 97
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.65 E-value=56 Score=40.23 Aligned_cols=32 Identities=22% Similarity=0.207 Sum_probs=26.8
Q ss_pred eCCCCccCccCCccccCCCCCCEEeCCCCccc
Q 041374 426 DLSENHFSIEIPVSLSACTTLEYLYMEGNSVT 457 (513)
Q Consensus 426 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 457 (513)
||++|+|...-+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68899998555567888999999999999876
Done!