Query 041379
Match_columns 85
No_of_seqs 105 out of 207
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 06:30:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041379.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041379hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00471 60S ribosomal protein 100.0 2.3E-48 4.9E-53 269.5 8.8 84 1-85 20-134 (134)
2 KOG3418 60S ribosomal protein 100.0 8.2E-44 1.8E-48 246.6 6.7 85 1-85 20-136 (136)
3 PF01777 Ribosomal_L27e: Ribos 100.0 1.4E-35 3E-40 192.3 -6.8 62 24-85 23-85 (85)
4 COG2163 RPL14A Ribosomal prote 98.7 7.8E-09 1.7E-13 71.3 1.9 74 1-76 20-124 (125)
5 PRK04333 50S ribosomal protein 96.8 0.002 4.3E-08 41.7 3.9 33 1-40 19-63 (84)
6 PTZ00065 60S ribosomal protein 95.8 0.016 3.4E-07 40.4 4.0 34 1-41 23-68 (130)
7 PF01929 Ribosomal_L14e: Ribos 73.3 2.3 4.9E-05 27.0 1.4 18 24-41 4-21 (77)
8 PRK14014 putative acyltransfer 56.6 31 0.00068 26.3 5.1 29 41-69 257-285 (301)
9 PF02491 SHS2_FTSA: SHS2 domai 43.7 15 0.00033 22.3 1.4 12 28-39 45-56 (80)
10 PF03748 FliL: Flagellar basal 28.9 79 0.0017 19.3 2.9 30 46-75 58-87 (99)
11 COG3579 PepC Aminopeptidase C 26.6 1.3E+02 0.0028 24.9 4.3 17 7-23 260-276 (444)
12 cd02860 Pullulanase_N_term Pul 26.3 38 0.00083 21.1 1.1 6 35-40 90-95 (100)
13 PF13862 BCIP: p21-C-terminal 23.8 81 0.0018 22.7 2.6 26 5-31 50-75 (194)
14 PRK07718 fliL flagellar basal 23.6 1.1E+02 0.0024 20.8 3.1 29 47-75 102-130 (142)
15 COG1580 FliL Flagellar basal b 23.2 96 0.0021 22.0 2.8 28 47-74 118-145 (159)
16 PF11061 DUF2862: Protein of u 23.0 40 0.00087 20.9 0.7 11 72-82 50-60 (64)
17 PF12563 Hemolysin_N: Hemolyti 22.5 1.4E+02 0.0029 22.2 3.5 19 49-71 85-103 (187)
18 PF11982 DUF3483: Domain of un 22.2 29 0.00063 26.3 -0.0 10 31-40 45-54 (224)
19 PRK07021 fliL flagellar basal 21.9 1.7E+02 0.0037 20.2 3.8 28 47-74 118-145 (162)
20 PF06437 ISN1: IMP-specific 5' 20.0 43 0.00094 27.5 0.5 12 31-42 1-12 (408)
No 1
>PTZ00471 60S ribosomal protein L27; Provisional
Probab=100.00 E-value=2.3e-48 Score=269.47 Aligned_cols=84 Identities=36% Similarity=0.688 Sum_probs=83.1
Q ss_pred CCeEeEEeecCCCCCCCCCceeE-------------------------------Eeecceeeeeeeeeeccccccccccc
Q 041379 1 PLRRPIVKSFDDRTRERPNGHCL-------------------------------LVSYQHLMPTRYTLDVDLKVVVTADS 49 (85)
Q Consensus 1 ~~KAVIvk~~ddgt~~rpy~hal-------------------------------vvNynHlmPTRY~vdi~lk~~v~~d~ 49 (85)
|+||||||++||||+|||||||| +|||||||||||+||++ +++|++|+
