RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 041378
(145 letters)
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 83.9 bits (208), Expect = 8e-22
Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 18/126 (14%)
Query: 33 PGRRYVKNARAILRTPADIYEDPSHYSFILDMPGLEASNIK-------------KKKGQS 79
A D E P + F D+PG++ +K ++ +
Sbjct: 30 AISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEK 89
Query: 80 AENEGAVKAIRIERRRARNMRKFTLPQDSNLEEVKAIYKDGVLTVTVAKKVPEVSRRPKT 139
+ K R+ER + +R+F L +D+ +EEVKA ++GVLTVTV K + +P+
Sbjct: 90 EDKND--KWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVK---KPEV 144
Query: 140 VTIPVS 145
I +S
Sbjct: 145 KAIQIS 150
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 74.1 bits (183), Expect = 2e-18
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 14/94 (14%)
Query: 48 PADIYEDPSHYSFILDMPGLEASNIK------------KKKGQSAENEGAVKAIRIERRR 95
DI E+ +H+ D+PG++ S I+ ++K +S+ + RIERR
Sbjct: 6 RVDIKEEVNHFVLYADLPGIDPSQIEVQMDKGILSIRGERKSESSTETE--RFSRIERRY 63
Query: 96 ARNMRKFTLPQDSNLEEVKAIYKDGVLTVTVAKK 129
R+F LP ++ + + A ++GVL + + K+
Sbjct: 64 GSFHRRFALPDSADADGITAAGRNGVLEIRIPKR 97
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 74.0 bits (182), Expect = 9e-18
Identities = 23/131 (17%), Positives = 36/131 (27%), Gaps = 14/131 (10%)
Query: 23 PEEMEKMLQQPGRRYVKNARAILRTPADIYEDPSHYSFILDMPGLEASN----------- 71
++ P P I E H I +PG+ +
Sbjct: 33 TPLPPAAIESPAVAAGIQISGKGFMPISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLE 92
Query: 72 IKKKKGQSAENEGAVKAIRIERRRARNMRKFTLPQDSNLEEVKAIYKDGVLTVTVAKKVP 131
I+ K+ E R LP E A +++GVL+V + K
Sbjct: 93 IRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKFENGVLSVILPKAES 152
Query: 132 EVSRRPKTVTI 142
K + I
Sbjct: 153 S---IKKGINI 160
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 71.5 bits (176), Expect = 4e-17
Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 12/122 (9%)
Query: 24 EEMEKMLQQPGRRYVKNARAILRTPADIYEDPSHYSFILDMPGLEASNIK---------K 74
+ K LQ+ + ++ P D+YE+ + + D+ G IK
Sbjct: 2 YYLGKELQKRSEELSRGFYELVYPPVDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELI 61
Query: 75 KKGQSAENEGAVKAIRIERRRARNMRKFTLPQDSNLEE-VKAIYKDGVLTVTVAKKVPEV 133
+ + E + +R + LP + + + Y++GVLT+ + V
Sbjct: 62 IEAEREITEP--GVKYLTQRPKYVRKVIRLPYNVAKDAEISGKYENGVLTIRIPIAGTSV 119
Query: 134 SR 135
+
Sbjct: 120 FK 121
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 57.2 bits (138), Expect = 8e-12
Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 4/102 (3%)
Query: 48 PADIYEDPSHYSFILDMPGLEASNIK-KKKGQSAENEGAVKAIRIERRRARN--MRKFTL 104
+++ D + LD+ ++ K + E G + + R++ L
Sbjct: 4 ISEVRSDRDKFVIFLDVKHFSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRYRL 63
Query: 105 PQDSNLEEVKA-IYKDGVLTVTVAKKVPEVSRRPKTVTIPVS 145
P + + + + DG+LT + K V IPVS
Sbjct: 64 PSNVDQSALSCSLSADGMLTFSGPKIPSGVDAGHSERAIPVS 105
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 52.9 bits (127), Expect = 4e-10
Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 10/97 (10%)
