Query 041374
Match_columns 513
No_of_seqs 363 out of 4147
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 10:39:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041374.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041374hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 5.1E-61 1.7E-65 513.8 38.5 478 27-510 4-723 (768)
2 4eco_A Uncharacterized protein 100.0 5.2E-53 1.8E-57 441.8 27.5 440 31-504 26-600 (636)
3 4ecn_A Leucine-rich repeat pro 100.0 2.5E-51 8.6E-56 435.8 30.4 437 30-505 264-841 (876)
4 3rgz_A Protein brassinosteroid 100.0 3.2E-50 1.1E-54 430.3 28.4 422 76-506 223-743 (768)
5 3t6q_A CD180 antigen; protein- 100.0 1.3E-47 4.5E-52 401.1 37.8 437 57-509 3-541 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 5.1E-45 1.7E-49 381.5 34.2 419 76-510 32-539 (606)
7 3t6q_A CD180 antigen; protein- 100.0 2.7E-44 9.2E-49 376.0 35.6 415 76-508 57-564 (606)
8 1ziw_A TOLL-like receptor 3; i 100.0 1.5E-43 5.2E-48 375.2 37.8 418 76-508 25-577 (680)
9 2z63_A TOLL-like receptor 4, v 100.0 1.2E-43 4E-48 368.7 31.5 421 76-510 28-537 (570)
10 3j0a_A TOLL-like receptor 5; m 100.0 8.4E-44 2.9E-48 384.5 30.0 437 64-512 14-547 (844)
11 1ziw_A TOLL-like receptor 3; i 100.0 1.1E-42 3.9E-47 368.6 37.0 424 76-508 49-626 (680)
12 4eco_A Uncharacterized protein 100.0 1.6E-43 5.3E-48 370.2 24.3 380 100-512 81-586 (636)
13 2z81_A CD282 antigen, TOLL-lik 100.0 1.7E-43 5.9E-48 365.6 24.0 411 76-508 26-514 (549)
14 3vq2_A TLR4, TOLL-like recepto 100.0 2.7E-42 9.3E-47 360.8 31.6 409 76-509 56-563 (606)
15 4ecn_A Leucine-rich repeat pro 100.0 2.6E-42 9E-47 366.7 26.6 378 100-512 323-826 (876)
16 2z63_A TOLL-like receptor 4, v 100.0 5.9E-41 2E-45 348.3 31.8 393 100-512 28-515 (570)
17 3v47_A TOLL-like receptor 5B a 100.0 7E-41 2.4E-45 337.8 30.4 374 100-509 30-413 (455)
18 3j0a_A TOLL-like receptor 5; m 100.0 3.5E-41 1.2E-45 364.1 28.9 412 77-508 74-564 (844)
19 2z7x_B TOLL-like receptor 1, v 100.0 6.2E-41 2.1E-45 343.9 28.0 408 79-508 3-485 (520)
20 1ogq_A PGIP-2, polygalacturona 100.0 2.4E-40 8.1E-45 315.9 21.5 293 31-342 2-302 (313)
21 2z81_A CD282 antigen, TOLL-lik 100.0 1.5E-39 5E-44 336.2 27.9 415 63-512 3-494 (549)
22 4g8a_A TOLL-like receptor 4; l 100.0 3.4E-38 1.2E-42 331.9 32.1 414 76-505 52-581 (635)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.5E-38 8.6E-43 327.3 27.8 407 78-508 33-514 (562)
24 2z7x_B TOLL-like receptor 1, v 100.0 3E-38 1E-42 324.0 27.1 387 76-485 21-485 (520)
25 1jl5_A Outer protein YOPM; leu 100.0 3.7E-38 1.3E-42 315.4 25.1 376 76-512 11-419 (454)
26 3bz5_A Internalin-J, INLJ; leu 100.0 2.2E-37 7.6E-42 310.1 25.9 345 76-512 42-395 (457)
27 1o6v_A Internalin A; bacterial 100.0 2.7E-36 9.4E-41 304.5 31.5 344 76-482 46-389 (466)
28 3v47_A TOLL-like receptor 5B a 100.0 1.4E-36 4.7E-41 306.4 27.8 346 131-511 30-391 (455)
29 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 9.8E-37 3.3E-41 315.3 26.9 388 76-486 52-515 (562)
30 1o6v_A Internalin A; bacterial 100.0 1.4E-35 4.7E-40 299.4 29.6 345 98-505 44-389 (466)
31 3o6n_A APL1; leucine-rich repe 100.0 9E-36 3.1E-40 294.0 26.4 350 54-483 3-354 (390)
32 2id5_A Lingo-1, leucine rich r 100.0 1.5E-35 5.1E-40 300.5 28.3 303 132-483 33-335 (477)
33 1jl5_A Outer protein YOPM; leu 100.0 2.7E-35 9.1E-40 294.7 24.1 372 76-511 34-436 (454)
34 4g8a_A TOLL-like receptor 4; l 100.0 2.3E-34 8E-39 302.6 30.4 394 76-482 76-581 (635)
35 3oja_B Anopheles plasmodium-re 100.0 1.7E-34 5.8E-39 300.1 28.5 312 98-484 49-361 (597)
36 2id5_A Lingo-1, leucine rich r 100.0 5.7E-34 2E-38 288.8 28.8 334 100-490 32-365 (477)
37 3bz5_A Internalin-J, INLJ; leu 100.0 4.8E-34 1.6E-38 285.9 24.5 372 76-511 64-450 (457)
38 4fmz_A Internalin; leucine ric 100.0 1.5E-32 5.3E-37 266.6 30.1 305 97-504 41-346 (347)
39 4fmz_A Internalin; leucine ric 100.0 2.1E-31 7.3E-36 258.5 29.9 303 76-481 44-346 (347)
40 3o6n_A APL1; leucine-rich repe 100.0 1.9E-31 6.6E-36 263.0 27.3 310 76-459 45-354 (390)
41 4fcg_A Uncharacterized protein 100.0 1.1E-32 3.7E-37 264.4 15.2 271 30-344 22-314 (328)
42 3oja_B Anopheles plasmodium-re 100.0 9E-31 3.1E-35 272.1 27.8 333 52-434 7-359 (597)
43 1xku_A Decorin; proteoglycan, 100.0 3.9E-30 1.3E-34 247.6 29.4 130 131-264 52-183 (330)
44 2ft3_A Biglycan; proteoglycan, 100.0 2.6E-30 8.7E-35 249.1 27.5 127 101-241 34-160 (332)
45 1xku_A Decorin; proteoglycan, 100.0 5.8E-30 2E-34 246.4 29.2 291 131-502 31-330 (330)
46 1ogq_A PGIP-2, polygalacturona 100.0 8.8E-32 3E-36 256.6 16.0 164 323-506 141-307 (313)
47 1z7x_W Ribonuclease inhibitor; 100.0 1.4E-34 5E-39 292.2 -3.7 371 76-483 3-413 (461)
48 2ft3_A Biglycan; proteoglycan, 100.0 2.2E-30 7.5E-35 249.5 25.4 290 131-502 33-331 (332)
49 1z7x_W Ribonuclease inhibitor; 100.0 2.1E-34 7.1E-39 291.0 -4.6 341 152-506 25-413 (461)
50 2z80_A TOLL-like receptor 2, v 100.0 1.8E-28 6.3E-33 238.2 19.6 179 59-260 25-206 (353)
51 2z66_A Variable lymphocyte rec 100.0 1.9E-28 6.5E-33 233.3 12.8 255 61-346 4-263 (306)
52 3ogk_B Coronatine-insensitive 100.0 4.6E-30 1.6E-34 267.6 -0.3 433 64-508 42-530 (592)
53 4fcg_A Uncharacterized protein 99.9 4.6E-27 1.6E-31 225.2 19.9 231 179-478 81-311 (328)
54 3g06_A SSPH2 (leucine-rich rep 99.9 9.7E-27 3.3E-31 239.7 20.6 158 53-241 11-174 (622)
55 3g06_A SSPH2 (leucine-rich rep 99.9 1.8E-25 6.3E-30 230.2 29.4 269 100-492 40-308 (622)
56 2z66_A Variable lymphocyte rec 99.9 3.7E-26 1.3E-30 217.4 20.5 250 103-386 10-263 (306)
57 3ogk_B Coronatine-insensitive 99.9 1.6E-29 5.6E-34 263.4 -3.1 401 76-494 73-540 (592)
58 3zyi_A Leucine-rich repeat-con 99.9 1.1E-25 3.8E-30 226.1 24.4 236 194-481 68-303 (452)
59 3zyj_A Leucine-rich repeat-con 99.9 1.3E-25 4.3E-30 224.8 24.7 247 182-481 46-292 (440)
60 3o53_A Protein LRIM1, AGAP0063 99.9 2E-27 6.8E-32 227.1 8.5 247 202-509 32-281 (317)
61 2z80_A TOLL-like receptor 2, v 99.9 2.1E-26 7.2E-31 223.7 15.9 256 205-485 53-318 (353)
62 1ozn_A Reticulon 4 receptor; N 99.9 1.3E-25 4.5E-30 211.3 20.7 224 182-481 14-238 (285)
63 1ozn_A Reticulon 4 receptor; N 99.9 4.6E-26 1.6E-30 214.4 17.5 207 76-296 32-239 (285)
64 3zyi_A Leucine-rich repeat-con 99.9 5.4E-25 1.8E-29 221.0 25.3 228 100-384 75-303 (452)
65 3zyj_A Leucine-rich repeat-con 99.9 7.7E-25 2.6E-29 219.1 25.0 205 100-345 64-269 (440)
66 1wwl_A Monocyte differentiatio 99.9 2.5E-27 8.4E-32 225.9 1.3 268 54-344 21-309 (312)
67 1wwl_A Monocyte differentiatio 99.9 2.7E-26 9.2E-31 218.7 7.0 252 175-481 39-309 (312)
68 2o6q_A Variable lymphocyte rec 99.9 4.7E-24 1.6E-28 198.8 21.3 219 61-298 2-221 (270)
69 3o53_A Protein LRIM1, AGAP0063 99.9 7.5E-26 2.6E-30 216.1 9.4 259 77-405 11-271 (317)
70 2p1m_B Transport inhibitor res 99.9 1.3E-27 4.6E-32 249.1 -4.8 407 95-505 61-520 (594)
71 3oja_A Leucine-rich immune mol 99.9 1.1E-24 3.7E-29 220.0 14.2 235 204-499 34-270 (487)
72 2p1m_B Transport inhibitor res 99.9 5.9E-27 2E-31 244.2 -6.0 408 76-501 66-541 (594)
73 3oja_A Leucine-rich immune mol 99.9 3.8E-24 1.3E-28 216.0 13.3 222 94-344 28-250 (487)
74 2o6q_A Variable lymphocyte rec 99.9 1.4E-22 4.7E-27 188.8 21.6 206 54-268 4-221 (270)
75 3rfs_A Internalin B, repeat mo 99.9 6.1E-23 2.1E-27 191.4 18.7 207 76-307 41-247 (272)
76 2z62_A TOLL-like receptor 4, v 99.9 1.7E-22 5.7E-27 189.1 18.7 207 77-298 29-240 (276)
77 2z62_A TOLL-like receptor 4, v 99.9 2.7E-22 9.1E-27 187.7 19.1 158 100-265 28-190 (276)
78 3m19_A Variable lymphocyte rec 99.9 5.3E-22 1.8E-26 182.7 18.6 192 62-267 3-194 (251)
79 3goz_A Leucine-rich repeat-con 99.9 1.3E-24 4.5E-29 211.5 0.9 265 159-459 2-299 (362)
80 3rfs_A Internalin B, repeat mo 99.9 3.3E-22 1.1E-26 186.4 16.5 209 95-329 36-244 (272)
81 1p9a_G Platelet glycoprotein I 99.9 1.8E-21 6.2E-26 182.8 21.4 157 96-266 6-162 (290)
82 2xwt_C Thyrotropin receptor; s 99.9 9.6E-22 3.3E-26 179.7 14.4 177 77-265 32-218 (239)
83 2ca6_A RAN GTPase-activating p 99.9 2.6E-23 8.8E-28 204.5 4.2 257 219-508 23-320 (386)
84 2ast_B S-phase kinase-associat 99.9 1.2E-23 4.1E-28 202.9 1.4 211 63-293 36-258 (336)
85 3goz_A Leucine-rich repeat-con 99.9 8.9E-23 3E-27 198.6 5.9 267 183-485 2-301 (362)
86 2ast_B S-phase kinase-associat 99.9 2.2E-22 7.4E-27 194.1 7.6 255 205-512 48-314 (336)
87 1p9a_G Platelet glycoprotein I 99.9 8.5E-21 2.9E-25 178.2 17.6 203 248-481 6-208 (290)
88 4glp_A Monocyte differentiatio 99.9 5E-21 1.7E-25 182.1 14.9 141 324-482 162-308 (310)
89 2ca6_A RAN GTPase-activating p 99.8 6.5E-23 2.2E-27 201.6 0.8 171 92-265 24-229 (386)
90 3m19_A Variable lymphocyte rec 99.8 4.3E-20 1.5E-24 170.0 19.4 181 100-297 14-194 (251)
91 4glp_A Monocyte differentiatio 99.8 3.6E-21 1.2E-25 183.0 10.7 226 76-321 64-308 (310)
92 2o6s_A Variable lymphocyte rec 99.8 2.9E-20 1E-24 166.0 14.9 177 60-266 3-179 (208)
93 2xwt_C Thyrotropin receptor; s 99.8 4.4E-20 1.5E-24 168.6 15.5 150 101-262 32-189 (239)
94 1h6u_A Internalin H; cell adhe 99.8 6.4E-20 2.2E-24 174.0 17.0 167 77-265 42-208 (308)
95 1h6u_A Internalin H; cell adhe 99.8 1.2E-19 4E-24 172.2 18.2 195 96-321 37-231 (308)
96 2o6s_A Variable lymphocyte rec 99.8 1.7E-19 5.7E-24 161.0 17.4 181 103-307 10-190 (208)
97 3cvr_A Invasion plasmid antige 99.8 4.6E-20 1.6E-24 187.7 15.1 208 56-307 35-255 (571)
98 4ay9_X Follicle-stimulating ho 99.8 5.4E-19 1.8E-23 171.0 18.0 105 156-260 31-136 (350)
99 4ay9_X Follicle-stimulating ho 99.8 4.3E-19 1.5E-23 171.7 16.3 197 62-266 7-216 (350)
100 3e6j_A Variable lymphocyte rec 99.8 9.5E-19 3.2E-23 158.3 17.5 161 56-240 11-171 (229)
101 2v9t_B SLIT homolog 2 protein 99.8 2.2E-18 7.4E-23 154.9 16.6 134 132-266 33-166 (220)
102 3cvr_A Invasion plasmid antige 99.8 3.5E-18 1.2E-22 173.8 18.1 68 420-492 180-254 (571)
103 2v70_A SLIT-2, SLIT homolog 2 99.8 2.6E-18 9E-23 154.3 14.7 136 372-507 33-169 (220)
104 2v70_A SLIT-2, SLIT homolog 2 99.8 8.7E-18 3E-22 150.9 16.1 152 80-241 15-166 (220)
105 1h6t_A Internalin B; cell adhe 99.8 4.5E-18 1.5E-22 159.8 14.5 150 127-295 64-213 (291)
106 1h6t_A Internalin B; cell adhe 99.8 7E-18 2.4E-22 158.5 15.8 171 76-268 46-216 (291)
107 2xot_A Amphoterin-induced prot 99.7 6.6E-18 2.3E-22 164.0 13.8 175 81-266 23-203 (361)
108 2v9t_B SLIT homolog 2 protein 99.7 1.6E-17 5.4E-22 149.2 14.6 132 372-504 33-165 (220)
109 4ezg_A Putative uncharacterize 99.7 6.5E-18 2.2E-22 149.1 11.5 153 97-265 41-194 (197)
110 1m9s_A Internalin B; cell inva 99.7 2E-17 6.9E-22 170.2 16.6 170 76-267 43-212 (605)
111 2xot_A Amphoterin-induced prot 99.7 2.6E-17 9E-22 159.7 14.7 178 103-297 21-204 (361)
112 4ezg_A Putative uncharacterize 99.7 1.9E-17 6.5E-22 146.2 12.5 151 76-242 44-195 (197)
113 3e6j_A Variable lymphocyte rec 99.7 6.4E-17 2.2E-21 146.3 15.7 156 309-485 21-176 (229)
114 4b8c_D Glucose-repressible alc 99.7 2.7E-18 9.3E-23 181.1 6.1 204 32-248 129-336 (727)
115 1xeu_A Internalin C; cellular 99.7 2.3E-17 7.7E-22 152.5 11.4 167 78-267 21-187 (263)
116 1m9s_A Internalin B; cell inva 99.7 8.8E-17 3E-21 165.4 16.7 174 96-297 39-212 (605)
117 1w8a_A SLIT protein; signaling 99.7 1.2E-16 4.2E-21 140.2 11.4 133 334-485 11-143 (192)
118 1xeu_A Internalin C; cellular 99.7 3.2E-17 1.1E-21 151.5 7.0 171 98-297 17-187 (263)
119 1dce_A Protein (RAB geranylger 99.7 8.1E-19 2.8E-23 179.5 -5.1 106 398-508 443-550 (567)
120 4b8c_D Glucose-repressible alc 99.7 4.6E-17 1.6E-21 171.7 6.8 142 366-512 219-362 (727)
121 1dce_A Protein (RAB geranylger 99.7 9.4E-19 3.2E-23 179.0 -6.7 84 399-485 466-550 (567)
122 1w8a_A SLIT protein; signaling 99.6 1.4E-15 4.9E-20 133.3 13.8 86 101-192 30-115 (192)
123 2ell_A Acidic leucine-rich nuc 99.6 1.2E-15 4E-20 131.0 11.3 137 371-511 24-166 (168)
124 3sb4_A Hypothetical leucine ri 99.6 3E-16 1E-20 150.3 7.2 103 370-475 225-328 (329)
125 2ell_A Acidic leucine-rich nuc 99.6 1.1E-15 3.6E-20 131.2 9.8 133 98-241 22-160 (168)
126 2o6r_A Variable lymphocyte rec 99.6 3.1E-15 1.1E-19 129.4 12.1 114 371-485 28-141 (177)
127 2wfh_A SLIT homolog 2 protein 99.6 3.5E-15 1.2E-19 130.8 12.2 109 371-481 31-139 (193)
128 2je0_A Acidic leucine-rich nuc 99.6 1.1E-15 3.9E-20 128.2 7.9 127 99-235 16-147 (149)
129 2wfh_A SLIT homolog 2 protein 99.6 1.7E-14 5.7E-19 126.4 14.3 108 100-216 31-138 (193)
130 2je0_A Acidic leucine-rich nuc 99.6 2.7E-15 9.1E-20 125.9 8.2 126 371-499 17-148 (149)
131 2o6r_A Variable lymphocyte rec 99.6 2.5E-14 8.6E-19 123.7 14.6 135 61-218 4-138 (177)
132 1a9n_A U2A', U2A'; complex (nu 99.5 1.4E-14 4.8E-19 125.1 9.4 132 96-241 15-153 (176)
133 1a9n_A U2A', U2A'; complex (nu 99.5 1.7E-14 5.8E-19 124.6 9.5 132 367-504 15-153 (176)
134 3sb4_A Hypothetical leucine ri 99.5 2.7E-14 9.2E-19 136.7 10.6 124 371-497 202-327 (329)
135 3g39_A Variable lymphocyte rec 99.5 3.2E-13 1.1E-17 115.6 11.5 110 372-485 10-119 (170)
136 4fdw_A Leucine rich hypothetic 99.4 7.9E-12 2.7E-16 122.1 21.7 64 414-479 317-381 (401)
137 1ds9_A Outer arm dynein; leuci 99.4 2.1E-16 7E-21 139.6 -9.8 155 97-258 15-180 (198)
138 4fs7_A Uncharacterized protein 99.4 2.6E-11 9E-16 118.9 23.9 119 367-494 272-390 (394)
139 2r9u_A Variable lymphocyte rec 99.4 8.8E-13 3E-17 113.3 11.7 107 373-483 14-120 (174)
140 1ds9_A Outer arm dynein; leuci 99.4 6.1E-16 2.1E-20 136.5 -9.2 148 78-241 20-185 (198)
141 3g39_A Variable lymphocyte rec 99.4 2.4E-12 8.2E-17 110.2 13.0 86 131-217 30-115 (170)
142 2r9u_A Variable lymphocyte rec 99.4 3.3E-12 1.1E-16 109.6 12.7 86 131-217 33-118 (174)
143 4fs7_A Uncharacterized protein 99.4 4.2E-11 1.4E-15 117.4 21.7 324 93-473 64-393 (394)
144 3un9_A NLR family member X1; l 99.3 2.3E-13 7.9E-18 131.7 3.1 118 372-489 127-260 (372)
145 4fdw_A Leucine rich hypothetic 99.3 1.1E-10 3.6E-15 114.2 21.8 198 126-341 131-333 (401)
146 3un9_A NLR family member X1; l 99.2 1.4E-13 4.9E-18 133.2 -5.2 164 331-506 72-254 (372)
147 4gt6_A Cell surface protein; l 99.2 2.2E-09 7.4E-14 105.2 24.0 107 368-479 262-368 (394)
148 2ifg_A High affinity nerve gro 99.2 5E-11 1.7E-15 114.9 11.4 104 375-482 12-117 (347)
149 2ifg_A High affinity nerve gro 99.2 6E-11 2.1E-15 114.3 11.1 107 63-191 7-115 (347)
150 4gt6_A Cell surface protein; l 99.0 4.3E-08 1.5E-12 95.9 22.3 310 143-501 51-367 (394)
151 4h09_A Hypothetical leucine ri 98.9 3.7E-07 1.3E-11 88.7 23.0 121 367-492 236-356 (379)
152 2ra8_A Uncharacterized protein 98.9 8.1E-10 2.8E-14 105.9 3.7 188 76-266 107-321 (362)
153 2ra8_A Uncharacterized protein 98.8 1.1E-08 3.6E-13 98.2 8.0 157 325-502 166-341 (362)
154 4h09_A Hypothetical leucine ri 98.7 1.7E-06 6E-11 84.0 20.2 302 126-501 41-343 (379)
155 1io0_A Tropomodulin; LRR prote 98.5 5.3E-08 1.8E-12 84.1 4.5 115 367-481 32-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.5 3.9E-08 1.3E-12 85.0 3.0 106 398-503 38-163 (185)
157 3rw6_A Nuclear RNA export fact 98.3 7E-07 2.4E-11 81.0 6.2 79 417-497 167-257 (267)
158 3e4g_A ATP synthase subunit S, 98.3 2.1E-07 7.3E-12 78.2 1.6 85 398-482 63-154 (176)
159 3rw6_A Nuclear RNA export fact 98.2 2.4E-07 8.1E-12 84.1 1.3 89 418-508 139-237 (267)
160 3e4g_A ATP synthase subunit S, 98.2 6.8E-07 2.3E-11 75.1 3.0 85 420-504 61-153 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.4 0.00012 4.1E-09 62.7 4.2 85 369-453 39-135 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00025 8.6E-09 60.7 4.1 109 396-504 41-170 (197)
163 3rfe_A Platelet glycoprotein I 96.6 0.0042 1.4E-07 49.5 6.7 57 399-457 11-68 (130)
164 3rfe_A Platelet glycoprotein I 96.4 0.0073 2.5E-07 48.0 6.5 13 156-168 32-44 (130)
165 2lz0_A Uncharacterized protein 45.8 26 0.00088 25.7 4.3 38 126-164 15-52 (100)
166 2lz0_A Uncharacterized protein 44.8 24 0.00082 25.9 4.0 46 408-454 8-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.1e-61 Score=513.76 Aligned_cols=478 Identities=28% Similarity=0.450 Sum_probs=313.0
Q ss_pred cCCCCCcHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcccceeeCCCCCcEEEEEcCCCCCccc---cC----------
Q 041374 27 CFGLHSNETDRLAYLAIKSQLQDPLGVTKSWNNSISLCQWTGVTCGHRHRRVTKLVLRNQSIGGF---LS---------- 93 (513)
Q Consensus 27 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~~~~v~c~~~~~~v~~L~l~~~~~~~~---~~---------- 93 (513)
|++..+.+.|+.||++||+++.||. .+.+|..+.+||+|.||.|+ .++|+.|+|+++.+.|. ++
T Consensus 4 ~~~~~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~ 80 (768)
T 3rgz_A 4 ASPSQSLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLE 80 (768)
T ss_dssp ----CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCC
T ss_pred CccccCCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCccc
Confidence 3444457889999999999999988 89999888899999999998 47999999998877764 22
Q ss_pred -------------ccccCCCCCCEEeCCCCCCcccCCC--CC-----------------CCCCcc---------------
Q 041374 94 -------------PYVGNLSFLRFVNLASNNLHGEIPY--EH-----------------GQLPPS--------------- 126 (513)
Q Consensus 94 -------------~~l~~l~~L~~L~L~~n~l~~~~~~--~~-----------------~~l~~~--------------- 126 (513)
..++++++|++|+|++|.++|.+|. .+ +.+|..
T Consensus 81 ~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~ 160 (768)
T 3rgz_A 81 SLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160 (768)
T ss_dssp EEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCS
T ss_pred ccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCC
Confidence 3556666677777776666654443 21 111111
Q ss_pred -----------------------------------cCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccC
Q 041374 127 -----------------------------------IGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMF 171 (513)
Q Consensus 127 -----------------------------------~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~ 171 (513)
+..+++|++|++++|.+.+.+|. ++.+++|++|++++|.+++..
T Consensus 161 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~ 239 (768)
T 3rgz_A 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF 239 (768)
T ss_dssp SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCH
T ss_pred CccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcc
Confidence 13445555555666666555555 777888888888888888777
Q ss_pred cccccCCCCCcEEeCCCCcCcc----------------------cCCccccCCCCCCCEEEccCCcccccCcccccCCCC
Q 041374 172 HSSIFNISSLELIYPLENRLEG----------------------SLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASN 229 (513)
Q Consensus 172 ~~~~~~l~~L~~L~l~~n~l~~----------------------~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 229 (513)
|..+.++++|++|++++|.+.+ .+|..++..+++|++|++++|++++.+|..++++++
T Consensus 240 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~ 319 (768)
T 3rgz_A 240 SRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319 (768)
T ss_dssp HHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTT
T ss_pred cHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCC
Confidence 7777777777777777766654 455555433477777777777777777777777777
Q ss_pred CCeeeCcccccccccccc-ccCCCCCcEEEcCCCCCCCCCCCCch-----------------------------------
Q 041374 230 LQLLDLSLNHFSGQVKID-FNRLPNLFRLNFGKNNLGTGAIGDLD----------------------------------- 273 (513)
Q Consensus 230 L~~L~L~~n~~~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~----------------------------------- 273 (513)
|++|++++|.+.+.+|.. +..+++|++|++++|.+.+..+..+.
T Consensus 320 L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L 399 (768)
T 3rgz_A 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399 (768)
T ss_dssp CCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEE
T ss_pred ccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEE
Confidence 888888777777666654 77777777777777766543332221
Q ss_pred ----------hhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcC
Q 041374 274 ----------FIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQL 343 (513)
Q Consensus 274 ----------~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 343 (513)
.+..+..+++|+.|++++|.+.+..|..++.++. ++.++++.|.+.+.+|..+..+++|++|++++|++
T Consensus 400 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l 478 (768)
T 3rgz_A 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK-LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478 (768)
T ss_dssp ECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT-CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred ECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCC-CCEEECCCCcccCcCCHHHcCCCCceEEEecCCcc
Confidence 1112233334444444444444444444444443 44444444444444444444555555555555555
Q ss_pred ccCCCccccC---CCCeEEe-----ccCCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCcc
Q 041374 344 TGPIPHAIGE---LRNLQLR-----GNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTE 415 (513)
Q Consensus 344 ~~~~~~~~~~---l~~L~l~-----~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~ 415 (513)
++.+|..+.. ++.|+++ +.+|.++..+++|++|++++|++.|.+|..+..... |++|++++|++++.+|..
T Consensus 479 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~g~ip~~ 557 (768)
T 3rgz_A 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS-LIWLDLNTNLFNGTIPAA 557 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTT-CCEEECCSSEEESBCCGG
T ss_pred cCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCC-CCEEECCCCccCCcCChH
Confidence 5555544332 3333332 235555666666666666666666666655544333 366666666665554433
Q ss_pred c----------------------------------------------------------------------cCCCCCCEE
Q 041374 416 V----------------------------------------------------------------------GNLKNLVQL 425 (513)
Q Consensus 416 ~----------------------------------------------------------------------~~l~~L~~L 425 (513)
+ ..+++|+.|
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~L 637 (768)
T 3rgz_A 558 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637 (768)
T ss_dssp GGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEE
T ss_pred HhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEE
Confidence 2 224567777
Q ss_pred eCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEccCCccc
Q 041374 426 DLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETINDFC 504 (513)
Q Consensus 426 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n~l~ 504 (513)
|+++|.++|.+|..++.+++|+.|+|++|++++.+|..+..+++|+.|||++|+++|.+|+.+..++.| ++|+++|+++
T Consensus 638 dLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp ECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred ECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 888888877888888888888888888888888888888888888888888888888888888888888 8888888888
Q ss_pred ccCCCC
Q 041374 505 HHKPKV 510 (513)
Q Consensus 505 ~~~p~~ 510 (513)
|.||..
T Consensus 718 g~iP~~ 723 (768)
T 3rgz_A 718 GPIPEM 723 (768)
T ss_dssp EECCSS
T ss_pred ccCCCc
Confidence 888864
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.2e-53 Score=441.85 Aligned_cols=440 Identities=22% Similarity=0.286 Sum_probs=344.3
Q ss_pred CCcHHHHHHHHHHHhhCCCCCCC--------CCCCCCCCCCCcc---cceeeCCCCCcEEEEEcCCCCCccccCccccCC
Q 041374 31 HSNETDRLAYLAIKSQLQDPLGV--------TKSWNNSISLCQW---TGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNL 99 (513)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~--------~~~w~~~~~~c~~---~~v~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l 99 (513)
+....|+.||.++++++.++... ..+|+.+.++|.| .||.|+.. ++|+.|+|+++++.|.+|+.++++
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L 104 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQL 104 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGC
T ss_pred hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcC
Confidence 34567999999999998744322 2379988899999 99999865 899999999999999999999999
Q ss_pred CCCCEEeCCCCCC------cc------cCC---------------------C----------------------------
Q 041374 100 SFLRFVNLASNNL------HG------EIP---------------------Y---------------------------- 118 (513)
Q Consensus 100 ~~L~~L~L~~n~l------~~------~~~---------------------~---------------------------- 118 (513)
++|++|+|++|.+ .+ .+| .
T Consensus 105 ~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~ 184 (636)
T 4eco_A 105 TELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK 184 (636)
T ss_dssp TTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCC
T ss_pred ccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchh
Confidence 9999999999965 22 000 0
Q ss_pred ---------CCCCCCcccCCCCCCCEEEeecCccccc-----------------CccccC--CCCCCCEEEcccccCCcc
Q 041374 119 ---------EHGQLPPSIGNLSALQNIDIAGNRLHSR-----------------VPESLG--QLRSLSFLDISENAFSGM 170 (513)
Q Consensus 119 ---------~~~~l~~~~~~l~~L~~L~l~~n~l~~~-----------------~p~~l~--~l~~L~~L~Ls~n~i~~~ 170 (513)
.+..+|+.++++++|++|++++|.+++. +|..++ ++++|++|++++|.+.+.
T Consensus 185 ~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~ 264 (636)
T 4eco_A 185 DTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK 264 (636)
T ss_dssp TTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS
T ss_pred hhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc
Confidence 1112677788888888888888888875 777877 888888888888888888
Q ss_pred CcccccCCCCCcEEeCCCCc-Ccc-cCCccccCCC------CCCCEEEccCCcccccCcc--cccCCCCCCeeeCccccc
Q 041374 171 FHSSIFNISSLELIYPLENR-LEG-SLPVNIGFSL------PNLEDLSVRQNNYTGSLPH--SLSNASNLQLLDLSLNHF 240 (513)
Q Consensus 171 ~~~~~~~l~~L~~L~l~~n~-l~~-~lp~~~~~~l------~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~L~~n~~ 240 (513)
+|..+.++++|++|++++|+ +++ .+|..++ .+ ++|++|++++|+++ .+|. .++++++|++|++++|.+
T Consensus 265 ~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~-~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l 342 (636)
T 4eco_A 265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQ-ALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQL 342 (636)
T ss_dssp CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHH-HHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCC
T ss_pred ChHHHhcCCCCCEEECcCCCCCccccchHHHH-hhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcC
Confidence 88888888888888888887 776 6777665 44 78888888888888 7777 788888888888888888
Q ss_pred cccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcc-cccccccccccCCcCchhhhccc-cccceEEecccc
Q 041374 241 SGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSK-LEAFGLDTNIFGGVLPLSIANLS-STIILFTMGLNQ 318 (513)
Q Consensus 241 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~n~~~~~~~~~~~~~~-~~l~~l~l~~~~ 318 (513)
.+.+| .+..+++|++|++++|.+.. .+..+..+++ |+.|++++|.+. .+|..+.... ..++.+++++|.
T Consensus 343 ~g~ip-~~~~l~~L~~L~L~~N~l~~-------lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~ 413 (636)
T 4eco_A 343 EGKLP-AFGSEIKLASLNLAYNQITE-------IPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNE 413 (636)
T ss_dssp EEECC-CCEEEEEESEEECCSSEEEE-------CCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSC
T ss_pred ccchh-hhCCCCCCCEEECCCCcccc-------ccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCc
Confidence 87777 77888888888888887763 2345667777 888888888877 5666555443 137888888888
Q ss_pred ceecCCcccc-------CCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHH
Q 041374 319 IYGTIPPEVK-------NLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQI 391 (513)
Q Consensus 319 ~~~~~~~~~~-------~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~ 391 (513)
+.+..|..+. .+++|++|++++|.++ .+|.. .+..+++|++|++++|+++ .+|...
T Consensus 414 l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~---------------~~~~l~~L~~L~Ls~N~l~-~i~~~~ 476 (636)
T 4eco_A 414 IGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKE---------------LFSTGSPLSSINLMGNMLT-EIPKNS 476 (636)
T ss_dssp TTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTH---------------HHHTTCCCSEEECCSSCCS-BCCSSS
T ss_pred CCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHH---------------HHccCCCCCEEECCCCCCC-CcCHHH
Confidence 8877777776 6678888888888877 33321 1234678899999999888 777766
Q ss_pred Hhhhc-------ccceEEccCCcCcccCCcccc--CCCCCCEEeCCCCccCccCCccccCCCCCCEEeC------CCCcc
Q 041374 392 LGILT-------LSILLDLSGNLLTGSIPTEVG--NLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYM------EGNSV 456 (513)
Q Consensus 392 ~~~~~-------~l~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L------~~n~l 456 (513)
+.... .|++|++++|+++ .+|..+. .+++|++|++++|++.+ +|..+..+++|++|++ ++|++
T Consensus 477 ~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l 554 (636)
T 4eco_A 477 LKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRT 554 (636)
T ss_dssp SEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBC
T ss_pred hccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcc
Confidence 65442 5688999999988 6777776 88999999999999986 8888888999999999 45777
Q ss_pred cccccccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEccCCccc
Q 041374 457 TGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETINDFC 504 (513)
Q Consensus 457 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n~l~ 504 (513)
.+.+|..+..+++|++|++++|++ +.+|..+. +.| .+|+++|++.
T Consensus 555 ~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 555 LREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred cccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 888888898899999999999999 57787655 677 9999999765
No 3
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.5e-51 Score=435.83 Aligned_cols=437 Identities=21% Similarity=0.276 Sum_probs=305.7
Q ss_pred CCCcHHHHHHHHHHHhhCCCCCCCCCCCCCCC-----CC--Ccc------------cceeeCCCCCcEEEEEcCCCCCcc
Q 041374 30 LHSNETDRLAYLAIKSQLQDPLGVTKSWNNSI-----SL--CQW------------TGVTCGHRHRRVTKLVLRNQSIGG 90 (513)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~-----~~--c~~------------~~v~c~~~~~~v~~L~l~~~~~~~ 90 (513)
+++...|+.||++||+++.+| +|.... ++ |.| .||.|+. .++|+.|+|+++++.|
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G 337 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKG 337 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEE
T ss_pred cccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCC
Confidence 345678999999999999877 564332 45 999 9999986 5899999999999999
Q ss_pred ccCccccCCCCCCEEeC-CCCCCcccCCCCC-------------------------------------------------
Q 041374 91 FLSPYVGNLSFLRFVNL-ASNNLHGEIPYEH------------------------------------------------- 120 (513)
Q Consensus 91 ~~~~~l~~l~~L~~L~L-~~n~l~~~~~~~~------------------------------------------------- 120 (513)
.+|+.++++++|++|+| ++|.++|..|...
T Consensus 338 ~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i 417 (876)
T 4ecn_A 338 RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPI 417 (876)
T ss_dssp EECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCC
T ss_pred cCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccc
Confidence 99999999999999999 8887776633210
Q ss_pred -------------CC-------CCcccCCCCCCCEEEeecCcccc-----------------cCccccC--CCCCCCEEE
Q 041374 121 -------------GQ-------LPPSIGNLSALQNIDIAGNRLHS-----------------RVPESLG--QLRSLSFLD 161 (513)
Q Consensus 121 -------------~~-------l~~~~~~l~~L~~L~l~~n~l~~-----------------~~p~~l~--~l~~L~~L~ 161 (513)
+. +|..++++++|++|++++|.+++ .+|..++ ++++|++|+
T Consensus 418 ~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~ 497 (876)
T 4ecn_A 418 KKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497 (876)
T ss_dssp CCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred ccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEE
Confidence 01 66677777777777777777776 2666666 777777777
Q ss_pred cccccCCccCcccccCCCCCcEEeCCCCc-Ccc-cCCcccc------CCCCCCCEEEccCCcccccCcc--cccCCCCCC
Q 041374 162 ISENAFSGMFHSSIFNISSLELIYPLENR-LEG-SLPVNIG------FSLPNLEDLSVRQNNYTGSLPH--SLSNASNLQ 231 (513)
Q Consensus 162 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~-~lp~~~~------~~l~~L~~L~l~~n~l~~~~~~--~l~~l~~L~ 231 (513)
+++|.+.+.+|..+.++++|+.|++++|+ +++ .+|..+. ..+++|++|++++|.++ .+|. .++++++|+
T Consensus 498 Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~ 576 (876)
T 4ecn_A 498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLG 576 (876)
T ss_dssp EESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCC
T ss_pred CcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCC
Confidence 77777777777777777777777777776 665 5665443 13347777777777777 6676 677777777
Q ss_pred eeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcc-cccccccccccCCcCchhhhccc-ccc
Q 041374 232 LLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSK-LEAFGLDTNIFGGVLPLSIANLS-STI 309 (513)
Q Consensus 232 ~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~n~~~~~~~~~~~~~~-~~l 309 (513)
+|++++|.+. .+| .++.+++|+.|++++|.+.. ++..+..+++ |+.|++++|.+. .+|..+.... ..+
T Consensus 577 ~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~-------lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L 646 (876)
T 4ecn_A 577 LLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEE-------IPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVM 646 (876)
T ss_dssp EEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSC-------CCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCE
T ss_pred EEECCCCCcc-cch-hhcCCCcceEEECcCCcccc-------chHHHhhccccCCEEECcCCCCC-cCchhhhccccCCC
Confidence 7777777776 555 67777777777777777663 2234566666 777777777776 4555544432 126
Q ss_pred ceEEeccccceecCCccc---c--CCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCc
Q 041374 310 ILFTMGLNQIYGTIPPEV---K--NLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLT 384 (513)
Q Consensus 310 ~~l~l~~~~~~~~~~~~~---~--~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~ 384 (513)
+.++++.|.+.+.+|... . ..++|+.|++++|.+. .+|..+ +..+++|+.|++++|.+.
T Consensus 647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~---------------~~~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTEL---------------FATGSPISTIILSNNLMT 710 (876)
T ss_dssp EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHH---------------HHTTCCCSEEECCSCCCS
T ss_pred CEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHH---------------HccCCCCCEEECCCCcCC
Confidence 777777777766554321 1 2346777777777776 333221 124567777777777776
Q ss_pred ccChHHHHhhhc-------ccceEEccCCcCcccCCcccc--CCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCC--
Q 041374 385 GALPPQILGILT-------LSILLDLSGNLLTGSIPTEVG--NLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEG-- 453 (513)
Q Consensus 385 ~~~p~~~~~~~~-------~l~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~-- 453 (513)
.+|..++.... .|+.|++++|+++ .+|..+. .+++|+.|++++|.+.+ +|..+..+++|+.|+|++
T Consensus 711 -~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 711 -SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp -CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB
T ss_pred -ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC
Confidence 66666554332 4577777777777 5666665 77777777777777775 677777777777777765
Q ss_pred ----CcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEccCCcccc
Q 041374 454 ----NSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETINDFCH 505 (513)
Q Consensus 454 ----n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n~l~~ 505 (513)
|++.+.+|..+..+++|+.|+|++|++ +.+|..+. +.| .+||++|++..
T Consensus 788 ~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNIS 841 (876)
T ss_dssp CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCE
T ss_pred CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCc
Confidence 666667777777777777777777777 56676544 466 77777777653
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.2e-50 Score=430.28 Aligned_cols=422 Identities=30% Similarity=0.500 Sum_probs=320.8
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCC---------------CCCCcccCCC-CCCCEEEee
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEH---------------GQLPPSIGNL-SALQNIDIA 139 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~---------------~~l~~~~~~l-~~L~~L~l~ 139 (513)
.+++.|++++|.+.+.++..+.++++|++|++++|.+++.+|... +.+|..+... ++|++|+++
T Consensus 223 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls 302 (768)
T 3rgz_A 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 302 (768)
T ss_dssp CSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECC
T ss_pred CCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECc
Confidence 356666666666666666666666666666666666665544210 1344444332 555555555
Q ss_pred cCcccccCccccCCCCCCCEEEcccccCCccCccc-ccCCCCCcEEeCCCCcCcccCCccccCCCC-CCCEEEccCCccc
Q 041374 140 GNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSS-IFNISSLELIYPLENRLEGSLPVNIGFSLP-NLEDLSVRQNNYT 217 (513)
Q Consensus 140 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~-~L~~L~l~~n~l~ 217 (513)
+|.+++.+|..++.+++|++|++++|.+++.+|.. +.++++|++|++++|.+.+.+|..+. .++ +|++|++++|.++
T Consensus 303 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~~L~~L~Ls~N~l~ 381 (768)
T 3rgz_A 303 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT-NLSASLLTLDLSSNNFS 381 (768)
T ss_dssp SSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHH-HHTTTCSEEECCSSEEE
T ss_pred CCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHH-hhhcCCcEEEccCCCcC
Confidence 55555555555555555555555555555444433 55555566666655555555555554 333 5666666666665
Q ss_pred ccCcccccC--CCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccC
Q 041374 218 GSLPHSLSN--ASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFG 295 (513)
Q Consensus 218 ~~~~~~l~~--l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 295 (513)
+.+|..+.. +++|++|++++|.+.+..|..+..+++|++|++++|.+.+.. +..+..+++|+.|++++|.+.
T Consensus 382 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~------p~~l~~l~~L~~L~L~~n~l~ 455 (768)
T 3rgz_A 382 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI------PSSLGSLSKLRDLKLWLNMLE 455 (768)
T ss_dssp EECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCC------CGGGGGCTTCCEEECCSSCCC
T ss_pred CCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcc------cHHHhcCCCCCEEECCCCccc
Confidence 555555544 667777888888777778888888888888888888877633 356788899999999999999
Q ss_pred CcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccC---CCCeEE-----eccCCccc
Q 041374 296 GVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGE---LRNLQL-----RGNVPSSL 367 (513)
Q Consensus 296 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~---l~~L~l-----~~~~~~~l 367 (513)
+.+|..+..++. ++.++++.|++.+.+|..+..+++|++|++++|++++.+|.++.. ++.|++ +|.+|..+
T Consensus 456 ~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 534 (768)
T 3rgz_A 456 GEIPQELMYVKT-LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534 (768)
T ss_dssp SCCCGGGGGCTT-CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG
T ss_pred CcCCHHHcCCCC-ceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH
Confidence 999999998887 999999999999999999999999999999999999999987765 455554 44688899
Q ss_pred cCCCCCCEEecccCcCcccChHHHHhh-----------------------------------------------------
Q 041374 368 GNCQNLMLLSVSNNKLTGALPPQILGI----------------------------------------------------- 394 (513)
Q Consensus 368 ~~~~~L~~L~ls~n~l~~~~p~~~~~~----------------------------------------------------- 394 (513)
..+++|+.|++++|.+.|.+|..++..
T Consensus 535 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 614 (768)
T 3rgz_A 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614 (768)
T ss_dssp GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSC
T ss_pred cCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccc
Confidence 999999999999999999999876542
Q ss_pred ----------------hcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccc
Q 041374 395 ----------------LTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTG 458 (513)
Q Consensus 395 ----------------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 458 (513)
...++.|++++|+++|.+|..++.+++|+.|++++|.++|.+|..++.+++|+.|||++|+++|
T Consensus 615 l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g 694 (768)
T 3rgz_A 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694 (768)
T ss_dssp TTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred cccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccC
Confidence 1346789999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEccCCc-cccc
Q 041374 459 SIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETIND-FCHH 506 (513)
Q Consensus 459 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n~-l~~~ 506 (513)
.+|..+..++.|++||+++|+++|.+|+. ..+..+ ...+.+|+ ++|.
T Consensus 695 ~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 695 RIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp CCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEEST
T ss_pred cCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCC
Confidence 99999999999999999999999999975 334444 55566775 7764
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.3e-47 Score=401.08 Aligned_cols=437 Identities=20% Similarity=0.197 Sum_probs=300.9
Q ss_pred CCCCCCCCc--ccceeeCCC---------CCcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCc
Q 041374 57 WNNSISLCQ--WTGVTCGHR---------HRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPP 125 (513)
Q Consensus 57 w~~~~~~c~--~~~v~c~~~---------~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 125 (513)
|.+..+.|. +..+.|... ..+++.|++++|.+.+..+..+.++++|++|++++|.+.+. .|.
T Consensus 3 ~~~~~C~~~~~~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-------~~~ 75 (606)
T 3t6q_A 3 SSDQKCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI-------HED 75 (606)
T ss_dssp ---CCCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEE-------CTT
T ss_pred cccCceecccCCceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCcccee-------Chh
Confidence 333434443 445777532 25799999999999998899999999999999999998843 356
Q ss_pred ccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCC
Q 041374 126 SIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPN 205 (513)
Q Consensus 126 ~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~ 205 (513)
.|+++++|++|++++|.+.+..|..|+++++|++|++++|.+++..+..+.++++|++|++++|.+.+.-+..+. .+++
T Consensus 76 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~ 154 (606)
T 3t6q_A 76 TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF-PTEK 154 (606)
T ss_dssp TTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTC-CCTT
T ss_pred hccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCccccc-CCcc
Confidence 789999999999999999998899999999999999999999988788899999999999999999852223333 4889
Q ss_pred CCEEEccCCcccccCcccccCCCCCC--eeeCcccccccccccc------------------------------------
Q 041374 206 LEDLSVRQNNYTGSLPHSLSNASNLQ--LLDLSLNHFSGQVKID------------------------------------ 247 (513)
Q Consensus 206 L~~L~l~~n~l~~~~~~~l~~l~~L~--~L~L~~n~~~~~~~~~------------------------------------ 247 (513)
|++|++++|.+++..+..++.+++|+ .|++++|.+.+..+..
T Consensus 155 L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~ 234 (606)
T 3t6q_A 155 LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGT 234 (606)
T ss_dssp CCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCC
T ss_pred cCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechh
Confidence 99999999999877777777888777 7777777765443322
Q ss_pred ---------------------------------------ccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCccccccc
Q 041374 248 ---------------------------------------FNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFG 288 (513)
Q Consensus 248 ---------------------------------------~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~ 288 (513)
|..+++|++|++++|.++. .+..+..+++|+.|+
T Consensus 235 ~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------lp~~l~~l~~L~~L~ 307 (606)
T 3t6q_A 235 FEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-------LPSGLVGLSTLKKLV 307 (606)
T ss_dssp CTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSC-------CCSSCCSCTTCCEEE
T ss_pred hccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCC-------CChhhcccccCCEEE
Confidence 4445566666666665553 224456667777777
Q ss_pred ccccccCCcCchhhhccccccceEEeccccceecCCc-cccCCCCCCEEeccCCcCccCC--Cc---cccCCCCeEEecc
Q 041374 289 LDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPP-EVKNLVNLNGFGLEYNQLTGPI--PH---AIGELRNLQLRGN 362 (513)
Q Consensus 289 l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~--~~---~~~~l~~L~l~~~ 362 (513)
+++|.+.+..|..+..++. ++.++++.|.+.+.+|. .+..+++|++|++++|.+.+.. +. .+.+++.|+++++
T Consensus 308 l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 386 (606)
T 3t6q_A 308 LSANKFENLCQISASNFPS-LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386 (606)
T ss_dssp CTTCCCSBGGGGCGGGCTT-CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC
T ss_pred CccCCcCcCchhhhhccCc-CCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCC
Confidence 7777777666666666665 77777777766655544 3666677777777777666443 22 2344555555443
Q ss_pred -----CCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCcc--
Q 041374 363 -----VPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIE-- 435 (513)
Q Consensus 363 -----~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-- 435 (513)
.|..+..+++|++|++++|.+.+..+...+...+.|++|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus 387 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 466 (606)
T 3t6q_A 387 EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI 466 (606)
T ss_dssp SCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEE
T ss_pred cCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccc
Confidence 3445566666666666666666554444334444456666666666655566666666666666666666542
Q ss_pred -CCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCceEEccCCcccccCCC
Q 041374 436 -IPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFNKMNETINDFCHHKPK 509 (513)
Q Consensus 436 -~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l~l~l~~n~l~~~~p~ 509 (513)
.+..+..+++|++|++++|++++..|..+..+++|+.|++++|++++.+|+.+.+++.+++++++|++++.+|.
T Consensus 467 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~L~L~~N~l~~~~~~ 541 (606)
T 3t6q_A 467 QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPS 541 (606)
T ss_dssp CSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSCEEECCSSCCCCCCGG
T ss_pred ccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcccccEEECcCCcccccCHh
Confidence 22445666666666666666665556666666666666666666666666666666655666666666655554
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.1e-45 Score=381.50 Aligned_cols=419 Identities=19% Similarity=0.183 Sum_probs=309.7
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 155 (513)
.+++.|++++|.+.+..+..+.++++|++|++++|.+++. .|..|.++++|++|++++|.+++..|..|++++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i-------~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 104 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI-------EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT 104 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-------CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCT
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccccc-------CHHHhhchhhcCEeECCCCcccccChhhcCCcc
Confidence 6799999999999998888999999999999999999843 245789999999999999999998899999999
Q ss_pred CCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcc-cCCccccCCCCCCCEEEccCCcccccCcccccCCCCCC---
Q 041374 156 SLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEG-SLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQ--- 231 (513)
Q Consensus 156 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~--- 231 (513)
+|++|++++|.+++..+..+.++++|++|++++|.+.+ .+|..+. .+++|++|++++|++++..+..++.+++|+
T Consensus 105 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l 183 (606)
T 3vq2_A 105 SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS-NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183 (606)
T ss_dssp TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGG-TCTTCCEEECCSSCCCEECTTTTHHHHHCTTCC
T ss_pred cCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHh-hcCCCCEEEccCCcceecChhhhhhhhcccccc
Confidence 99999999999998888889999999999999999985 5788877 899999999999999987777777666554
Q ss_pred -eeeCccccccccccccccCCCCCcEEEcCCCCCCCCC------------------------------------------
Q 041374 232 -LLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGA------------------------------------------ 268 (513)
Q Consensus 232 -~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~------------------------------------------ 268 (513)
++++++|.+.+..+..+... +|+.|++++|.+.+..
T Consensus 184 ~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~ 262 (606)
T 3vq2_A 184 LSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262 (606)
T ss_dssp CEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSE
T ss_pred ceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhcc
Confidence 78898888876555555444 7888888777653100
Q ss_pred --------CCCc-h-h---------------------hcccCCCcccccccccccccCCcCchhhhccccccceEEeccc
Q 041374 269 --------IGDL-D-F---------------------IAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLN 317 (513)
Q Consensus 269 --------~~~~-~-~---------------------~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~ 317 (513)
...+ . . ...+..+++|+.|++++|.+ +.+|. + .++. ++.++++.|
T Consensus 263 l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~-L~~L~l~~n 338 (606)
T 3vq2_A 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPT-L-DLPF-LKSLTLTMN 338 (606)
T ss_dssp EEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCCC-C-CCSS-CCEEEEESC
T ss_pred HhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-ccccc-C-CCCc-cceeeccCC
Confidence 0000 0 0 01234445566666666666 44442 2 4443 666666666
Q ss_pred cceecCCccccCCCCCCEEeccCCcCccCC--Ccc---ccCCCCeEEecc----CCccccCCCCCCEEecccCcCcccCh
Q 041374 318 QIYGTIPPEVKNLVNLNGFGLEYNQLTGPI--PHA---IGELRNLQLRGN----VPSSLGNCQNLMLLSVSNNKLTGALP 388 (513)
Q Consensus 318 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~---~~~l~~L~l~~~----~~~~l~~~~~L~~L~ls~n~l~~~~p 388 (513)
...+.. .+..+++|++|++++|.+++.. +.. +.+++.|+++++ +|..+..+++|+.|++++|++.+..|
T Consensus 339 ~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 416 (606)
T 3vq2_A 339 KGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTE 416 (606)
T ss_dssp SSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTT
T ss_pred cCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccC
Confidence 444333 4456777888888888776542 332 345666666553 45666777888888888887776555
Q ss_pred HHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCcc-CCccccCCCCCCEEeCCCCcccccccccccCC
Q 041374 389 PQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIE-IPVSLSACTTLEYLYMEGNSVTGSIPLALNTL 467 (513)
Q Consensus 389 ~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 467 (513)
...+...+.|++|++++|++.+..|..+..+++|++|++++|.+.+. +|..+..+++|++|++++|++++..|..+..+
T Consensus 417 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 496 (606)
T 3vq2_A 417 FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 496 (606)
T ss_dssp TTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhccc
Confidence 33444445557888888887777777777777788888888777763 57777777777778887777777777777777
Q ss_pred CCCCEEECCCCCCCcccchhhhcccCc-eEEccCCcccccCCCC
Q 041374 468 KSIKELDLSRNNLSGHIPEFLENLSFN-KMNETINDFCHHKPKV 510 (513)
Q Consensus 468 ~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n~l~~~~p~~ 510 (513)
++|++|++++|++++.+|..+..++.| ++++++|+++ .+|..
T Consensus 497 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~ 539 (606)
T 3vq2_A 497 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGI 539 (606)
T ss_dssp TTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESC
T ss_pred ccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHh
Confidence 777777777777777777777777777 7777777777 55544
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.7e-44 Score=376.04 Aligned_cols=415 Identities=21% Similarity=0.183 Sum_probs=315.9
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCC--
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQ-- 153 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~-- 153 (513)
.+++.|++++|.+.+..+..|.++++|++|++++|.+++..| ..|+++++|++|++++|.+++..+..+.+
T Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-------~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~ 129 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE-------TALSGPKALKHLFFIQTGISSIDFIPLHNQK 129 (606)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECT-------TTTSSCTTCCEEECTTSCCSCGGGSCCTTCT
T ss_pred ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccCh-------hhhcccccccEeeccccCcccCCcchhccCC
Confidence 567888888888877777778888888888888887774433 23444444444444444444433344444
Q ss_pred ----------------------CCCCCEEEcccccCCccCcccccCCCCCc--EEeCCCCcCcccCCccccCCC------
Q 041374 154 ----------------------LRSLSFLDISENAFSGMFHSSIFNISSLE--LIYPLENRLEGSLPVNIGFSL------ 203 (513)
Q Consensus 154 ----------------------l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~--~L~l~~n~l~~~lp~~~~~~l------ 203 (513)
+++|++|++++|.+++..+..+..+++|+ .+++++|.+.+..|..+. ..
