RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 041378
         (145 letters)



>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score = 64.0 bits (155), Expect = 2e-14
 Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 14/136 (10%)

Query: 21  DKPEEMEKMLQQPGRRYVKNARAILRTPADIYEDPSHYSFILDMPGLEASNIK------- 73
             P +  + +            A      D  E P  + F  D+PG++   +K       
Sbjct: 17  ADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGN 76

Query: 74  ----KKKGQSAENEGAVKAIRIERRRARNMRKFTLPQDSNLEEVKAIYKDGVLTVTVAKK 129
                 +    + +   K  R+ER   + +R+F L +D+ +EEVKA  ++GVLTVTV K 
Sbjct: 77  VLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKA 136

Query: 130 VPEVSRRPKTVTIPVS 145
             +   +P+   I +S
Sbjct: 137 EVK---KPEVKAIQIS 149


>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 60.4 bits (146), Expect = 2e-13
 Identities = 22/106 (20%), Positives = 32/106 (30%), Gaps = 14/106 (13%)

Query: 48  PADIYEDPSHYSFILDMPGLEASNIK-----------KKKGQSAENEGAVKAIRIERRRA 96
           P  I E   H   I  +PG+   +I             K+      E             
Sbjct: 12  PISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEE 71

Query: 97  RNMRKFTLPQDSNLEEVKAIYKDGVLTVTVAKKVPEVSRRPKTVTI 142
              R   LP     E   A +++GVL+V + K         K + I
Sbjct: 72  EIYRTIKLPATVKEENASAKFENGVLSVILPKAESS---IKKGINI 114


>d1vlya2 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-terminal
           domain {Escherichia coli [TaxId: 562]}
          Length = 241

 Score = 25.3 bits (54), Expect = 3.2
 Identities = 15/114 (13%), Positives = 29/114 (25%), Gaps = 3/114 (2%)

Query: 6   IDEGYAEGAEQHAGGDKPEEMEKMLQQPGRRYVKNARAILRTPADIYEDPSHYSFILDMP 65
           I           AG      +  +  +   +  +  +    T          +  + D  
Sbjct: 107 IAPDDERVLLGVAGFQARAALANLFSELPSKEKQVVKEGATTLLWFEHPAERFLIVTDEA 166

Query: 66  GLEASNIKKKKGQSAENEGAVKAIRIERRRAR---NMRKFTLPQDSNLEEVKAI 116
                  K +      N     A+ IE              +PQ +NL+ +  I
Sbjct: 167 TANMLTDKLRGEAELNNSQQWLALNIEAGFPVIDAANSGQFIPQATNLQALGGI 220


>d1uf2a_ e.28.1.2 (A:) RDV p3 {Rice dwarf virus [TaxId: 10991]}
          Length = 967

 Score = 25.0 bits (54), Expect = 5.2
 Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 13/109 (11%)

Query: 45  LRTPADIYEDPSHYSFILDM-PGLE--ASN--IKKKKGQSAENEGAVKAIRIERRRARNM 99
           LR      ++ S+   + DM  GL   +S+  ++   G+S   EG + AI++   RA+  
Sbjct: 772 LRLQRRRVDNTSYTDSLSDMFNGLRSISSSEFVRSVNGRSVFTEGRIDAIKVN-MRAKFD 830

Query: 100 RKFTLPQDSNLEEV---KAIYKDGVLTVTVAKKVPEVSRRPKTVTIPVS 145
            +F   +    +     K ++ D +  +   K       RP  +T+P++
Sbjct: 831 LQFITEEGGYSKPPNVKKLMFSDFLSFLDSHKSDY----RPPLLTVPIT 875


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.131    0.363 

Gapped
Lambda     K      H
   0.267   0.0634    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 556,128
Number of extensions: 25352
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 6
Length of query: 145
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 68
Effective length of database: 1,350,386
Effective search space: 91826248
Effective search space used: 91826248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 49 (22.9 bits)