Query 041378
Match_columns 145
No_of_seqs 105 out of 1082
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 06:29:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041378.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041378hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10743 heat shock protein Ib 99.9 1.2E-26 2.6E-31 162.9 12.2 124 8-143 5-137 (137)
2 PRK11597 heat shock chaperone 99.9 2.3E-26 5.1E-31 162.0 11.9 98 44-144 30-136 (142)
3 COG0071 IbpA Molecular chapero 99.9 3.9E-25 8.5E-30 157.0 12.4 99 44-143 38-146 (146)
4 PF00011 HSP20: Hsp20/alpha cr 99.9 2.5E-21 5.5E-26 129.2 11.4 94 50-143 1-102 (102)
5 cd06472 ACD_ScHsp26_like Alpha 99.9 1.5E-21 3.2E-26 128.5 10.1 81 48-128 1-92 (92)
6 cd06471 ACD_LpsHSP_like Group 99.8 1.2E-20 2.6E-25 124.3 9.9 81 47-128 1-93 (93)
7 cd06470 ACD_IbpA-B_like Alpha- 99.8 9.3E-20 2E-24 119.5 10.6 80 47-128 1-90 (90)
8 cd06497 ACD_alphaA-crystallin_ 99.8 2.2E-19 4.7E-24 116.9 9.0 74 50-128 4-86 (86)
9 cd06478 ACD_HspB4-5-6 Alpha-cr 99.8 6.9E-19 1.5E-23 113.8 8.6 74 50-128 1-83 (83)
10 cd06498 ACD_alphaB-crystallin_ 99.8 9.9E-19 2.1E-23 113.3 8.9 74 51-129 2-84 (84)
11 cd06479 ACD_HspB7_like Alpha c 99.8 4.7E-19 1E-23 113.9 6.3 79 50-128 2-81 (81)
12 cd06476 ACD_HspB2_like Alpha c 99.8 3.7E-18 7.9E-23 110.3 8.5 73 51-128 2-83 (83)
13 cd06475 ACD_HspB1_like Alpha c 99.8 6.9E-18 1.5E-22 109.8 8.9 74 49-127 3-85 (86)
14 cd06464 ACD_sHsps-like Alpha-c 99.7 3.9E-17 8.6E-22 105.4 9.5 79 50-128 1-88 (88)
15 cd06481 ACD_HspB9_like Alpha c 99.7 3.6E-17 7.9E-22 106.6 7.7 72 54-128 5-87 (87)
16 cd06526 metazoan_ACD Alpha-cry 99.7 5E-17 1.1E-21 105.0 6.7 71 54-128 5-83 (83)
17 cd06477 ACD_HspB3_Like Alpha c 99.7 1.7E-16 3.7E-21 102.5 8.4 70 53-127 4-82 (83)
18 cd06482 ACD_HspB10 Alpha cryst 99.7 1.3E-16 2.8E-21 103.9 7.0 73 53-127 5-86 (87)
19 KOG0710 Molecular chaperone (s 99.5 1.1E-14 2.4E-19 108.0 6.4 102 41-143 79-193 (196)
20 KOG3591 Alpha crystallins [Pos 99.5 8.7E-14 1.9E-18 101.2 9.8 90 47-144 63-163 (173)
21 cd06480 ACD_HspB8_like Alpha-c 99.5 5.1E-14 1.1E-18 92.3 7.4 69 52-127 11-90 (91)
22 cd00298 ACD_sHsps_p23-like Thi 99.4 9.2E-12 2E-16 77.6 8.8 72 51-128 1-80 (80)
23 cd06469 p23_DYX1C1_like p23_li 99.2 3.1E-10 6.7E-15 71.9 8.4 70 51-130 1-70 (78)
24 PF05455 GvpH: GvpH; InterPro 99.0 7.7E-09 1.7E-13 74.9 10.2 77 46-130 91-169 (177)
25 cd06463 p23_like Proteins cont 98.8 5.9E-08 1.3E-12 61.3 8.8 73 52-130 2-75 (84)
26 cd06466 p23_CS_SGT1_like p23_l 98.7 2.2E-07 4.7E-12 59.4 7.9 75 50-130 1-76 (84)
27 PF04969 CS: CS domain; Inter 98.3 2.4E-05 5.1E-10 48.8 10.4 77 47-128 1-79 (79)
28 PF08190 PIH1: pre-RNA process 97.9 5.3E-05 1.1E-09 59.9 8.4 65 55-127 260-327 (328)
29 cd06465 p23_hB-ind1_like p23_l 97.9 0.00022 4.8E-09 47.8 9.5 77 47-130 1-78 (108)
30 cd06489 p23_CS_hSgt1_like p23_ 97.7 0.00048 1E-08 44.0 7.9 76 50-130 1-76 (84)
31 cd06467 p23_NUDC_like p23_like 97.5 0.0012 2.7E-08 41.9 8.6 74 49-130 1-76 (85)
32 cd06468 p23_CacyBP p23_like do 97.5 0.0022 4.8E-08 41.5 9.5 78 48-130 3-84 (92)
33 cd06488 p23_melusin_like p23_l 97.5 0.0024 5.2E-08 41.2 9.5 78 48-130 2-79 (87)
34 cd06493 p23_NUDCD1_like p23_NU 97.3 0.0066 1.4E-07 38.8 9.5 74 49-130 1-76 (85)
35 cd06494 p23_NUDCD2_like p23-li 96.8 0.023 5.1E-07 37.2 8.9 76 46-130 5-82 (93)
36 cd00237 p23 p23 binds heat sho 96.3 0.086 1.9E-06 35.3 9.6 77 47-130 2-78 (106)
37 cd06490 p23_NCB5OR p23_like do 96.3 0.15 3.2E-06 32.8 10.1 75 49-130 1-79 (87)
38 PLN03088 SGT1, suppressor of 96.1 0.05 1.1E-06 43.8 8.8 80 46-130 156-235 (356)
39 KOG1309 Suppressor of G2 allel 95.2 0.086 1.9E-06 38.6 6.1 79 46-129 3-81 (196)
40 cd06495 p23_NUDCD3_like p23-li 94.3 0.88 1.9E-05 30.3 9.0 78 46-129 4-85 (102)
41 cd06492 p23_mNUDC_like p23-lik 93.9 1 2.2E-05 28.9 8.9 73 50-130 2-78 (87)
42 cd06482 ACD_HspB10 Alpha cryst 85.2 2.3 4.9E-05 27.4 4.4 35 95-130 7-41 (87)
43 cd06476 ACD_HspB2_like Alpha c 84.7 2.5 5.5E-05 26.9 4.4 35 94-129 5-39 (83)
44 cd06470 ACD_IbpA-B_like Alpha- 84.5 4.5 9.8E-05 25.8 5.6 34 96-130 11-44 (90)
45 cd06471 ACD_LpsHSP_like Group 83.4 2.8 6.1E-05 26.8 4.3 35 95-130 9-43 (93)
46 cd06478 ACD_HspB4-5-6 Alpha-cr 82.8 3.4 7.5E-05 26.1 4.5 33 95-128 6-38 (83)
47 cd06477 ACD_HspB3_Like Alpha c 82.6 2.7 5.9E-05 26.8 3.9 34 96-130 7-40 (83)
48 cd06497 ACD_alphaA-crystallin_ 80.8 3.6 7.7E-05 26.3 4.0 33 95-128 9-41 (86)
49 cd06526 metazoan_ACD Alpha-cry 79.8 4.6 0.0001 25.3 4.3 34 96-130 7-40 (83)
50 PRK10743 heat shock protein Ib 79.6 8 0.00017 27.0 5.8 34 96-130 45-78 (137)
51 cd06472 ACD_ScHsp26_like Alpha 78.7 12 0.00026 23.8 6.1 35 95-130 8-43 (92)
52 cd06479 ACD_HspB7_like Alpha c 78.0 5.6 0.00012 25.2 4.2 33 96-129 8-40 (81)
53 PF00011 HSP20: Hsp20/alpha cr 76.6 8.4 0.00018 24.8 4.9 34 95-129 6-39 (102)
54 cd06498 ACD_alphaB-crystallin_ 75.8 6.2 0.00013 25.1 4.0 33 95-128 6-38 (84)
55 cd06481 ACD_HspB9_like Alpha c 75.2 12 0.00026 23.9 5.2 34 96-130 7-40 (87)
56 cd06475 ACD_HspB1_like Alpha c 74.2 7.5 0.00016 24.7 4.1 34 95-129 9-42 (86)
57 PRK11597 heat shock chaperone 73.2 14 0.0003 26.0 5.6 33 97-130 44-76 (142)
58 KOG1667 Zn2+-binding protein M 72.7 13 0.00029 28.9 5.7 83 45-131 213-295 (320)
59 PF01954 DUF104: Protein of un 70.7 5.4 0.00012 23.9 2.6 30 111-144 3-32 (60)
60 cd06464 ACD_sHsps-like Alpha-c 67.3 14 0.00031 22.5 4.3 34 96-130 7-40 (88)
61 PF14651 Lipocalin_7: Lipocali 67.2 32 0.00068 23.8 6.2 44 23-68 15-58 (128)
62 COG0071 IbpA Molecular chapero 66.6 24 0.00052 24.6 5.7 33 97-130 51-83 (146)
63 KOG2265 Nuclear distribution p 59.5 68 0.0015 23.6 8.4 77 43-129 15-95 (179)
64 cd01759 PLAT_PL PLAT/LH2 domai 59.1 53 0.0011 22.2 7.0 81 57-143 2-86 (113)
65 KOG3158 HSP90 co-chaperone p23 58.6 52 0.0011 24.1 6.2 80 43-130 4-84 (180)
66 cd06494 p23_NUDCD2_like p23-li 54.8 27 0.00058 22.6 3.9 33 95-127 14-46 (93)
67 cd06467 p23_NUDC_like p23_like 51.0 56 0.0012 20.0 5.6 32 96-127 8-39 (85)
68 KOG3413 Mitochondrial matrix p 48.8 8.9 0.00019 27.3 0.9 23 105-127 66-88 (156)
69 cd06493 p23_NUDCD1_like p23_NU 44.5 52 0.0011 20.5 4.0 32 96-127 8-39 (85)
70 cd00503 Frataxin Frataxin is a 43.5 24 0.00053 23.4 2.4 18 111-128 28-45 (105)
71 PF01491 Frataxin_Cyay: Fratax 42.4 32 0.00069 23.0 2.8 17 112-128 31-47 (109)
72 PRK00446 cyaY frataxin-like pr 39.8 26 0.00057 23.3 2.1 16 113-128 29-44 (105)
73 TIGR03421 FeS_CyaY iron donor 39.8 25 0.00054 23.3 2.0 16 113-128 27-42 (102)
74 PF14814 UB2H: Bifunctional tr 38.8 65 0.0014 20.3 3.8 44 83-126 28-73 (85)
75 KOG3260 Calcyclin-binding prot 38.0 1.3E+02 0.0028 22.4 5.5 76 48-128 76-152 (224)
76 TIGR03422 mito_frataxin fratax 37.2 23 0.0005 23.3 1.5 15 114-128 30-44 (97)
77 PF14730 DUF4468: Domain of un 35.6 87 0.0019 19.9 4.0 17 112-128 69-85 (91)
78 PLN02711 Probable galactinol-- 30.1 81 0.0018 28.5 4.0 45 96-143 732-776 (777)
79 PF14913 DPCD: DPCD protein fa 24.1 3.1E+02 0.0067 20.5 8.8 70 52-128 92-168 (194)
80 PF14014 DUF4230: Protein of u 22.7 58 0.0013 22.6 1.6 33 98-130 42-79 (157)
81 PF12992 DUF3876: Domain of un 22.1 1.4E+02 0.003 19.5 3.2 25 42-66 21-45 (95)
82 PRK01379 cyaY frataxin-like pr 21.5 82 0.0018 20.9 2.0 15 113-127 30-44 (103)
83 cd06407 PB1_NLP A PB1 domain i 21.3 79 0.0017 20.0 1.9 17 112-128 2-18 (82)
84 PF08300 HCV_NS5a_1a: Hepatiti 21.0 1.4E+02 0.003 18.0 2.7 18 112-129 29-46 (62)
85 COG2880 Uncharacterized protei 20.6 9.5 0.00021 23.4 -2.4 12 113-124 7-18 (67)
86 COG1965 CyaY Protein implicate 20.5 87 0.0019 21.0 2.0 16 113-128 30-45 (106)
87 PF03681 UPF0150: Uncharacteri 20.3 1.2E+02 0.0026 16.5 2.3 19 50-68 5-25 (48)
No 1
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.94 E-value=1.2e-26 Score=162.91 Aligned_cols=124 Identities=15% Similarity=0.203 Sum_probs=96.1
Q ss_pred CCChhhHHHHHhcccHHHHHHhhcCCccccccccccccCCcceEEE-cCCeEEEEEECCCCCCcceeEEe--------cc
Q 041378 8 EGYAEGAEQHAGGDKPEEMEKMLQQPGRRYVKNARAILRTPADIYE-DPSHYSFILDMPGLEASNIKKKK--------GQ 78 (145)
Q Consensus 8 ~~~p~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~p~~~v~e-~~~~~~i~~~lpG~~~e~i~V~~--------~~ 78 (145)
++.||..+...++++|++|.+.+..+ ....|++||++ ++++|+|.++|||++++||+|.. .+
T Consensus 5 ~~~~~~~~~~~~d~lf~~~~~~~~~~---------~~~~p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge 75 (137)
T PRK10743 5 DLSPLYRSAIGFDRLFNLLENNQSQS---------NGGYPPYNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKGA 75 (137)
T ss_pred ccChhhhcccCHHHHhhhhhhhhhcc---------cCCCCcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECCEEEEEEE
Confidence 45666677777777888777654421 11238999995 88999999999999999999921 11
Q ss_pred cccccCcceEEEEeeecceEEEEEECCCCCccCCceEEEeCCEEEEEEeCcCCCCCCCCeeEEec
Q 041378 79 SAENEGAVKAIRIERRRARNMRKFTLPQDSNLEEVKAIYKDGVLTVTVAKKVPEVSRRPKTVTIP 143 (145)
Q Consensus 79 ~~~~~~~~~~~~~e~~~~~f~r~i~LP~~vd~~~i~A~~~~GvL~I~~pK~~~~~~~~~~~I~I~ 143 (145)
.....++..++++|+.+++|+|+|.||++||.++ |+|+||||+|++||.. ++..++++|+|+
T Consensus 76 ~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~--A~~~dGVL~I~lPK~~-~~~~~~r~I~I~ 137 (137)
T PRK10743 76 HADEQKERTYLYQGIAERNFERKFQLAENIHVRG--ANLVNGLLYIDLERVI-PEAKKPRRIEIN 137 (137)
T ss_pred ECccccCCcEEEEEEECCEEEEEEECCCCcccCc--CEEeCCEEEEEEeCCC-ccccCCeEEeeC
Confidence 1113345678999999999999999999999994 9999999999999964 345578999885
No 2
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.94 E-value=2.3e-26 Score=162.04 Aligned_cols=98 Identities=18% Similarity=0.317 Sum_probs=81.3
Q ss_pred ccCCcceEEEc-CCeEEEEEECCCCCCcceeEEe--------cccccccCcceEEEEeeecceEEEEEECCCCCccCCce
Q 041378 44 ILRTPADIYED-PSHYSFILDMPGLEASNIKKKK--------GQSAENEGAVKAIRIERRRARNMRKFTLPQDSNLEEVK 114 (145)
Q Consensus 44 ~~~p~~~v~e~-~~~~~i~~~lpG~~~e~i~V~~--------~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~vd~~~i~ 114 (145)
...|++||+++ +++|+|.++|||+++++|+|.. .+.....++..++++|+.+++|+|+|.||++||.+ +
T Consensus 30 ~~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~ 107 (142)
T PRK11597 30 QSFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--G 107 (142)
T ss_pred CCCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--c
Confidence 34589999984 6799999999999999999921 11112345678999999999999999999999998 6
Q ss_pred EEEeCCEEEEEEeCcCCCCCCCCeeEEecc
Q 041378 115 AIYKDGVLTVTVAKKVPEVSRRPKTVTIPV 144 (145)
Q Consensus 115 A~~~~GvL~I~~pK~~~~~~~~~~~I~I~v 144 (145)
|+|+||||+|++||.. ++.+++++|+|+-
T Consensus 108 A~~~nGVL~I~lPK~~-~~~~~~rkI~I~~ 136 (142)
T PRK11597 108 ATFVNGLLHIDLIRNE-PEAIAPQRIAISE 136 (142)
T ss_pred CEEcCCEEEEEEeccC-ccccCCcEEEECC
Confidence 9999999999999965 3456789999974
No 3
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.9e-25 Score=157.02 Aligned_cols=99 Identities=32% Similarity=0.522 Sum_probs=84.8
Q ss_pred ccCCcceEEEcCCeEEEEEECCCCCCcceeEEe----------cccccccCcceEEEEeeecceEEEEEECCCCCccCCc
Q 041378 44 ILRTPADIYEDPSHYSFILDMPGLEASNIKKKK----------GQSAENEGAVKAIRIERRRARNMRKFTLPQDSNLEEV 113 (145)
Q Consensus 44 ~~~p~~~v~e~~~~~~i~~~lpG~~~e~i~V~~----------~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~vd~~~i 113 (145)
.+.|++||++++++|+|.++||||++++|+|.. +......+...++++++.++.|.|+|.||+.|+.+.+
T Consensus 38 ~~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~ 117 (146)
T COG0071 38 TGTPPVDIEETDDEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVI 117 (146)