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~ 208 (606)
T 3t6q_A 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLN 208 (606)
T ss_dssp TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEE
T ss_pred cccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhh-hccccccc
Confidence 45555555555555544444555555555 555555555432222111 00
Q ss_pred ---------------------------------------------CCCCEEEccCCcccccCcccccCCCCCCeeeCccc
Q 041374 204 ---------------------------------------------PNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLN 238 (513)
Q Consensus 204 ---------------------------------------------~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 238 (513)
.+|+++++++|.+++..+..+..+++|++|++++|
T Consensus 209 l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 288 (606)
T 3t6q_A 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT 288 (606)
T ss_dssp CTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS
T ss_pred cCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCC
Confidence 04556666666666555566888999999999999
Q ss_pred cccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCch-hhhccccccceEEeccc
Q 041374 239 HFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPL-SIANLSSTIILFTMGLN 317 (513)
Q Consensus 239 ~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~~l~~l~l~~~ 317 (513)
.+. .+|..+..+++|++|++++|.+.... +..+..+++|+.|++++|.+.+..+. .+..++. ++.++++.|
T Consensus 289 ~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~-L~~L~l~~n 360 (606)
T 3t6q_A 289 HLS-ELPSGLVGLSTLKKLVLSANKFENLC------QISASNFPSLTHLSIKGNTKRLELGTGCLENLEN-LRELDLSHD 360 (606)
T ss_dssp CCS-CCCSSCCSCTTCCEEECTTCCCSBGG------GGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT-CCEEECCSS
T ss_pred ccC-CCChhhcccccCCEEECccCCcCcCc------hhhhhccCcCCEEECCCCCcccccchhhhhccCc-CCEEECCCC
Confidence 998 67888999999999999999988632 35677889999999999998866655 4677766 999999999
Q ss_pred cceecC--CccccCCCCCCEEeccCCcCccCCCccc---cCCCCeEEecc-----CC-ccccCCCCCCEEecccCcCccc
Q 041374 318 QIYGTI--PPEVKNLVNLNGFGLEYNQLTGPIPHAI---GELRNLQLRGN-----VP-SSLGNCQNLMLLSVSNNKLTGA 386 (513)
Q Consensus 318 ~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~---~~l~~L~l~~~-----~~-~~l~~~~~L~~L~ls~n~l~~~ 386 (513)
.+.+.. +..+..+++|++|++++|.+.+..+..+ .+++.|+++++ .+ ..+..+++|++|++++|.+.+.
T Consensus 361 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 440 (606)
T 3t6q_A 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS 440 (606)
T ss_dssp CCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTT
T ss_pred ccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCc
Confidence 998765 7788999999999999999987767655 45666776653 33 3478899999999999999866
Q ss_pred ChHHHHhhhcccceEEccCCcCccc---CCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCccccccccc
Q 041374 387 LPPQILGILTLSILLDLSGNLLTGS---IPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLA 463 (513)
Q Consensus 387 ~p~~~~~~~~~l~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 463 (513)
.|..+.. .+.|++|++++|++++. .+..+..+++|++|++++|.+.+..|..+..+++|++|++++|++++..|..
T Consensus 441 ~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 519 (606)
T 3t6q_A 441 SEQLFDG-LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519 (606)
T ss_dssp CTTTTTT-CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGG
T ss_pred CHHHHhC-CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhH
Confidence 6665544 45569999999999863 3356889999999999999999888999999999999999999999999999
Q ss_pred ccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEccCCcccccCC
Q 041374 464 LNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETINDFCHHKP 508 (513)
Q Consensus 464 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n~l~~~~p 508 (513)
+..++.| .|++++|++++.+|..+..++.| ++++++|++++..+
T Consensus 520 l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 520 LSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp GTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred hCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 9999999 99999999999999999999999 99999999987655
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.5e-43 Score=375.24 Aligned_cols=418 Identities=20% Similarity=0.194 Sum_probs=252.8
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 155 (513)
.+++.|++++|.+.+..+..+.++++|++|++++|.+++. .|..++++++|++|++++|.+++..+..|.+++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-------~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 97 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL-------EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT 97 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCC-------CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCcc-------CHHHHhcccCcCEEECCCCccCccChhhhccCC
Confidence 5788889988888887777888888888888888888743 244567777777777777777765445677777
Q ss_pred CCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCccccc--CCCCCCee
Q 041374 156 SLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLS--NASNLQLL 233 (513)
Q Consensus 156 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L 233 (513)
+|++|++++|.+++..+..|.++++|++|++++|.+.+..|..+. .+++|++|++++|.+++..+..+. .+++|++|
T Consensus 98 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 176 (680)
T 1ziw_A 98 NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV-QLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176 (680)
T ss_dssp TCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSS-CCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEE
T ss_pred CCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhc-ccccCCEEEccCCcccccCHHHhhccccccccEE
Confidence 777777777777766667777777777777777777754444444 677777777777777655444432 34666666
Q ss_pred eCccccccccccccccCC---------------------------CC--------------------------CcEEEcC
Q 041374 234 DLSLNHFSGQVKIDFNRL---------------------------PN--------------------------LFRLNFG 260 (513)
Q Consensus 234 ~L~~n~~~~~~~~~~~~l---------------------------~~--------------------------L~~L~L~ 260 (513)
++++|.+.+..+..+..+ ++ |++|+++
T Consensus 177 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls 256 (680)
T 1ziw_A 177 ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLS 256 (680)
T ss_dssp ECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECT
T ss_pred ECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECC
Confidence 666666655544443332 22 4444444
Q ss_pred CCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEecccccee-----cCCc----cccCCC
Q 041374 261 KNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYG-----TIPP----EVKNLV 331 (513)
Q Consensus 261 ~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-----~~~~----~~~~~~ 331 (513)
+|.+.+.. +..+..+++|+.|++++|.+.+..|..+..+.. ++.++++.+...+ .+|. .+..++
T Consensus 257 ~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~ 329 (680)
T 1ziw_A 257 YNNLNVVG------NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFN-VRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329 (680)
T ss_dssp TSCCCEEC------TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTT-CCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred CCCcCccC------cccccCcccccEeeCCCCccCccChhhhcCCCC-ccEEeccchhhhcccccccccccChhhcccCC
Confidence 44443321 123455566666666666666555544443332 3333333221111 1111 233344
Q ss_pred CCCEEeccCCcCccCCCcccc-------------------------------CCCCeEEecc-----CCccccCCCCCCE
Q 041374 332 NLNGFGLEYNQLTGPIPHAIG-------------------------------ELRNLQLRGN-----VPSSLGNCQNLML 375 (513)
Q Consensus 332 ~L~~L~l~~n~~~~~~~~~~~-------------------------------~l~~L~l~~~-----~~~~l~~~~~L~~ 375 (513)
+|++|++++|.+.+..+..+. .++.|+++++ .|..+..+++|+.
T Consensus 330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 409 (680)
T 1ziw_A 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409 (680)
T ss_dssp TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence 444444444444443332222 2333333222 3445666777777
Q ss_pred EecccCcCcccChHHHHhhhcccceEEccCCcCcc--------------------------cCCccccCCCCCCEEeCCC
Q 041374 376 LSVSNNKLTGALPPQILGILTLSILLDLSGNLLTG--------------------------SIPTEVGNLKNLVQLDLSE 429 (513)
Q Consensus 376 L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~--------------------------~~~~~~~~l~~L~~L~l~~ 429 (513)
|++++|.+.+.+|...+.....+++|++++|++.+ ..|..+..+++|+.|++++
T Consensus 410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~ 489 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489 (680)
T ss_dssp EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS
T ss_pred EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCC
Confidence 77777777666664444444455666666666543 3445556666677777777
Q ss_pred CccCccCCccccCCCCCCEEeCCCCccccccc--------ccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEccC
Q 041374 430 NHFSIEIPVSLSACTTLEYLYMEGNSVTGSIP--------LALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETI 500 (513)
Q Consensus 430 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~ 500 (513)
|.+.+..+..+.++++|++|++++|++++..+ ..+..+++|+.|++++|+++...+..|.+++.| .+++++
T Consensus 490 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 569 (680)
T 1ziw_A 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL 569 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCC
Confidence 77765555566777777777777777664321 125667777777777777774444467778888 888888
Q ss_pred CcccccCC
Q 041374 501 NDFCHHKP 508 (513)
Q Consensus 501 n~l~~~~p 508 (513)
|++++-.|
T Consensus 570 N~l~~l~~ 577 (680)
T 1ziw_A 570 NNLNTLPA 577 (680)
T ss_dssp SCCCCCCT
T ss_pred CCCCcCCH
Confidence 88874433
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-43 Score=368.66 Aligned_cols=421 Identities=19% Similarity=0.190 Sum_probs=333.9
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 155 (513)
.+++.|++++|.+.+..+..+.++++|++|++++|.+++. .+..|+++++|++|++++|.+++..|..|.+++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-------EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEE-------CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCcc-------CcccccCchhCCEEeCcCCcCCccCHhhhcCcc
Confidence 5799999999999998888999999999999999998832 244688999999999999999998888999999
Q ss_pred CCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcc-cCCccccCCCCCCCEEEccCCcccccCcccccCCCCC----
Q 041374 156 SLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEG-SLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNL---- 230 (513)
Q Consensus 156 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L---- 230 (513)
+|++|++++|.++...+..+.++++|++|++++|.+.+ .+|..+. .+++|++|++++|++++..+..++.+++|
T Consensus 101 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~ 179 (570)
T 2z63_A 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179 (570)
T ss_dssp TCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGG-GCTTCCEEECTTSCCCEECGGGGHHHHTCTTCC
T ss_pred ccccccccccccccCCCccccccccccEEecCCCccceecChhhhc-ccCCCCEEeCcCCccceecHHHccchhccchhh
Confidence 99999999999998877779999999999999999985 4688777 89999999999999997777788888888
Q ss_pred CeeeCccccccccccccccCCCCCcEEEcCCCCCCCC-------------------------------CCCCc-------
Q 041374 231 QLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTG-------------------------------AIGDL------- 272 (513)
Q Consensus 231 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~-------------------------------~~~~~------- 272 (513)
..+++++|.+.+..+..+... +|+.|++++|..... ....+
T Consensus 180 ~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~ 258 (570)
T 2z63_A 180 LSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258 (570)
T ss_dssp CEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSE
T ss_pred hhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccc
Confidence 889999999887777666555 677777766521100 00000
Q ss_pred --------------hhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccce------------------
Q 041374 273 --------------DFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIY------------------ 320 (513)
Q Consensus 273 --------------~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~------------------ 320 (513)
..+..+..+++|+.|++++|.+.+ +|.++... .++.++++.|.+.
T Consensus 259 l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~--~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n 335 (570)
T 2z63_A 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF--GWQHLELVNCKFGQFPTLKLKSLKRLTFTSN 335 (570)
T ss_dssp EEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCC--CCSEEEEESCBCSSCCBCBCSSCCEEEEESC
T ss_pred hhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccC--CccEEeeccCcccccCcccccccCEEeCcCC
Confidence 012334556677777777776653 44444444 2555555555544
Q ss_pred ---ecCCccccCCCCCCEEeccCCcCccCC--Cc---cccCCCCeEEecc----CCccccCCCCCCEEecccCcCcccCh
Q 041374 321 ---GTIPPEVKNLVNLNGFGLEYNQLTGPI--PH---AIGELRNLQLRGN----VPSSLGNCQNLMLLSVSNNKLTGALP 388 (513)
Q Consensus 321 ---~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~---~~~~l~~L~l~~~----~~~~l~~~~~L~~L~ls~n~l~~~~p 388 (513)
+..+. ..+++|++|++++|.+++.. +. .+.+++.|+++++ ++..+..+++|++|++++|.+.+..+
T Consensus 336 ~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 413 (570)
T 2z63_A 336 KGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE 413 (570)
T ss_dssp BSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTT
T ss_pred cccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccc
Confidence 32222 45677777777777776432 22 3456666776664 34447788999999999998886666
Q ss_pred HHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccC-ccCCccccCCCCCCEEeCCCCcccccccccccCC
Q 041374 389 PQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFS-IEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTL 467 (513)
Q Consensus 389 ~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 467 (513)
...+...+.|++|++++|.+.+..+..+..+++|++|++++|.+. +.+|..+..+++|++|++++|++++..|..+..+
T Consensus 414 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 493 (570)
T 2z63_A 414 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493 (570)
T ss_dssp SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcc
Confidence 445555666799999999999888888999999999999999997 5789999999999999999999998889999999
Q ss_pred CCCCEEECCCCCCCcccchhhhcccCc-eEEccCCcccccCCCC
Q 041374 468 KSIKELDLSRNNLSGHIPEFLENLSFN-KMNETINDFCHHKPKV 510 (513)
Q Consensus 468 ~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n~l~~~~p~~ 510 (513)
++|+.|++++|++++.+|..+..++.| ++++++|++++..|..
T Consensus 494 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 494 SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred cCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 999999999999998888889999999 9999999999998853
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=8.4e-44 Score=384.51 Aligned_cols=437 Identities=19% Similarity=0.196 Sum_probs=295.9
Q ss_pred CcccceeeCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcc
Q 041374 64 CQWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRL 143 (513)
Q Consensus 64 c~~~~v~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l 143 (513)
|.|..|.+ ...+++.|+|++|.+.+..+..+.++++|++|++++|...+.++ |..|+++++|++|++++|.+
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~------~~~f~~L~~L~~L~Ls~N~l 85 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID------KEAFRNLPNLRILDLGSSKI 85 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEEC------TTTTSSCTTCCEEECTTCCC
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccC------HHHhcCCCCCCEEECCCCcC
Confidence 45666665 45789999999999999989999999999999999997664443 55789999999999999999
Q ss_pred cccCccccCCCCCCCEEEcccccCCccCccc--ccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCc
Q 041374 144 HSRVPESLGQLRSLSFLDISENAFSGMFHSS--IFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLP 221 (513)
Q Consensus 144 ~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~--~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~ 221 (513)
.+..|..|.++++|++|++++|.+++..+.. +.++++|++|++++|.+.+..+...+..+++|++|++++|.+++..+
T Consensus 86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165 (844)
T ss_dssp CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence 9988999999999999999999999866654 89999999999999999865554333489999999999999988878
Q ss_pred ccccCC--CCCCeeeCccccccccccccccCCCC------CcEEEcCCCCCCCCCCCCch--------------------
Q 041374 222 HSLSNA--SNLQLLDLSLNHFSGQVKIDFNRLPN------LFRLNFGKNNLGTGAIGDLD-------------------- 273 (513)
Q Consensus 222 ~~l~~l--~~L~~L~L~~n~~~~~~~~~~~~l~~------L~~L~L~~n~~~~~~~~~~~-------------------- 273 (513)
..+..+ ++|+.|++++|.+.+..+..+..+++ |+.|++++|.+.+.....+.
T Consensus 166 ~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~ 245 (844)
T 3j0a_A 166 HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245 (844)
T ss_dssp GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC
T ss_pred HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc
Confidence 777766 78888888888887777666665554 78888877765443221111
Q ss_pred ------------------------------------hhcccCCCcccccccccccccCCcCchhhhccccccceEEeccc
Q 041374 274 ------------------------------------FIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLN 317 (513)
Q Consensus 274 ------------------------------------~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~ 317 (513)
.+..+..+++|+.|++++|.+.+..+..+..++. ++.++++.|
T Consensus 246 ~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~-L~~L~Ls~N 324 (844)
T 3j0a_A 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN-LQVLNLSYN 324 (844)
T ss_dssp SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSS-CCEEEEESC
T ss_pred cccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCC-CCEEECCCC
Confidence 0112233444444444444444444444444443 455555555
Q ss_pred cceecCCccccCCCCCCEEeccCCcCccCCCcc---ccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChH-----
Q 041374 318 QIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHA---IGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPP----- 389 (513)
Q Consensus 318 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~----- 389 (513)
.+.+..|..+..+++|++|++++|.+.+..+.. +.+++.|+++++-...+..+++|+.|++++|++. .+|.
T Consensus 325 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~-~l~~~~~~l 403 (844)
T 3j0a_A 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLV-TLPKINLTA 403 (844)
T ss_dssp CCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCC-CCCCCCTTC
T ss_pred CCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcc-ccccccccc
Confidence 544444444455555555555555444333322 2334444444443333333344444444444333 2221
Q ss_pred ----------------HHHhhhcccceEEccCCcCcccCCc-cccCCCCCCEEeCCCCccC-----ccCCccccCCCCCC
Q 041374 390 ----------------QILGILTLSILLDLSGNLLTGSIPT-EVGNLKNLVQLDLSENHFS-----IEIPVSLSACTTLE 447 (513)
Q Consensus 390 ----------------~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~-----~~~~~~~~~l~~L~ 447 (513)
......+.|+.|++++|++++..+. .+..+++|+.|++++|.+. +..+..|..+++|+
T Consensus 404 ~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~ 483 (844)
T 3j0a_A 404 NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQ 483 (844)
T ss_dssp CEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEE
T ss_pred ceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCccccc
Confidence 1112233446777777776643322 2445667777777777765 23345577788888
Q ss_pred EEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEccCCcccccCCCCCc
Q 041374 448 YLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETINDFCHHKPKVFA 512 (513)
Q Consensus 448 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n~l~~~~p~~~~ 512 (513)
.|+|++|++++..|..+..+++|+.|+|++|++++..|..+. +.| .+|+++|+++|.+|..+.
T Consensus 484 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~ 547 (844)
T 3j0a_A 484 VLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV 547 (844)
T ss_dssp CCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS
T ss_pred EEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC
Confidence 888888888877777788888888888888888876666655 667 888888888888887653
No 11
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.1e-42 Score=368.56 Aligned_cols=424 Identities=19% Similarity=0.224 Sum_probs=244.6
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCc-ccCCCCCCCEEEeecCcccccCccccCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPP-SIGNLSALQNIDIAGNRLHSRVPESLGQL 154 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-~~~~l~~L~~L~l~~n~l~~~~p~~l~~l 154 (513)
.+++.|++++|.+.+..+..+.++++|++|++++|.++ .+|. .|+++++|++|++++|.+.+..|..|.++
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--------~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 120 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS--------QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC--------CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTC
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC--------ccChhhhccCCCCCEEECCCCccCccChhHcccc
Confidence 46777777777777766667777777777777777766 3333 45666666666666666665555556666
Q ss_pred CCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCcccc-CCCCCCCEEEcc---------------------
Q 041374 155 RSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIG-FSLPNLEDLSVR--------------------- 212 (513)
Q Consensus 155 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~-~~l~~L~~L~l~--------------------- 212 (513)
++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..+. ..+++|++|+++
T Consensus 121 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 200 (680)
T 1ziw_A 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL 200 (680)
T ss_dssp TTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEE
T ss_pred CCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhh
Confidence 6666666666666655555555666666666666555422221110 012333333333
Q ss_pred ------------------------------CCcccccCcccccCCCC--CCeeeCccccccccccccccCCCCCcEEEcC
Q 041374 213 ------------------------------QNNYTGSLPHSLSNASN--LQLLDLSLNHFSGQVKIDFNRLPNLFRLNFG 260 (513)
Q Consensus 213 ------------------------------~n~l~~~~~~~l~~l~~--L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 260 (513)
+|.+++..|..+..++. |++|++++|.+.+..+..+..+++|++|+++
T Consensus 201 ~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 280 (680)
T 1ziw_A 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLE 280 (680)
T ss_dssp ECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred hccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCC
Confidence 33333333333443332 6777777777666666666777777777777
Q ss_pred CCCCCCCCCCCch-----------------------hhc----ccCCCcccccccccccccCCcCchhhhcccc------
Q 041374 261 KNNLGTGAIGDLD-----------------------FIA----HLTNCSKLEAFGLDTNIFGGVLPLSIANLSS------ 307 (513)
Q Consensus 261 ~n~~~~~~~~~~~-----------------------~~~----~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~------ 307 (513)
+|.+.+..+..+. .+. .+..+++|+.|++++|.+.+..+..+..++.
T Consensus 281 ~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 360 (680)
T 1ziw_A 281 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360 (680)
T ss_dssp SCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEEC
T ss_pred CCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEEC
Confidence 7766543322111 000 3455667777777777776665555444332
Q ss_pred ---------------------ccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCC-ccc---cCCCCeEEecc
Q 041374 308 ---------------------TIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIP-HAI---GELRNLQLRGN 362 (513)
Q Consensus 308 ---------------------~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~---~~l~~L~l~~~ 362 (513)
.++.++++.|++.+..|..+..+++|++|++++|.+.+.++ ..+ .+++.|+++++
T Consensus 361 s~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n 440 (680)
T 1ziw_A 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440 (680)
T ss_dssp TTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSC
T ss_pred CCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCC
Confidence 24445555556666666677777777777777777765444 223 33444443332
Q ss_pred -------------------------------CCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCccc
Q 041374 363 -------------------------------VPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGS 411 (513)
Q Consensus 363 -------------------------------~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~ 411 (513)
.|..+..+++|+.|++++|+++ .+++..+.....|++|++++|++++.
T Consensus 441 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~~ 519 (680)
T 1ziw_A 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA-NINDDMLEGLEKLEILDLQHNNLARL 519 (680)
T ss_dssp SEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCGGG
T ss_pred CcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCC-cCChhhhccccccCEEeCCCCCcccc
Confidence 3444555666666666666665 33333333344446666666666532
Q ss_pred CC--------ccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcc
Q 041374 412 IP--------TEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGH 483 (513)
Q Consensus 412 ~~--------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 483 (513)
.+ ..+..+++|++|++++|.+....+..|.++++|+.|++++|++++..+..|..+++|+.|++++|++++.
T Consensus 520 ~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~ 599 (680)
T 1ziw_A 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 599 (680)
T ss_dssp GSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBC
T ss_pred chhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCcc
Confidence 11 1245566666666666666632223466666677777777766654455556666777777777776666
Q ss_pred cchhhh-cccCc-eEEccCCcccccCC
Q 041374 484 IPEFLE-NLSFN-KMNETINDFCHHKP 508 (513)
Q Consensus 484 ~p~~l~-~l~~l-~l~l~~n~l~~~~p 508 (513)
.|..+. .++.+ .+++++|++...-+
T Consensus 600 ~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 600 EKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred ChhHhcccccccCEEEccCCCcccCCc
Confidence 665555 56666 77777776665544
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.6e-43 Score=370.17 Aligned_cols=380 Identities=17% Similarity=0.230 Sum_probs=285.6
Q ss_pred CCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcc------------------------------------
Q 041374 100 SFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRL------------------------------------ 143 (513)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l------------------------------------ 143 (513)
.+++.|+|+++.+.|. +|++++++++|++|++++|.+
T Consensus 81 ~~V~~L~L~~~~l~g~-------lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~ 153 (636)
T 4eco_A 81 GRVTGLSLEGFGASGR-------VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYD 153 (636)
T ss_dssp CCEEEEECTTSCCEEE-------ECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCC
T ss_pred CCEEEEEecCcccCCc-------CChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccC
Confidence 4788999999999965 456899999999999999854
Q ss_pred ------------------------------------------cccCccccCCCCCCCEEEcccccCCcc-----------
Q 041374 144 ------------------------------------------HSRVPESLGQLRSLSFLDISENAFSGM----------- 170 (513)
Q Consensus 144 ------------------------------------------~~~~p~~l~~l~~L~~L~Ls~n~i~~~----------- 170 (513)
++ +|..++++++|++|++++|.+++.
T Consensus 154 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 232 (636)
T 4eco_A 154 PREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENS 232 (636)
T ss_dssp GGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTS
T ss_pred chhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccccccc
Confidence 23 566667777777777777777664
Q ss_pred ------Cccccc--CCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCc-ccc-cCcccccCC------CCCCeee
Q 041374 171 ------FHSSIF--NISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNN-YTG-SLPHSLSNA------SNLQLLD 234 (513)
Q Consensus 171 ------~~~~~~--~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~-l~~-~~~~~l~~l------~~L~~L~ 234 (513)
+|..+. ++++|++|++++|.+.+.+|..+. .+++|++|++++|+ +++ .+|..++.+ ++|++|+
T Consensus 233 ~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~ 311 (636)
T 4eco_A 233 EYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311 (636)
T ss_dssp HHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT-TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEE
T ss_pred chhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh-cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEE
Confidence 666666 777777777777777767776665 67777777777776 666 666666554 6777777
Q ss_pred Cccccccccccc--cccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceE
Q 041374 235 LSLNHFSGQVKI--DFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILF 312 (513)
Q Consensus 235 L~~n~~~~~~~~--~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l 312 (513)
+++|.++ .+|. .++++++|++|++++|.+.+. .+ .+..+++|+.|++++|.+. .+|..+..++..++.+
T Consensus 312 L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~------ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L 382 (636)
T 4eco_A 312 IGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGK------LP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENL 382 (636)
T ss_dssp CCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEE------CC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEE
T ss_pred CCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccc------hh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEE
Confidence 7777776 5666 677777777777777766642 12 4556667777777777766 5566666655447777
Q ss_pred EeccccceecCCccccCCC--CCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHH
Q 041374 313 TMGLNQIYGTIPPEVKNLV--NLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQ 390 (513)
Q Consensus 313 ~l~~~~~~~~~~~~~~~~~--~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~ 390 (513)
++++|.+. .+|..+.... +|++|++++|.+.+..|..++... .....+++|++|++++|++. .+|..
T Consensus 383 ~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~---------~~~~~~~~L~~L~Ls~N~l~-~lp~~ 451 (636)
T 4eco_A 383 SFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD---------PTPFKGINVSSINLSNNQIS-KFPKE 451 (636)
T ss_dssp ECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC---------SSCCCCCCEEEEECCSSCCC-SCCTH
T ss_pred EccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccc---------cccccCCCCCEEECcCCccC-cCCHH
Confidence 77777766 5666555543 677777777777665555433110 00115679999999999998 88888
Q ss_pred HHhhhcccceEEccCCcCcccCCccccC-C-------CCCCEEeCCCCccCccCCcccc--CCCCCCEEeCCCCcccccc
Q 041374 391 ILGILTLSILLDLSGNLLTGSIPTEVGN-L-------KNLVQLDLSENHFSIEIPVSLS--ACTTLEYLYMEGNSVTGSI 460 (513)
Q Consensus 391 ~~~~~~~l~~L~l~~n~l~~~~~~~~~~-l-------~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~ 460 (513)
++...+.|++|++++|+++ .+|..... . ++|++|++++|.+. .+|..+. .+++|+.|+|++|++++ +
T Consensus 452 ~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-i 528 (636)
T 4eco_A 452 LFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-F 528 (636)
T ss_dssp HHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-C
T ss_pred HHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-c
Confidence 8877777799999999999 55554332 2 39999999999999 7898887 99999999999999996 8
Q ss_pred cccccCCCCCCEEEC------CCCCCCcccchhhhcccCc-eEEccCCcccccCCCCCc
Q 041374 461 PLALNTLKSIKELDL------SRNNLSGHIPEFLENLSFN-KMNETINDFCHHKPKVFA 512 (513)
Q Consensus 461 ~~~~~~l~~L~~L~l------~~n~l~~~~p~~l~~l~~l-~l~l~~n~l~~~~p~~~~ 512 (513)
|..+..+++|+.|++ ++|++.+.+|..+..++.| ++++++|++ +.+|..+.
T Consensus 529 p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~ 586 (636)
T 4eco_A 529 PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT 586 (636)
T ss_dssp CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred ChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh
Confidence 999999999999999 5688899999999999999 999999999 89998653
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.7e-43 Score=365.57 Aligned_cols=411 Identities=19% Similarity=0.190 Sum_probs=293.4
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 155 (513)
.+++.|++++|.+.+..+..+.++++|++|++++|.+++. .|..|.++++|++|++++|.+++..|..|++++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 98 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI-------EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS 98 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEE-------CTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCT
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCcc-------ChhhccccccCCEEECCCCccCccCHHHhccCC
Confidence 4799999999999998889999999999999999999843 245788999999999999999997777899999
Q ss_pred CCCEEEcccccCCcc-CcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeee
Q 041374 156 SLSFLDISENAFSGM-FHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLD 234 (513)
Q Consensus 156 ~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 234 (513)
+|++|++++|.+++. .+..+.++++|++|++++|.+.+.+|...+..+++|++|++++|++++..|..+..+++|++|+
T Consensus 99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 178 (549)
T 2z81_A 99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178 (549)
T ss_dssp TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEe
Confidence 999999999999874 5678999999999999999865577754444899999999999999988999999999999999
Q ss_pred CccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhh-----------
Q 041374 235 LSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIA----------- 303 (513)
Q Consensus 235 L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~----------- 303 (513)
+++|.+.......+..+++|++|++++|.+.+...... .....+++|+.|++++|.+.+..+..+.
T Consensus 179 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~ 255 (549)
T 2z81_A 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPL---PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255 (549)
T ss_dssp EECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCC---SSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCE
T ss_pred cccCcccccchhhHhhcccccEEEccCCcccccccccc---chhhhhhcccceeccccccchhHHHHHHHHhhhhccccc
Confidence 99998764333334678999999999998876432111 1112233444444444433322221111
Q ss_pred ---------------------------------------------------ccccccceEEeccccceecCCccc-cCCC
Q 041374 304 ---------------------------------------------------NLSSTIILFTMGLNQIYGTIPPEV-KNLV 331 (513)
Q Consensus 304 ---------------------------------------------------~~~~~l~~l~l~~~~~~~~~~~~~-~~~~ 331 (513)
.....++.++++.|.+. .+|..+ ..++
T Consensus 256 l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~ 334 (549)
T 2z81_A 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLK 334 (549)
T ss_dssp EEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCT
T ss_pred cccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCc
Confidence 01112555555555544 344433 3466
Q ss_pred CCCEEeccCCcCccCCC------ccccCCCCeEEeccCC-------ccccCCCCCCEEecccCcCcccChHHHHhhhccc
Q 041374 332 NLNGFGLEYNQLTGPIP------HAIGELRNLQLRGNVP-------SSLGNCQNLMLLSVSNNKLTGALPPQILGILTLS 398 (513)
Q Consensus 332 ~L~~L~l~~n~~~~~~~------~~~~~l~~L~l~~~~~-------~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l 398 (513)
+|++|++++|.+.+..| ..+.+++.|+++++-. ..+..+++|++|++++|+++ .+|..+.. .+.|
T Consensus 335 ~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-~~~L 412 (549)
T 2z81_A 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQW-PEKM 412 (549)
T ss_dssp TCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCC-CTTC
T ss_pred cccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcc-cccc
Confidence 66666666666665432 2234555555555422 12455666666666666665 45544332 2334
Q ss_pred ceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCC
Q 041374 399 ILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRN 478 (513)
Q Consensus 399 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 478 (513)
++|++++|+++ .++..+ .++|++|++++|.+++. +..+++|++|++++|+++ .+|. ...+++|+.|++++|
T Consensus 413 ~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N 483 (549)
T 2z81_A 413 RFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRN 483 (549)
T ss_dssp CEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSS
T ss_pred cEEECCCCCcc-cccchh--cCCceEEECCCCChhhh----cccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCC
Confidence 66666666665 233222 24666677777666642 246889999999999998 6776 467899999999999
Q ss_pred CCCcccchhhhcccCc-eEEccCCcccccCC
Q 041374 479 NLSGHIPEFLENLSFN-KMNETINDFCHHKP 508 (513)
Q Consensus 479 ~l~~~~p~~l~~l~~l-~l~l~~n~l~~~~p 508 (513)
++++.+|..+..++.| .+++++|++++..|
T Consensus 484 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 484 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 9998888889999999 99999999988776
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.7e-42 Score=360.83 Aligned_cols=409 Identities=19% Similarity=0.147 Sum_probs=320.0
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 155 (513)
.+++.|++++|.+.+..+..+.++++|++|++++|.+++. .|..|+++++|++|++++|.+.+..+..+++++
T Consensus 56 ~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~-------~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 128 (606)
T 3vq2_A 56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF-------SPGSFSGLTSLENLVAVETKLASLESFPIGQLI 128 (606)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCC-------CTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCT
T ss_pred ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccccc-------ChhhcCCcccCCEEEccCCccccccccccCCCC
Confidence 6899999999999998888999999999999999998832 356788999999999999999887778899999
Q ss_pred CCCEEEcccccCCc-cCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCC----CEEEccCCcccccCccc-------
Q 041374 156 SLSFLDISENAFSG-MFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNL----EDLSVRQNNYTGSLPHS------- 223 (513)
Q Consensus 156 ~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L----~~L~l~~n~l~~~~~~~------- 223 (513)
+|++|++++|.+++ .+|..+.++++|++|++++|++.+..|..+. .+.+| +++++++|.+++..+..
T Consensus 129 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~ 207 (606)
T 3vq2_A 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ-FLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLH 207 (606)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTH-HHHHCTTCCCEEECTTCCCCEECTTTTTTCEEE
T ss_pred CCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhh-hhhccccccceeeccCCCcceeCcccccCceee
Confidence 99999999999876 4688899999999999999988754443332 22222 24555555444222221
Q ss_pred -------------------------------------------------------------------------ccCCCCC
Q 041374 224 -------------------------------------------------------------------------LSNASNL 230 (513)
Q Consensus 224 -------------------------------------------------------------------------l~~l~~L 230 (513)
+..+++|
T Consensus 208 ~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L 287 (606)
T 3vq2_A 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANV 287 (606)
T ss_dssp EEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTC
T ss_pred eeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCC
Confidence 2334445
Q ss_pred CeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccc
Q 041374 231 QLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTII 310 (513)
Q Consensus 231 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~ 310 (513)
+.|++++|.+. .++ .+..+++|++|++++|.+... + .+ .+++|+.|++++|...+.. .+..++. ++
T Consensus 288 ~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l~~l-------p-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~-L~ 353 (606)
T 3vq2_A 288 SAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQLKQF-------P-TL-DLPFLKSLTLTMNKGSISF--KKVALPS-LS 353 (606)
T ss_dssp SEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCCSSC-------C-CC-CCSSCCEEEEESCSSCEEC--CCCCCTT-CC
T ss_pred CEEEecCccch-hhh-hccccccCCEEEcccccCccc-------c-cC-CCCccceeeccCCcCccch--hhccCCC-CC
Confidence 55555555553 233 566667777777777777331 1 33 7788999999998655443 4445555 89
Q ss_pred eEEeccccceec--CCccccCCCCCCEEeccCCcCccCCCcc---ccCCCCeEEecc-----CC-ccccCCCCCCEEecc
Q 041374 311 LFTMGLNQIYGT--IPPEVKNLVNLNGFGLEYNQLTGPIPHA---IGELRNLQLRGN-----VP-SSLGNCQNLMLLSVS 379 (513)
Q Consensus 311 ~l~l~~~~~~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~l~~L~l~~~-----~~-~~l~~~~~L~~L~ls 379 (513)
.++++.|.+.+. .|..+..+++|++|++++|.+.+ +|.. +.+++.|+++++ .+ ..+..+++|++|+++
T Consensus 354 ~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 432 (606)
T 3vq2_A 354 YLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432 (606)
T ss_dssp EEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECT
T ss_pred EEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECc
Confidence 999999988866 47788889999999999998875 3343 345666666653 34 567889999999999
Q ss_pred cCcCcccChHHHHhhhcccceEEccCCcCcc-cCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccc
Q 041374 380 NNKLTGALPPQILGILTLSILLDLSGNLLTG-SIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTG 458 (513)
Q Consensus 380 ~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 458 (513)
+|.+.+..|..+... +.|++|++++|++++ .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|++++
T Consensus 433 ~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 511 (606)
T 3vq2_A 433 YTNTKIDFDGIFLGL-TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF 511 (606)
T ss_dssp TSCCEECCTTTTTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCCccchhhhcCC-CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCC
Confidence 999997777666554 455999999999987 478889999999999999999998889999999999999999999998
Q ss_pred cccccccCCCCCCEEECCCCCCCcccchhhhccc-Cc-eEEccCCcccccCCC
Q 041374 459 SIPLALNTLKSIKELDLSRNNLSGHIPEFLENLS-FN-KMNETINDFCHHKPK 509 (513)
Q Consensus 459 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~-~l-~l~l~~n~l~~~~p~ 509 (513)
..|..+..+++|++|++++|+++ .+|..+..++ .| ++++++|++.+..|.
T Consensus 512 ~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 512 LDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp EEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred cCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 88999999999999999999999 6888799987 58 999999999886653
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.6e-42 Score=366.73 Aligned_cols=378 Identities=16% Similarity=0.226 Sum_probs=295.7
Q ss_pred CCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEe-ecCccccc--------------------------------
Q 041374 100 SFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDI-AGNRLHSR-------------------------------- 146 (513)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l-~~n~l~~~-------------------------------- 146 (513)
.+++.|+|+++.+.|. +|+.++++++|++|++ ++|.+.+.
T Consensus 323 ~~V~~L~Ls~~~L~G~-------ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~ 395 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGR-------VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYD 395 (876)
T ss_dssp SCEEEEECTTTCCEEE-------ECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCC
T ss_pred CCEEEEECccCCCCCc-------CchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccC
Confidence 5789999999999965 4568899999999999 77754433
Q ss_pred --------------------------------------------CccccCCCCCCCEEEcccccCCc-------------
Q 041374 147 --------------------------------------------VPESLGQLRSLSFLDISENAFSG------------- 169 (513)
Q Consensus 147 --------------------------------------------~p~~l~~l~~L~~L~Ls~n~i~~------------- 169 (513)
+|..++++++|++|++++|.+++
T Consensus 396 ~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n 475 (876)
T 4ecn_A 396 QRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSD 475 (876)
T ss_dssp GGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSH
T ss_pred cchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccc
Confidence 66677777888888888888777
Q ss_pred ----cCccccc--CCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCc-ccc-cCcccccCCC-------CCCeee
Q 041374 170 ----MFHSSIF--NISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNN-YTG-SLPHSLSNAS-------NLQLLD 234 (513)
Q Consensus 170 ----~~~~~~~--~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~-l~~-~~~~~l~~l~-------~L~~L~ 234 (513)
.+|..+. ++++|++|++++|.+.+.+|..+. .+++|++|++++|+ +++ .+|..+++++ +|++|+
T Consensus 476 ~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~-~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~ 554 (876)
T 4ecn_A 476 YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFY 554 (876)
T ss_dssp HHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG-GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEE
T ss_pred cccccCChhhhhccCCCCCEEECcCCCCCccChHHHh-CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEE
Confidence 2677766 788888888888877777777666 77788888888887 776 6676555444 788888
Q ss_pred Cccccccccccc--cccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceE
Q 041374 235 LSLNHFSGQVKI--DFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILF 312 (513)
Q Consensus 235 L~~n~~~~~~~~--~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l 312 (513)
+++|.+. .+|. .++++++|+.|++++|.+.. ++ .+..+++|+.|++++|.+. .+|..+..++..++.+
T Consensus 555 Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~-------lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L 624 (876)
T 4ecn_A 555 MGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRH-------LE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGL 624 (876)
T ss_dssp CCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCB-------CC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEE
T ss_pred eeCCcCC-ccCChhhhhcCCCCCEEECCCCCccc-------ch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEE
Confidence 8888777 6666 77778888888888877762 11 5667777888888888777 6666676666557778
Q ss_pred EeccccceecCCccccCCCC--CCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHH
Q 041374 313 TMGLNQIYGTIPPEVKNLVN--LNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQ 390 (513)
Q Consensus 313 ~l~~~~~~~~~~~~~~~~~~--L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~ 390 (513)
++++|.+. .+|..+..... |+.|++++|.+.+.+|.....+. ...+++|+.|++++|.+. .+|..
T Consensus 625 ~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~-----------~~~~~~L~~L~Ls~N~L~-~lp~~ 691 (876)
T 4ecn_A 625 GFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD-----------DYKGINASTVTLSYNEIQ-KFPTE 691 (876)
T ss_dssp ECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT-----------TCCCCCEEEEECCSSCCC-SCCHH
T ss_pred ECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhc-----------cccCCCcCEEEccCCcCC-ccCHH
Confidence 88887777 66666655543 77888888877765543221111 013458999999999998 89998
Q ss_pred HHhhhcccceEEccCCcCcccCCccccC--------CCCCCEEeCCCCccCccCCcccc--CCCCCCEEeCCCCcccccc
Q 041374 391 ILGILTLSILLDLSGNLLTGSIPTEVGN--------LKNLVQLDLSENHFSIEIPVSLS--ACTTLEYLYMEGNSVTGSI 460 (513)
Q Consensus 391 ~~~~~~~l~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~ 460 (513)
++...+.|+.|++++|+++ .+|..+.. +++|+.|++++|++. .+|..+. .+++|+.|+|++|++++ +
T Consensus 692 ~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-l 768 (876)
T 4ecn_A 692 LFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-F 768 (876)
T ss_dssp HHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-C
T ss_pred HHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-c
Confidence 8877777799999999998 66655443 238999999999999 8898887 99999999999999996 8
Q ss_pred cccccCCCCCCEEECCC------CCCCcccchhhhcccCc-eEEccCCcccccCCCCCc
Q 041374 461 PLALNTLKSIKELDLSR------NNLSGHIPEFLENLSFN-KMNETINDFCHHKPKVFA 512 (513)
Q Consensus 461 ~~~~~~l~~L~~L~l~~------n~l~~~~p~~l~~l~~l-~l~l~~n~l~~~~p~~~~ 512 (513)
|..+..+++|+.|+|++ |++.+.+|..+..++.| .+++++|++ +.||..+.
T Consensus 769 p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~ 826 (876)
T 4ecn_A 769 PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT 826 (876)
T ss_dssp CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred chhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc
Confidence 99999999999999976 88899999999999999 999999999 89998654
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.9e-41 Score=348.28 Aligned_cols=393 Identities=22% Similarity=0.220 Sum_probs=302.9
Q ss_pred CCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCC
Q 041374 100 SFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNIS 179 (513)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 179 (513)
+++++|++++|.+++.. +..|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|.+++
T Consensus 28 ~~l~~L~Ls~n~l~~~~-------~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLG-------SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (570)
T ss_dssp SSCCEEECCSCCCCEEC-------TTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred ccccEEEccCCccCccC-------hhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcc
Confidence 57999999999998432 34789999999999999999998888899999999999999999999889999999
Q ss_pred CCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccc-cCcccccCCCCCCeeeCccccccccccccccCCCCC----
Q 041374 180 SLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTG-SLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNL---- 254 (513)
Q Consensus 180 ~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L---- 254 (513)
+|++|++++|.+. .++......+++|++|++++|.+++ .+|..++++++|++|++++|.+.+..+..++.+++|
T Consensus 101 ~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~ 179 (570)
T 2z63_A 101 SLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179 (570)
T ss_dssp TCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCC
T ss_pred ccccccccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhh
Confidence 9999999999998 5555333389999999999999986 479999999999999999999998888888888888
Q ss_pred cEEEcCCCCCCCCCCCCchhhcccCCCccccccccccc------------------------------------------
Q 041374 255 FRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTN------------------------------------------ 292 (513)
Q Consensus 255 ~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n------------------------------------------ 292 (513)
+.+++++|.+.......+. .. +|+.+++++|
T Consensus 180 ~~L~l~~n~l~~~~~~~~~------~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~ 252 (570)
T 2z63_A 180 LSLDLSLNPMNFIQPGAFK------EI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252 (570)
T ss_dssp CEEECTTCCCCEECTTTTT------TC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTG
T ss_pred hhcccCCCCceecCHHHhc------cC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhc
Confidence 8999999998876543322 11 3444444333
Q ss_pred ----------------ccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCC
Q 041374 293 ----------------IFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRN 356 (513)
Q Consensus 293 ----------------~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~ 356 (513)
.+.+..+..+..++. ++.++++.+.+. .+|..+..+ +|++|++++|.+.......+.+++.
T Consensus 253 ~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~ 329 (570)
T 2z63_A 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN-VSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKR 329 (570)
T ss_dssp GGGGSEEEEEEEEETTEEESCSTTTTGGGTT-CSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCE
T ss_pred cccccchhhhhhhcchhhhhhchhhhcCcCc-ccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCcccccccCE
Confidence 344455666666666 999999999887 578878777 8999999988887332234455555
Q ss_pred eEEeccC-----------------------------CccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCc
Q 041374 357 LQLRGNV-----------------------------PSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNL 407 (513)
Q Consensus 357 L~l~~~~-----------------------------~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~ 407 (513)
|+++++. +..+..+++|++|++++|.+.+ ++.. +...+.|++|++++|.
T Consensus 330 L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~-~~~l~~L~~L~l~~n~ 407 (570)
T 2z63_A 330 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSN-FLGLEQLEHLDFQHSN 407 (570)
T ss_dssp EEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEE-EETCTTCCEEECTTSE
T ss_pred EeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-cccc-ccccCCCCEEEccCCc
Confidence 5554431 2223344555555555555442 2222 2233344667777776
Q ss_pred CcccCC-ccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCccc-ccccccccCCCCCCEEECCCCCCCcccc
Q 041374 408 LTGSIP-TEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVT-GSIPLALNTLKSIKELDLSRNNLSGHIP 485 (513)
Q Consensus 408 l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p 485 (513)
+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|++. +.+|..+..+++|+.|++++|++++..|
T Consensus 408 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~ 487 (570)
T 2z63_A 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487 (570)
T ss_dssp EESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred cccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCCh
Confidence 665444 35677888888888888888777888888899999999999887 5688888889999999999999998888
Q ss_pred hhhhcccCc-eEEccCCcccccCCCCCc
Q 041374 486 EFLENLSFN-KMNETINDFCHHKPKVFA 512 (513)
Q Consensus 486 ~~l~~l~~l-~l~l~~n~l~~~~p~~~~ 512 (513)
..+..++.| ++++++|++++..|..++
T Consensus 488 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 515 (570)
T 2z63_A 488 TAFNSLSSLQVLNMASNQLKSVPDGIFD 515 (570)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred hhhhcccCCCEEeCCCCcCCCCCHHHhh
Confidence 889999999 999999999987776553
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=7e-41 Score=337.81 Aligned_cols=374 Identities=18% Similarity=0.175 Sum_probs=233.3
Q ss_pred CCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccC-ccccCCCCCCCEEEcccccCCccCcccccCC
Q 041374 100 SFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRV-PESLGQLRSLSFLDISENAFSGMFHSSIFNI 178 (513)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l 178 (513)
++|++|++++|.+++. .|..|.++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..+.++
T Consensus 30 ~~l~~L~Ls~n~i~~~-------~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 102 (455)
T 3v47_A 30 AHVNYVDLSLNSIAEL-------NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGL 102 (455)
T ss_dssp TTCCEEECCSSCCCEE-------CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTC
T ss_pred CccCEEEecCCccCcC-------ChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCc
Confidence 4566666666666522 2335566666666666666665333 4456666666666666666666666666666
Q ss_pred CCCcEEeCCCCcCcccCCcc-ccCCCCCCCEEEccCCcccccCccc-ccCCCCCCeeeCccccccccccccccCC--CCC
Q 041374 179 SSLELIYPLENRLEGSLPVN-IGFSLPNLEDLSVRQNNYTGSLPHS-LSNASNLQLLDLSLNHFSGQVKIDFNRL--PNL 254 (513)
Q Consensus 179 ~~L~~L~l~~n~l~~~lp~~-~~~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L~~n~~~~~~~~~~~~l--~~L 254 (513)
++|++|++++|.+.+.+|.. .+..+++|++|++++|.+++..|.. +.++++|++|++++|.+.+..+..+..+ .+|
T Consensus 103 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L 182 (455)
T 3v47_A 103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHF 182 (455)
T ss_dssp TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEE
T ss_pred ccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccc
Confidence 66666666666665433322 1225667777777777776555554 5667777777777777766666666554 567
Q ss_pred cEEEcCCCCCCCCCCCCch--hhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCC
Q 041374 255 FRLNFGKNNLGTGAIGDLD--FIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVN 332 (513)
Q Consensus 255 ~~L~L~~n~~~~~~~~~~~--~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~ 332 (513)
+.|++++|.+.......+. ....+..+++|+.|++++|.+.+..|..+.... ..++
T Consensus 183 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~----------------------~~~~ 240 (455)
T 3v47_A 183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI----------------------AGTK 240 (455)
T ss_dssp EEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHT----------------------TTCC
T ss_pred cccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccc----------------------cccc
Confidence 7777777766654332211 122334556777777777777766665554431 1234
Q ss_pred CCEEeccCCcCccCCCccccCCCCeEEeccCCcccc--CCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcc
Q 041374 333 LNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLG--NCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTG 410 (513)
Q Consensus 333 L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~ 410 (513)
|+.+++++|...+..... ..+ .+..+..+. ..++|+.|++++|.+.+..|..+.. .+.|++|++++|++++
T Consensus 241 L~~L~l~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~ 313 (455)
T 3v47_A 241 IQSLILSNSYNMGSSFGH-TNF-----KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH-FTDLEQLTLAQNEINK 313 (455)
T ss_dssp EEEEECTTCTTTSCCTTC-CSS-----CCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT-CTTCCEEECTTSCCCE
T ss_pred eeeEeeccccccccccch-hhh-----ccCcccccccccccCceEEEecCccccccchhhccc-CCCCCEEECCCCcccc
Confidence 445555544433221100 000 000001111 2357777888887777555554433 3444788888888777
Q ss_pred cCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhc
Q 041374 411 SIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLEN 490 (513)
Q Consensus 411 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~ 490 (513)
..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..
T Consensus 314 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 393 (455)
T 3v47_A 314 IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDR 393 (455)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred cChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhcc
Confidence 66777777888888888888887666777777888888888888887777777777888888888888887666666777
Q ss_pred ccCc-eEEccCCcccccCCC
Q 041374 491 LSFN-KMNETINDFCHHKPK 509 (513)
Q Consensus 491 l~~l-~l~l~~n~l~~~~p~ 509 (513)
++.| ++++++|++++.+|.
T Consensus 394 l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 394 LTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CTTCCEEECCSSCBCCCTTT
T ss_pred CCcccEEEccCCCcccCCCc
Confidence 7788 888888888887773
No 18
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.5e-41 Score=364.09 Aligned_cols=412 Identities=24% Similarity=0.214 Sum_probs=293.4
Q ss_pred cEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCc-cccCCCC
Q 041374 77 RVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVP-ESLGQLR 155 (513)
Q Consensus 77 ~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p-~~l~~l~ 155 (513)
+++.|+|++|.+.+..|..+.++++|++|++++|.+++.+|. ...++++++|++|++++|.+.+..+ ..|++++
T Consensus 74 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~-----~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~ 148 (844)
T 3j0a_A 74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLK-----DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN 148 (844)
T ss_dssp TCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCST-----TCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCS
T ss_pred CCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCccccc-----CccccccCCCCEEECCCCcccccccchhHhhCC
Confidence 455555555555554455555555555555555555432221 0125566666666666666655433 3456666
Q ss_pred CCCEEEcccccCCccCcccccCC--CCCcEEeCCCCcCcccCCccccCCCC------CCCEEEccCCcccccCcccccC-
Q 041374 156 SLSFLDISENAFSGMFHSSIFNI--SSLELIYPLENRLEGSLPVNIGFSLP------NLEDLSVRQNNYTGSLPHSLSN- 226 (513)
Q Consensus 156 ~L~~L~Ls~n~i~~~~~~~~~~l--~~L~~L~l~~n~l~~~lp~~~~~~l~------~L~~L~l~~n~l~~~~~~~l~~- 226 (513)
+|++|++++|.+++..+..+..+ ++|+.|+++.|.+.+..|..+. .+. .|++|++++|.+++..+..+..
T Consensus 149 ~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 227 (844)
T 3j0a_A 149 SLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG-KCMNPFRNMVLEILDVSGNGWTVDITGNFSNA 227 (844)
T ss_dssp SCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCC-SSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGT
T ss_pred CCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchh-hcCCccccCceeEEecCCCcCchhHHHHHHhh
Confidence 66666666666666555555554 5566666666666555554433 222 3788888888766544433321
Q ss_pred -------------------------------------CCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCC
Q 041374 227 -------------------------------------ASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAI 269 (513)
Q Consensus 227 -------------------------------------l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 269 (513)
.++|++|++++|.+.+..+..+..+++|+.|++++|.+.+...
T Consensus 228 l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 307 (844)
T 3j0a_A 228 ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD 307 (844)
T ss_dssp SCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT
T ss_pred cCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh
Confidence 2578888888888887778888888999999999888876433
Q ss_pred CCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCc
Q 041374 270 GDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPH 349 (513)
Q Consensus 270 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 349 (513)
..+..+++|+.|++++|.+.+..+..+..++. ++.++++.|.+.+..+..+..+++|++|++++|.+++.. .
T Consensus 308 ------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-~ 379 (844)
T 3j0a_A 308 ------EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK-VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH-F 379 (844)
T ss_dssp ------TTTTTCSSCCEEEEESCCCSCCCSCSCSSCTT-CCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS-S
T ss_pred ------HHhcCCCCCCEEECCCCCCCccCHHHhcCCCC-CCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc-C
Confidence 45677888999999999998888888888876 999999999888777778888899999999998887422 1
Q ss_pred cccCCCCeEEeccC----C----------------c------cccCCCCCCEEecccCcCcccChHHHHhhhcccceEEc
Q 041374 350 AIGELRNLQLRGNV----P----------------S------SLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDL 403 (513)
Q Consensus 350 ~~~~l~~L~l~~~~----~----------------~------~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l 403 (513)
+..++.|.++++- | . .+..+++|+.|++++|++++..+.........|+.|++
T Consensus 380 -~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L 458 (844)
T 3j0a_A 380 -IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFL 458 (844)
T ss_dssp -CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEE
T ss_pred -CCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccC
Confidence 4455555555431 1 1 13478999999999999985444333344566799999
Q ss_pred cCCcCc-----ccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCC
Q 041374 404 SGNLLT-----GSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRN 478 (513)
Q Consensus 404 ~~n~l~-----~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 478 (513)
++|.++ +..+..+..+++|+.|++++|.+++..|..|..+++|+.|+|++|++++..+..+. ++|+.|++++|
T Consensus 459 s~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N 536 (844)
T 3j0a_A 459 GENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRN 536 (844)
T ss_dssp ESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEE
T ss_pred CCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCC
Confidence 999987 33456688899999999999999988888899999999999999999976666665 89999999999
Q ss_pred CCCcccchhhhcccCc-eEEccCCcccccCC
Q 041374 479 NLSGHIPEFLENLSFN-KMNETINDFCHHKP 508 (513)
Q Consensus 479 ~l~~~~p~~l~~l~~l-~l~l~~n~l~~~~p 508 (513)
++++.+|..+. .+ .+++++|++....+
T Consensus 537 ~l~~~~~~~~~---~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 537 QLLAPNPDVFV---SLSVLDITHNKFICECE 564 (844)
T ss_dssp CCCCCCSCCCS---SCCEEEEEEECCCCSSS
T ss_pred cCCCCChhHhC---CcCEEEecCCCcccccc
Confidence 99999997765 56 99999999887544
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.2e-41 Score=343.91 Aligned_cols=408 Identities=18% Similarity=0.208 Sum_probs=288.7
Q ss_pred EEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCC
Q 041374 79 TKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLS 158 (513)
Q Consensus 79 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 158 (513)
+.++++++++.+ +|..+. ++|++|++++|.+++ ..|..|.++++|++|++++|.+++..|..|.++++|+
T Consensus 3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~-------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 72 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISE-------LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE 72 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCC-------CCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCC
T ss_pred ceEecCCCCccc-cccccc--ccccEEECCCCcccc-------cChhhccccccccEEecCCCccCCcChHHhhcccCCC
Confidence 468999999985 666555 899999999999983 2235789999999999999999998899999999999
Q ss_pred EEEcccccCCccCcccccCCCCCcEEeCCCCcCcc-cCCccccCCCCCCCEEEccCCcccccCcccccCCCCC--CeeeC
Q 041374 159 FLDISENAFSGMFHSSIFNISSLELIYPLENRLEG-SLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNL--QLLDL 235 (513)
Q Consensus 159 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~L 235 (513)
+|++++|.++. +|.. .+++|++|++++|.+.+ .+|..+. .+++|++|++++|.+++ ..+..+++| ++|++
T Consensus 73 ~L~Ls~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~-~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l 145 (520)
T 2z7x_B 73 YLDLSHNKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFG-NMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLL 145 (520)
T ss_dssp EEECCSSCCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGG-GCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEE
T ss_pred EEecCCCceee-cCcc--ccCCccEEeccCCccccccchhhhc-cCCcceEEEecCcccch---hhccccccceeeEEEe
Confidence 99999999985 4544 89999999999999985 4677777 89999999999999985 356777888 99999
Q ss_pred ccccc--cccccccccCCC-CCcEEEcCCCCCCCCCCCC-------------------------chhhcccCCCcccccc
Q 041374 236 SLNHF--SGQVKIDFNRLP-NLFRLNFGKNNLGTGAIGD-------------------------LDFIAHLTNCSKLEAF 287 (513)
Q Consensus 236 ~~n~~--~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~-------------------------~~~~~~l~~~~~L~~L 287 (513)
++|.+ .+..|..+..+. +...+++++|.+.+..... ...+..+..+++|+.|
T Consensus 146 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L 225 (520)
T 2z7x_B 146 VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNL 225 (520)
T ss_dssp EECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEE
T ss_pred ecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhc
Confidence 99998 666666666543 1223344444433211100 0011234455555555
Q ss_pred cccccccCCcCchhhhcc--ccccceEEeccccceecCCccc-----cCCCCCCEEeccCCc------------------
Q 041374 288 GLDTNIFGGVLPLSIANL--SSTIILFTMGLNQIYGTIPPEV-----KNLVNLNGFGLEYNQ------------------ 342 (513)
Q Consensus 288 ~l~~n~~~~~~~~~~~~~--~~~l~~l~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~n~------------------ 342 (513)
+++++.+.+..+..+... ...++.+++++|.+.+.+|..+ ..+++|+.+++++|.
