BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041379
(85 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q05462|RL27_PEA 60S ribosomal protein L27 OS=Pisum sativum GN=RPL27 PE=2 SV=1
Length = 135
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/111 (58%), Positives = 69/111 (62%), Gaps = 31/111 (27%)
Query: 6 IVKSFDDRTRERPNGHCL-------------------------------LVSYQHLMPTR 34
IVK+FDD TRE+P GHCL LV+YQHLMPTR
Sbjct: 25 IVKTFDDGTREKPYGHCLVAGIKKFPSKVIKKDSAKKTAKKSRVKAFVKLVNYQHLMPTR 84
Query: 35 YTLDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
YTLDVDLK V D LQSKDKK+ A KETKK LEERFKT KNRWFFTKLRF
Sbjct: 85 YTLDVDLKDAVVPDVLQSKDKKVTALKETKKSLEERFKTGKNRWFFTKLRF 135
>sp|P51419|RL273_ARATH 60S ribosomal protein L27-3 OS=Arabidopsis thaliana GN=RPL27C PE=2
SV=2
Length = 135
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/111 (56%), Positives = 69/111 (62%), Gaps = 31/111 (27%)
Query: 6 IVKSFDDRTRERPNGHCL-------------------------------LVSYQHLMPTR 34
I+KSFDD R+RP GHCL LV+YQHLMPTR
Sbjct: 25 IIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTR 84
Query: 35 YTLDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
YTLDVDLK V T D+LQSKDKK+ A KE K +LEERFKT KNRWFFTKLRF
Sbjct: 85 YTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEERFKTGKNRWFFTKLRF 135
>sp|Q8LCL3|RL272_ARATH 60S ribosomal protein L27-2 OS=Arabidopsis thaliana GN=RPL27B PE=2
SV=2
Length = 135
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/111 (54%), Positives = 68/111 (61%), Gaps = 31/111 (27%)
Query: 6 IVKSFDDRTRERPNGHCL-------------------------------LVSYQHLMPTR 34
I+KSFDD T +R GHCL LV+YQHLMPTR
Sbjct: 25 IIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTR 84
Query: 35 YTLDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
YTLDVDLK V T D+L+SKDKK+ A KE K +LEERFKT KNRWFFTKLRF
Sbjct: 85 YTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEERFKTGKNRWFFTKLRF 135
>sp|Q9SKX8|RL271_ARATH 60S ribosomal protein L27-1 OS=Arabidopsis thaliana GN=RPL27A PE=2
SV=1
Length = 135
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 68/111 (61%), Gaps = 31/111 (27%)
Query: 6 IVKSFDDRTRERPNGHCLL-------------------------------VSYQHLMPTR 34
IVKSFDD T E+ GHCL+ ++YQH+MPTR
Sbjct: 25 IVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFFKVINYQHVMPTR 84
Query: 35 YTLDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
YTLD+DLK VV+AD++ SKDKK+ A KE K + EERFKT KNRWFFTKLRF
Sbjct: 85 YTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEERFKTGKNRWFFTKLRF 135
>sp|P41101|RL27_SOLTU 60S ribosomal protein L27 OS=Solanum tuberosum GN=RPL27 PE=2 SV=1
Length = 138
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 67/115 (58%), Gaps = 36/115 (31%)
Query: 6 IVKSFDDRTRERPNGHCL-------------------------------LVSYQHLMPTR 34
IV++FD+ TR+RP GHCL LV+Y H+MPTR
Sbjct: 25 IVRAFDEGTRDRPYGHCLVAGISRYPKKVIRKDSAKKAGKKSRVKAFIKLVNYNHIMPTR 84
Query: 35 YTLDVDLKVVV----TADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
YTLD DLK VV AD LQ++DKK+ A + TK RL ERFKT KNRWFFTKLRF
Sbjct: 85 YTLDEDLKDVVKDVVNADVLQARDKKVTA-RRTKARLAERFKTGKNRWFFTKLRF 138