T ss_pred CCCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccce
Confidence 578999999999999999999999999999921 1111244677899999999999999999999999999
Q ss_pred eEEEeCCEEEEEEeCcCCCCCCCCeeEEec
Q 041378 114 KAIYKDGVLTVTVAKKVPEVSRRPKTVTIP 143 (145)
Q Consensus 114 ~A~~~~GvL~I~~pK~~~~~~~~~~~I~I~ 143 (145)
+|+|+||+|+|++||..+ ++.++++|+|+
T Consensus 118 ~A~~~nGvL~I~lpk~~~-~~~~~~~i~I~ 146 (146)
T COG0071 118 KAKYKNGLLTVTLPKAEP-EEKKPKRIEIE 146 (146)
T ss_pred eeEeeCcEEEEEEecccc-ccccCceeecC
Confidence 999999999999999774 33567888874
No 4
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.87 E-value=2.5e-21 Score=129.23 Aligned_cols=94 Identities=37% Similarity=0.587 Sum_probs=71.4
Q ss_pred eEEEcCCeEEEEEECCCCCCcceeEEecc--------cccccCcceEEEEeeecceEEEEEECCCCCccCCceEEEeCCE
Q 041378 50 DIYEDPSHYSFILDMPGLEASNIKKKKGQ--------SAENEGAVKAIRIERRRARNMRKFTLPQDSNLEEVKAIYKDGV 121 (145)
Q Consensus 50 ~v~e~~~~~~i~~~lpG~~~e~i~V~~~~--------~~~~~~~~~~~~~e~~~~~f~r~i~LP~~vd~~~i~A~~~~Gv 121 (145)
||.+++++|.|.++||||++++|+|...+ ......+..+...++..+.|.|+|.||+.+|.++++|.|+||+
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~Gv 80 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYENGV 80 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETTSE
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecCCE
Confidence 68999999999999999999999992211 1113445677777888999999999999999999999999999
Q ss_pred EEEEEeCcCCCCCCCCeeEEec
Q 041378 122 LTVTVAKKVPEVSRRPKTVTIP 143 (145)
Q Consensus 122 L~I~~pK~~~~~~~~~~~I~I~ 143 (145)
|+|++||..+.+...+++|+|+
T Consensus 81 L~I~~pk~~~~~~~~~~~I~I~ 102 (102)
T PF00011_consen 81 LTITIPKKEEEEDSQPKRIPIK 102 (102)
T ss_dssp EEEEEEBSSSCTTSSSCEE-ET
T ss_pred EEEEEEccccccCCCCeEEEeC
Confidence 9999999876544578899885
No 5
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.87 E-value=1.5e-21 Score=128.48 Aligned_cols=81 Identities=36% Similarity=0.570 Sum_probs=70.0
Q ss_pred cceEEEcCCeEEEEEECCCCCCcceeEEeccc-----------ccccCcceEEEEeeecceEEEEEECCCCCccCCceEE
Q 041378 48 PADIYEDPSHYSFILDMPGLEASNIKKKKGQS-----------AENEGAVKAIRIERRRARNMRKFTLPQDSNLEEVKAI 116 (145)
Q Consensus 48 ~~~v~e~~~~~~i~~~lpG~~~e~i~V~~~~~-----------~~~~~~~~~~~~e~~~~~f~r~i~LP~~vd~~~i~A~ 116 (145)
++||+|++++|+|.++|||+++++|+|...+. .....+..+++.++.+++|.|+|.||.+|+.+.++|.
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~ 80 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF 80 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence 47899999999999999999999999943211 0123456788889999999999999999999999999
Q ss_pred EeCCEEEEEEeC
Q 041378 117 YKDGVLTVTVAK 128 (145)
Q Consensus 117 ~~~GvL~I~~pK 128 (145)
|+||+|+|++||
T Consensus 81 ~~nGvL~I~lPK 92 (92)
T cd06472 81 LENGVLTVTVPK 92 (92)
T ss_pred EECCEEEEEecC
Confidence 999999999997
No 6
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.85 E-value=1.2e-20 Score=124.27 Aligned_cols=81 Identities=35% Similarity=0.501 Sum_probs=68.3
Q ss_pred CcceEEEcCCeEEEEEECCCCCCcceeEEecc--------cc----cccCcceEEEEeeecceEEEEEECCCCCccCCce
Q 041378 47 TPADIYEDPSHYSFILDMPGLEASNIKKKKGQ--------SA----ENEGAVKAIRIERRRARNMRKFTLPQDSNLEEVK 114 (145)
Q Consensus 47 p~~~v~e~~~~~~i~~~lpG~~~e~i~V~~~~--------~~----~~~~~~~~~~~e~~~~~f~r~i~LP~~vd~~~i~ 114 (145)
+++||+++++.|+|.++|||+++++|+|...+ .. .......++++++.+++|+|.|.|| +++.+.++
T Consensus 1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~ 79 (93)
T cd06471 1 MKTDIKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIK 79 (93)
T ss_pred CceeEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCE
Confidence 36899999999999999999999999992111 10 0122346888999999999999999 79999999
Q ss_pred EEEeCCEEEEEEeC
Q 041378 115 AIYKDGVLTVTVAK 128 (145)
Q Consensus 115 A~~~~GvL~I~~pK 128 (145)
|+|+||+|+|++||
T Consensus 80 A~~~dGvL~I~lPK 93 (93)
T cd06471 80 AKYENGVLKITLPK 93 (93)
T ss_pred EEEECCEEEEEEcC
Confidence 99999999999997
No 7
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.83 E-value=9.3e-20 Score=119.54 Aligned_cols=80 Identities=16% Similarity=0.328 Sum_probs=67.1
Q ss_pred CcceEEEcC-CeEEEEEECCCCCCcceeEEecc---------cccccCcceEEEEeeecceEEEEEECCCCCccCCceEE
Q 041378 47 TPADIYEDP-SHYSFILDMPGLEASNIKKKKGQ---------SAENEGAVKAIRIERRRARNMRKFTLPQDSNLEEVKAI 116 (145)
Q Consensus 47 p~~~v~e~~-~~~~i~~~lpG~~~e~i~V~~~~---------~~~~~~~~~~~~~e~~~~~f~r~i~LP~~vd~~~i~A~ 116 (145)
|+++|++++ +.|+|.++|||+++++|+|...+ .........++++++.+++|.|+|.||.++|.. +|+
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A~ 78 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GAE 78 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--eeE
Confidence 689999976 89999999999999999992111 011225568888999999999999999999875 899
Q ss_pred EeCCEEEEEEeC
Q 041378 117 YKDGVLTVTVAK 128 (145)
Q Consensus 117 ~~~GvL~I~~pK 128 (145)
|+||+|+|++|+
T Consensus 79 ~~~GvL~I~l~~ 90 (90)
T cd06470 79 LENGLLTIDLER 90 (90)
T ss_pred EeCCEEEEEEEC
Confidence 999999999985
No 8
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.81 E-value=2.2e-19 Score=116.88 Aligned_cols=74 Identities=19% Similarity=0.335 Sum_probs=59.9
Q ss_pred eEEEcCCeEEEEEECCCCCCcceeEEecc-------cc-cccCcceEEEEeeecceEEEEEECCCCCccCCceEEE-eCC
Q 041378 50 DIYEDPSHYSFILDMPGLEASNIKKKKGQ-------SA-ENEGAVKAIRIERRRARNMRKFTLPQDSNLEEVKAIY-KDG 120 (145)
Q Consensus 50 ~v~e~~~~~~i~~~lpG~~~e~i~V~~~~-------~~-~~~~~~~~~~~e~~~~~f~r~i~LP~~vd~~~i~A~~-~~G 120 (145)
+|++++++|.|.++||||++++|+|...+ .. ...++..+.++ .|+|+|.||++||.++|+|+| +||
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~-----ef~R~~~LP~~Vd~~~i~A~~~~dG 78 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISR-----EFHRRYRLPSNVDQSAITCSLSADG 78 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEE-----EEEEEEECCCCCChHHeEEEeCCCC
Confidence 78999999999999999999999992211 11 11223344443 499999999999999999999 899
Q ss_pred EEEEEEeC
Q 041378 121 VLTVTVAK 128 (145)
Q Consensus 121 vL~I~~pK 128 (145)
+|+|++||
T Consensus 79 vL~I~~PK 86 (86)
T cd06497 79 MLTFSGPK 86 (86)
T ss_pred EEEEEecC
Confidence 99999997
No 9
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.79 E-value=6.9e-19 Score=113.81 Aligned_cols=74 Identities=20% Similarity=0.307 Sum_probs=58.5
Q ss_pred eEEEcCCeEEEEEECCCCCCcceeEEeccc-------c-cccCcceEEEEeeecceEEEEEECCCCCccCCceEEE-eCC
Q 041378 50 DIYEDPSHYSFILDMPGLEASNIKKKKGQS-------A-ENEGAVKAIRIERRRARNMRKFTLPQDSNLEEVKAIY-KDG 120 (145)
Q Consensus 50 ~v~e~~~~~~i~~~lpG~~~e~i~V~~~~~-------~-~~~~~~~~~~~e~~~~~f~r~i~LP~~vd~~~i~A~~-~~G 120 (145)
+|.+++++|.|.++||||++++|+|...+. . ...++..++++ .|+|+|.||.+||.++|+|+| +||
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~-----ef~R~~~LP~~vd~~~i~A~~~~dG 75 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQDEHGFISR-----EFHRRYRLPPGVDPAAITSSLSADG 75 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEE-----EEEEEEECCCCcChHHeEEEECCCC
Confidence 467899999999999999999999932111 1 11222334433 499999999999999999999 699
Q ss_pred EEEEEEeC
Q 041378 121 VLTVTVAK 128 (145)
Q Consensus 121 vL~I~~pK 128 (145)
+|+|++||
T Consensus 76 vL~I~~PK 83 (83)
T cd06478 76 VLTISGPR 83 (83)
T ss_pred EEEEEecC
Confidence 99999997
No 10
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.79 E-value=9.9e-19 Score=113.28 Aligned_cols=74 Identities=24% Similarity=0.319 Sum_probs=58.1
Q ss_pred EEEcCCeEEEEEECCCCCCcceeEEecc-------cc-cccCcceEEEEeeecceEEEEEECCCCCccCCceEEEe-CCE
Q 041378 51 IYEDPSHYSFILDMPGLEASNIKKKKGQ-------SA-ENEGAVKAIRIERRRARNMRKFTLPQDSNLEEVKAIYK-DGV 121 (145)
Q Consensus 51 v~e~~~~~~i~~~lpG~~~e~i~V~~~~-------~~-~~~~~~~~~~~e~~~~~f~r~i~LP~~vd~~~i~A~~~-~Gv 121 (145)
+..++++|.|.++||||++++|+|...+ .. ...++..+++ +.|+|+|.||++||.++|+|+|+ ||+
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~-----~eF~R~~~LP~~vd~~~i~A~~~~dGv 76 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQDEHGFIS-----REFQRKYRIPADVDPLTITSSLSPDGV 76 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEE-----EEEEEEEECCCCCChHHcEEEeCCCCE
Confidence 5678899999999999999999992211 10 1122333443 35999999999999999999995 999
Q ss_pred EEEEEeCc
Q 041378 122 LTVTVAKK 129 (145)
Q Consensus 122 L~I~~pK~ 129 (145)
|+|++||+
T Consensus 77 L~I~lPk~ 84 (84)
T cd06498 77 LTVCGPRK 84 (84)
T ss_pred EEEEEeCC
Confidence 99999984
No 11
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.78 E-value=4.7e-19 Score=113.93 Aligned_cols=79 Identities=19% Similarity=0.249 Sum_probs=59.5
Q ss_pred eEEEcCCeEEEEEECCCCCCcceeEEecccccccCcceEEEEeeecceEEEEEECCCCCccCCceEEE-eCCEEEEEEeC
Q 041378 50 DIYEDPSHYSFILDMPGLEASNIKKKKGQSAENEGAVKAIRIERRRARNMRKFTLPQDSNLEEVKAIY-KDGVLTVTVAK 128 (145)
Q Consensus 50 ~v~e~~~~~~i~~~lpG~~~e~i~V~~~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~vd~~~i~A~~-~~GvL~I~~pK 128 (145)
+|.+++++|.|.++||||+|++|+|...+..-.-.+..-......+++|+|+|.||.+||.++++|+| +||+|+|++++
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~~ 81 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKARR 81 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEecC
Confidence 68899999999999999999999993322100000000000012468999999999999999999998 99999999985
No 12
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.76 E-value=3.7e-18 Score=110.35 Aligned_cols=73 Identities=18% Similarity=0.307 Sum_probs=57.1
Q ss_pred EEEcCCeEEEEEECCCCCCcceeEEeccc-------c-cccCcceEEEEeeecceEEEEEECCCCCccCCceEEEe-CCE
Q 041378 51 IYEDPSHYSFILDMPGLEASNIKKKKGQS-------A-ENEGAVKAIRIERRRARNMRKFTLPQDSNLEEVKAIYK-DGV 121 (145)
Q Consensus 51 v~e~~~~~~i~~~lpG~~~e~i~V~~~~~-------~-~~~~~~~~~~~e~~~~~f~r~i~LP~~vd~~~i~A~~~-~Gv 121 (145)
+..++++|.|.++||||++++|+|...+. . ...+...+. .+.|+|+|.||.+||.++|+|+|+ ||+
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~-----~~eF~R~~~LP~~vd~~~v~A~~~~dGv 76 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRMDRHGFV-----SREFTRTYILPMDVDPLLVRASLSHDGI 76 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEcceecCCCEE-----EEEEEEEEECCCCCChhhEEEEecCCCE
Confidence 46788999999999999999999922111 0 111222233 345999999999999999999995 999
Q ss_pred EEEEEeC
Q 041378 122 LTVTVAK 128 (145)
Q Consensus 122 L~I~~pK 128 (145)
|+|++||
T Consensus 77 L~I~~Pr 83 (83)
T cd06476 77 LCIQAPR 83 (83)
T ss_pred EEEEecC
Confidence 9999997
No 13
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.75 E-value=6.9e-18 Score=109.79 Aligned_cols=74 Identities=22% Similarity=0.341 Sum_probs=58.9
Q ss_pred ceEEEcCCeEEEEEECCCCCCcceeEEecc-------ccc-ccCcceEEEEeeecceEEEEEECCCCCccCCceEEEe-C
Q 041378 49 ADIYEDPSHYSFILDMPGLEASNIKKKKGQ-------SAE-NEGAVKAIRIERRRARNMRKFTLPQDSNLEEVKAIYK-D 119 (145)
Q Consensus 49 ~~v~e~~~~~~i~~~lpG~~~e~i~V~~~~-------~~~-~~~~~~~~~~e~~~~~f~r~i~LP~~vd~~~i~A~~~-~ 119 (145)
.+|+++++.|.|.++||||++++|+|...+ ... ......+. .++|+|+|.||.+||.++++|+|+ |
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~-----~~~f~R~f~LP~~vd~~~v~A~~~~d 77 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQDEHGFV-----SRCFTRKYTLPPGVDPTAVTSSLSPD 77 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCcCCCCEE-----EEEEEEEEECCCCCCHHHcEEEECCC
Confidence 589999999999999999999999992211 111 11122222 358999999999999999999997 9
Q ss_pred CEEEEEEe
Q 041378 120 GVLTVTVA 127 (145)
Q Consensus 120 GvL~I~~p 127 (145)
|+|+|++|
T Consensus 78 GvL~I~lP 85 (86)
T cd06475 78 GILTVEAP 85 (86)
T ss_pred CeEEEEec
Confidence 99999998
No 14