T Consensus 226 ~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~ 305 (520)
T 2z7x_B 226 TLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIK 305 (520)
T ss_dssp EEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCS
T ss_pred cccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCcee
Confidence 555555544322222110 1147788888888877777766 555555555554444
Q ss_pred --------CccCC-CccccCCCCeEEecc-----CCccccCCCCCCEEecccCcCcc--cChHHHHhhhcccceEEccCC
Q 041374 343 --------LTGPI-PHAIGELRNLQLRGN-----VPSSLGNCQNLMLLSVSNNKLTG--ALPPQILGILTLSILLDLSGN 406 (513)
Q Consensus 343 --------~~~~~-~~~~~~l~~L~l~~~-----~~~~l~~~~~L~~L~ls~n~l~~--~~p~~~~~~~~~l~~L~l~~n 406 (513)
+.+.. +..+.+++.|+++++ .|.++..+++|++|++++|++.+ .+|..+.. .+.|++|++++|
T Consensus 306 ~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~-l~~L~~L~Ls~N 384 (520)
T 2z7x_B 306 NFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ-MKSLQQLDISQN 384 (520)
T ss_dssp EEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT-CTTCCEEECCSS
T ss_pred EEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhh-CCCCCEEECCCC
Confidence 43222 145566777776553 46667778888888888888774 33444433 444588888888
Q ss_pred cCcccCCc-cccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccc
Q 041374 407 LLTGSIPT-EVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIP 485 (513)
Q Consensus 407 ~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 485 (513)
++++.+|. .+..+++|++|++++|.+++..|..+. ++|++|++++|+++ .+|..+..+++|+.|++++|++++ +|
T Consensus 385 ~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~ 460 (520)
T 2z7x_B 385 SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VP 460 (520)
T ss_dssp CCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CC
T ss_pred cCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cC
Confidence 88764554 366778888888888888777666554 68888888888887 777777788888888888888884 55
Q ss_pred h-hhhcccCc-eEEccCCcccccCC
Q 041374 486 E-FLENLSFN-KMNETINDFCHHKP 508 (513)
Q Consensus 486 ~-~l~~l~~l-~l~l~~n~l~~~~p 508 (513)
. .+..++.| ++++++|++++..+
T Consensus 461 ~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 461 DGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred HHHhccCCcccEEECcCCCCcccCC
Confidence 5 47888888 88888888877543
No 20
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.4e-40 Score=315.91 Aligned_cols=293 Identities=29% Similarity=0.492 Sum_probs=251.1
Q ss_pred CCcHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCc--ccceeeCCCC--CcEEEEEcCCCCCcc--ccCccccCCCCCCE
Q 041374 31 HSNETDRLAYLAIKSQLQDPLGVTKSWNNSISLCQ--WTGVTCGHRH--RRVTKLVLRNQSIGG--FLSPYVGNLSFLRF 104 (513)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~--~~~v~c~~~~--~~v~~L~l~~~~~~~--~~~~~l~~l~~L~~ 104 (513)
.|.+.|+.+|++||+++.+|. .+.+|..+.+||. |.||.|+... ++|+.|+++++.+.+ .++..+.++++|++
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~ 80 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF 80 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCe
Confidence 478899999999999998886 7899988888998 9999998654 799999999999999 89999999999999
Q ss_pred EeCCC-CCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcE
Q 041374 105 VNLAS-NNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLEL 183 (513)
Q Consensus 105 L~L~~-n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 183 (513)
|++++ |.+.+ .+|..++++++|++|++++|.+++.+|..+.++++|++|++++|.+++..|..+..+++|++
T Consensus 81 L~L~~~n~l~~-------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 153 (313)
T 1ogq_A 81 LYIGGINNLVG-------PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153 (313)
T ss_dssp EEEEEETTEES-------CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred eeCCCCCcccc-------cCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCe
Confidence 99995 88884 45678899999999999999999889999999999999999999999999999999999999
Q ss_pred EeCCCCcCcccCCccccCCCC-CCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCC
Q 041374 184 IYPLENRLEGSLPVNIGFSLP-NLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKN 262 (513)
Q Consensus 184 L~l~~n~l~~~lp~~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n 262 (513)
|++++|.+.+.+|..+. .++ +|++|++++|++++.+|..+..++ |++|++++|.+.+..+..+..+++|+.|++++|
T Consensus 154 L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 231 (313)
T 1ogq_A 154 ITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231 (313)
T ss_dssp EECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred EECcCCcccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCC
Confidence 99999999989999888 676 999999999999999999999887 999999999999889999999999999999999
Q ss_pred CCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCc
Q 041374 263 NLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQ 342 (513)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 342 (513)
.+++.. ..+..+++|+.|++++|.+.+..|.++..++. ++.+++++|++++.+|.. ..+++|+.+++++|+
T Consensus 232 ~l~~~~-------~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 232 SLAFDL-------GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF-LHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp EECCBG-------GGCCCCTTCCEEECCSSCCEECCCGGGGGCTT-CCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred ceeeec-------CcccccCCCCEEECcCCcccCcCChHHhcCcC-CCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 887532 23556677777777777777666666666654 666666666666666654 555666666666665
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.5e-39 Score=336.15 Aligned_cols=415 Identities=19% Similarity=0.228 Sum_probs=279.5
Q ss_pred CCcccceeeCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCc
Q 041374 63 LCQWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNR 142 (513)
Q Consensus 63 ~c~~~~v~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~ 142 (513)
.|.|.++ |+ .+++++.. +|..+. ++|++|++++|.+++. .|..|.++++|++|++++|.
T Consensus 3 ~C~~~~~-c~----------~~~~~l~~-ip~~~~--~~L~~L~Ls~n~l~~~-------~~~~~~~l~~L~~L~Ls~n~ 61 (549)
T 2z81_A 3 SCDASGV-CD----------GRSRSFTS-IPSGLT--AAMKSLDLSFNKITYI-------GHGDLRACANLQVLILKSSR 61 (549)
T ss_dssp EECTTSE-EE----------CTTSCCSS-CCSCCC--TTCCEEECCSSCCCEE-------CSSTTSSCTTCCEEECTTSC
T ss_pred cCCCCce-EE----------CCCCcccc-ccccCC--CCccEEECcCCccCcc-------ChhhhhcCCcccEEECCCCC
Confidence 4888887 74 34455553 444443 7999999999999843 24578999999999999999
Q ss_pred ccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcc-cCCccccCCCCCCCEEEccCCcccccCc
Q 041374 143 LHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEG-SLPVNIGFSLPNLEDLSVRQNNYTGSLP 221 (513)
Q Consensus 143 l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~lp~~~~~~l~~L~~L~l~~n~l~~~~~ 221 (513)
+.+..|..|..+++|++|++++|.+++..+..+.++++|++|++++|.+.+ ..|..+. .+++|++|++++|.+.+.+|
T Consensus 62 i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~ 140 (549)
T 2z81_A 62 INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP-NLTNLQTLRIGNVETFSEIR 140 (549)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCT-TCTTCCEEEEEESSSCCEEC
T ss_pred cCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhh-ccCCccEEECCCCccccccC
Confidence 999888999999999999999999999988889999999999999999985 3455555 89999999999998544555
Q ss_pred -ccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcC--
Q 041374 222 -HSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVL-- 298 (513)
Q Consensus 222 -~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~-- 298 (513)
..+.++++|++|++++|.+.+..|..+..+++|++|+++.|.+.... ...+..+++|+.|++++|.+.+..
T Consensus 141 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~------~~~~~~l~~L~~L~L~~n~l~~~~~~ 214 (549)
T 2z81_A 141 RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLL------EIFADILSSVRYLELRDTNLARFQFS 214 (549)
T ss_dssp TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHH------HHHHHSTTTBSEEEEESCBCTTCCCC
T ss_pred HhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccc------hhhHhhcccccEEEccCCcccccccc
Confidence 57999999999999999999999999999999999999999875421 112346789999999999998753
Q ss_pred chhhhccccccceEEeccccceecCC----ccccCCCCCCEEeccCCcCccCC---------Cccc--------------
Q 041374 299 PLSIANLSSTIILFTMGLNQIYGTIP----PEVKNLVNLNGFGLEYNQLTGPI---------PHAI-------------- 351 (513)
Q Consensus 299 ~~~~~~~~~~l~~l~l~~~~~~~~~~----~~~~~~~~L~~L~l~~n~~~~~~---------~~~~-------------- 351 (513)
+..+......++.++++.+.+.+..+ ..+..+++|+.+++++|.+.+.. ...+
T Consensus 215 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 294 (549)
T 2z81_A 215 PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIP 294 (549)
T ss_dssp CCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCS
T ss_pred ccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccc
Confidence 22333333448888888877664322 22233444555555544433210 0111
Q ss_pred ---------------cCCCCeEEecc----CCccc-cCCCCCCEEecccCcCcccChHHH--HhhhcccceEEccCCcCc
Q 041374 352 ---------------GELRNLQLRGN----VPSSL-GNCQNLMLLSVSNNKLTGALPPQI--LGILTLSILLDLSGNLLT 409 (513)
Q Consensus 352 ---------------~~l~~L~l~~~----~~~~l-~~~~~L~~L~ls~n~l~~~~p~~~--~~~~~~l~~L~l~~n~l~ 409 (513)
.+++.|+++++ +|..+ ..+++|++|++++|++.+.+|... ....+.|++|++++|+++
T Consensus 295 ~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 374 (549)
T 2z81_A 295 QFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374 (549)
T ss_dssp CGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCC
T ss_pred hhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccc
Confidence 22333333332 22222 234555555555555544333221 112223355555555544
Q ss_pred ccCC--ccccCCCCCCEEeCCCCccCccCCccccCCCCC---------------------CEEeCCCCcccccccccccC
Q 041374 410 GSIP--TEVGNLKNLVQLDLSENHFSIEIPVSLSACTTL---------------------EYLYMEGNSVTGSIPLALNT 466 (513)
Q Consensus 410 ~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L---------------------~~L~L~~n~l~~~~~~~~~~ 466 (513)
+..+ ..+..+++|++|++++|++. .+|..+..+++| ++|++++|++++. +..
T Consensus 375 ~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~----~~~ 449 (549)
T 2z81_A 375 SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSF----SLF 449 (549)
T ss_dssp CHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCC----CCC
T ss_pred ccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhh----ccc
Confidence 2211 22444455555555555544 344444444444 4444444444432 236
Q ss_pred CCCCCEEECCCCCCCcccchhhhcccCc-eEEccCCcccccCCCCCc
Q 041374 467 LKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETINDFCHHKPKVFA 512 (513)
Q Consensus 467 l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n~l~~~~p~~~~ 512 (513)
+++|++|++++|+++ .+|+ ...++.| ++++++|++++.+|..++
T Consensus 450 l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~ 494 (549)
T 2z81_A 450 LPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFD 494 (549)
T ss_dssp CTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGG
T ss_pred CChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHh
Confidence 789999999999998 6776 4678888 999999999988876543
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.4e-38 Score=331.87 Aligned_cols=414 Identities=21% Similarity=0.216 Sum_probs=269.4
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 155 (513)
..++.|||++|.+.+..+..|.++++|++|+|++|+|++- .+.+|.++++|++|+|++|++++..+..|.+++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-------~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~ 124 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-------EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 124 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-------CTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCc-------ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC
Confidence 4789999999999998888999999999999999999832 134789999999999999999987778899999
Q ss_pred CCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcc-cCCccccCCCCCCCEEEccCCcccccCcccccCCCCC----
Q 041374 156 SLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEG-SLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNL---- 230 (513)
Q Consensus 156 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L---- 230 (513)
+|++|++++|.+++..+..|.++++|++|++++|.+.+ .+|..+. .+++|++|++++|++++..+..+..+.++
T Consensus 125 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~ 203 (635)
T 4g8a_A 125 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 203 (635)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG-GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhc-cchhhhhhcccCccccccccccccchhhhhhhh
Confidence 99999999999998888889999999999999999974 3455555 78999999999999997777766554443
Q ss_pred CeeeCccccccccccccccCCCCCcEEEcCCCCCC-------------------------------CCCCCCch------
Q 041374 231 QLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLG-------------------------------TGAIGDLD------ 273 (513)
Q Consensus 231 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~-------------------------------~~~~~~~~------ 273 (513)
..++++.|.+....+..+ ....++.+++.+|... ......+.
T Consensus 204 ~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~ 282 (635)
T 4g8a_A 204 LSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 282 (635)
T ss_dssp CEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSE
T ss_pred hhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchh
Confidence 356777777664333222 1222333333332111 00000000
Q ss_pred -------------------------------------hhcccCCCcccccccccccccCCcCchhhhccccccceEEecc
Q 041374 274 -------------------------------------FIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGL 316 (513)
Q Consensus 274 -------------------------------------~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~ 316 (513)
....+.....++.|++.++.+.+..+..+. .++.+.+..
T Consensus 283 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~----~L~~l~l~~ 358 (635)
T 4g8a_A 283 IEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLK----SLKRLTFTS 358 (635)
T ss_dssp EEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCT----TCCEEEEES
T ss_pred hhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccch----hhhhccccc
Confidence 001112223444555555544433222111 123333333
Q ss_pred ccceecCCccccCCCCCCEEeccCCcCccC--CC-----------------------c---cccCCCCeEEecc------
Q 041374 317 NQIYGTIPPEVKNLVNLNGFGLEYNQLTGP--IP-----------------------H---AIGELRNLQLRGN------ 362 (513)
Q Consensus 317 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~-----------------------~---~~~~l~~L~l~~~------ 362 (513)
+..... .....+++|+.++++.|.+... .+ . .+..++.+++.+.
T Consensus 359 n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~ 436 (635)
T 4g8a_A 359 NKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS 436 (635)
T ss_dssp CCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTT
T ss_pred ccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccc
Confidence 322211 1122345555555555544321 11 1 1122333333221
Q ss_pred CCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcC-cccCCccccCCCCCCEEeCCCCccCccCCcccc
Q 041374 363 VPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLL-TGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLS 441 (513)
Q Consensus 363 ~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 441 (513)
.+..+..+++++.++++.|.+.+..+. .+.....++.|++++|++ .+..|..+..+++|++|++++|++.+..|..|.
T Consensus 437 ~~~~~~~l~~l~~l~ls~n~l~~~~~~-~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~ 515 (635)
T 4g8a_A 437 EFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 515 (635)
T ss_dssp SSCTTTTCTTCCEEECTTSCCEECCTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred ccccccccccccccccccccccccccc-ccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHc
Confidence 123345667777777777777644443 334444557778877764 334566777777888888888888777777777
Q ss_pred CCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcc-cCc-eEEccCCcccc
Q 041374 442 ACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENL-SFN-KMNETINDFCH 505 (513)
Q Consensus 442 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l-~~l-~l~l~~n~l~~ 505 (513)
++++|++|+|++|++++..|..|..+++|+.||+++|++++..|+.+..+ ++| ++++++|+++.
T Consensus 516 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 516 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 78888888888888877777777777888888888888877777777776 467 78888887753
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.5e-38 Score=327.26 Aligned_cols=407 Identities=18% Similarity=0.190 Sum_probs=290.3
Q ss_pred EEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCC
Q 041374 78 VTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSL 157 (513)
Q Consensus 78 v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 157 (513)
.+.++++++++.+ +|..+. ++|++|++++|.+++. .+..|.++++|++|++++|.+++..|..|.++++|
T Consensus 33 ~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~-------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 102 (562)
T 3a79_B 33 ESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISEL-------RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDL 102 (562)
T ss_dssp CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCC-------CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred CcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCcccc-------ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCC
Confidence 3789999999987 555443 8999999999999832 23588999999999999999999889999999999
Q ss_pred CEEEcccccCCccCcccccCCCCCcEEeCCCCcCcc-cCCccccCCCCCCCEEEccCCcccccCcccccCCCCC--Ceee
Q 041374 158 SFLDISENAFSGMFHSSIFNISSLELIYPLENRLEG-SLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNL--QLLD 234 (513)
Q Consensus 158 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~ 234 (513)
++|++++|.++.. |.. .+++|++|++++|.+.+ .+|..+. .+++|++|++++|++++. .+..+++| ++|+
T Consensus 103 ~~L~Ls~N~l~~l-p~~--~l~~L~~L~Ls~N~l~~l~~p~~~~-~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~ 175 (562)
T 3a79_B 103 EYLDVSHNRLQNI-SCC--PMASLRHLDLSFNDFDVLPVCKEFG-NLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCIL 175 (562)
T ss_dssp CEEECTTSCCCEE-CSC--CCTTCSEEECCSSCCSBCCCCGGGG-GCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEE
T ss_pred CEEECCCCcCCcc-Ccc--ccccCCEEECCCCCccccCchHhhc-ccCcccEEecCCCccccC---chhhhhhceeeEEE
Confidence 9999999999854 444 89999999999999984 3345666 899999999999999853 34555555 9999
Q ss_pred Cccccc--cccccccccCCC--------------------------CCcEEEcCCCCCCCCCCCCchhhcccCCCccccc
Q 041374 235 LSLNHF--SGQVKIDFNRLP--------------------------NLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEA 286 (513)
Q Consensus 235 L~~n~~--~~~~~~~~~~l~--------------------------~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~ 286 (513)
+++|.+ .+..+..+..+. +|+.+++++|....... ...+..+...+.++.
T Consensus 176 L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l--~~~~~~l~~l~~L~~ 253 (562)
T 3a79_B 176 LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRL--MTFLSELTRGPTLLN 253 (562)
T ss_dssp EEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHH--HHHHHHHHSCSSCEE
T ss_pred eecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchH--HHHHHHHhccCcceE
Confidence 999998 666666665543 34444444432100000 001112223333333
Q ss_pred ccccccccCCcCchhhhc--cccccceEEeccccceecCCccc-----cCC--------------------------CCC
Q 041374 287 FGLDTNIFGGVLPLSIAN--LSSTIILFTMGLNQIYGTIPPEV-----KNL--------------------------VNL 333 (513)
Q Consensus 287 L~l~~n~~~~~~~~~~~~--~~~~l~~l~l~~~~~~~~~~~~~-----~~~--------------------------~~L 333 (513)
+++.++.+.+.....+.. ....++.+++++|.+.+.+|..+ ..+ .+|
T Consensus 254 L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L 333 (562)
T 3a79_B 254 VTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNI 333 (562)
T ss_dssp EEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCC
T ss_pred EEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcc
Confidence 333333332211111000 00136666666666666665544 221 357
Q ss_pred CEEeccCCcCccCCC-ccccCCCCeEEecc-----CCccccCCCCCCEEecccCcCcc--cChHHHHhhhcccceEEccC
Q 041374 334 NGFGLEYNQLTGPIP-HAIGELRNLQLRGN-----VPSSLGNCQNLMLLSVSNNKLTG--ALPPQILGILTLSILLDLSG 405 (513)
Q Consensus 334 ~~L~l~~n~~~~~~~-~~~~~l~~L~l~~~-----~~~~l~~~~~L~~L~ls~n~l~~--~~p~~~~~~~~~l~~L~l~~ 405 (513)
++|++++|.+..... ..+.+++.|+++++ .|..+..+++|++|++++|++.+ .+|..+ ...+.|++|++++
T Consensus 334 ~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-~~l~~L~~L~l~~ 412 (562)
T 3a79_B 334 KMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT-KNMSSLETLDVSL 412 (562)
T ss_dssp SEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTT-TTCTTCCEEECTT
T ss_pred eEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhh-cCCCCCCEEECCC
Confidence 777777777664332 55677788887664 56777888999999999999874 223333 3445569999999
Q ss_pred CcCcccCCc-cccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCccc
Q 041374 406 NLLTGSIPT-EVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHI 484 (513)
Q Consensus 406 n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 484 (513)
|++++.+|. .+..+++|++|++++|.+++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+
T Consensus 413 N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l 488 (562)
T 3a79_B 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SV 488 (562)
T ss_dssp SCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CC
T ss_pred CcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CC
Confidence 999874554 477889999999999999877776654 78999999999998 78877778999999999999998 46
Q ss_pred chh-hhcccCc-eEEccCCcccccCC
Q 041374 485 PEF-LENLSFN-KMNETINDFCHHKP 508 (513)
Q Consensus 485 p~~-l~~l~~l-~l~l~~n~l~~~~p 508 (513)
|.. +..++.| .+++++|++++..|
T Consensus 489 ~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 489 PDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 655 8899999 99999999987654
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3e-38 Score=323.98 Aligned_cols=387 Identities=20% Similarity=0.226 Sum_probs=290.1
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 155 (513)
.+++.|++++|.+.+..+..+.++++|++|++++|.+++. .|..|+++++|++|++++|.++. +|.. .++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-------~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~ 90 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL-------DISVFKFNQELEYLDLSHNKLVK-ISCH--PTV 90 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEE-------EGGGGTTCTTCCEEECCSSCCCE-EECC--CCC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCc-------ChHHhhcccCCCEEecCCCceee-cCcc--ccC
Confidence 6899999999999998888999999999999999999833 25688999999999999999986 6665 899
Q ss_pred CCCEEEcccccCCc-cCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCC--CEEEccCCcc--cccCcccccC----
Q 041374 156 SLSFLDISENAFSG-MFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNL--EDLSVRQNNY--TGSLPHSLSN---- 226 (513)
Q Consensus 156 ~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L--~~L~l~~n~l--~~~~~~~l~~---- 226 (513)
+|++|++++|.+++ ..|..+.++++|++|++++|.+.+ ..+. .+++| ++|++++|.+ .+..|..+..
T Consensus 91 ~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~-~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~ 166 (520)
T 2z7x_B 91 NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVL-PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTE 166 (520)
T ss_dssp CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGG-GGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEE
T ss_pred CccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhcc-ccccceeeEEEeecccccccccccccccccccc
Confidence 99999999999987 478999999999999999999985 2233 56777 9999999998 6666665554
Q ss_pred ----------------------CCCCCeeeCcccc-------ccccccccccCCCCCcEEEcCCCCCCCCCCCCc-----
Q 041374 227 ----------------------ASNLQLLDLSLNH-------FSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDL----- 272 (513)
Q Consensus 227 ----------------------l~~L~~L~L~~n~-------~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~----- 272 (513)
+++|+.+++++|. +.+..+ .+..+++|+.|++++|.+.+.....+
T Consensus 167 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~ 245 (520)
T 2z7x_B 167 SLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVW 245 (520)
T ss_dssp EEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHH
T ss_pred eEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhh
Confidence 5566777776665 333333 45555555555554443332100000
Q ss_pred ----------------hhhccc-----CCCcccccccccccccCCcCc-hhhhccc--cccceEEeccccceecCCcccc
Q 041374 273 ----------------DFIAHL-----TNCSKLEAFGLDTNIFGGVLP-LSIANLS--STIILFTMGLNQIYGTIPPEVK 328 (513)
Q Consensus 273 ----------------~~~~~l-----~~~~~L~~L~l~~n~~~~~~~-~~~~~~~--~~l~~l~l~~~~~~~~~~~~~~ 328 (513)
..+..+ ..++.|+.+++++|.+ .+| .++..+. ..++.++++.|.+.... ...
T Consensus 246 ~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~ 321 (520)
T 2z7x_B 246 HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPS 321 (520)
T ss_dssp TSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCS
T ss_pred hCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chh
Confidence 011112 4444555555555544 222 3333321 12666666666654322 125
Q ss_pred CCCCCCEEeccCCcCccCCCccc---cCCCCeEEecc-------CCccccCCCCCCEEecccCcCcccChHHHHhhhccc
Q 041374 329 NLVNLNGFGLEYNQLTGPIPHAI---GELRNLQLRGN-------VPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLS 398 (513)
Q Consensus 329 ~~~~L~~L~l~~n~~~~~~~~~~---~~l~~L~l~~~-------~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l 398 (513)
.+++|++|++++|.+++..|..+ .+++.|+++++ +|..+..+++|++|++++|.+.+.+|...+...+.|
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 78899999999999998777655 45666677664 234577899999999999999977887766666777
Q ss_pred ceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCccccccccc-ccCCCCCCEEECCC
Q 041374 399 ILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLA-LNTLKSIKELDLSR 477 (513)
Q Consensus 399 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~ 477 (513)
++|++++|++++..|..+. ++|++|++++|.+. .+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHT 477 (520)
T ss_dssp CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcC
Confidence 9999999999887776664 79999999999999 88988889999999999999999 56665 89999999999999
Q ss_pred CCCCcccc
Q 041374 478 NNLSGHIP 485 (513)
Q Consensus 478 n~l~~~~p 485 (513)
|++.+..+
T Consensus 478 N~~~c~c~ 485 (520)
T 2z7x_B 478 NPWDCSCP 485 (520)
T ss_dssp SCBCCCHH
T ss_pred CCCcccCC
Confidence 99987654
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.7e-38 Score=315.40 Aligned_cols=376 Identities=24% Similarity=0.271 Sum_probs=266.1
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCC-------------CCEEEeecCc
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSA-------------LQNIDIAGNR 142 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~-------------L~~L~l~~n~ 142 (513)
.+++.++++++.+ +.+|..++++++|++|++++|.+.|.+| ..++++++ +++|++++|.
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p-------~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~ 82 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAP-------PGNGEQREMAVSRLRDCLDRQAHELELNNLG 82 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSC-------TTSCCCHHHHHHHHHHHHHHTCSEEECTTSC
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCC-------cccccchhcchhhhhhhhccCCCEEEecCCc
Confidence 5789999999999 7899999999999999999999986655 45555554 5999999999
Q ss_pred ccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcc
Q 041374 143 LHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPH 222 (513)
Q Consensus 143 l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~ 222 (513)
+++ +|.. .++|++|++++|.+++ +|.. .++|++|++++|.+. .+|.. .++|++|++++|++++ +|
T Consensus 83 l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-lp- 147 (454)
T 1jl5_A 83 LSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-LP- 147 (454)
T ss_dssp CSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-CC-
T ss_pred ccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-Cc-
Confidence 987 4542 3789999999999987 4543 479999999999998 45532 2689999999999995 77
Q ss_pred cccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhh
Q 041374 223 SLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSI 302 (513)
Q Consensus 223 ~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~ 302 (513)
.++++++|++|++++|++.+ +|.. .++|++|++++|.+.+. ..+..+++|+.|++++|.+.+. |..
T Consensus 148 ~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l--------~~~~~l~~L~~L~l~~N~l~~l-~~~- 213 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEEL--------PELQNLPFLTAIYADNNSLKKL-PDL- 213 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSC--------CCCTTCTTCCEEECCSSCCSSC-CCC-
T ss_pred ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCcC--------ccccCCCCCCEEECCCCcCCcC-CCC-
Confidence 59999999999999999985 4443 35899999999998762 2478889999999999998863 322
Q ss_pred hccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCcccc-CCCCCCEEecccC
Q 041374 303 ANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLG-NCQNLMLLSVSNN 381 (513)
Q Consensus 303 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~-~~~~L~~L~ls~n 381 (513)
...++.+++++|.+. .+|. +..+++|++|++++|++++ +|..+.+++.|+++++-...+. ..++|++|++++|
T Consensus 214 ---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N 287 (454)
T 1jl5_A 214 ---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSEN 287 (454)
T ss_dssp ---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS
T ss_pred ---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-ccccccccCEEECCCCcccccCcccCcCCEEECcCC
Confidence 235999999999988 6674 8899999999999999985 6667788999998876333332 2478999999999
Q ss_pred cCcccChHHHHhhhcccceEEccCCcCcccCCccccCC-CCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccc
Q 041374 382 KLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNL-KNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSI 460 (513)
Q Consensus 382 ~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 460 (513)
++++ +|. .+..+++|++++|++++ ++ .+ ++|++|++++|.+.+ +|.. +++|++|++++|+++ .+
T Consensus 288 ~l~~-l~~----~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~l 352 (454)
T 1jl5_A 288 IFSG-LSE----LPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EV 352 (454)
T ss_dssp CCSE-ESC----CCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CC
T ss_pred ccCc-ccC----cCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cc
Confidence 9985 221 12456999999999985 22 23 589999999999985 6654 589999999999998 56
Q ss_pred cccccCCCCCCEEECCCCCCCc--ccchhhhcc-------------cCc-eEEccCCcccc--cCCCCCc
Q 041374 461 PLALNTLKSIKELDLSRNNLSG--HIPEFLENL-------------SFN-KMNETINDFCH--HKPKVFA 512 (513)
Q Consensus 461 ~~~~~~l~~L~~L~l~~n~l~~--~~p~~l~~l-------------~~l-~l~l~~n~l~~--~~p~~~~ 512 (513)
|. .+++|++|++++|++++ .+|..+..+ +.| ++|+++|+++| .+|..+.
T Consensus 353 p~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~ 419 (454)
T 1jl5_A 353 PE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVE 419 (454)
T ss_dssp CC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------------------
T ss_pred cc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHh
Confidence 76 47899999999999998 788998888 778 99999999998 8998764
No 26
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.2e-37 Score=310.06 Aligned_cols=345 Identities=19% Similarity=0.204 Sum_probs=223.1
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 155 (513)
.+++.|+++++.+.+. + .+..+++|++|++++|.++ .+| ++.+++|++|++++|.+++. + ++.++
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~--------~~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~ 106 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNIT--------TLD--LSQNTNLTYLACDSNKLTNL-D--VTPLT 106 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCS--------CCC--CTTCTTCSEEECCSSCCSCC-C--CTTCT
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCC--------eEc--cccCCCCCEEECcCCCCcee-e--cCCCC
Confidence 5678888888887764 3 5778888888888888877 333 67778888888888888773 3 77788
Q ss_pred CCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeC
Q 041374 156 SLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDL 235 (513)
Q Consensus 156 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 235 (513)
+|++|++++|.+++. + +..+++|++|++++|.+++ ++ +. .+++|++|++++|+..+.+ .+..+++|++|++
T Consensus 107 ~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~--l~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 177 (457)
T 3bz5_A 107 KLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID--VS-HNTQLTELDCHLNKKITKL--DVTPQTQLTTLDC 177 (457)
T ss_dssp TCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC--CT-TCTTCCEEECTTCSCCCCC--CCTTCTTCCEEEC
T ss_pred cCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec--cc-cCCcCCEEECCCCCccccc--ccccCCcCCEEEC
Confidence 888888888887764 2 7777888888888888774 43 33 6778888888888554444 3667778888888
Q ss_pred ccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEec
Q 041374 236 SLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMG 315 (513)
Q Consensus 236 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~ 315 (513)
++|++++ ++ +..+++|+.|++++|.+++. .+..+++|+.|++++|.+.+ +| ++.++. ++.++++
T Consensus 178 s~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---------~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~-L~~L~l~ 241 (457)
T 3bz5_A 178 SFNKITE-LD--VSQNKLLNRLNCDTNNITKL---------DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQ-LTYFDCS 241 (457)
T ss_dssp CSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---------CCTTCTTCSEEECCSSCCSC-CC--CTTCTT-CSEEECC
T ss_pred CCCccce-ec--cccCCCCCEEECcCCcCCee---------ccccCCCCCEEECcCCcccc-cC--ccccCC-CCEEEee
Confidence 8887775 33 67777888888888777652 25566677777777776665 22 333333 5555555
Q ss_pred cccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhh
Q 041374 316 LNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGIL 395 (513)
Q Consensus 316 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~ 395 (513)
.|++.+.. ...+++|+.+++++| +|+.|++++|.+.+.+|. ...
T Consensus 242 ~N~l~~~~---~~~l~~L~~L~l~~n------------------------------~L~~L~l~~n~~~~~~~~---~~l 285 (457)
T 3bz5_A 242 VNPLTELD---VSTLSKLTTLHCIQT------------------------------DLLEIDLTHNTQLIYFQA---EGC 285 (457)
T ss_dssp SSCCSCCC---CTTCTTCCEEECTTC------------------------------CCSCCCCTTCTTCCEEEC---TTC
T ss_pred CCcCCCcC---HHHCCCCCEEeccCC------------------------------CCCEEECCCCccCCcccc---ccc
Confidence 55554432 223334444444433 333444444443333331 112
Q ss_pred cccceEEccCCcCcccCCc--------cccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCC
Q 041374 396 TLSILLDLSGNLLTGSIPT--------EVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTL 467 (513)
Q Consensus 396 ~~l~~L~l~~n~l~~~~~~--------~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 467 (513)
+.|+.|++++|...+.+|. .+..+++|++|++++|.+++ ++ ++.+++|+.|++++|++++ +
T Consensus 286 ~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~--------l 354 (457)
T 3bz5_A 286 RKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD--------F 354 (457)
T ss_dssp TTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB--------C
T ss_pred ccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC--------c
Confidence 2234444444433322221 13445778888888888876 33 7778888888888888874 2
Q ss_pred CCCCEEECCCCCCCcccchhhhcccCc-eEEccCCcccccCCCCCc
Q 041374 468 KSIKELDLSRNNLSGHIPEFLENLSFN-KMNETINDFCHHKPKVFA 512 (513)
Q Consensus 468 ~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n~l~~~~p~~~~ 512 (513)
+.|..|++++|.+.|. ..+..+ .+++++|+++|.||..+.
T Consensus 355 ~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 355 SSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp TTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred cccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHh
Confidence 4555667777777765 345566 889999999999998653
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.7e-36 Score=304.55 Aligned_cols=344 Identities=26% Similarity=0.341 Sum_probs=240.0
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 155 (513)
.+++.|+++++.+.. ++ .+..+++|++|++++|.++ .++. +.++++|++|++++|.+.+..+ +..++
T Consensus 46 ~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~--------~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~ 112 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLT--------DITP-LKNLTKLVDILMNNNQIADITP--LANLT 112 (466)
T ss_dssp HTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC--------CCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCT
T ss_pred ccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccC--------Cchh-hhccccCCEEECCCCccccChh--hcCCC
Confidence 468888888887765 33 4778888899999888877 4444 7888888899988888887544 88888
Q ss_pred CCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeC
Q 041374 156 SLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDL 235 (513)
Q Consensus 156 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 235 (513)
+|++|++++|.+++..+ +.++++|++|++++|.+. .++. +. .+++|++|+++ +.+.+. + .+.++++|++|++
T Consensus 113 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~-~l~~L~~L~l~-~~~~~~-~-~~~~l~~L~~L~l 184 (466)
T 1o6v_A 113 NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISA-LS-GLTSLQQLSFG-NQVTDL-K-PLANLTTLERLDI 184 (466)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEEC-CCGG-GT-TCTTCSEEEEE-ESCCCC-G-GGTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccC-CChh-hc-cCCcccEeecC-CcccCc-h-hhccCCCCCEEEC
Confidence 88899988888876643 788888888888888887 3443 33 68888888886 444422 2 3778888888888
Q ss_pred ccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEec
Q 041374 236 SLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMG 315 (513)
Q Consensus 236 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~ 315 (513)
++|.+.+. ..+..+++|++|++++|.+.+.. .+..+++|+.|++++|.+.+. ..+..++. ++.++++
T Consensus 185 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--------~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~-L~~L~l~ 251 (466)
T 1o6v_A 185 SSNKVSDI--SVLAKLTNLESLIATNNQISDIT--------PLGILTNLDELSLNGNQLKDI--GTLASLTN-LTDLDLA 251 (466)
T ss_dssp CSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--------GGGGCTTCCEEECCSSCCCCC--GGGGGCTT-CSEEECC
T ss_pred cCCcCCCC--hhhccCCCCCEEEecCCcccccc--------cccccCCCCEEECCCCCcccc--hhhhcCCC-CCEEECC
Confidence 88887643 34778888888888888776532 255677788888888877653 23445544 7777777
Q ss_pred cccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhh
Q 041374 316 LNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGIL 395 (513)
Q Consensus 316 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~ 395 (513)
+|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|++.+. +. +...
T Consensus 252 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~------------------~~~l~~L~~L~L~~n~l~~~-~~--~~~l 308 (466)
T 1o6v_A 252 NNQISNLAP--LSGLTKLTELKLGANQISNISP------------------LAGLTALTNLELNENQLEDI-SP--ISNL 308 (466)
T ss_dssp SSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG------------------GTTCTTCSEEECCSSCCSCC-GG--GGGC
T ss_pred CCccccchh--hhcCCCCCEEECCCCccCcccc------------------ccCCCccCeEEcCCCcccCc-hh--hcCC
Confidence 777665443 5666777777777776663211 34456777777777777643 32 2334
Q ss_pred cccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEEC
Q 041374 396 TLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDL 475 (513)
Q Consensus 396 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 475 (513)
+.|+.|++++|++++..| +..+++|++|++++|.+.+. ..+..+++|++|++++|++.+..| +..+++|+.|++
T Consensus 309 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 382 (466)
T 1o6v_A 309 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 382 (466)
T ss_dssp TTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEEC
T ss_pred CCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEec
Confidence 445777777777765444 55677777777777777643 456677777777777777776655 666777777777
Q ss_pred CCCCCCc
Q 041374 476 SRNNLSG 482 (513)
Q Consensus 476 ~~n~l~~ 482 (513)
++|++++
T Consensus 383 ~~n~~~~ 389 (466)
T 1o6v_A 383 NDQAWTN 389 (466)
T ss_dssp CCEEEEC
T ss_pred cCCcccC
Confidence 7777764
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.4e-36 Score=306.40 Aligned_cols=346 Identities=16% Similarity=0.136 Sum_probs=273.2
Q ss_pred CCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccC-cccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEE
Q 041374 131 SALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMF-HSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDL 209 (513)
Q Consensus 131 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L 209 (513)
++|++|++++|.+++..|..|.++++|++|++++|.+.+.+ +..|.++++|++|++++|.+.+..|..+. .+++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFN-GLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTT-TCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhcc-CcccCCEE
Confidence 68999999999999988999999999999999999987444 67788999999999999999866666666 88999999
Q ss_pred EccCCcccccCccc--ccCCCCCCeeeCcccccccccccc-ccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCccccc
Q 041374 210 SVRQNNYTGSLPHS--LSNASNLQLLDLSLNHFSGQVKID-FNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEA 286 (513)
Q Consensus 210 ~l~~n~l~~~~~~~--l~~l~~L~~L~L~~n~~~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~ 286 (513)
++++|.+++..+.. +..+++|++|++++|.+.+..|.. +..+++|++|++++|.+.+.....+.. + ...+++.
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~---l-~~~~L~~ 184 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN---F-QGKHFTL 184 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGG---G-TTCEEEE
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhc---c-ccccccc
Confidence 99999998755554 888999999999999998776765 788999999999999887754432211 1 1146677
Q ss_pred ccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCcc
Q 041374 287 FGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSS 366 (513)
Q Consensus 287 L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~ 366 (513)
+++++|.+.+..+.+++.. ....+..+++|++|++++|.+.+..+..+...
T Consensus 185 L~l~~n~l~~~~~~~~~~~-----------------~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~------------ 235 (455)
T 3v47_A 185 LRLSSITLQDMNEYWLGWE-----------------KCGNPFKNTSITTLDLSGNGFKESMAKRFFDA------------ 235 (455)
T ss_dssp EECTTCBCTTCSTTCTTHH-----------------HHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH------------
T ss_pred cccccCcccccchhhcccc-----------------ccccccccceeeeEecCCCcccccchhhhhcc------------
Confidence 7777776665443332110 01123456789999999999987666544221
Q ss_pred ccCCCCCCEEecccCcCcccC----------hHHHHh-hhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCcc
Q 041374 367 LGNCQNLMLLSVSNNKLTGAL----------PPQILG-ILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIE 435 (513)
Q Consensus 367 l~~~~~L~~L~ls~n~l~~~~----------p~~~~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 435 (513)
...++|+.|++++|...+.. +..+.. ....+++|++++|++++..|..+..+++|++|++++|.+.+.
T Consensus 236 -~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 314 (455)
T 3v47_A 236 -IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314 (455)
T ss_dssp -TTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred -ccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence 11256777777777543221 111111 124569999999999988999999999999999999999988
Q ss_pred CCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEccCCcccccCCCCC
Q 041374 436 IPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETINDFCHHKPKVF 511 (513)
Q Consensus 436 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n~l~~~~p~~~ 511 (513)
.|..|..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..++.| ++++++|++++..|..+
T Consensus 315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 391 (455)
T 3v47_A 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF 391 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred ChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHh
Confidence 89999999999999999999998889999999999999999999998889999999999 99999999997555443
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=9.8e-37 Score=315.33 Aligned_cols=388 Identities=21% Similarity=0.226 Sum_probs=282.3
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 155 (513)
.+++.|++++|.+.+..+..+.++++|++|++++|.+++. .|+.|.++++|++|++++|.++. +|.. .++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-------~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~ 121 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL-------DFHVFLFNQDLEYLDVSHNRLQN-ISCC--PMA 121 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEE-------CTTTTTTCTTCCEEECTTSCCCE-ECSC--CCT
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcC-------CHHHhCCCCCCCEEECCCCcCCc-cCcc--ccc
Confidence 6899999999999998888999999999999999999843 25578999999999999999986 6655 899
Q ss_pred CCCEEEcccccCCcc-CcccccCCCCCcEEeCCCCcCcccCCccccCCCCCC--CEEEccCCcc--cccCcccccC----
Q 041374 156 SLSFLDISENAFSGM-FHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNL--EDLSVRQNNY--TGSLPHSLSN---- 226 (513)
Q Consensus 156 ~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L--~~L~l~~n~l--~~~~~~~l~~---- 226 (513)
+|++|++++|.+++. .|..+.++++|++|++++|.+.+. .+. .+++| ++|++++|.+ ++..|..+..
T Consensus 122 ~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~-~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~ 197 (562)
T 3a79_B 122 SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLL-PVAHLHLSCILLDLVSYHIKGGETESLQIPNTT 197 (562)
T ss_dssp TCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTG-GGTTSCEEEEEEEESSCCCCSSSCCEEEECCEE
T ss_pred cCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chh-hhhhceeeEEEeecccccccccCcccccccCcc
Confidence 999999999999875 468999999999999999999842 222 44555 9999999998 6666665554
Q ss_pred ----------------------CCCCCeeeCcccccc----ccccccccCCC---------------------------C
Q 041374 227 ----------------------ASNLQLLDLSLNHFS----GQVKIDFNRLP---------------------------N 253 (513)
Q Consensus 227 ----------------------l~~L~~L~L~~n~~~----~~~~~~~~~l~---------------------------~ 253 (513)
+++|+.+++++|... ......+..++ +
T Consensus 198 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~ 277 (562)
T 3a79_B 198 VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRP 277 (562)
T ss_dssp EEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSS
T ss_pred eEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhccc
Confidence 345666666665310 00111233333 4
Q ss_pred CcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCc-hhhhcc--ccccceEEeccccceecCCccccCC
Q 041374 254 LFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLP-LSIANL--SSTIILFTMGLNQIYGTIPPEVKNL 330 (513)
Q Consensus 254 L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~-~~~~~~--~~~l~~l~l~~~~~~~~~~~~~~~~ 330 (513)
|++|++++|.+.+..+..+. ......++.|+.+++..+.+ .+| .++... ...++.++++.|.+..... ...+
T Consensus 278 L~~L~l~~n~l~~~ip~~~~-~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l 352 (562)
T 3a79_B 278 VEYLNIYNLTITERIDREEF-TYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPSP 352 (562)
T ss_dssp EEEEEEEEEEECSCCCCCCC-CCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSC
T ss_pred ccEEEEeccEeeccccchhh-hcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcccccC--ccCC
Confidence 55555555555432221110 00013334444444444443 222 222222 1227778888777643221 1567
Q ss_pred CCCCEEeccCCcCccCCCccc---cCCCCeEEeccC-------CccccCCCCCCEEecccCcCcccChHHHHhhhcccce
Q 041374 331 VNLNGFGLEYNQLTGPIPHAI---GELRNLQLRGNV-------PSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSIL 400 (513)
Q Consensus 331 ~~L~~L~l~~n~~~~~~~~~~---~~l~~L~l~~~~-------~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~ 400 (513)
++|++|++++|.+++..|..+ .+++.|+++++- |..+..+++|++|++++|++.+.+|...+.....|++
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~ 432 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV 432 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCE
T ss_pred CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCE
Confidence 788888888888887666554 445566666542 2346788999999999999997788876666777899
Q ss_pred EEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCccccccccc-ccCCCCCCEEECCCCC
Q 041374 401 LDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLA-LNTLKSIKELDLSRNN 479 (513)
Q Consensus 401 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~ 479 (513)
|++++|++++..|..+. ++|++|++++|.+. .+|..+..+++|++|++++|+++ .+|.. +..+++|+.|++++|+
T Consensus 433 L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 433 LNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp EECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCC
T ss_pred EECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCC
Confidence 99999999877766554 79999999999998 78888889999999999999999 56665 8999999999999999
Q ss_pred CCcccch
Q 041374 480 LSGHIPE 486 (513)
Q Consensus 480 l~~~~p~ 486 (513)
+.+..|.
T Consensus 509 ~~c~c~~ 515 (562)
T 3a79_B 509 WDCTCPG 515 (562)
T ss_dssp BCCCHHH
T ss_pred cCCCcch
Confidence 9876553
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.4e-35 Score=299.40 Aligned_cols=345 Identities=24% Similarity=0.354 Sum_probs=237.8
Q ss_pred CCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccC
Q 041374 98 NLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFN 177 (513)
Q Consensus 98 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~ 177 (513)
.+++++.|++.++.+. .+| .+..+++|++|++++|.+.+..+ +.++++|++|++++|.+++..+ +.+
T Consensus 44 ~l~~l~~L~l~~~~i~--------~l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~ 110 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK--------SID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LAN 110 (466)
T ss_dssp HHHTCCEEECCSSCCC--------CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTT
T ss_pred HhccccEEecCCCCCc--------cCc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcC
Confidence 4567777888777765 344 36667788888888877776433 7777888888888887776654 777
Q ss_pred CCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEE
Q 041374 178 ISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRL 257 (513)
Q Consensus 178 l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 257 (513)
+++|++|++++|.+. .++. +. .+++|++|++++|.+.+ ++ .+..+++|++|++. |.+.+. ..+..+++|++|
T Consensus 111 l~~L~~L~L~~n~l~-~~~~-~~-~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L 182 (466)
T 1o6v_A 111 LTNLTGLTLFNNQIT-DIDP-LK-NLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERL 182 (466)
T ss_dssp CTTCCEEECCSSCCC-CCGG-GT-TCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEE
T ss_pred CCCCCEEECCCCCCC-CChH-Hc-CCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCc--hhhccCCCCCEE
Confidence 788888888887777 3443 33 67778888888877773 33 37777778888775 334322 237777788888
Q ss_pred EcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEe
Q 041374 258 NFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFG 337 (513)
Q Consensus 258 ~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 337 (513)
++++|.+... ..+..+++|+.|++++|.+.+..+ ++.++. ++.++++.|.+.+. ..+..+++|++|+
T Consensus 183 ~l~~n~l~~~--------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~-L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 249 (466)
T 1o6v_A 183 DISSNKVSDI--------SVLAKLTNLESLIATNNQISDITP--LGILTN-LDELSLNGNQLKDI--GTLASLTNLTDLD 249 (466)
T ss_dssp ECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCCCGG--GGGCTT-CCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred ECcCCcCCCC--------hhhccCCCCCEEEecCCccccccc--ccccCC-CCEEECCCCCcccc--hhhhcCCCCCEEE
Confidence 8877776542 235667777888888777776655 444444 77788877777653 3466777788888
Q ss_pred ccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCcccc
Q 041374 338 LEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVG 417 (513)
Q Consensus 338 l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~ 417 (513)
+++|.+.+..+ +..+++|++|++++|.+.+ ++. +...+.|++|++++|++++..+ +.
T Consensus 250 l~~n~l~~~~~------------------~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~L~~n~l~~~~~--~~ 306 (466)
T 1o6v_A 250 LANNQISNLAP------------------LSGLTKLTELKLGANQISN-ISP--LAGLTALTNLELNENQLEDISP--IS 306 (466)
T ss_dssp CCSSCCCCCGG------------------GTTCTTCSEEECCSSCCCC-CGG--GTTCTTCSEEECCSSCCSCCGG--GG
T ss_pred CCCCccccchh------------------hhcCCCCCEEECCCCccCc-ccc--ccCCCccCeEEcCCCcccCchh--hc
Confidence 88877764321 3445777788888887764 333 3334455778888887775433 66
Q ss_pred CCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCc-eE
Q 041374 418 NLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KM 496 (513)
Q Consensus 418 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l 496 (513)
.+++|+.|++++|.+.+..| +..+++|++|++++|++++. ..+..+++|+.|++++|++++..| +..++.| .+
T Consensus 307 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 380 (466)
T 1o6v_A 307 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQL 380 (466)
T ss_dssp GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEE
T ss_pred CCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEE
Confidence 77778888888887775544 56777888888888877754 356777788888888888776666 6777777 78
Q ss_pred EccCCcccc
Q 041374 497 NETINDFCH 505 (513)
Q Consensus 497 ~l~~n~l~~ 505 (513)
++++|++++
T Consensus 381 ~l~~n~~~~ 389 (466)
T 1o6v_A 381 GLNDQAWTN 389 (466)
T ss_dssp ECCCEEEEC
T ss_pred eccCCcccC
Confidence 888887776
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=9e-36 Score=293.97 Aligned_cols=350 Identities=22% Similarity=0.244 Sum_probs=252.9
Q ss_pred CCCCCCCCCCC-cccceeeCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcc-cCCCC
Q 041374 54 TKSWNNSISLC-QWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPS-IGNLS 131 (513)
Q Consensus 54 ~~~w~~~~~~c-~~~~v~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~-~~~l~ 131 (513)
+++|..+.+|| .|.+..|.. +.+.+............-..++++++|+++++.++ .+|.. +.+++
T Consensus 3 ~~~~~~~~~C~~~~~~~~c~~-----~~~~i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~--------~l~~~~~~~l~ 69 (390)
T 3o6n_A 3 VKPRQPEYKCIDSNLQYDCVF-----YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR--------KLPAALLDSFR 69 (390)
T ss_dssp ----CCEECBCC------EEE-----ESCEECSSCCCCEESCSSGGGCCCSEEEEESCEES--------EECTHHHHHCC
T ss_pred cCCCCCccceehhhhhhccce-----eeeeeecccccccccccccccCCceEEEecCCchh--------hCChhHhcccc
Confidence 45676665555 455555531 11122222211112222345788999999999877 45554 67889
Q ss_pred CCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEc
Q 041374 132 ALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSV 211 (513)
Q Consensus 132 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l 211 (513)
+|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+.++++|++|++++|.+. .+|..++..+++|++|++
T Consensus 70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L 148 (390)
T 3o6n_A 70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSM 148 (390)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEEC
Confidence 9999999999998877778999999999999999999888888899999999999999988 778776557889999999
Q ss_pred cCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccc
Q 041374 212 RQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDT 291 (513)
Q Consensus 212 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 291 (513)
++|.+++..+..+..+++|++|++++|.+.+. .+..+++|+.|++++|.+.. +...++|+.|++++
T Consensus 149 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----------~~~~~~L~~L~l~~ 214 (390)
T 3o6n_A 149 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----------LAIPIAVEELDASH 214 (390)
T ss_dssp CSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----------EECCSSCSEEECCS
T ss_pred CCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----------cCCCCcceEEECCC
Confidence 99998877777788889999999999888753 35667888888888877654 12223455555555
Q ss_pred cccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCC
Q 041374 292 NIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQ 371 (513)
Q Consensus 292 n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~ 371 (513)
|.+. .. |. ...++|++|++++|.+++. .++..++
T Consensus 215 n~l~-------------------------~~-~~--~~~~~L~~L~l~~n~l~~~------------------~~l~~l~ 248 (390)
T 3o6n_A 215 NSIN-------------------------VV-RG--PVNVELTILKLQHNNLTDT------------------AWLLNYP 248 (390)
T ss_dssp SCCC-------------------------EE-EC--CCCSSCCEEECCSSCCCCC------------------GGGGGCT
T ss_pred Ceee-------------------------ec-cc--cccccccEEECCCCCCccc------------------HHHcCCC
Confidence 5443 22 11 1236788999999988742 2345678
Q ss_pred CCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeC
Q 041374 372 NLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYM 451 (513)
Q Consensus 372 ~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 451 (513)
+|++|++++|.+.+..|..+.. .+.|++|++++|++++ ++..+..+++|++|++++|++. .+|..+..+++|++|++
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L 325 (390)
T 3o6n_A 249 GLVEVDLSYNELEKIMYHPFVK-MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 325 (390)
T ss_dssp TCSEEECCSSCCCEEESGGGTT-CSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEEC
T ss_pred CccEEECCCCcCCCcChhHccc-cccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEEC
Confidence 8999999999988665655544 4455999999999884 5666677889999999999888 67777888899999999
Q ss_pred CCCcccccccccccCCCCCCEEECCCCCCCcc
Q 041374 452 EGNSVTGSIPLALNTLKSIKELDLSRNNLSGH 483 (513)
Q Consensus 452 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 483 (513)
++|++++. + +..+++|+.|++++|++.+.
T Consensus 326 ~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 326 DHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred CCCcccee-C--chhhccCCEEEcCCCCccch
Confidence 99998743 3 67788999999999998754
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-35 Score=300.53 Aligned_cols=303 Identities=21% Similarity=0.234 Sum_probs=201.8
Q ss_pred CCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEc
Q 041374 132 ALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSV 211 (513)
Q Consensus 132 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l 211 (513)
++++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+. .+|...+..+++|++|++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEEEC
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEEEC
Confidence 4444444444444444444444455555555555444444444444444444444444444 444443335566666666
Q ss_pred cCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccc
Q 041374 212 RQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDT 291 (513)
Q Consensus 212 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 291 (513)
++|++++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.... ...+..+++|
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------~~~l~~l~~L------- 178 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP------TEALSHLHGL------- 178 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC------HHHHTTCTTC-------
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC------hhHhcccCCC-------
Confidence 666665555555666666666666666666555555666666666666655554321 1122333333
Q ss_pred cccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCC
Q 041374 292 NIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQ 371 (513)
Q Consensus 292 n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~ 371 (513)
+.++++.|.+.+..+..+..+++|++|++++|...+.++.. .....
T Consensus 179 ------------------~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----------------~~~~~ 224 (477)
T 2id5_A 179 ------------------IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN----------------CLYGL 224 (477)
T ss_dssp ------------------CEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTT----------------TTTTC
T ss_pred ------------------cEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcc----------------cccCc
Confidence 33334444444444556778889999999999877655432 22335
Q ss_pred CCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeC
Q 041374 372 NLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYM 451 (513)
Q Consensus 372 ~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 451 (513)
+|++|++++|.++ .+|...+.....|++|++++|.+++..+..+..+++|++|++++|.+.+..|..|..+++|++|+|
T Consensus 225 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 303 (477)
T 2id5_A 225 NLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNV 303 (477)
T ss_dssp CCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEEC
T ss_pred cccEEECcCCccc-ccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEEC
Confidence 8999999999998 677666666677799999999999877788899999999999999999888999999999999999
Q ss_pred CCCcccccccccccCCCCCCEEECCCCCCCcc
Q 041374 452 EGNSVTGSIPLALNTLKSIKELDLSRNNLSGH 483 (513)
Q Consensus 452 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 483 (513)
++|++++..+..|..+++|+.|++++|++...
T Consensus 304 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 304 SGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp CSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred CCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 99999977777888999999999999998754
No 33
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.7e-35 Score=294.73 Aligned_cols=372 Identities=24% Similarity=0.267 Sum_probs=214.6
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCC-------------CEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCc
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFL-------------RFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNR 142 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L-------------~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~ 142 (513)
.+++.|+++++.+.|.+|..++++++| ++|++++|+++ .+|.. .++|++|++++|.