T Consensus 20 GkKaVivk~~ddgt~drpy~halVaGIdryP~kVtk~M~kkki~KRskiK~FvK~vNynHlmPTRY~vdi~-~~~v~~~~ 98 (134)
T PTZ00471 20 GRKAVIVQNFDTASKERPYGHALVAGIKKYPKKVVRGMSKRTIARRSQVGVFLRVVNHKHFLPTRYNMDMS-KELRGRIN 98 (134)
T ss_pred CcEEEEEeecCCCCccCcCceEEEEeecccchhhhhhccHHHHHHHhccccceEEEeeceecccceeeecc-ccccCHHH
Confidence 89999999999999999999999 89999999999999999 89999999
Q ss_pred ccChHHHHHHHHHHHHHHHHHhcCCCceEeeeecCC
Q 041379 50 LQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85 (85)
Q Consensus 50 ~~d~~~k~~a~ke~k~~feeryk~gknkwfF~KLrF 85 (85)
|+||++|++|+++++..|||+|++|||+|||+||||
T Consensus 99 ~~d~~~k~~ar~~~k~~feer~k~gKn~wFF~kLrF 134 (134)
T PTZ00471 99 VSDASKKARSKQLVKKLFQARYNAGSSRWFFQRLRF 134 (134)
T ss_pred hhChHHHHHHHHHHHHHHHHHHhcCccceeeeeccC
Confidence 999999999999999999999999999999999998
No 2
>KOG3418 consensus 60S ribosomal protein L27 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.2e-44 Score=246.61 Aligned_cols=85 Identities=54% Similarity=0.887 Sum_probs=83.9
Q ss_pred CCeEeEEeecCCCCCCCCCceeE-------------------------------Eeecceeeeeeeeeecc-cccccccc
Q 041379 1 PLRRPIVKSFDDRTRERPNGHCL-------------------------------LVSYQHLMPTRYTLDVD-LKVVVTAD 48 (85)
Q Consensus 1 ~~KAVIvk~~ddgt~~rpy~hal-------------------------------vvNynHlmPTRY~vdi~-lk~~v~~d 48 (85)
||||||||++||||+|+|||||| +|||||||||||+||++ +++++++|
T Consensus 20 g~KaVivk~~Ddg~~d~p~~h~LvAgi~ryP~kvt~~~gkkk~~krsk~k~flKv~ny~hlMptRy~vdv~~~k~v~~kd 99 (136)
T KOG3418|consen 20 GKKAVIVKNIDDGTEDKPYGHALVAGVDRYPRKVTKSMGKKKLAKRSKVKPFLKVINYNHLMPTRYTVDVLALKTVINKD 99 (136)
T ss_pred CccEEEEeecccCCccCCCceeeeeehhhccccccccccchhhhhcccceeEEEEeecccccCcceEEeehhhhccccHH
Confidence 89999999999999999999999 99999999999999999 59999999
Q ss_pred cccChHHHHHHHHHHHHHHHHHhcCCCceEeeeecCC
Q 041379 49 SLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85 (85)
Q Consensus 49 ~~~d~~~k~~a~ke~k~~feeryk~gknkwfF~KLrF 85 (85)
++++|++|..|+++++..|||||++|+|+|||++|||
T Consensus 100 v~~~p~~K~~a~~~~k~kfeer~k~gkn~wff~~lrf 136 (136)
T KOG3418|consen 100 VFRDPVKKGTAIKEAKVKFEERYKTGKNKWFFTKLRF 136 (136)
T ss_pred hhhChhhhhhhhhHHHHHHHHHHHhCccccccccccC
Confidence 9999999999999999999999999999999999998
No 3
>PF01777 Ribosomal_L27e: Ribosomal L27e protein family; InterPro: IPR001141 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein, L27 is found in fungi, plants, algae and vertebrates [, ]. The family has a specific signature at the C terminus.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZS_a 4A1B_N 4A19_N 4A18_N 4A1D_N 3IZR_a.