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.73 E-value=3.9e-17 Score=105.40 Aligned_cols=79 Identities=34% Similarity=0.570 Sum_probs=64.6
Q ss_pred eEEEcCCeEEEEEECCCCCCcceeEEeccc---------ccccCcceEEEEeeecceEEEEEECCCCCccCCceEEEeCC
Q 041378 50 DIYEDPSHYSFILDMPGLEASNIKKKKGQS---------AENEGAVKAIRIERRRARNMRKFTLPQDSNLEEVKAIYKDG 120 (145)
Q Consensus 50 ~v~e~~~~~~i~~~lpG~~~e~i~V~~~~~---------~~~~~~~~~~~~e~~~~~f~r~i~LP~~vd~~~i~A~~~~G 120 (145)
++++++++|.|.++||||++++|+|...+. ........+...++.++.|.|+|.||..+|.+.++|.|+||
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~G 80 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLENG 80 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeCC
Confidence 468899999999999999999999932221 00111124566778899999999999999999999999999
Q ss_pred EEEEEEeC
Q 041378 121 VLTVTVAK 128 (145)
Q Consensus 121 vL~I~~pK 128 (145)
+|+|++||
T Consensus 81 ~L~I~~pk 88 (88)
T cd06464 81 VLTITLPK 88 (88)
T ss_pred EEEEEEcC
Confidence 99999997
No 15
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.71 E-value=3.6e-17 Score=106.61 Aligned_cols=72 Identities=15% Similarity=0.257 Sum_probs=56.1
Q ss_pred cCCeEEEEEECCCCCCcceeEEecc----------cccccCcceEEEEeeecceEEEEEECCCCCccCCceEEE-eCCEE
Q 041378 54 DPSHYSFILDMPGLEASNIKKKKGQ----------SAENEGAVKAIRIERRRARNMRKFTLPQDSNLEEVKAIY-KDGVL 122 (145)
Q Consensus 54 ~~~~~~i~~~lpG~~~e~i~V~~~~----------~~~~~~~~~~~~~e~~~~~f~r~i~LP~~vd~~~i~A~~-~~GvL 122 (145)
-.+.|.|.++||||++++|+|.... .........+. +.+++|+|+|.||++||.+.|+|.| +||+|
T Consensus 5 ~~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~---~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL 81 (87)
T cd06481 5 GKEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFS---YEYQEFVREAQLPEHVDPEAVTCSLSPSGHL 81 (87)
T ss_pred ccceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeecccCCCcEE---EEeeEEEEEEECCCCcChHHeEEEeCCCceE
Confidence 3569999999999999999992211 11111222332 3478999999999999999999999 99999
Q ss_pred EEEEeC
Q 041378 123 TVTVAK 128 (145)
Q Consensus 123 ~I~~pK 128 (145)
+|++|+
T Consensus 82 ~I~~P~ 87 (87)
T cd06481 82 HIRAPR 87 (87)
T ss_pred EEEcCC
Confidence 999995
No 16
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.70 E-value=5e-17 Score=104.97 Aligned_cols=71 Identities=23% Similarity=0.403 Sum_probs=55.3
Q ss_pred cCCeEEEEEECCCCCCcceeEEecccc-------cccCcceEEEEeeecceEEEEEECCCCCccCCceEEEeC-CEEEEE
Q 041378 54 DPSHYSFILDMPGLEASNIKKKKGQSA-------ENEGAVKAIRIERRRARNMRKFTLPQDSNLEEVKAIYKD-GVLTVT 125 (145)
Q Consensus 54 ~~~~~~i~~~lpG~~~e~i~V~~~~~~-------~~~~~~~~~~~e~~~~~f~r~i~LP~~vd~~~i~A~~~~-GvL~I~ 125 (145)
.+++|.|.++||||++++|+|...+.. ..... ...+.+++|.|+|.||..||.++++|.|.| |+|+|+
T Consensus 5 ~~~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~----~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~ 80 (83)
T cd06526 5 DDEKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEERED----EHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIE 80 (83)
T ss_pred cCeeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeecc----CCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEE
Confidence 346999999999999999999332210 01111 112346789999999999999999999998 999999
Q ss_pred EeC
Q 041378 126 VAK 128 (145)
Q Consensus 126 ~pK 128 (145)
+||
T Consensus 81 ~Pk 83 (83)
T cd06526 81 APK 83 (83)
T ss_pred ecC
Confidence 997
No 17
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.69 E-value=1.7e-16 Score=102.46 Aligned_cols=70 Identities=19% Similarity=0.308 Sum_probs=54.3
Q ss_pred EcCCeEEEEEECCCCCCcceeEEecc-------cc-cccCcceEEEEeeecceEEEEEECCCCCccCCceEEE-eCCEEE
Q 041378 53 EDPSHYSFILDMPGLEASNIKKKKGQ-------SA-ENEGAVKAIRIERRRARNMRKFTLPQDSNLEEVKAIY-KDGVLT 123 (145)
Q Consensus 53 e~~~~~~i~~~lpG~~~e~i~V~~~~-------~~-~~~~~~~~~~~e~~~~~f~r~i~LP~~vd~~~i~A~~-~~GvL~ 123 (145)
+++++|+|.++||||++++|+|...+ .. ...+...+. .++|+|+|.||.+|+.++|+|+| +||+|+
T Consensus 4 e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~-----~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~ 78 (83)
T cd06477 4 EGKPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFI-----SRSFTRQYQLPDGVEHKDLSAMLCHDGILV 78 (83)
T ss_pred cCCceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccccCCCCEE-----EEEEEEEEECCCCcchheEEEEEcCCCEEE
Confidence 56789999999999999999992211 11 111222332 34899999999999999999998 899999
Q ss_pred EEEe
Q 041378 124 VTVA 127 (145)
Q Consensus 124 I~~p 127 (145)
|+.|
T Consensus 79 I~~~ 82 (83)
T cd06477 79 VETK 82 (83)
T ss_pred EEec
Confidence 9976
No 18
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.68 E-value=1.3e-16 Score=103.87 Aligned_cols=73 Identities=19% Similarity=0.246 Sum_probs=56.3
Q ss_pred EcCCeEEEEEECCCCCCcceeEEecc-------cc-cccCcceEEEEeeecceEEEEEECCCCCccCCceEEEeCC-EEE
Q 041378 53 EDPSHYSFILDMPGLEASNIKKKKGQ-------SA-ENEGAVKAIRIERRRARNMRKFTLPQDSNLEEVKAIYKDG-VLT 123 (145)
Q Consensus 53 e~~~~~~i~~~lpG~~~e~i~V~~~~-------~~-~~~~~~~~~~~e~~~~~f~r~i~LP~~vd~~~i~A~~~~G-vL~ 123 (145)
.++++|+|.++|||+++++|+|...+ ++ ...+.. -..++.+++|.|+|.||.+||.++|+|+|+|| +|+
T Consensus 5 ~~~~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~~~e~~--~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~ 82 (87)
T cd06482 5 CDSSNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCL--GSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVK 82 (87)
T ss_pred ccCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccC--CccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEE
Confidence 36789999999999999999992111 11 011111 12367889999999999999999999999766 999
Q ss_pred EEEe
Q 041378 124 VTVA 127 (145)
Q Consensus 124 I~~p 127 (145)
|..|
T Consensus 83 i~~~ 86 (87)
T cd06482 83 IETP 86 (87)
T ss_pred EeeC
Confidence 9987
No 19
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.1e-14 Score=108.01 Aligned_cols=102 Identities=35% Similarity=0.585 Sum_probs=80.3
Q ss_pred cccccCCcceEEEcCCeEEEEEECCCCCCcceeEEeccc-------------ccccCcceEEEEeeecceEEEEEECCCC
Q 041378 41 ARAILRTPADIYEDPSHYSFILDMPGLEASNIKKKKGQS-------------AENEGAVKAIRIERRRARNMRKFTLPQD 107 (145)
Q Consensus 41 ~~~~~~p~~~v~e~~~~~~i~~~lpG~~~e~i~V~~~~~-------------~~~~~~~~~~~~e~~~~~f~r~i~LP~~ 107 (145)
....+.++++|.+..+.|.+.++|||+..++|+|...+. .....+..+...++..+.|.|.+.||+.
T Consensus 79 ~~~~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPen 158 (196)
T KOG0710|consen 79 AKSEARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPEN 158 (196)
T ss_pred ccccccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCcc
Confidence 345677789999999999999999999999999932221 1112445677778899999999999999
Q ss_pred CccCCceEEEeCCEEEEEEeCcCCCCCCCCeeEEec
Q 041378 108 SNLEEVKAIYKDGVLTVTVAKKVPEVSRRPKTVTIP 143 (145)
Q Consensus 108 vd~~~i~A~~~~GvL~I~~pK~~~~~~~~~~~I~I~ 143 (145)
++.+.|+|.|.||+|.|++||..+.. .+.+...|.
T Consensus 159 v~~d~ikA~~~nGVL~VvvpK~~~~~-~~~~v~~i~ 193 (196)
T KOG0710|consen 159 VDVDEIKAEMENGVLTVVVPKLEPLL-KKPKVRQIA 193 (196)
T ss_pred ccHHHHHHHhhCCeEEEEEecccccc-cCCccceee
Confidence 99999999999999999999977531 233444443
No 20
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=8.7e-14 Score=101.17 Aligned_cols=90 Identities=24% Similarity=0.422 Sum_probs=72.2
Q ss_pred CcceEEEcCCeEEEEEECCCCCCcceeEE----------ecccccccCcceEEEEeeecceEEEEEECCCCCccCCceEE
Q 041378 47 TPADIYEDPSHYSFILDMPGLEASNIKKK----------KGQSAENEGAVKAIRIERRRARNMRKFTLPQDSNLEEVKAI 116 (145)
Q Consensus 47 p~~~v~e~~~~~~i~~~lpG~~~e~i~V~----------~~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~vd~~~i~A~ 116 (145)
...++..+.+.|.|.+|+..|+|++|+|. ++++ ..++..++. +.|.|++.||.+||+++|+++
T Consensus 63 ~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~~~l~V~gkHee--r~d~~G~v~-----R~F~R~y~LP~~vdp~~V~S~ 135 (173)
T KOG3591|consen 63 GASEIVNDKDKFEVNLDVHQFKPEELKVKTDDNTLEVEGKHEE--KEDEHGYVS-----RSFVRKYLLPEDVDPTSVTST 135 (173)
T ss_pred cccccccCCCcEEEEEEcccCcccceEEEeCCCEEEEEeeecc--ccCCCCeEE-----EEEEEEecCCCCCChhheEEe
Confidence 36678889999999999999999999993 2333 224445553 469999999999999999999
Q ss_pred E-eCCEEEEEEeCcCCCCCCCCeeEEecc
Q 041378 117 Y-KDGVLTVTVAKKVPEVSRRPKTVTIPV 144 (145)
Q Consensus 117 ~-~~GvL~I~~pK~~~~~~~~~~~I~I~v 144 (145)
+ .||+|+|++||..+... ..+.|+|+.
T Consensus 136 LS~dGvLtI~ap~~~~~~~-~er~ipI~~ 163 (173)
T KOG3591|consen 136 LSSDGVLTIEAPKPPPKQD-NERSIPIEQ 163 (173)
T ss_pred eCCCceEEEEccCCCCcCc-cceEEeEee
Confidence 9 69999999999764322 589999874
No 21
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.52 E-value=5.1e-14 Score=92.27 Aligned_cols=69 Identities=13% Similarity=0.245 Sum_probs=55.6
Q ss_pred EEcCCeEEEEEECCCCCCcceeEE----------ecccccccCcceEEEEeeecceEEEEEECCCCCccCCceEEEe-CC
Q 041378 52 YEDPSHYSFILDMPGLEASNIKKK----------KGQSAENEGAVKAIRIERRRARNMRKFTLPQDSNLEEVKAIYK-DG 120 (145)
Q Consensus 52 ~e~~~~~~i~~~lpG~~~e~i~V~----------~~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~vd~~~i~A~~~-~G 120 (145)
.+.+++|.|.+++.||++++|+|. +++. ......+. .+.|.|+|.||.+||.+.|+|.|. ||
T Consensus 11 ~~~~~~f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~--~~~e~g~~-----~r~F~R~~~LP~~Vd~~~v~s~l~~dG 83 (91)
T cd06480 11 PNSSEPWKVCVNVHSFKPEELTVKTKDGFVEVSGKHEE--QQKEGGIV-----SKNFTKKIQLPPEVDPVTVFASLSPEG 83 (91)
T ss_pred CCCCCcEEEEEEeCCCCHHHcEEEEECCEEEEEEEECc--ccCCCCEE-----EEEEEEEEECCCCCCchhEEEEeCCCC
Confidence 467789999999999999999992 2222 11222233 377999999999999999999996 99
Q ss_pred EEEEEEe
Q 041378 121 VLTVTVA 127 (145)
Q Consensus 121 vL~I~~p 127 (145)
+|+|++|
T Consensus 84 vL~IeaP 90 (91)
T cd06480 84 LLIIEAP 90 (91)
T ss_pred eEEEEcC
Confidence 9999998
No 22
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.35 E-value=9.2e-12 Score=77.61 Aligned_cols=72 Identities=32% Similarity=0.508 Sum_probs=58.9
Q ss_pred EEEcCCeEEEEEECCCCCCcceeEEecccccccCcceEEE--------EeeecceEEEEEECCCCCccCCceEEEeCCEE
Q 041378 51 IYEDPSHYSFILDMPGLEASNIKKKKGQSAENEGAVKAIR--------IERRRARNMRKFTLPQDSNLEEVKAIYKDGVL 122 (145)
Q Consensus 51 v~e~~~~~~i~~~lpG~~~e~i~V~~~~~~~~~~~~~~~~--------~e~~~~~f~r~i~LP~~vd~~~i~A~~~~GvL 122 (145)
++++++.|.|.+++||+.+++|.|...+. .-.+. .+...+.|.+.+.||..++.+.++|.+.+|+|
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~------~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l 74 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDN------VLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVL 74 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEECC------EEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEE
Confidence 46788999999999999999999954432 11111 12346789999999999999999999999999
Q ss_pred EEEEeC
Q 041378 123 TVTVAK 128 (145)
Q Consensus 123 ~I~~pK 128 (145)
.|.+||
T Consensus 75 ~i~l~K 80 (80)
T cd00298 75 EITLPK 80 (80)
T ss_pred EEEEcC
Confidence 999997
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.16 E-value=3.1e-10 Score=71.87 Aligned_cols=70 Identities=16% Similarity=0.146 Sum_probs=58.1
Q ss_pred EEEcCCeEEEEEECCCCCCcceeEEecccccccCcceEEEEeeecceEEEEEECCCCCccCCceEEEeCCEEEEEEeCcC
Q 041378 51 IYEDPSHYSFILDMPGLEASNIKKKKGQSAENEGAVKAIRIERRRARNMRKFTLPQDSNLEEVKAIYKDGVLTVTVAKKV 130 (145)
Q Consensus 51 v~e~~~~~~i~~~lpG~~~e~i~V~~~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~vd~~~i~A~~~~GvL~I~~pK~~ 130 (145)
++++++.+.|++++||+++++++|..... ... . ....|.+.+.||..|+++..+|++.+|.|.|+++|..