T Consensus 34 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~--------~lp~~---~~~L~~L~l~~n~ 102 (454)
T 1jl5_A 34 KSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS--------SLPEL---PPHLESLVASCNS 102 (454)
T ss_dssp CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS--------CCCSC---CTTCSEEECCSSC
T ss_pred cchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc--------cCCCC---cCCCCEEEccCCc
Confidence 345666666666666667666666653 77777777666 22321 2467777777777
Q ss_pred ccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcc
Q 041374 143 LHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPH 222 (513)
Q Consensus 143 l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~ 222 (513)
+++ +|.. .++|++|++++|.+++... . .++|++|++++|.+. .+| .+. .+++|++|++++|++++ +|.
T Consensus 103 l~~-lp~~---~~~L~~L~l~~n~l~~l~~-~---~~~L~~L~L~~n~l~-~lp-~~~-~l~~L~~L~l~~N~l~~-lp~ 170 (454)
T 1jl5_A 103 LTE-LPEL---PQSLKSLLVDNNNLKALSD-L---PPLLEYLGVSNNQLE-KLP-ELQ-NSSFLKIIDVDNNSLKK-LPD 170 (454)
T ss_dssp CSS-CCCC---CTTCCEEECCSSCCSCCCS-C---CTTCCEEECCSSCCS-SCC-CCT-TCTTCCEEECCSSCCSC-CCC
T ss_pred CCc-cccc---cCCCcEEECCCCccCcccC-C---CCCCCEEECcCCCCC-CCc-ccC-CCCCCCEEECCCCcCcc-cCC
Confidence 666 4432 3567777777776664311 1 156777777777776 366 333 66677777777777663 444
Q ss_pred cccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhh
Q 041374 223 SLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSI 302 (513)
Q Consensus 223 ~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~ 302 (513)
.+ ++|++|++++|.+.+ +| .++.+++|++|++++|.+.+... ..++|+.|++++|.+. .+|. +
T Consensus 171 ~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~----------~~~~L~~L~l~~n~l~-~lp~-~ 233 (454)
T 1jl5_A 171 LP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPD----------LPLSLESIVAGNNILE-ELPE-L 233 (454)
T ss_dssp CC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCC----------CCTTCCEEECCSSCCS-SCCC-C
T ss_pred Cc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCC----------CcCcccEEECcCCcCC-cccc-c
Confidence 32 467777777777664 34 46667777777777776654221 1136677777777666 3442 5
Q ss_pred hccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccC-CCCCCEEecccC
Q 041374 303 ANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGN-CQNLMLLSVSNN 381 (513)
Q Consensus 303 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~~~L~~L~ls~n 381 (513)
+.++. ++.+++++|++.+ +|.. .++|++|++++|.+.+ +|..+.+++.|+++++-...+.. .++|+.|++++|
T Consensus 234 ~~l~~-L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N 307 (454)
T 1jl5_A 234 QNLPF-LTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSN 307 (454)
T ss_dssp TTCTT-CCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSS
T ss_pred CCCCC-CCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcccCcCCEEECcCCccCcccCcCCcCCEEECcCC
Confidence 55554 6777777776664 3332 3567777777777664 55555667777766653333322 368999999999
Q ss_pred cCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccc--c
Q 041374 382 KLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTG--S 459 (513)
Q Consensus 382 ~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~--~ 459 (513)
++.+ ++ ..+..+++|++++|++++ +|.. +++|++|++++|.+. .+|. .+++|++|++++|++++ .
T Consensus 308 ~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ 374 (454)
T 1jl5_A 308 EIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPD 374 (454)
T ss_dssp CCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCC
T ss_pred cCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCC
Confidence 8874 33 223456899999999885 5543 588999999999988 5666 47899999999999987 7
Q ss_pred ccccccCC-------------CCCCEEECCCCCCCc--ccchhhhcccCceEEccCCcccccCCCCC
Q 041374 460 IPLALNTL-------------KSIKELDLSRNNLSG--HIPEFLENLSFNKMNETINDFCHHKPKVF 511 (513)
Q Consensus 460 ~~~~~~~l-------------~~L~~L~l~~n~l~~--~~p~~l~~l~~l~l~l~~n~l~~~~p~~~ 511 (513)
+|..+..+ ++|+.|++++|++++ .+|..++ .+.+.+|.+.+.+|...
T Consensus 375 ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~-----~L~~~~~~~~~~~~~~~ 436 (454)
T 1jl5_A 375 IPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVE-----DLRMNSERVVDPYEFAH 436 (454)
T ss_dssp CCTTCCEEECCC-------------------------------------------------------
T ss_pred ChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHh-----heeCcCcccCCccccCH
Confidence 88888777 889999999999987 6776654 66778888888877543
No 34
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.3e-34 Score=302.60 Aligned_cols=394 Identities=19% Similarity=0.192 Sum_probs=289.5
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCC-cccCCCCCCCEEEeecCcccccCccccCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLP-PSIGNLSALQNIDIAGNRLHSRVPESLGQL 154 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l 154 (513)
.+++.|+|++|++.+..+..|.++++|++|+|++|+++ .+| ..|.++++|++|++++|.+++..+..|+++
T Consensus 76 ~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~--------~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L 147 (635)
T 4g8a_A 76 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ--------SLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 147 (635)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC--------EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTC
T ss_pred CCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC--------CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcC
Confidence 58999999999999988889999999999999999998 444 468999999999999999999777789999
Q ss_pred CCCCEEEcccccCCcc-CcccccCCCCCcEEeCCCCcCcccCCccccCCCCC----CCEEEccCCcccccCcccc-----
Q 041374 155 RSLSFLDISENAFSGM-FHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPN----LEDLSVRQNNYTGSLPHSL----- 224 (513)
Q Consensus 155 ~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~----L~~L~l~~n~l~~~~~~~l----- 224 (513)
++|++|++++|.++.. .|..+..+++|++|++++|++.+..+..+. .+.+ ...++++.|.+....+..+
T Consensus 148 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~-~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~ 226 (635)
T 4g8a_A 148 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR-VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 226 (635)
T ss_dssp TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH-HHHTCTTCCCEEECTTCCCCEECTTTTTTCEE
T ss_pred cccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc-chhhhhhhhhhhhcccCcccccCcccccchhh
Confidence 9999999999999764 578889999999999999999854443332 2221 2344555554432111111
Q ss_pred -------------------cC---------------------------------------------------------CC
Q 041374 225 -------------------SN---------------------------------------------------------AS 228 (513)
Q Consensus 225 -------------------~~---------------------------------------------------------l~ 228 (513)
.. ..
T Consensus 227 ~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 306 (635)
T 4g8a_A 227 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLT 306 (635)
T ss_dssp EEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGT
T ss_pred hhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhc
Confidence 11 11
Q ss_pred CCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchh-------------hcccCCCcccccccccccccC
Q 041374 229 NLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDF-------------IAHLTNCSKLEAFGLDTNIFG 295 (513)
Q Consensus 229 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-------------~~~l~~~~~L~~L~l~~n~~~ 295 (513)
+++.+++.++.+.. ...+.....++.|++.+|.+.......+.. +.....+++|+.++++.|.+.
T Consensus 307 ~l~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~ 384 (635)
T 4g8a_A 307 NVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS 384 (635)
T ss_dssp TCSEEEEESCEEEE--CGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCB
T ss_pred cccccccccccccc--ccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccc
Confidence 12222222222211 112334456777777776654433221111 112335678888888888775
Q ss_pred C--cCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCC-ccc---cCCCCeEEec-----cCC
Q 041374 296 G--VLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIP-HAI---GELRNLQLRG-----NVP 364 (513)
Q Consensus 296 ~--~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~---~~l~~L~l~~-----~~~ 364 (513)
. ..+........ ++.+++..+..... +..+..+++|+.+++..++.....+ ..+ ..++.++++. ..+
T Consensus 385 ~~~~~~~~~~~~~~-L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~ 462 (635)
T 4g8a_A 385 FKGCCSQSDFGTIS-LKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 462 (635)
T ss_dssp EEEECCHHHHSCSC-CCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCT
T ss_pred cccccccchhhhhh-hhhhhccccccccc-cccccccccccchhhhhccccccccccccccccccccccccccccccccc
Confidence 3 34455555555 88888888877654 4557789999999999988765444 233 3444455443 356
Q ss_pred ccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCC
Q 041374 365 SSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACT 444 (513)
Q Consensus 365 ~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 444 (513)
..+..++.++.|++++|.+.+.+++..+...+.|++|++++|++++..|..+.++++|++|++++|++.+..|..|..++
T Consensus 463 ~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~ 542 (635)
T 4g8a_A 463 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 542 (635)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCT
T ss_pred cccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCC
Confidence 66778899999999999865554444455556679999999999988899999999999999999999988888999999
Q ss_pred CCCEEeCCCCcccccccccccCC-CCCCEEECCCCCCCc
Q 041374 445 TLEYLYMEGNSVTGSIPLALNTL-KSIKELDLSRNNLSG 482 (513)
Q Consensus 445 ~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~ 482 (513)
+|++|+|++|++++..|..+..+ ++|+.|++++|++..
T Consensus 543 ~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 543 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 99999999999999999999988 689999999999864
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.7e-34 Score=300.15 Aligned_cols=312 Identities=24% Similarity=0.284 Sum_probs=243.8
Q ss_pred CCCCCCEEeCCCCCCcccCCCCCCCCCc-ccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCccccc
Q 041374 98 NLSFLRFVNLASNNLHGEIPYEHGQLPP-SIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIF 176 (513)
Q Consensus 98 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~-~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~ 176 (513)
.+.+++.+++++|.+. .+|. .+.++++|++|++++|.+.+..|..|..+++|++|++++|.+++..+..|.
T Consensus 49 ~l~~l~~l~l~~~~l~--------~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 120 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR--------KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 120 (597)
T ss_dssp GGCCCSEEEESSCEES--------EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCCCceEEEeeCCCCC--------CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHc
Confidence 4678899999998876 4444 467889999999999999987778899999999999999999988888888
Q ss_pred CCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcE
Q 041374 177 NISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFR 256 (513)
Q Consensus 177 ~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 256 (513)
++++|++|++++|.+. .+|..++..+++|++|++++|.+++..|..+..+++|++|++++|.+.+. .+..+++|+.
T Consensus 121 ~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~ 196 (597)
T 3oja_B 121 NVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFH 196 (597)
T ss_dssp TCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSE
T ss_pred CCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---Chhhhhhhhh
Confidence 9999999999999888 67777655788999999999998877777888889999999999888754 3566778888
Q ss_pred EEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEE
Q 041374 257 LNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGF 336 (513)
Q Consensus 257 L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L 336 (513)
|++++|.+.+ +...++|+.|++++|.+. ...+. ..++|+.|
T Consensus 197 L~l~~n~l~~-----------l~~~~~L~~L~ls~n~l~-------------------------~~~~~---~~~~L~~L 237 (597)
T 3oja_B 197 ANVSYNLLST-----------LAIPIAVEELDASHNSIN-------------------------VVRGP---VNVELTIL 237 (597)
T ss_dssp EECCSSCCSE-----------EECCTTCSEEECCSSCCC-------------------------EEECS---CCSCCCEE
T ss_pred hhcccCcccc-----------ccCCchhheeeccCCccc-------------------------ccccc---cCCCCCEE
Confidence 8888877654 222344555555555443 21111 12578899
Q ss_pred eccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccc
Q 041374 337 GLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEV 416 (513)
Q Consensus 337 ~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~ 416 (513)
++++|.+++. .++..+++|+.|++++|.+.+..|..+... +.|+.|++++|.+++ +|..+
T Consensus 238 ~L~~n~l~~~------------------~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~-l~~~~ 297 (597)
T 3oja_B 238 KLQHNNLTDT------------------AWLLNYPGLVEVDLSYNELEKIMYHPFVKM-QRLERLYISNNRLVA-LNLYG 297 (597)
T ss_dssp ECCSSCCCCC------------------GGGGGCTTCSEEECCSSCCCEEESGGGTTC-SSCCEEECTTSCCCE-EECSS
T ss_pred ECCCCCCCCC------------------hhhccCCCCCEEECCCCccCCCCHHHhcCc-cCCCEEECCCCCCCC-CCccc
Confidence 9999988852 235567899999999999987666666544 445999999999885 56666
Q ss_pred cCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCccc
Q 041374 417 GNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHI 484 (513)
Q Consensus 417 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 484 (513)
..+++|+.|++++|.+. .+|..+..+++|+.|+|++|.+.+. + +..+++|+.|++++|++.+..
T Consensus 298 ~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 298 QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHH
T ss_pred ccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChh
Confidence 77889999999999988 6788888889999999999998744 3 667888999999999987543
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.7e-34 Score=288.85 Aligned_cols=334 Identities=18% Similarity=0.209 Sum_probs=245.2
Q ss_pred CCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCC
Q 041374 100 SFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNIS 179 (513)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 179 (513)
+++++|+|++|.+++.. +..|.++++|++|++++|.+++..|..|.++++|++|++++|.++...+..|.+++
T Consensus 32 ~~l~~L~L~~n~l~~~~-------~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 104 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLN-------QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS 104 (477)
T ss_dssp TTCSEEECCSSCCCEEC-------TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCT
T ss_pred CCCcEEECCCCccceEC-------HhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCC
Confidence 47788888888877322 34677788888888888888877777888888888888888888777667777888
Q ss_pred CCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEc
Q 041374 180 SLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNF 259 (513)
Q Consensus 180 ~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L 259 (513)
+|++|++++|.+.+..|..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++
T Consensus 105 ~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 183 (477)
T 2id5_A 105 NLTKLDISENKIVILLDYMFQ-DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL 183 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTT-TCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEE
T ss_pred CCCEEECCCCccccCChhHcc-ccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeC
Confidence 888888888888754454444 7788888888888888777777888888888888888887666666788888888888
Q ss_pred CCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEecc
Q 041374 260 GKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLE 339 (513)
Q Consensus 260 ~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~ 339 (513)
++|.+..... ..+..+++|+.|++++|... +.+|.......+|++|+++
T Consensus 184 ~~n~i~~~~~------~~~~~l~~L~~L~l~~~~~~-------------------------~~~~~~~~~~~~L~~L~l~ 232 (477)
T 2id5_A 184 RHLNINAIRD------YSFKRLYRLKVLEISHWPYL-------------------------DTMTPNCLYGLNLTSLSIT 232 (477)
T ss_dssp ESCCCCEECT------TCSCSCTTCCEEEEECCTTC-------------------------CEECTTTTTTCCCSEEEEE
T ss_pred CCCcCcEeCh------hhcccCcccceeeCCCCccc-------------------------cccCcccccCccccEEECc
Confidence 8887765332 23455556666666554433 2333334445689999999
Q ss_pred CCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCC
Q 041374 340 YNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNL 419 (513)
Q Consensus 340 ~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l 419 (513)
+|.+++..+. .+..+++|+.|++++|.+.+. +...+.....|++|++++|++++..+..+..+
T Consensus 233 ~n~l~~~~~~----------------~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 295 (477)
T 2id5_A 233 HCNLTAVPYL----------------AVRHLVYLRFLNLSYNPISTI-EGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL 295 (477)
T ss_dssp SSCCCSCCHH----------------HHTTCTTCCEEECCSSCCCEE-CTTSCTTCTTCCEEECCSSCCSEECTTTBTTC
T ss_pred CCcccccCHH----------------HhcCccccCeeECCCCcCCcc-ChhhccccccCCEEECCCCccceECHHHhcCc
Confidence 9998842222 345678999999999999844 44444455566999999999998889999999
Q ss_pred CCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhc
Q 041374 420 KNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLEN 490 (513)
Q Consensus 420 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~ 490 (513)
++|+.|++++|.+++..+..|..+++|++|++++|++........ -......+.+.++.....-|..+.+
T Consensus 296 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~-~~~~~~~~~~~~~~~~C~~p~~~~g 365 (477)
T 2id5_A 296 NYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLW-VFRRRWRLNFNRQQPTCATPEFVQG 365 (477)
T ss_dssp TTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHH-HHTTTTSSCCTTCCCBEEESGGGTT
T ss_pred ccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHh-HHhhhhccccCccCceeCCchHHcC
Confidence 999999999999997666778999999999999999985432211 1123334555666655555665554
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.8e-34 Score=285.86 Aligned_cols=372 Identities=17% Similarity=0.199 Sum_probs=279.2
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 155 (513)
.+++.|++++|.+.+. + ++.+++|++|++++|.+++ ++ ++++++|++|++++|.+++ +| ++.++
T Consensus 64 ~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~--------~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~ 127 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN--------LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNP 127 (457)
T ss_dssp TTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC--------CC--CTTCTTCCEEECCSSCCSC-CC--CTTCT
T ss_pred CCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce--------ee--cCCCCcCCEEECCCCcCCe-ec--CCCCC
Confidence 6899999999999985 3 8899999999999999983 33 7889999999999999988 44 89999
Q ss_pred CCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeC
Q 041374 156 SLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDL 235 (513)
Q Consensus 156 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 235 (513)
+|++|++++|.+++. .+..+++|++|++++|...+.++ +. .+++|++|++++|++++ +| +..+++|+.|++
T Consensus 128 ~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~--~~-~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l 198 (457)
T 3bz5_A 128 LLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD--VT-PQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNC 198 (457)
T ss_dssp TCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC--CT-TCTTCCEEECCSSCCCC-CC--CTTCTTCCEEEC
T ss_pred cCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc--cc-cCCcCCEEECCCCccce-ec--cccCCCCCEEEC
Confidence 999999999999985 38899999999999997665663 33 78999999999999995 55 888999999999
Q ss_pred ccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhcccc------cc
Q 041374 236 SLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSS------TI 309 (513)
Q Consensus 236 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~------~l 309 (513)
++|.+++. .++.+++|++|++++|++++.+ +..+++|+.|++++|.+.+..+..+..+.. .+
T Consensus 199 ~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip---------~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L 266 (457)
T 3bz5_A 199 DTNNITKL---DLNQNIQLTFLDCSSNKLTEID---------VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDL 266 (457)
T ss_dssp CSSCCSCC---CCTTCTTCSEEECCSSCCSCCC---------CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCC
T ss_pred cCCcCCee---ccccCCCCCEEECcCCcccccC---------ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCC
Confidence 99999864 4889999999999999998721 677899999999999999876655544331 25
Q ss_pred ceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChH
Q 041374 310 ILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPP 389 (513)
Q Consensus 310 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~ 389 (513)
+.++++.|.+.+.+| +..+++|+.|++++|...+.+|.....++.|++ ..+++|++|++++|++++ ++
T Consensus 267 ~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l--------~~~~~L~~L~L~~N~l~~-l~- 334 (457)
T 3bz5_A 267 LEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDL--------SQNPKLVYLYLNNTELTE-LD- 334 (457)
T ss_dssp SCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCC--------TTCTTCCEEECTTCCCSC-CC-
T ss_pred CEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEech--------hhcccCCEEECCCCcccc-cc-
Confidence 666677776666665 456788899999998888777766666665543 345788888888888875 33
Q ss_pred HHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccC-CC
Q 041374 390 QILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNT-LK 468 (513)
Q Consensus 390 ~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~ 468 (513)
+ ...+.|+.|++++|++++ ++.|+.|++++|.+.|. ..+..|+.+++++|+++|.+|..+.. ..
T Consensus 335 -l-~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~~~~ 399 (457)
T 3bz5_A 335 -V-SHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLDQFG 399 (457)
T ss_dssp -C-TTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBCTTS
T ss_pred -c-ccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhcccC
Confidence 3 333445888888888774 24566777788877654 24456778888888888888876533 34
Q ss_pred CCCEEECCCCCCCcccch--hhhccc----Cc--eEEccCCcccccCCCCC
Q 041374 469 SIKELDLSRNNLSGHIPE--FLENLS----FN--KMNETINDFCHHKPKVF 511 (513)
Q Consensus 469 ~L~~L~l~~n~l~~~~p~--~l~~l~----~l--~l~l~~n~l~~~~p~~~ 511 (513)
.+.......+........ .+.+++ .. .+..+.|.++|+|+.-+
T Consensus 400 ~~~~~~~~~~~~y~~~~~~i~~k~~~~~~~~~~y~~~~~~~~fsG~i~~p~ 450 (457)
T 3bz5_A 400 NPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIVGTVTTPF 450 (457)
T ss_dssp CCCEEEESSSEEEETTTTEEEESSCCTTSCEECEEEECTTSSEEEEEEEEB
T ss_pred ceeeccCCCCccccCCCCeeEEEeccCCCceEEEEEecCCcEEeeEecccc
Confidence 444444443322111111 112222 11 44445788999987654
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.5e-32 Score=266.55 Aligned_cols=305 Identities=24% Similarity=0.349 Sum_probs=167.6
Q ss_pred cCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCccccc
Q 041374 97 GNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIF 176 (513)
Q Consensus 97 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~ 176 (513)
..+++|++|+++++.+. .++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.++.. ..+.
T Consensus 41 ~~l~~L~~L~l~~~~i~--------~~~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~--~~~~ 107 (347)
T 4fmz_A 41 EELESITKLVVAGEKVA--------SIQ-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDI--SALQ 107 (347)
T ss_dssp HHHTTCSEEECCSSCCC--------CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGT
T ss_pred hhcccccEEEEeCCccc--------cch-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCc--hHHc
Confidence 35566667777666665 333 356666777777777766653 32 66667777777777766543 2455
Q ss_pred CCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcE
Q 041374 177 NISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFR 256 (513)
Q Consensus 177 ~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 256 (513)
++++|++|++++|.+. .++. +. .+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++
T Consensus 108 ~l~~L~~L~l~~n~i~-~~~~-~~-~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~ 181 (347)
T 4fmz_A 108 NLTNLRELYLNEDNIS-DISP-LA-NLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYS 181 (347)
T ss_dssp TCTTCSEEECTTSCCC-CCGG-GT-TCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSE
T ss_pred CCCcCCEEECcCCccc-Cchh-hc-cCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCE
Confidence 6666666666666655 3333 22 56666666666665443333 35666666666666666553322 555566666
Q ss_pred EEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEE
Q 041374 257 LNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGF 336 (513)
Q Consensus 257 L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L 336 (513)
|++++|.+.... .+.. +++|+.+
T Consensus 182 L~l~~n~l~~~~--------~~~~-------------------------------------------------l~~L~~L 204 (347)
T 4fmz_A 182 LSLNYNQIEDIS--------PLAS-------------------------------------------------LTSLHYF 204 (347)
T ss_dssp EECTTSCCCCCG--------GGGG-------------------------------------------------CTTCCEE
T ss_pred EEccCCcccccc--------cccC-------------------------------------------------CCcccee
Confidence 666555543311 0222 3334444
Q ss_pred eccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccc
Q 041374 337 GLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEV 416 (513)
Q Consensus 337 ~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~ 416 (513)
++++|.+.+..+ +..+++|++|++++|.+. .++. +...+.|++|++++|.+++. ..+
T Consensus 205 ~l~~n~l~~~~~------------------~~~~~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~~ 261 (347)
T 4fmz_A 205 TAYVNQITDITP------------------VANMTRLNSLKIGNNKIT-DLSP--LANLSQLTWLEIGTNQISDI--NAV 261 (347)
T ss_dssp ECCSSCCCCCGG------------------GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGG
T ss_pred ecccCCCCCCch------------------hhcCCcCCEEEccCCccC-CCcc--hhcCCCCCEEECCCCccCCC--hhH
Confidence 444443332110 122344444444444443 2222 22223335555555555421 245
Q ss_pred cCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCc-e
Q 041374 417 GNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-K 495 (513)
Q Consensus 417 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~ 495 (513)
..+++|++|++++|.+.+ + ..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..| +..++.| +
T Consensus 262 ~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 337 (347)
T 4fmz_A 262 KDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDS 337 (347)
T ss_dssp TTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSE
T ss_pred hcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccce
Confidence 566667777777776663 2 345666777777777777766666666677777777777777765544 6666666 7
Q ss_pred EEccCCccc
Q 041374 496 MNETINDFC 504 (513)
Q Consensus 496 l~l~~n~l~ 504 (513)
+++++|+|+
T Consensus 338 L~l~~N~i~ 346 (347)
T 4fmz_A 338 ADFANQVIK 346 (347)
T ss_dssp ESSSCC---
T ss_pred eehhhhccc
Confidence 777777664
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.1e-31 Score=258.53 Aligned_cols=303 Identities=21% Similarity=0.340 Sum_probs=221.5
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 155 (513)
.+++.|+++++.+... +.+..+++|++|++++|.++ .++. +.++++|++|++++|.++. ++ .+..++
T Consensus 44 ~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n~i~--------~~~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~ 110 (347)
T 4fmz_A 44 ESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQIT--------DISP-LSNLVKLTNLYIGTNKITD-IS-ALQNLT 110 (347)
T ss_dssp TTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC--------CCGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCT
T ss_pred ccccEEEEeCCccccc--hhhhhcCCccEEEccCCccc--------cchh-hhcCCcCCEEEccCCcccC-ch-HHcCCC
Confidence 6799999999988764 34889999999999999987 4454 8899999999999999987 44 699999
Q ss_pred CCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeC
Q 041374 156 SLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDL 235 (513)
Q Consensus 156 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 235 (513)
+|++|++++|.+++..+ +..+++|+.|++++|.....++. +. .+++|++|++++|.+.+. +. +..+++|++|++
T Consensus 111 ~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~-~~-~l~~L~~L~l~~~~~~~~-~~-~~~l~~L~~L~l 184 (347)
T 4fmz_A 111 NLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LS-NMTGLNYLTVTESKVKDV-TP-IANLTDLYSLSL 184 (347)
T ss_dssp TCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG-GT-TCTTCCEEECCSSCCCCC-GG-GGGCTTCSEEEC
T ss_pred cCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccccc-hh-hCCCCcEEEecCCCcCCc-hh-hccCCCCCEEEc
Confidence 99999999999987644 88999999999999976645444 44 899999999999999854 33 889999999999
Q ss_pred ccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEec
Q 041374 236 SLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMG 315 (513)
Q Consensus 236 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~ 315 (513)
++|.+.+..+ +..+++|+.+++++|.+.... .+..+++|+.|++++|.+.+.
T Consensus 185 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--------~~~~~~~L~~L~l~~n~l~~~------------------ 236 (347)
T 4fmz_A 185 NYNQIEDISP--LASLTSLHYFTAYVNQITDIT--------PVANMTRLNSLKIGNNKITDL------------------ 236 (347)
T ss_dssp TTSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--------GGGGCTTCCEEECCSSCCCCC------------------
T ss_pred cCCccccccc--ccCCCccceeecccCCCCCCc--------hhhcCCcCCEEEccCCccCCC------------------
Confidence 9999985443 888999999999998776521 133444444444444433311
Q ss_pred cccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhh
Q 041374 316 LNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGIL 395 (513)
Q Consensus 316 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~ 395 (513)
+. +..+++|++|++++|.+++. ..+..+++|
T Consensus 237 --------~~-~~~l~~L~~L~l~~n~l~~~------------------~~~~~l~~L---------------------- 267 (347)
T 4fmz_A 237 --------SP-LANLSQLTWLEIGTNQISDI------------------NAVKDLTKL---------------------- 267 (347)
T ss_dssp --------GG-GTTCTTCCEEECCSSCCCCC------------------GGGTTCTTC----------------------
T ss_pred --------cc-hhcCCCCCEEECCCCccCCC------------------hhHhcCCCc----------------------
Confidence 11 33444555555555554421 012233444
Q ss_pred cccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEEC
Q 041374 396 TLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDL 475 (513)
Q Consensus 396 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 475 (513)
++|++++|++++. ..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..| +..+++|+.|++
T Consensus 268 ---~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 340 (347)
T 4fmz_A 268 ---KMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADF 340 (347)
T ss_dssp ---CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESS
T ss_pred ---CEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeeh
Confidence 5555555555432 245667788888888888877777778888888888888888876555 777888888888
Q ss_pred CCCCCC
Q 041374 476 SRNNLS 481 (513)
Q Consensus 476 ~~n~l~ 481 (513)
++|+|+
T Consensus 341 ~~N~i~ 346 (347)
T 4fmz_A 341 ANQVIK 346 (347)
T ss_dssp SCC---
T ss_pred hhhccc
Confidence 888875
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.9e-31 Score=262.96 Aligned_cols=310 Identities=18% Similarity=0.180 Sum_probs=219.5
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 155 (513)
.+++.++++++.+....+..+.++++|++|++++|.+++. .+..|..+++|++|++++|.+.+..|..|.+++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI-------DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEE-------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCccccc-------ChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC
Confidence 5788999999998886666788999999999999998732 234788999999999999999998888899999
Q ss_pred CCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeC
Q 041374 156 SLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDL 235 (513)
Q Consensus 156 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 235 (513)
+|++|++++|.++...+..|.++++|++|++++|.+.+..|..+. .+++|++|++++|++++. .+..+++|+.|++
T Consensus 118 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l 193 (390)
T 3o6n_A 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ-ATTSLQNLQLSSNRLTHV---DLSLIPSLFHANV 193 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTS-SCTTCCEEECCSSCCSBC---CGGGCTTCSEEEC
T ss_pred CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhcc-CCCCCCEEECCCCcCCcc---ccccccccceeec
Confidence 999999999999977677789999999999999999954444444 899999999999999854 3667899999999
Q ss_pred ccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEec
Q 041374 236 SLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMG 315 (513)
Q Consensus 236 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~ 315 (513)
++|.+.+ +...++|++|++++|.+..... ...++|+.|++++|.+.+. .++..++. ++.++++
T Consensus 194 ~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~---------~~~~~L~~L~l~~n~l~~~--~~l~~l~~-L~~L~Ls 256 (390)
T 3o6n_A 194 SYNLLST-----LAIPIAVEELDASHNSINVVRG---------PVNVELTILKLQHNNLTDT--AWLLNYPG-LVEVDLS 256 (390)
T ss_dssp CSSCCSE-----EECCSSCSEEECCSSCCCEEEC---------CCCSSCCEEECCSSCCCCC--GGGGGCTT-CSEEECC
T ss_pred ccccccc-----cCCCCcceEEECCCCeeeeccc---------cccccccEEECCCCCCccc--HHHcCCCC-ccEEECC
Confidence 9998874 3445689999999999876322 2236777888887777643 23333333 4444444
Q ss_pred cccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhh
Q 041374 316 LNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGIL 395 (513)
Q Consensus 316 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~ 395 (513)
+|.+.+..|..+..++ +|++|++++|+++ .+|... ...
T Consensus 257 ~n~l~~~~~~~~~~l~----------------------------------------~L~~L~L~~n~l~-~~~~~~-~~l 294 (390)
T 3o6n_A 257 YNELEKIMYHPFVKMQ----------------------------------------RLERLYISNNRLV-ALNLYG-QPI 294 (390)
T ss_dssp SSCCCEEESGGGTTCS----------------------------------------SCCEEECCSSCCC-EEECSS-SCC
T ss_pred CCcCCCcChhHccccc----------------------------------------cCCEEECCCCcCc-ccCccc-CCC
Confidence 4444444444444444 4555555555444 222222 112
Q ss_pred cccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCccccc
Q 041374 396 TLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGS 459 (513)
Q Consensus 396 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 459 (513)
+.|++|++++|+++ .+|..+..+++|++|++++|++.+ ++ +..+++|++|++++|++...
T Consensus 295 ~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 295 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp TTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEHH
T ss_pred CCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce-eC--chhhccCCEEEcCCCCccch
Confidence 23355555555554 344445555666666666666652 22 45566677777777766643
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=1.1e-32 Score=264.39 Aligned_cols=271 Identities=18% Similarity=0.179 Sum_probs=198.8
Q ss_pred CCCcHHHHHHHHHHHhhCC-CCCCCCCCC----CCCCCCCcccceeeCC--------CCCcEEEEEcCCCCCccccCccc
Q 041374 30 LHSNETDRLAYLAIKSQLQ-DPLGVTKSW----NNSISLCQWTGVTCGH--------RHRRVTKLVLRNQSIGGFLSPYV 96 (513)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~~-~~~~~~~~w----~~~~~~c~~~~v~c~~--------~~~~v~~L~l~~~~~~~~~~~~l 96 (513)
..+...++.++++||.++. ++.++...| ....++|.|.|+.|.. ...+|+.|+++++.+. .+|..+
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l 100 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA 100 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence 3455678999999999985 887788899 4566899999999942 2368999999999988 567778
Q ss_pred cCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCccccc
Q 041374 97 GNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIF 176 (513)
Q Consensus 97 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~ 176 (513)
.++++|++|++++|.++ .+|..++++++|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|..+.
T Consensus 101 ~~l~~L~~L~L~~n~l~--------~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~ 171 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLM--------ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLA 171 (328)
T ss_dssp GGGTTCSEEEEESSCCC--------CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSE
T ss_pred hhCCCCCEEECCCCCcc--------chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHh
Confidence 88999999999999887 56777888999999999999988 5788899999999999999888888777665
Q ss_pred C---------CCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCcccccccccccc
Q 041374 177 N---------ISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKID 247 (513)
Q Consensus 177 ~---------l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~ 247 (513)
. +++|++|++++|.+. .+|..+. .+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..
T Consensus 172 ~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~-~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~ 248 (328)
T 4fcg_A 172 STDASGEHQGLVNLQSLRLEWTGIR-SLPASIA-NLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPI 248 (328)
T ss_dssp EEC-CCCEEESTTCCEEEEEEECCC-CCCGGGG-GCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCC
T ss_pred hccchhhhccCCCCCEEECcCCCcC-cchHhhc-CCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHH
Confidence 4 777777777777777 6676655 6777777777777777 35556777777777777777777677767
Q ss_pred ccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccc
Q 041374 248 FNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEV 327 (513)
Q Consensus 248 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 327 (513)
+..+++|++|++++|.+.+.. +..+..+++|+.|++++| .+.+.+|..+
T Consensus 249 ~~~l~~L~~L~L~~n~~~~~~------p~~~~~l~~L~~L~L~~n-------------------------~~~~~iP~~l 297 (328)
T 4fcg_A 249 FGGRAPLKRLILKDCSNLLTL------PLDIHRLTQLEKLDLRGC-------------------------VNLSRLPSLI 297 (328)
T ss_dssp TTCCCCCCEEECTTCTTCCBC------CTTGGGCTTCCEEECTTC-------------------------TTCCCCCGGG
T ss_pred hcCCCCCCEEECCCCCchhhc------chhhhcCCCCCEEeCCCC-------------------------CchhhccHHH
Confidence 777777777777766655422 233444455555555554 4444555555
Q ss_pred cCCCCCCEEeccCCcCc
Q 041374 328 KNLVNLNGFGLEYNQLT 344 (513)
Q Consensus 328 ~~~~~L~~L~l~~n~~~ 344 (513)
..+++|+.+++..+.+.
T Consensus 298 ~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 298 AQLPANCIILVPPHLQA 314 (328)
T ss_dssp GGSCTTCEEECCGGGSC
T ss_pred hhccCceEEeCCHHHHH
Confidence 55666666666655443
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=9e-31 Score=272.13 Aligned_cols=333 Identities=15% Similarity=0.126 Sum_probs=253.6
Q ss_pred CCCCCCCCCCCCCc----ccceeeCC------C----------CCcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCC
Q 041374 52 GVTKSWNNSISLCQ----WTGVTCGH------R----------HRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNN 111 (513)
Q Consensus 52 ~~~~~w~~~~~~c~----~~~v~c~~------~----------~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~ 111 (513)
..+.+|.++..||. |..+.|+. . ..+++.++++++.+....+..+.++++|++|++++|.
T Consensus 7 ~~l~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~ 86 (597)
T 3oja_B 7 YNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ 86 (597)
T ss_dssp ----CCCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC
T ss_pred ccccCCCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC
Confidence 34577877666653 55444431 0 0456888999998888777778899999999999999
Q ss_pred CcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcC
Q 041374 112 LHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRL 191 (513)
Q Consensus 112 l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l 191 (513)
+++.. |..|..+++|++|++++|.+.+..|..|+.+++|++|++++|.++...+..|.++++|++|++++|.+
T Consensus 87 l~~~~-------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l 159 (597)
T 3oja_B 87 IEEID-------TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 159 (597)
T ss_dssp CCEEC-------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCC-------hHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcC
Confidence 98432 34788999999999999999998888899999999999999999988777789999999999999999
Q ss_pred cccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCC
Q 041374 192 EGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGD 271 (513)
Q Consensus 192 ~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~ 271 (513)
.+..|..+. .+++|++|++++|.+++. + +..+++|+.|++++|.+.+ +...++|+.|++++|.+.....
T Consensus 160 ~~~~~~~~~-~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~-- 228 (597)
T 3oja_B 160 ERIEDDTFQ-ATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRG-- 228 (597)
T ss_dssp CBCCTTTTT-TCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEEC--
T ss_pred CCCChhhhh-cCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccccc--
Confidence 965555555 899999999999999854 2 5678999999999998874 3456789999999999876332
Q ss_pred chhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccc
Q 041374 272 LDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAI 351 (513)
Q Consensus 272 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 351 (513)
...++|+.|++++|.+.+. .++..++. ++.+++++|.+.+..|..+..+++|++|++++|.+++.
T Consensus 229 -------~~~~~L~~L~L~~n~l~~~--~~l~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l----- 293 (597)
T 3oja_B 229 -------PVNVELTILKLQHNNLTDT--AWLLNYPG-LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL----- 293 (597)
T ss_dssp -------SCCSCCCEEECCSSCCCCC--GGGGGCTT-CSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-----
T ss_pred -------ccCCCCCEEECCCCCCCCC--hhhccCCC-CCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-----
Confidence 1225789999999988863 56666665 88888888888877777788888888888888877741
Q ss_pred cCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCc
Q 041374 352 GELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENH 431 (513)
Q Consensus 352 ~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 431 (513)
|..+..+++|+.|++++|.+. .+|..+.... .|+.|++++|.+++. + +..+++|+.|++++|+
T Consensus 294 ------------~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~-~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 294 ------------NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD-RLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp ------------ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHT-TCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSC
T ss_pred ------------CcccccCCCCcEEECCCCCCC-ccCcccccCC-CCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCC
Confidence 222344577888888888776 6666654443 347777777777633 2 5566777777777777
Q ss_pred cCc
Q 041374 432 FSI 434 (513)
Q Consensus 432 ~~~ 434 (513)
+.+
T Consensus 357 ~~~ 359 (597)
T 3oja_B 357 WDC 359 (597)
T ss_dssp EEH
T ss_pred CCC
Confidence 654
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=3.9e-30 Score=247.64 Aligned_cols=130 Identities=18% Similarity=0.294 Sum_probs=84.0
Q ss_pred CCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEE
Q 041374 131 SALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLS 210 (513)
Q Consensus 131 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~ 210 (513)
+.|++|++++|.+++..+..|.++++|++|++++|.+++..|..+.++++|++|++++|.+. .+|..++ ++|++|+
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~---~~L~~L~ 127 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP---KTLQELR 127 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC---TTCCEEE
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc---ccccEEE
Confidence 45666666666666655556666666666666666666666666666666666666666665 5665543 5777888
Q ss_pred ccCCcccccCcccccCCCCCCeeeCccccccc--cccccccCCCCCcEEEcCCCCC
Q 041374 211 VRQNNYTGSLPHSLSNASNLQLLDLSLNHFSG--QVKIDFNRLPNLFRLNFGKNNL 264 (513)
Q Consensus 211 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~L~~n~~ 264 (513)
+++|.+++..+..+.++++|++|++++|.+.. ..+..+..+++|++|++++|.+
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 88887776655667777777777777777642 3444455555555555555544
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.6e-30 Score=249.09 Aligned_cols=127 Identities=20% Similarity=0.308 Sum_probs=94.2
Q ss_pred CCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCC
Q 041374 101 FLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISS 180 (513)
Q Consensus 101 ~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 180 (513)
++++++++++.++ .+|..+. ++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..+.++++
T Consensus 34 ~l~~l~~~~~~l~--------~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 103 (332)
T 2ft3_A 34 HLRVVQCSDLGLK--------AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRK 103 (332)
T ss_dssp ETTEEECCSSCCS--------SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTT
T ss_pred cCCEEECCCCCcc--------ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCC
Confidence 5677777777766 4454442 57888888888888766777888888888888888888777777888888
Q ss_pred CcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCcccccc
Q 041374 181 LELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFS 241 (513)
Q Consensus 181 L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~ 241 (513)
|++|++++|.+. .+|..++ ++|++|++++|.+++..+..+.++++|++|++++|.+.
T Consensus 104 L~~L~L~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 104 LQKLYISKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp CCEEECCSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred CCEEECCCCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence 888888888777 6676554 67788888888777554555677777777777777764
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=5.8e-30 Score=246.43 Aligned_cols=291 Identities=20% Similarity=0.274 Sum_probs=203.3
Q ss_pred CCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEE
Q 041374 131 SALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLS 210 (513)
Q Consensus 131 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~ 210 (513)
.++++++++++.++. +|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+.+..|..+. .+++|++|+
T Consensus 31 c~l~~l~~~~~~l~~-lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~ 106 (330)
T 1xku_A 31 CHLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA-PLVKLERLY 106 (330)
T ss_dssp EETTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTT-TCTTCCEEE
T ss_pred CCCeEEEecCCCccc-cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhc-CCCCCCEEE
Confidence 478899999888875 665554 6899999999999988777888889999999998888855566665 788888888
Q ss_pred ccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCccccccccc
Q 041374 211 VRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLD 290 (513)
Q Consensus 211 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 290 (513)
+++|+++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+....
T Consensus 107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------------------- 161 (330)
T 1xku_A 107 LSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG---------------------- 161 (330)
T ss_dssp CCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG----------------------
T ss_pred CCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccC----------------------
Confidence 8888887 5665543 68888888888887766666777888888887777654311
Q ss_pred ccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCC
Q 041374 291 TNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNC 370 (513)
Q Consensus 291 ~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~ 370 (513)
..+..+..+++|++|++++|.++. +|.. + .
T Consensus 162 -------------------------------~~~~~~~~l~~L~~L~l~~n~l~~-l~~~----------------~--~ 191 (330)
T 1xku_A 162 -------------------------------IENGAFQGMKKLSYIRIADTNITT-IPQG----------------L--P 191 (330)
T ss_dssp -------------------------------BCTTGGGGCTTCCEEECCSSCCCS-CCSS----------------C--C
T ss_pred -------------------------------cChhhccCCCCcCEEECCCCcccc-CCcc----------------c--c
Confidence 112234445566666666666552 2211 1 1
Q ss_pred CCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEe
Q 041374 371 QNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLY 450 (513)
Q Consensus 371 ~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 450 (513)
++|++|++++|++.+..|..+.. .+.|++|++++|++++..+..+..+++|++|++++|.+. .+|..+..+++|++|+
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~ 269 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASLKG-LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVY 269 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGGTT-CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEE
T ss_pred ccCCEEECCCCcCCccCHHHhcC-CCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEE
Confidence 46666677766666444444433 334477777777777666666777788888888888877 6777778888888888
Q ss_pred CCCCcccccccccccC------CCCCCEEECCCCCCCc--ccchhhhcccCc-eEEccCCc
Q 041374 451 MEGNSVTGSIPLALNT------LKSIKELDLSRNNLSG--HIPEFLENLSFN-KMNETIND 502 (513)
Q Consensus 451 L~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~~--~~p~~l~~l~~l-~l~l~~n~ 502 (513)
+++|++++..+..|+. .+.++.+++++|++.. ..|..+..+..+ .+++++|+
T Consensus 270 l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 270 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 8888887665555543 3678888888888753 456677888888 88888874
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=8.8e-32 Score=256.59 Aligned_cols=164 Identities=30% Similarity=0.519 Sum_probs=122.2
Q ss_pred CCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCC-CCCEEecccCcCcccChHHHHhhhcccceE
Q 041374 323 IPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQ-NLMLLSVSNNKLTGALPPQILGILTLSILL 401 (513)
Q Consensus 323 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~-~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L 401 (513)
+|..+..+++|++|++++|.+++.+|..+ ..++ +|++|++++|.+.+.+|..+.... |++|
T Consensus 141 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l----------------~~l~~~L~~L~L~~N~l~~~~~~~~~~l~--L~~L 202 (313)
T 1ogq_A 141 LPPSISSLPNLVGITFDGNRISGAIPDSY----------------GSFSKLFTSMTISRNRLTGKIPPTFANLN--LAFV 202 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSCCEEECCGGG----------------GCCCTTCCEEECCSSEEEEECCGGGGGCC--CSEE
T ss_pred CChHHhcCCCCCeEECcCCcccCcCCHHH----------------hhhhhcCcEEECcCCeeeccCChHHhCCc--ccEE
Confidence 33444555566666666666665444333 2333 677777777777766666655443 5788
Q ss_pred EccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCC
Q 041374 402 DLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLS 481 (513)
Q Consensus 402 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 481 (513)
++++|++++..|..+..+++|+.|++++|.+.+..|. +..+++|++|++++|++++.+|..+..+++|+.|++++|+++
T Consensus 203 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp ECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred ECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence 8888888777777888888888999998888865555 777888999999999988888888888889999999999988
Q ss_pred cccchhhhcccCc-eEEccCCc-cccc
Q 041374 482 GHIPEFLENLSFN-KMNETIND-FCHH 506 (513)
Q Consensus 482 ~~~p~~l~~l~~l-~l~l~~n~-l~~~ 506 (513)
|.+|.. ..++.| .+++++|+ ++|.
T Consensus 282 ~~ip~~-~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 282 GEIPQG-GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp EECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred ccCCCC-ccccccChHHhcCCCCccCC
Confidence 888876 778888 88888887 7764
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.4e-34 Score=292.16 Aligned_cols=371 Identities=16% Similarity=0.135 Sum_probs=238.9
Q ss_pred CcEEEEEcCCCCCccccCc-cccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCcccc-CC
Q 041374 76 RRVTKLVLRNQSIGGFLSP-YVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESL-GQ 153 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l-~~ 153 (513)
.+++.|+++++++...... .+..+++|++|++++|.++.... ..++..+..+++|++|++++|.+....+..+ ..
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~---~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 79 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARC---KDISSALRVNPALAELNLRSNELGDVGVHCVLQG 79 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHH---HHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHH---HHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHH
Confidence 4689999999998765433 37789999999999998874311 1345677888999999999999876444333 23
Q ss_pred CC----CCCEEEcccccCCc----cCcccccCCCCCcEEeCCCCcCcccCCccc----cCCCCCCCEEEccCCccccc--
Q 041374 154 LR----SLSFLDISENAFSG----MFHSSIFNISSLELIYPLENRLEGSLPVNI----GFSLPNLEDLSVRQNNYTGS-- 219 (513)
Q Consensus 154 l~----~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~----~~~l~~L~~L~l~~n~l~~~-- 219 (513)
++ +|++|++++|.++. .++..+..+++|++|++++|.+.+..+..+ ....++|++|++++|++++.
T Consensus 80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 159 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159 (461)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence 44 79999999999985 457888899999999999999874333322 22356899999999998864
Q ss_pred --CcccccCCCCCCeeeCcccccccccccccc-----CCCCCcEEEcCCCCCCCCCCCCchhhcccCCCccccccccccc
Q 041374 220 --LPHSLSNASNLQLLDLSLNHFSGQVKIDFN-----RLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTN 292 (513)
Q Consensus 220 --~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~-----~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n 292 (513)
++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.++.... ..++..+..+++|+.|++++|
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~--~~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC--RDLCGIVASKASLRELALGSN 237 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH--HHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH--HHHHHHHHhCCCccEEeccCC
Confidence 355667789999999999998765544443 36689999999998765321 113455667788888888888
Q ss_pred ccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCC
Q 041374 293 IFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQN 372 (513)
Q Consensus 293 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~ 372 (513)
.+.+.....+.. ..+..+++|++|++++|.+++..... ++..+..+++
T Consensus 238 ~l~~~~~~~l~~--------------------~~~~~~~~L~~L~L~~n~l~~~~~~~------------l~~~l~~~~~ 285 (461)
T 1z7x_W 238 KLGDVGMAELCP--------------------GLLHPSSRLRTLWIWECGITAKGCGD------------LCRVLRAKES 285 (461)
T ss_dssp BCHHHHHHHHHH--------------------HHTSTTCCCCEEECTTSCCCHHHHHH------------HHHHHHHCTT
T ss_pred cCChHHHHHHHH--------------------HHhcCCCCceEEECcCCCCCHHHHHH------------HHHHHhhCCC
Confidence 765432222211 11123456666666666655321110 1222334556
Q ss_pred CCEEecccCcCcccChHHHHhh----hcccceEEccCCcCccc----CCccccCCCCCCEEeCCCCccCccCCccccC--
Q 041374 373 LMLLSVSNNKLTGALPPQILGI----LTLSILLDLSGNLLTGS----IPTEVGNLKNLVQLDLSENHFSIEIPVSLSA-- 442 (513)
Q Consensus 373 L~~L~ls~n~l~~~~p~~~~~~----~~~l~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-- 442 (513)
|++|++++|.+.+..+..+... .+.|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+..
T Consensus 286 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 365 (461)
T 1z7x_W 286 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL 365 (461)
T ss_dssp CCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHH
T ss_pred cceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHH
Confidence 6666666666553333333222 13446666666666543 3344445566666666666665444333321
Q ss_pred ---CCCCCEEeCCCCcccc----cccccccCCCCCCEEECCCCCCCcc
Q 041374 443 ---CTTLEYLYMEGNSVTG----SIPLALNTLKSIKELDLSRNNLSGH 483 (513)
Q Consensus 443 ---l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~ 483 (513)
.++|++|++++|++++ .+|..+..+++|++|++++|++++.
T Consensus 366 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 366 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred cCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 4566666666666664 5566666666666666666666543
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.2e-30 Score=249.54 Aligned_cols=290 Identities=19% Similarity=0.247 Sum_probs=186.3
Q ss_pred CCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEE
Q 041374 131 SALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLS 210 (513)
Q Consensus 131 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~ 210 (513)
.+++.++++++.++. +|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+.+..|..+. .+++|++|+
T Consensus 33 c~l~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~ 108 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKA-VPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFS-PLRKLQKLY 108 (332)
T ss_dssp EETTEEECCSSCCSS-CCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGST-TCTTCCEEE
T ss_pred ccCCEEECCCCCccc-cCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhh-CcCCCCEEE
Confidence 378999999999875 666654 7899999999999988888899999999999999998855455555 788999999
Q ss_pred ccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCccccccccc
Q 041374 211 VRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLD 290 (513)
Q Consensus 211 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 290 (513)
+++|+++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+..... .+..+..+ +|+.|+++
T Consensus 109 L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 109 ISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF----EPGAFDGL-KLNYLRIS 180 (332)
T ss_dssp CCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGS----CTTSSCSC-CCSCCBCC
T ss_pred CCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCC----CcccccCC-ccCEEECc
Confidence 9999888 5666554 788999999988886666668888888888888887653110 01112222 34444444
Q ss_pred ccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCC
Q 041374 291 TNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNC 370 (513)
Q Consensus 291 ~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~ 370 (513)
+|.+.+ +|..+. ++|++|++++|.+.+..+.. +..+
T Consensus 181 ~n~l~~--------------------------l~~~~~--~~L~~L~l~~n~i~~~~~~~----------------l~~l 216 (332)
T 2ft3_A 181 EAKLTG--------------------------IPKDLP--ETLNELHLDHNKIQAIELED----------------LLRY 216 (332)
T ss_dssp SSBCSS--------------------------CCSSSC--SSCSCCBCCSSCCCCCCTTS----------------STTC
T ss_pred CCCCCc--------------------------cCcccc--CCCCEEECCCCcCCccCHHH----------------hcCC
Confidence 443321 111111 34444455555444322211 2223
Q ss_pred CCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEe
Q 041374 371 QNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLY 450 (513)
Q Consensus 371 ~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 450 (513)
++| ++|++++|++++..+..+..+++|++|++++|.+. .+|..+..+++|++|+
T Consensus 217 ~~L-------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~ 270 (332)
T 2ft3_A 217 SKL-------------------------YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVY 270 (332)
T ss_dssp TTC-------------------------SCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEE
T ss_pred CCC-------------------------CEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEE
Confidence 344 55555555555444445566666777777777666 5666666667777777
Q ss_pred CCCCcccccccccccC------CCCCCEEECCCCCCC--cccchhhhcccCc-eEEccCCc
Q 041374 451 MEGNSVTGSIPLALNT------LKSIKELDLSRNNLS--GHIPEFLENLSFN-KMNETIND 502 (513)
Q Consensus 451 L~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~--~~~p~~l~~l~~l-~l~l~~n~ 502 (513)
+++|++++..+..+.. .+.|+.|++++|++. +..|..+..++.+ .+++++|+
T Consensus 271 l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 271 LHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 7777766555544443 245677777777765 4556667777777 77777664
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2.1e-34 Score=291.03 Aligned_cols=341 Identities=15% Similarity=0.076 Sum_probs=219.6
Q ss_pred CCCCCCCEEEcccccCCcc----CcccccCCCCCcEEeCCCCcCcccCCccccCCCC----CCCEEEccCCcccc----c
Q 041374 152 GQLRSLSFLDISENAFSGM----FHSSIFNISSLELIYPLENRLEGSLPVNIGFSLP----NLEDLSVRQNNYTG----S 219 (513)
Q Consensus 152 ~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~----~L~~L~l~~n~l~~----~ 219 (513)
..+++|++|++++|.++.. ++..+..+++|++|++++|.+.+..+..+...++ +|++|++++|.++. .
T Consensus 25 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 104 (461)
T 1z7x_W 25 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 104 (461)
T ss_dssp HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH
Confidence 3344444444444444321 2233334444444444444443222222221222 56666666666653 3
Q ss_pred CcccccCCCCCCeeeCccccccccccccc-----cCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCccccccccccccc
Q 041374 220 LPHSLSNASNLQLLDLSLNHFSGQVKIDF-----NRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIF 294 (513)
Q Consensus 220 ~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-----~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~ 294 (513)
++..+..+++|++|++++|.+.+..+..+ ...++|++|++++|.++..... .++..+..+++|+.|++++|.+
T Consensus 105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~--~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE--PLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH--HHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH--HHHHHHhhCCCCCEEECcCCCc
Confidence 45566666677777777776654333322 2245677777777766542211 1234455566777777777766
Q ss_pred CCcCchhhhc----cccccceEEeccccceec----CCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCcc
Q 041374 295 GGVLPLSIAN----LSSTIILFTMGLNQIYGT----IPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSS 366 (513)
Q Consensus 295 ~~~~~~~~~~----~~~~l~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~ 366 (513)
.+..+..+.. ....++.+++++|.+.+. ++..+..+++|++|++++|.+.+.....+. +..
T Consensus 183 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~-----------~~~ 251 (461)
T 1z7x_W 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELC-----------PGL 251 (461)
T ss_dssp HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHH-----------HHH
T ss_pred chHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHH-----------HHH
Confidence 5544444332 122477788887777653 466677889999999999988753221110 011
Q ss_pred ccCCCCCCEEecccCcCccc----ChHHHHhhhcccceEEccCCcCcccCCcccc-----CCCCCCEEeCCCCccCcc--
Q 041374 367 LGNCQNLMLLSVSNNKLTGA----LPPQILGILTLSILLDLSGNLLTGSIPTEVG-----NLKNLVQLDLSENHFSIE-- 435 (513)
Q Consensus 367 l~~~~~L~~L~ls~n~l~~~----~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~~~~~-- 435 (513)
...+++|++|++++|.+++. ++..+.. .+.|++|++++|.+++..+..+. ..++|++|++++|.+++.
T Consensus 252 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 330 (461)
T 1z7x_W 252 LHPSSRLRTLWIWECGITAKGCGDLCRVLRA-KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACC 330 (461)
T ss_dssp TSTTCCCCEEECTTSCCCHHHHHHHHHHHHH-CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred hcCCCCceEEECcCCCCCHHHHHHHHHHHhh-CCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHH
Confidence 22468999999999999754 4544433 44569999999999765444333 337999999999999865
Q ss_pred --CCccccCCCCCCEEeCCCCcccccccccccC-----CCCCCEEECCCCCCCc----ccchhhhcccCc-eEEccCCcc
Q 041374 436 --IPVSLSACTTLEYLYMEGNSVTGSIPLALNT-----LKSIKELDLSRNNLSG----HIPEFLENLSFN-KMNETINDF 503 (513)
Q Consensus 436 --~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~----~~p~~l~~l~~l-~l~l~~n~l 503 (513)
++..+..+++|++|++++|++++..+..+.. .++|++|++++|++++ .+|..+..++.| ++++++|++
T Consensus 331 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 331 SHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp HHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred HHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 4566778899999999999998766655543 6799999999999996 789999999999 999999999
Q ss_pred ccc
Q 041374 504 CHH 506 (513)
Q Consensus 504 ~~~ 506 (513)
++.
