RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 041378
(145 letters)
>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family.
Length = 101
Score = 69.2 bits (170), Expect = 3e-16
Identities = 37/104 (35%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 50 DIYEDPSHYSFILDMPGLEASNIKKK--------KGQSAENEGAVKAIRIERRRARNMRK 101
DI ED + LD+PG + +K K KG+ + E +R ER RK
Sbjct: 1 DIKEDKDAFVVKLDVPGFKPEELKVKVEDNRVLVKGKHEKEEEDDHGLRSERSYRSFSRK 60
Query: 102 FTLPQDSNLEEVKAIYKDGVLTVTVAKKVPEVSRRPKTVTIPVS 145
F LP++++ ++VKA KDGVLTVTV K P K I +
Sbjct: 61 FVLPENADPDKVKASLKDGVLTVTVPKLEPPE---KKPRRIQIQ 101
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 88
Score = 63.7 bits (156), Expect = 2e-14
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 15/91 (16%)
Query: 50 DIYEDPSHYSFILDMPGLEASNIK------------KKKGQSAENEGAVKAIRIERRRAR 97
D+YE Y D+PG + +IK +++ E E +R ER
Sbjct: 1 DVYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGERE---EEEEEEENYLRRERSYGS 57
Query: 98 NMRKFTLPQDSNLEEVKAIYKDGVLTVTVAK 128
R F LP+D + +++KA ++GVLT+T+ K
Sbjct: 58 FSRSFRLPEDVDPDKIKASLENGVLTITLPK 88
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 146
Score = 58.5 bits (142), Expect = 8e-12
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 15/107 (14%)
Query: 48 PADIYEDPSHYSFILDMPGLEASNIK------------KKKGQSAENEGAVKAIRIERRR 95
P DI E Y ++PG++ +I+ +++ + E E +R ER
Sbjct: 42 PVDIEETDDEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGY--LRRERAY 99
Query: 96 ARNMRKFTLPQDSNLEEVKAIYKDGVLTVTVAKKVPEVSRRPKTVTI 142
R F LP+ + E +KA YK+G+LTVT+ K PE +PK + I
Sbjct: 100 GEFERTFRLPEKVDPEVIKAKYKNGLLTVTLPKAEPEEK-KPKRIEI 145
>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in
Saccharomyces cerevisiae (Sc) small heat shock protein
(Hsp)26 and similar proteins. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. ScHsp26 is
temperature-regulated, it switches from an inactive to a
chaperone-active form upon elevation in temperature. It
associates into large 24-mers storage forms which upon
heat shock disassociate into dimers. These dimers
initiate the interaction with non-native substrate
proteins and re-assemble into large globular assemblies
having one monomer of substrate bound per dimer. This
group also contains Arabidopsis thaliana (Ath) Hsp15.7,
a peroxisomal matrix protein which can complement the
morphological phenotype of S. cerevisiae mutants
deficient in Hsps26. AthHsp15.7 is minimally expressed
under normal conditions and is strongly induced by heat
and oxidative stress. Also belonging to this group is
wheat HSP16.9 which differs in quaternary structure from
the shell-type particles of ScHsp26, it assembles as a
dodecameric double disc, with each disc organized as a
trimer of dimers.
Length = 92
Score = 50.0 bits (120), Expect = 5e-09
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 11/90 (12%)
Query: 50 DIYEDPSHYSFILDMPGLEASNIK-----------KKKGQSAENEGAVKAIRIERRRARN 98
D E P + F D+PG++ ++K + + E + R+ER R
Sbjct: 3 DWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRF 62
Query: 99 MRKFTLPQDSNLEEVKAIYKDGVLTVTVAK 128
+R+F LP++++ +EVKA ++GVLTVTV K
Sbjct: 63 VRRFRLPENADADEVKAFLENGVLTVTVPK 92
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the
alpha-crystallin domain (ACD) of alpha-crystallin-type
small heat shock proteins (sHsps) and a similar domain
found in p23-like proteins. sHsps are small stress
induced proteins with monomeric masses between 12 -43
kDa, whose common feature is this ACD. sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps. p23 is a cochaperone of the Hsp90 chaperoning
pathway. It binds Hsp90 and participates in the folding
of a number of Hsp90 clients including the progesterone
receptor. p23 also has a passive chaperoning activity.
p23 in addition may act as the cytosolic prostaglandin
E2 synthase. Included in this family is the p23-like
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1) and the p23-like domains of human
butyrate-induced transcript 1 (hB-ind1), NUD (nuclear
distribution) C, Melusin, and NAD(P)H cytochrome b5
(NCB5) oxidoreductase (OR).