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~~-------~l~-i--~~~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~~ 70 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSDL-------YLK-V--NFPPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKKE 70 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEecC-------EEE-E--cCCCEEEEEeCcccccccccEEEEeCCEEEEEEEeCC
Confidence 36889999999999999999999866443 111 1 1146999999999999999999999999999999954
No 24
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=98.98 E-value=7.7e-09 Score=74.93 Aligned_cols=77 Identities=19% Similarity=0.392 Sum_probs=58.8
Q ss_pred CCcceEEEcCC-eEEEEEECCCCCCcc-eeEEecccccccCcceEEEEeeecceEEEEEECCCCCccCCceEEEeCCEEE
Q 041378 46 RTPADIYEDPS-HYSFILDMPGLEASN-IKKKKGQSAENEGAVKAIRIERRRARNMRKFTLPQDSNLEEVKAIYKDGVLT 123 (145)
Q Consensus 46 ~p~~~v~e~~~-~~~i~~~lpG~~~e~-i~V~~~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~vd~~~i~A~~~~GvL~ 123 (145)
.+.+++.+..+ +++|.++|||+++++ |+|..... ...+.. ...+.|.+++.||.. +.+.++|+|.||||.
T Consensus 91 ~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d------~~~L~i-~~~~~~~krv~L~~~-~~e~~~~t~nNgILE 162 (177)
T PF05455_consen 91 SIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDD------EGALTI-RVGEKYLKRVALPWP-DPEITSATFNNGILE 162 (177)
T ss_pred eeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecC------CceEEE-ecCCceEeeEecCCC-ccceeeEEEeCceEE
Confidence 45678887666 799999999999888 99976543 111111 123457899999977 688889999999999
Q ss_pred EEEeCcC
Q 041378 124 VTVAKKV 130 (145)
Q Consensus 124 I~~pK~~ 130 (145)
|.+-+..
T Consensus 163 Iri~~~~ 169 (177)
T PF05455_consen 163 IRIRRTE 169 (177)
T ss_pred EEEeecC
Confidence 9998855
No 25
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=98.81 E-value=5.9e-08 Score=61.33 Aligned_cols=73 Identities=14% Similarity=0.153 Sum_probs=58.7
Q ss_pred EEcCCeEEEEEECCCCCCcceeEEecccccccCcceEEEEee-ecceEEEEEECCCCCccCCceEEEeCCEEEEEEeCcC
Q 041378 52 YEDPSHYSFILDMPGLEASNIKKKKGQSAENEGAVKAIRIER-RRARNMRKFTLPQDSNLEEVKAIYKDGVLTVTVAKKV 130 (145)
Q Consensus 52 ~e~~~~~~i~~~lpG~~~e~i~V~~~~~~~~~~~~~~~~~e~-~~~~f~r~i~LP~~vd~~~i~A~~~~GvL~I~~pK~~ 130 (145)
+++++.+.|.+.+||..++++.|...+. .-.+.... ..+.|...+.|+..|+++..++++.+|.|.|.++|..
T Consensus 2 ~Q~~~~v~i~v~~~~~~~~~~~v~~~~~------~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~ 75 (84)
T cd06463 2 YQTLDEVTITIPLKDVTKKDVKVEFTPK------SLTVSVKGGGGKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKKE 75 (84)
T ss_pred cccccEEEEEEEcCCCCccceEEEEecC------EEEEEeeCCCCCceEEeeEccCccchhhcEEEEeCCEEEEEEEECC
Confidence 5788999999999999999999966543 11111111 1367899999999999999999999999999999965
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.65 E-value=2.2e-07 Score=59.37 Aligned_cols=75 Identities=12% Similarity=0.121 Sum_probs=60.3
Q ss_pred eEEEcCCeEEEEEECCCCCCcceeEEecccccccCcceEEEEee-ecceEEEEEECCCCCccCCceEEEeCCEEEEEEeC
Q 041378 50 DIYEDPSHYSFILDMPGLEASNIKKKKGQSAENEGAVKAIRIER-RRARNMRKFTLPQDSNLEEVKAIYKDGVLTVTVAK 128 (145)
Q Consensus 50 ~v~e~~~~~~i~~~lpG~~~e~i~V~~~~~~~~~~~~~~~~~e~-~~~~f~r~i~LP~~vd~~~i~A~~~~GvL~I~~pK 128 (145)
|++++++.+.|.+.+||+.++++.|...+. .-.+.... ....|...+.|+..|+++..++.+.+|.|.|.|+|
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~------~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K 74 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQ------SLSVSIILPGGSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKK 74 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEecC------EEEEEEECCCCCeEEEecccccccCchhcEEEEeCeEEEEEEEc
Confidence 578999999999999999999999976553 11111111 13469999999999999999999999999999999
Q ss_pred cC
Q 041378 129 KV 130 (145)
Q Consensus 129 ~~ 130 (145)
..
T Consensus 75 ~~ 76 (84)
T cd06466 75 AE 76 (84)
T ss_pred CC
Confidence 54
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.30 E-value=2.4e-05 Score=48.80 Aligned_cols=77 Identities=12% Similarity=0.115 Sum_probs=58.4
Q ss_pred CcceEEEcCCeEEEEEECCCC--CCcceeEEecccccccCcceEEEEeeecceEEEEEECCCCCccCCceEEEeCCEEEE
Q 041378 47 TPADIYEDPSHYSFILDMPGL--EASNIKKKKGQSAENEGAVKAIRIERRRARNMRKFTLPQDSNLEEVKAIYKDGVLTV 124 (145)
Q Consensus 47 p~~~v~e~~~~~~i~~~lpG~--~~e~i~V~~~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~vd~~~i~A~~~~GvL~I 124 (145)
|.++++++.+.+.|.+.+++. .+++|.|...+.. -...........|...+.|...|+++..++.+.++.|.|
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~-----l~v~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~i~i 75 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTS-----LSVSIKSGDGKEYLLEGELFGEIDPDESTWKVKDNKIEI 75 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTE-----EEEEEEETTSCEEEEEEEBSS-BECCCEEEEEETTEEEE
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeE-----EEEEEEccCCceEEEEEEEeeeEcchhcEEEEECCEEEE
Confidence 578999999999999999665 5999999665541 111111111257888999999999999999999999999
Q ss_pred EEeC
Q 041378 125 TVAK 128 (145)
Q Consensus 125 ~~pK 128 (145)
+|.|
T Consensus 76 ~L~K 79 (79)
T PF04969_consen 76 TLKK 79 (79)
T ss_dssp EEEB
T ss_pred EEEC
Confidence 9986
No 28
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=97.95 E-value=5.3e-05 Score=59.90 Aligned_cols=65 Identities=23% Similarity=0.374 Sum_probs=52.5
Q ss_pred CCeEEEEEECCCC-CCcceeEEecccccccCcceEEEEeeecceEEEEEECCCCCccCCceEEE--eCCEEEEEEe
Q 041378 55 PSHYSFILDMPGL-EASNIKKKKGQSAENEGAVKAIRIERRRARNMRKFTLPQDSNLEEVKAIY--KDGVLTVTVA 127 (145)
Q Consensus 55 ~~~~~i~~~lpG~-~~e~i~V~~~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~vd~~~i~A~~--~~GvL~I~~p 127 (145)
.+.++|+++|||+ +..+|.+...+. ...+.. ....|...+.||..||.+..+|.| +.++|+|++|
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~~~------~l~l~~--~~~~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtlp 327 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVSED------RLSLSS--PKPKYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTLP 327 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEeCC------EEEEEe--CCCceEEEccCCCcccCCCceEEEccCCCEEEEEEE
Confidence 4689999999999 888999977665 222211 122689999999999999999999 4799999998
No 29
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=97.89 E-value=0.00022 Score=47.82 Aligned_cols=77 Identities=12% Similarity=0.077 Sum_probs=58.3
Q ss_pred CcceEEEcCCeEEEEEECCCCCCcceeEEecccccccCcceEEEEee-ecceEEEEEECCCCCccCCceEEEeCCEEEEE
Q 041378 47 TPADIYEDPSHYSFILDMPGLEASNIKKKKGQSAENEGAVKAIRIER-RRARNMRKFTLPQDSNLEEVKAIYKDGVLTVT 125 (145)
Q Consensus 47 p~~~v~e~~~~~~i~~~lpG~~~e~i~V~~~~~~~~~~~~~~~~~e~-~~~~f~r~i~LP~~vd~~~i~A~~~~GvL~I~ 125 (145)
|+++++++.+.+.|++.+||+ +++.|...+.. -....... ....|...+.|...|+++..++++.++.|.|+
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~~~-----l~v~~~~~~~~~~y~~~~~L~~~I~pe~s~~~v~~~kveI~ 73 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEPTS-----LSFKAKGGGGGKKYEFDLEFYKEIDPEESKYKVTGRQIEFV 73 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEECCE-----EEEEEEcCCCCeeEEEEeEhhhhccccccEEEecCCeEEEE
Confidence 578999999999999999998 66666443330 11111111 23448888899999999999999999999999
Q ss_pred EeCcC
Q 041378 126 VAKKV 130 (145)
Q Consensus 126 ~pK~~ 130 (145)
|.|..
T Consensus 74 L~K~~ 78 (108)
T cd06465 74 LRKKE 78 (108)
T ss_pred EEECC
Confidence 99965
No 30
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=97.66 E-value=0.00048 Score=44.01 Aligned_cols=76 Identities=11% Similarity=0.063 Sum_probs=58.1
Q ss_pred eEEEcCCeEEEEEECCCCCCcceeEEecccccccCcceEEEEeeecceEEEEEECCCCCccCCceEEEeCCEEEEEEeCc
Q 041378 50 DIYEDPSHYSFILDMPGLEASNIKKKKGQSAENEGAVKAIRIERRRARNMRKFTLPQDSNLEEVKAIYKDGVLTVTVAKK 129 (145)
Q Consensus 50 ~v~e~~~~~~i~~~lpG~~~e~i~V~~~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~vd~~~i~A~~~~GvL~I~~pK~ 129 (145)
|++++++.+.|++.++|+.++++.|...+.. -...........|.-.+.|...|++++.+.+...+-+.|.|.|.
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~~-----l~~~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~ 75 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEKRE-----LSATVKLPSGNDYSLKLHLLHPIVPEQSSYKILSTKIEIKLKKT 75 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeCCE-----EEEEEECCCCCcEEEeeecCceecchhcEEEEeCcEEEEEEEcC
Confidence 5788999999999999999999999765541 11111111123588889999999999888888899999999995
Q ss_pred C
Q 041378 130 V 130 (145)
Q Consensus 130 ~ 130 (145)
.
T Consensus 76 ~ 76 (84)
T cd06489 76 E 76 (84)
T ss_pred C
Confidence 3
No 31
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.54 E-value=0.0012 Score=41.92 Aligned_cols=74 Identities=12% Similarity=0.191 Sum_probs=55.2
Q ss_pred ceEEEcCCeEEEEEECC-CCCCcceeEEecccccccCcceEEEEeeecceEEEEEECCCCCccCCceEEEeC-CEEEEEE
Q 041378 49 ADIYEDPSHYSFILDMP-GLEASNIKKKKGQSAENEGAVKAIRIERRRARNMRKFTLPQDSNLEEVKAIYKD-GVLTVTV 126 (145)
Q Consensus 49 ~~v~e~~~~~~i~~~lp-G~~~e~i~V~~~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~vd~~~i~A~~~~-GvL~I~~ 126 (145)
+.++++++.+.|.+.+| ++.+++|+|...+. .-.+... .+.+.-.-.|...|+++..+..+.+ ..|.|++
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~------~l~v~~~--~~~~~l~~~L~~~I~~~~s~w~~~~~~~v~i~L 72 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPK------HLKVGVK--GGEPLLDGELYAKVKVDESTWTLEDGKLLEITL 72 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEcC------EEEEEEC--CCCceEcCcccCceeEcCCEEEEeCCCEEEEEE
Confidence 46789999999999998 78999999966543 1111111 1223344579999999998888988 9999999
Q ss_pred eCcC
Q 041378 127 AKKV 130 (145)
Q Consensus 127 pK~~ 130 (145)
+|..
T Consensus 73 ~K~~ 76 (85)
T cd06467 73 EKRN 76 (85)
T ss_pred EECC
Confidence 9954
No 32
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.50 E-value=0.0022 Score=41.46 Aligned_cols=78 Identities=13% Similarity=0.094 Sum_probs=58.1
Q ss_pred cceEEEcCCeEEEEEECCCCCC---cceeEEecccccccCcceEEEEeeecceEEEEEE-CCCCCccCCceEEEeCCEEE
Q 041378 48 PADIYEDPSHYSFILDMPGLEA---SNIKKKKGQSAENEGAVKAIRIERRRARNMRKFT-LPQDSNLEEVKAIYKDGVLT 123 (145)
Q Consensus 48 ~~~v~e~~~~~~i~~~lpG~~~---e~i~V~~~~~~~~~~~~~~~~~e~~~~~f~r~i~-LP~~vd~~~i~A~~~~GvL~ 123 (145)
.++++++++.+.|.+.+|+..+ ++++|...+.. -...........|.-.+. |-..|+++..+.....+-+.