Query: 49 ADIYEDPSHYSFILDMPGLEASNIKKKKGQSAENEGAVKAIRIERRRARN------MRKF 102
A + DP ++S +LD+ I K + V A ER R++
Sbjct: 4 AQVPTDPGYFSVLLDVKHFSPEEISVK---VVGDHVEVHARHEERPDEHGFIAREFHRRY 60
Query: 103 TLPQDSNLEEVKA-IYKDGVLTVTVAKKVPEVSRRPK 138
LP + V + + +GVL++ + S
Sbjct: 61 RLPPGVDPAAVTSALSPEGVLSIQATPASAQASLPSP 97
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 53.0 bits (127), Expect = 1e-09
Identities = 22/118 (18%), Positives = 44/118 (37%), Gaps = 14/118 (11%)
Query: 35 RRYVKNARAILRTPADIYEDPSHYSFILDMPGLEASNIKKKKGQSAENEGAVKAIRIERR 94
+++ +++ + +S LD+ +K + + V ER+
Sbjct: 52 PSFLRAPSWFDTGLSEMRLEKDRFSVNLDVKHFSPEELK---VKVLGDVIEVHGKHEERQ 108
Query: 95 RARN------MRKFTLPQDSNLEEVKA-IYKDGVLTVTVAKKVPEVSRRPKTVTIPVS 145
RK+ +P D + + + + DGVLTV +K R TIP++
Sbjct: 109 DEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPER----TIPIT 162
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 45.9 bits (109), Expect = 1e-07
Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 10/91 (10%)
Query: 53 EDPSHYSFILDMPGLEASNIKKKKGQSAENEGAVKAIRIERRRARN------MRKFTLPQ 106
+ +S LD+ +K K + V ER+ RK+ +P
Sbjct: 3 MEKDRFSVNLDVKHFSPEELKVK---VLGDVIEVHGKHEERQDEHGFISREFHRKYRIPA 59
Query: 107 DSNLEEVKA-IYKDGVLTVTVAKKVPEVSRR 136
D + + + + DGVLTV +K R
Sbjct: 60 DVDPLTITSSMSSDGVLTVNGPRKQVSGPER 90
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 42.3 bits (100), Expect = 2e-06
Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 4/81 (4%)
Query: 53 EDPSHYSFILDMPGLEASNIK-KKKGQSAENEGAVKAIRIERRRARNM--RKFTLPQDSN 109
+ LD+ + K K E G A + E RK+TLP +
Sbjct: 4 HTADRWRVSLDVNHFAPDELTVKTKDGVVEITGKHAARQDEHGYISRCFTRKYTLPPGVD 63
Query: 110 LEEVKA-IYKDGVLTVTVAKK 129
+V + + +G LTV
Sbjct: 64 PTQVSSSLSPEGTLTVEAPMP 84
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 40.2 bits (93), Expect = 8e-05
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 100 RKFTLPQDSNLEEVKAIYKDGVLTVTV 126
+ F P+ + + +A DG++ V
Sbjct: 284 KAFVTPEVVDASKTQAEIVDGLMVVEA 310
Score = 34.4 bits (78), Expect = 0.007
Identities = 18/122 (14%), Positives = 35/122 (28%), Gaps = 8/122 (6%)
Query: 24 EEMEKMLQQPGRRYVKNAR-AILRTPADIYE----DPSHYSFILDMPGLEASNIK-KKKG 77
+EM + + ++ + L D YE H+ ++ +A I K
Sbjct: 75 KEMSAIQPREFHPELEYTQPGELDFLKDAYEVGKDGRLHFKVYFNVKNFKAEEITIKADK 134
Query: 78 QSAENEGAVKAIRIERRRARN-MRKFTLPQDSNLEEVKAIY-KDGVLTVTVAKKVPEVSR 135
+ + + R LP + ++A D VL + P
Sbjct: 135 NKLVVRAQKSVACGDAAMSESVGRSIPLPPSVDRNHIQATITTDDVLVIEAPVNEPNYKA 194
Query: 136 RP 137
Sbjct: 195 IK 196
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; HET: MSE; 1.30A {Escherichia coli}
SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A
Length = 338
Score = 30.0 bits (68), Expect = 0.20
Identities = 19/115 (16%), Positives = 30/115 (26%), Gaps = 6/115 (5%)
Query: 5 DIDEGYAEGAEQHAGGDKPEEMEKMLQQPGRRYVKNARAILRTPADIYEDPSHYSFILDM 64
DE G + L ++ VK L E + + D
Sbjct: 123 PDDERVLLGVAGFQARAALANLFSELPSKEKQVVKEGATTLLWFEHPAE---RFLIVTDE 179
Query: 65 PGLEASNIKKKKGQSAENEGAVKAIRIERRRARNMRKF---TLPQDSNLEEVKAI 116