Probab=99.98 E-value=1.4e-35 Score=192.29 Aligned_cols=62 Identities=58% Similarity=0.991 Sum_probs=53.5
Q ss_pred Eeecceeeeeeeeeec-ccccccccccccChHHHHHHHHHHHHHHHHHhcCCCceEeeeecCC
Q 041379 24 LVSYQHLMPTRYTLDV-DLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85 (85)
Q Consensus 24 vvNynHlmPTRY~vdi-~lk~~v~~d~~~d~~~k~~a~ke~k~~feeryk~gknkwfF~KLrF 85 (85)
+|||||||||||+||+ +++++|++|+++||++|++|+++++..|||+|++|||+|||+||||
T Consensus 23 ~iNynHlmPTRY~vd~~~~k~~v~~~~l~~~~~kk~a~k~~k~~feer~k~gKnkwFF~KLrF 85 (85)
T PF01777_consen 23 VINYNHLMPTRYSVDIPDDKTVVNKDALKDPSKKKKAKKEIKKKFEERYKTGKNKWFFQKLRF 85 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred EeeccceEeeeeeeechhhhcccCHHHHhChHHHHHHHHHHHHHHHHHhccCCCcEEeeeccC
Confidence 7999999999999999 4699999999999999999999999999999999999999999998
No 4
>COG2163 RPL14A Ribosomal protein L14E/L6E/L27E [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=7.8e-09 Score=71.34 Aligned_cols=74 Identities=23% Similarity=0.180 Sum_probs=54.8
Q ss_pred CCeEeEEeecCCCCCCCCCceeE-------Eeecceeeeeeeeeecc------------------------ccccccccc
Q 041379 1 PLRRPIVKSFDDRTRERPNGHCL-------LVSYQHLMPTRYTLDVD------------------------LKVVVTADS 49 (85)
Q Consensus 1 ~~KAVIvk~~ddgt~~rpy~hal-------vvNynHlmPTRY~vdi~------------------------lk~~v~~d~ 49 (85)
|+++|||+.+||+ .-.+.||++ .+|++|++||--.++++ - +.+..+.
T Consensus 20 Gkk~VIv~~iDd~-~v~i~gp~~v~gv~r~r~n~~~l~~t~~~~~~~rg~~~~~v~~~~~a~~~~~~~~~~~-~~~~~k~ 97 (125)
T COG2163 20 GKKVVIVKIIDDN-FVLITGPKKVKGVPRRRINIKHLEPTDKVIDLVRGASDEKVKKANEAAGVLAKLDKSA-KNLETKK 97 (125)
T ss_pred CceEEEEEEccCC-EEEEeCCccccCCccccccceeeeccceeeeecccccHHHHHHHHHhhhhhccccccc-hhhhhhh
Confidence 8999999999998 667777776 67777777776655442 1 1233444
Q ss_pred ccChHHHHHHHHHHHHHHHHHhcCCCc
Q 041379 50 LQSKDKKMIACKETKKRLEERFKTSKN 76 (85)
Q Consensus 50 ~~d~~~k~~a~ke~k~~feeryk~gkn 76 (85)
++.+..+-+..+..+..++|+|..|++
T Consensus 98 ~~~~~~~~~r~~~~k~~~~~~~~~~k~ 124 (125)
T COG2163 98 VREPLTDAERFKVMKLVKEERLQVGKA 124 (125)
T ss_pred hhcccchHHHHHHHHHHHHHHhhhhcc
Confidence 566677777777889999999999886
No 5
>PRK04333 50S ribosomal protein L14e; Validated
Probab=96.82 E-value=0.002 Score=41.65 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=29.7
Q ss_pred CCeEeEEeecCCCCCCCCCceeE------------Eeecceeeeeeeeeecc
Q 041379 1 PLRRPIVKSFDDRTRERPNGHCL------------LVSYQHLMPTRYTLDVD 40 (85)
Q Consensus 1 ~~KAVIvk~~ddgt~~rpy~hal------------vvNynHlmPTRY~vdi~ 40 (85)
|+.||||+.+|+ +++| .+|.+||.+|-..++++
T Consensus 19 gk~~vIv~i~d~-------~~vlVdg~~~~~~~rk~kn~khl~lt~~ki~~~ 63 (84)
T PRK04333 19 GRKCVIVDIIDK-------NFVLVTGPSLTGVKRRRCNIKHLEPTDKKVDIE 63 (84)
T ss_pred CCEEEEEEEecC-------CEEEEECCCcCCCCCeeechHHEEEeeEEEECC
Confidence 789999999999 7888 99999999999888764
No 6
>PTZ00065 60S ribosomal protein L14; Provisional
Probab=95.80 E-value=0.016 Score=40.45 Aligned_cols=34 Identities=15% Similarity=0.070 Sum_probs=30.1
Q ss_pred CCeEeEEeecCCCCCCCCCceeE------------Eeecceeeeeeeeeeccc
Q 041379 1 PLRRPIVKSFDDRTRERPNGHCL------------LVSYQHLMPTRYTLDVDL 41 (85)
Q Consensus 1 ~~KAVIvk~~ddgt~~rpy~hal------------vvNynHlmPTRY~vdi~l 41 (85)
|+-||||-.+|. ..|| +||++||.||-+.++|+-