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~-----l~v~~~~~~~~~~~~~~~~L~~~I~~e~s~~~~~~~ki~ 77 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERS-----FELKVHDLNGKNYRFTINRLLKKIDPEKSSFKVKTDRIV 77 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCE-----EEEEEECCCCcEEEEEehHhhCccCccccEEEEeCCEEE
Confidence 5789999999999999999976 89988654430 111111112234666665 99999999988889999999
Q ss_pred EEEeCcC
Q 041378 124 VTVAKKV 130 (145)
Q Consensus 124 I~~pK~~ 130 (145)
|.+.|..
T Consensus 78 i~L~K~~ 84 (92)
T cd06468 78 ITLAKKK 84 (92)
T ss_pred EEEEeCC
Confidence 9999954
No 33
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=97.49 E-value=0.0024 Score=41.16 Aligned_cols=78 Identities=8% Similarity=-0.057 Sum_probs=59.9
Q ss_pred cceEEEcCCeEEEEEECCCCCCcceeEEecccccccCcceEEEEeeecceEEEEEECCCCCccCCceEEEeCCEEEEEEe
Q 041378 48 PADIYEDPSHYSFILDMPGLEASNIKKKKGQSAENEGAVKAIRIERRRARNMRKFTLPQDSNLEEVKAIYKDGVLTVTVA 127 (145)
Q Consensus 48 ~~~v~e~~~~~~i~~~lpG~~~e~i~V~~~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~vd~~~i~A~~~~GvL~I~~p 127 (145)
.+|++++++.+.|++.+.|+.++++.|...+.. -.....-.....|...+.|-..|+++..+.....+-+.|.+.
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~~-----l~v~~~~~~~~~y~~~l~L~~~I~~~~s~~~v~~~kvei~L~ 76 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSNPELSVVEANSTV-----LTIHIVFEGNKEFQLDIELWGVIDVEKSSVNMLPTKVEIKLR 76 (87)
T ss_pred CccEeeCCCEEEEEEEECcCCccceEEEecCCE-----EEEEEECCCCceEEEEeeccceEChhHcEEEecCcEEEEEEE
Confidence 578999999999999999999999999765431 011000001235888899999999999777788999999999
Q ss_pred CcC
Q 041378 128 KKV 130 (145)
Q Consensus 128 K~~ 130 (145)
|..
T Consensus 77 K~~ 79 (87)
T cd06488 77 KAE 79 (87)
T ss_pred eCC
Confidence 954
No 34
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.26 E-value=0.0066 Score=38.85 Aligned_cols=74 Identities=16% Similarity=0.152 Sum_probs=53.6
Q ss_pred ceEEEcCCeEEEEEECC-CCCCcceeEEecccccccCcceEEEEeeecceEEEEEECCCCCccCCceEEEeCC-EEEEEE
Q 041378 49 ADIYEDPSHYSFILDMP-GLEASNIKKKKGQSAENEGAVKAIRIERRRARNMRKFTLPQDSNLEEVKAIYKDG-VLTVTV 126 (145)
Q Consensus 49 ~~v~e~~~~~~i~~~lp-G~~~e~i~V~~~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~vd~~~i~A~~~~G-vL~I~~ 126 (145)
++++++.+.+.|.+.+| |+.+++|+|...... ..... ..+...-.-.|...|+++.-+.++.+| .|.|.|
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~------l~v~~--~~~~~~~~g~L~~~I~~d~Stw~i~~~~~l~i~L 72 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDH------ISIAL--KDQAPLLEGKLYSSIDHESSTWIIKENKSLEVSL 72 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEecCE------EEEEe--CCCCeEEeCcccCcccccCcEEEEeCCCEEEEEE
Confidence 46789999999999996 999999999665431 11111 111112344799999999988788777 799999
Q ss_pred eCcC
Q 041378 127 AKKV 130 (145)
Q Consensus 127 pK~~ 130 (145)
.|..
T Consensus 73 ~K~~ 76 (85)
T cd06493 73 IKKD 76 (85)
T ss_pred EECC
Confidence 9964
No 35
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=96.78 E-value=0.023 Score=37.21 Aligned_cols=76 Identities=16% Similarity=0.130 Sum_probs=55.3
Q ss_pred CCcceEEEcCCeEEEEEECC-CCCCcceeEEecccccccCcceEEEEeeecceEEEEEECCCCCccCCceEEEeCCE-EE
Q 041378 46 RTPADIYEDPSHYSFILDMP-GLEASNIKKKKGQSAENEGAVKAIRIERRRARNMRKFTLPQDSNLEEVKAIYKDGV-LT 123 (145)
Q Consensus 46 ~p~~~v~e~~~~~~i~~~lp-G~~~e~i~V~~~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~vd~~~i~A~~~~Gv-L~ 123 (145)
.+.+.++++.+.+.|.+.|| |..+.||.|...... -..... ...+ -.=.|...|+++.-..++++|- |.
T Consensus 5 ~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~-----l~V~~~---g~~~-l~G~L~~~I~~destWtled~k~l~ 75 (93)
T cd06494 5 TPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRD-----ISLAVK---GQEV-LKGKLFDSVVADECTWTLEDRKLIR 75 (93)
T ss_pred CCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCE-----EEEEEC---CEEE-EcCcccCccCcccCEEEEECCcEEE
Confidence 45889999999999999999 899999999655431 011101 1111 1116899999999899998775 89
Q ss_pred EEEeCcC
Q 041378 124 VTVAKKV 130 (145)
Q Consensus 124 I~~pK~~ 130 (145)
|.|.|..
T Consensus 76 I~L~K~~ 82 (93)
T cd06494 76 IVLTKSN 82 (93)
T ss_pred EEEEeCC
Confidence 9999953
No 36
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=96.34 E-value=0.086 Score=35.34 Aligned_cols=77 Identities=9% Similarity=0.040 Sum_probs=54.0
Q ss_pred CcceEEEcCCeEEEEEECCCCCCcceeEEecccccccCcceEEEEeeecceEEEEEECCCCCccCCceEEEeCCEEEEEE
Q 041378 47 TPADIYEDPSHYSFILDMPGLEASNIKKKKGQSAENEGAVKAIRIERRRARNMRKFTLPQDSNLEEVKAIYKDGVLTVTV 126 (145)
Q Consensus 47 p~~~v~e~~~~~~i~~~lpG~~~e~i~V~~~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~vd~~~i~A~~~~GvL~I~~ 126 (145)
|+++++++.+.+.|++.+|+. ++++|...+.. -...........|.-.+.|-..|+++.-+.....--+.|.+
T Consensus 2 p~v~WaQr~~~V~ltI~v~d~--~d~~v~l~~~~-----l~f~~~~~~g~~y~~~l~l~~~I~pe~Sk~~v~~r~ve~~L 74 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVEDS--KDVKVDFEKSK-----LTFSCLNGDNVKIYNEIELYDRVDPNDSKHKRTDRSILCCL 74 (106)
T ss_pred CcceeeECCCEEEEEEEeCCC--CCcEEEEecCE-----EEEEEECCCCcEEEEEEEeecccCcccCeEEeCCceEEEEE
Confidence 688999999999999999995 56666444431 11111111223477788999999999866666667788899
Q ss_pred eCcC
Q 041378 127 AKKV 130 (145)
Q Consensus 127 pK~~ 130 (145)
.|+.
T Consensus 75 ~K~~ 78 (106)
T cd00237 75 RKGK 78 (106)
T ss_pred EeCC
Confidence 9865
No 37
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=96.27 E-value=0.15 Score=32.82 Aligned_cols=75 Identities=12% Similarity=0.119 Sum_probs=50.7
Q ss_pred ceEEEcCCeEEEEEECCCC--CCcceeEEecccccccCcceEEEEeeecceEEEEEECCCCCccCCceEEEe--CCEEEE
Q 041378 49 ADIYEDPSHYSFILDMPGL--EASNIKKKKGQSAENEGAVKAIRIERRRARNMRKFTLPQDSNLEEVKAIYK--DGVLTV 124 (145)
Q Consensus 49 ~~v~e~~~~~~i~~~lpG~--~~e~i~V~~~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~vd~~~i~A~~~--~GvL~I 124 (145)
+|+|+++++++|.+...+. ...++.+...+. .-..+.-.....|...+.|-..|+.+. +.++. -|-+.|
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~------~l~v~~~~~~~~~~~~~~L~~~I~~~~-~~~~~~~~~KVEI 73 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQR------ELRVEIILGDKSYLLHLDLSNEVQWPC-EVRISTETGKIEL 73 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCCC------EEEEEEECCCceEEEeeeccccCCCCc-EEEEcccCceEEE
Confidence 4899999999999998864 444544543332 111111111344888889999998775 66665 889999
Q ss_pred EEeCcC
Q 041378 125 TVAKKV 130 (145)
Q Consensus 125 ~~pK~~ 130 (145)
.|.|..
T Consensus 74 ~L~K~e 79 (87)
T cd06490 74 VLKKKE 79 (87)
T ss_pred EEEcCC
Confidence 999954
No 38
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.09 E-value=0.05 Score=43.82 Aligned_cols=80 Identities=13% Similarity=0.103 Sum_probs=60.9
Q ss_pred CCcceEEEcCCeEEEEEECCCCCCcceeEEecccccccCcceEEEEeeecceEEEEEECCCCCccCCceEEEeCCEEEEE
Q 041378 46 RTPADIYEDPSHYSFILDMPGLEASNIKKKKGQSAENEGAVKAIRIERRRARNMRKFTLPQDSNLEEVKAIYKDGVLTVT 125 (145)
Q Consensus 46 ~p~~~v~e~~~~~~i~~~lpG~~~e~i~V~~~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~vd~~~i~A~~~~GvL~I~ 125 (145)
.+.+++++++++++|.+.+.|+.++++.|...+.. -.....-.....|...+.|-..|+++..+.....--+.|+
T Consensus 156 ~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~~-----l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~Kiei~ 230 (356)
T PLN03088 156 KYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQI-----LSVVIEVPGEDAYHLQPRLFGKIIPDKCKYEVLSTKIEIR 230 (356)
T ss_pred ccccceeecCCEEEEEEEecCCChHHcEEEeecCE-----EEEEEecCCCcceeecccccccccccccEEEEecceEEEE
Confidence 46789999999999999999999999999665431 1111011112357777899999999998888877799999
Q ss_pred EeCcC
Q 041378 126 VAKKV 130 (145)
Q Consensus 126 ~pK~~ 130 (145)
|.|..
T Consensus 231 l~K~~ 235 (356)
T PLN03088 231 LAKAE 235 (356)
T ss_pred EecCC
Confidence 98864
No 39
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=95.16 E-value=0.086 Score=38.63 Aligned_cols=79 Identities=9% Similarity=0.073 Sum_probs=58.0
Q ss_pred CCcceEEEcCCeEEEEEECCCCCCcceeEEecccccccCcceEEEEeeecceEEEEEECCCCCccCCceEEEeCCEEEEE
Q 041378 46 RTPADIYEDPSHYSFILDMPGLEASNIKKKKGQSAENEGAVKAIRIERRRARNMRKFTLPQDSNLEEVKAIYKDGVLTVT 125 (145)
Q Consensus 46 ~p~~~v~e~~~~~~i~~~lpG~~~e~i~V~~~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~vd~~~i~A~~~~GvL~I~ 125 (145)
.+.+|+|++....+|++-.+++.++|+.|...+. . -....+-.....|.....|-..|.++..+-..----+.|+
T Consensus 3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~--~---l~~~~~~~~g~~~~l~~~L~~~I~pe~~s~k~~stKVEI~ 77 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEISEN--T---LSIVIQLPSGSEYNLQLKLYHEIIPEKSSFKVFSTKVEIT 77 (196)
T ss_pred cccceeecCCceEEEEEEecCCCccceeEEeecc--e---EEEEEecCCchhhhhhHHhcccccccceeeEeeeeeEEEE
Confidence 4588999999999999999999999999966543 1 1111122223356666668889999986666667788999
Q ss_pred EeCc
Q 041378 126 VAKK 129 (145)
Q Consensus 126 ~pK~ 129 (145)
|+|.
T Consensus 78 L~K~ 81 (196)
T KOG1309|consen 78 LAKA 81 (196)
T ss_pred eccc
Confidence 9883
No 40
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=94.31 E-value=0.88 Score=30.26 Aligned_cols=78 Identities=10% Similarity=0.092 Sum_probs=52.6
Q ss_pred CCcceEEEcCCeEEEEEECC-CC-CCcceeEEecccccccCcceEEEEee-ecceEEEEEECCCCCccCCceEEEeCC-E
Q 041378 46 RTPADIYEDPSHYSFILDMP-GL-EASNIKKKKGQSAENEGAVKAIRIER-RRARNMRKFTLPQDSNLEEVKAIYKDG-V 121 (145)
Q Consensus 46 ~p~~~v~e~~~~~~i~~~lp-G~-~~e~i~V~~~~~~~~~~~~~~~~~e~-~~~~f~r~i~LP~~vd~~~i~A~~~~G-v 121 (145)
...|.+.++-+.+.|.+.|| |. +..+|.|...... -....+.. ....+ -.=.|+..|+++.-..++++| .
T Consensus 4 ~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~-----l~v~~~~~~~~~~~-i~G~L~~~V~~des~Wtled~~~ 77 (102)
T cd06495 4 RENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSS-----IRVSVRDGGGEKVL-MEGEFTHKINTENSLWSLEPGKC 77 (102)
T ss_pred CCceEEEeECCeEEEEEECCCCCccceEEEEEEEcCE-----EEEEEecCCCCceE-EeCcccCcccCccceEEEeCCCE
Confidence 45789999999999999999 54 6789999544330 01110000 00011 111689999999988999886 5
Q ss_pred EEEEEeCc
Q 041378 122 LTVTVAKK 129 (145)
Q Consensus 122 L~I~~pK~ 129 (145)
|.|+|-|.
T Consensus 78 l~I~L~K~ 85 (102)
T cd06495 78 VLLSLSKC 85 (102)
T ss_pred EEEEEEEC
Confidence 89999995
No 41
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=93.94 E-value=1 Score=28.90 Aligned_cols=73 Identities=16% Similarity=0.175 Sum_probs=50.3
Q ss_pred eEEEcCCeEEEEEECC-C--CCCcceeEEecccccccCcceEEEEeeecceEEEEEECCCCCccCCceEEEeCC-EEEEE
Q 041378 50 DIYEDPSHYSFILDMP-G--LEASNIKKKKGQSAENEGAVKAIRIERRRARNMRKFTLPQDSNLEEVKAIYKDG-VLTVT 125 (145)
Q Consensus 50 ~v~e~~~~~~i~~~lp-G--~~~e~i~V~~~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~vd~~~i~A~~~~G-vL~I~ 125 (145)
.+.++.++..|.+.|| + .++.+|+|...... -.. .......--.-.|...|+++.-..++++| .|.|.
T Consensus 2 ~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~-----l~v---~~~g~~~~i~G~L~~~V~~des~Wtled~~~l~i~ 73 (87)
T cd06492 2 RWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKH-----LKV---GLKGQPPIIDGELYNEVKVEESSWLIEDGKVVTVN 73 (87)
T ss_pred ccEeecCEEEEEEECCCCCCccceEEEEEEecCE-----EEE---EECCCceEEeCcccCcccccccEEEEeCCCEEEEE
Confidence 4568888999999996 3 78999999544330 011 00111122333789999999988889886 89999
Q ss_pred EeCcC
Q 041378 126 VAKKV 130 (145)
Q Consensus 126 ~pK~~ 130 (145)
|-|..