K + N A+ IE +PQ +NL+ + I
Sbjct: 180 ATANMLTDKLRGEAELNNSQQWLALNIEAGFPVIDAANSGQFIPQATNLQALGGI 234
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics,
PSI-2, protein STR initiative; HET: NAD GOL; 1.80A
{Mycobacterium tuberculosis}
Length = 495
Score = 28.6 bits (65), Expect = 0.81
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 6 IDEGYAEGAEQHAGGDKPEEMEK 28
I +G EGA GG +PE ++
Sbjct: 343 IAKGIEEGARLVCGGGRPEGLDN 365
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine
aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD;
2.15A {Pisum sativum} PDB: 3iwk_A* 4a0m_A*
Length = 503
Score = 27.5 bits (62), Expect = 1.9
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 6 IDEGYAEGAEQHAGGDKPEEMEK 28
+ +EGA GG +PE ++K
Sbjct: 349 VSNAKSEGATILTGGSRPEHLKK 371
>3brc_A Conserved protein of unknown function; methanobacterium
thermoautotrophicum, STR genomics, MCSG, PSI-2; 1.60A
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 156
Score = 26.1 bits (57), Expect = 3.9
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 6 IDEGYAEGAEQHAGGDKPEEMEKMLQQPGRRYVKNARAIL 45
I + Y E AE GD+ EE+E + R+Y+++AR +
Sbjct: 6 IGKAYLESAEDRRRGDRSEEVEAI-----RKYIRSARRTV 40
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase,
decarboxylation, flavin protein, oxidoreductase; HET:
FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB:
2r0n_A* 1sir_A* 2r0m_A*
Length = 392
Score = 26.4 bits (59), Expect = 4.1
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 8/37 (21%)
Query: 49 ADIY------EDPSHYSFIL--DMPGLEASNIKKKKG 77
AD++ ED F+L M GL A I+ K
Sbjct: 173 ADLFVVWARCEDGCIRGFLLEKGMRGLSAPRIQGKFS 209
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi
aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia
lamblia atcc 50803}
Length = 451
Score = 25.9 bits (56), Expect = 5.9
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Query: 60 FILDMPGLEASNIKKKK---GQSAENEGAVKAIRIERRRARNMRKFTLPQDSNLEEVKAI 116
++ D P + I + G+ E E + + + + D+ LE++KA
Sbjct: 344 YLTDTPAQIKNKINRYAFSGGRDTEEEHRAFGADLSVDVSVRYLEVFMKDDAELEKLKAD 403
Query: 117 YKDGVLT 123
YK G L
Sbjct: 404 YKTGKLL 410
>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC;
HET: NAD; 2.10A {Thermus thermophilus}
Length = 515
Score = 25.6 bits (57), Expect = 7.7
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 6 IDEGYAEGAEQHAGGDKPEEMEKMLQQPGRRYVK 39
++ G EGA GG++ + + Y+
Sbjct: 360 VEAGKREGARLLVGGERAKTSFRGEDLSRGNYLL 393
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.131 0.363
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,336,309
Number of extensions: 138986
Number of successful extensions: 291
Number of sequences better than 10.0: 1
Number of HSP's gapped: 277
Number of HSP's successfully gapped: 39
Length of query: 145
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 60
Effective length of database: 4,328,508
Effective search space: 259710480
Effective search space used: 259710480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (23.9 bits)