T Consensus 23 GKL~vIVDIID~-------nRvLVDGP~~tgV~Rq~i~~k~l~LT~~~v~i~r 68 (130)
T PTZ00065 23 GKLCFIVDIVTP-------TRVLVDGAFITGVKRQSIPLKRLKLTDEKIKINR 68 (130)
T ss_pred CCEEEEEEEEcC-------CeEEEeCCCcCCcceeEEeccceEEccEEEecCC
Confidence 788999999997 5555 899999999999999974
No 7
>PF01929 Ribosomal_L14e: Ribosomal protein L14; InterPro: IPR002784 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry includes the eukaryotic ribosomal protein L14, which binds to the 60S ribosomal subunit, and archaebacterial ribosomal protein L14E, which binds to the 50S ribosomal subunit.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZS_N 3O5H_N 3O58_N 2KDS_A 2JOY_A 4A1B_F 4A19_F 4A18_F 4A1D_F 3IZR_N.
Probab=73.26 E-value=2.3 Score=27.03 Aligned_cols=18 Identities=11% Similarity=0.355 Sum_probs=16.5
Q ss_pred Eeecceeeeeeeeeeccc
Q 041379 24 LVSYQHLMPTRYTLDVDL 41 (85)
Q Consensus 24 vvNynHlmPTRY~vdi~l 41 (85)
+||++||.+|-|.++|+-
T Consensus 4 ~i~~k~l~LT~~~i~i~r 21 (77)
T PF01929_consen 4 VINLKRLHLTDFVIKIPR 21 (77)
T ss_dssp EEECTSSEEEEEETTTTT
T ss_pred eeeccceEeecEEEeccC
Confidence 689999999999999884
No 8
>PRK14014 putative acyltransferase; Provisional
Probab=56.58 E-value=31 Score=26.33 Aligned_cols=29 Identities=10% Similarity=0.039 Sum_probs=18.4
Q ss_pred cccccccccccChHHHHHHHHHHHHHHHH
Q 041379 41 LKVVVTADSLQSKDKKMIACKETKKRLEE 69 (85)
Q Consensus 41 lk~~v~~d~~~d~~~k~~a~ke~k~~fee 69 (85)
++++...|-..|++-|.+..+=+...++|
T Consensus 257 i~~~~~~~y~~d~~~~~~~~~Wl~~~w~~ 285 (301)
T PRK14014 257 IPEELIGDYFNDKEFRRRFQQWLNQLWQE 285 (301)
T ss_pred cccccccccccChHHHHHHHHHHHHHHHH
Confidence 35555556677888787777666555554
No 9
>PF02491 SHS2_FTSA: SHS2 domain inserted in FTSA; InterPro: IPR003494 FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains [].; GO: 0007049 cell cycle; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=43.75 E-value=15 Score=22.32 Aligned_cols=12 Identities=42% Similarity=0.805 Sum_probs=10.2
Q ss_pred ceeeeeeeeeec
Q 041379 28 QHLMPTRYTLDV 39 (85)
Q Consensus 28 nHlmPTRY~vdi 39 (85)
=|++|.+|.||=
T Consensus 45 ih~ip~~y~lD~ 56 (80)
T PF02491_consen 45 IHVIPQEYILDG 56 (80)
T ss_dssp EEEEEEEEEETT
T ss_pred EEEEeEEEEECC
Confidence 389999999964
No 10
>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis []. FliL is a cytoplasmic membrane protein associated with the basal body [].; GO: 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009425 bacterial-type flagellum basal body
Probab=28.90 E-value=79 Score=19.31 Aligned_cols=30 Identities=27% Similarity=0.299 Sum_probs=23.9
Q ss_pred ccccccChHHHHHHHHHHHHHHHHHhcCCC
Q 041379 46 TADSLQSKDKKMIACKETKKRLEERFKTSK 75 (85)
Q Consensus 46 ~~d~~~d~~~k~~a~ke~k~~feeryk~gk 75 (85)
+.+.+.++..+...+.+++..+.+.+..|+
T Consensus 58 ~~~~l~~~~g~~~Lk~~l~~~in~~l~~~~ 87 (99)
T PF03748_consen 58 TAEDLSGPEGKERLKDELKDRINKILGKGK 87 (99)
T ss_pred CHHHhcChhhHHHHHHHHHHHHHHhhccCc
Confidence 345677888899999999999988887766
No 11
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=26.61 E-value=1.3e+02 Score=24.86 Aligned_cols=17 Identities=24% Similarity=0.475 Sum_probs=13.3
Q ss_pred EeecCCCCCCCCCceeE
Q 041379 7 VKSFDDRTRERPNGHCL 23 (85)
Q Consensus 7 vk~~ddgt~~rpy~hal 23 (85)
|--|..-|.|+|||-+.