T Consensus 74 L~K~~ 78 (87)
T cd06492 74 LEKIN 78 (87)
T ss_pred EEECC
Confidence 99853
No 42
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=85.21 E-value=2.3 Score=27.42 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=31.1
Q ss_pred cceEEEEEECCCCCccCCceEEEeCCEEEEEEeCcC
Q 041378 95 RARNMRKFTLPQDSNLEEVKAIYKDGVLTVTVAKKV 130 (145)
Q Consensus 95 ~~~f~r~i~LP~~vd~~~i~A~~~~GvL~I~~pK~~ 130 (145)
...|.-...|| +++++.|+.++.+|.|+|..-+..
T Consensus 7 ~~~~~v~adlP-G~~kedI~V~v~~~~L~I~ger~~ 41 (87)
T cd06482 7 SSNVLASVDVC-GFEPDQVKVKVKDGKVQVSAEREN 41 (87)
T ss_pred CCEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEec
Confidence 45688899999 899999999999999999998754
No 43
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=84.70 E-value=2.5 Score=26.85 Aligned_cols=35 Identities=11% Similarity=0.098 Sum_probs=30.4
Q ss_pred ecceEEEEEECCCCCccCCceEEEeCCEEEEEEeCc
Q 041378 94 RRARNMRKFTLPQDSNLEEVKAIYKDGVLTVTVAKK 129 (145)
Q Consensus 94 ~~~~f~r~i~LP~~vd~~~i~A~~~~GvL~I~~pK~ 129 (145)
...+|.-.+.|| ++.++.|+.++.||.|+|..-+.
T Consensus 5 ~~d~y~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 39 (83)
T cd06476 5 EDDKYQVFLDVC-HFTPDEITVRTVDNLLEVSARHP 39 (83)
T ss_pred cCCeEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 345788899999 88999999999999999998763
No 44
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=84.46 E-value=4.5 Score=25.84 Aligned_cols=34 Identities=15% Similarity=0.094 Sum_probs=30.7
Q ss_pred ceEEEEEECCCCCccCCceEEEeCCEEEEEEeCcC
Q 041378 96 ARNMRKFTLPQDSNLEEVKAIYKDGVLTVTVAKKV 130 (145)
Q Consensus 96 ~~f~r~i~LP~~vd~~~i~A~~~~GvL~I~~pK~~ 130 (145)
..|.-.+.|| +++.+.|+..+.++.|+|...+..
T Consensus 11 ~~~~v~~~lP-G~~kedi~v~~~~~~L~I~g~~~~ 44 (90)
T cd06470 11 NNYRITLAVA-GFSEDDLEIEVENNQLTVTGKKAD 44 (90)
T ss_pred CeEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 5789999999 799999999999999999988755
No 45
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=83.35 E-value=2.8 Score=26.76 Aligned_cols=35 Identities=29% Similarity=0.442 Sum_probs=30.7
Q ss_pred cceEEEEEECCCCCccCCceEEEeCCEEEEEEeCcC
Q 041378 95 RARNMRKFTLPQDSNLEEVKAIYKDGVLTVTVAKKV 130 (145)
Q Consensus 95 ~~~f~r~i~LP~~vd~~~i~A~~~~GvL~I~~pK~~ 130 (145)
...|.-.+.|| +++.+.|+..+.++.|.|..-+..
T Consensus 9 ~~~~~i~~~lP-Gv~~edi~v~~~~~~L~I~g~~~~ 43 (93)
T cd06471 9 DDEYIVEADLP-GFKKEDIKLDYKDGYLTISAKRDE 43 (93)
T ss_pred CCEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 45788999999 799999999999999999987753
No 46
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=82.82 E-value=3.4 Score=26.10 Aligned_cols=33 Identities=9% Similarity=0.067 Sum_probs=29.6
Q ss_pred cceEEEEEECCCCCccCCceEEEeCCEEEEEEeC
Q 041378 95 RARNMRKFTLPQDSNLEEVKAIYKDGVLTVTVAK 128 (145)
Q Consensus 95 ~~~f~r~i~LP~~vd~~~i~A~~~~GvL~I~~pK 128 (145)
...|.-.+.|| +++++.|+.++.+|.|+|..-+
T Consensus 6 ~~~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~ 38 (83)
T cd06478 6 KDRFSVNLDVK-HFSPEELSVKVLGDFVEIHGKH 38 (83)
T ss_pred CceEEEEEECC-CCCHHHeEEEEECCEEEEEEEE
Confidence 35688999999 9999999999999999999865
No 47
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=82.58 E-value=2.7 Score=26.78 Aligned_cols=34 Identities=12% Similarity=0.005 Sum_probs=29.9
Q ss_pred ceEEEEEECCCCCccCCceEEEeCCEEEEEEeCcC
Q 041378 96 ARNMRKFTLPQDSNLEEVKAIYKDGVLTVTVAKKV 130 (145)
Q Consensus 96 ~~f~r~i~LP~~vd~~~i~A~~~~GvL~I~~pK~~ 130 (145)
..|.-.+.|| +++++.|+.++.+|.|+|..-+..
T Consensus 7 ~~~~v~~dlp-G~~~edI~V~v~~~~L~I~ge~~~ 40 (83)
T cd06477 7 PMFQILLDVV-QFRPEDIIIQVFEGWLLIKGQHGV 40 (83)
T ss_pred ceEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 4588889999 899999999999999999997643
No 48
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=80.77 E-value=3.6 Score=26.26 Aligned_cols=33 Identities=9% Similarity=0.067 Sum_probs=29.6
Q ss_pred cceEEEEEECCCCCccCCceEEEeCCEEEEEEeC
Q 041378 95 RARNMRKFTLPQDSNLEEVKAIYKDGVLTVTVAK 128 (145)
Q Consensus 95 ~~~f~r~i~LP~~vd~~~i~A~~~~GvL~I~~pK 128 (145)
...|.-.+.|| +++++.|+.+..+|.|+|..-+
T Consensus 9 ~~~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~ 41 (86)
T cd06497 9 RDKFTIYLDVK-HFSPEDLTVKVLDDYVEIHGKH 41 (86)
T ss_pred CCEEEEEEECC-CCCHHHeEEEEECCEEEEEEEE
Confidence 45788999999 8999999999999999999865
No 49
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=79.81 E-value=4.6 Score=25.29 Aligned_cols=34 Identities=18% Similarity=0.118 Sum_probs=30.3
Q ss_pred ceEEEEEECCCCCccCCceEEEeCCEEEEEEeCcC
Q 041378 96 ARNMRKFTLPQDSNLEEVKAIYKDGVLTVTVAKKV 130 (145)
Q Consensus 96 ~~f~r~i~LP~~vd~~~i~A~~~~GvL~I~~pK~~ 130 (145)
..|.-.+.|| ++.++.|+.+++++.|.|..-+..
T Consensus 7 ~~~~v~~dlp-G~~~edI~v~v~~~~L~I~g~~~~ 40 (83)
T cd06526 7 EKFQVTLDVK-GFKPEELKVKVSDNKLVVEGKHEE 40 (83)
T ss_pred eeEEEEEECC-CCCHHHcEEEEECCEEEEEEEEee
Confidence 3689999999 699999999999999999998754
No 50
>PRK10743 heat shock protein IbpA; Provisional
Probab=79.65 E-value=8 Score=27.01 Aligned_cols=34 Identities=15% Similarity=0.079 Sum_probs=29.6
Q ss_pred ceEEEEEECCCCCccCCceEEEeCCEEEEEEeCcC
Q 041378 96 ARNMRKFTLPQDSNLEEVKAIYKDGVLTVTVAKKV 130 (145)
Q Consensus 96 ~~f~r~i~LP~~vd~~~i~A~~~~GvL~I~~pK~~ 130 (145)
..|.-...|| +++.+.|..++++|.|+|..-+..
T Consensus 45 ~~~~v~aelP-Gv~kedi~V~v~~~~LtI~ge~~~ 78 (137)
T PRK10743 45 NHYRIAIAVA-GFAESELEITAQDNLLVVKGAHAD 78 (137)
T ss_pred CEEEEEEECC-CCCHHHeEEEEECCEEEEEEEECc
Confidence 3588889999 999999999999999999997643
No 51
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=78.70 E-value=12 Score=23.80 Aligned_cols=35 Identities=29% Similarity=0.388 Sum_probs=29.0
Q ss_pred cceEEEEEECCCCCccCCceEEEeCC-EEEEEEeCcC
Q 041378 95 RARNMRKFTLPQDSNLEEVKAIYKDG-VLTVTVAKKV 130 (145)
Q Consensus 95 ~~~f~r~i~LP~~vd~~~i~A~~~~G-vL~I~~pK~~ 130 (145)
...|.-.+.|| ++..+.|+.++.+| +|+|..-+..
T Consensus 8 ~~~~~i~~~lP-Gv~~edi~i~v~~~~~L~I~g~~~~ 43 (92)
T cd06472 8 PEAHVFKADVP-GVKKEDVKVEVEDGRVLRISGERKK 43 (92)
T ss_pred CCeEEEEEECC-CCChHhEEEEEeCCCEEEEEEEecc
Confidence 35688899999 68999999999865 9999997643
No 52
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=77.96 E-value=5.6 Score=25.17 Aligned_cols=33 Identities=12% Similarity=0.097 Sum_probs=29.6
Q ss_pred ceEEEEEECCCCCccCCceEEEeCCEEEEEEeCc
Q 041378 96 ARNMRKFTLPQDSNLEEVKAIYKDGVLTVTVAKK 129 (145)
Q Consensus 96 ~~f~r~i~LP~~vd~~~i~A~~~~GvL~I~~pK~ 129 (145)
..|.-.+.|| +++++.|+.+..+|.|+|..-+.
T Consensus 8 ~~~~v~~dlp-G~~pedi~V~v~~~~L~I~ger~ 40 (81)
T cd06479 8 DTYQFAVDVS-DFSPEDIIVTTSNNQIEVHAEKL 40 (81)
T ss_pred CeEEEEEECC-CCCHHHeEEEEECCEEEEEEEEe
Confidence 4688889999 89999999999999999998764
No 53
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=76.57 E-value=8.4 Score=24.76 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=28.6
Q ss_pred cceEEEEEECCCCCccCCceEEEeCCEEEEEEeCc
Q 041378 95 RARNMRKFTLPQDSNLEEVKAIYKDGVLTVTVAKK 129 (145)
Q Consensus 95 ~~~f~r~i~LP~~vd~~~i~A~~~~GvL~I~~pK~ 129 (145)
...|.-.+.|| +++.+.++.++.++.|.|+.-+.
T Consensus 6 ~~~~~i~~~lp-G~~~edi~I~~~~~~L~I~g~~~ 39 (102)
T PF00011_consen 6 EDEYIIKVDLP-GFDKEDIKIKVDDNKLVISGKRK 39 (102)
T ss_dssp SSEEEEEEE-T-TS-GGGEEEEEETTEEEEEEEEE
T ss_pred CCEEEEEEECC-CCChHHEEEEEecCccceeceee
Confidence 45788999999 88999999999999999999875
No 54
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=75.80 E-value=6.2 Score=25.05 Aligned_cols=33 Identities=9% Similarity=0.088 Sum_probs=29.2
Q ss_pred cceEEEEEECCCCCccCCceEEEeCCEEEEEEeC
Q 041378 95 RARNMRKFTLPQDSNLEEVKAIYKDGVLTVTVAK 128 (145)
Q Consensus 95 ~~~f~r~i~LP~~vd~~~i~A~~~~GvL~I~~pK 128 (145)
...|.-.+.|| +++++.|+.+..+|.|+|..-+
T Consensus 6 ~~~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~ 38 (84)
T cd06498 6 KDKFSVNLDVK-HFSPEELKVKVLGDFIEIHGKH 38 (84)
T ss_pred CceEEEEEECC-CCCHHHeEEEEECCEEEEEEEE
Confidence 35688899998 8999999999999999999955
No 55
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=75.15 E-value=12 Score=23.86 Aligned_cols=34 Identities=15% Similarity=0.055 Sum_probs=29.4
Q ss_pred ceEEEEEECCCCCccCCceEEEeCCEEEEEEeCcC
Q 041378 96 ARNMRKFTLPQDSNLEEVKAIYKDGVLTVTVAKKV 130 (145)
Q Consensus 96 ~~f~r~i~LP~~vd~~~i~A~~~~GvL~I~~pK~~ 130 (145)
..|.-.+.|| ++.++.|+.++.++.|.|..-+..
T Consensus 7 d~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~~ 40 (87)
T cd06481 7 EGFSLKLDVR-GFSPEDLSVRVDGRKLVVTGKREK 40 (87)
T ss_pred ceEEEEEECC-CCChHHeEEEEECCEEEEEEEEee
Confidence 3588889999 889999999999999999997643
No 56
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=74.21 E-value=7.5 Score=24.75 Aligned_cols=34 Identities=24% Similarity=0.213 Sum_probs=30.3
Q ss_pred cceEEEEEECCCCCccCCceEEEeCCEEEEEEeCc
Q 041378 95 RARNMRKFTLPQDSNLEEVKAIYKDGVLTVTVAKK 129 (145)
Q Consensus 95 ~~~f~r~i~LP~~vd~~~i~A~~~~GvL~I~~pK~ 129 (145)
...|.-.+.|| +++++.|+..+.++.|+|+.-+.
T Consensus 9 ~~~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~ 42 (86)
T cd06475 9 ADRWKVSLDVN-HFAPEELVVKTKDGVVEITGKHE 42 (86)
T ss_pred CCeEEEEEECC-CCCHHHEEEEEECCEEEEEEEEC
Confidence 35688999999 99999999999999999999764
No 57
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=73.18 E-value=14 Score=26.04 Aligned_cols=33 Identities=15% Similarity=0.089 Sum_probs=29.1
Q ss_pred eEEEEEECCCCCccCCceEEEeCCEEEEEEeCcC
Q 041378 97 RNMRKFTLPQDSNLEEVKAIYKDGVLTVTVAKKV 130 (145)
Q Consensus 97 ~f~r~i~LP~~vd~~~i~A~~~~GvL~I~~pK~~ 130 (145)
.|.-...|| +++.+.|..++++|.|+|..-+..