T Consensus 411 ~~~ 413 (461)
T 1z7x_W 411 GDA 413 (461)
T ss_dssp CHH
T ss_pred CHH
Confidence 865
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.8e-28 Score=238.19 Aligned_cols=179 Identities=19% Similarity=0.264 Sum_probs=98.4
Q ss_pred CCCCCCcccceeeCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCc-ccCCCCCCCEEE
Q 041374 59 NSISLCQWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPP-SIGNLSALQNID 137 (513)
Q Consensus 59 ~~~~~c~~~~v~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-~~~~l~~L~~L~ 137 (513)
...+.|.|.++ |+ .+++.+.. +|..+. ++|++|++++|.+++ ++. .+.++++|++|+
T Consensus 25 ~~~~~C~~~~~-c~----------~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~--------~~~~~~~~l~~L~~L~ 82 (353)
T 2z80_A 25 QASLSCDRNGI-CK----------GSSGSLNS-IPSGLT--EAVKSLDLSNNRITY--------ISNSDLQRCVNLQALV 82 (353)
T ss_dssp --CCEECTTSE-EE----------CCSTTCSS-CCTTCC--TTCCEEECTTSCCCE--------ECTTTTTTCTTCCEEE
T ss_pred ccCCCCCCCeE-ee----------CCCCCccc-cccccc--ccCcEEECCCCcCcc--------cCHHHhccCCCCCEEE
Confidence 34567888776 53 34444443 333332 467777777777762 222 566777777777
Q ss_pred eecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCc-cccCCCCCCCEEEccCCc-
Q 041374 138 IAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPV-NIGFSLPNLEDLSVRQNN- 215 (513)
Q Consensus 138 l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~-~~~~~l~~L~~L~l~~n~- 215 (513)
+++|.+++..|..|.++++|++|++++|.+++..+..+.++++|++|++++|.+. .+|. ..+..+++|++|++++|.
T Consensus 83 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~ 161 (353)
T 2z80_A 83 LTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDT 161 (353)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSS
T ss_pred CCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCcc
Confidence 7777777666666777777777777777776555444556666666666666555 4443 222245555555555552
Q ss_pred ccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcC
Q 041374 216 YTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFG 260 (513)
Q Consensus 216 l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 260 (513)
+++..+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 162 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 206 (353)
T 2z80_A 162 FTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206 (353)
T ss_dssp CCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred ccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCC
Confidence 333333344444444444444444444333333333333333333
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.9e-28 Score=233.27 Aligned_cols=255 Identities=21% Similarity=0.273 Sum_probs=165.3
Q ss_pred CCCCcccceeeCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCc-ccCCCCCCCEEEee
Q 041374 61 ISLCQWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPP-SIGNLSALQNIDIA 139 (513)
Q Consensus 61 ~~~c~~~~v~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-~~~~l~~L~~L~l~ 139 (513)
.+.|.|.++.|... ++.. +|..+ .++|++|++++|.++ .+|. .+.++++|++|+++
T Consensus 4 ~C~C~~~~l~c~~~------------~l~~-ip~~~--~~~l~~L~L~~n~l~--------~i~~~~~~~l~~L~~L~L~ 60 (306)
T 2z66_A 4 RCSCSGTEIRCNSK------------GLTS-VPTGI--PSSATRLELESNKLQ--------SLPHGVFDKLTQLTKLSLS 60 (306)
T ss_dssp TCEEETTEEECCSS------------CCSS-CCSCC--CTTCCEEECCSSCCC--------CCCTTTTTTCTTCSEEECC
T ss_pred CCeeCCCEEEcCCC------------Cccc-CCCCC--CCCCCEEECCCCccC--------ccCHhHhhccccCCEEECC
Confidence 46688998888642 1211 22222 246677777777665 3333 35666777777777
Q ss_pred cCccccc--CccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCccc
Q 041374 140 GNRLHSR--VPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYT 217 (513)
Q Consensus 140 ~n~l~~~--~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~ 217 (513)
+|.+... .+..+..+++|++|++++|.++. ++..+..+++|++|++++|.+.+..+......+++|++|++++|.++
T Consensus 61 ~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 139 (306)
T 2z66_A 61 SNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 139 (306)
T ss_dssp SSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE
T ss_pred CCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCC
Confidence 7766532 24455566777777777776663 34456667777777777777663222123336677777777777776
Q ss_pred ccCcccccCCCCCCeeeCccccccc-cccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCC
Q 041374 218 GSLPHSLSNASNLQLLDLSLNHFSG-QVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGG 296 (513)
Q Consensus 218 ~~~~~~l~~l~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 296 (513)
+..+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.+
T Consensus 140 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~L~~N~l~~ 213 (306)
T 2z66_A 140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP------TAFNSLSSLQVLNMSHNNFFS 213 (306)
T ss_dssp ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT------TTTTTCTTCCEEECTTSCCSB
T ss_pred ccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH------HHhcCCCCCCEEECCCCccCc
Confidence 6666666677777777777777665 456666777777777777776665322 345566677777777777776
Q ss_pred cCchhhhccccccceEEeccccceecCCccccCCC-CCCEEeccCCcCccC
Q 041374 297 VLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLV-NLNGFGLEYNQLTGP 346 (513)
Q Consensus 297 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~ 346 (513)
..+..+..++. ++.+++++|.+.+..|..+..++ +|++|++++|.+.+.
T Consensus 214 ~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 214 LDTFPYKCLNS-LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCSGGGTTCTT-CCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred cChhhccCccc-CCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 66666666655 77888888888777777777774 888888988888764
No 52
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=4.6e-30 Score=267.57 Aligned_cols=433 Identities=13% Similarity=0.085 Sum_probs=290.6
Q ss_pred CcccceeeCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCc---ccCCCCCCCC-----CcccCCCCCCCE
Q 041374 64 CQWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLH---GEIPYEHGQL-----PPSIGNLSALQN 135 (513)
Q Consensus 64 c~~~~v~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~---~~~~~~~~~l-----~~~~~~l~~L~~ 135 (513)
.+|.++.+.. -+.+.+.+ .....++..+..+++|++|+++++... +.+|...+.. +.....+++|++
T Consensus 42 k~W~~~~~~~----~~~l~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~ 116 (592)
T 3ogk_B 42 RRWFKIDSET----REHVTMAL-CYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKS 116 (592)
T ss_dssp HHHHHHHHHH----CCEEEESC-GGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCE
T ss_pred HHHHHhhhcc----ccEEEEee-ccccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCe
Confidence 3687775421 12222322 222334455678888999999876432 2222221111 111126889999
Q ss_pred EEeecCcccccCccccCC-CC-CCCEEEccccc-CCc-cCcccccCCCCCcEEeCCCCcCcccCCc---cccCCCCCCCE
Q 041374 136 IDIAGNRLHSRVPESLGQ-LR-SLSFLDISENA-FSG-MFHSSIFNISSLELIYPLENRLEGSLPV---NIGFSLPNLED 208 (513)
Q Consensus 136 L~l~~n~l~~~~p~~l~~-l~-~L~~L~Ls~n~-i~~-~~~~~~~~l~~L~~L~l~~n~l~~~lp~---~~~~~l~~L~~ 208 (513)
|++++|.+++..+..+.. ++ +|++|++++|. ++. ..+....++++|++|++++|.+.+.-.. .+...+++|++
T Consensus 117 L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~ 196 (592)
T 3ogk_B 117 VHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEV 196 (592)
T ss_dssp EEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCE
T ss_pred EEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccE
Confidence 999999887665555555 33 49999999886 221 1222334788999999999987644211 12225789999
Q ss_pred EEccCCccc----ccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCccc
Q 041374 209 LSVRQNNYT----GSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKL 284 (513)
Q Consensus 209 L~l~~n~l~----~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L 284 (513)
|++++|.++ +.++..+.++++|++|++++|.+.+ .+..+..+++|++|+++........ ......+..+++|
T Consensus 197 L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~l~~~~~L 272 (592)
T 3ogk_B 197 LNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGM---PEKYMNLVFPRKL 272 (592)
T ss_dssp EECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTC---TTSSSCCCCCTTC
T ss_pred EEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccch---HHHHHHhhccccc
Confidence 999999887 2344556678999999999988875 5677888899999999764322111 1233556777888
Q ss_pred ccccccccccCCcCchhhhccccccceEEeccccceecCC-ccccCCCCCCEEeccCCcCccC-CC---ccccCCCCeEE
Q 041374 285 EAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIP-PEVKNLVNLNGFGLEYNQLTGP-IP---HAIGELRNLQL 359 (513)
Q Consensus 285 ~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~-~~---~~~~~l~~L~l 359 (513)
+.++++++ ..+.+|..+..++. ++.+++++|.+.+... ..+..+++|++|+++ +.+.+. ++ ..+.+++.|++
T Consensus 273 ~~L~l~~~-~~~~l~~~~~~~~~-L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L 349 (592)
T 3ogk_B 273 CRLGLSYM-GPNEMPILFPFAAQ-IRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRI 349 (592)
T ss_dssp CEEEETTC-CTTTGGGGGGGGGG-CCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEE
T ss_pred cccCcccc-chhHHHHHHhhcCC-CcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEe
Confidence 88888774 33445566666665 8899998888654433 345778889999988 444332 22 23467888888
Q ss_pred ec-----------c-CC-----ccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEcc----CCcCccc-----CC
Q 041374 360 RG-----------N-VP-----SSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLS----GNLLTGS-----IP 413 (513)
Q Consensus 360 ~~-----------~-~~-----~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~----~n~l~~~-----~~ 413 (513)
++ + +. .....+++|++|+++.+.+++..+..+....+.|+.|+++ .|.+++. ++
T Consensus 350 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~ 429 (592)
T 3ogk_B 350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR 429 (592)
T ss_dssp ECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHH
T ss_pred ecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHH
Confidence 82 1 11 1124589999999988899877777776656667999996 5677653 33
Q ss_pred ccccCCCCCCEEeCCCCc--cCccCCcccc-CCCCCCEEeCCCCccccc-ccccccCCCCCCEEECCCCCCCcc-cchhh
Q 041374 414 TEVGNLKNLVQLDLSENH--FSIEIPVSLS-ACTTLEYLYMEGNSVTGS-IPLALNTLKSIKELDLSRNNLSGH-IPEFL 488 (513)
Q Consensus 414 ~~~~~l~~L~~L~l~~n~--~~~~~~~~~~-~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~-~p~~l 488 (513)
..+..+++|++|++++|. +++..+..+. .+++|++|++++|++++. ++..+..+++|++|++++|++++. ++...
T Consensus 430 ~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 509 (592)
T 3ogk_B 430 SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAV 509 (592)
T ss_dssp HHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHH
T ss_pred HHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHH
Confidence 335678999999998654 5655555443 488999999999999863 455667889999999999998755 45556
Q ss_pred hcccCc-eEEccCCcccccCC
Q 041374 489 ENLSFN-KMNETINDFCHHKP 508 (513)
Q Consensus 489 ~~l~~l-~l~l~~n~l~~~~p 508 (513)
..++.| ++++++|++++.-.
T Consensus 510 ~~l~~L~~L~ls~n~it~~~~ 530 (592)
T 3ogk_B 510 TKLPSLRYLWVQGYRASMTGQ 530 (592)
T ss_dssp HHCSSCCEEEEESCBCCTTCT
T ss_pred HhcCccCeeECcCCcCCHHHH
Confidence 788999 99999999887643
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=4.6e-27 Score=225.24 Aligned_cols=231 Identities=23% Similarity=0.287 Sum_probs=108.3
Q ss_pred CCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEE
Q 041374 179 SSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLN 258 (513)
Q Consensus 179 ~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 258 (513)
..++.|++++|.+. .+|..++ .+++|++|++++|.++ .+|..++++++|++|++++|.+. .+|..+..+++|++|+
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~-~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAF-RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGG-GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred cceeEEEccCCCch-hcChhhh-hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 45555555555555 5555554 4555555555555555 45555555555555555555554 3444444444444444
Q ss_pred cCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEec
Q 041374 259 FGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGL 338 (513)
Q Consensus 259 L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 338 (513)
+++|.+ .+.+|..+... ..+..+..+++|++|++
T Consensus 157 L~~n~~------------------------------~~~~p~~~~~~----------------~~~~~~~~l~~L~~L~L 190 (328)
T 4fcg_A 157 IRACPE------------------------------LTELPEPLAST----------------DASGEHQGLVNLQSLRL 190 (328)
T ss_dssp EEEETT------------------------------CCCCCSCSEEE----------------C-CCCEEESTTCCEEEE
T ss_pred CCCCCC------------------------------ccccChhHhhc----------------cchhhhccCCCCCEEEC
Confidence 444332 22222221110 11122344556666666
Q ss_pred cCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccC
Q 041374 339 EYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGN 418 (513)
Q Consensus 339 ~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~ 418 (513)
++|.++ .+| ..+..+++|++|++++|.+. .+|..+... +.|++|++++|.+.+.+|..+..
T Consensus 191 ~~n~l~-~lp----------------~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l-~~L~~L~Ls~n~~~~~~p~~~~~ 251 (328)
T 4fcg_A 191 EWTGIR-SLP----------------ASIANLQNLKSLKIRNSPLS-ALGPAIHHL-PKLEELDLRGCTALRNYPPIFGG 251 (328)
T ss_dssp EEECCC-CCC----------------GGGGGCTTCCEEEEESSCCC-CCCGGGGGC-TTCCEEECTTCTTCCBCCCCTTC
T ss_pred cCCCcC-cch----------------HhhcCCCCCCEEEccCCCCC-cCchhhccC-CCCCEEECcCCcchhhhHHHhcC
Confidence 666555 222 22334455555555555554 233332222 22244444444444444444444
Q ss_pred CCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCC
Q 041374 419 LKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRN 478 (513)
Q Consensus 419 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 478 (513)
+++|++|++++|++.+.+|..+..+++|++|+|++|++.+.+|..+..+++|+.+++..+
T Consensus 252 l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 444444444444444444444444444444444444444444444444444444444433
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=9.7e-27 Score=239.69 Aligned_cols=158 Identities=25% Similarity=0.314 Sum_probs=87.6
Q ss_pred CCCCCCCCCCCCcccceeeC------CCCCcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcc
Q 041374 53 VTKSWNNSISLCQWTGVTCG------HRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPS 126 (513)
Q Consensus 53 ~~~~w~~~~~~c~~~~v~c~------~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~ 126 (513)
.+..|.....+|.|.+..|. -....++.|+++++.+. .+|..+. ++|++|++++|.++ .+|.
T Consensus 11 ~w~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~--------~lp~- 78 (622)
T 3g06_A 11 VWSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT--------SLPA- 78 (622)
T ss_dssp HHHHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS--------CCCC-
T ss_pred HHHHHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC--------CCCC-
Confidence 34556666678888664221 01134677777777776 3444443 67777777777766 3443
Q ss_pred cCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCC
Q 041374 127 IGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNL 206 (513)
Q Consensus 127 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L 206 (513)
.+++|++|++++|.+++ +|. .+++|++|++++|.+++... .+++|+.|++++|++. .+|.. +++|
T Consensus 79 --~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~-~lp~~----l~~L 143 (622)
T 3g06_A 79 --LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLT-SLPVL----PPGL 143 (622)
T ss_dssp --CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSSCCS-CCCCC----CTTC
T ss_pred --cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCCCCC-cCCCC----CCCC
Confidence 35677777777777665 443 45677777777776664322 3455555555555555 34432 2455
Q ss_pred CEEEccCCcccccCcccccCCCCCCeeeCcccccc
Q 041374 207 EDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFS 241 (513)
Q Consensus 207 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~ 241 (513)
++|++++|++++ +|. .+++|+.|++++|.+.
T Consensus 144 ~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~ 174 (622)
T 3g06_A 144 QELSVSDNQLAS-LPA---LPSELCKLWAYNNQLT 174 (622)
T ss_dssp CEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred CEEECcCCcCCC-cCC---ccCCCCEEECCCCCCC
Confidence 555555555542 232 1234444444444444
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=1.8e-25 Score=230.18 Aligned_cols=269 Identities=27% Similarity=0.306 Sum_probs=165.5
Q ss_pred CCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCC
Q 041374 100 SFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNIS 179 (513)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 179 (513)
.++++|++++|.++ .+|..+. ++|++|++++|.++. +|. .+++|++|++++|.++.. |. .++
T Consensus 40 ~~l~~L~ls~n~L~--------~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-p~---~l~ 101 (622)
T 3g06_A 40 NGNAVLNVGESGLT--------TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSL-PV---LPP 101 (622)
T ss_dssp HCCCEEECCSSCCS--------CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSCC-CC---CCT
T ss_pred CCCcEEEecCCCcC--------ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCcC-CC---CCC
Confidence 46899999999988 5555554 789999999999886 554 568899999999988743 32 556
Q ss_pred CCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEc
Q 041374 180 SLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNF 259 (513)
Q Consensus 180 ~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L 259 (513)
+|++|++++|.+. .+|. .+++|++|++++|+++ .+|.. +++|++|++++|.+.+ +|. .+++|+.|++
T Consensus 102 ~L~~L~Ls~N~l~-~l~~----~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L 168 (622)
T 3g06_A 102 GLLELSIFSNPLT-HLPA----LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWA 168 (622)
T ss_dssp TCCEEEECSCCCC-CCCC----CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred CCCEEECcCCcCC-CCCC----CCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEEC
Confidence 7777777777776 4554 3456777777777666 34432 3566666666666553 221 2344555555
Q ss_pred CCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEecc
Q 041374 260 GKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLE 339 (513)
Q Consensus 260 ~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~ 339 (513)
++|.++. +| ..+++|+.|+++
T Consensus 169 ~~N~l~~--------------------------------------------------------l~---~~~~~L~~L~Ls 189 (622)
T 3g06_A 169 YNNQLTS--------------------------------------------------------LP---MLPSGLQELSVS 189 (622)
T ss_dssp CSSCCSC--------------------------------------------------------CC---CCCTTCCEEECC
T ss_pred CCCCCCC--------------------------------------------------------Cc---ccCCCCcEEECC
Confidence 5544433 11 123445555555
Q ss_pred CCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCC
Q 041374 340 YNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNL 419 (513)
Q Consensus 340 ~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l 419 (513)
+|.+++ +|.. .++|+.|++++|.++ .+|.. .+.|+.|++++|++++ +| ..+
T Consensus 190 ~N~l~~-l~~~-------------------~~~L~~L~L~~N~l~-~l~~~----~~~L~~L~Ls~N~L~~-lp---~~l 240 (622)
T 3g06_A 190 DNQLAS-LPTL-------------------PSELYKLWAYNNRLT-SLPAL----PSGLKELIVSGNRLTS-LP---VLP 240 (622)
T ss_dssp SSCCSC-CCCC-------------------CTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSC-CC---CCC
T ss_pred CCCCCC-CCCc-------------------cchhhEEECcCCccc-ccCCC----CCCCCEEEccCCccCc-CC---CCC
Confidence 555542 1111 135555555555554 33321 2334666666666653 33 344
Q ss_pred CCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhccc
Q 041374 420 KNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLS 492 (513)
Q Consensus 420 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 492 (513)
++|+.|++++|.+. .+|. .+++|+.|++++|+++ .+|..+..+++|+.|++++|++++.+|..+..++
T Consensus 241 ~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 241 SELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 66777777777766 4554 4566777777777777 6666777777777777777777777776665544
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=3.7e-26 Score=217.43 Aligned_cols=250 Identities=21% Similarity=0.248 Sum_probs=194.1
Q ss_pred CEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCcc--CcccccCCCC
Q 041374 103 RFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGM--FHSSIFNISS 180 (513)
Q Consensus 103 ~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~--~~~~~~~l~~ 180 (513)
+.++.+++.++ .+|..+. ++|++|++++|.++...+..|.++++|++|++++|.++.. .+..+..+++
T Consensus 10 ~~l~c~~~~l~--------~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 79 (306)
T 2z66_A 10 TEIRCNSKGLT--------SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS 79 (306)
T ss_dssp TEEECCSSCCS--------SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSC
T ss_pred CEEEcCCCCcc--------cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccc
Confidence 46788888877 5665443 6899999999999975555689999999999999998744 3667778999
Q ss_pred CcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCc-ccccCCCCCCeeeCccccccccccccccCCCCCcEEEc
Q 041374 181 LELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLP-HSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNF 259 (513)
Q Consensus 181 L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L 259 (513)
|++|++++|.+. .+|..+. .+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 80 L~~L~Ls~n~i~-~l~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 157 (306)
T 2z66_A 80 LKYLDLSFNGVI-TMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 157 (306)
T ss_dssp CCEEECCSCSEE-EEEEEEE-TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEEC
T ss_pred cCEEECCCCccc-cChhhcC-CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEEC
Confidence 999999999998 6777766 79999999999999985544 57889999999999999998888888999999999999
Q ss_pred CCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEecc
Q 041374 260 GKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLE 339 (513)
Q Consensus 260 ~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~ 339 (513)
++|.+.+. ..+..+..+++|+.|++++|.+.+..|..+..++. ++.+++++|.+.+..+..+..+++|++|+++
T Consensus 158 ~~n~l~~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 231 (306)
T 2z66_A 158 AGNSFQEN-----FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS-LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 231 (306)
T ss_dssp TTCEEGGG-----EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT-CCEEECTTSCCSBCCSGGGTTCTTCCEEECT
T ss_pred CCCccccc-----cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCC-CCEEECCCCccCccChhhccCcccCCEeECC
Confidence 99987651 12345677788888888888887777777766665 7777777777776666566677777777777
Q ss_pred CCcCccCCCccccCCCCeEEeccCCccccCC-CCCCEEecccCcCccc
Q 041374 340 YNQLTGPIPHAIGELRNLQLRGNVPSSLGNC-QNLMLLSVSNNKLTGA 386 (513)
Q Consensus 340 ~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~~L~~L~ls~n~l~~~ 386 (513)
+|.+.+..+..+ ..+ ++|++|++++|.+.+.
T Consensus 232 ~N~l~~~~~~~~----------------~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 232 LNHIMTSKKQEL----------------QHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp TSCCCBCSSSSC----------------CCCCTTCCEEECTTCCEECS
T ss_pred CCCCcccCHHHH----------------HhhhccCCEEEccCCCeecc
Confidence 777765544433 222 3677777777776644
No 57
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=1.6e-29 Score=263.36 Aligned_cols=401 Identities=14% Similarity=0.070 Sum_probs=264.6
Q ss_pred CcEEEEEcCCCCCc---cccCccc------------cCCCCCCEEeCCCCCCcccCCCCCCCCCcccCC-CC-CCCEEEe
Q 041374 76 RRVTKLVLRNQSIG---GFLSPYV------------GNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGN-LS-ALQNIDI 138 (513)
Q Consensus 76 ~~v~~L~l~~~~~~---~~~~~~l------------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~-l~-~L~~L~l 138 (513)
.+++.|+++++... +.+|..+ ..+++|++|+|++|.+++.. +..+.. ++ +|++|++
T Consensus 73 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~-------~~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 73 PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLD-------LDRLAKARADDLETLKL 145 (592)
T ss_dssp TTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHH-------HHHHHHHHGGGCCEEEE
T ss_pred CCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHH-------HHHHHHhccccCcEEEC
Confidence 56888888764321 1222222 26888999999988776432 223333 33 4899999
Q ss_pred ecCcc-cc-cCccccCCCCCCCEEEcccccCCcc----CcccccCCCCCcEEeCCCCcCc----ccCCccccCCCCCCCE
Q 041374 139 AGNRL-HS-RVPESLGQLRSLSFLDISENAFSGM----FHSSIFNISSLELIYPLENRLE----GSLPVNIGFSLPNLED 208 (513)
Q Consensus 139 ~~n~l-~~-~~p~~l~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~----~~lp~~~~~~l~~L~~ 208 (513)
++|.. .. .++.....+++|++|++++|.+++. ++..+.++++|+.|++++|.+. +.++..+. .+++|++
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~-~~~~L~~ 224 (592)
T 3ogk_B 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR-NCRSLVS 224 (592)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHH-HCTTCCE
T ss_pred cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHh-hCCCCcE
Confidence 88762 21 1222334678899999999887655 3334567888999999888876 22333333 5788999
Q ss_pred EEccCCcccccCcccccCCCCCCeeeCcccccc---ccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccc
Q 041374 209 LSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFS---GQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLE 285 (513)
Q Consensus 209 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~---~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~ 285 (513)
|++++|.+.+ ++..+..+++|++|++++.... ...+..+..+++|+.++++++... ..+..+..+++|+
T Consensus 225 L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-------~l~~~~~~~~~L~ 296 (592)
T 3ogk_B 225 VKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-------EMPILFPFAAQIR 296 (592)
T ss_dssp EECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-------TGGGGGGGGGGCC
T ss_pred EeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-------HHHHHHhhcCCCc
Confidence 9999888874 6777888888888888753322 233445677788888888764322 2345566778888
Q ss_pred cccccccccCCcCch-hhhccccccceEEeccccceecCCccccCCCCCCEEeccC-----------CcCccCCC----c
Q 041374 286 AFGLDTNIFGGVLPL-SIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEY-----------NQLTGPIP----H 349 (513)
Q Consensus 286 ~L~l~~n~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~-----------n~~~~~~~----~ 349 (513)
.|++++|.+.+.... .+..+++ ++.+++..+-..+.++.....+++|++|++++ +.+++... .
T Consensus 297 ~L~Ls~~~l~~~~~~~~~~~~~~-L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~ 375 (592)
T 3ogk_B 297 KLDLLYALLETEDHCTLIQKCPN-LEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ 375 (592)
T ss_dssp EEEETTCCCCHHHHHHHHTTCTT-CCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHH
T ss_pred EEecCCCcCCHHHHHHHHHhCcC-CCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHh
Confidence 888888876554432 2345554 88888874333333444445678888888883 45553221 2
Q ss_pred cccCCCCeEEecc-----CCccccC-CCCCCEEecc----cCcCccc-----ChHHHHhhhcccceEEccCCc--CcccC
Q 041374 350 AIGELRNLQLRGN-----VPSSLGN-CQNLMLLSVS----NNKLTGA-----LPPQILGILTLSILLDLSGNL--LTGSI 412 (513)
Q Consensus 350 ~~~~l~~L~l~~~-----~~~~l~~-~~~L~~L~ls----~n~l~~~-----~p~~~~~~~~~l~~L~l~~n~--l~~~~ 412 (513)
...+++.|++..+ .+..+.. +++|+.|+++ .+.+++. ++.. ....+.|++|++++|. +++..
T Consensus 376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~-~~~~~~L~~L~L~~~~~~l~~~~ 454 (592)
T 3ogk_B 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL-LIGCKKLRRFAFYLRQGGLTDLG 454 (592)
T ss_dssp HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHH-HHHCTTCCEEEEECCGGGCCHHH
T ss_pred hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHH-HHhCCCCCEEEEecCCCCccHHH
Confidence 3567777777443 2233443 8899999997 5566642 2322 3445566999998654 66555
Q ss_pred Ccccc-CCCCCCEEeCCCCccCcc-CCccccCCCCCCEEeCCCCccccc-ccccccCCCCCCEEECCCCCCCcccchhh-
Q 041374 413 PTEVG-NLKNLVQLDLSENHFSIE-IPVSLSACTTLEYLYMEGNSVTGS-IPLALNTLKSIKELDLSRNNLSGHIPEFL- 488 (513)
Q Consensus 413 ~~~~~-~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~~l- 488 (513)
+..+. .+++|++|++++|.+++. ++..+..+++|++|+|++|.+++. ++..+..+++|+.|++++|++++.....+
T Consensus 455 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~ 534 (592)
T 3ogk_B 455 LSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQ 534 (592)
T ss_dssp HHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGG
T ss_pred HHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHH
Confidence 44444 488999999999998863 345557889999999999998755 44555678999999999999987644444
Q ss_pred hcccCc
Q 041374 489 ENLSFN 494 (513)
Q Consensus 489 ~~l~~l 494 (513)
..++.+
T Consensus 535 ~~~p~l 540 (592)
T 3ogk_B 535 MARPYW 540 (592)
T ss_dssp GCCTTE
T ss_pred HhCCCc
Confidence 356666
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=1.1e-25 Score=226.05 Aligned_cols=236 Identities=20% Similarity=0.181 Sum_probs=162.2
Q ss_pred cCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCch
Q 041374 194 SLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLD 273 (513)
Q Consensus 194 ~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~ 273 (513)
.+|..+. +++++|++++|++++..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.++....
T Consensus 68 ~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---- 140 (452)
T 3zyi_A 68 EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPS---- 140 (452)
T ss_dssp SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCT----
T ss_pred ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccCh----
Confidence 4554432 466777777777776666667777777777777777766666667777777777777766654322
Q ss_pred hhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccC
Q 041374 274 FIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGE 353 (513)
Q Consensus 274 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 353 (513)
..+..+++|+.|++++|.+. ...+..+..+++|++|++++|+..+.++.
T Consensus 141 --~~~~~l~~L~~L~L~~N~l~-------------------------~~~~~~~~~l~~L~~L~l~~~~~l~~i~~---- 189 (452)
T 3zyi_A 141 --GAFEYLSKLRELWLRNNPIE-------------------------SIPSYAFNRVPSLMRLDLGELKKLEYISE---- 189 (452)
T ss_dssp --TTSSSCTTCCEEECCSCCCC-------------------------EECTTTTTTCTTCCEEECCCCTTCCEECT----
T ss_pred --hhhcccCCCCEEECCCCCcc-------------------------eeCHhHHhcCCcccEEeCCCCCCccccCh----
Confidence 22334444444444444333 23334567788899999988654433332
Q ss_pred CCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccC
Q 041374 354 LRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFS 433 (513)
Q Consensus 354 l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 433 (513)
..+..+++|++|++++|++. .+|. + .....|++|++++|++++..|..+..+++|+.|++++|.+.
T Consensus 190 -----------~~~~~l~~L~~L~L~~n~l~-~~~~-~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~ 255 (452)
T 3zyi_A 190 -----------GAFEGLFNLKYLNLGMCNIK-DMPN-L-TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255 (452)
T ss_dssp -----------TTTTTCTTCCEEECTTSCCS-SCCC-C-TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCC
T ss_pred -----------hhccCCCCCCEEECCCCccc-cccc-c-cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCc
Confidence 23455688899999999887 4443 2 33445588888888888777788888888888888888888
Q ss_pred ccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCC
Q 041374 434 IEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLS 481 (513)
Q Consensus 434 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 481 (513)
+..+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|++.
T Consensus 256 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 256 LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred eECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 777788888888888888888888666677778888888888888865
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=1.3e-25 Score=224.84 Aligned_cols=247 Identities=22% Similarity=0.210 Sum_probs=176.8
Q ss_pred cEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCC
Q 041374 182 ELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGK 261 (513)
Q Consensus 182 ~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 261 (513)
+.++..+..+. .+|..+. ++++.|++++|++++..+..+.++++|++|++++|.+.+..+..|..+++|++|++++
T Consensus 46 ~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp CEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 44555555555 6666543 5677788888887766667777788888888888877766667777777777777777
Q ss_pred CCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCC
Q 041374 262 NNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYN 341 (513)
Q Consensus 262 n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 341 (513)
|.++.... ..+..+++|+.|++++|.+ ....+..+..+++|++|++++|
T Consensus 122 n~l~~~~~------~~~~~l~~L~~L~L~~N~i-------------------------~~~~~~~~~~l~~L~~L~l~~~ 170 (440)
T 3zyj_A 122 NRLTTIPN------GAFVYLSKLKELWLRNNPI-------------------------ESIPSYAFNRIPSLRRLDLGEL 170 (440)
T ss_dssp SCCSSCCT------TTSCSCSSCCEEECCSCCC-------------------------CEECTTTTTTCTTCCEEECCCC
T ss_pred CcCCeeCH------hHhhccccCceeeCCCCcc-------------------------cccCHHHhhhCcccCEeCCCCC
Confidence 77665332 2234445555555554443 3333445677888999999986
Q ss_pred cCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCC
Q 041374 342 QLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKN 421 (513)
Q Consensus 342 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~ 421 (513)
+..+.++. ..+..+++|++|++++|+++ .+|. +.....|++|++++|++++..+..+..+++
T Consensus 171 ~~l~~i~~---------------~~~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 232 (440)
T 3zyj_A 171 KRLSYISE---------------GAFEGLSNLRYLNLAMCNLR-EIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMH 232 (440)
T ss_dssp TTCCEECT---------------TTTTTCSSCCEEECTTSCCS-SCCC--CTTCSSCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCcceeCc---------------chhhcccccCeecCCCCcCc-cccc--cCCCcccCEEECCCCccCccChhhhccCcc
Confidence 54433332 23556688999999999887 5663 233445688888888888777888888888
Q ss_pred CCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCC
Q 041374 422 LVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLS 481 (513)
Q Consensus 422 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 481 (513)
|+.|++++|.+.+..+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|++.
T Consensus 233 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 233 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 888888888888777888888888888888888888777777788888888888888874
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=2e-27 Score=227.07 Aligned_cols=247 Identities=17% Similarity=0.186 Sum_probs=169.8
Q ss_pred CCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCC
Q 041374 202 SLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNC 281 (513)
Q Consensus 202 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~ 281 (513)
.+++|++|++++|++++..|..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++ +...
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-----------l~~~ 98 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-----------LLVG 98 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-----------EEEC
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-----------ccCC
Confidence 44566666666666665555566666666666666666654433 6666666666666665543 1122
Q ss_pred cccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEec
Q 041374 282 SKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRG 361 (513)
Q Consensus 282 ~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~ 361 (513)
++|+.|++++|.+.+ ..+. .+++|++|++++|.+++..+..
T Consensus 99 ~~L~~L~l~~n~l~~-------------------------~~~~---~~~~L~~L~l~~N~l~~~~~~~----------- 139 (317)
T 3o53_A 99 PSIETLHAANNNISR-------------------------VSCS---RGQGKKNIYLANNKITMLRDLD----------- 139 (317)
T ss_dssp TTCCEEECCSSCCSE-------------------------EEEC---CCSSCEEEECCSSCCCSGGGBC-----------
T ss_pred CCcCEEECCCCccCC-------------------------cCcc---ccCCCCEEECCCCCCCCccchh-----------
Confidence 444555554444432 2211 2456788888888777543333
Q ss_pred cCCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccc
Q 041374 362 NVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLS 441 (513)
Q Consensus 362 ~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 441 (513)
+..+++|++|++++|.+.+..+..+......|++|++++|.+++. + ....+++|++|++++|.+. .+|..+.
T Consensus 140 -----~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~-~l~~~~~ 211 (317)
T 3o53_A 140 -----EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLA-FMGPEFQ 211 (317)
T ss_dssp -----TGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCC-EECGGGG
T ss_pred -----hhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCC-cchhhhc
Confidence 344577888888888887655665554555668888888888754 3 2335889999999999998 4566688
Q ss_pred CCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCC-cccchhhhcccCc-eEEccCC-cccccCCC
Q 041374 442 ACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLS-GHIPEFLENLSFN-KMNETIN-DFCHHKPK 509 (513)
Q Consensus 442 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~p~~l~~l~~l-~l~l~~n-~l~~~~p~ 509 (513)
.+++|++|++++|+++ .+|..+..+++|+.|++++|++. +.+|.++..++.+ .+++++| .+.|..|.
T Consensus 212 ~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 212 SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp GGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred ccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 8999999999999998 67888888999999999999998 7788888888888 8888843 46666554
No 61
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=2.1e-26 Score=223.65 Aligned_cols=256 Identities=18% Similarity=0.178 Sum_probs=175.6
Q ss_pred CCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCccc
Q 041374 205 NLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKL 284 (513)
Q Consensus 205 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L 284 (513)
+|++|++++|.+++..+..+.++++|++|++++|.+.+..+..+.++++|++|++++|.++... ...+..+++|
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~------~~~~~~l~~L 126 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS------SSWFKPLSSL 126 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCC------HHHHTTCTTC
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCC------HhHhCCCccC
Confidence 4555555555555333334555555555555555555444445555555555555555554321 1224445555
Q ss_pred ccccccccccCCcCc-hhhhccccccceEEeccc-cceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEecc
Q 041374 285 EAFGLDTNIFGGVLP-LSIANLSSTIILFTMGLN-QIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGN 362 (513)
Q Consensus 285 ~~L~l~~n~~~~~~~-~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~ 362 (513)
+.|++++|.+.+..+ ..+..++. ++.++++.| .+.+..+..+..+++|++|++++|.+.+..|.
T Consensus 127 ~~L~L~~n~l~~l~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------- 192 (353)
T 2z80_A 127 TFLNLLGNPYKTLGETSLFSHLTK-LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK------------- 192 (353)
T ss_dssp SEEECTTCCCSSSCSSCSCTTCTT-CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT-------------
T ss_pred CEEECCCCCCcccCchhhhccCCC-CcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH-------------
Confidence 555555555554333 34455554 889999988 46666677888899999999999988865444
Q ss_pred CCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCcccc---CCCCCCEEeCCCCccCc----c
Q 041374 363 VPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVG---NLKNLVQLDLSENHFSI----E 435 (513)
Q Consensus 363 ~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~---~l~~L~~L~l~~n~~~~----~ 435 (513)
.+..+++|++|++++|.+. .+|..++...+.+++|++++|++++..+..+. ..+.++.++++++.+.+ .
T Consensus 193 ---~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~ 268 (353)
T 2z80_A 193 ---SLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268 (353)
T ss_dssp ---TTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHH
T ss_pred ---HHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhh
Confidence 3455688999999999986 77777777677779999999999865544332 45678888888888775 3
Q ss_pred CCccccCCCCCCEEeCCCCccccccccc-ccCCCCCCEEECCCCCCCcccc
Q 041374 436 IPVSLSACTTLEYLYMEGNSVTGSIPLA-LNTLKSIKELDLSRNNLSGHIP 485 (513)
Q Consensus 436 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~p 485 (513)
+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|++.+..|
T Consensus 269 l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 6777889999999999999998 56655 5889999999999999987665
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.3e-25 Score=211.27 Aligned_cols=224 Identities=21% Similarity=0.217 Sum_probs=116.5
Q ss_pred cEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCC
Q 041374 182 ELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGK 261 (513)
Q Consensus 182 ~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 261 (513)
+.++.+++.+. .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 34555555554 555443 35677777777777755555677777777777777777766666677777777777766
Q ss_pred CC-CCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccC
Q 041374 262 NN-LGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEY 340 (513)
Q Consensus 262 n~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 340 (513)
|. +..... ..+..+++|+.|++++| .+.+..|..+..+++|++|++++
T Consensus 90 n~~l~~~~~------~~~~~l~~L~~L~l~~n-------------------------~l~~~~~~~~~~l~~L~~L~l~~ 138 (285)
T 1ozn_A 90 NAQLRSVDP------ATFHGLGRLHTLHLDRC-------------------------GLQELGPGLFRGLAALQYLYLQD 138 (285)
T ss_dssp CTTCCCCCT------TTTTTCTTCCEEECTTS-------------------------CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCccccCH------HHhcCCcCCCEEECCCC-------------------------cCCEECHhHhhCCcCCCEEECCC
Confidence 65 433211 11222233333333222 22222233344555566666666
Q ss_pred CcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCC
Q 041374 341 NQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLK 420 (513)
Q Consensus 341 n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~ 420 (513)
|.+.+..+. .+..+++|++|++++|+++ +..+..+..++
T Consensus 139 n~l~~~~~~----------------~~~~l~~L~~L~l~~n~l~-------------------------~~~~~~~~~l~ 177 (285)
T 1ozn_A 139 NALQALPDD----------------TFRDLGNLTHLFLHGNRIS-------------------------SVPERAFRGLH 177 (285)
T ss_dssp SCCCCCCTT----------------TTTTCTTCCEEECCSSCCC-------------------------EECTTTTTTCT
T ss_pred CcccccCHh----------------HhccCCCccEEECCCCccc-------------------------ccCHHHhcCcc
Confidence 655532221 1233355555555555554 33333344445
Q ss_pred CCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCC
Q 041374 421 NLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLS 481 (513)
Q Consensus 421 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 481 (513)
+|++|++++|.+.+..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.
T Consensus 178 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 5555555555555444555555555555555555555444444555555555555555544
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=4.6e-26 Score=214.41 Aligned_cols=207 Identities=21% Similarity=0.224 Sum_probs=124.9
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCc-ccccCccccCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNR-LHSRVPESLGQL 154 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~-l~~~~p~~l~~l 154 (513)
.+++.|+++++.+.+..+..+.++++|++|++++|.+++. .|..+.++++|++|++++|. +....|..+..+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l 104 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-------DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL 104 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-------CTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTC
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcccee-------CHhhcCCccCCCEEeCCCCCCccccCHHHhcCC
Confidence 3566666666666665555666666666666666666522 13355666666666666665 555445566666
Q ss_pred CCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeee
Q 041374 155 RSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLD 234 (513)
Q Consensus 155 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 234 (513)
++|++|++++|.+++..+..+.++++|++|++++|.+. .++...+..+++|++|++++|++++..+..+..+++|++|+
T Consensus 105 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 183 (285)
T 1ozn_A 105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183 (285)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEE
Confidence 66666666666666666666666666666666666666 34433333566666666666666644444466666666666
Q ss_pred CccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCC
Q 041374 235 LSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGG 296 (513)
Q Consensus 235 L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 296 (513)
+++|.+.+..+..+..+++|+.|++++|.+.+.. +..+..+++|+.|++++|.+..
T Consensus 184 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP------TEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC------HHHHTTCTTCCEEECCSSCEEC
T ss_pred CCCCcccccCHhHccCcccccEeeCCCCcCCcCC------HHHcccCcccCEEeccCCCccC
Confidence 6666666655666666666666666666665422 1334555666666666665554
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=5.4e-25 Score=221.02 Aligned_cols=228 Identities=20% Similarity=0.225 Sum_probs=141.9
Q ss_pred CCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCC
Q 041374 100 SFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNIS 179 (513)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 179 (513)
+++++|+|++|.+++. .+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.++...+..|.+++
T Consensus 75 ~~l~~L~L~~n~i~~~-------~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 147 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMI-------QADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLS 147 (452)
T ss_dssp TTCSEEECCSSCCCEE-------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCT
T ss_pred CCccEEECcCCcCceE-------CHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccC
Confidence 5778888888877732 234677778888888888888777777777888888888888887766666677777
Q ss_pred CCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCc-ccccCCCCCCeeeCccccccccccccccCCCCCcEEE
Q 041374 180 SLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLP-HSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLN 258 (513)
Q Consensus 180 ~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 258 (513)
+|++|++++|.+. .+|...+..+++|++|++++|...+.++ ..+..+++|++|++++|.+.+. | .+..+++|++|+
T Consensus 148 ~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~ 224 (452)
T 3zyi_A 148 KLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELE 224 (452)
T ss_dssp TCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEE
T ss_pred CCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEE
Confidence 7777777777776 4555444466677777776643222333 3455666666666666666532 2 345555555555
Q ss_pred cCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEec
Q 041374 259 FGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGL 338 (513)
Q Consensus 259 L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 338 (513)
+++|.+.+ ..|..+..++. ++.+++++|++.+..+..+..+++|++|++
T Consensus 225 Ls~N~l~~------------------------------~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 273 (452)
T 3zyi_A 225 MSGNHFPE------------------------------IRPGSFHGLSS-LKKLWVMNSQVSLIERNAFDGLASLVELNL 273 (452)
T ss_dssp CTTSCCSE------------------------------ECGGGGTTCTT-CCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CcCCcCcc------------------------------cCcccccCccC-CCEEEeCCCcCceECHHHhcCCCCCCEEEC
Confidence 55555544 44444444443 555555555555555555666666666777
Q ss_pred cCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCc
Q 041374 339 EYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLT 384 (513)
Q Consensus 339 ~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~ 384 (513)
++|++++..+.. +..+++|+.|++++|.+.
T Consensus 274 ~~N~l~~~~~~~----------------~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 274 AHNNLSSLPHDL----------------FTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CSSCCSCCCTTS----------------STTCTTCCEEECCSSCEE
T ss_pred CCCcCCccChHH----------------hccccCCCEEEccCCCcC
Confidence 666666332222 233456666666666554
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=7.7e-25 Score=219.12 Aligned_cols=205 Identities=19% Similarity=0.243 Sum_probs=134.6
Q ss_pred CCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCC
Q 041374 100 SFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNIS 179 (513)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 179 (513)
+++++|+|++|++++.. +..|.++++|++|++++|.+.+..+..|.++++|++|++++|.++...+..|..++
T Consensus 64 ~~l~~L~L~~n~i~~~~-------~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 136 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIK-------VNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLS 136 (440)
T ss_dssp TTCSEEECCSCCCCEEC-------TTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCS
T ss_pred CCCcEEEccCCcCCeeC-------HHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccc
Confidence 67888888888877322 34677788888888888888877777788888888888888888877666777777
Q ss_pred CCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCc-ccccCCCCCCeeeCccccccccccccccCCCCCcEEE
Q 041374 180 SLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLP-HSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLN 258 (513)
Q Consensus 180 ~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 258 (513)
+|+.|++++|.+. .++...+..+++|++|++++|...+.++ ..+.++++|++|++++|.+.. +| .+..+++|++|+
T Consensus 137 ~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~ 213 (440)
T 3zyj_A 137 KLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELD 213 (440)
T ss_dssp SCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEE
T ss_pred cCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEE
Confidence 7777777777777 4555444467777777777744332333 356667777777777777662 23 356666666666
Q ss_pred cCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEec
Q 041374 259 FGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGL 338 (513)
Q Consensus 259 L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 338 (513)
+++|.+++... ..+..+++|+.|++++|.+ .+..+..+..+++|++|++
T Consensus 214 Ls~N~l~~~~~------~~~~~l~~L~~L~L~~n~l-------------------------~~~~~~~~~~l~~L~~L~L 262 (440)
T 3zyj_A 214 LSGNHLSAIRP------GSFQGLMHLQKLWMIQSQI-------------------------QVIERNAFDNLQSLVEINL 262 (440)
T ss_dssp CTTSCCCEECT------TTTTTCTTCCEEECTTCCC-------------------------CEECTTSSTTCTTCCEEEC
T ss_pred CCCCccCccCh------hhhccCccCCEEECCCCce-------------------------eEEChhhhcCCCCCCEEEC
Confidence 66666654322 2344445555555555544 4444455555666666666
Q ss_pred cCCcCcc
Q 041374 339 EYNQLTG 345 (513)
Q Consensus 339 ~~n~~~~ 345 (513)
++|++++
T Consensus 263 ~~N~l~~ 269 (440)
T 3zyj_A 263 AHNNLTL 269 (440)
T ss_dssp TTSCCCC
T ss_pred CCCCCCc
Confidence 6666653
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=2.5e-27 Score=225.89 Aligned_cols=268 Identities=15% Similarity=0.201 Sum_probs=164.4
Q ss_pred CCCCCCCCCCCcccceeeCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccC-----
Q 041374 54 TKSWNNSISLCQWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIG----- 128 (513)
Q Consensus 54 ~~~w~~~~~~c~~~~v~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~----- 128 (513)
...|.....|+.+..+.......+++.+++++|.+ .+|..+... |++|++++|.+... .+|..+.
T Consensus 21 ~~~~~~~~~c~~~~~~~~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~------~~~~~~~~~~~~ 90 (312)
T 1wwl_A 21 KPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAA------RIPSRILFGALR 90 (312)
T ss_dssp SCCGGGGGGSSSCSEEEEEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEE------ECBHHHHHHHHH
T ss_pred ccchHHHhhhhccccEEEEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCC------CcCHHHHHHHHH
Confidence 34565444455554443322224566677777777 455545443 77778888877421 2344443
Q ss_pred --CCCCCCEEEeecCcccccCcccc--CCCCCCCEEEcccccCCccCcccccCC-----CCCcEEeCCCCcCcccCCccc
Q 041374 129 --NLSALQNIDIAGNRLHSRVPESL--GQLRSLSFLDISENAFSGMFHSSIFNI-----SSLELIYPLENRLEGSLPVNI 199 (513)
Q Consensus 129 --~l~~L~~L~l~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~i~~~~~~~~~~l-----~~L~~L~l~~n~l~~~lp~~~ 199 (513)
++++|++|++++|.+++.+|..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|++.+..|..+
T Consensus 91 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~ 169 (312)
T 1wwl_A 91 VLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV 169 (312)
T ss_dssp HHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC
T ss_pred hcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh
Confidence 67888888888888887777765 7788888888888888877 6666665 778888888887774444444
Q ss_pred cCCCCCCCEEEccCCccccc--Ccccc--cCCCCCCeeeCccccccc---cccccccCCCCCcEEEcCCCCCCCCCCCCc
Q 041374 200 GFSLPNLEDLSVRQNNYTGS--LPHSL--SNASNLQLLDLSLNHFSG---QVKIDFNRLPNLFRLNFGKNNLGTGAIGDL 272 (513)
Q Consensus 200 ~~~l~~L~~L~l~~n~l~~~--~~~~l--~~l~~L~~L~L~~n~~~~---~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~ 272 (513)
. .+++|++|++++|++.+. .+..+ ..+++|++|++++|.+.+ .....+..+++|++|++++|.+.+..+
T Consensus 170 ~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--- 245 (312)
T 1wwl_A 170 R-VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG--- 245 (312)
T ss_dssp C-CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC---
T ss_pred c-cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc---
Confidence 4 677788888887776643 23333 677777777777777762 122334566777777777777766331
Q ss_pred hhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCc
Q 041374 273 DFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLT 344 (513)
Q Consensus 273 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 344 (513)
...+..+++|+.|++++|.+. .+|..+. ..++.+++++|++++. |. +..+++|++|++++|+++
T Consensus 246 --~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~---~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 246 --APSCDWPSQLNSLNLSFTGLK-QVPKGLP---AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp --CSCCCCCTTCCEEECTTSCCS-SCCSSCC---SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred --hhhhhhcCCCCEEECCCCccC-hhhhhcc---CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 022334566666666666665 3343332 2255555555555443 33 445555555555555544
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=2.7e-26 Score=218.71 Aligned_cols=252 Identities=19% Similarity=0.166 Sum_probs=132.6
Q ss_pred ccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCccc-ccCccccc-------CCCCCCeeeCccccccccccc
Q 041374 175 IFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYT-GSLPHSLS-------NASNLQLLDLSLNHFSGQVKI 246 (513)
Q Consensus 175 ~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~-------~l~~L~~L~L~~n~~~~~~~~ 246 (513)
++..++|+.+++++|.+ .+|..+.. .|++|++++|.++ ..+|..+. ++++|++|++++|.+.+..|.
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 33445666666666666 55655441 2666666666663 34444443 566666666666666655555
Q ss_pred cc--cCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccc----cccceEEeccccce
Q 041374 247 DF--NRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLS----STIILFTMGLNQIY 320 (513)
Q Consensus 247 ~~--~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~----~~l~~l~l~~~~~~ 320 (513)
.+ ..+++|++|++++|.+++ . |..+..+. ..++.+++++|++.
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~------------------------------~-~~~~~~l~~~~~~~L~~L~L~~N~l~ 162 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWAT------------------------------R-DAWLAELQQWLKPGLKVLSIAQAHSL 162 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSS------------------------------S-SSHHHHHHTTCCTTCCEEEEESCSCC
T ss_pred HHHHhcCCCccEEEccCCCCcc------------------------------h-hHHHHHHHHhhcCCCcEEEeeCCCCc
Confidence 44 555566666655555544 3 33333331 22556666666665
Q ss_pred ecCCccccCCCCCCEEeccCCcCccCC--CccccCCCCeEEeccCCccccCCCCCCEEecccCcCcc--cChHHHHhhhc
Q 041374 321 GTIPPEVKNLVNLNGFGLEYNQLTGPI--PHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTG--ALPPQILGILT 396 (513)
Q Consensus 321 ~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~--~~p~~~~~~~~ 396 (513)
+..|..+..+++|++|++++|++.+.. +..+ .+..+++|++|++++|++.+ .++..++...+
T Consensus 163 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~ 228 (312)
T 1wwl_A 163 NFSCEQVRVFPALSTLDLSDNPELGERGLISAL--------------CPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228 (312)
T ss_dssp CCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS--------------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred cchHHHhccCCCCCEEECCCCCcCcchHHHHHH--------------HhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence 555566666777777777777665431 1110 01345667777777776652 22333333333
Q ss_pred ccceEEccCCcCcccCC-ccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEEC
Q 041374 397 LSILLDLSGNLLTGSIP-TEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDL 475 (513)
Q Consensus 397 ~l~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 475 (513)
.|++|++++|++++..| ..+..+++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|++|++
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L 303 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSL 303 (312)
T ss_dssp CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEEC
T ss_pred CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEec
Confidence 44555555555554332 23334455555555555554 4444433 4455555555555433 33 444555555555
Q ss_pred CCCCCC
Q 041374 476 SRNNLS 481 (513)
Q Consensus 476 ~~n~l~ 481 (513)
++|+++
T Consensus 304 ~~N~l~ 309 (312)
T 1wwl_A 304 KGNPFL 309 (312)
T ss_dssp TTCTTT
T ss_pred cCCCCC
Confidence 555544
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=4.7e-24 Score=198.81 Aligned_cols=219 Identities=20% Similarity=0.260 Sum_probs=182.1
Q ss_pred CCCCcccceeeCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCC-cccCCCCCCCEEEee
Q 041374 61 ISLCQWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLP-PSIGNLSALQNIDIA 139 (513)
Q Consensus 61 ~~~c~~~~v~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~~~~~l~~L~~L~l~ 139 (513)
.++|.|.|+.|.-. ..++.++++++++.. +|..+. +++++|++++|+++ .++ ..|.++++|++|+++
T Consensus 2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~--------~~~~~~~~~l~~L~~L~l~ 69 (270)
T 2o6q_A 2 EALCKKDGGVCSCN-NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLS--------SLPSKAFHRLTKLRLLYLN 69 (270)
T ss_dssp CCCBGGGTCSBEEE-TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCS--------CCCTTSSSSCTTCCEEECC
T ss_pred CccCCCCCCCCEeC-CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCC--------eeCHHHhcCCCCCCEEECC
Confidence 47899999988532 356789999998886 454443 68999999999987 333 378899999999999
Q ss_pred cCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCccccc
Q 041374 140 GNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGS 219 (513)
Q Consensus 140 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~ 219 (513)
+|.++...+..|..+++|++|++++|.++...+..+.++++|++|++++|.+. .++...+..+++|++|++++|.+++.
T Consensus 70 ~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~ 148 (270)
T 2o6q_A 70 DNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSL 148 (270)
T ss_dssp SSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCCCEEECCCCcCCcc
Confidence 99999866667789999999999999999888888899999999999999998 55555444899999999999999966
Q ss_pred CcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcC
Q 041374 220 LPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVL 298 (513)
Q Consensus 220 ~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 298 (513)
.+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.++.... ..+..+++|+.|++++|.+....
T Consensus 149 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE------GAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT------TTTTTCTTCCEEECCSSCBCCSS
T ss_pred CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCH------HHhccccCCCEEEecCCCeeCCC
Confidence 56668899999999999999998777778999999999999999886443 34567888999999999876543
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=7.5e-26 Score=216.12 Aligned_cols=259 Identities=19% Similarity=0.175 Sum_probs=179.2
Q ss_pred cEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCC
Q 041374 77 RVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRS 156 (513)
Q Consensus 77 ~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 156 (513)
.....+++.+.+...+...+..+++|++|++++|.+++ ..|..+.++++|++|++++|.+++..+ +..+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~-------~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~ 81 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-------ISAADLAPFTKLELLNLSSNVLYETLD--LESLST 81 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCC-------CCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTT
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCc-------CCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCC
Confidence 45666777777766666666778899999999998873 223578889999999999999887544 888999
Q ss_pred CCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCc
Q 041374 157 LSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLS 236 (513)
Q Consensus 157 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 236 (513)
|++|++++|.+++.. ..++|+.|++++|.+.+ ++.. .+++|++|++++|++++..+..+..+++|++|+++
T Consensus 82 L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~-~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls 152 (317)
T 3o53_A 82 LRTLDLNNNYVQELL-----VGPSIETLHAANNNISR-VSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152 (317)
T ss_dssp CCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSE-EEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECT
T ss_pred CCEEECcCCcccccc-----CCCCcCEEECCCCccCC-cCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECC
Confidence 999999999887543 34788889998888874 3332 35778888888888887666678888888888888
Q ss_pred cccccccccccc-cCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEec
Q 041374 237 LNHFSGQVKIDF-NRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMG 315 (513)
Q Consensus 237 ~n~~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~ 315 (513)
+|.+.+..+..+ ..+++|++|++++|.++... ....+++|+.|++++|.+.+.