T Consensus 260 VslInaPtadkPygk~y 276 (444)
T COG3579 260 VSLINAPTADKPYGKSY 276 (444)
T ss_pred eeeccCCcCCCCCccee
Confidence 34467789999999886
No 12
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=26.32 E-value=38 Score=21.09 Aligned_cols=6 Identities=33% Similarity=0.706 Sum_probs=2.3
Q ss_pred eeeecc
Q 041379 35 YTLDVD 40 (85)
Q Consensus 35 Y~vdi~ 40 (85)
+++.+|
T Consensus 90 ~s~i~d 95 (100)
T cd02860 90 RSVDLD 95 (100)
T ss_pred ceEECC
Confidence 333333
No 13
>PF13862 BCIP: p21-C-terminal region-binding protein
Probab=23.84 E-value=81 Score=22.69 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=20.2
Q ss_pred eEEeecCCCCCCCCCceeEEeecceee
Q 041379 5 PIVKSFDDRTRERPNGHCLLVSYQHLM 31 (85)
Q Consensus 5 VIvk~~ddgt~~rpy~halvvNynHlm 31 (85)
-+||.- ||..+-|||-+-++|+++-.
T Consensus 50 svVK~~-d~~e~dvyg~~Svlnl~~~k 75 (194)
T PF13862_consen 50 SVVKQA-DGDEDDVYGFLSVLNLTQHK 75 (194)
T ss_pred eEEEec-CCCCCcceEEEEEEEccccc
Confidence 477776 55678899999999997653
No 14
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=23.63 E-value=1.1e+02 Score=20.82 Aligned_cols=29 Identities=14% Similarity=0.242 Sum_probs=23.3
Q ss_pred cccccChHHHHHHHHHHHHHHHHHhcCCC
Q 041379 47 ADSLQSKDKKMIACKETKKRLEERFKTSK 75 (85)
Q Consensus 47 ~d~~~d~~~k~~a~ke~k~~feeryk~gk 75 (85)
.+.+.+++.+.+.+.+++..+..-..+|+
T Consensus 102 ~~~l~~~~G~~~Lr~el~~~in~~l~~g~ 130 (142)
T PRK07718 102 AEDFKGKKGLEALKEQLKEKINNLMQEGK 130 (142)
T ss_pred HHHhcChhHHHHHHHHHHHHHHHhhccCc
Confidence 34577888899999999888887777776
No 15
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=23.22 E-value=96 Score=22.00 Aligned_cols=28 Identities=25% Similarity=0.261 Sum_probs=24.1
Q ss_pred cccccChHHHHHHHHHHHHHHHHHhcCC
Q 041379 47 ADSLQSKDKKMIACKETKKRLEERFKTS 74 (85)
Q Consensus 47 ~d~~~d~~~k~~a~ke~k~~feeryk~g 74 (85)
.+.++.+..|.+.++|++..+..-...|
T Consensus 118 ~~eL~t~~Gke~Lk~ei~~~in~~L~~g 145 (159)
T COG1580 118 AAELSTPEGKEKLKAEIKDRINTILKEG 145 (159)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHHHhcC
Confidence 4457788889999999999999999888
No 16
>PF11061 DUF2862: Protein of unknown function (DUF2862); InterPro: IPR021291 This family of proteins has no known function.
