Query 041376
Match_columns 79
No_of_seqs 25 out of 27
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 10:42:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041376.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041376hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kak_A EC protein I/II; metall 99.8 3.4E-22 1.2E-26 123.6 1.8 42 38-79 1-45 (53)
2 2l61_A EC protein I/II; metall 99.3 4.9E-13 1.7E-17 72.9 0.4 23 10-32 2-24 (26)
3 1qjl_A Metallothionein; metal- 86.2 0.3 1E-05 26.3 1.3 17 41-57 11-27 (28)
4 2kak_A EC protein I/II; metall 83.4 0.33 1.1E-05 29.7 0.7 45 10-59 6-51 (53)
5 1t2y_A Metallothionein, MT; pr 50.3 9.1 0.00031 20.3 1.7 10 69-78 11-20 (26)
6 1e0f_I Haemadin, factor IIA; c 16.8 60 0.002 19.6 1.4 8 19-26 7-14 (57)
7 1m0j_A Metallothionein MT_NC; 16.2 64 0.0022 17.1 1.3 16 42-57 10-25 (28)
8 3ope_A Probable histone-lysine 14.4 1.1E+02 0.0037 21.0 2.4 8 14-21 23-30 (222)
9 1ju8_A Leginsulin, albumin 1; 11.0 1E+02 0.0035 17.3 1.2 12 20-32 13-24 (37)
10 1p8b_A PEA albumin 1, subunit 9.1 97 0.0033 17.4 0.6 12 20-32 13-24 (37)
No 1
>2kak_A EC protein I/II; metallothionein, solution structure, wheat EC-1, Zn binding, metal-binding, metal-thiolate cluster, zinc; NMR {Triticum aestivum}
Probab=99.84 E-value=3.4e-22 Score=123.58 Aligned_cols=42 Identities=45% Similarity=1.243 Sum_probs=39.6
Q ss_pred ccceeecCCCCccccCCccCCce-eccCC--ccccccCCCcccCC
Q 041376 38 YYHKCCSCGGHCSCNPCTCSKIQ-ANKIG--KAHCSCGTACKCPT 79 (79)
Q Consensus 38 ~~H~~C~CGEHCgCNPCtC~k~~-~~g~g--ka~C~CG~~C~C~s 79 (79)
.+|+||+|||||+||||+|||++ ++|++ ||||+||++|+|++
T Consensus 1 ~~H~tC~CGEHCgCnPCtC~k~~~~sG~g~rka~C~CG~~C~Cas 45 (53)
T 2kak_A 1 GEHTTCGCGEHCGCNPCACGREGTPSGRANRRANCSCGAACNCAS 45 (53)
T ss_dssp CCCSCBTTTBCCTTSCCTTCCCCCCCCSSSSCSCCCCCSSCCCHH
T ss_pred CCcccccCCCcccccCccCCCccccccccccccccccCCCccccc
Confidence 38999999999999999999998 88998 99999999999974
No 2
>2l61_A EC protein I/II; metallothionein, wheat EC-1, Zn binding, metal-thiolate CLUS metal binding protein; NMR {Triticum aestivum} PDB: 2l62_A
Probab=99.27 E-value=4.9e-13 Score=72.87 Aligned_cols=23 Identities=57% Similarity=1.681 Sum_probs=21.3
Q ss_pred eEeCCCCCCCcCCCCCCcceeee
Q 041376 10 VHCNDTCGCPVPCPGGAACSCST 32 (79)
Q Consensus 10 ~~C~d~CGC~vPCpgG~~CrC~~ 32 (79)
++|||+||||||||||++|||++
T Consensus 2 ~~cnd~cGCpvPCpGg~acRcs~ 24 (26)
T 2l61_A 2 SGCDDKCGCAVPCPGGTGCRCTS 24 (26)
T ss_dssp CCCCGGGSSCSSCSSSTTSGGGS
T ss_pred ccccCCCCCcccCCCCcceeeee
Confidence 57999999999999999999954
No 3
>1qjl_A Metallothionein; metal-binding, detoxification, radical scavenger; NMR {Strongylocentrotus purpuratus} SCOP: g.46.1.1
Probab=86.20 E-value=0.3 Score=26.31 Aligned_cols=17 Identities=41% Similarity=1.249 Sum_probs=14.4
Q ss_pred eeecCCCCccccCCccC
Q 041376 41 KCCSCGGHCSCNPCTCS 57 (79)
Q Consensus 41 ~~C~CGEHCgCNPCtC~ 57 (79)
..|.||..|.|+||+|.
T Consensus 11 ~~CkCgs~C~C~~C~C~ 27 (28)
T 1qjl_A 11 NGCKCGSGCSCTEGNCA 27 (28)
T ss_dssp TTCCTTSCCCCBTTBCC
T ss_pred CCCccCCCcccCCcccc
Confidence 34999999999999984
No 4
>2kak_A EC protein I/II; metallothionein, solution structure, wheat EC-1, Zn binding, metal-binding, metal-thiolate cluster, zinc; NMR {Triticum aestivum}
Probab=83.40 E-value=0.33 Score=29.67 Aligned_cols=45 Identities=31% Similarity=0.892 Sum_probs=28.4
Q ss_pred eEeCCCCCCCcCCCCCCcceeeecc-cCcccceeecCCCCccccCCccCCc
Q 041376 10 VHCNDTCGCPVPCPGGAACSCSTVA-YSEYYHKCCSCGGHCSCNPCTCSKI 59 (79)
Q Consensus 10 ~~C~d~CGC~vPCpgG~~CrC~~~~-~~~~~H~~C~CGEHCgCNPCtC~k~ 59 (79)
..|-+-|+| +||.... +... +.+....+|+||+-|.|.-|.+++.