Length = 80
Score = 48.7 bits (117), Expect = 1e-08
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 14/86 (16%)
Query: 51 IYEDPSHYSFILDMPGLEASNIKKK--------KGQSAENEGAVKAIRIERRRARNMRKF 102
Y+ +D+PG++ +IK + G+ E E ER R F
Sbjct: 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEE------RERSYGEFERSF 54
Query: 103 TLPQDSNLEEVKAIYKDGVLTVTVAK 128
LP+D + E+ KA ++GVL +T+ K
Sbjct: 55 ELPEDVDPEKSKASLENGVLEITLPK 80
>gnl|CDD|107228 cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an
alpha crystallin domain (ACD) similar to Lactobacillus
plantarum (Lp) small heat shock proteins (sHsp) HSP
18.5, HSP 18.55 and HSP 19.3. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. Transcription
of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is
regulated by a variety of stresses including heat, cold
and ethanol. Early growing L. plantarum cells contain
elevated levels of these mRNAs which rapidly fall of as
the cells enter stationary phase. Also belonging to this
group is Bifidobacterium breve (Bb) HSP20 and Oenococcus
oenis (syn. Leuconostoc oenos) (Oo) HSP18.
Transcription of the gene encoding BbHSP20 is strongly
induced following heat or osmotic shock, and that of the
gene encoding OoHSP18 following heat, ethanol or acid
shock. OoHSP18 is peripherally associated with the
cytoplasmic membrane.
Length = 93
Score = 45.2 bits (108), Expect = 4e-07
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 13/92 (14%)
Query: 49 ADIYEDPSHYSFILDMPGLEASNIK------------KKKGQSAENEGAVKAIRIERRRA 96
DI E Y D+PG + +IK K+ E + IR ER
Sbjct: 3 TDIKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYG 62
Query: 97 RNMRKFTLPQDSNLEEVKAIYKDGVLTVTVAK 128
R F LP + + EE+KA Y++GVL +T+ K
Sbjct: 63 SFSRSFYLP-NVDEEEIKAKYENGVLKITLPK 93
>gnl|CDD|107247 cd06526, metazoan_ACD, Alpha-crystallin domain (ACD) of metazoan
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 83
Score = 31.0 bits (71), Expect = 0.063
Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 100 RKFTLPQDSNLEEVKA-IYKDGVLTVTVAK 128
R++ LP+ + + V + + DGVLT+ K
Sbjct: 54 RRYQLPEGVDPDSVTSSLSSDGVLTIEAPK 83
>gnl|CDD|216831 pfam01988, VIT1, VIT family. This family includes the vacuolar
Fe2+/Mn2+ uptake transporter, Ccc1 and the vacuolar iron
transporter VIT1.
Length = 209
Score = 26.9 bits (60), Expect = 3.6
Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 6/62 (9%)
Query: 79 SAENEGAVKAIRIERRRARNMRKFTLPQDSNLEEVKAIYKDGVLTVTVAKKVPEVSRRPK 138
+E + + E+R N + EE+ IY+ L+ +A++V +
Sbjct: 57 KSERDLEEAELEREKRELEND------PEGEREELAEIYRARGLSEELARQVARELMKKD 110
Query: 139 TV 140
+
Sbjct: 111 AL 112
>gnl|CDD|184458 PRK14021, PRK14021, bifunctional shikimate kinase/3-dehydroquinate
synthase; Provisional.
Length = 542
Score = 26.7 bits (59), Expect = 5.3
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 12 EGAEQHAG---GDKPEEMEKMLQQPGRRYVKNARAILR 46
EGA H G KP ++ + QP +R+ AR +LR
Sbjct: 195 EGAMNHLPQVLGPKPVKVALIHTQPVQRHSDRARTLLR 232
>gnl|CDD|180854 PRK07121, PRK07121, hypothetical protein; Validated.
Length = 492
Score = 26.0 bits (58), Expect = 8.3
Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 11/60 (18%)
Query: 3 GGDIDEGYAEG--AEQHAGG--DKPEEMEKMLQQPGRRYVKNARAILRTPADIYEDPSHY 58
GG I Y G A Q A G D PE M L+ V + LR + H+
Sbjct: 63 GGVI---YLGGGTAVQKAAGFEDSPENMYAYLRVAVGPGVDEEK--LRRYCE--GSVEHF 115
>gnl|CDD|152012 pfam11576, DUF3236, Protein of unknown function (DUF3236). This
family of proteins with unknown function appears to be
restricted to Methanobacteria.
Length = 154
Score = 25.4 bits (56), Expect = 9.6
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 6 IDEGYAEGAEQHAGGDKPEEMEKMLQQPGRRYVKNARAI 44
I + Y E GDK EE+E + + Y+K+A+ I
Sbjct: 5 IKKAYLESLNNTRRGDKSEEVEAI-----QEYIKSAKRI 38
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.312 0.131 0.363
Gapped
Lambda K H
0.267 0.0695 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,712,748
Number of extensions: 703759
Number of successful extensions: 533
Number of sequences better than 10.0: 1
Number of HSP's gapped: 527
Number of HSP's successfully gapped: 31
Length of query: 145
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 57
Effective length of database: 7,034,450
Effective search space: 400963650
Effective search space used: 400963650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (24.6 bits)