T Consensus 153 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--------~~~~l~~L~~L~Ls~N~l~~l------------------ 206 (317)
T 3o53_A 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--------GQVVFAKLKTLDLSSNKLAFM------------------ 206 (317)
T ss_dssp TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--------CCCCCTTCCEEECCSSCCCEE------------------
T ss_pred CCCCCcccHHHHhhccCcCCEEECCCCcCcccc--------cccccccCCEEECCCCcCCcc------------------
Confidence 888887666665 36788888888888776531 122345555555555544422
Q ss_pred cccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCc-ccChHHHHhh
Q 041374 316 LNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLT-GALPPQILGI 394 (513)
Q Consensus 316 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~-~~~p~~~~~~ 394 (513)
|..+..+++|++|++++|.+++ + |..+..+++|+.|++++|.+. +.+|..+...
T Consensus 207 --------~~~~~~l~~L~~L~L~~N~l~~-l----------------~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~ 261 (317)
T 3o53_A 207 --------GPEFQSAAGVTWISLRNNKLVL-I----------------EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261 (317)
T ss_dssp --------CGGGGGGTTCSEEECTTSCCCE-E----------------CTTCCCCTTCCEEECTTCCCBHHHHHHHHHTC
T ss_pred --------hhhhcccCcccEEECcCCcccc-h----------------hhHhhcCCCCCEEEccCCCccCcCHHHHHhcc
Confidence 2235556677777777777762 2 233445567777777777776 4444444333
Q ss_pred hcccceEEccC
Q 041374 395 LTLSILLDLSG 405 (513)
Q Consensus 395 ~~~l~~L~l~~ 405 (513)
. .++.+++++
T Consensus 262 ~-~L~~l~l~~ 271 (317)
T 3o53_A 262 Q-RVQTVAKQT 271 (317)
T ss_dssp H-HHHHHHHHH
T ss_pred c-cceEEECCC
Confidence 3 336666663
No 70
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=1.3e-27 Score=249.05 Aligned_cols=407 Identities=14% Similarity=0.098 Sum_probs=210.2
Q ss_pred cccCCCCCCEEeCCCCCCcccCC---CCCCC-----CCcccCCCCCCCEEEeecCcccccCccccC-CCCCCCEEEcccc
Q 041374 95 YVGNLSFLRFVNLASNNLHGEIP---YEHGQ-----LPPSIGNLSALQNIDIAGNRLHSRVPESLG-QLRSLSFLDISEN 165 (513)
Q Consensus 95 ~l~~l~~L~~L~L~~n~l~~~~~---~~~~~-----l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~L~Ls~n 165 (513)
.+.++++|++|+++++....... ...+. ++.....+++|++|++++|.+++..+..+. .+++|++|++++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 45566677777776654322111 00000 001123456777777777766654444443 4667777777776
Q ss_pred -cCCcc-CcccccCCCCCcEEeCCCCcCcccCCcc---ccCCCCCCCEEEccCCc--ccc-cCcccccCCCCCCeeeCcc
Q 041374 166 -AFSGM-FHSSIFNISSLELIYPLENRLEGSLPVN---IGFSLPNLEDLSVRQNN--YTG-SLPHSLSNASNLQLLDLSL 237 (513)
Q Consensus 166 -~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~lp~~---~~~~l~~L~~L~l~~n~--l~~-~~~~~l~~l~~L~~L~L~~ 237 (513)
.++.. ++..+.++++|++|++++|.+.+..+.. +...+++|++|++++|. +.. .++..+..+++|++|++++
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence 33322 2333346677777777777655322221 12245577777777665 211 1112223457777777777
Q ss_pred ccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccc-cccccccCCcCchhhhccccccceEEecc
Q 041374 238 NHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAF-GLDTNIFGGVLPLSIANLSSTIILFTMGL 316 (513)
Q Consensus 238 n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L-~l~~n~~~~~~~~~~~~~~~~l~~l~l~~ 316 (513)
|...+.++..+..+++|++|+++.+...-.....-..+..+.++++|+.+ .+.... .+.++..+..++. ++.+++++
T Consensus 221 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~-L~~L~L~~ 298 (594)
T 2p1m_B 221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV-PAYLPAVYSVCSR-LTTLNLSY 298 (594)
T ss_dssp TSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCC-GGGGGGGHHHHTT-CCEEECTT
T ss_pred CCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccc-hhhHHHHHHhhCC-CCEEEccC
Confidence 63222355556666777777765443110000000112234455555555 222211 1122222223333 56666665
Q ss_pred ccceecC-CccccCCCCCCEEeccCCcCccCCC----ccccCCCCeEEecc----------CC----ccc-cCCCCCCEE
Q 041374 317 NQIYGTI-PPEVKNLVNLNGFGLEYNQLTGPIP----HAIGELRNLQLRGN----------VP----SSL-GNCQNLMLL 376 (513)
Q Consensus 317 ~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~----~~~~~l~~L~l~~~----------~~----~~l-~~~~~L~~L 376 (513)
|.+.+.. ...+..+++|++|++++| +.+... ..+.+++.|++.+. +. ..+ ..+++|++|
T Consensus 299 ~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L 377 (594)
T 2p1m_B 299 ATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV 377 (594)
T ss_dssp CCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEE
T ss_pred CCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHH
Confidence 5544321 122345566666666655 221111 12344555555321 10 111 236777777
Q ss_pred ecccCcCcccChHHHHhhhcccceEEcc--C----CcCccc-----CCccccCCCCCCEEeCCCCccCccCCccccC-CC
Q 041374 377 SVSNNKLTGALPPQILGILTLSILLDLS--G----NLLTGS-----IPTEVGNLKNLVQLDLSENHFSIEIPVSLSA-CT 444 (513)
Q Consensus 377 ~ls~n~l~~~~p~~~~~~~~~l~~L~l~--~----n~l~~~-----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-l~ 444 (513)
.++.+.+++..+..+....+.|+.|+++ + +.+++. ++..+..+++|+.|++++ .+++..+..+.. ++
T Consensus 378 ~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~ 456 (594)
T 2p1m_B 378 LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAK 456 (594)
T ss_dssp EEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCT
T ss_pred HHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhch
Confidence 7777777655555555444556777777 3 344421 112245567777777766 555444444443 67
Q ss_pred CCCEEeCCCCcccccccccc-cCCCCCCEEECCCCCCCcccch-hhhcccCc-eEEccCCcccc
Q 041374 445 TLEYLYMEGNSVTGSIPLAL-NTLKSIKELDLSRNNLSGHIPE-FLENLSFN-KMNETINDFCH 505 (513)
Q Consensus 445 ~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~p~-~l~~l~~l-~l~l~~n~l~~ 505 (513)
+|++|++++|.+++..+..+ ..+++|+.|++++|++++..+. ....++.| ++++++|+++.
T Consensus 457 ~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 457 KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 77777777777765555444 5577777777777777544443 34456777 77777777643
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.1e-24 Score=220.02 Aligned_cols=235 Identities=17% Similarity=0.191 Sum_probs=165.1
Q ss_pred CCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcc
Q 041374 204 PNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSK 283 (513)
Q Consensus 204 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~ 283 (513)
++|++|++++|.+++..|..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. ...++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-----------~~~~~ 100 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----------LVGPS 100 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-----------EECTT
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-----------CCCCC
Confidence 356666666666665555666666666666666666665443 66666666666666655431 11244
Q ss_pred cccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccC
Q 041374 284 LEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNV 363 (513)
Q Consensus 284 L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~ 363 (513)
|+.|++++|.+.+. .+. .+++|++|++++|.+++..|..
T Consensus 101 L~~L~L~~N~l~~~-------------------------~~~---~l~~L~~L~L~~N~l~~~~~~~------------- 139 (487)
T 3oja_A 101 IETLHAANNNISRV-------------------------SCS---RGQGKKNIYLANNKITMLRDLD------------- 139 (487)
T ss_dssp CCEEECCSSCCCCE-------------------------EEC---CCSSCEEEECCSSCCCSGGGBC-------------
T ss_pred cCEEECcCCcCCCC-------------------------Ccc---ccCCCCEEECCCCCCCCCCchh-------------
Confidence 55555555444322 221 2456788888888877644433
Q ss_pred CccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCC
Q 041374 364 PSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSAC 443 (513)
Q Consensus 364 ~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l 443 (513)
+..+++|+.|++++|.+.+..|..+....+.|+.|++++|.+++.. ....+++|+.|++++|.+++ +|..+..+
T Consensus 140 ---~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l 213 (487)
T 3oja_A 140 ---EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAF-MGPEFQSA 213 (487)
T ss_dssp ---GGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCE-ECGGGGGG
T ss_pred ---hcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCC-CCHhHcCC
Confidence 3445778888888888887777766655566688888888887552 23458899999999999985 55558889
Q ss_pred CCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCC-cccchhhhcccCc-eEEcc
Q 041374 444 TTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLS-GHIPEFLENLSFN-KMNET 499 (513)
Q Consensus 444 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~p~~l~~l~~l-~l~l~ 499 (513)
++|+.|++++|.++ .+|..+..+++|+.|++++|++. +.+|.++..++.+ .++++
T Consensus 214 ~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 214 AGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 99999999999998 47888888999999999999987 7788888888888 77775
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=5.9e-27 Score=244.17 Aligned_cols=408 Identities=15% Similarity=0.095 Sum_probs=226.8
Q ss_pred CcEEEEEcCCCCCcccc---------------CccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccC-CCCCCCEEEee
Q 041374 76 RRVTKLVLRNQSIGGFL---------------SPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIG-NLSALQNIDIA 139 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~---------------~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~-~l~~L~~L~l~ 139 (513)
.+++.++++++...... ......+++|++|++++|.+++.. +..+. .+++|++|+++
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~-------~~~l~~~~~~L~~L~L~ 138 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDC-------LELIAKSFKNFKVLVLS 138 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHH-------HHHHHHHCTTCCEEEEE
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHH-------HHHHHHhCCCCcEEeCC
Confidence 56777777775432111 112346778888888888766432 22333 57788888888
Q ss_pred cC-ccccc-CccccCCCCCCCEEEcccccCCccCccccc----CCCCCcEEeCCCCc--CcccCCccccCCCCCCCEEEc
Q 041374 140 GN-RLHSR-VPESLGQLRSLSFLDISENAFSGMFHSSIF----NISSLELIYPLENR--LEGSLPVNIGFSLPNLEDLSV 211 (513)
Q Consensus 140 ~n-~l~~~-~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~----~l~~L~~L~l~~n~--l~~~lp~~~~~~l~~L~~L~l 211 (513)
+| .++.. ++..+..+++|++|++++|.+++..+..+. .+++|+.|++++|. +.......+...+++|++|++
T Consensus 139 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L 218 (594)
T 2p1m_B 139 SCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL 218 (594)
T ss_dssp SCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEEC
T ss_pred CcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEec
Confidence 87 34322 333444678888888888887665444333 56688888888776 211111111124578888888
Q ss_pred cCCcccccCcccccCCCCCCeeeCcccc-------ccccccccccCCCCCcEEE-cCCCCCCCCCCCCchhhcccCCCcc
Q 041374 212 RQNNYTGSLPHSLSNASNLQLLDLSLNH-------FSGQVKIDFNRLPNLFRLN-FGKNNLGTGAIGDLDFIAHLTNCSK 283 (513)
Q Consensus 212 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~-------~~~~~~~~~~~l~~L~~L~-L~~n~~~~~~~~~~~~~~~l~~~~~ 283 (513)
++|...+.++..+..+++|++|++..+. +.+ .+..+.++++|+.+. +.+... -.++..+..+++
T Consensus 219 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-------~~l~~~~~~~~~ 290 (594)
T 2p1m_B 219 NRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-------AYLPAVYSVCSR 290 (594)
T ss_dssp CTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-------GGGGGGHHHHTT
T ss_pred CCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-------hhHHHHHHhhCC
Confidence 8873222366667777788888754432 222 223455566666652 221110 011222234556
Q ss_pred cccccccccccCCcCchh-hhccccccceEEeccccceecCCccccCCCCCCEEeccC---------CcCccCCC----c
Q 041374 284 LEAFGLDTNIFGGVLPLS-IANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEY---------NQLTGPIP----H 349 (513)
Q Consensus 284 L~~L~l~~n~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~---------n~~~~~~~----~ 349 (513)
|+.|++++|.+.+..... +..++. ++.+++..+-....++.....+++|++|++.+ +.+++... .
T Consensus 291 L~~L~L~~~~l~~~~l~~~~~~~~~-L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~ 369 (594)
T 2p1m_B 291 LTTLNLSYATVQSYDLVKLLCQCPK-LQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSM 369 (594)
T ss_dssp CCEEECTTCCCCHHHHHHHHTTCTT-CCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHH
T ss_pred CCEEEccCCCCCHHHHHHHHhcCCC-cCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHH
Confidence 666666666544332222 223333 66666665511111222223356666666632 23332111 1
Q ss_pred cccCCCCeEEeccCC-----ccc-cCCCCCCEEecc--c----CcCcccCh-----HHHHhhhcccceEEccCCcCcccC
Q 041374 350 AIGELRNLQLRGNVP-----SSL-GNCQNLMLLSVS--N----NKLTGALP-----PQILGILTLSILLDLSGNLLTGSI 412 (513)
Q Consensus 350 ~~~~l~~L~l~~~~~-----~~l-~~~~~L~~L~ls--~----n~l~~~~p-----~~~~~~~~~l~~L~l~~n~l~~~~ 412 (513)
...+++.|.+.++-. ..+ ..+++|+.|+++ + +.++ ..| ..+....+.|+.|++++ .+++..
T Consensus 370 ~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~ 447 (594)
T 2p1m_B 370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT-LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKV 447 (594)
T ss_dssp HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT-CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHH
T ss_pred hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc-CCchhhHHHHHHhhCCCccEEeecC-cccHHH
Confidence 234455554433211 122 247788888888 3 3444 221 11233344568888877 666555
Q ss_pred CccccC-CCCCCEEeCCCCccCccCCccc-cCCCCCCEEeCCCCcccccccc-cccCCCCCCEEECCCCCCCcccchhh-
Q 041374 413 PTEVGN-LKNLVQLDLSENHFSIEIPVSL-SACTTLEYLYMEGNSVTGSIPL-ALNTLKSIKELDLSRNNLSGHIPEFL- 488 (513)
Q Consensus 413 ~~~~~~-l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~l- 488 (513)
+..+.. +++|++|++++|.+++..+..+ ..+++|++|+|++|.+++..+. .+..+++|+.|++++|+++......+
T Consensus 448 ~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 527 (594)
T 2p1m_B 448 FEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLG 527 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHH
T ss_pred HHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHH
Confidence 555544 7888888888888876555554 5688888888888888654443 34557888888888888865444444
Q ss_pred hcccCc-eEEccCC
Q 041374 489 ENLSFN-KMNETIN 501 (513)
Q Consensus 489 ~~l~~l-~l~l~~n 501 (513)
..++.+ ...+..+
T Consensus 528 ~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 528 QKMPKLNVEVIDER 541 (594)
T ss_dssp HHCTTEEEEEECSS
T ss_pred HhCCCCEEEEecCC
Confidence 456666 3334433
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=3.8e-24 Score=216.04 Aligned_cols=222 Identities=18% Similarity=0.187 Sum_probs=173.2
Q ss_pred ccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcc
Q 041374 94 PYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHS 173 (513)
Q Consensus 94 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~ 173 (513)
.....+++|++|+|++|.+++. .|..|..+++|++|++++|.+++..| +..+++|++|++++|.+++..+
T Consensus 28 ~l~~~~~~L~~L~Ls~n~l~~~-------~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~- 97 (487)
T 3oja_A 28 SLRQSAWNVKELDLSGNPLSQI-------SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV- 97 (487)
T ss_dssp TTSTTGGGCCEEECCSSCCCCC-------CGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-
T ss_pred HhcccCCCccEEEeeCCcCCCC-------CHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-
Confidence 3334556899999999988732 24578888999999999999887555 8888999999999998875532
Q ss_pred cccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCcccccccccccccc-CCC
Q 041374 174 SIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFN-RLP 252 (513)
Q Consensus 174 ~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~-~l~ 252 (513)
.++|+.|++++|.+.+ ++.. .+++|++|++++|.+++..|..++.+++|++|++++|.+.+..|..+. .++
T Consensus 98 ----~~~L~~L~L~~N~l~~-~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~ 169 (487)
T 3oja_A 98 ----GPSIETLHAANNNISR-VSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169 (487)
T ss_dssp ----CTTCCEEECCSSCCCC-EEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTT
T ss_pred ----CCCcCEEECcCCcCCC-CCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCC
Confidence 3889999999998884 3332 467899999999999987788888899999999999999887777775 789
Q ss_pred CCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCC
Q 041374 253 NLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVN 332 (513)
Q Consensus 253 ~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~ 332 (513)
+|+.|++++|.+++. .....+++|+.|++++|.+.+..+. +..++. ++.+++++|.+.+ +|..+..+++
T Consensus 170 ~L~~L~Ls~N~l~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~-L~~L~Ls~N~l~~-lp~~l~~l~~ 238 (487)
T 3oja_A 170 TLEHLNLQYNFIYDV--------KGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAG-VTWISLRNNKLVL-IEKALRFSQN 238 (487)
T ss_dssp TCCEEECTTSCCCEE--------ECCCCCTTCCEEECCSSCCCEECGG-GGGGTT-CSEEECTTSCCCE-ECTTCCCCTT
T ss_pred cccEEecCCCccccc--------cccccCCCCCEEECCCCCCCCCCHh-HcCCCC-ccEEEecCCcCcc-cchhhccCCC
Confidence 999999999988764 2233578888888888888875554 666655 7788888887775 5666777778
Q ss_pred CCEEeccCCcCc
Q 041374 333 LNGFGLEYNQLT 344 (513)
Q Consensus 333 L~~L~l~~n~~~ 344 (513)
|+.+++++|.+.
T Consensus 239 L~~L~l~~N~l~ 250 (487)
T 3oja_A 239 LEHFDLRGNGFH 250 (487)
T ss_dssp CCEEECTTCCBC
T ss_pred CCEEEcCCCCCc
Confidence 888888888776
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.4e-22 Score=188.84 Aligned_cols=206 Identities=21% Similarity=0.281 Sum_probs=178.0
Q ss_pred CCCCCCCCCCC--cccceeeCCC---------CCcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCC
Q 041374 54 TKSWNNSISLC--QWTGVTCGHR---------HRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQ 122 (513)
Q Consensus 54 ~~~w~~~~~~c--~~~~v~c~~~---------~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 122 (513)
...|.+..+.| .+..+.|... ...++.|+++++.+.+..+..+.++++|++|++++|.++ .
T Consensus 4 ~C~~~~~~C~c~~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--------~ 75 (270)
T 2o6q_A 4 LCKKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ--------T 75 (270)
T ss_dssp CBGGGTCSBEEETTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS--------C
T ss_pred cCCCCCCCCEeCCCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC--------e
Confidence 44576665556 4677888642 246899999999999887789999999999999999987 3
Q ss_pred CCc-ccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccC
Q 041374 123 LPP-SIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGF 201 (513)
Q Consensus 123 l~~-~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~ 201 (513)
++. .|.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+. .+|...+.
T Consensus 76 i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~ 154 (270)
T 2o6q_A 76 LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFD 154 (270)
T ss_dssp CCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred eChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHcc
Confidence 443 4688999999999999999877778899999999999999999998899999999999999999999 67766555
Q ss_pred CCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCC
Q 041374 202 SLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGA 268 (513)
Q Consensus 202 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 268 (513)
.+++|++|++++|++++..+..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+....
T Consensus 155 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 8999999999999999766667899999999999999999777777899999999999999987654
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=6.1e-23 Score=191.41 Aligned_cols=207 Identities=21% Similarity=0.301 Sum_probs=174.5
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 155 (513)
.+++.|+++++.+... ..+..+++|++|++++|.+++ + +.+..+++|++|++++|.+++..+..+..++
T Consensus 41 ~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~--------~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 109 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD--------I-SALKELTNLTYLILTGNQLQSLPNGVFDKLT 109 (272)
T ss_dssp TTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC--------C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred cceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC--------c-hhhcCCCCCCEEECCCCccCccChhHhcCCc
Confidence 5688999999887753 357889999999999998872 2 3688899999999999999987777789999
Q ss_pred CCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeC
Q 041374 156 SLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDL 235 (513)
Q Consensus 156 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 235 (513)
+|++|++++|.+++..+..+.++++|++|++++|.+. .+|...+..+++|++|++++|++++..+..+..+++|++|++
T Consensus 110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 188 (272)
T 3rfs_A 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEEC
Confidence 9999999999999888888899999999999999998 566555447899999999999999776667788999999999
Q ss_pred ccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhcccc
Q 041374 236 SLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSS 307 (513)
Q Consensus 236 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 307 (513)
++|.+.+..+..+..+++|++|++++|.+.+ .+++++.++++.|.+.|.+|.+++.+..
T Consensus 189 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------------~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 189 YQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------------TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------------CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CCCcCCccCHHHHhCCcCCCEEEccCCCccc-------------cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 9999998777778999999999999997654 3567888888888888888887766543
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=1.7e-22 Score=189.08 Aligned_cols=207 Identities=21% Similarity=0.190 Sum_probs=129.9
Q ss_pred cEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCC
Q 041374 77 RVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRS 156 (513)
Q Consensus 77 ~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 156 (513)
.++.|++++|.+.+..+..+.++++|++|++++|.+++. .+..+.++++|++|++++|.+.+..+..|.++++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-------EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE-------CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc-------CHHHccCCcCCCEEECCCCccCccChhhhcCCcc
Confidence 567777777777666665667777777777777766522 1224666677777777777776666666777777
Q ss_pred CCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcc-cCCccccCCCCCCCEEEccCCcccccCcccccCCCCCC----
Q 041374 157 LSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEG-SLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQ---- 231 (513)
Q Consensus 157 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~---- 231 (513)
|++|++++|.+++..+..+..+++|++|++++|.+.+ .+|..+. .+++|++|++++|++++..+..+..+++|+
T Consensus 102 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l 180 (276)
T 2z62_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180 (276)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG-GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCE
T ss_pred ccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhc-cCCCCCEEECCCCCCCcCCHHHhhhhhhccccce
Confidence 7777777777766666566677777777777776663 2455554 566777777777776655555555555554
Q ss_pred eeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcC
Q 041374 232 LLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVL 298 (513)
Q Consensus 232 ~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 298 (513)
.|++++|.+.+..+..+. ..+|++|++++|.++.... ..+..+++|+.|++++|.+.+..
T Consensus 181 ~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 181 SLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPD------GIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp EEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCT------TTTTTCCSCCEEECCSSCBCCCT
T ss_pred eeecCCCcccccCccccC-CCcccEEECCCCceeecCH------hHhcccccccEEEccCCcccccC
Confidence 666777766644443333 3367777777776654322 22455666666666666666544
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=2.7e-22 Score=187.68 Aligned_cols=158 Identities=25% Similarity=0.281 Sum_probs=107.7
Q ss_pred CCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCC
Q 041374 100 SFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNIS 179 (513)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 179 (513)
++|++|++++|.+++.. +..+.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+.+++
T Consensus 28 ~~l~~L~ls~n~l~~~~-------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLG-------SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (276)
T ss_dssp TTCCEEECTTCCCCEEC-------TTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred CCccEEECCCCcccccC-------HhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCc
Confidence 46888888888877321 22567778888888888888776666778888888888888888777777777777
Q ss_pred CCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccc-cCcccccCCCCCCeeeCccccccccccccccCCCCCc---
Q 041374 180 SLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTG-SLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLF--- 255 (513)
Q Consensus 180 ~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~--- 255 (513)
+|++|++++|.+.+..+..+. .+++|++|++++|.+++ .+|..+..+++|++|++++|++++..+..+..+++|+
T Consensus 101 ~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~ 179 (276)
T 2z62_A 101 SLQKLVAVETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179 (276)
T ss_dssp TCCEEECTTSCCCCSTTCCCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred cccEEECCCCCccccCchhcc-cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccc
Confidence 777777777777733232333 67777777777777764 2466677777777777777777655555554444443
Q ss_pred -EEEcCCCCCC
Q 041374 256 -RLNFGKNNLG 265 (513)
Q Consensus 256 -~L~L~~n~~~ 265 (513)
.|++++|.+.
T Consensus 180 l~L~ls~n~l~ 190 (276)
T 2z62_A 180 LSLDLSLNPMN 190 (276)
T ss_dssp EEEECCSSCCC
T ss_pred eeeecCCCccc
Confidence 5555555444
No 78
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=5.3e-22 Score=182.75 Aligned_cols=192 Identities=20% Similarity=0.272 Sum_probs=162.5
Q ss_pred CCCcccceeeCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecC
Q 041374 62 SLCQWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGN 141 (513)
Q Consensus 62 ~~c~~~~v~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n 141 (513)
.|+.|.|..|.. ..+.++++++.+.. +|..+. +++++|++++|.+++. .+..+.++++|++|++++|
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~L~~n 69 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATL-------SDATFRGLTKLTWLNLDYN 69 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCC-------CTTTTTTCTTCCEEECTTS
T ss_pred cCCCCCceEcCC---CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCcc-------CHhHhcCcccCCEEECCCC
Confidence 577899999952 35578899888875 444443 6899999999999843 2346888999999999999
Q ss_pred cccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCc
Q 041374 142 RLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLP 221 (513)
Q Consensus 142 ~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~ 221 (513)
.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++. .+|...+..+++|++|++++|++++..+
T Consensus 70 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 148 (251)
T 3m19_A 70 QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPA 148 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCccCH
Confidence 999988888999999999999999999888888999999999999999998 6776655578999999999999996666
Q ss_pred ccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCC
Q 041374 222 HSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTG 267 (513)
Q Consensus 222 ~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~ 267 (513)
..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+...
T Consensus 149 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 6788999999999999999977777888999999999999988764
No 79
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=1.3e-24 Score=211.52 Aligned_cols=265 Identities=17% Similarity=0.133 Sum_probs=126.2
Q ss_pred EEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCC----ccccCCCC-CCCEEEccCCcccccCcccccCC-----C
Q 041374 159 FLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLP----VNIGFSLP-NLEDLSVRQNNYTGSLPHSLSNA-----S 228 (513)
Q Consensus 159 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp----~~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~l-----~ 228 (513)
++.++.|.+++.+|..+...++|++|++++|.+.+.-+ ..+. .++ +|++|++++|.+++..+..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFA-NTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH-TCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHH-hCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 45667777776666666655667777777776663222 2222 455 66666666666665545444443 6
Q ss_pred CCCeeeCccccccccccccc----cCC-CCCcEEEcCCCCCCCCCCCCchhhcccCC-CcccccccccccccCCcCchhh
Q 041374 229 NLQLLDLSLNHFSGQVKIDF----NRL-PNLFRLNFGKNNLGTGAIGDLDFIAHLTN-CSKLEAFGLDTNIFGGVLPLSI 302 (513)
Q Consensus 229 ~L~~L~L~~n~~~~~~~~~~----~~l-~~L~~L~L~~n~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~n~~~~~~~~~~ 302 (513)
+|++|++++|.+++..+..+ ... ++|++|++++|.++...... +...+.. +++|+.|++++|.+.+.....+
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~--l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSE--FKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH--HHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHH--HHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 66666666666654444332 222 55555555555554422110 1111222 1344444444444433222221
Q ss_pred hccccccceEEeccccceecCCccccCCC-CCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCC-CCCCEEeccc
Q 041374 303 ANLSSTIILFTMGLNQIYGTIPPEVKNLV-NLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNC-QNLMLLSVSN 380 (513)
Q Consensus 303 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~~L~~L~ls~ 380 (513)
+..+...+ +|++|++++|.+++..+..+.. .+..+ ++|++|++++
T Consensus 159 ---------------------~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~------------~l~~~~~~L~~L~Ls~ 205 (362)
T 3goz_A 159 ---------------------IQILAAIPANVNSLNLRGNNLASKNCAELAK------------FLASIPASVTSLDLSA 205 (362)
T ss_dssp ---------------------HHHHHTSCTTCCEEECTTSCGGGSCHHHHHH------------HHHTSCTTCCEEECTT
T ss_pred ---------------------HHHHhcCCccccEeeecCCCCchhhHHHHHH------------HHHhCCCCCCEEECCC
Confidence 11222232 5666666666655433322211 12223 3566666666
Q ss_pred CcCccc----ChHHHHhhhcccceEEccCCcCcccCC----ccccCCCCCCEEeCCCCccCcc-------CCccccCCCC
Q 041374 381 NKLTGA----LPPQILGILTLSILLDLSGNLLTGSIP----TEVGNLKNLVQLDLSENHFSIE-------IPVSLSACTT 445 (513)
Q Consensus 381 n~l~~~----~p~~~~~~~~~l~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~~~~~-------~~~~~~~l~~ 445 (513)
|.+.+. ++..+....+.|++|++++|.+++..+ ..+..+++|++|++++|.+.+. ++..+..+++
T Consensus 206 N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~ 285 (362)
T 3goz_A 206 NLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK 285 (362)
T ss_dssp SCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCE
T ss_pred CCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCc
Confidence 665532 233333323344555555555553322 2234445555555555553211 1223444555
Q ss_pred CCEEeCCCCccccc
Q 041374 446 LEYLYMEGNSVTGS 459 (513)
Q Consensus 446 L~~L~L~~n~l~~~ 459 (513)
|+.|++++|++.+.
T Consensus 286 L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 286 IILVDKNGKEIHPS 299 (362)
T ss_dssp EEEECTTSCBCCGG
T ss_pred eEEEecCCCcCCCc
Confidence 55555555555443
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=3.3e-22 Score=186.43 Aligned_cols=209 Identities=21% Similarity=0.296 Sum_probs=164.6
Q ss_pred cccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCccc
Q 041374 95 YVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSS 174 (513)
Q Consensus 95 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~ 174 (513)
....+++|+.|++++|.++ .++ .+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+++..+..
T Consensus 36 ~~~~l~~L~~L~l~~~~i~--------~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~ 104 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIK--------SVQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGV 104 (272)
T ss_dssp CHHHHTTCCEEECTTSCCC--------CCT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTT
T ss_pred ccccccceeeeeeCCCCcc--------ccc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhH
Confidence 3567889999999999876 333 57889999999999999987 3 47889999999999999999888888
Q ss_pred ccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCC
Q 041374 175 IFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNL 254 (513)
Q Consensus 175 ~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 254 (513)
+.++++|++|++++|++. .++...+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|
T Consensus 105 ~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 183 (272)
T 3rfs_A 105 FDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL 183 (272)
T ss_dssp TTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hcCCcCCCEEECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccC
Confidence 899999999999999998 5555544478999999999999997666677889999999999999987777778889999
Q ss_pred cEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccC
Q 041374 255 FRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKN 329 (513)
Q Consensus 255 ~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 329 (513)
++|++++|.+.+... ..+..+++|+.|++++|.+.+..|. ++.+++..|.+.|.+|.+++.
T Consensus 184 ~~L~L~~N~l~~~~~------~~~~~l~~L~~L~l~~N~~~~~~~~--------l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 184 KDLRLYQNQLKSVPD------GVFDRLTSLQYIWLHDNPWDCTCPG--------IRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp CEEECCSSCCSCCCT------TTTTTCTTCCEEECCSSCBCCCTTT--------THHHHHHHHHTGGGBBCTTSC
T ss_pred CEEECCCCcCCccCH------HHHhCCcCCCEEEccCCCccccCcH--------HHHHHHHHHhCCCcccCcccc
Confidence 999999998876433 3456677888888888766644331 444444455555555554443
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=1.8e-21 Score=182.81 Aligned_cols=157 Identities=24% Similarity=0.236 Sum_probs=106.5
Q ss_pred ccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccc
Q 041374 96 VGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSI 175 (513)
Q Consensus 96 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~ 175 (513)
+.+++++++++++++.++ .+|..+. +++++|++++|.+.+..+..|..+++|++|++++|.+++..+.
T Consensus 6 ~~~l~~l~~l~~~~~~l~--------~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-- 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT--------ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-- 73 (290)
T ss_dssp EECSTTCCEEECTTSCCS--------SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--
T ss_pred ccccCCccEEECCCCCCC--------cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--
Confidence 456677777777777776 4444443 5777788888877776667777778888888888777654332
Q ss_pred cCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCc
Q 041374 176 FNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLF 255 (513)
Q Consensus 176 ~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 255 (513)
..+++|++|++++|.+. .+|..+. .+++|++|++++|++++..+..+..+++|++|++++|++.+..+..|..+++|+
T Consensus 74 ~~l~~L~~L~Ls~N~l~-~l~~~~~-~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151 (290)
T ss_dssp SCCTTCCEEECCSSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCCCcCCEEECCCCcCC-cCchhhc-cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCC
Confidence 56667777777777776 5665554 666777777777777755555666777777777777777655555566666666
Q ss_pred EEEcCCCCCCC
Q 041374 256 RLNFGKNNLGT 266 (513)
Q Consensus 256 ~L~L~~n~~~~ 266 (513)
.|++++|+++.
T Consensus 152 ~L~L~~N~l~~ 162 (290)
T 1p9a_G 152 KLSLANNNLTE 162 (290)
T ss_dssp EEECTTSCCSC
T ss_pred EEECCCCcCCc
Confidence 66666666654
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=9.6e-22 Score=179.70 Aligned_cols=177 Identities=24% Similarity=0.270 Sum_probs=77.8
Q ss_pred cEEEEEcCCCCCccccCccccCCCCCCEEeCCCCC-CcccCCCCCCCCC-cccCCCCCCCEEEeec-CcccccCccccCC
Q 041374 77 RVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNN-LHGEIPYEHGQLP-PSIGNLSALQNIDIAG-NRLHSRVPESLGQ 153 (513)
Q Consensus 77 ~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~-~~~~~l~~L~~L~l~~-n~l~~~~p~~l~~ 153 (513)
.++.|++++|++.+..+..+.++++|++|++++|. ++ .++ ..|.++++|++|++++ |.+++..+..|..
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~--------~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~ 103 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ--------QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKE 103 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC--------EECTTTEESCTTCCEEEEEEETTCCEECTTSEEC
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc--------eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCC
Confidence 34445555555444444444445555555555543 33 111 1344444555555554 4444433344444
Q ss_pred CCCCCEEEcccccCCccCcccccCCCCCc---EEeCCCC-cCcccCCccccCCCCCCC-EEEccCCcccccCcccccCCC
Q 041374 154 LRSLSFLDISENAFSGMFHSSIFNISSLE---LIYPLEN-RLEGSLPVNIGFSLPNLE-DLSVRQNNYTGSLPHSLSNAS 228 (513)
Q Consensus 154 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~---~L~l~~n-~l~~~lp~~~~~~l~~L~-~L~l~~n~l~~~~~~~l~~l~ 228 (513)
+++|++|++++|.+++ +|. +..+++|+ .|++++| .+. .+|...+..+++|+ +|++++|+++ .+|......+
T Consensus 104 l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~ 179 (239)
T 2xwt_C 104 LPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMT-SIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGT 179 (239)
T ss_dssp CTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCC-EECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTC
T ss_pred CCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchh-hcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCC
Confidence 4555555555554443 222 44444444 4444444 444 33333222444444 4444444444 2232222224
Q ss_pred CCCeeeCcccc-ccccccccccCC-CCCcEEEcCCCCCC
Q 041374 229 NLQLLDLSLNH-FSGQVKIDFNRL-PNLFRLNFGKNNLG 265 (513)
Q Consensus 229 ~L~~L~L~~n~-~~~~~~~~~~~l-~~L~~L~L~~n~~~ 265 (513)
+|++|++++|+ +.+..+..|..+ ++|+.|++++|.++
T Consensus 180 ~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 44444444442 443333344444 44444444444443
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=2.6e-23 Score=204.45 Aligned_cols=257 Identities=17% Similarity=0.176 Sum_probs=152.6
Q ss_pred cCcccccCCCCCCeeeCcccccccccc----ccccCCCCCcEEEcCCCCCCCCCCC---Cc-hhhcccCCCccccccccc
Q 041374 219 SLPHSLSNASNLQLLDLSLNHFSGQVK----IDFNRLPNLFRLNFGKNNLGTGAIG---DL-DFIAHLTNCSKLEAFGLD 290 (513)
Q Consensus 219 ~~~~~l~~l~~L~~L~L~~n~~~~~~~----~~~~~l~~L~~L~L~~n~~~~~~~~---~~-~~~~~l~~~~~L~~L~l~ 290 (513)
.++..+..+++|++|++++|.+....+ ..+..+++|++|++++|.+...... .+ .....+..+++|+.|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 455566677777777777777765433 3356677777777777644321110 00 112234566677777777
Q ss_pred ccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCC
Q 041374 291 TNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNC 370 (513)
Q Consensus 291 ~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~ 370 (513)
+|.+.+.... .+|..+..+++|++|++++|.+++..+..++. .+..+
T Consensus 103 ~n~l~~~~~~---------------------~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~------------~l~~l 149 (386)
T 2ca6_A 103 DNAFGPTAQE---------------------PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR------------ALQEL 149 (386)
T ss_dssp SCCCCTTTHH---------------------HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH------------HHHHH
T ss_pred CCcCCHHHHH---------------------HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH------------HHHHH
Confidence 7666642211 12333445666777777777665332222111 11222
Q ss_pred ---------CCCCEEecccCcCcc-cChH--HHHhhhcccceEEccCCcCcc-----cCCccccCCCCCCEEeCCCCccC
Q 041374 371 ---------QNLMLLSVSNNKLTG-ALPP--QILGILTLSILLDLSGNLLTG-----SIPTEVGNLKNLVQLDLSENHFS 433 (513)
Q Consensus 371 ---------~~L~~L~ls~n~l~~-~~p~--~~~~~~~~l~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~~~ 433 (513)
++|++|++++|.+.. .++. ..+...+.|++|++++|+++. ..+..+..+++|++|++++|.++
T Consensus 150 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~ 229 (386)
T 2ca6_A 150 AVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229 (386)
T ss_dssp HHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred hhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCC
Confidence 577777777777652 3332 112233345777777777762 22335666777777777777774
Q ss_pred ----ccCCccccCCCCCCEEeCCCCccccc----ccccccC--CCCCCEEECCCCCCCc----ccchhh-hcccCc-eEE
Q 041374 434 ----IEIPVSLSACTTLEYLYMEGNSVTGS----IPLALNT--LKSIKELDLSRNNLSG----HIPEFL-ENLSFN-KMN 497 (513)
Q Consensus 434 ----~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~--l~~L~~L~l~~n~l~~----~~p~~l-~~l~~l-~l~ 497 (513)
..+|..+..+++|++|+|++|++++. ++..+.. +++|+.|++++|++++ .+|..+ .+++.| +++
T Consensus 230 ~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~ 309 (386)
T 2ca6_A 230 HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 309 (386)
T ss_dssp HHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred cHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEE
Confidence 45666677777777777777777654 4555533 7777777777777776 466666 556777 777
Q ss_pred ccCCcccccCC
Q 041374 498 ETINDFCHHKP 508 (513)
Q Consensus 498 l~~n~l~~~~p 508 (513)
+++|++++..|
T Consensus 310 l~~N~l~~~~~ 320 (386)
T 2ca6_A 310 LNGNRFSEEDD 320 (386)
T ss_dssp CTTSBSCTTSH
T ss_pred ccCCcCCcchh
Confidence 77777776654
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=1.2e-23 Score=202.88 Aligned_cols=211 Identities=15% Similarity=0.178 Sum_probs=160.6
Q ss_pred CCcccceeeCCCCCcEEEEEcCCCCCccccCccccCC--CCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeec
Q 041374 63 LCQWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNL--SFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAG 140 (513)
Q Consensus 63 ~c~~~~v~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~ 140 (513)
|.+|.++.|+. ..++.++++++.+. +..+..+ +++++|++++|.+.+..+ .+..+++|++|++++
T Consensus 36 c~~W~~~~~~~--~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~--------~~~~~~~L~~L~L~~ 102 (336)
T 2ast_B 36 CKRWYRLASDE--SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLA--------EHFSPFRVQHMDLSN 102 (336)
T ss_dssp CHHHHHHHTCS--TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCC--------SCCCCBCCCEEECTT
T ss_pred HHHHHHHhcCc--hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccch--------hhccCCCCCEEEccC
Confidence 45688887752 45788899988776 3445666 889999999998874432 356789999999999
Q ss_pred Cccccc-CccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCC-cCccc-CCccccCCCCCCCEEEccCC-cc
Q 041374 141 NRLHSR-VPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLEN-RLEGS-LPVNIGFSLPNLEDLSVRQN-NY 216 (513)
Q Consensus 141 n~l~~~-~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~-lp~~~~~~l~~L~~L~l~~n-~l 216 (513)
|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|++++| .+.+. ++..+. .+++|++|++++| .+
T Consensus 103 ~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l 181 (336)
T 2ast_B 103 SVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-SCSRLDELNLSWCFDF 181 (336)
T ss_dssp CEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTC
T ss_pred CCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCc
Confidence 998765 7778889999999999999988888888888999999999998 56642 444444 6888999999998 77
Q ss_pred ccc-CcccccCCC-CCCeeeCccc--ccc-ccccccccCCCCCcEEEcCCCC-CCCCCCCCchhhcccCCCccccccccc
Q 041374 217 TGS-LPHSLSNAS-NLQLLDLSLN--HFS-GQVKIDFNRLPNLFRLNFGKNN-LGTGAIGDLDFIAHLTNCSKLEAFGLD 290 (513)
Q Consensus 217 ~~~-~~~~l~~l~-~L~~L~L~~n--~~~-~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~~~~l~~~~~L~~L~l~ 290 (513)
++. ++..+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++. .+..+..+++|+.|+++
T Consensus 182 ~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~------~~~~l~~l~~L~~L~l~ 255 (336)
T 2ast_B 182 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND------CFQEFFQLNYLQHLSLS 255 (336)
T ss_dssp CHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG------GGGGGGGCTTCCEEECT
T ss_pred ChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHH------HHHHHhCCCCCCEeeCC
Confidence 753 566677888 8999999988 444 3455666778888888888887 4442 23456667777777777
Q ss_pred ccc
Q 041374 291 TNI 293 (513)
Q Consensus 291 ~n~ 293 (513)
+|.
T Consensus 256 ~~~ 258 (336)
T 2ast_B 256 RCY 258 (336)
T ss_dssp TCT
T ss_pred CCC
Confidence 774
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=8.9e-23 Score=198.61 Aligned_cols=267 Identities=16% Similarity=0.148 Sum_probs=176.2
Q ss_pred EEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCc----ccccCCC-CCCeeeCccccccccccccccCC-----C
Q 041374 183 LIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLP----HSLSNAS-NLQLLDLSLNHFSGQVKIDFNRL-----P 252 (513)
Q Consensus 183 ~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~----~~l~~l~-~L~~L~L~~n~~~~~~~~~~~~l-----~ 252 (513)
.+.++.|.+.+.+|.... ..++|++|++++|.+++..+ +.+..++ +|++|++++|.+.+..+..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTS-IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHT-SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHHh-CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 356677777766655543 44557777777777775544 5566666 77777777777776655555443 6
Q ss_pred CCcEEEcCCCCCCCCCCCCchhhcccCCC-cccccccccccccCCcCchhhhccccccceEEeccccceecCCccccC-C
Q 041374 253 NLFRLNFGKNNLGTGAIGDLDFIAHLTNC-SKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKN-L 330 (513)
Q Consensus 253 ~L~~L~L~~n~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~-~ 330 (513)
+|++|++++|.++...... +...+..+ ++|+.|++++|.+.+..+..+.. .+.. .
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~--l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~---------------------~l~~~~ 137 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDE--LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ---------------------AFSNLP 137 (362)
T ss_dssp TCCEEECCSSCGGGSCHHH--HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH---------------------HHTTSC
T ss_pred CccEEECcCCcCChHHHHH--HHHHHHhCCCCccEEECcCCcCCcHHHHHHHH---------------------HHHhCC
Confidence 7777777777665432211 11223333 45666666665555444333322 1233 3
Q ss_pred CCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCC-CCCEEecccCcCcccChHHHHhh----hcccceEEccC
Q 041374 331 VNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQ-NLMLLSVSNNKLTGALPPQILGI----LTLSILLDLSG 405 (513)
Q Consensus 331 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~-~L~~L~ls~n~l~~~~p~~~~~~----~~~l~~L~l~~ 405 (513)
++|++|++++|.+++.....+ +..+..++ +|++|++++|.+.+..+..+... ...|++|++++
T Consensus 138 ~~L~~L~Ls~N~l~~~~~~~l------------~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 205 (362)
T 3goz_A 138 ASITSLNLRGNDLGIKSSDEL------------IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSA 205 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHH------------HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred CceeEEEccCCcCCHHHHHHH------------HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCC
Confidence 589999999999886443322 12233344 89999999999987766555432 24679999999
Q ss_pred CcCccc----CCccccC-CCCCCEEeCCCCccCccCC----ccccCCCCCCEEeCCCCcccc-------cccccccCCCC
Q 041374 406 NLLTGS----IPTEVGN-LKNLVQLDLSENHFSIEIP----VSLSACTTLEYLYMEGNSVTG-------SIPLALNTLKS 469 (513)
Q Consensus 406 n~l~~~----~~~~~~~-l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~L~~n~l~~-------~~~~~~~~l~~ 469 (513)
|.+++. ++..+.. .++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+ .++..+..+++
T Consensus 206 N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~ 285 (362)
T 3goz_A 206 NLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK 285 (362)
T ss_dssp SCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCE
T ss_pred CCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCc
Confidence 999863 3444444 4699999999999986544 345778999999999998443 24456778889
Q ss_pred CCEEECCCCCCCcccc
Q 041374 470 IKELDLSRNNLSGHIP 485 (513)
Q Consensus 470 L~~L~l~~n~l~~~~p 485 (513)
|+.||+++|++.+..|
T Consensus 286 L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 286 IILVDKNGKEIHPSHS 301 (362)
T ss_dssp EEEECTTSCBCCGGGC
T ss_pred eEEEecCCCcCCCcch
Confidence 9999999999986644
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=2.2e-22 Score=194.09 Aligned_cols=255 Identities=16% Similarity=0.177 Sum_probs=167.7
Q ss_pred CCCEEEccCCcccccCcccccCC--CCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCc
Q 041374 205 NLEDLSVRQNNYTGSLPHSLSNA--SNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCS 282 (513)
Q Consensus 205 ~L~~L~l~~n~l~~~~~~~l~~l--~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~ 282 (513)
.++.++++++.+. +..+..+ ++++.+++++|.+.+..+. +..+++|++|++++|.+... ..+..+..++
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~-----~~~~~~~~~~ 118 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS-----TLHGILSQCS 118 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH-----HHHHHHTTBC
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH-----HHHHHHhhCC
Confidence 4677888877765 3445555 7788888888877765444 45677777777777765431 1334455566
Q ss_pred ccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCC-cCccCCCccccCCCCeEEec
Q 041374 283 KLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYN-QLTGPIPHAIGELRNLQLRG 361 (513)
Q Consensus 283 ~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~l~~L~l~~ 361 (513)
+|+.|++++|.+.+ ..+..+..+++|++|++++| .+++..
T Consensus 119 ~L~~L~L~~~~l~~-------------------------~~~~~l~~~~~L~~L~L~~~~~l~~~~-------------- 159 (336)
T 2ast_B 119 KLQNLSLEGLRLSD-------------------------PIVNTLAKNSNLVRLNLSGCSGFSEFA-------------- 159 (336)
T ss_dssp CCSEEECTTCBCCH-------------------------HHHHHHTTCTTCSEEECTTCBSCCHHH--------------
T ss_pred CCCEEeCcCcccCH-------------------------HHHHHHhcCCCCCEEECCCCCCCCHHH--------------
Confidence 66666666655443 33444556778888888887 455320
Q ss_pred cCCccccCCCCCCEEecccC-cCccc-ChHHHHhhhcccceEEccCC--cCc-ccCCccccCCCCCCEEeCCCCc-cCcc
Q 041374 362 NVPSSLGNCQNLMLLSVSNN-KLTGA-LPPQILGILTLSILLDLSGN--LLT-GSIPTEVGNLKNLVQLDLSENH-FSIE 435 (513)
Q Consensus 362 ~~~~~l~~~~~L~~L~ls~n-~l~~~-~p~~~~~~~~~l~~L~l~~n--~l~-~~~~~~~~~l~~L~~L~l~~n~-~~~~ 435 (513)
++..+..+++|++|++++| .+++. ++..+...+..|++|++++| .++ +.++..+..+++|++|++++|. +++.
T Consensus 160 -l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 238 (336)
T 2ast_B 160 -LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND 238 (336)
T ss_dssp -HHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG
T ss_pred -HHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHH
Confidence 1222445678888888888 77654 34444443315688888888 454 3456666778888888888888 6667
Q ss_pred CCccccCCCCCCEEeCCCCc-ccccccccccCCCCCCEEECCCCCCCcccchhhhccc-Cc-eEEccCCcccccCCCCCc
Q 041374 436 IPVSLSACTTLEYLYMEGNS-VTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLS-FN-KMNETINDFCHHKPKVFA 512 (513)
Q Consensus 436 ~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~-~l-~l~l~~n~l~~~~p~~~~ 512 (513)
.+..+..+++|++|++++|. +.......+..+++|+.|++++| ++.. .+..+. .+ .+++++|+++|..|....
T Consensus 239 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 239 CFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp GGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred HHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCccc
Confidence 77788888889999998884 44333346777888999999888 4432 333332 24 667788888888887553
No 87
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=8.5e-21 Score=178.21 Aligned_cols=203 Identities=22% Similarity=0.184 Sum_probs=131.6
Q ss_pred ccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccc
Q 041374 248 FNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEV 327 (513)
Q Consensus 248 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 327 (513)
+.+++++++++++++.++..+. .+ .+.++.|++++|.+.+..+..+..++. ++.++++.|.+++..+.
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~-------~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~-- 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPP-------DL--PKDTTILHLSENLLYTFSLATLMPYTR-LTQLNLDRAELTKLQVD-- 73 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCS-------CC--CTTCCEEECTTSCCSEEEGGGGTTCTT-CCEEECTTSCCCEEECC--
T ss_pred ccccCCccEEECCCCCCCcCCC-------CC--CCCCCEEEcCCCcCCccCHHHhhcCCC-CCEEECCCCccCcccCC--
Confidence 5677888888888887765332 11 146777777777777666666666655 77777777776654332
Q ss_pred cCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCc
Q 041374 328 KNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNL 407 (513)
Q Consensus 328 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~ 407 (513)
..+++|++|++++|.+. . +|..+..+++|++|++++|+++ .+|+..+.....|++|++++|+
T Consensus 74 ~~l~~L~~L~Ls~N~l~-~----------------l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~ 135 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQLQ-S----------------LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNE 135 (290)
T ss_dssp SCCTTCCEEECCSSCCS-S----------------CCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSC
T ss_pred CCCCcCCEEECCCCcCC-c----------------CchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCC
Confidence 56667777777777666 2 2233445567777777777776 3443333444445777777777
Q ss_pred CcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCC
Q 041374 408 LTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLS 481 (513)
Q Consensus 408 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 481 (513)
+++..+..+..+++|+.|++++|++.+..+..|..+++|+.|++++|+++ .+|..+..++.|+.+++++|++.
T Consensus 136 l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 76555555666777777777777776444445566777777777777776 56666666667777777777764
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=5e-21 Score=182.08 Aligned_cols=141 Identities=19% Similarity=0.201 Sum_probs=90.3
Q ss_pred CccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChH---HHHhhhcccce
Q 041374 324 PPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPP---QILGILTLSIL 400 (513)
Q Consensus 324 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~---~~~~~~~~l~~ 400 (513)
+..+..+++|++|++++|++.+.... ..+..+..+++|++|++++|+++ .++. .++.....|++
T Consensus 162 ~~~~~~l~~L~~L~Ls~N~l~~~~~~------------~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~ 228 (310)
T 4glp_A 162 CEQVRAFPALTSLDLSDNPGLGERGL------------MAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHS 228 (310)
T ss_dssp TTSCCCCTTCCEEECCSCTTCHHHHH------------HTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSS
T ss_pred HHHhccCCCCCEEECCCCCCccchhh------------hHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCE
Confidence 34455566667777777665431000 00111234567888888888775 3333 23444455688
Q ss_pred EEccCCcCcccCCccccCC---CCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCC
Q 041374 401 LDLSGNLLTGSIPTEVGNL---KNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSR 477 (513)
Q Consensus 401 L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 477 (513)
|++++|++++..|..+..+ ++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|+.|++++
T Consensus 229 L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 229 LDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDG 303 (310)
T ss_dssp EECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSS
T ss_pred EECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcC
Confidence 8888888876666666555 68888888888887 6676654 6888888888888743 33 56677888888888
Q ss_pred CCCCc
Q 041374 478 NNLSG 482 (513)
Q Consensus 478 n~l~~ 482 (513)
|++++
T Consensus 304 N~l~~ 308 (310)
T 4glp_A 304 NPFLV 308 (310)
T ss_dssp TTTSC
T ss_pred CCCCC
Confidence 87763
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=6.5e-23 Score=201.59 Aligned_cols=171 Identities=18% Similarity=0.216 Sum_probs=97.5
Q ss_pred cCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCc---ccccCcccc-------CCCCCCCEEE
Q 041374 92 LSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNR---LHSRVPESL-------GQLRSLSFLD 161 (513)
Q Consensus 92 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~---l~~~~p~~l-------~~l~~L~~L~ 161 (513)
++..+..+++|++|+|++|.+++..+. .++..+..+++|++|++++|. +.+.+|..+ ..+++|++|+
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~---~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAAR---WLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHH---HHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHH---HHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 445566677777777777777643221 133346667777777777753 333444443 5677777777
Q ss_pred cccccCCc----cCcccccCCCCCcEEeCCCCcCcccCCccccC---CC---------CCCCEEEccCCccc-ccCc---
Q 041374 162 ISENAFSG----MFHSSIFNISSLELIYPLENRLEGSLPVNIGF---SL---------PNLEDLSVRQNNYT-GSLP--- 221 (513)
Q Consensus 162 Ls~n~i~~----~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~---~l---------~~L~~L~l~~n~l~-~~~~--- 221 (513)
+++|.++. .++..+..+++|++|++++|.+.+..+..+.. .+ ++|++|++++|+++ +.++
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 77777765 34556666677777777777665322222210 11 56666666666665 2233
Q ss_pred ccccCCCCCCeeeCccccccc-----cccccccCCCCCcEEEcCCCCCC
Q 041374 222 HSLSNASNLQLLDLSLNHFSG-----QVKIDFNRLPNLFRLNFGKNNLG 265 (513)
Q Consensus 222 ~~l~~l~~L~~L~L~~n~~~~-----~~~~~~~~l~~L~~L~L~~n~~~ 265 (513)
..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.++
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~ 229 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCC
Confidence 244455666666666666552 12224555556666666655543
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=4.3e-20 Score=169.97 Aligned_cols=181 Identities=20% Similarity=0.267 Sum_probs=158.6
Q ss_pred CCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCC
Q 041374 100 SFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNIS 179 (513)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 179 (513)
...++++++++.++ .+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+++..+..+.+++
T Consensus 14 ~~~~~l~~~~~~l~--------~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 83 (251)
T 3m19_A 14 EGKKEVDCQGKSLD--------SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT 83 (251)
T ss_dssp GGGTEEECTTCCCS--------SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred CCCeEEecCCCCcc--------ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC
Confidence 35678999999887 5565554 5899999999999998888899999999999999999999899999999
Q ss_pred CCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEc
Q 041374 180 SLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNF 259 (513)
Q Consensus 180 ~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L 259 (513)
+|++|++++|.+. .+|...+..+++|++|++++|++++..+..+..+++|++|++++|++.+..+..+..+++|++|++
T Consensus 84 ~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 162 (251)
T 3m19_A 84 ELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL 162 (251)
T ss_dssp TCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCEEECCCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEEC
Confidence 9999999999999 666655558999999999999999666666889999999999999999777778999999999999
Q ss_pred CCCCCCCCCCCCchhhcccCCCcccccccccccccCCc
Q 041374 260 GKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGV 297 (513)
Q Consensus 260 ~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 297 (513)
++|.+..... ..+..+++|+.|++++|.+...