>sp|Q02984|RL27_PYRST 60S ribosomal protein L27 OS=Pyrobotrys stellata GN=RPL27 PE=2 SV=1
Length = 134
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 61/111 (54%), Gaps = 32/111 (28%)
Query: 6 IVKSFDDRTRERPNGHCLLVS-------------------------------YQHLMPTR 34
IV++FDD T RP GH L+V Y HLMPTR
Sbjct: 25 IVRNFDDGTSSRPYGHALVVGLQKEPRKVTKRQSQKKQAKKSTLKTFIKTVNYNHLMPTR 84
Query: 35 YTLDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
YTLDVD K V A++ ++ KK+ A KE KK LEE+FKT KNRWFFTKLRF
Sbjct: 85 YTLDVDFKGVA-AEAQENPTKKVEARKECKKLLEEKFKTGKNRWFFTKLRF 134
>sp|P61359|RL27_HIPCM 60S ribosomal protein L27 OS=Hippocampus comes GN=rpl27 PE=2 SV=2
Length = 136
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 53/112 (47%), Gaps = 32/112 (28%)
Query: 6 IVKSFDDRTRERPNGHCLLVS-------------------------------YQHLMPTR 34
IVK+ DD T +RP H L+ Y HLMPTR
Sbjct: 25 IVKNIDDGTADRPYSHALVAGIDRYPRKVTAPMGKKKIAKRSKIKAFVKVYNYNHLMPTR 84
Query: 35 YTLDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
Y++D+ L K VV D + K A +E K + EER+KT KN+WFF KLRF
Sbjct: 85 YSVDIPLDKTVVNKDVFRDPALKSKARREAKVKFEERYKTGKNKWFFQKLRF 136
>sp|Q7ZV82|RL27_DANRE 60S ribosomal protein L27 OS=Danio rerio GN=rpl27 PE=2 SV=3
Length = 136
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 53/112 (47%), Gaps = 32/112 (28%)
Query: 6 IVKSFDDRTRERPNGHCLLVS-------------------------------YQHLMPTR 34
IVK+ DD T +RP H L+ Y HLMPTR
Sbjct: 25 IVKNIDDGTADRPYSHALVAGIDRYPRKVTATMGKKKIAKRSKIKAFVKVFNYNHLMPTR 84
Query: 35 YTLDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
Y++D+ L K VV D + K A +E K + EER+KT KN+WFF KLRF
Sbjct: 85 YSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136
>sp|P61354|RL27_RAT 60S ribosomal protein L27 OS=Rattus norvegicus GN=Rpl27 PE=2 SV=2
Length = 136
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 53/112 (47%), Gaps = 32/112 (28%)
Query: 6 IVKSFDDRTRERPNGHCLLVS-------------------------------YQHLMPTR 34
IVK+ DD T +RP H L+ Y HLMPTR
Sbjct: 25 IVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTR 84
Query: 35 YTLDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
Y++D+ L K VV D + K A +E K + EER+KT KN+WFF KLRF
Sbjct: 85 YSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136
>sp|A1XQU5|RL27_PIG 60S ribosomal protein L27 OS=Sus scrofa GN=RPL27 PE=2 SV=1
Length = 136
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 53/112 (47%), Gaps = 32/112 (28%)
Query: 6 IVKSFDDRTRERPNGHCLLVS-------------------------------YQHLMPTR 34
IVK+ DD T +RP H L+ Y HLMPTR
Sbjct: 25 IVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTR 84
Query: 35 YTLDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
Y++D+ L K VV D + K A +E K + EER+KT KN+WFF KLRF
Sbjct: 85 YSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136
>sp|P61358|RL27_MOUSE 60S ribosomal protein L27 OS=Mus musculus GN=Rpl27 PE=2 SV=2
Length = 136
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 53/112 (47%), Gaps = 32/112 (28%)
Query: 6 IVKSFDDRTRERPNGHCLLVS-------------------------------YQHLMPTR 34
IVK+ DD T +RP H L+ Y HLMPTR
