BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041376
         (79 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2L61|A Chain A, Protein And Metal Cluster Structure Of The Wheat
          Metallothionein Domain G-Ec-1. The Second Part Of The
          Puzzle.
 pdb|2L62|A Chain A, Protein And Metal Cluster Structure Of The Wheat
          Metallothionein Domain G-Ec-1. The Second Part Of The
          Puzzle
          Length = 26

 Score = 31.6 bits (70), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 13/22 (59%), Positives = 16/22 (72%)

Query: 12 CNDTCGCPVPCPGGAACSCSTV 33
          C+D CGC VPCPGG  C C++ 
Sbjct: 4  CDDKCGCAVPCPGGTGCRCTSA 25


>pdb|2JH1|A Chain A, Crystal Structure Of Toxoplasma Gondii Micronemal Protein
           1
          Length = 246

 Score = 25.8 bits (55), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 10/16 (62%), Positives = 12/16 (75%)

Query: 10  VHCNDTCGCPVPCPGG 25
           V+C D CG  +PCPGG
Sbjct: 85  VNCVDDCGHTIPCPGG 100


>pdb|2JH7|A Chain A, Crystal Structure Of Toxoplasma Gondii Micronemal Protein
           1 Bound To 6'-Sialyl-N-Acetyllactosamine
 pdb|2JHD|A Chain A, Crystal Structure Of Toxoplasma Gondii Micronemal Protein
           1 Bound To 3'-Sialyl-N-Acetyllactosamine
 pdb|3F53|A Chain A, Crystal Structure Of Toxoplasma Gondii Micronemal Protein
           1 Bound To 2f-3'sialacnac
 pdb|3F5A|A Chain A, Crystal Structure Of Toxoplasma Gondii Micronemal Protein
           1 Bound To 3'sialacnac1-3
 pdb|3F5E|A Chain A, Crystal Structure Of Toxoplasma Gondii Micronemal Protein
           1 Bound To 2'f-3'sialacnac1-3
          Length = 246

 Score = 25.4 bits (54), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 10/16 (62%), Positives = 12/16 (75%)

Query: 10  VHCNDTCGCPVPCPGG 25
           V+C D CG  +PCPGG
Sbjct: 85  VNCVDDCGHTIPCPGG 100


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.133    0.488 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,960,420
Number of Sequences: 62578
Number of extensions: 45422
Number of successful extensions: 100
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 94
Number of HSP's gapped (non-prelim): 13
length of query: 79
length of database: 14,973,337
effective HSP length: 48
effective length of query: 31
effective length of database: 11,969,593
effective search space: 371057383
effective search space used: 371057383
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)