T Consensus 44 ~y~v~adlP-Gv~kedi~V~v~~~~LtI~ge~~~ 76 (142)
T PRK11597 44 HYRITLALA-GFRQEDLDIQLEGTRLTVKGTPEQ 76 (142)
T ss_pred EEEEEEEeC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 478889999 999999999999999999997643
No 58
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=72.70 E-value=13 Score=28.94 Aligned_cols=83 Identities=12% Similarity=0.087 Sum_probs=61.5
Q ss_pred cCCcceEEEcCCeEEEEEECCCCCCcceeEEecccccccCcceEEEEeeecceEEEEEECCCCCccCCceEEEeCCEEEE
Q 041378 45 LRTPADIYEDPSHYSFILDMPGLEASNIKKKKGQSAENEGAVKAIRIERRRARNMRKFTLPQDSNLEEVKAIYKDGVLTV 124 (145)
Q Consensus 45 ~~p~~~v~e~~~~~~i~~~lpG~~~e~i~V~~~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~vd~~~i~A~~~~GvL~I 124 (145)
..-+.|++++++.++|.+..-|.-++.--|..... .. ...+.. .....+|...+.|=.-|++++.++.+-.--..|
T Consensus 213 ~~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~--~l-~V~ivf-~~gna~fd~d~kLwgvvnve~s~v~m~~tkVEI 288 (320)
T KOG1667|consen 213 VKCRHDWHQTNGFVTINVYAKGALPETSNIEANGT--TL-HVSIVF-GFGNASFDLDYKLWGVVNVEESSVVMGETKVEI 288 (320)
T ss_pred ccchhhhhhcCCeEEEEEEeccCCcccceeeeCCe--EE-EEEEEe-cCCCceeeccceeeeeechhhceEEeecceEEE
Confidence 45588999999999999999888777655533322 00 011111 123467999999999999999999999999999
Q ss_pred EEeCcCC
Q 041378 125 TVAKKVP 131 (145)
Q Consensus 125 ~~pK~~~ 131 (145)
.|+|.+|
T Consensus 289 sl~k~ep 295 (320)
T KOG1667|consen 289 SLKKAEP 295 (320)
T ss_pred EEeccCC
Confidence 9999764
No 59
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=70.74 E-value=5.4 Score=23.90 Aligned_cols=30 Identities=27% Similarity=0.412 Sum_probs=16.3
Q ss_pred CCceEEEeCCEEEEEEeCcCCCCCCCCeeEEecc
Q 041378 111 EEVKAIYKDGVLTVTVAKKVPEVSRRPKTVTIPV 144 (145)
Q Consensus 111 ~~i~A~~~~GvL~I~~pK~~~~~~~~~~~I~I~v 144 (145)
..|.|.|+||+|+--=|-. -..+.++.|.+
T Consensus 3 ~~I~aiYe~GvlkPl~~~~----L~Eg~~V~i~I 32 (60)
T PF01954_consen 3 KVIEAIYENGVLKPLEPVD----LPEGEEVKITI 32 (60)
T ss_dssp --EEEEEETTEEEECS---------TTEEEEEEE
T ss_pred ceEEEEEECCEEEECCCCC----CCCCCEEEEEE
Confidence 3589999999998653332 22345555543
No 60
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=67.31 E-value=14 Score=22.52 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=30.2
Q ss_pred ceEEEEEECCCCCccCCceEEEeCCEEEEEEeCcC
Q 041378 96 ARNMRKFTLPQDSNLEEVKAIYKDGVLTVTVAKKV 130 (145)
Q Consensus 96 ~~f~r~i~LP~~vd~~~i~A~~~~GvL~I~~pK~~ 130 (145)
..|.-.+.||. ++.+.++.++.++.|.|..-+..
T Consensus 7 ~~~~i~~~lpg-~~~~~i~V~v~~~~l~I~g~~~~ 40 (88)
T cd06464 7 DAYVVEADLPG-FKKEDIKVEVEDGVLTISGEREE 40 (88)
T ss_pred CEEEEEEECCC-CCHHHeEEEEECCEEEEEEEEec
Confidence 46889999995 99999999999999999988754
No 61
>PF14651 Lipocalin_7: Lipocalin / cytosolic fatty-acid binding protein family; PDB: 2F73_A 3B2L_A 3B2J_A 3STN_A 3STK_A 3STM_X 3VG6_A 3VG4_A 3VG5_A 3B2K_A ....
Probab=67.24 E-value=32 Score=23.82 Aligned_cols=44 Identities=16% Similarity=0.262 Sum_probs=28.1
Q ss_pred HHHHHHhhcCCccccccccccccCCcceEEEcCCeEEEEEECCCCC
Q 041378 23 PEEMEKMLQQPGRRYVKNARAILRTPADIYEDPSHYSFILDMPGLE 68 (145)
Q Consensus 23 ~~e~~~~~~~~~~~~~~~~~~~~~p~~~v~e~~~~~~i~~~lpG~~ 68 (145)
+++|.+.++-|..... ......|..+|.++||.|.++..-||-+
T Consensus 15 ~e~fmkaiGvp~d~i~--k~k~~k~v~Ei~q~Gd~ft~t~~~~ggk 58 (128)
T PF14651_consen 15 FEEFMKAIGVPEDKIQ--KGKDAKPVTEISQNGDDFTWTTTTPGGK 58 (128)
T ss_dssp HHHHHHHCT--HHHHH--HHTTS-EEEEEEEETTEEEEEEEETTTE
T ss_pred HHHHHHHhCCCHHHHH--hhhCCCceEEEEEeCCeEEEEEEecCCC
Confidence 5666666665553221 1234567889999999999998888643
No 62
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=66.58 E-value=24 Score=24.57 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=29.7
Q ss_pred eEEEEEECCCCCccCCceEEEeCCEEEEEEeCcC
Q 041378 97 RNMRKFTLPQDSNLEEVKAIYKDGVLTVTVAKKV 130 (145)
Q Consensus 97 ~f~r~i~LP~~vd~~~i~A~~~~GvL~I~~pK~~ 130 (145)
.|.-.+.|| +++.+.|+-++.++.|+|+.-+..
T Consensus 51 ~~~I~~elP-G~~kedI~I~~~~~~l~I~g~~~~ 83 (146)
T COG0071 51 EYRITAELP-GVDKEDIEITVEGNTLTIRGEREE 83 (146)
T ss_pred EEEEEEEcC-CCChHHeEEEEECCEEEEEEEecc
Confidence 588889999 899999999999999999998753
No 63
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=59.50 E-value=68 Score=23.55 Aligned_cols=77 Identities=12% Similarity=0.106 Sum_probs=52.5
Q ss_pred cccCCcceEEEcCCeEEEEEECC-CC-CCcceeEEecccc--cccCcceEEEEeeecceEEEEEECCCCCccCCceEEEe
Q 041378 43 AILRTPADIYEDPSHYSFILDMP-GL-EASNIKKKKGQSA--ENEGAVKAIRIERRRARNMRKFTLPQDSNLEEVKAIYK 118 (145)
Q Consensus 43 ~~~~p~~~v~e~~~~~~i~~~lp-G~-~~e~i~V~~~~~~--~~~~~~~~~~~e~~~~~f~r~i~LP~~vd~~~i~A~~~ 118 (145)
+...+.+.+.++=..+.|.+.+| |+ +..+|.+...... -...+.. ---.=.|...|+++....+++
T Consensus 15 g~~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~kg~~----------~ildG~L~~~vk~des~WtiE 84 (179)
T KOG2265|consen 15 GADEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLKGQP----------PILDGELSHSVKVDESTWTIE 84 (179)
T ss_pred CccccceeeeeehhheEEEeecCCCCcccceEEEEeeeeEEEEecCCCC----------ceecCccccccccccceEEec
Confidence 45566888999999999999887 77 8888888443320 0111111 122235788999999999999
Q ss_pred CCEEEEEEeCc
Q 041378 119 DGVLTVTVAKK 129 (145)
Q Consensus 119 ~GvL~I~~pK~ 129 (145)
+|.+.|.+=++
T Consensus 85 d~k~i~i~l~K 95 (179)
T KOG2265|consen 85 DGKMIVILLKK 95 (179)
T ss_pred CCEEEEEEeec
Confidence 99877776554
No 64
>cd01759 PLAT_PL PLAT/LH2 domain of pancreatic triglyceride lipase. Lipases hydrolyze phospholipids and triglycerides to generate fatty acids for energy production or for storage and to release inositol phosphates that act as second messengers. The central role of triglyceride lipases is in energy production. The proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=59.09 E-value=53 Score=22.17 Aligned_cols=81 Identities=16% Similarity=0.189 Sum_probs=46.1
Q ss_pred eEEEEEECCCC--CCcceeEEecccccccCcceEEEEee-ecceEEEEEECCCCC-ccCCceEEEeCCEEEEEEeCcCCC
Q 041378 57 HYSFILDMPGL--EASNIKKKKGQSAENEGAVKAIRIER-RRARNMRKFTLPQDS-NLEEVKAIYKDGVLTVTVAKKVPE 132 (145)
Q Consensus 57 ~~~i~~~lpG~--~~e~i~V~~~~~~~~~~~~~~~~~e~-~~~~f~r~i~LP~~v-d~~~i~A~~~~GvL~I~~pK~~~~ 132 (145)
+|.|++.+.|= -.-.+.|.....+...+...+..... ....|..-|....++ +...++-.+++.+|....|+..
T Consensus 2 ~Yqv~V~~s~~~~~~g~~~vsL~G~~g~s~~~~i~~g~l~pg~tys~li~~d~dvG~l~~Vkf~W~~~~~n~~~p~~~-- 79 (113)
T cd01759 2 RYKVSVTLSGKKKVTGTILVSLYGNKGNTRQYEIFKGTLKPGNTYSAFIDVDVDVGPLTKVKFIWNNNVINITLPKVG-- 79 (113)
T ss_pred eEEEEEEEecccccCceEEEEEEcCCCCccceEEEeeeecCCCEEEEEEEccCCCCCEEEEEEEEeCCccCCCCCeEE--
Confidence 57777777773 22344443222211222222221111 235788888888887 7777888888887766566532
Q ss_pred CCCCCeeEEec
Q 041378 133 VSRRPKTVTIP 143 (145)
Q Consensus 133 ~~~~~~~I~I~ 143 (145)
.++|.|+
T Consensus 80 ----~~~I~Vq 86 (113)
T cd01759 80 ----AEKITVQ 86 (113)
T ss_pred ----EEEEEEE
Confidence 3666665
No 65
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=58.64 E-value=52 Score=24.12 Aligned_cols=80 Identities=4% Similarity=-0.031 Sum_probs=54.4
Q ss_pred cccCCcceEEEcCCeEEEEEECCCCCCcceeEEecccccccCcceEEEEe-eecceEEEEEECCCCCccCCceEEEeCCE
Q 041378 43 AILRTPADIYEDPSHYSFILDMPGLEASNIKKKKGQSAENEGAVKAIRIE-RRRARNMRKFTLPQDSNLEEVKAIYKDGV 121 (145)
Q Consensus 43 ~~~~p~~~v~e~~~~~~i~~~lpG~~~e~i~V~~~~~~~~~~~~~~~~~e-~~~~~f~r~i~LP~~vd~~~i~A~~~~Gv 121 (145)
....|.+.++++.+.+.+++.++.-+-.+|.+...-- .+.... .....|...|.|-..||++..+.+-. +-
T Consensus 4 ~~~~p~v~Waqr~~~vyltv~Ved~~d~~v~~e~~~l-------~fs~k~~~d~~~~~~~ief~~eIdpe~sk~k~~-~r 75 (180)
T KOG3158|consen 4 GMQPPEVKWAQRRDLVYLTVCVEDAKDVHVNLEPSKL-------TFSCKSGADNHKYENEIEFFDEIDPEKSKHKRT-SR 75 (180)
T ss_pred cccCCcchhhhhcCeEEEEEEeccCccceeeccccEE-------EEEeccCCCceeeEEeeehhhhcCHhhcccccc-ce
Confidence 4556788999999999999999988887777743211 111111 12234677799999999998776665 66
Q ss_pred EEEEEeCcC
Q 041378 122 LTVTVAKKV 130 (145)
Q Consensus 122 L~I~~pK~~ 130 (145)
+.+.++++.
T Consensus 76 ~if~i~~K~ 84 (180)
T KOG3158|consen 76 SIFCILRKK 84 (180)
T ss_pred EEEEEEEcc
Confidence 666665544
No 66
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=54.85 E-value=27 Score=22.65 Aligned_cols=33 Identities=12% Similarity=0.216 Sum_probs=28.7
Q ss_pred cceEEEEEECCCCCccCCceEEEeCCEEEEEEe
Q 041378 95 RARNMRKFTLPQDSNLEEVKAIYKDGVLTVTVA 127 (145)
Q Consensus 95 ~~~f~r~i~LP~~vd~~~i~A~~~~GvL~I~~p 127 (145)
.....-+|+||.++..+.++..+...-|+|.+.
T Consensus 14 ~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~ 46 (93)
T cd06494 14 MDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVK 46 (93)
T ss_pred cCEEEEEEECCCCCceeeEEEEEEcCEEEEEEC
Confidence 455677889999999999999999999999983
No 67
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=50.96 E-value=56 Score=19.98 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=27.9
Q ss_pred ceEEEEEECCCCCccCCceEEEeCCEEEEEEe
Q 041378 96 ARNMRKFTLPQDSNLEEVKAIYKDGVLTVTVA 127 (145)
Q Consensus 96 ~~f~r~i~LP~~vd~~~i~A~~~~GvL~I~~p 127 (145)
....-.|.+|..++.+.+++.+.+.-|.|.++
T Consensus 8 ~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 8 DEVTVTIPLPEGTKSKDVKVEITPKHLKVGVK 39 (85)
T ss_pred CEEEEEEECCCCCcceeEEEEEEcCEEEEEEC
Confidence 45677889999999999999999999999986
No 68
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=48.76 E-value=8.9 Score=27.28 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=17.3
Q ss_pred CCCCccCCceEEEeCCEEEEEEe
Q 041378 105 PQDSNLEEVKAIYKDGVLTVTVA 127 (145)
Q Consensus 105 P~~vd~~~i~A~~~~GvL~I~~p 127 (145)
-+.+..+.--+.|.||||+|.++
T Consensus 66 ~e~~~~~~~Dv~y~~GVLTl~lg 88 (156)
T KOG3413|consen 66 AEEVPGEGFDVDYADGVLTLKLG 88 (156)
T ss_pred HhhcCccccccccccceEEEEec
Confidence 34444455668899999999987
No 69
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=44.49 E-value=52 Score=20.49 Aligned_cols=32 Identities=13% Similarity=0.332 Sum_probs=26.2
Q ss_pred ceEEEEEECCCCCccCCceEEEeCCEEEEEEe
Q 041378 96 ARNMRKFTLPQDSNLEEVKAIYKDGVLTVTVA 127 (145)
Q Consensus 96 ~~f~r~i~LP~~vd~~~i~A~~~~GvL~I~~p 127 (145)
....-.|.+|.++..+.++..+...-|.|.+.
T Consensus 8 ~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06493 8 EDLTLTIRLPEDTTKEDIRIKFLPDHISIALK 39 (85)
T ss_pred CEEEEEEECCCCCChhhEEEEEecCEEEEEeC
Confidence 34566789999999999999998888888773
No 70
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=43.50 E-value=24 Score=23.43 Aligned_cols=18 Identities=28% Similarity=0.475 Sum_probs=14.7
Q ss_pred CCceEEEeCCEEEEEEeC
Q 041378 111 EEVKAIYKDGVLTVTVAK 128 (145)
Q Consensus 111 ~~i~A~~~~GvL~I~~pK 128 (145)
..+-+.+.+|||+|+++.
T Consensus 28 ~d~D~e~~~gVLti~f~~ 45 (105)
T cd00503 28 ADIDVETQGGVLTLTFGN 45 (105)
T ss_pred cCEeeeccCCEEEEEECC
Confidence 456788899999999973
No 71
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=42.42 E-value=32 Score=22.97 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=14.7
Q ss_pred CceEEEeCCEEEEEEeC
Q 041378 112 EVKAIYKDGVLTVTVAK 128 (145)
Q Consensus 112 ~i~A~~~~GvL~I~~pK 128 (145)
.+.+.+.+|||+|+++.
T Consensus 31 d~d~e~~~gVLti~~~~ 47 (109)
T PF01491_consen 31 DIDVERSGGVLTIEFPD 47 (109)
T ss_dssp TEEEEEETTEEEEEETT
T ss_pred ceEEEccCCEEEEEECC
Confidence 47799999999999964
No 72
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=39.82 E-value=26 Score=23.33 Aligned_cols=16 Identities=31% Similarity=0.463 Sum_probs=13.8
Q ss_pred ceEEEeCCEEEEEEeC
Q 041378 113 VKAIYKDGVLTVTVAK 128 (145)
Q Consensus 113 i~A~~~~GvL~I~~pK 128 (145)
+-+.+.+|||+|+++.