Sbjct: 25 IVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTR 84
Query: 35 YTLDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
Y++D+ L K VV D + K A +E K + EER+KT KN+WFF KLRF
Sbjct: 85 YSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136
>sp|Q4R8Z4|RL27_MACFA 60S ribosomal protein L27 OS=Macaca fascicularis GN=RPL27 PE=2 SV=1
Length = 136
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 53/112 (47%), Gaps = 32/112 (28%)
Query: 6 IVKSFDDRTRERPNGHCLLVS-------------------------------YQHLMPTR 34
IVK+ DD T +RP H L+ Y HLMPTR
Sbjct: 25 IVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTR 84
Query: 35 YTLDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
Y++D+ L K VV D + K A +E K + EER+KT KN+WFF KLRF
Sbjct: 85 YSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136
>sp|P61353|RL27_HUMAN 60S ribosomal protein L27 OS=Homo sapiens GN=RPL27 PE=1 SV=2
Length = 136
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 53/112 (47%), Gaps = 32/112 (28%)
Query: 6 IVKSFDDRTRERPNGHCLLVS-------------------------------YQHLMPTR 34
IVK+ DD T +RP H L+ Y HLMPTR
Sbjct: 25 IVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTR 84
Query: 35 YTLDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
Y++D+ L K VV D + K A +E K + EER+KT KN+WFF KLRF
Sbjct: 85 YSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136
>sp|P61355|RL27_CHICK 60S ribosomal protein L27 OS=Gallus gallus GN=RPL27 PE=2 SV=2
Length = 136
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 53/112 (47%), Gaps = 32/112 (28%)
Query: 6 IVKSFDDRTRERPNGHCLLVS-------------------------------YQHLMPTR 34
IVK+ DD T +RP H L+ Y HLMPTR
Sbjct: 25 IVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTR 84
Query: 35 YTLDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
Y++D+ L K VV D + K A +E K + EER+KT KN+WFF KLRF
Sbjct: 85 YSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136
>sp|P61357|RL27_CERNI 60S ribosomal protein L27 OS=Cervus nippon GN=RPL27 PE=2 SV=2
Length = 136
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 53/112 (47%), Gaps = 32/112 (28%)
Query: 6 IVKSFDDRTRERPNGHCLLVS-------------------------------YQHLMPTR 34
IVK+ DD T +RP H L+ Y HLMPTR
Sbjct: 25 IVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTR 84
Query: 35 YTLDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
Y++D+ L K VV D + K A +E K + EER+KT KN+WFF KLRF
Sbjct: 85 YSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136
>sp|P61356|RL27_BOVIN 60S ribosomal protein L27 OS=Bos taurus GN=RPL27 PE=2 SV=2
Length = 136
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 53/112 (47%), Gaps = 32/112 (28%)
Query: 6 IVKSFDDRTRERPNGHCLLVS-------------------------------YQHLMPTR 34
IVK+ DD T +RP H L+ Y HLMPTR
Sbjct: 25 IVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTR 84
Query: 35 YTLDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
Y++D+ L K VV D + K A +E K + EER+KT KN+WFF KLRF
Sbjct: 85 YSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136
>sp|P91914|RL27_CAEEL 60S ribosomal protein L27 OS=Caenorhabditis elegans GN=rpl-27 PE=2