T Consensus 163 ~~N~l~~~~~------~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 163 STNQLQSVPH------GAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CSSCCSCCCT------TTTTTCTTCCEEECCSCCBCTT
T ss_pred CCCcCCccCH------HHHhCCCCCCEEEeeCCceeCC
Confidence 9999987543 3567788999999999998876
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=3.6e-21 Score=183.04 Aligned_cols=226 Identities=19% Similarity=0.174 Sum_probs=171.2
Q ss_pred CcEEEEEcCCCCCccccCc---cccCCCCCCEEeCCCCCCcccCCCCCCCCCccc--CCCCCCCEEEeecCcccccCc--
Q 041374 76 RRVTKLVLRNQSIGGFLSP---YVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSI--GNLSALQNIDIAGNRLHSRVP-- 148 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~---~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~--~~l~~L~~L~l~~n~l~~~~p-- 148 (513)
..++.+.+.+..+...... ....+++|++|++++|.+++..| ..+ ..+++|++|++++|.+.+..+
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-------~~~~~~~~~~L~~L~Ls~n~i~~~~~~~ 136 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMP-------PLPLEATGLALSSLRLRNVSWATGRSWL 136 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCC-------CCSSSCCCBCCSSCEEESCCCSSTTSSH
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchh-------hhhhhccCCCCCEEEeecccccchhhhh
Confidence 3577888888777543111 12345679999999999885544 344 788999999999999987554
Q ss_pred --cccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCccc--CC-ccccCCCCCCCEEEccCCcccccCcc-
Q 041374 149 --ESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGS--LP-VNIGFSLPNLEDLSVRQNNYTGSLPH- 222 (513)
Q Consensus 149 --~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~--lp-~~~~~~l~~L~~L~l~~n~l~~~~~~- 222 (513)
..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+. ++ ......+++|++|++++|+++ .++.
T Consensus 137 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~ 215 (310)
T 4glp_A 137 AELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGV 215 (310)
T ss_dssp HHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHH
T ss_pred HHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHH
Confidence 3455789999999999999988888999999999999999987642 22 222236889999999999987 3333
Q ss_pred ---cccCCCCCCeeeCccccccccccccccCC---CCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCC
Q 041374 223 ---SLSNASNLQLLDLSLNHFSGQVKIDFNRL---PNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGG 296 (513)
Q Consensus 223 ---~l~~l~~L~~L~L~~n~~~~~~~~~~~~l---~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 296 (513)
.+..+++|++|++++|.+.+..|..+..+ ++|++|++++|.++..+ ..+ .++|+.|++++|.+.+
T Consensus 216 ~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp-------~~~--~~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 216 CAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVP-------KGL--PAKLRVLDLSSNRLNR 286 (310)
T ss_dssp HHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCC-------SCC--CSCCSCEECCSCCCCS
T ss_pred HHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchh-------hhh--cCCCCEEECCCCcCCC
Confidence 24678999999999999988777777766 69999999999988532 222 2789999999999987
Q ss_pred cCchhhhccccccceEEecccccee
Q 041374 297 VLPLSIANLSSTIILFTMGLNQIYG 321 (513)
Q Consensus 297 ~~~~~~~~~~~~l~~l~l~~~~~~~ 321 (513)
. |. +..++. ++.+++++|.++.
T Consensus 287 ~-~~-~~~l~~-L~~L~L~~N~l~~ 308 (310)
T 4glp_A 287 A-PQ-PDELPE-VDNLTLDGNPFLV 308 (310)
T ss_dssp C-CC-TTSCCC-CSCEECSSTTTSC
T ss_pred C-ch-hhhCCC-ccEEECcCCCCCC
Confidence 5 22 345554 8999999998763
No 92
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=2.9e-20 Score=165.95 Aligned_cols=177 Identities=22% Similarity=0.271 Sum_probs=81.7
Q ss_pred CCCCCcccceeeCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEee
Q 041374 60 SISLCQWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIA 139 (513)
Q Consensus 60 ~~~~c~~~~v~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~ 139 (513)
..+.|.|.++.|.... +.. +|..+ .++|++|++++|++++. .+..+.++++|++|+++
T Consensus 3 ~~C~C~~~~v~c~~~~------------l~~-~p~~~--~~~l~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~l~ 60 (208)
T 2o6s_A 3 SRCSCSGTTVECYSQG------------RTS-VPTGI--PAQTTYLDLETNSLKSL-------PNGVFDELTSLTQLYLG 60 (208)
T ss_dssp TTCEEETTEEECCSSC------------CSS-CCSCC--CTTCSEEECCSSCCCCC-------CTTTTTTCTTCSEEECC
T ss_pred CCCEECCCEEEecCCC------------ccC-CCCCC--CCCCcEEEcCCCccCcC-------ChhhhcccccCcEEECC
Confidence 3467899999996421 111 11111 23445555555544411 11123444555555555
Q ss_pred cCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCccccc
Q 041374 140 GNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGS 219 (513)
Q Consensus 140 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~ 219 (513)
+|.+++..+..|..+++|++|++++|.+++..+..+.++++|++|++++|.+. .++...+..+++|++|++++|.+++.
T Consensus 61 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~ 139 (208)
T 2o6s_A 61 GNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSV 139 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCc-ccCHhHhccCCcCCEEECCCCcccee
Confidence 55554433333444555555555555554444444444555555555555554 33333222445555555555555433
Q ss_pred CcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCC
Q 041374 220 LPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGT 266 (513)
Q Consensus 220 ~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~ 266 (513)
.+..+..+++|++|++++|.+. +.+++|+.|+++.|.+++
T Consensus 140 ~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 140 PDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSG 179 (208)
T ss_dssp CTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTT
T ss_pred CHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCc
Confidence 3333444555555555555433 223344444444444443
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=4.4e-20 Score=168.60 Aligned_cols=150 Identities=17% Similarity=0.239 Sum_probs=96.2
Q ss_pred CCCEEeCCCCCCcccCCCCCCCCCc-ccCCCCCCCEEEeecCc-ccccCccccCCCCCCCEEEccc-ccCCccCcccccC
Q 041374 101 FLRFVNLASNNLHGEIPYEHGQLPP-SIGNLSALQNIDIAGNR-LHSRVPESLGQLRSLSFLDISE-NAFSGMFHSSIFN 177 (513)
Q Consensus 101 ~L~~L~L~~n~l~~~~~~~~~~l~~-~~~~l~~L~~L~l~~n~-l~~~~p~~l~~l~~L~~L~Ls~-n~i~~~~~~~~~~ 177 (513)
+|++|++++|++++ +|. .|.++++|++|++++|. ++...+..|.++++|++|++++ |.++...+..|.+
T Consensus 32 ~l~~L~l~~n~l~~--------i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~ 103 (239)
T 2xwt_C 32 STQTLKLIETHLRT--------IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKE 103 (239)
T ss_dssp TCCEEEEESCCCSE--------ECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEEC
T ss_pred cccEEEEeCCcceE--------ECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCC
Confidence 78888888887772 232 56777888888888886 7665556777788888888887 7777666666777
Q ss_pred CCCCcEEeCCCCcCcccCCccccCCCCCCC---EEEccCC-cccccCcccccCCCCCC-eeeCccccccccccccccCCC
Q 041374 178 ISSLELIYPLENRLEGSLPVNIGFSLPNLE---DLSVRQN-NYTGSLPHSLSNASNLQ-LLDLSLNHFSGQVKIDFNRLP 252 (513)
Q Consensus 178 l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~---~L~l~~n-~l~~~~~~~l~~l~~L~-~L~L~~n~~~~~~~~~~~~l~ 252 (513)
+++|++|++++|.+. .+|. +. .+++|+ +|++++| .+++..+..+..+++|+ +|++++|++....+..+.. +
T Consensus 104 l~~L~~L~l~~n~l~-~lp~-~~-~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~ 179 (239)
T 2xwt_C 104 LPLLKFLGIFNTGLK-MFPD-LT-KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-T 179 (239)
T ss_dssp CTTCCEEEEEEECCC-SCCC-CT-TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-C
T ss_pred CCCCCEEeCCCCCCc-cccc-cc-cccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-C
Confidence 777777777777666 3554 22 555555 6666666 66544444456666666 6666666665322222222 4
Q ss_pred CCcEEEcCCC
Q 041374 253 NLFRLNFGKN 262 (513)
Q Consensus 253 ~L~~L~L~~n 262 (513)
+|++|++++|
T Consensus 180 ~L~~L~L~~n 189 (239)
T 2xwt_C 180 KLDAVYLNKN 189 (239)
T ss_dssp EEEEEECTTC
T ss_pred CCCEEEcCCC
Confidence 5555555555
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=6.4e-20 Score=174.00 Aligned_cols=167 Identities=25% Similarity=0.408 Sum_probs=75.9
Q ss_pred cEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCC
Q 041374 77 RVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRS 156 (513)
Q Consensus 77 ~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 156 (513)
+++.|+++++.+... + .+..+++|++|++++|.++ .++. +..+++|++|++++|.+.+ ++ .+..+++
T Consensus 42 ~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~--------~~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~ 108 (308)
T 1h6u_A 42 GITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQIT--------DLAP-LKNLTKITELELSGNPLKN-VS-AIAGLQS 108 (308)
T ss_dssp TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC--------CCGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTT
T ss_pred CcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCC--------CChh-HccCCCCCEEEccCCcCCC-ch-hhcCCCC
Confidence 455555555544432 1 3445555555555555544 2232 4455555555555555544 22 3445555
Q ss_pred CCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCc
Q 041374 157 LSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLS 236 (513)
Q Consensus 157 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 236 (513)
|++|++++|.+++.. .+..+++|+.|++++|.+. .++. +. .+++|++|++++|.+++ ++. +..+++|++|+++
T Consensus 109 L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~-~~~~-l~-~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~ 181 (308)
T 1h6u_A 109 IKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQIT-NISP-LA-GLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKAD 181 (308)
T ss_dssp CCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCC-CCGG-GG-GCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECC
T ss_pred CCEEECCCCCCCCch--hhcCCCCCCEEECCCCccC-cCcc-cc-CCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECC
Confidence 555555555554331 1444445555555554444 2222 22 34444444444444442 222 4444444444444
Q ss_pred cccccccccccccCCCCCcEEEcCCCCCC
Q 041374 237 LNHFSGQVKIDFNRLPNLFRLNFGKNNLG 265 (513)
Q Consensus 237 ~n~~~~~~~~~~~~l~~L~~L~L~~n~~~ 265 (513)
+|.+.+..+ +..+++|++|++++|.+.
T Consensus 182 ~n~l~~~~~--l~~l~~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 182 DNKISDISP--LASLPNLIEVHLKNNQIS 208 (308)
T ss_dssp SSCCCCCGG--GGGCTTCCEEECTTSCCC
T ss_pred CCccCcChh--hcCCCCCCEEEccCCccC
Confidence 444443221 344444444444444443
No 95
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=1.2e-19 Score=172.19 Aligned_cols=195 Identities=20% Similarity=0.295 Sum_probs=166.1
Q ss_pred ccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccc
Q 041374 96 VGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSI 175 (513)
Q Consensus 96 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~ 175 (513)
..++++|++|++++|.++ .++ .+..+++|++|++++|.+.+.. . +..+++|++|++++|.+++. ..+
T Consensus 37 ~~~l~~L~~L~l~~~~i~--------~l~-~~~~l~~L~~L~L~~n~i~~~~-~-~~~l~~L~~L~L~~n~l~~~--~~~ 103 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT--------TIE-GVQYLNNLIGLELKDNQITDLA-P-LKNLTKITELELSGNPLKNV--SAI 103 (308)
T ss_dssp HHHHHTCCEEECTTSCCC--------CCT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCCSCCEEECCSCCCSCC--GGG
T ss_pred HHHcCCcCEEEeeCCCcc--------Cch-hhhccCCCCEEEccCCcCCCCh-h-HccCCCCCEEEccCCcCCCc--hhh
Confidence 456889999999999887 455 5888999999999999998744 4 99999999999999999875 368
Q ss_pred cCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCc
Q 041374 176 FNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLF 255 (513)
Q Consensus 176 ~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 255 (513)
..+++|+.|++++|.+. .++. +. .+++|++|++++|.+++. +. +..+++|++|++++|.+.+..+ +..+++|+
T Consensus 104 ~~l~~L~~L~l~~n~l~-~~~~-l~-~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~ 176 (308)
T 1h6u_A 104 AGLQSIKTLDLTSTQIT-DVTP-LA-GLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLT 176 (308)
T ss_dssp TTCTTCCEEECTTSCCC-CCGG-GT-TCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred cCCCCCCEEECCCCCCC-Cchh-hc-CCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCChh--hcCCCCCC
Confidence 89999999999999998 4554 44 899999999999999854 43 8899999999999999986443 88999999
Q ss_pred EEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEecccccee
Q 041374 256 RLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYG 321 (513)
Q Consensus 256 ~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 321 (513)
.|++++|.+++.. .+..+++|+.|++++|.+.+..+ +..++. ++.+++++|.+++
T Consensus 177 ~L~l~~n~l~~~~--------~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~-L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 177 TLKADDNKISDIS--------PLASLPNLIEVHLKNNQISDVSP--LANTSN-LFIVTLTNQTITN 231 (308)
T ss_dssp EEECCSSCCCCCG--------GGGGCTTCCEEECTTSCCCBCGG--GTTCTT-CCEEEEEEEEEEC
T ss_pred EEECCCCccCcCh--------hhcCCCCCCEEEccCCccCcccc--ccCCCC-CCEEEccCCeeec
Confidence 9999999987632 26788999999999999987764 666666 9999999999875
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=1.7e-19 Score=161.01 Aligned_cols=181 Identities=21% Similarity=0.248 Sum_probs=153.7
Q ss_pred CEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCc
Q 041374 103 RFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLE 182 (513)
Q Consensus 103 ~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 182 (513)
+.++.+++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+
T Consensus 10 ~~v~c~~~~l~--------~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 79 (208)
T 2o6s_A 10 TTVECYSQGRT--------SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLT 79 (208)
T ss_dssp TEEECCSSCCS--------SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CEEEecCCCcc--------CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcC
Confidence 46777777776 455444 35899999999999987777789999999999999999988778889999999
Q ss_pred EEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCC
Q 041374 183 LIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKN 262 (513)
Q Consensus 183 ~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n 262 (513)
+|++++|.+. .+|...+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 80 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 80 YLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred EEECCCCcCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 9999999999 666665558999999999999999766667889999999999999999777777899999999999999
Q ss_pred CCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhcccc
Q 041374 263 NLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSS 307 (513)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 307 (513)
.+.. .+++|+.|+++.|.+.+.+|.+++.++.
T Consensus 159 ~~~~-------------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 159 PWDC-------------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CBCC-------------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred Ceec-------------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 7653 4568899999999999988887776554
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=4.6e-20 Score=187.65 Aligned_cols=208 Identities=24% Similarity=0.303 Sum_probs=168.8
Q ss_pred CCCCCCCCC-----cccce-eeCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCC
Q 041374 56 SWNNSISLC-----QWTGV-TCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGN 129 (513)
Q Consensus 56 ~w~~~~~~c-----~~~~v-~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~ 129 (513)
+|..+..+| .|.++ .|.. .+++.|+++++.+.+ +|..+ +++|++|++++|.++ .+| ..
T Consensus 35 ~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~--------~ip---~~ 98 (571)
T 3cvr_A 35 KWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI--------SLP---EL 98 (571)
T ss_dssp HHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS--------CCC---CC
T ss_pred HHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc--------ccc---cc
Confidence 454444566 68888 6753 579999999999988 66655 389999999999998 455 44
Q ss_pred CCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEE
Q 041374 130 LSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDL 209 (513)
Q Consensus 130 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L 209 (513)
+++|++|++++|.+++ +|. +.. +|++|++++|.+++ +|. .+++|+.|++++|.++ .+|. .+++|++|
T Consensus 99 l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L 165 (571)
T 3cvr_A 99 PASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLT-MLPE----LPTSLEVL 165 (571)
T ss_dssp CTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEE
T ss_pred cCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccC-cCCC----cCCCcCEE
Confidence 7899999999999998 776 665 99999999999998 454 6899999999999998 4776 46899999
Q ss_pred EccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCC-------cEEEcCCCCCCCCCCCCchhhcccCCCc
Q 041374 210 SVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNL-------FRLNFGKNNLGTGAIGDLDFIAHLTNCS 282 (513)
Q Consensus 210 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L-------~~L~L~~n~~~~~~~~~~~~~~~l~~~~ 282 (513)
++++|++++ +|. +. ++|+.|++++|.++ .+|. +.. +| +.|++++|.++.. +..+..++
T Consensus 166 ~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~l-------p~~l~~l~ 230 (571)
T 3cvr_A 166 SVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITHI-------PENILSLD 230 (571)
T ss_dssp ECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCCC-------CGGGGGSC
T ss_pred ECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcceec-------CHHHhcCC
Confidence 999999995 777 65 89999999999998 5555 554 67 9999999998853 34566689
Q ss_pred ccccccccccccCCcCchhhhcccc
Q 041374 283 KLEAFGLDTNIFGGVLPLSIANLSS 307 (513)
Q Consensus 283 ~L~~L~l~~n~~~~~~~~~~~~~~~ 307 (513)
+|+.|++++|.+.+..|..+..+..
T Consensus 231 ~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 231 PTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp TTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred CCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 9999999999999998888877543
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=5.4e-19 Score=170.96 Aligned_cols=105 Identities=17% Similarity=0.109 Sum_probs=51.1
Q ss_pred CCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCE-EEccCCcccccCcccccCCCCCCeee
Q 041374 156 SLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLED-LSVRQNNYTGSLPHSLSNASNLQLLD 234 (513)
Q Consensus 156 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~-L~l~~n~l~~~~~~~l~~l~~L~~L~ 234 (513)
++++|++++|+|+.+.+..|.++++|++|++++|++.+.+|...+.+++++++ +.+..|+++...|..+..+++|++|+
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence 34444444444443333334444444444444444433444444434555443 44445566644455566666666666
Q ss_pred CccccccccccccccCCCCCcEEEcC
Q 041374 235 LSLNHFSGQVKIDFNRLPNLFRLNFG 260 (513)
Q Consensus 235 L~~n~~~~~~~~~~~~l~~L~~L~L~ 260 (513)
+++|++....+..+....++..+++.
T Consensus 111 l~~n~l~~~~~~~~~~~~~l~~l~l~ 136 (350)
T 4ay9_X 111 ISNTGIKHLPDVHKIHSLQKVLLDIQ 136 (350)
T ss_dssp EEEECCSSCCCCTTCCBSSCEEEEEE
T ss_pred ccccccccCCchhhcccchhhhhhhc
Confidence 66666654444444444445555543
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=4.3e-19 Score=171.67 Aligned_cols=197 Identities=17% Similarity=0.154 Sum_probs=88.2
Q ss_pred CCCcccceeeCCCC---------CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCC
Q 041374 62 SLCQWTGVTCGHRH---------RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSA 132 (513)
Q Consensus 62 ~~c~~~~v~c~~~~---------~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~ 132 (513)
+.|.+..|.|.... .+++.|+|++|++....+..|.++++|++|+|++|.+.+.+|. ..|.++++
T Consensus 7 C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~------~~f~~L~~ 80 (350)
T 4ay9_X 7 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA------DVFSNLPK 80 (350)
T ss_dssp SEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECT------TSBCSCTT
T ss_pred cEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccCh------hHhhcchh
Confidence 55788888885321 2344555555555443334445555555555555554432221 13444444
Q ss_pred CCE-EEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCC-CcCcccCCccccCCC-CCCCEE
Q 041374 133 LQN-IDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLE-NRLEGSLPVNIGFSL-PNLEDL 209 (513)
Q Consensus 133 L~~-L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~lp~~~~~~l-~~L~~L 209 (513)
|++ +.+.+|++....|..|..+++|++|++++|.++...+..+....++..+++.+ +.+. .++...+..+ ..+++|
T Consensus 81 l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L 159 (350)
T 4ay9_X 81 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVIL 159 (350)
T ss_dssp CCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEE
T ss_pred hhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhh
Confidence 433 33334444444444455555555555555555444444444444444444433 2232 3333222222 234445
Q ss_pred EccCCcccccCcccccCCCCCCeeeCcc-ccccccccccccCCCCCcEEEcCCCCCCC
Q 041374 210 SVRQNNYTGSLPHSLSNASNLQLLDLSL-NHFSGQVKIDFNRLPNLFRLNFGKNNLGT 266 (513)
Q Consensus 210 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~L~~n~~~~ 266 (513)
++++|+++ .++.......+|+++++.+ |.++...+..|..+++|++|++++|+++.
T Consensus 160 ~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 160 WLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216 (350)
T ss_dssp ECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC
T ss_pred cccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc
Confidence 55555544 2333333334444444443 33332222334444444444444444443
No 100
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=9.5e-19 Score=158.34 Aligned_cols=161 Identities=20% Similarity=0.239 Sum_probs=90.2
Q ss_pred CCCCCCCCCcccceeeCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCE
Q 041374 56 SWNNSISLCQWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQN 135 (513)
Q Consensus 56 ~w~~~~~~c~~~~v~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~ 135 (513)
.|+.+.+.|.|.+|.|... ++. .+|..+. ++|++|++++|.+++. .|..|.++++|++
T Consensus 11 ~~~~~~~~Cs~~~v~c~~~------------~l~-~ip~~~~--~~L~~L~Ls~n~i~~~-------~~~~~~~l~~L~~ 68 (229)
T 3e6j_A 11 AACPSQCSCSGTTVDCRSK------------RHA-SVPAGIP--TNAQILYLHDNQITKL-------EPGVFDSLINLKE 68 (229)
T ss_dssp CCCCTTCEEETTEEECTTS------------CCS-SCCSCCC--TTCSEEECCSSCCCCC-------CTTTTTTCTTCCE
T ss_pred ccCCCCCEEeCCEeEccCC------------CcC-ccCCCCC--CCCCEEEcCCCccCcc-------CHHHhhCccCCcE
Confidence 4555778999999999642 222 2232222 6677777777777632 2345666777777
Q ss_pred EEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCc
Q 041374 136 IDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNN 215 (513)
Q Consensus 136 L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~ 215 (513)
|++++|.+....+..|..+++|++|++++|.+++..+..|..+++|+.|++++|++. .+|..+. .+++|++|++++|+
T Consensus 69 L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~L~~N~ 146 (229)
T 3e6j_A 69 LYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIE-RLTHLTHLALDQNQ 146 (229)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGG-GCTTCSEEECCSSC
T ss_pred EECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccc-cCCCCCEEECCCCc
Confidence 777777776655555667777777777777766554444555555555555555544 4444443 44444444444444
Q ss_pred ccccCcccccCCCCCCeeeCccccc
Q 041374 216 YTGSLPHSLSNASNLQLLDLSLNHF 240 (513)
Q Consensus 216 l~~~~~~~l~~l~~L~~L~L~~n~~ 240 (513)
+++..+..+..+++|+.|++++|.+
T Consensus 147 l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 147 LKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred CCccCHHHHhCCCCCCEEEeeCCCc
Confidence 4432223334444444444444443
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=2.2e-18 Score=154.89 Aligned_cols=134 Identities=20% Similarity=0.269 Sum_probs=76.2
Q ss_pred CCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEc
Q 041374 132 ALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSV 211 (513)
Q Consensus 132 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l 211 (513)
+|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|.++++|++|++++|.+. .+|...+..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEEEC
Confidence 3444444444444433334444444444444444444444444444444444555444444 455554445666666666
Q ss_pred cCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCC
Q 041374 212 RQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGT 266 (513)
Q Consensus 212 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~ 266 (513)
++|++++..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+..
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 6666665556666667777777777777766555566667777777777776544
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=3.5e-18 Score=173.81 Aligned_cols=68 Identities=26% Similarity=0.363 Sum_probs=36.8
Q ss_pred CCCCEEeCCCCccCccCCccccCCCCC-------CEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhccc
Q 041374 420 KNLVQLDLSENHFSIEIPVSLSACTTL-------EYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLS 492 (513)
Q Consensus 420 ~~L~~L~l~~n~~~~~~~~~~~~l~~L-------~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 492 (513)
++|+.|++++|.++ .+|. +.. +| +.|+|++|+++ .+|..+..+++|+.|++++|++++.+|..+..+.
T Consensus 180 ~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 180 ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 45555555555554 3444 322 44 66666666665 4555555566666666666666666666555543
No 103
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=2.6e-18 Score=154.33 Aligned_cols=136 Identities=18% Similarity=0.150 Sum_probs=88.3
Q ss_pred CCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeC
Q 041374 372 NLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYM 451 (513)
Q Consensus 372 ~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 451 (513)
.+++|++++|.+++..+...+...+.|++|++++|++++..+..+..+++|++|++++|.+.+..+..|..+++|++|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 45666666666664444444444445566777777666555556666677777777777766555555666677777777
Q ss_pred CCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEccCCcccccC
Q 041374 452 EGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETINDFCHHK 507 (513)
Q Consensus 452 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n~l~~~~ 507 (513)
++|++++..|..|..+++|+.|++++|++++..|..+..++.| ++++++|++++..
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 7777766666666666777777777777766666666666666 7777777666543
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=8.7e-18 Score=150.91 Aligned_cols=152 Identities=16% Similarity=0.201 Sum_probs=84.8
Q ss_pred EEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCE
Q 041374 80 KLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSF 159 (513)
Q Consensus 80 ~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 159 (513)
.++++++.+.. +|..+ .+.+++|++++|.+++..| +..|.++++|++|++++|.+++..+..|..+++|++
T Consensus 15 ~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~------~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~ 85 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEA------TGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNE 85 (220)
T ss_dssp EEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECC------CCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred EeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCc------hhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCE
Confidence 34455555554 34333 2345677777777763322 123566777777777777777666666777777777
Q ss_pred EEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCcccc
Q 041374 160 LDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNH 239 (513)
Q Consensus 160 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 239 (513)
|++++|.+++..+..|.++++|++|++++|.+.+..|..+. .+++|++|++++|++++..|..+..+++|++|++++|.
T Consensus 86 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 86 ILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI-GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp EECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSST-TCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred EECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcC-CCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 77777777666555555555555555555555532233332 44555555555555554444444444444444444444
Q ss_pred cc
Q 041374 240 FS 241 (513)
Q Consensus 240 ~~ 241 (513)
+.
T Consensus 165 l~ 166 (220)
T 2v70_A 165 FN 166 (220)
T ss_dssp EE
T ss_pred Cc
Confidence 43
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=4.5e-18 Score=159.81 Aligned_cols=150 Identities=26% Similarity=0.348 Sum_probs=70.2
Q ss_pred cCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCC
Q 041374 127 IGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNL 206 (513)
Q Consensus 127 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L 206 (513)
+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|+.|++++|.+.+ ++ .+. .+++|
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~i~~-~~-~l~-~l~~L 136 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISD-IN-GLV-HLPQL 136 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEECTTSCCCC-CG-GGG-GCTTC
T ss_pred HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEECCCCcCCC-Ch-hhc-CCCCC
Confidence 4444445555555554444222 44445555555555544432 124444455555555554442 22 222 34555
Q ss_pred CEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCccccc
Q 041374 207 EDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEA 286 (513)
Q Consensus 207 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~ 286 (513)
++|++++|++++. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.++.. ..+..+++|+.
T Consensus 137 ~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l--------~~l~~l~~L~~ 204 (291)
T 1h6t_A 137 ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--------RALAGLKNLDV 204 (291)
T ss_dssp CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--------GGGTTCTTCSE
T ss_pred CEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC--------hhhccCCCCCE
Confidence 5555555555432 344555555555555555543322 45555555555555554431 12444455555
Q ss_pred ccccccccC
Q 041374 287 FGLDTNIFG 295 (513)
Q Consensus 287 L~l~~n~~~ 295 (513)
|++++|.+.
T Consensus 205 L~l~~n~i~ 213 (291)
T 1h6t_A 205 LELFSQECL 213 (291)
T ss_dssp EEEEEEEEE
T ss_pred EECcCCccc
Confidence 555555443
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=7e-18 Score=158.46 Aligned_cols=171 Identities=24% Similarity=0.367 Sum_probs=147.4
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 155 (513)
.+++.|+++++.+.+. +.+..+++|++|++++|.++ .++. +.++++|++|++++|.+.+ ++ .+..++
T Consensus 46 ~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~--------~~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~ 112 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT--------DIKP-LANLKNLGWLFLDENKVKD-LS-SLKDLK 112 (291)
T ss_dssp HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC--------CCGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCT
T ss_pred CcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccC--------CCcc-cccCCCCCEEECCCCcCCC-Ch-hhccCC
Confidence 5689999999998765 35889999999999999998 4444 8899999999999999987 44 489999
Q ss_pred CCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeC
Q 041374 156 SLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDL 235 (513)
Q Consensus 156 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 235 (513)
+|++|++++|.+++. ..+..+++|+.|++++|.+.+ + ..+. .+++|++|++++|++++..+ +..+++|++|++
T Consensus 113 ~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~-~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L 185 (291)
T 1h6t_A 113 KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD-I-TVLS-RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 185 (291)
T ss_dssp TCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC-C-GGGG-GCTTCSEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCc-c-hhhc-cCCCCCEEEccCCccccchh--hcCCCccCEEEC
Confidence 999999999999875 578899999999999999984 4 3444 78999999999999996544 889999999999
Q ss_pred ccccccccccccccCCCCCcEEEcCCCCCCCCC
Q 041374 236 SLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGA 268 (513)
Q Consensus 236 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 268 (513)
++|.+++. + .+..+++|+.|++++|.+...+
T Consensus 186 ~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 186 SKNHISDL-R-ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp CSSCCCBC-G-GGTTCTTCSEEEEEEEEEECCC
T ss_pred CCCcCCCC-h-hhccCCCCCEEECcCCcccCCc
Confidence 99999864 3 4899999999999999887643
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=6.6e-18 Score=163.96 Aligned_cols=175 Identities=21% Similarity=0.258 Sum_probs=128.3
Q ss_pred EEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccC-CCCCCCEEEeecCcccccCccccCCCCCCCE
Q 041374 81 LVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIG-NLSALQNIDIAGNRLHSRVPESLGQLRSLSF 159 (513)
Q Consensus 81 L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~-~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 159 (513)
++++++++.. +|..+. +.+++|+|++|.+++.. +..+. ++++|++|++++|.+++..+..|..+++|++
T Consensus 23 l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~-------~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~ 92 (361)
T 2xot_A 23 LSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLR-------AEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRY 92 (361)
T ss_dssp EECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEEC-------TTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred EEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccC-------hhhhhhcccccCEEECCCCcCCccChhhccCCCCCCE
Confidence 3444455544 343332 45788888888887322 22455 7888888999888888877778888888999
Q ss_pred EEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccc---cCCCCCCeeeCc
Q 041374 160 LDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSL---SNASNLQLLDLS 236 (513)
Q Consensus 160 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~L~ 236 (513)
|++++|.++...+..|.++++|+.|++++|.+.+..|..+. .+++|++|++++|++++..+..+ ..+++|+.|+++
T Consensus 93 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 93 LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE-DMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECC
T ss_pred EECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhC-CcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECC
Confidence 99988888888777888888899999988888844344444 78889999999998884333333 568889999999
Q ss_pred cccccccccccccCCCC--CcEEEcCCCCCCC
Q 041374 237 LNHFSGQVKIDFNRLPN--LFRLNFGKNNLGT 266 (513)
Q Consensus 237 ~n~~~~~~~~~~~~l~~--L~~L~L~~n~~~~ 266 (513)
+|++....+..+..++. ++.|++++|.+..
T Consensus 172 ~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 172 SNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp SSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 99888666566777776 4788999888765
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=1.6e-17 Score=149.21 Aligned_cols=132 Identities=20% Similarity=0.227 Sum_probs=69.2
Q ss_pred CCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeC
Q 041374 372 NLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYM 451 (513)
Q Consensus 372 ~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 451 (513)
+++.|++++|.+. .++...+.....|++|++++|++++..|..+..+++|++|++++|.+.+..+..|..+++|++|+|
T Consensus 33 ~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 33 TITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 4555555555554 233222233333455555555555444555555555555555555555333333455555555555
Q ss_pred CCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEccCCccc
Q 041374 452 EGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETINDFC 504 (513)
Q Consensus 452 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n~l~ 504 (513)
++|++++..|..|..+++|+.|++++|++++..+..+..++.| ++++++|++.
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 5555555555555555555555555555555444455555555 5555555543
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=6.5e-18 Score=149.13 Aligned_cols=153 Identities=18% Similarity=0.298 Sum_probs=79.9
Q ss_pred cCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCccccc
Q 041374 97 GNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIF 176 (513)
Q Consensus 97 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~ 176 (513)
.++++|++|++++|.++ .+| .+..+++|++|++++|.+.. +..+..+++|++|++++|.+++..+..+.
T Consensus 41 ~~l~~L~~L~l~~n~i~--------~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 109 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT--------DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLS 109 (197)
T ss_dssp HHHHTCCEEEEESSCCS--------CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCT
T ss_pred hhcCCccEEeccCCCcc--------ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhc
Confidence 34455555555555554 333 35555556666665554432 22455555666666666655554455555
Q ss_pred CCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCc-ccccCcccccCCCCCCeeeCccccccccccccccCCCCCc
Q 041374 177 NISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNN-YTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLF 255 (513)
Q Consensus 177 ~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 255 (513)
.+++|++|++++|.+.+..|..+. .+++|++|++++|. ++ .+| .+..+++|++|++++|.+.+. + .+..+++|+
T Consensus 110 ~l~~L~~L~Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~ 184 (197)
T 4ezg_A 110 GLTSLTLLDISHSAHDDSILTKIN-TLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLN 184 (197)
T ss_dssp TCTTCCEEECCSSBCBGGGHHHHT-TCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCC
T ss_pred CCCCCCEEEecCCccCcHhHHHHh-hCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCC
Confidence 555555555555555543444443 45556666666555 33 333 455556666666666655532 2 455555566
Q ss_pred EEEcCCCCCC
Q 041374 256 RLNFGKNNLG 265 (513)
Q Consensus 256 ~L~L~~n~~~ 265 (513)
+|++++|++.
T Consensus 185 ~L~l~~N~i~ 194 (197)
T 4ezg_A 185 QLYAFSQTIG 194 (197)
T ss_dssp EEEECBC---
T ss_pred EEEeeCcccC
Confidence 6665555543
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=2e-17 Score=170.15 Aligned_cols=170 Identities=24% Similarity=0.357 Sum_probs=116.1
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 155 (513)
.+++.|+++++.+... +.+..+++|++|+|++|.+. .++. +..+++|+.|+|++|.+.+ +| .+..++
T Consensus 43 ~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~--------~~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~ 109 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT--------DIKP-LTNLKNLGWLFLDENKIKD-LS-SLKDLK 109 (605)
T ss_dssp TTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCC--------CCGG-GGGCTTCCEEECCSSCCCC-CT-TSTTCT
T ss_pred CCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCC--------CChh-hccCCCCCEEECcCCCCCC-Ch-hhccCC
Confidence 4567777777776653 24677777777777777776 3333 6677777777777777765 33 577777
Q ss_pred CCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeC
Q 041374 156 SLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDL 235 (513)
Q Consensus 156 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 235 (513)
+|++|++++|.+++. ..+..+++|+.|++++|.+.+ + ..+. .+++|++|+|++|.+++..| +..+++|+.|+|
T Consensus 110 ~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-l-~~l~-~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 182 (605)
T 1m9s_A 110 KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD-I-TVLS-RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 182 (605)
T ss_dssp TCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCC-C-GGGG-SCTTCSEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred CCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCC-c-hhhc-ccCCCCEEECcCCcCCCchh--hccCCCCCEEEC
Confidence 777777777777653 346677777777777777763 3 3333 67777777777777775444 667777777777
Q ss_pred ccccccccccccccCCCCCcEEEcCCCCCCCC
Q 041374 236 SLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTG 267 (513)
Q Consensus 236 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~ 267 (513)
++|.+.+. ..+..+++|+.|++++|.+...
T Consensus 183 s~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 183 SKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred cCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 77777643 3467777777777777766553
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=2.6e-17 Score=159.73 Aligned_cols=178 Identities=22% Similarity=0.211 Sum_probs=145.8
Q ss_pred CEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccC-CCCCCCEEEcccccCCccCcccccCCCCC
Q 041374 103 RFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLG-QLRSLSFLDISENAFSGMFHSSIFNISSL 181 (513)
Q Consensus 103 ~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 181 (513)
+.++++++.++ .+|..+. +.+++|++++|.+++..+..+. .+++|++|++++|.+++..+..|.++++|
T Consensus 21 ~~l~c~~~~l~--------~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L 90 (361)
T 2xot_A 21 NILSCSKQQLP--------NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL 90 (361)
T ss_dssp TEEECCSSCCS--------SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CEEEeCCCCcC--------ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCC
Confidence 57899999887 5565543 4689999999999998777787 89999999999999999988999999999
Q ss_pred cEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccc---cCCCCCcEEE
Q 041374 182 ELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDF---NRLPNLFRLN 258 (513)
Q Consensus 182 ~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~---~~l~~L~~L~ 258 (513)
++|++++|++. .++...+..+++|++|++++|++++..+..+..+++|++|++++|.+....+..+ ..+++|+.|+
T Consensus 91 ~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~ 169 (361)
T 2xot_A 91 RYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLD 169 (361)
T ss_dssp CEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEE
T ss_pred CEEECCCCcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEE
Confidence 99999999998 5666555589999999999999997778889999999999999999986555555 5789999999
Q ss_pred cCCCCCCCCCCCCchhhcccCCCcc--cccccccccccCCc
Q 041374 259 FGKNNLGTGAIGDLDFIAHLTNCSK--LEAFGLDTNIFGGV 297 (513)
Q Consensus 259 L~~n~~~~~~~~~~~~~~~l~~~~~--L~~L~l~~n~~~~~ 297 (513)
+++|.+..... ..+..++. ++.|++++|.+...
T Consensus 170 L~~N~l~~l~~------~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 170 LSSNKLKKLPL------TDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CCSSCCCCCCH------HHHHHSCHHHHTTEECCSSCEECC
T ss_pred CCCCCCCccCH------HHhhhccHhhcceEEecCCCccCC
Confidence 99999886432 23344444 47788888877643
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.9e-17 Score=146.16 Aligned_cols=151 Identities=20% Similarity=0.269 Sum_probs=130.2
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 155 (513)
.+++.|+++++.+.. ++ .+..+++|++|++++|.++ . +..+..+++|++|++++|.+++..+..+..++
T Consensus 44 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~--------~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 112 (197)
T 4ezg_A 44 NSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHAT--------N-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLT 112 (197)
T ss_dssp HTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCS--------C-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT
T ss_pred CCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCC--------c-chhhhcCCCCCEEEeECCccCcccChhhcCCC
Confidence 468999999999984 44 6899999999999999665 2 34788999999999999999987888999999
Q ss_pred CCCEEEcccccCCccCcccccCCCCCcEEeCCCCc-CcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeee
Q 041374 156 SLSFLDISENAFSGMFHSSIFNISSLELIYPLENR-LEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLD 234 (513)
Q Consensus 156 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 234 (513)
+|++|++++|.+++..+..+..+++|++|++++|. +. .+| .+. .+++|++|++++|.+++ ++ .+..+++|++|+
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~-~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~ 187 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLK-TLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLY 187 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGG-GCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEE
T ss_pred CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhc-CCCCCCEEECCCCCCcC-hH-HhccCCCCCEEE
Confidence 99999999999998888999999999999999998 65 666 444 79999999999999985 44 688999999999
Q ss_pred Cccccccc
Q 041374 235 LSLNHFSG 242 (513)
Q Consensus 235 L~~n~~~~ 242 (513)
+++|++.+
T Consensus 188 l~~N~i~~ 195 (197)
T 4ezg_A 188 AFSQTIGG 195 (197)
T ss_dssp ECBC----
T ss_pred eeCcccCC
Confidence 99998863
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=6.4e-17 Score=146.26 Aligned_cols=156 Identities=24% Similarity=0.224 Sum_probs=108.5
Q ss_pred cceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccCh
Q 041374 309 IILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALP 388 (513)
Q Consensus 309 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p 388 (513)
...++.+.+.+. .+|..+ .++|++|++++|.+.+..+.. +..+++|++|++++|++. .+|
T Consensus 21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~----------------~~~l~~L~~L~L~~N~l~-~i~ 80 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGV----------------FDSLINLKELYLGSNQLG-ALP 80 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTT----------------TTTCTTCCEEECCSSCCC-CCC
T ss_pred CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHH----------------hhCccCCcEEECCCCCCC-CcC
Confidence 455666555543 666644 377777777777777544433 344567888888888775 566
Q ss_pred HHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCC
Q 041374 389 PQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLK 468 (513)
Q Consensus 389 ~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 468 (513)
...+.....|++|++++|++++..+..+..+++|++|++++|.+. .+|..+..+++|+.|++++|++++..+..+..++
T Consensus 81 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 159 (229)
T 3e6j_A 81 VGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS 159 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCC
Confidence 555555555688888888877655556677788888888888777 6777777778888888888887755556677777
Q ss_pred CCCEEECCCCCCCcccc
Q 041374 469 SIKELDLSRNNLSGHIP 485 (513)
Q Consensus 469 ~L~~L~l~~n~l~~~~p 485 (513)
+|+.|++++|++.+..+
T Consensus 160 ~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 160 SLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TCCEEECTTSCBCTTBG
T ss_pred CCCEEEeeCCCccCCcc
Confidence 88888888887765443
No 114
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=2.7e-18 Score=181.11 Aligned_cols=204 Identities=18% Similarity=0.175 Sum_probs=88.8
Q ss_pred CcHHHHHHHHHHHhhCC-CCCCCCCCCCC-CCCCCcccceeeCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEeCCC
Q 041374 32 SNETDRLAYLAIKSQLQ-DPLGVTKSWNN-SISLCQWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLAS 109 (513)
Q Consensus 32 ~~~~~~~~l~~~~~~~~-~~~~~~~~w~~-~~~~c~~~~v~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~ 109 (513)
..+.++.+++++..... ........|.. ....+.|.++.+.. .+++.++|.++.+... +..+ ++.++|+.
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~-~~~~-----l~~l~Ls~ 200 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDEA-NQAL-----LQHKKLSQ 200 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCcc-hhhH-----hhcCccCc
Confidence 45677788888887764 22333345633 33456787777754 6799999988887763 3322 33344444
Q ss_pred CCCcccCC--CCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCC
Q 041374 110 NNLHGEIP--YEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPL 187 (513)
Q Consensus 110 n~l~~~~~--~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~ 187 (513)
+.+.+... ..+...++.+..++.|++|+|++|.+.. +|..+..+++|++|+|++|.++ .+|..+.++++|++|+++
T Consensus 201 ~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls 278 (727)
T 4b8c_D 201 YSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLS 278 (727)
T ss_dssp ---------------------CCCCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECT
T ss_pred ccccCccccccceecChhhhccCCCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCc
Confidence 44432110 0001234456667777777777777763 5555556777777777777776 556666666667777777
Q ss_pred CCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccc
Q 041374 188 ENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDF 248 (513)
Q Consensus 188 ~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~ 248 (513)
+|.+. .+|..+. .+++|++|+|++|.++ .+|..|+.+++|++|+|++|.+.+..|..+
T Consensus 279 ~N~l~-~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 279 HNRLT-SLPAELG-SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp TSCCS-SCCSSGG-GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCcCC-ccChhhc-CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 66666 6666655 5666666666666665 556666666666666666666665555444
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=2.3e-17 Score=152.49 Aligned_cols=167 Identities=23% Similarity=0.295 Sum_probs=116.1
Q ss_pred EEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCC
Q 041374 78 VTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSL 157 (513)
Q Consensus 78 v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 157 (513)
++.++++++.+.+.. .+.++++|++|++++|.++ .++ .+..+++|++|++++|.+++..+ +..+++|
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~--------~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L 87 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ--------SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKL 87 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC--------CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSC
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc--------cch-HHhhCCCCCEEECCCCccCCChh--hccCCCC
Confidence 344455666665433 4667788888888888776 444 57778888888888888877433 7788888
Q ss_pred CEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCcc
Q 041374 158 SFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSL 237 (513)
Q Consensus 158 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 237 (513)
++|++++|.+++..+ +.. ++|+.|++++|++. .++ .+. .+++|++|++++|++++ ++ .+..+++|++|++++
T Consensus 88 ~~L~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~-~~~-~l~-~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~ 159 (263)
T 1xeu_A 88 EELSVNRNRLKNLNG--IPS-ACLSRLFLDNNELR-DTD-SLI-HLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHG 159 (263)
T ss_dssp CEEECCSSCCSCCTT--CCC-SSCCEEECCSSCCS-BSG-GGT-TCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTT
T ss_pred CEEECCCCccCCcCc--ccc-CcccEEEccCCccC-CCh-hhc-CcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCC
Confidence 888888888776432 222 77777777777777 343 333 67778888888877774 33 577777778888887
Q ss_pred ccccccccccccCCCCCcEEEcCCCCCCCC
Q 041374 238 NHFSGQVKIDFNRLPNLFRLNFGKNNLGTG 267 (513)
Q Consensus 238 n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~ 267 (513)
|.+.+. ..+..+++|+.|++++|.+...
T Consensus 160 N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 160 NEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp SCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 777754 5567777777777777766553
No 116
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=8.8e-17 Score=165.42 Aligned_cols=174 Identities=23% Similarity=0.317 Sum_probs=123.3
Q ss_pred ccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccc
Q 041374 96 VGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSI 175 (513)
Q Consensus 96 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~ 175 (513)
+..+++|++|++++|.+. .++ .+..+++|+.|+|++|.+.+..| +..+++|++|+|++|.+++. ..+
T Consensus 39 ~~~L~~L~~L~l~~n~i~--------~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l 105 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIK--------SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSL 105 (605)
T ss_dssp HHHHTTCCCCBCTTCCCC--------CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTS
T ss_pred hhcCCCCCEEECcCCCCC--------CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhh
Confidence 456677777788777766 333 46777788888888877776443 77777888888888877653 357
Q ss_pred cCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCc
Q 041374 176 FNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLF 255 (513)
Q Consensus 176 ~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 255 (513)
..+++|+.|++++|.+. .++ .+. .+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+..+ +..+++|+
T Consensus 106 ~~l~~L~~L~Ls~N~l~-~l~-~l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~ 178 (605)
T 1m9s_A 106 KDLKKLKSLSLEHNGIS-DIN-GLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQ 178 (605)
T ss_dssp TTCTTCCEEECTTSCCC-CCG-GGG-GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCC
T ss_pred ccCCCCCEEEecCCCCC-CCc-ccc-CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCC
Confidence 77778888888888777 343 333 677788888888877743 457777788888888887775544 77777888
Q ss_pred EEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCc
Q 041374 256 RLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGV 297 (513)
Q Consensus 256 ~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 297 (513)
.|+|++|.+.+. ..+..+++|+.|++++|.+.+.
T Consensus 179 ~L~Ls~N~i~~l--------~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 179 NLYLSKNHISDL--------RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp EEECCSSCCCBC--------GGGTTCTTCSEEECCSEEEECC
T ss_pred EEECcCCCCCCC--------hHHccCCCCCEEEccCCcCcCC
Confidence 888887777652 3466777778888887776654
No 117
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=1.2e-16 Score=140.16 Aligned_cols=133 Identities=21% Similarity=0.272 Sum_probs=97.1
Q ss_pred CEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCC
Q 041374 334 NGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIP 413 (513)
Q Consensus 334 ~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~ 413 (513)
++++++++.++ .+|. .+. +++++|++++|.+.+..+...+.....|++|++++|++++..|
T Consensus 11 ~~l~~s~~~l~-~ip~----------------~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 71 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPR----------------DIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP 71 (192)
T ss_dssp TEEECTTSCCS-SCCS----------------CCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT
T ss_pred CEEEcCCCCcC-cCcc----------------CCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCH
Confidence 77777777775 4433 222 3788888888887744443344455556888888888887777
Q ss_pred ccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccc
Q 041374 414 TEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIP 485 (513)
Q Consensus 414 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 485 (513)
..+..+++|++|++++|.+.+..+..|..+++|++|++++|++++..|..+..+++|+.|++++|++.+..+
T Consensus 72 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 72 NAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp TTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred hHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 778888888888888888887777777788888888888888887777778888888888888888776554
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=3.2e-17 Score=151.48 Aligned_cols=171 Identities=23% Similarity=0.229 Sum_probs=141.6
Q ss_pred CCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccC
Q 041374 98 NLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFN 177 (513)
Q Consensus 98 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~ 177 (513)
.+.+++.++++++.++ .++ .+..+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+ +..
T Consensus 17 ~l~~l~~l~l~~~~i~--------~~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~ 83 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVT--------DLV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKD 83 (263)
T ss_dssp HHHHHHHHHHTCSCTT--------SEE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTT
T ss_pred HHHHHHHHHhcCCCcc--------ccc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hcc
Confidence 4556777788888877 334 57788999999999999986 55 68899999999999999987765 889
Q ss_pred CCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEE
Q 041374 178 ISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRL 257 (513)
Q Consensus 178 l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 257 (513)
+++|+.|++++|++. .+|... . ++|++|++++|++++ ++ .+..+++|++|++++|++++. + .+..+++|+.|
T Consensus 84 l~~L~~L~L~~N~l~-~l~~~~--~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L 155 (263)
T 1xeu_A 84 LTKLEELSVNRNRLK-NLNGIP--S-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVL 155 (263)
T ss_dssp CSSCCEEECCSSCCS-CCTTCC--C-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEE
T ss_pred CCCCCEEECCCCccC-CcCccc--c-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEE
Confidence 999999999999998 566533 2 899999999999985 44 588999999999999999864 3 68889999999
Q ss_pred EcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCc
Q 041374 258 NFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGV 297 (513)
Q Consensus 258 ~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 297 (513)
++++|.+.+. ..+..+++|+.|++++|.+.+.
T Consensus 156 ~L~~N~i~~~--------~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 156 DLHGNEITNT--------GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ECTTSCCCBC--------TTSTTCCCCCEEEEEEEEEECC
T ss_pred ECCCCcCcch--------HHhccCCCCCEEeCCCCcccCC
Confidence 9999998763 4567788888888888887654
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=8.1e-19 Score=179.49 Aligned_cols=106 Identities=25% Similarity=0.301 Sum_probs=61.1
Q ss_pred cceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCC
Q 041374 398 SILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSR 477 (513)
Q Consensus 398 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 477 (513)
++.|++++|.+++ +|. +..+++|+.|++++|.+. .+|..++.+++|+.|+|++|++++ +| .+..+++|+.|++++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 3555666665553 343 555556666666666655 555556666666666666666653 44 555566666666666
Q ss_pred CCCCccc-chhhhcccCc-eEEccCCcccccCC
Q 041374 478 NNLSGHI-PEFLENLSFN-KMNETINDFCHHKP 508 (513)
Q Consensus 478 n~l~~~~-p~~l~~l~~l-~l~l~~n~l~~~~p 508 (513)
|++++.+ |..+..++.| .+++++|++++.+|
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 6665544 5555666666 66666666655544
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=4.6e-17 Score=171.73 Aligned_cols=142 Identities=29% Similarity=0.359 Sum_probs=100.5
Q ss_pred cccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCC
Q 041374 366 SLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTT 445 (513)
Q Consensus 366 ~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 445 (513)
.+..++.|+.|+|++|.+. .+|..++... .|++|++++|.++ .+|..+..+++|++|+|++|.+. .+|..|+.+++
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~-~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~ 294 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIF-NISANIFKYD-FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQ 294 (727)
T ss_dssp ---CCCCCCEEECTTSCCS-CCCGGGGGCC-SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTT
T ss_pred hhccCCCCcEEECCCCCCC-CCChhhcCCC-CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCC
Confidence 3455567777777777776 6666666433 3477777777777 67777777778888888888777 67777777788
Q ss_pred CCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCc--eEEccCCcccccCCCCCc
Q 041374 446 LEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN--KMNETINDFCHHKPKVFA 512 (513)
Q Consensus 446 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l--~l~l~~n~l~~~~p~~~~ 512 (513)
|++|+|++|.++ .+|..|..+++|+.|+|++|++++.+|..+..+... .+++++|.++|.+|..+.
T Consensus 295 L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~ 362 (727)
T 4b8c_D 295 LKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERR 362 (727)
T ss_dssp CSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--
T ss_pred CCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccccc
Confidence 888888888776 667777777888888888888877777777655433 567777777777776553
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=9.4e-19 Score=179.00 Aligned_cols=84 Identities=25% Similarity=0.287 Sum_probs=48.8
Q ss_pred ceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccc-cccccCCCCCCEEECCC
Q 041374 399 ILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSI-PLALNTLKSIKELDLSR 477 (513)
Q Consensus 399 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~ 477 (513)
+.|++++|.++ .+|..+..+++|+.|++++|.+++ +| .++.+++|+.|+|++|++++.. |..+..+++|+.|++++
T Consensus 466 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 466 THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecC
Confidence 55555555555 445555556666666666666653 44 5566666666666666666444 56666666666666666
Q ss_pred CCCCcccc
Q 041374 478 NNLSGHIP 485 (513)
Q Consensus 478 n~l~~~~p 485 (513)
|++++.+|
T Consensus 543 N~l~~~~~ 550 (567)
T 1dce_A 543 NSLCQEEG 550 (567)
T ss_dssp SGGGGSSS
T ss_pred CcCCCCcc
Confidence 66654433
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.65 E-value=1.4e-15 Score=133.31 Aligned_cols=86 Identities=16% Similarity=0.244 Sum_probs=40.6
Q ss_pred CCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCC
Q 041374 101 FLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISS 180 (513)
Q Consensus 101 ~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 180 (513)
++++|++++|.+++..+. ..+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+..|.++++
T Consensus 30 ~l~~L~l~~n~i~~~~~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 103 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSD------GLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQ 103 (192)
T ss_dssp TCSEEECCSCCCCSBCCS------CSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTT
T ss_pred CCCEEECCCCcCCccCCc------cccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCC
Confidence 555555555555421110 12445555555555555555544555555555555555555555444443443444
Q ss_pred CcEEeCCCCcCc
Q 041374 181 LELIYPLENRLE 192 (513)
Q Consensus 181 L~~L~l~~n~l~ 192 (513)
|++|++++|++.
T Consensus 104 L~~L~L~~N~l~ 115 (192)
T 1w8a_A 104 LKTLNLYDNQIS 115 (192)
T ss_dssp CCEEECCSSCCC
T ss_pred CCEEECCCCcCC
Confidence 444443333333
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=1.2e-15 Score=130.97 Aligned_cols=137 Identities=19% Similarity=0.156 Sum_probs=104.0
Q ss_pred CCCCEEecccCcCc-ccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEE
Q 041374 371 QNLMLLSVSNNKLT-GALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYL 449 (513)
Q Consensus 371 ~~L~~L~ls~n~l~-~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 449 (513)
++|+.|++++|.+. +.+|..+.. .+.|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~-l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAE-FVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGG-GGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHh-CCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 57778888888776 566655433 34458888888887754 667788888888888888886677777778888888
Q ss_pred eCCCCccccc-ccccccCCCCCCEEECCCCCCCcccc---hhhhcccCc-eEEccCCcccccCCCCC
Q 041374 450 YMEGNSVTGS-IPLALNTLKSIKELDLSRNNLSGHIP---EFLENLSFN-KMNETINDFCHHKPKVF 511 (513)
Q Consensus 450 ~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p---~~l~~l~~l-~l~l~~n~l~~~~p~~~ 511 (513)
++++|++++. .+..+..+++|+.|++++|++++..+ ..+..++.| ++++++|.+. ++|.+-
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~ 166 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDSD 166 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSSS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccccc
Confidence 8888888753 22678888888889998888886555 478888888 8888888876 556543
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=3e-16 Score=150.29 Aligned_cols=103 Identities=18% Similarity=0.185 Sum_probs=77.7
Q ss_pred CCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCC-EEeCCCCccCccCCccccCCCCCCE
Q 041374 370 CQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLV-QLDLSENHFSIEIPVSLSACTTLEY 448 (513)
Q Consensus 370 ~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~~~l~~L~~ 448 (513)
|++|+.+++++|+++ .+|...|.....|+.+++.+| +.......|.++++|+ .+++.+ .+....+.+|.+|++|+.
T Consensus 225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 567777777777766 666666666666677777776 6555566778888888 888887 666556678888888888
Q ss_pred EeCCCCcccccccccccCCCCCCEEEC
Q 041374 449 LYMEGNSVTGSIPLALNTLKSIKELDL 475 (513)
Q Consensus 449 L~L~~n~l~~~~~~~~~~l~~L~~L~l 475 (513)
+++++|.++...+..|.++++|+.++.