T Consensus 29 ~D~e~~~gVLti~f~~ 44 (105)
T PRK00446 29 IDCERNGGVLTLTFEN 44 (105)
T ss_pred eeeeccCCEEEEEECC
Confidence 6688899999999975
No 73
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=39.81 E-value=25 Score=23.28 Aligned_cols=16 Identities=31% Similarity=0.439 Sum_probs=13.7
Q ss_pred ceEEEeCCEEEEEEeC
Q 041378 113 VKAIYKDGVLTVTVAK 128 (145)
Q Consensus 113 i~A~~~~GvL~I~~pK 128 (145)
+-+.+.+|||+|+++.
T Consensus 27 ~D~e~~~gVLti~f~~ 42 (102)
T TIGR03421 27 IDCERAGGVLTLTFEN 42 (102)
T ss_pred eeeecCCCEEEEEECC
Confidence 6678899999999974
No 74
>PF14814 UB2H: Bifunctional transglycosylase second domain; PDB: 3FWL_A 3VMA_A.
Probab=38.77 E-value=65 Score=20.29 Aligned_cols=44 Identities=16% Similarity=0.262 Sum_probs=27.6
Q ss_pred cCcceEEEEeeecceEEEEEECCCCCccCC-ceEEEeCCEE-EEEE
Q 041378 83 EGAVKAIRIERRRARNMRKFTLPQDSNLEE-VKAIYKDGVL-TVTV 126 (145)
Q Consensus 83 ~~~~~~~~~e~~~~~f~r~i~LP~~vd~~~-i~A~~~~GvL-~I~~ 126 (145)
...+.|........=|.|.|.+|++..+.. +.-+|++|.+ .|.-
T Consensus 28 ~~pG~y~~~g~~i~i~~R~F~F~Dg~e~~~~~~l~f~~~~V~~i~~ 73 (85)
T PF14814_consen 28 DRPGEYSRSGNRIEIYTRGFDFPDGQEPARRVRLTFSGGRVSSIQD 73 (85)
T ss_dssp -STTEEEEETTEEEEEE--EEETTCEE--EEEEEEEETTEEEEEEE
T ss_pred CCCeEEEEECCEEEEEECCCCCCCCCccCEEEEEEECCCEEEEEEE
Confidence 334556555555667899999999987776 8888987744 4553
No 75
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=37.96 E-value=1.3e+02 Score=22.41 Aligned_cols=76 Identities=8% Similarity=0.060 Sum_probs=49.6
Q ss_pred cceEEEcCCeEEEEEECCCCCCcceeEEecccccccCcceEEEEeeecceEEEEE-ECCCCCccCCceEEEeCCEEEEEE
Q 041378 48 PADIYEDPSHYSFILDMPGLEASNIKKKKGQSAENEGAVKAIRIERRRARNMRKF-TLPQDSNLEEVKAIYKDGVLTVTV 126 (145)
Q Consensus 48 ~~~v~e~~~~~~i~~~lpG~~~e~i~V~~~~~~~~~~~~~~~~~e~~~~~f~r~i-~LP~~vd~~~i~A~~~~GvL~I~~ 126 (145)
.+.|-+.++.+.+-+.|-|++.++|+|.-.+.. -....+.-...+|+-.+ .|-..|+++.-+-..+-....|.+
T Consensus 76 ~ygWDQs~kfVK~yItL~GV~eenVqv~ftp~S-----ldl~v~dlqGK~y~~~vnnLlk~I~vEks~~kvKtd~v~I~~ 150 (224)
T KOG3260|consen 76 LYGWDQSNKFVKMYITLEGVDEENVQVEFTPMS-----LDLKVHDLQGKNYRMIVNNLLKPISVEKSSKKVKTDTVLILC 150 (224)
T ss_pred hcCccccCCeeEEEEEeecccccceeEEecccc-----eeeeeeecCCcceeeehhhhccccChhhcccccccceEEEee
Confidence 466778888999999999999999999544330 11121222234455544 255678888766666766666777
Q ss_pred eC
Q 041378 127 AK 128 (145)
Q Consensus 127 pK 128 (145)
.|
T Consensus 151 kk 152 (224)
T KOG3260|consen 151 KK 152 (224)
T ss_pred hh
Confidence 54
No 76
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=37.16 E-value=23 Score=23.26 Aligned_cols=15 Identities=33% Similarity=0.594 Sum_probs=12.7
Q ss_pred eEEEeCCEEEEEEeC
Q 041378 114 KAIYKDGVLTVTVAK 128 (145)
Q Consensus 114 ~A~~~~GvL~I~~pK 128 (145)
-+.+.+|||+|+++.
T Consensus 30 D~e~~~gVLti~~~~ 44 (97)
T TIGR03422 30 DVEYSSGVLTLELPS 44 (97)
T ss_pred ccccCCCEEEEEECC
Confidence 577899999999964
No 77
>PF14730 DUF4468: Domain of unknown function (DUF4468) with TBP-like fold
Probab=35.57 E-value=87 Score=19.88 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=13.6
Q ss_pred CceEEEeCCEEEEEEeC
Q 041378 112 EVKAIYKDGVLTVTVAK 128 (145)
Q Consensus 112 ~i~A~~~~GvL~I~~pK 128 (145)
.+++.++||-.++++-.
T Consensus 69 ~l~i~~kDgk~r~~~~~ 85 (91)
T PF14730_consen 69 TLIIDCKDGKYRLTITN 85 (91)
T ss_pred EEEEEEECCEEEEEEEE
Confidence 36788899999998854
No 78
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=30.07 E-value=81 Score=28.46 Aligned_cols=45 Identities=18% Similarity=0.015 Sum_probs=31.5
Q ss_pred ceEEEEEECCCCCccCCceEEEeCCEEEEEEeCcCCCCCCCCeeEEec
Q 041378 96 ARNMRKFTLPQDSNLEEVKAIYKDGVLTVTVAKKVPEVSRRPKTVTIP 143 (145)
Q Consensus 96 ~~f~r~i~LP~~vd~~~i~A~~~~GvL~I~~pK~~~~~~~~~~~I~I~ 143 (145)
+-|....+.-+.||-..+.-.|++|.|+|.+|-.+ ......|.|.
T Consensus 732 g~YsS~~P~~c~v~~~~~~f~y~~g~~~~~~~~~~---~~~~~~v~~~ 776 (777)
T PLN02711 732 RVFASEKPRSCKIDGEEVEFGYEDCMVVVQVPWSG---SSGLSLIEYL 776 (777)
T ss_pred EEEecCCCeEEEECCEEeeeEecCCEEEEEecCCC---cCCceeEEEe
Confidence 44555544456677777888888999999999843 3356667664
No 79
>PF14913 DPCD: DPCD protein family
Probab=24.15 E-value=3.1e+02 Score=20.46 Aligned_cols=70 Identities=9% Similarity=0.242 Sum_probs=44.2
Q ss_pred EEcCCeEEEEE-ECCCCCCcceeEEecccccccCcceEEEEeeecceEEEEEECCC----C--CccCCceEEEeCCEEEE
Q 041378 52 YEDPSHYSFIL-DMPGLEASNIKKKKGQSAENEGAVKAIRIERRRARNMRKFTLPQ----D--SNLEEVKAIYKDGVLTV 124 (145)
Q Consensus 52 ~e~~~~~~i~~-~lpG~~~e~i~V~~~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~----~--vd~~~i~A~~~~GvL~I 124 (145)
.++...|.-.+ +||. -.+--+|...++ ...++ ..-....|.+.|.+|+ . .+.+.++....|..|.|
T Consensus 92 ~dTk~~fqWRIRNLPY-P~dvYsVtvd~~-----~r~iv-vRTtNKKYyKk~~IPDl~R~~l~l~~~~ls~~h~nNTLII 164 (194)
T PF14913_consen 92 RDTKTSFQWRIRNLPY-PKDVYSVTVDED-----ERCIV-VRTTNKKYYKKFSIPDLDRCGLPLEQSALSFAHQNNTLII 164 (194)
T ss_pred EcCccceEEEEccCCC-CccceEEEEcCC-----CcEEE-EECcCccceeEecCCcHHhhCCCcchhhceeeeecCeEEE
Confidence 34445666666 5663 334444444333 11222 2224578999999994 2 36677888889999999
Q ss_pred EEeC
Q 041378 125 TVAK 128 (145)
Q Consensus 125 ~~pK 128 (145)
+..|
T Consensus 165 sYkK 168 (194)
T PF14913_consen 165 SYKK 168 (194)
T ss_pred EecC
Confidence 9987
No 80
>PF14014 DUF4230: Protein of unknown function (DUF4230)
Probab=22.72 E-value=58 Score=22.56 Aligned_cols=33 Identities=15% Similarity=0.135 Sum_probs=22.4
Q ss_pred EEEEEECCCCCccCCce---EEE--eCCEEEEEEeCcC
Q 041378 98 NMRKFTLPQDSNLEEVK---AIY--KDGVLTVTVAKKV 130 (145)
Q Consensus 98 f~r~i~LP~~vd~~~i~---A~~--~~GvL~I~~pK~~ 130 (145)
+.-...+-.++|.++++ ... +++.|+|++|..+
T Consensus 42 ~~~~g~v~~GiDLs~i~~~~i~~d~~~~~i~I~LP~~~ 79 (157)
T PF14014_consen 42 VIYPGTVKAGIDLSKIKEEDIEVDEDGKTITITLPPPE 79 (157)
T ss_pred EEEEEEEEEEEEhHHCCcceEEEcCCCCEEEEECCCcE
Confidence 33344444566777777 566 7899999999854
No 81
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=22.09 E-value=1.4e+02 Score=19.51 Aligned_cols=25 Identities=12% Similarity=0.234 Sum_probs=20.2
Q ss_pred ccccCCcceEEEcCCeEEEEEECCC
Q 041378 42 RAILRTPADIYEDPSHYSFILDMPG 66 (145)
Q Consensus 42 ~~~~~p~~~v~e~~~~~~i~~~lpG 66 (145)
+....|++.|+++++.|.|++--+.
T Consensus 21 Sv~~~P~v~I~r~g~~Y~vti~~~~ 45 (95)
T PF12992_consen 21 SVNGKPDVTIYRNGGSYKVTITYRS 45 (95)
T ss_pred ccCCCCCEEEEECCCeEEEEEEEEc
Confidence 3456799999999999999885554
No 82
>PRK01379 cyaY frataxin-like protein; Provisional
Probab=21.47 E-value=82 Score=20.93 Aligned_cols=15 Identities=7% Similarity=0.240 Sum_probs=11.6
Q ss_pred ceEEEeCCEEEEEEe
Q 041378 113 VKAIYKDGVLTVTVA 127 (145)
Q Consensus 113 i~A~~~~GvL~I~~p 127 (145)
+.+.+.+|||+|++.
T Consensus 30 ~D~e~~~gVLtl~~~ 44 (103)
T PRK01379 30 IDVDLQGDILNLDTD 44 (103)
T ss_pred eeeeccCCEEEEEeC
Confidence 567778999988864
No 83
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=21.31 E-value=79 Score=19.96 Aligned_cols=17 Identities=24% Similarity=0.387 Sum_probs=14.9
Q ss_pred CceEEEeCCEEEEEEeC
Q 041378 112 EVKAIYKDGVLTVTVAK 128 (145)
Q Consensus 112 ~i~A~~~~GvL~I~~pK 128 (145)
.+||+|.+.++++.+|.
T Consensus 2 ~vK~~~~~d~~r~~l~~ 18 (82)
T cd06407 2 RVKATYGEEKIRFRLPP 18 (82)
T ss_pred EEEEEeCCeEEEEEcCC
Confidence 47999999999999985
No 84
>PF08300 HCV_NS5a_1a: Hepatitis C virus non-structural 5a zinc finger domain; InterPro: IPR013192 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in the non-structural 5a protein (NS5a) in Hepatitis C virus. The molecular function of NS5a is uncertain, but it is phosphorylated when expressed in mammalian cells. It is thought to interact with the dsRNA dependent (interferon inducible) kinase PKR, P19525 from SWISSPROT [, ]. This region corresponds to the N-terminal zinc binding domain (1a) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003968 RNA-directed RNA polymerase activity, 0004252 serine-type endopeptidase activity, 0008270 zinc ion binding, 0017111 nucleoside-triphosphatase activity, 0006355 regulation of transcription, DNA-dependent, 0006915 apoptosis, 0030683 evasion by virus of host immune response, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane; PDB: 1ZH1_B 3FQM_A 3FQQ_B.
Probab=21.00 E-value=1.4e+02 Score=18.03 Aligned_cols=18 Identities=17% Similarity=0.254 Sum_probs=13.8
Q ss_pred CceEEEeCCEEEEEEeCc
Q 041378 112 EVKAIYKDGVLTVTVAKK 129 (145)
Q Consensus 112 ~i~A~~~~GvL~I~~pK~ 129 (145)
.|....+||-++|.-||.
T Consensus 29 ~ItGhVknG~mri~gpkt 46 (62)
T PF08300_consen 29 VITGHVKNGSMRIYGPKT 46 (62)
T ss_dssp EEEEEEETTEEEEE--TT
T ss_pred EEeEEEeCCeEEEecChh
Confidence 477889999999999984
No 85
>COG2880 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.55 E-value=9.5 Score=23.43 Aligned_cols=12 Identities=50% Similarity=0.949 Sum_probs=9.7
Q ss_pred ceEEEeCCEEEE
Q 041378 113 VKAIYKDGVLTV 124 (145)
Q Consensus 113 i~A~~~~GvL~I 124 (145)
|.|.|+||||+=
T Consensus 7 IEaiYEnGVfKP 18 (67)
T COG2880 7 IEAIYENGVLKP 18 (67)
T ss_pred HHHHHhcccccc
Confidence 668899999973
No 86
>COG1965 CyaY Protein implicated in iron transport, frataxin homolog [Inorganic ion transport and metabolism]
Probab=20.48 E-value=87 Score=21.03 Aligned_cols=16 Identities=31% Similarity=0.495 Sum_probs=13.1
Q ss_pred ceEEEeCCEEEEEEeC
Q 041378 113 VKAIYKDGVLTVTVAK 128 (145)
Q Consensus 113 i~A~~~~GvL~I~~pK 128 (145)
+-+.+.+|||+|+++.
T Consensus 30 ~D~d~qg~VlTl~f~n 45 (106)
T COG1965 30 IDCEIQGGVLTLTFDN 45 (106)
T ss_pred cceecCCCEEEEEECC
Confidence 5577789999999976
No 87
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=20.34 E-value=1.2e+02 Score=16.54 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=12.8
Q ss_pred eEEE-cCCeEEEEE-ECCCCC
Q 041378 50 DIYE-DPSHYSFIL-DMPGLE 68 (145)
Q Consensus 50 ~v~e-~~~~~~i~~-~lpG~~ 68 (145)
-|+. +++.|.+.+ ++||+-
T Consensus 5 ~i~~~~~~~y~~~~pdlpg~~ 25 (48)
T PF03681_consen 5 IIEKDEDGGYVAYFPDLPGCF 25 (48)
T ss_dssp EEEE-TSSSEEEEETTCCTCE
T ss_pred EEEECCCCeEEEEeCCccChh
Confidence 4444 666788777 788763
Done!