T Consensus 6 C~CGEHCgC-nPCtC~k----~~~~sG~g~rka~C~CG~~C~CasC~~a~a 51 (53)
T 2kak_A 6 CGCGEHCGC-NPCACGR----EGTPSGRANRRANCSCGAACNCASCGSATA 51 (53)
T ss_dssp BTTTBCCTT-SCCTTCC----CCCCCCSSSSCSCCCCCSSCCCHHHHCCSS
T ss_pred ccCCCcccc-cCccCCC----ccccccccccccccccCCCccccccccccC
Confidence 345555666 3443322 1111 4455578999999999999888764
No 5
>1t2y_A Metallothionein, MT; protein fold, no secondary structural elements, metal binding protein; NMR {Synthetic} SCOP: g.46.1.1
Probab=50.34 E-value=9.1 Score=20.32 Aligned_cols=10 Identities=50% Similarity=1.863 Sum_probs=7.2
Q ss_pred cccCCCcccC
Q 041376 69 CSCGTACKCP 78 (79)
Q Consensus 69 C~CG~~C~C~ 78 (79)
|.||.+|+|.
T Consensus 11 C~Cg~~CsC~ 20 (26)
T 1t2y_A 11 CNCGSGCSCS 20 (26)
T ss_dssp CCCSSSCCSS
T ss_pred ccCCCCcccc
Confidence 7777777764
No 6
>1e0f_I Haemadin, factor IIA; coagulation//heparin-B, coagulation/crystal structure/heparin-binding site/ hirudin/thrombin inhibitor; 3.1A {Haemadipsa sylvestris} SCOP: g.3.15.2
Probab=16.76 E-value=60 Score=19.63 Aligned_cols=8 Identities=63% Similarity=1.506 Sum_probs=5.5
Q ss_pred CcCCCCCC
Q 041376 19 PVPCPGGA 26 (79)
Q Consensus 19 ~vPCpgG~ 26 (79)
-||||.|.
T Consensus 7 kvpcpdge 14 (57)
T 1e0f_I 7 KVPCPDGE 14 (57)
T ss_dssp SSBCCSSS
T ss_pred cccCCCCc
Confidence 37888764
No 7
>1m0j_A Metallothionein MT_NC; cadmium thiolate-cluster, metal binding protein; NMR {Notothenia coriiceps} SCOP: g.46.1.1
Probab=16.19 E-value=64 Score=17.10 Aligned_cols=16 Identities=50% Similarity=1.769 Sum_probs=11.7
Q ss_pred eecCCCCccccCCccC
Q 041376 42 CCSCGGHCSCNPCTCS 57 (79)
Q Consensus 42 ~C~CGEHCgCNPCtC~ 57 (79)
.|.|+..|.|.-|.|.
T Consensus 10 sC~C~~sCkC~~C~Ct 25 (28)
T 1m0j_A 10 TCNCGGSCTCTNCSCK 25 (28)
T ss_dssp SCCCSSSCCSSSCCCT
T ss_pred cccCCCccccCCccCc
Confidence 5778888887777763
No 8
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}
Probab=14.36 E-value=1.1e+02 Score=20.97 Aligned_cols=8 Identities=50% Similarity=1.298 Sum_probs=4.0
Q ss_pred CCCCCCcC
Q 041376 14 DTCGCPVP 21 (79)
Q Consensus 14 d~CGC~vP 21 (79)
..|.|..|
T Consensus 23 ~~C~C~~~ 30 (222)
T 3ope_A 23 TTCNCKKP 30 (222)
T ss_dssp CCCCCCCC
T ss_pred ccccCcCC
Confidence 34555544
No 9
>1ju8_A Leginsulin, albumin 1; T-knot, hormone/growth factor complex; NMR {Synthetic} SCOP: g.3.6.4
Probab=11.00 E-value=1e+02 Score=17.31 Aligned_cols=12 Identities=33% Similarity=1.046 Sum_probs=9.3
Q ss_pred cCCCCCCcceeee
Q 041376 20 VPCPGGAACSCST 32 (79)
Q Consensus 20 vPCpgG~~CrC~~ 32 (79)
.|| +-+.|||--
T Consensus 13 PPC-~s~~CRCiP 24 (37)
T 1ju8_A 13 PPC-RSRDCRCVP 24 (37)
T ss_dssp SSS-SCTTSEEEE
T ss_pred CCC-CCCCeeEEE
Confidence 588 578999954
No 10
>1p8b_A PEA albumin 1, subunit B; inhibitor cystine-knot, plant protein; NMR {Pisum sativum} SCOP: g.3.6.4
Probab=9.09 E-value=97 Score=17.43 Aligned_cols=12 Identities=50% Similarity=1.315 Sum_probs=9.1
Q ss_pred cCCCCCCcceeee
Q 041376 20 VPCPGGAACSCST 32 (79)
Q Consensus 20 vPCpgG~~CrC~~ 32 (79)
.|| +-+.|||--
T Consensus 13 PPC-~s~~CRCIP 24 (37)
T 1p8b_A 13 PPC-GTSACRCIP 24 (37)
T ss_dssp SGG-GCSSSEEEC
T ss_pred CCC-CCCCeeEEE
Confidence 588 568999954
Done!