Probab=22.99 E-value=40 Score=20.85 Aligned_cols=11 Identities=27% Similarity=0.903 Sum_probs=8.4
Q ss_pred cCCCceEeeee
Q 041379 72 KTSKNRWFFTK 82 (85)
Q Consensus 72 k~gknkwfF~K 82 (85)
..|...|||..
T Consensus 50 ~ng~~~WFFed 60 (64)
T PF11061_consen 50 SNGSRTWFFED 60 (64)
T ss_pred cCCceeEEchh
Confidence 36889999963
No 17
>PF12563 Hemolysin_N: Hemolytic toxin N terminal; InterPro: IPR022220 This domain family is found in bacteria, and is approximately 190 amino acids in length. The family is found in association with PF07968 from PFAM, PF00652 from PFAM. This family is a bacterial virulence factor - hemolysin - which forms pores in erythrocytes and causes them to lyse. ; PDB: 1XEZ_A 3O44_I.
Probab=22.45 E-value=1.4e+02 Score=22.18 Aligned_cols=19 Identities=11% Similarity=0.480 Sum_probs=10.1
Q ss_pred cccChHHHHHHHHHHHHHHHHHh
Q 041379 49 SLQSKDKKMIACKETKKRLEERF 71 (85)
Q Consensus 49 ~~~d~~~k~~a~ke~k~~feery 71 (85)
.+.|.++|.+| +++|+..+
T Consensus 85 ~iede~~k~~a----q~~~r~~~ 103 (187)
T PF12563_consen 85 QIEDEEEKAQA----QAKFRKQY 103 (187)
T ss_dssp T--SHHHHHHH----HHHHHHHH
T ss_pred ccCChHHHHHH----HHHHHHHh
Confidence 35566777665 45555555
No 18
>PF11982 DUF3483: Domain of unknown function (DUF3483); InterPro: IPR021872 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 230 amino acids in length. This domain is found associated with PF02754 from PFAM.
Probab=22.24 E-value=29 Score=26.34 Aligned_cols=10 Identities=50% Similarity=1.062 Sum_probs=8.6
Q ss_pred eeeeeeeecc
Q 041379 31 MPTRYTLDVD 40 (85)
Q Consensus 31 mPTRY~vdi~ 40 (85)
||-||-||+-
T Consensus 45 ~PkRYlVDlH 54 (224)
T PF11982_consen 45 MPKRYLVDLH 54 (224)
T ss_pred CChhheeech
Confidence 8999999874
No 19
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=21.94 E-value=1.7e+02 Score=20.16 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=22.3
Q ss_pred cccccChHHHHHHHHHHHHHHHHHhcCC
Q 041379 47 ADSLQSKDKKMIACKETKKRLEERFKTS 74 (85)
Q Consensus 47 ~d~~~d~~~k~~a~ke~k~~feeryk~g 74 (85)
.+.+.+++.+.+++.++...+.+.+..|
T Consensus 118 ~~~L~~~eGk~~Lk~ei~~~in~~l~~~ 145 (162)
T PRK07021 118 AAELATEEGKQKLAAEIKQTLSQPLVPG 145 (162)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHhcc
Confidence 3457788889999999988888887655
No 20
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=20.03 E-value=43 Score=27.47 Aligned_cols=12 Identities=42% Similarity=0.791 Sum_probs=9.8
Q ss_pred eeeeeeeecccc
Q 041379 31 MPTRYTLDVDLK 42 (85)
Q Consensus 31 mPTRY~vdi~lk 42 (85)
|.|||.|+--||
T Consensus 1 MtsRYRVEyaLK 12 (408)
T PF06437_consen 1 MTSRYRVEYALK 12 (408)
T ss_pred CCcceeeeeecc
Confidence 899999987554
Done!