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEeCCCccCccchhhhcCCcchhhhcc
Confidence 888888888666778888888888764
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=1.1e-15 Score=131.23 Aligned_cols=133 Identities=18% Similarity=0.153 Sum_probs=89.2
Q ss_pred CCCCCCEEeCCCCCCc-ccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCccccc
Q 041374 98 NLSFLRFVNLASNNLH-GEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIF 176 (513)
Q Consensus 98 ~l~~L~~L~L~~n~l~-~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~ 176 (513)
..++|++|++++|.++ +. +|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..|..+.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~-------i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 92 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGK-------IEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAE 92 (168)
T ss_dssp CTTSCSEEECCSCBCBTTB-------CSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHH
T ss_pred CcccCCEEECCCCCCChhh-------HHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHh
Confidence 3477888888888876 33 344567778888888888888764 6677888888888888888776666666
Q ss_pred CCCCCcEEeCCCCcCcccCC--ccccCCCCCCCEEEccCCcccccCc---ccccCCCCCCeeeCcccccc
Q 041374 177 NISSLELIYPLENRLEGSLP--VNIGFSLPNLEDLSVRQNNYTGSLP---HSLSNASNLQLLDLSLNHFS 241 (513)
Q Consensus 177 ~l~~L~~L~l~~n~l~~~lp--~~~~~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~L~~n~~~ 241 (513)
++++|++|++++|.+. .+| ..+. .+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 93 ~l~~L~~L~Ls~N~l~-~~~~~~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 93 KLPNLTHLNLSGNKLK-DISTLEPLK-KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp HCTTCCEEECBSSSCC-SSGGGGGGS-SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred hCCCCCEEeccCCccC-cchhHHHHh-cCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 6777777777777666 333 2333 56666666666666663322 24556666666666666554
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=3.1e-15 Score=129.44 Aligned_cols=114 Identities=24% Similarity=0.233 Sum_probs=69.8
Q ss_pred CCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEe
Q 041374 371 QNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLY 450 (513)
Q Consensus 371 ~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 450 (513)
++|++|++++|++. .++...+.....|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 56667777777665 34444334444456667776666644444556666677777777666654445556666677777
Q ss_pred CCCCcccccccccccCCCCCCEEECCCCCCCcccc
Q 041374 451 MEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIP 485 (513)
Q Consensus 451 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 485 (513)
+++|++++..+..+..+++|+.|++++|++.+..|
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 77666664444445666666677777666665544
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=3.5e-15 Score=130.82 Aligned_cols=109 Identities=24% Similarity=0.327 Sum_probs=71.3
Q ss_pred CCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEe
Q 041374 371 QNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLY 450 (513)
Q Consensus 371 ~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 450 (513)
++|++|++++|.+. .+|..+. ....|++|++++|++++..+..+..+++|++|++++|.+.+..+..|..+++|+.|+
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~-~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELS-NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGG-GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCc-hhHHHhh-cccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence 46777777777765 5664333 333447777777777655556666777777777777777655556666777777777
Q ss_pred CCCCcccccccccccCCCCCCEEECCCCCCC
Q 041374 451 MEGNSVTGSIPLALNTLKSIKELDLSRNNLS 481 (513)
Q Consensus 451 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 481 (513)
|++|++++..+..|..+++|+.|++++|++.
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 109 LHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 7777776444445666777777777777664
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=1.1e-15 Score=128.18 Aligned_cols=127 Identities=20% Similarity=0.174 Sum_probs=65.0
Q ss_pred CCCCCEEeCCCCCCc-ccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccC
Q 041374 99 LSFLRFVNLASNNLH-GEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFN 177 (513)
Q Consensus 99 l~~L~~L~L~~n~l~-~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~ 177 (513)
.++|++|++++|.++ +. +|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..
T Consensus 16 ~~~l~~L~l~~n~l~~~~-------~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 86 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGK-------LEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK 86 (149)
T ss_dssp GGGCSEEECTTCBCBTTB-------CCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH
T ss_pred CccCeEEEccCCcCChhH-------HHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh
Confidence 355666666666665 22 233455566666666666666553 45566666666666666666545555544
Q ss_pred CCCCcEEeCCCCcCccc-CCccccCCCCCCCEEEccCCcccccCc---ccccCCCCCCeeeC
Q 041374 178 ISSLELIYPLENRLEGS-LPVNIGFSLPNLEDLSVRQNNYTGSLP---HSLSNASNLQLLDL 235 (513)
Q Consensus 178 l~~L~~L~l~~n~l~~~-lp~~~~~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~L 235 (513)
+++|++|++++|.+.+. .+..+. .+++|++|++++|.+++..+ ..+..+++|++|++
T Consensus 87 l~~L~~L~ls~N~i~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 87 CPNLTHLNLSGNKIKDLSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTTCCEEECTTSCCCSHHHHGGGG-GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCCEEECCCCcCCChHHHHHHh-hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 55555555555555421 112222 44444444444444443222 23444444444443
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.59 E-value=1.7e-14 Score=126.44 Aligned_cols=108 Identities=21% Similarity=0.259 Sum_probs=58.8
Q ss_pred CCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCC
Q 041374 100 SFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNIS 179 (513)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 179 (513)
++|++|++++|.++ .+|..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|.+++
T Consensus 31 ~~l~~L~L~~n~i~--------~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~ 102 (193)
T 2wfh_A 31 RDVTELYLDGNQFT--------LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLK 102 (193)
T ss_dssp TTCCEEECCSSCCC--------SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT
T ss_pred CCCCEEECCCCcCc--------hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCC
Confidence 45666666666665 4455566666666666666666665555566666666666666666655554555555
Q ss_pred CCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcc
Q 041374 180 SLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNY 216 (513)
Q Consensus 180 ~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l 216 (513)
+|+.|++++|.+. .+|...+..+++|++|++++|.+
T Consensus 103 ~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 103 SLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp TCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCe
Confidence 5555555444444 33333222344444444444433
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=2.7e-15 Score=125.90 Aligned_cols=126 Identities=21% Similarity=0.241 Sum_probs=89.3
Q ss_pred CCCCEEecccCcCc-ccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEE
Q 041374 371 QNLMLLSVSNNKLT-GALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYL 449 (513)
Q Consensus 371 ~~L~~L~ls~n~l~-~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 449 (513)
++|+.|++++|.+. +.+|..+.. .+.+++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDE-FEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTT-CTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhh-cCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 45666666666665 455543322 33446777777766643 566778888888888888886677777778888888
Q ss_pred eCCCCccccc-ccccccCCCCCCEEECCCCCCCcccc---hhhhcccCc-eEEcc
Q 041374 450 YMEGNSVTGS-IPLALNTLKSIKELDLSRNNLSGHIP---EFLENLSFN-KMNET 499 (513)
Q Consensus 450 ~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p---~~l~~l~~l-~l~l~ 499 (513)
++++|++++. .+..+..+++|+.|++++|++++..+ ..+..++.| .+|++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 8888888753 34778888888888888888876655 467778888 77765
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=2.5e-14 Score=123.69 Aligned_cols=135 Identities=19% Similarity=0.269 Sum_probs=75.9
Q ss_pred CCCCcccceeeCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeec
Q 041374 61 ISLCQWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAG 140 (513)
Q Consensus 61 ~~~c~~~~v~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~ 140 (513)
.+.|.|.++.|.. +++.. +|..+ .++|++|++++|++++. .+..+.++++|++|++++
T Consensus 4 ~C~C~~~~l~~~~------------~~l~~-~p~~~--~~~l~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~l~~ 61 (177)
T 2o6r_A 4 RCSCSGTEIRCNS------------KGLTS-VPTGI--PSSATRLELESNKLQSL-------PHGVFDKLTQLTKLSLSQ 61 (177)
T ss_dssp TCEEETTEEECCS------------SCCSS-CCTTC--CTTCSEEECCSSCCCCC-------CTTTTTTCTTCSEEECCS
T ss_pred CCEeCCCEEEecC------------CCCcc-CCCCC--CCCCcEEEeCCCcccEe-------CHHHhcCcccccEEECCC
Confidence 3557777777642 23332 22222 25677777777776621 122456667777777777
Q ss_pred CcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccc
Q 041374 141 NRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTG 218 (513)
Q Consensus 141 n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~ 218 (513)
|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+. .+|...+..+++|++|++++|.+.+
T Consensus 62 n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 62 NQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeec
Confidence 7776655555666677777777777666555555555555555555555555 3444333344555555555555443
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=1.4e-14 Score=125.14 Aligned_cols=132 Identities=19% Similarity=0.226 Sum_probs=81.0
Q ss_pred ccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCC-CCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCccc
Q 041374 96 VGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNL-SALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSS 174 (513)
Q Consensus 96 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l-~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~ 174 (513)
+..+++|++|++++|+++ .++. +..+ ++|++|++++|.+++. ..+..+++|++|++++|.+++..+..
T Consensus 15 ~~~~~~L~~L~l~~n~l~--------~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~ 83 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP--------VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGL 83 (176)
T ss_dssp EECTTSCEEEECTTSCCC--------SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCH
T ss_pred cCCcCCceEEEeeCCCCc--------hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcch
Confidence 455667777777777766 3332 3333 3777777777777663 45667777777777777776554444
Q ss_pred ccCCCCCcEEeCCCCcCcccCCc--cccCCCCCCCEEEccCCcccccCccc----ccCCCCCCeeeCcccccc
Q 041374 175 IFNISSLELIYPLENRLEGSLPV--NIGFSLPNLEDLSVRQNNYTGSLPHS----LSNASNLQLLDLSLNHFS 241 (513)
Q Consensus 175 ~~~l~~L~~L~l~~n~l~~~lp~--~~~~~l~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~L~~n~~~ 241 (513)
+..+++|++|++++|.+. .+|. .+. .+++|++|++++|.++ .+|.. +..+++|+.|++++|...
T Consensus 84 ~~~l~~L~~L~L~~N~i~-~~~~~~~l~-~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 84 DQALPDLTELILTNNSLV-ELGDLDPLA-SLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HHHCTTCCEEECCSCCCC-CGGGGGGGG-GCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred hhcCCCCCEEECCCCcCC-cchhhHhhh-cCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 566666666666666664 4554 333 5666666666666665 34442 556666666666666543
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=1.7e-14 Score=124.63 Aligned_cols=132 Identities=17% Similarity=0.112 Sum_probs=105.7
Q ss_pred ccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCC
Q 041374 367 LGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTL 446 (513)
Q Consensus 367 l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 446 (513)
+..+++|+.|++++|.+. .+|. +....+.+++|++++|.+++. ..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 345678889999999887 4543 455554669999999999864 578889999999999999985544555889999
Q ss_pred CEEeCCCCcccccccc--cccCCCCCCEEECCCCCCCcccchh----hhcccCc-eEEccCCccc
Q 041374 447 EYLYMEGNSVTGSIPL--ALNTLKSIKELDLSRNNLSGHIPEF----LENLSFN-KMNETINDFC 504 (513)
Q Consensus 447 ~~L~L~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~p~~----l~~l~~l-~l~l~~n~l~ 504 (513)
++|++++|+++ .+|. .+..+++|+.|++++|+++ .+|.. +..++.| .+|++.|.+.
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99999999996 5565 7888999999999999998 45654 8889999 9999998653
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.52 E-value=2.7e-14 Score=136.66 Aligned_cols=124 Identities=17% Similarity=0.096 Sum_probs=94.2
Q ss_pred CCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCC-EE
Q 041374 371 QNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLE-YL 449 (513)
Q Consensus 371 ~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~-~L 449 (513)
.+++.+.+.++-.. .....+......|+.+++++|+++......|.++++|+.+++.+| +....+.+|.++++|+ .+
T Consensus 202 ~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l 279 (329)
T 3sb4_A 202 RDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTL 279 (329)
T ss_dssp GGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred cccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEE
Confidence 45556666554221 222223333566799999999888666678889999999999988 7656667889999999 99
Q ss_pred eCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEE
Q 041374 450 YMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMN 497 (513)
Q Consensus 450 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~ 497 (513)
++.+ .++...+.+|..+++|+.+++++|++....+.+|.+++.| .++
T Consensus 280 ~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 280 ELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 9988 7776677889999999999999999987777789988888 665
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=3.2e-13 Score=115.64 Aligned_cols=110 Identities=24% Similarity=0.251 Sum_probs=91.3
Q ss_pred CCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeC
Q 041374 372 NLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYM 451 (513)
Q Consensus 372 ~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 451 (513)
..+.+++++|.++ .+|..+ ...+++|++++|++++..|..+..+++|++|++++|.+.+..+..|..+++|++|+|
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 4578999999887 677654 355689999999999777888889999999999999998666667788999999999
Q ss_pred CCCcccccccccccCCCCCCEEECCCCCCCcccc
Q 041374 452 EGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIP 485 (513)
Q Consensus 452 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 485 (513)
++|++++..+..|..+++|+.|++++|++....+
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 9999986666678889999999999999875543
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.45 E-value=7.9e-12 Score=122.14 Aligned_cols=64 Identities=11% Similarity=0.152 Sum_probs=32.6
Q ss_pred ccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCC-CCCEEECCCCC
Q 041374 414 TEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLK-SIKELDLSRNN 479 (513)
Q Consensus 414 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~ 479 (513)
..|.++++|+.+++..+ +......+|.++ +|+.+++++|.+.......|..++ .++.|.+..+.
T Consensus 317 ~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 317 GLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp TTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred hhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 34445555555555433 333334455555 566666666555544444454443 45555555444
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.45 E-value=2.1e-16 Score=139.60 Aligned_cols=155 Identities=24% Similarity=0.301 Sum_probs=92.3
Q ss_pred cCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCccccc
Q 041374 97 GNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIF 176 (513)
Q Consensus 97 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~ 176 (513)
.....++.++++.+.+.|.+|. +..+|..+..+++|++|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+.
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~-l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPP-IEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTT-CCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HhcccccCcchheeEeccccCc-HhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 3445566666666666665543 13555567777777777777777766 55 6667777777777777776 3344455
Q ss_pred CCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCc-ccccCCCCCCeeeCcccccccccccc--------
Q 041374 177 NISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLP-HSLSNASNLQLLDLSLNHFSGQVKID-------- 247 (513)
Q Consensus 177 ~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~-------- 247 (513)
.+++|+.|++++|.+. .+| .+. .+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..|..
T Consensus 91 ~~~~L~~L~L~~N~l~-~l~-~~~-~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~ 167 (198)
T 1ds9_A 91 VADTLEELWISYNQIA-SLS-GIE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRI 167 (198)
T ss_dssp HHHHCSEEEEEEEECC-CHH-HHH-HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHH
T ss_pred cCCcCCEEECcCCcCC-cCC-ccc-cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHH
Confidence 5556666666666665 244 233 45666666666666653211 24566666666666666665443331
Q ss_pred --ccCCCCCcEEE
Q 041374 248 --FNRLPNLFRLN 258 (513)
Q Consensus 248 --~~~l~~L~~L~ 258 (513)
+..+++|+.|+
T Consensus 168 ~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 168 EVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHCSSCSEEC
T ss_pred HHHHhCCCcEEEC
Confidence 45555555554
No 138
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.43 E-value=2.6e-11 Score=118.89 Aligned_cols=119 Identities=15% Similarity=0.098 Sum_probs=69.4
Q ss_pred ccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCC
Q 041374 367 LGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTL 446 (513)
Q Consensus 367 l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 446 (513)
+..+..++.+...... ++...+.....|+.+.+.++ +.......|.++++|+.+++.++ +......+|.+|.+|
T Consensus 272 F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L 345 (394)
T 4fs7_A 272 FYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSL 345 (394)
T ss_dssp TTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTC
T ss_pred cccccccceeccCcee----eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCC
Confidence 3445566666555432 23333444444566666544 44344556667777777777644 543445677777777
Q ss_pred CEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCc
Q 041374 447 EYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN 494 (513)
Q Consensus 447 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l 494 (513)
+.+++..+ ++.....+|..+++|+.+++.++ +. .+..+|.+++.|
T Consensus 346 ~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L 390 (394)
T 4fs7_A 346 SNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKF 390 (394)
T ss_dssp CEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEE
T ss_pred CEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCC
Confidence 77777665 55455566777777777777644 22 234455555554
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.43 E-value=8.8e-13 Score=113.28 Aligned_cols=107 Identities=25% Similarity=0.231 Sum_probs=89.2
Q ss_pred CCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCC
Q 041374 373 LMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYME 452 (513)
Q Consensus 373 L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 452 (513)
-+.++++++.+. .+|..+ ...+++|++++|++++..|..+..+++|++|++++|.+.+..+..|..+++|++|+|+
T Consensus 14 ~~~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 368999999886 777655 3566999999999997778888999999999999999986555567889999999999
Q ss_pred CCcccccccccccCCCCCCEEECCCCCCCcc
Q 041374 453 GNSVTGSIPLALNTLKSIKELDLSRNNLSGH 483 (513)
Q Consensus 453 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 483 (513)
+|++++..+..|..+++|+.|++++|++...
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 9999866555688899999999999998754
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=6.1e-16 Score=136.54 Aligned_cols=148 Identities=20% Similarity=0.302 Sum_probs=118.6
Q ss_pred EEEEEcCCCCCccccCc------cccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCcccc
Q 041374 78 VTKLVLRNQSIGGFLSP------YVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESL 151 (513)
Q Consensus 78 v~~L~l~~~~~~~~~~~------~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l 151 (513)
++.++++.+.+.+..+. .+..+++|++|++++|.++ .+| .+.++++|++|++++|.+.. +|..+
T Consensus 20 l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~--------~l~-~~~~l~~L~~L~l~~n~l~~-l~~~~ 89 (198)
T 1ds9_A 20 VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE--------KIS-SLSGMENLRILSLGRNLIKK-IENLD 89 (198)
T ss_dssp CCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES--------CCC-CHHHHTTCCEEEEEEEEECS-CSSHH
T ss_pred ccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc--------ccc-ccccCCCCCEEECCCCCccc-ccchh
Confidence 33344444444444443 8889999999999999988 456 78889999999999999985 77777
Q ss_pred CCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCc--cccCCCCCCCEEEccCCcccccCcc-------
Q 041374 152 GQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPV--NIGFSLPNLEDLSVRQNNYTGSLPH------- 222 (513)
Q Consensus 152 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~--~~~~~l~~L~~L~l~~n~l~~~~~~------- 222 (513)
..+++|++|++++|.+++. | .+..+++|++|++++|.+. .++. .+. .+++|++|++++|.+.+..|.
T Consensus 90 ~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~-~~~~~~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 165 (198)
T 1ds9_A 90 AVADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKIT-NWGEIDKLA-ALDKLEDLLLAGNPLYNDYKENNATSEY 165 (198)
T ss_dssp HHHHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECC-CHHHHHHHT-TTTTCSEEEECSCHHHHHHHTTTTHHHH
T ss_pred hcCCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCC-chhHHHHHh-cCCCCCEEEecCCccccccccccchHHH
Confidence 7789999999999999874 4 6888999999999999998 4443 344 799999999999999866554
Q ss_pred ---cccCCCCCCeeeCcccccc
Q 041374 223 ---SLSNASNLQLLDLSLNHFS 241 (513)
Q Consensus 223 ---~l~~l~~L~~L~L~~n~~~ 241 (513)
.+..+++|+.|| ++.+.
T Consensus 166 ~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 166 RIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHHHCSSCSEEC--CGGGT
T ss_pred HHHHHHhCCCcEEEC--CcccC
Confidence 278899999997 66654
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.40 E-value=2.4e-12 Score=110.17 Aligned_cols=86 Identities=19% Similarity=0.255 Sum_probs=39.9
Q ss_pred CCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEE
Q 041374 131 SALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLS 210 (513)
Q Consensus 131 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~ 210 (513)
++|++|++++|.+++..|..|.++++|++|++++|.+++..+..|..+++|++|++++|++. .+|...+..+++|++|+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccC-EeCHHHhcCCCCCCEEE
Confidence 34445555555554444444555555555555555554443333444444444444444444 33333222445555555
Q ss_pred ccCCccc
Q 041374 211 VRQNNYT 217 (513)
Q Consensus 211 l~~n~l~ 217 (513)
+++|.++
T Consensus 109 L~~N~~~ 115 (170)
T 3g39_A 109 LLNNPWD 115 (170)
T ss_dssp CCSSCBC
T ss_pred eCCCCCC
Confidence 5555544
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=3.3e-12 Score=109.64 Aligned_cols=86 Identities=17% Similarity=0.227 Sum_probs=41.4
Q ss_pred CCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEE
Q 041374 131 SALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLS 210 (513)
Q Consensus 131 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~ 210 (513)
++|++|++++|.+.+..|..|.++++|++|++++|.+++..+..|.++++|++|++++|++. .+|...+..+++|++|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK-SIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccc-eeCHHHhccccCCCEEE
Confidence 45555555555555544555555555555555555555443333444444444444444444 33333222445555555
Q ss_pred ccCCccc
Q 041374 211 VRQNNYT 217 (513)
Q Consensus 211 l~~n~l~ 217 (513)
+++|.+.
T Consensus 112 L~~N~~~ 118 (174)
T 2r9u_A 112 LYNNPWD 118 (174)
T ss_dssp CCSSCBC
T ss_pred eCCCCcc
Confidence 5555544
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.38 E-value=4.2e-11 Score=117.42 Aligned_cols=324 Identities=10% Similarity=0.055 Sum_probs=170.3
Q ss_pred CccccCCCCCCEEeCCCCCCcccCCCCCCCCC-cccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccC
Q 041374 93 SPYVGNLSFLRFVNLASNNLHGEIPYEHGQLP-PSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMF 171 (513)
Q Consensus 93 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~ 171 (513)
..+|.++.+|+.+.|..+ ++ .+. .+|.+|++|+.+++.++ ++......|.++.+|+.+.+..+ +....
T Consensus 64 ~~AF~~c~~L~~i~lp~~-i~--------~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~ 132 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST-VR--------EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIG 132 (394)
T ss_dssp TTTTTTCTTEEEEECCTT-CC--------EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEEC
T ss_pred HHHhhCCCCceEEEeCCC-cc--------CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeec
Confidence 445666777777776532 32 222 25667777777777543 44444455666666666555433 33333
Q ss_pred cccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCC
Q 041374 172 HSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRL 251 (513)
Q Consensus 172 ~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l 251 (513)
..+|.++..++........ .+....+..+++|+.+.+.++... .....|.++.+|+.+++..+ +.......|.++
T Consensus 133 ~~aF~~~~~~~~~~~~~~~---~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~ 207 (394)
T 4fs7_A 133 VEAFKGCDFKEITIPEGVT---VIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAEC 207 (394)
T ss_dssp TTTTTTCCCSEEECCTTCC---EECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTC
T ss_pred ceeeecccccccccCcccc---ccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccc
Confidence 4444444333322222111 222233335556666666543322 22334555666666665544 332334445555
Q ss_pred CCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCC
Q 041374 252 PNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLV 331 (513)
Q Consensus 252 ~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~ 331 (513)
..|+.+.+..+..... .....+..|+.+.+.. . ....-...+..+.
T Consensus 208 ~~L~~i~~~~~~~~i~--------~~~~~~~~l~~i~ip~-------------------------~-~~~i~~~~f~~~~ 253 (394)
T 4fs7_A 208 ILLENMEFPNSLYYLG--------DFALSKTGVKNIIIPD-------------------------S-FTELGKSVFYGCT 253 (394)
T ss_dssp TTCCBCCCCTTCCEEC--------TTTTTTCCCCEEEECT-------------------------T-CCEECSSTTTTCS
T ss_pred cccceeecCCCceEee--------hhhcccCCCceEEECC-------------------------C-ceecccccccccc
Confidence 5555554433321100 0011122233322211 1 1111122344455
Q ss_pred CCCEEeccCCcCccCCCccccCC---CCeEEecc-C-CccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCC
Q 041374 332 NLNGFGLEYNQLTGPIPHAIGEL---RNLQLRGN-V-PSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGN 406 (513)
Q Consensus 332 ~L~~L~l~~n~~~~~~~~~~~~l---~~L~l~~~-~-~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n 406 (513)
.++.+.+..+... .....+... +.+..... + ...+..+.+|+.+.+.++ +. .++...|.....|+.+++.++
T Consensus 254 ~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~ 330 (394)
T 4fs7_A 254 DLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL 330 (394)
T ss_dssp SCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT
T ss_pred cceeEEcCCCcce-eeccccccccccceeccCceeeccccccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc
Confidence 5555555544222 111222222 22211111 1 123567888999988765 43 566666666666799998754
Q ss_pred cCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEE
Q 041374 407 LLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKEL 473 (513)
Q Consensus 407 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 473 (513)
++......|.++++|+.+++..+ +......+|.+|++|+.+++..+ +. .+...|..+++|+.+
T Consensus 331 -v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 331 -VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp -CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred -ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 66455678889999999999877 66556778999999999999765 33 345678888888764
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.34 E-value=2.3e-13 Score=131.73 Aligned_cols=118 Identities=20% Similarity=0.149 Sum_probs=58.2
Q ss_pred CCCEEecccCcCcccChHHHHhh----hcccceEEccCCcCccc----CCccccCCCCCCEEeCCCCccCccC----Ccc
Q 041374 372 NLMLLSVSNNKLTGALPPQILGI----LTLSILLDLSGNLLTGS----IPTEVGNLKNLVQLDLSENHFSIEI----PVS 439 (513)
Q Consensus 372 ~L~~L~ls~n~l~~~~p~~~~~~----~~~l~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~----~~~ 439 (513)
+|+.|++++|.+.+.....+... .+.|++|++++|.+++. ++..+..+++|++|++++|.+.+.. +..
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~ 206 (372)
T 3un9_A 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ 206 (372)
T ss_dssp TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence 45566666665543322222221 23346666666655432 2223344555666666666554322 334
Q ss_pred ccCCCCCCEEeCCCCccccc----ccccccCCCCCCEEECCCCCCCcccchhhh
Q 041374 440 LSACTTLEYLYMEGNSVTGS----IPLALNTLKSIKELDLSRNNLSGHIPEFLE 489 (513)
Q Consensus 440 ~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~ 489 (513)
+...++|++|+|++|.+++. +...+...++|++|||++|+|++.....+.
T Consensus 207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 44555666666666665532 223333445566666666666544444443
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.34 E-value=1.1e-10 Score=114.15 Aligned_cols=198 Identities=10% Similarity=0.117 Sum_probs=101.3
Q ss_pred ccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCC
Q 041374 126 SIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPN 205 (513)
Q Consensus 126 ~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~ 205 (513)
+|.++ +|+.+++..+ ++......|.+ .+|+.+.+.. .++.+....|.++++|+.+++.+|.+. .++...+ ...+
T Consensus 131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF-~~~~ 204 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTF-VYAG 204 (401)
T ss_dssp TTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTT-TTCC
T ss_pred hcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhE-eecc
Confidence 34443 4666665544 44444444544 3466666654 455555555666666666666666655 5555555 3456
Q ss_pred CCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccc
Q 041374 206 LEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLE 285 (513)
Q Consensus 206 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~ 285 (513)
|+.+.+..+ ++..-...|.++++|+.+++..+ +.......|.. .+|+.+.+.. .+..... .++..|++|+
T Consensus 205 L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~------~aF~~c~~L~ 274 (401)
T 4fdw_A 205 IEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIAS------RAFYYCPELA 274 (401)
T ss_dssp CSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECT------TTTTTCTTCC
T ss_pred cCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEECh------hHhhCCCCCC
Confidence 666666533 33333345556666666666543 33333444444 4566665532 2222111 3345555666
Q ss_pred cccccccccC-----CcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCC
Q 041374 286 AFGLDTNIFG-----GVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYN 341 (513)
Q Consensus 286 ~L~l~~n~~~-----~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 341 (513)
.+.+.++.+. ......|..+.+ ++.+.+. +.+...-...|..+.+|+.+.+..+
T Consensus 275 ~l~l~~~~~~~~~~~~I~~~aF~~c~~-L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 275 EVTTYGSTFNDDPEAMIHPYCLEGCPK-LARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp EEEEESSCCCCCTTCEECTTTTTTCTT-CCEECCC-TTCCEECTTTTTTCCSCCEEEECTT
T ss_pred EEEeCCccccCCcccEECHHHhhCCcc-CCeEEeC-CceEEEhhhhhcCCCCccEEEECcc
Confidence 6655554433 233334444444 5555555 2344444455666677777776543
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.23 E-value=1.4e-13 Score=133.20 Aligned_cols=164 Identities=15% Similarity=0.161 Sum_probs=96.9
Q ss_pred CCCCEEeccCCcCccCCCccccCCCCeEEeccCCcccc-CCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCc
Q 041374 331 VNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLG-NCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLT 409 (513)
Q Consensus 331 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~-~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~ 409 (513)
+.|+++++++|.++......+.. .+. .+++|++|++++|.+.+.....+......+++|++++|.++
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~------------~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~ 139 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAA------------VLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG 139 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHH------------HHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC
T ss_pred hhCCEEEecCCCCCHHHHHHHHH------------HHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC
Confidence 45667777777666332221111 111 22567777777777654444444444445577777777776
Q ss_pred ccCCccc-----cCCCCCCEEeCCCCccCcc----CCccccCCCCCCEEeCCCCccccc----ccccccCCCCCCEEECC
Q 041374 410 GSIPTEV-----GNLKNLVQLDLSENHFSIE----IPVSLSACTTLEYLYMEGNSVTGS----IPLALNTLKSIKELDLS 476 (513)
Q Consensus 410 ~~~~~~~-----~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~ 476 (513)
+.....+ ...++|++|++++|.+++. ++..+..+++|++|+|++|.+++. ++..+...++|+.|+|+
T Consensus 140 ~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls 219 (372)
T 3un9_A 140 PEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVA 219 (372)
T ss_dssp HHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECC
T ss_pred HHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECC
Confidence 4433333 2356777777777776542 333445667777777777777643 24455666677777777
Q ss_pred CCCCCcc----cchhhhcccCc-eEEccCCccccc
Q 041374 477 RNNLSGH----IPEFLENLSFN-KMNETINDFCHH 506 (513)
Q Consensus 477 ~n~l~~~----~p~~l~~l~~l-~l~l~~n~l~~~ 506 (513)
+|.|++. ++..+...+.| ++||++|+|+..
T Consensus 220 ~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 220 YNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp SSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 7777643 33344455667 777777777643
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.22 E-value=2.2e-09 Score=105.19 Aligned_cols=107 Identities=13% Similarity=0.207 Sum_probs=48.7
Q ss_pred cCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCC
Q 041374 368 GNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLE 447 (513)
Q Consensus 368 ~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 447 (513)
..|.+|+.+.+.++.. .+....+.....|+.+.+.. .+.......|.++++|+.+++..+ ++.....+|.+|.+|+
T Consensus 262 ~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 262 DSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eecccccEEecccccc--eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 3344444444443321 22223333333334444432 233233334555555555555543 3323344555556666
Q ss_pred EEeCCCCcccccccccccCCCCCCEEECCCCC
Q 041374 448 YLYMEGNSVTGSIPLALNTLKSIKELDLSRNN 479 (513)
Q Consensus 448 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 479 (513)
.+.|..+ ++.....+|.++++|+.+++.++.
T Consensus 338 ~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 338 RIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp EEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred EEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 6655433 333334455556666666655543
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.21 E-value=5e-11 Score=114.86 Aligned_cols=104 Identities=18% Similarity=0.133 Sum_probs=73.7
Q ss_pred EEecccC-cCcccChHHHHhhhcccceEEccC-CcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCC
Q 041374 375 LLSVSNN-KLTGALPPQILGILTLSILLDLSG-NLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYME 452 (513)
Q Consensus 375 ~L~ls~n-~l~~~~p~~~~~~~~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 452 (513)
.++.+++ .++ .+|. + .....|++|++++ |.+++..+..+..+++|+.|+|++|.+.+..|..|..+++|+.|+|+
T Consensus 12 ~v~~~~~n~l~-~ip~-l-~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-L-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTTT-S-CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-ccCC-C-CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 4577776 666 5776 3 3333457888875 77776666677778888888888888877777777788888888888
Q ss_pred CCcccccccccccCCCCCCEEECCCCCCCc
Q 041374 453 GNSVTGSIPLALNTLKSIKELDLSRNNLSG 482 (513)
Q Consensus 453 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 482 (513)
+|++++..+..+..++ |+.|++.+|++..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 8888755555555554 8888888887763
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.20 E-value=6e-11 Score=114.27 Aligned_cols=107 Identities=20% Similarity=0.248 Sum_probs=56.7
Q ss_pred CCcccceeeCCCCCcEEEEEcCCC-CCccccCccccCCCCCCEEeCCC-CCCcccCCCCCCCCCcccCCCCCCCEEEeec
Q 041374 63 LCQWTGVTCGHRHRRVTKLVLRNQ-SIGGFLSPYVGNLSFLRFVNLAS-NNLHGEIPYEHGQLPPSIGNLSALQNIDIAG 140 (513)
Q Consensus 63 ~c~~~~v~c~~~~~~v~~L~l~~~-~~~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~ 140 (513)
.|.|..+.|. ++ ++.+ +|. +..+++|++|+|++ |.+++. .+..|.++++|++|+|++
T Consensus 7 ~C~~~~v~~~------------~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~-------~~~~~~~l~~L~~L~l~~ 65 (347)
T 2ifg_A 7 PHGSSGLRCT------------RDGALDS-LHH-LPGAENLTELYIENQQHLQHL-------ELRDLRGLGELRNLTIVK 65 (347)
T ss_dssp CSSSSCEECC------------SSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEE-------CGGGSCSCCCCSEEECCS
T ss_pred cccCCEEEcC------------CCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCc-------ChhHhccccCCCEEECCC
Confidence 4777666664 22 3443 444 66666666666664 655521 123455566666666666
Q ss_pred CcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcC
Q 041374 141 NRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRL 191 (513)
Q Consensus 141 n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l 191 (513)
|.+++..|..|.++++|++|+|++|.+++..+..+..++ |+.|++.+|.+
T Consensus 66 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 66 SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp SCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred CccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCc
Confidence 666665555556666666666666665544333333332 44444444443
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.01 E-value=4.3e-08 Score=95.93 Aligned_cols=310 Identities=8% Similarity=0.091 Sum_probs=153.2
Q ss_pred ccccCccccCCCC-CCCEEEcccccCCccCcccccCCCCCcEEeCCCCc---CcccCCccccCCCCCCCEEEccCCcccc
Q 041374 143 LHSRVPESLGQLR-SLSFLDISENAFSGMFHSSIFNISSLELIYPLENR---LEGSLPVNIGFSLPNLEDLSVRQNNYTG 218 (513)
Q Consensus 143 l~~~~p~~l~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~---l~~~lp~~~~~~l~~L~~L~l~~n~l~~ 218 (513)
++..-...|.+++ .|+.+.+..+ ++.+...+|.++++|+.+.+..+. ++ .+....+..+.+|+.+.+..+ ++.
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~ 127 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTE 127 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cce
Confidence 3444445677774 5999999764 777778888899999998887653 43 455555556677777666544 332
Q ss_pred cCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcC
Q 041374 219 SLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVL 298 (513)
Q Consensus 219 ~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 298 (513)
.....+..+.+|+.+.+..+ +.......|..+..|+.+.+..+ +...... ++. +..|+.+.+..+.
T Consensus 128 I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~------aF~-~~~l~~i~ip~~~----- 193 (394)
T 4gt6_A 128 IDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEER------AFT-GTALTQIHIPAKV----- 193 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTT------TTT-TCCCSEEEECTTC-----
T ss_pred ehhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccc------ccc-ccceeEEEECCcc-----
Confidence 33445677778888887643 33344556777777777777543 2211111 111 1234444332211
Q ss_pred chhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCC--CCeEEeccCCccccCCCCCCEE
Q 041374 299 PLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGEL--RNLQLRGNVPSSLGNCQNLMLL 376 (513)
Q Consensus 299 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l--~~L~l~~~~~~~l~~~~~L~~L 376 (513)
...-...+..+..++............--..+... ....+ ........+..+
T Consensus 194 ---------------------~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 247 (394)
T 4gt6_A 194 ---------------------TRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYAL-----IRYPSQREDPAF 247 (394)
T ss_dssp ---------------------CEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEE-----EECCTTCCCSEE
T ss_pred ---------------------cccccchhhhccccceecccccccccccceeecccccccccc-----cccccccccceE
Confidence 01111233344444444443332221000000000 00000 000111223333
Q ss_pred ecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcc
Q 041374 377 SVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSV 456 (513)
Q Consensus 377 ~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 456 (513)
.+... +. .+....|.....|+.+.+.++... .....+.++++|+.+.+.. .+......+|.+|.+|+.++|.++ +
T Consensus 248 ~ip~~-v~-~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v 322 (394)
T 4gt6_A 248 KIPNG-VA-RIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-I 322 (394)
T ss_dssp ECCTT-EE-EECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-C
T ss_pred EcCCc-ce-EcccceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-c
Confidence 33221 11 222233333444455555544322 3344555666666666642 333233445666666666666543 4
Q ss_pred cccccccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEccCC
Q 041374 457 TGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETIN 501 (513)
Q Consensus 457 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n 501 (513)
+.....+|..+.+|+.+.+..+ ++.....+|.++..| .+++.+|
T Consensus 323 ~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 323 TQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred cEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 4334455666666666666433 443334466666666 6666655
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.87 E-value=3.7e-07 Score=88.74 Aligned_cols=121 Identities=12% Similarity=0.132 Sum_probs=69.0
Q ss_pred ccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCC
Q 041374 367 LGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTL 446 (513)
Q Consensus 367 l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 446 (513)
+..+..|+.+.+..+ ++ .+....+.....++.+.+..+ +.......+..+++|+.+.+.++.+......+|.+|.+|
T Consensus 236 f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred ccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 344566666666554 22 344444444444566666443 332334456667777777777766664455667777777
Q ss_pred CEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhccc
Q 041374 447 EYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLS 492 (513)
Q Consensus 447 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 492 (513)
+.+.|..+ ++.....+|.++++|+.+.+..+ ++.....+|.++.
T Consensus 313 ~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 313 SSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred CEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 77777543 44344556777777777777543 4433344555443
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.86 E-value=8.1e-10 Score=105.92 Aligned_cols=188 Identities=14% Similarity=0.179 Sum_probs=103.0
Q ss_pred CcEEEEEcCCCCCcc-c-------cCccccCCCCCCEEeCCCCCCccc-CC-CCCCCCCcccCCCCCCCEEEeecCcccc
Q 041374 76 RRVTKLVLRNQSIGG-F-------LSPYVGNLSFLRFVNLASNNLHGE-IP-YEHGQLPPSIGNLSALQNIDIAGNRLHS 145 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~-~-------~~~~l~~l~~L~~L~L~~n~l~~~-~~-~~~~~l~~~~~~l~~L~~L~l~~n~l~~ 145 (513)
.+|+.|.+......+ . +..++.++++|+.|.+.+...... +. ...+.+...+..+++|+.|+++++.-..
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence 457777777655442 1 234456789999999876533210 00 0001344556778899999998873222
Q ss_pred cCccccCCCCCCCEEEcccccCCccCccccc--CCCCCcEEeCCC--CcCccc-----CCccc-cCCCCCCCEEEccCCc
Q 041374 146 RVPESLGQLRSLSFLDISENAFSGMFHSSIF--NISSLELIYPLE--NRLEGS-----LPVNI-GFSLPNLEDLSVRQNN 215 (513)
Q Consensus 146 ~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~l~~--n~l~~~-----lp~~~-~~~l~~L~~L~l~~n~ 215 (513)
++. +. +++|++|++..|.++......+. .+++|+.|+++. +...+. +...+ ...+++|++|++.+|.
T Consensus 187 -l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 187 -IGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp -CCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred -ecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 333 33 78899999988887654444443 678888887743 111111 11111 1135667777776666
Q ss_pred ccccCccccc---CCCCCCeeeCcccccccccc----ccccCCCCCcEEEcCCCCCCC
Q 041374 216 YTGSLPHSLS---NASNLQLLDLSLNHFSGQVK----IDFNRLPNLFRLNFGKNNLGT 266 (513)
Q Consensus 216 l~~~~~~~l~---~l~~L~~L~L~~n~~~~~~~----~~~~~l~~L~~L~L~~n~~~~ 266 (513)
+....+..+. .+++|++|+++.|.+.+..+ ..+..+++|+.|+++.|.++.
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 6533222222 35566666666666654322 222334555555555555443
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.77 E-value=1.1e-08 Score=98.16 Aligned_cols=157 Identities=17% Similarity=0.154 Sum_probs=98.2
Q ss_pred ccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHh-hhcccceEEc
Q 041374 325 PEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILG-ILTLSILLDL 403 (513)
Q Consensus 325 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~-~~~~l~~L~l 403 (513)
..+..+++|++|++++|.-. . ++. + .+++|+.|++..|.+.......+.. ..+.|+.|++
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~----------------l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L 226 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-S----------------IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVL 226 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-B----------------CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEE
T ss_pred HHHhcCCCCcEEEEeCCCCc-e----------------ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEE
Confidence 34556778888888776211 0 111 1 1467888888877765443333331 2345588877
Q ss_pred cC--CcCccc-----CCccc--cCCCCCCEEeCCCCccCccCCccc---cCCCCCCEEeCCCCccccc----ccccccCC
Q 041374 404 SG--NLLTGS-----IPTEV--GNLKNLVQLDLSENHFSIEIPVSL---SACTTLEYLYMEGNSVTGS----IPLALNTL 467 (513)
Q Consensus 404 ~~--n~l~~~-----~~~~~--~~l~~L~~L~l~~n~~~~~~~~~~---~~l~~L~~L~L~~n~l~~~----~~~~~~~l 467 (513)
+. +...+. +...+ ..+|+|++|++.+|.+.+..+..+ ..+++|++|+|+.|.+.+. ++..+..+
T Consensus 227 ~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l 306 (362)
T 2ra8_A 227 YVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKI 306 (362)
T ss_dssp ECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHH
T ss_pred eccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccC
Confidence 53 111111 11122 257899999999998875443333 3578999999999998864 34445667
Q ss_pred CCCCEEECCCCCCCcccchhhhc-ccCc-eEEccCCc
Q 041374 468 KSIKELDLSRNNLSGHIPEFLEN-LSFN-KMNETIND 502 (513)
Q Consensus 468 ~~L~~L~l~~n~l~~~~p~~l~~-l~~l-~l~l~~n~ 502 (513)
++|+.|++++|.++...-..+.. + . .++++.|+
T Consensus 307 ~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 307 KHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp TTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 89999999999887654444443 2 3 88888876
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.66 E-value=1.7e-06 Score=83.96 Aligned_cols=302 Identities=11% Similarity=0.064 Sum_probs=170.6
Q ss_pred ccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCC
Q 041374 126 SIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPN 205 (513)
Q Consensus 126 ~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~ 205 (513)
++....+|+.+.+.. .++.....+|.++.+|+.+.+..+ ++.+...+|.++ +|+.+.+..+ +. .+....+ ...+
T Consensus 41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF-~~~~ 114 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVF-QGTD 114 (379)
T ss_dssp TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTT-TTCC
T ss_pred ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-Eecccee-ccCC
Confidence 556677888888864 466655667888889999988654 665666667665 4666555432 32 3444444 2345
Q ss_pred CCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccc
Q 041374 206 LEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLE 285 (513)
Q Consensus 206 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~ 285 (513)
|+.+.+..+-.. .....+.+. +++.+.+..+ +.......|.....++...+.......
T Consensus 115 L~~i~lp~~~~~-i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~------------------- 172 (379)
T 4h09_A 115 LDDFEFPGATTE-IGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNY------------------- 172 (379)
T ss_dssp CSEEECCTTCCE-ECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSE-------------------
T ss_pred cccccCCCcccc-ccccccccc-eeeeeeccce-eeccccchhccccccccccccccccee-------------------
Confidence 666666543211 112222222 3333333221 111222233333444433332221100
Q ss_pred cccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCc
Q 041374 286 AFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPS 365 (513)
Q Consensus 286 ~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~ 365 (513)
...... ..... ......+.....+..+.+...... ....
T Consensus 173 -----------~~~~~~----------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-----------------i~~~ 211 (379)
T 4h09_A 173 -----------VAENYV----------LYNKN---KTILESYPAAKTGTEFTIPSTVKT-----------------VTAY 211 (379)
T ss_dssp -----------EEETTE----------EEETT---SSEEEECCTTCCCSEEECCTTCCE-----------------ECTT
T ss_pred -----------ecccce----------ecccc---cceeccccccccccccccccceeE-----------------Eeec
Confidence 000000 00000 001111223334444433322111 1112
Q ss_pred cccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCC
Q 041374 366 SLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTT 445 (513)
Q Consensus 366 ~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 445 (513)
.+..+.+|+.+.+..+ +. .+....+.....|+.+.+..+ ++......+.++.+|+.+.+..+ +......+|.+|++
T Consensus 212 ~f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTT
T ss_pred ccccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccc
Confidence 3445677888887654 22 444445555566688888765 55455667888999999999765 54345568899999
Q ss_pred CCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEccCC
Q 041374 446 LEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETIN 501 (513)
Q Consensus 446 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n 501 (513)
|+.+.+.++.++.....+|.++.+|+.+.+.++ +......+|.++..| .+++..+
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred cccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 999999999888667788999999999999755 664455689999988 7777543
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.53 E-value=5.3e-08 Score=84.11 Aligned_cols=115 Identities=13% Similarity=0.102 Sum_probs=64.2
Q ss_pred ccCCCCCCEEecccC-cCcccChHHHHh---hhcccceEEccCCcCcccC----CccccCCCCCCEEeCCCCccCcc---
Q 041374 367 LGNCQNLMLLSVSNN-KLTGALPPQILG---ILTLSILLDLSGNLLTGSI----PTEVGNLKNLVQLDLSENHFSIE--- 435 (513)
Q Consensus 367 l~~~~~L~~L~ls~n-~l~~~~p~~~~~---~~~~l~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~~~~~--- 435 (513)
+..+++|++|++++| .+...-...+.. ..+.+++|++++|.+.+.. ...+...+.|++|++++|.+.+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 456778888888888 775432222221 1233466677776665432 22333445666666666666543
Q ss_pred -CCccccCCCCCCEEeC--CCCccccc----ccccccCCCCCCEEECCCCCCC
Q 041374 436 -IPVSLSACTTLEYLYM--EGNSVTGS----IPLALNTLKSIKELDLSRNNLS 481 (513)
Q Consensus 436 -~~~~~~~l~~L~~L~L--~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~ 481 (513)
+...+...++|++|+| ++|.+++. +...+...+.|++|++++|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2344555566666666 56666543 2333444466666666666654
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.50 E-value=3.9e-08 Score=85.00 Aligned_cols=106 Identities=18% Similarity=0.180 Sum_probs=49.1
Q ss_pred cceEEccCC-cCccc----CCccccCCCCCCEEeCCCCccCccC----CccccCCCCCCEEeCCCCccccc----ccccc
Q 041374 398 SILLDLSGN-LLTGS----IPTEVGNLKNLVQLDLSENHFSIEI----PVSLSACTTLEYLYMEGNSVTGS----IPLAL 464 (513)
Q Consensus 398 l~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~L~~n~l~~~----~~~~~ 464 (513)
+++|++++| .+.+. +...+...++|++|++++|.+.+.. ...+...++|++|+|++|.+++. +...+
T Consensus 38 L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L 117 (185)
T 1io0_A 38 LEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEAL 117 (185)
T ss_dssp CCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGG
T ss_pred CCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHH
Confidence 355555555 54422 2223334455555555555554321 22233345555555555555532 23334
Q ss_pred cCCCCCCEEEC--CCCCCCcc----cchhhhcccCc-eEEccCCcc
Q 041374 465 NTLKSIKELDL--SRNNLSGH----IPEFLENLSFN-KMNETINDF 503 (513)
Q Consensus 465 ~~l~~L~~L~l--~~n~l~~~----~p~~l~~l~~l-~l~l~~n~l 503 (513)
...+.|++|+| ++|.|... +.+.+...+.| ++++++|.+
T Consensus 118 ~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 118 QSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp GGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 44455555555 45555433 22233334455 555555554
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.30 E-value=7e-07 Score=81.04 Aligned_cols=79 Identities=23% Similarity=0.399 Sum_probs=51.5
Q ss_pred cCCCCCCEEeCCCCccCc--cCCccccCCCCCCEEeCCCCcccccccccccCCC--CCCEEECCCCCCCcccch------
Q 041374 417 GNLKNLVQLDLSENHFSI--EIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLK--SIKELDLSRNNLSGHIPE------ 486 (513)
Q Consensus 417 ~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~p~------ 486 (513)
.++++|+.|+|++|.+.+ .+|..+..+++|+.|+|++|++.+. ..+..+. +|++|++++|++++.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 356777777777777775 3455566777788888888877744 2233333 778888888887765552
Q ss_pred -hhhcccCc-eEE
Q 041374 487 -FLENLSFN-KMN 497 (513)
Q Consensus 487 -~l~~l~~l-~l~ 497 (513)
.+..++.| .||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 34556666 554
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.26 E-value=2.1e-07 Score=78.20 Aligned_cols=85 Identities=16% Similarity=0.112 Sum_probs=65.1
Q ss_pred cceEEccCCcCcccCCccccCCCCCCEEeCCCCc-cCccCCccccCC----CCCCEEeCCCCc-ccccccccccCCCCCC
Q 041374 398 SILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENH-FSIEIPVSLSAC----TTLEYLYMEGNS-VTGSIPLALNTLKSIK 471 (513)
Q Consensus 398 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 471 (513)
++.||+++|.+++.....+..+++|++|+|++|. +++..-..+..+ ++|+.|+|++|. +++..-..+..+++|+
T Consensus 63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~ 142 (176)
T 3e4g_A 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLK 142 (176)
T ss_dssp EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCC
T ss_pred EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCC
Confidence 3677777777766656667788999999999985 766555556654 479999999985 8877677788899999
Q ss_pred EEECCCCC-CCc
Q 041374 472 ELDLSRNN-LSG 482 (513)
Q Consensus 472 ~L~l~~n~-l~~ 482 (513)
.|++++|+ ++.
T Consensus 143 ~L~L~~c~~Itd 154 (176)
T 3e4g_A 143 YLFLSDLPGVKE 154 (176)
T ss_dssp EEEEESCTTCCC
T ss_pred EEECCCCCCCCc
Confidence 99999987 553
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.23 E-value=2.4e-07 Score=84.14 Aligned_cols=89 Identities=19% Similarity=0.206 Sum_probs=66.2
Q ss_pred CCCCCCE--EeCCCCccC---ccCCccccCCCCCCEEeCCCCcccc--cccccccCCCCCCEEECCCCCCCcccchhhhc
Q 041374 418 NLKNLVQ--LDLSENHFS---IEIPVSLSACTTLEYLYMEGNSVTG--SIPLALNTLKSIKELDLSRNNLSGHIPEFLEN 490 (513)
Q Consensus 418 ~l~~L~~--L~l~~n~~~---~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~ 490 (513)
..+.|+. ++++.|... ..+......+++|+.|+|++|++.+ .+|..+..+++|+.|+|++|+|.+. +.+..
T Consensus 139 ~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~ 216 (267)
T 3rw6_A 139 SDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDK 216 (267)
T ss_dssp GCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGG
T ss_pred CCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhh
Confidence 3344444 666777432 2222233568999999999999997 4567778999999999999999864 33455
Q ss_pred cc--Cc-eEEccCCcccccCC
Q 041374 491 LS--FN-KMNETINDFCHHKP 508 (513)
Q Consensus 491 l~--~l-~l~l~~n~l~~~~p 508 (513)
+. .| ++++++|++++.+|
T Consensus 217 l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 217 IKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp GTTSCCSEEECTTSTTGGGCS
T ss_pred cccCCcceEEccCCcCccccC
Confidence 55 78 99999999999777
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.17 E-value=6.8e-07 Score=75.14 Aligned_cols=85 Identities=9% Similarity=-0.021 Sum_probs=72.9
Q ss_pred CCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCc-ccccccccccCC----CCCCEEECCCCC-CCcccchhhhcccC
Q 041374 420 KNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNS-VTGSIPLALNTL----KSIKELDLSRNN-LSGHIPEFLENLSF 493 (513)
Q Consensus 420 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~l~~n~-l~~~~p~~l~~l~~ 493 (513)
..|+.||+++|.+++..-..+..+++|+.|+|++|. +++..-..+..+ ++|+.|+|++|. ++...-..+..++.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 479999999999998877888999999999999995 887766677765 479999999996 88777778889999
Q ss_pred c-eEEccCCc-cc
Q 041374 494 N-KMNETIND-FC 504 (513)
Q Consensus 494 l-~l~l~~n~-l~ 504 (513)
| +|++++++ ++
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 9 99999985 44
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.38 E-value=0.00012 Score=62.66 Aligned_cols=85 Identities=11% Similarity=0.098 Sum_probs=37.9
Q ss_pred CCCCCCEEecccC-cCcccChHHHH---hhhcccceEEccCCcCcccCCc----cccCCCCCCEEeCCCCccCccC----
Q 041374 369 NCQNLMLLSVSNN-KLTGALPPQIL---GILTLSILLDLSGNLLTGSIPT----EVGNLKNLVQLDLSENHFSIEI---- 436 (513)
Q Consensus 369 ~~~~L~~L~ls~n-~l~~~~p~~~~---~~~~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~~~~~~---- 436 (513)
..+.|++|+|+++ .+..+-...+. ..-+.++.|++++|++.+.... .+..-+.|++|+|++|.+.+..
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3466777777764 55422111111 1122235555555555433222 2223345555555555554322
Q ss_pred CccccCCCCCCEEeCCC
Q 041374 437 PVSLSACTTLEYLYMEG 453 (513)
Q Consensus 437 ~~~~~~l~~L~~L~L~~ 453 (513)
.+++..-+.|++|+|++
T Consensus 119 a~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHTTTTCCCSEEECCC
T ss_pred HHHHhhCCceeEEECCC
Confidence 22333344455555543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.18 E-value=0.00025 Score=60.66 Aligned_cols=109 Identities=14% Similarity=0.104 Sum_probs=67.2
Q ss_pred cccceEEccCC-cCccc----CCccccCCCCCCEEeCCCCccCccCC----ccccCCCCCCEEeCCCCccccc----ccc
Q 041374 396 TLSILLDLSGN-LLTGS----IPTEVGNLKNLVQLDLSENHFSIEIP----VSLSACTTLEYLYMEGNSVTGS----IPL 462 (513)
Q Consensus 396 ~~l~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~L~~n~l~~~----~~~ 462 (513)
+.|++|+++++ ++.+. +.+.+..-+.|+.|+|++|.+.+... +.+...+.|++|+|++|.|++. +-+
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 34577888775 66532 33445556778888888887764433 3344567788888888887754 333
Q ss_pred cccCCCCCCEEECCCC---CCCc----ccchhhhcccCc-eEEccCCccc
Q 041374 463 ALNTLKSIKELDLSRN---NLSG----HIPEFLENLSFN-KMNETINDFC 504 (513)
Q Consensus 463 ~~~~l~~L~~L~l~~n---~l~~----~~p~~l~~l~~l-~l~l~~n~l~ 504 (513)
.+..-+.|++|+|++| .+.. .+.+.+..-+.| +++++.|.+.
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 4445566888888765 3332 234455666667 7777776543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.63 E-value=0.0042 Score=49.46 Aligned_cols=57 Identities=26% Similarity=0.262 Sum_probs=38.4
Q ss_pred ceEEccCCcCc-ccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCccc
Q 041374 399 ILLDLSGNLLT-GSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVT 457 (513)
Q Consensus 399 ~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 457 (513)
..++.+++.++ ..+|..+. ++|++|+|++|.++..-+..|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46677777775 24554332 46788888888887544556677788888888887664
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.36 E-value=0.0073 Score=48.04 Aligned_cols=13 Identities=15% Similarity=0.217 Sum_probs=6.0
Q ss_pred CCCEEEcccccCC
Q 041374 156 SLSFLDISENAFS 168 (513)
Q Consensus 156 ~L~~L~Ls~n~i~ 168 (513)
+|++|+|++|.|+
T Consensus 32 ~l~~L~Ls~N~l~ 44 (130)
T 3rfe_A 32 DTTELVLTGNNLT 44 (130)
T ss_dssp TCSEEECTTSCCS
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=45.76 E-value=26 Score=25.69 Aligned_cols=38 Identities=11% Similarity=0.100 Sum_probs=16.9
Q ss_pred ccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEccc
Q 041374 126 SIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISE 164 (513)
Q Consensus 126 ~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~ 164 (513)
+|.+|..|+.+.+..+ ++..-...|.++.+|+.+.+.+
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3455555555555432 2222333444444554444443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=44.81 E-value=24 Score=25.86 Aligned_cols=46 Identities=20% Similarity=0.302 Sum_probs=29.9
Q ss_pred CcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCC
Q 041374 408 LTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGN 454 (513)
Q Consensus 408 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 454 (513)
++......|.++++|+.+.+..+ ++.....+|.+|.+|+.+.+.+.
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 44344456677777877777765 33345567777788877777653
Done!