SV=1
Length = 136
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Query: 8 KSFDDRTRERPNGHCLLVSYQHLMPTRYTLDVDL-KVVVTADSLQSKDKKMIACKETKKR 66
K + R + +P +VSY HL+PTRY++DV K + ++L++ KK A E K +
Sbjct: 60 KKIEKRNKLKP--FLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSK 117
Query: 67 LEERFKTSKNRWFFTKLRF 85
EER+KT KN+WFFTKLRF
Sbjct: 118 FEERYKTGKNKWFFTKLRF 136
>sp|Q90YU1|RL27_ICTPU 60S ribosomal protein L27 OS=Ictalurus punctatus GN=rpl27 PE=2 SV=3
Length = 136
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 54/112 (48%), Gaps = 32/112 (28%)
Query: 6 IVKSFDDRTRERPNGHCLL-------------------------------VSYQHLMPTR 34
IVK+ DD T +RP H L+ +Y HLMPTR
Sbjct: 25 IVKNIDDGTADRPYSHALVSGIDRYPRKVTATMGKKKVAKRSKIKAFVKVFNYNHLMPTR 84
Query: 35 YTLDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
Y++D+ L K +V D + K A +E K + EER+KT KN+WFF KLRF
Sbjct: 85 YSVDIPLDKTIVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136
>sp|Q9XSU7|RL27_CANFA 60S ribosomal protein L27 OS=Canis familiaris GN=RPL27 PE=2 SV=3
Length = 136
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 53/112 (47%), Gaps = 32/112 (28%)
Query: 6 IVKSFDDRTRERPNGHCLLVS-------------------------------YQHLMPTR 34
IVK+ DD T +RP H L+ Y HLMPTR
Sbjct: 25 IVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTR 84
Query: 35 YTLDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
Y++D+ L K VV D + K A +E K + EE++KT KN+WFF KLRF
Sbjct: 85 YSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEEKYKTGKNKWFFQKLRF 136
>sp|P0C2H7|RL27B_YEAST 60S ribosomal protein L27-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL27B PE=1 SV=1
Length = 136
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 55/112 (49%), Gaps = 32/112 (28%)
Query: 6 IVKSFDDRTRERPNGHCLL-------------------------------VSYQHLMPTR 34
IVK D+ ++ P GH L+ V+Y HL+PTR
Sbjct: 25 IVKPHDEGSKSHPFGHALVAGIERYPSKVTKKHGAKKVAKRTKIKPFIKVVNYNHLLPTR 84
Query: 35 YTLDVD-LKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
YTLDV+ K VV+ ++ + ++ A K KK EER + KN+WFF+KLRF
Sbjct: 85 YTLDVEAFKSVVSTETFEQPSQREEAKKVVKKAFEERHQAGKNQWFFSKLRF 136
>sp|P0C2H6|RL27A_YEAST 60S ribosomal protein L27-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL27A PE=1 SV=1
Length = 136
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 55/112 (49%), Gaps = 32/112 (28%)
Query: 6 IVKSFDDRTRERPNGHCLL-------------------------------VSYQHLMPTR 34
IVK D+ ++ P GH L+ V+Y HL+PTR
Sbjct: 25 IVKPHDEGSKSHPFGHALVAGIERYPLKVTKKHGAKKVAKRTKIKPFIKVVNYNHLLPTR 84
Query: 35 YTLDVD-LKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
YTLDV+ K VV+ ++ + ++ A K KK EER + KN+WFF+KLRF
Sbjct: 85 YTLDVEAFKSVVSTETFEQPSQREEAKKVVKKAFEERHQAGKNQWFFSKLRF 136
>sp|O14388|RL27A_SCHPO 60S ribosomal protein L27-A OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl27a PE=2 SV=2
Length = 136
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 3/74 (4%)
Query: 13 RTRERPNGHCLLVSYQHLMPTRYTLDVD-LKVVVTADSLQSKDKKMIACKETKKRLEERF 71
R+R +P +V+Y HLMPTRY L++D LK ++TAD+ + ++ A K KK EE++
Sbjct: 65 RSRVKP--FIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSAARKTVKKTFEEKY 122
Query: 72 KTSKNRWFFTKLRF 85
++ K+ WFFT LRF
Sbjct: 123 QSGKSAWFFTPLRF 136
>sp|Q9P843|RL27_CANAX 60S ribosomal protein L27 OS=Candida albicans GN=RPL27 PE=2 SV=1
Length = 136
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 24 LVSYQHLMPTRYTLDVD-LKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTK 82
LV+Y HLMPTRY+LDV+ K VT+++L+ ++ A K KK EE+ + KN+WFF K
Sbjct: 74 LVNYNHLMPTRYSLDVESFKSAVTSEALEEPSQREEAKKVVKKAFEEKHQAGKNKWFFQK 133
Query: 83 LRF 85
L F
Sbjct: 134 LHF 136
>sp|O74538|RL27B_SCHPO 60S ribosomal protein L27-B OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl27b PE=3 SV=1
Length = 136
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 7 VKSFDDRTRERPNGHCLLVSYQHLMPTRYTLDVD-LKVVVTADSLQSKDKKMIACKETKK 65
K R+R +P +++Y HLMPTRY L++D LK +VT + ++ A K K
Sbjct: 59 AKRIAKRSRVKP--FIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSAAKKTVKN 116
Query: 66 RLEERFKTSKNRWFFTKLRF 85
EE+++T K+ WFFT LRF
Sbjct: 117 TFEEKYQTGKSAWFFTPLRF 136
>sp|Q55BE6|RL27_DICDI 60S ribosomal protein L27 OS=Dictyostelium discoideum GN=rpl27 PE=3
SV=1
Length = 144
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 51/120 (42%), Gaps = 41/120 (34%)
Query: 6 IVKSFDDRT--RERPNGHCLL-------------------------------VSYQHLMP 32
++K+FDD T + RP GHCL+ V+Y H+MP
Sbjct: 26 VIKTFDDATASKSRPYGHCLVAGIDKYPRSIVRSMSRKTILKRTAIRSFVKVVNYNHIMP 85
Query: 33 TRYTLD-------VDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
TRY + LK VT +S Q + KK E + K K++WFF+KLRF
Sbjct: 86 TRYNFEGRDESAFTGLKNTVTVESSQVAKRAHTRL-AVKKIFEAKHKAGKSKWFFSKLRF 144
>sp|P0DJ19|RL27_TETTH 60S ribosomal protein L27 OS=Tetrahymena thermophila GN=RPL27 PE=1
SV=1
Length = 144
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 44/122 (36%)
Query: 6 IVKSFDDRTRERPNGHCLL-------------------------------VSYQHLMPTR 34
IVKS +D T++R GH L+ V+ H+MPTR
Sbjct: 25 IVKSSEDGTKDRKFGHVLVAGVERSPKKVTKRMGSKKIQKRTSVKPFIKYVNLNHIMPTR 84
Query: 35 YTLD--VDLKVVVTADSLQSKDKKMIACKET-KKRLEERFKT--------SKNRWFFTKL 83
Y++ D K +V D +++ K + ++T KK E+++T S ++FF+KL
Sbjct: 85 YSVKELCDFKELVKEDKIKNNAKSEV--RDTLKKVFVEKYRTINPEEKSASHTKFFFSKL 142
Query: 84 RF 85
RF
Sbjct: 143 RF 144
>sp|O67914|UPP_AQUAE Uracil phosphoribosyltransferase OS=Aquifex aeolicus (strain VF5)
GN=upp PE=1 SV=1
Length = 208
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 23 LLVSYQHLMPTRYTLDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFK 72
++V ++ T TL+V L+ ++ L+ K IA E KR+EE+FK
Sbjct: 123 IVVILDPMLATGGTLEVALREILKHSPLKVKSVHAIAAPEGLKRIEEKFK 172
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,557,193
Number of Sequences: 539616
Number of extensions: 943452
Number of successful extensions: 3206
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3137
Number of HSP's gapped (non-prelim): 51
length of query: 85
length of database: 191,569,459
effective HSP length: 56
effective length of query: 29
effective length of database: 161,350,963
effective search space: 4679177927
effective search space used: 4679177927
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)