Query 041379
Match_columns 85
No_of_seqs 105 out of 207
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 10:44:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041379.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041379hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_a 60S ribosomal protein L 100.0 1.5E-49 5.2E-54 275.0 -4.8 85 1-85 20-136 (136)
2 3izc_a 60S ribosomal protein R 100.0 4E-49 1.4E-53 272.9 -4.7 85 1-85 20-136 (136)
3 4a18_N RPL27, ribosomal protei 100.0 1.5E-43 5.2E-48 247.0 3.3 84 1-85 20-144 (144)
4 3iz5_N 60S ribosomal protein L 99.1 8.7E-11 3E-15 80.8 4.3 34 1-41 22-64 (134)
5 4a18_E RPL6; ribosome, eukaryo 98.9 9.4E-10 3.2E-14 79.4 5.1 44 1-51 60-118 (191)
6 2joy_A 50S ribosomal protein L 98.9 1.5E-09 5.1E-14 70.4 4.2 33 1-40 19-64 (96)
7 3izc_N 60S ribosomal protein R 98.7 2.1E-08 7.3E-13 69.2 4.5 34 1-41 30-74 (138)
8 4a18_F RPL14; ribosome, eukary 98.4 1.4E-07 4.7E-12 64.3 4.0 34 1-41 22-65 (126)
9 3j21_5 50S ribosomal protein L 97.8 2.2E-05 7.5E-10 49.7 4.1 33 1-40 19-63 (83)
10 3iz5_G 60S ribosomal protein L 93.7 0.16 5.5E-06 37.1 6.0 40 1-40 90-135 (219)
11 3izc_G 60S ribosomal protein R 90.5 0.71 2.4E-05 32.7 6.0 40 1-40 49-94 (176)
12 3s6e_A RNA-binding protein 39; 30.8 28 0.00097 21.7 2.1 38 31-72 5-42 (114)
13 3i24_A HIT family hydrolase; s 27.3 56 0.0019 21.4 3.2 40 29-69 93-135 (149)
14 3ohe_A Histidine triad (HIT) p 26.4 87 0.003 20.0 4.0 40 29-69 93-135 (137)
15 3o0m_A HIT family protein; ssg 24.6 73 0.0025 20.3 3.3 9 29-38 105-113 (149)
16 3v4m_A Splicing factor U2AF 65 24.5 91 0.0031 18.7 3.6 34 32-68 4-37 (105)
17 2eo4_A 150AA long hypothetical 22.4 1.5E+02 0.0051 18.6 4.5 41 28-70 97-139 (149)
18 2kuy_A Prebacteriocin glycocin 20.2 3.8 0.00013 22.5 -3.1 15 9-23 15-29 (43)
No 1
>3iz5_a 60S ribosomal protein L27 (L27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_a
Probab=100.00 E-value=1.5e-49 Score=275.01 Aligned_cols=85 Identities=65% Similarity=1.112 Sum_probs=47.1
Q ss_pred CCeEeEEeecCCCCCCCCCceeE-------------------------------Eeecceeeeeeeeeeccccccc-ccc
Q 041379 1 PLRRPIVKSFDDRTRERPNGHCL-------------------------------LVSYQHLMPTRYTLDVDLKVVV-TAD 48 (85)
Q Consensus 1 ~~KAVIvk~~ddgt~~rpy~hal-------------------------------vvNynHlmPTRY~vdi~lk~~v-~~d 48 (85)
|+||||||++||||+|||||||| +|||||||||||+||+|||++| ++|
T Consensus 20 GkKaVivk~~d~gt~drpy~halVaGIdryP~kvt~~M~kkki~KrskiK~FvKv~NynHlmPTRY~vdi~lK~~v~~~d 99 (136)
T 3iz5_a 20 GRKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKCFLKLVNFTHLMPTRYTLDVDLKEVAAGPD 99 (136)
T ss_dssp CCCCBCSCCSSSSSCSCSSCCSCCBCCSTTTTCCCCCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CcEEEEEEecCCCCCCCccceEEEEeeccCChhhccCCCHHHhhhhhhceeeeEEEeecceeccceEeecchhheecCHH
Confidence 89999999999999999999999 8999999999999999999998 999
Q ss_pred cccChHHHHHHHHHHHHHHHHHhcCCCceEeeeecCC
Q 041379 49 SLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85 (85)
Q Consensus 49 ~~~d~~~k~~a~ke~k~~feeryk~gknkwfF~KLrF 85 (85)
+|+||++|++|++|++..|||||++|||+||||||||
T Consensus 100 ~~~dp~~k~~a~~~~k~~feeryk~gKnkwfF~kLrF 136 (136)
T 3iz5_a 100 ALATRDKKVAACKSAKARLEDRFKTGKNRWFFTKLRF 136 (136)
T ss_dssp -------------------------------------
T ss_pred HhcChhHhHHHHHHHHHHHHHHHhcCCCceeeeecCC
Confidence 9999999999999999999999999999999999998
No 2
>3izc_a 60S ribosomal protein RPL27 (L27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_a 3u5e_Z 3u5i_Z 4b6a_Z
Probab=100.00 E-value=4e-49 Score=272.94 Aligned_cols=85 Identities=46% Similarity=0.799 Sum_probs=46.8
Q ss_pred CCeEeEEeecCCCCCCCCCceeE-------------------------------Eeecceeeeeeeeeeccc-ccccccc
Q 041379 1 PLRRPIVKSFDDRTRERPNGHCL-------------------------------LVSYQHLMPTRYTLDVDL-KVVVTAD 48 (85)
Q Consensus 1 ~~KAVIvk~~ddgt~~rpy~hal-------------------------------vvNynHlmPTRY~vdi~l-k~~v~~d 48 (85)
|+||||||++||||+|||||||| +|||||||||||+||||+ |++|++|
T Consensus 20 GkKaVivk~~d~gt~d~py~halVaGIdryP~kvt~~Mgkkki~KrskiK~FvKv~NynHlmPTRy~vdi~~~K~~v~~d 99 (136)
T 3izc_a 20 GKKVVIVKPHDEGSKSHPFGHALVAGIERYPLKVTKKHGAKKVAKRTKIKPFIKVVNYNHLLPTRYTLDVEAFKSVVSTE 99 (136)
T ss_dssp CCBCBCCCCSSSCSCCSSSCCSCCBCCSSSSCCCCCCSSSCCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CcEEEEEEecCCCCCCCccceEEEEecccCChhhhhccCHHHHHhhhhceeeeEEEeccceeeeeeeEcccccccccCHH
Confidence 89999999999999999999999 899999999999999995 9999999
Q ss_pred cccChHHHHHHHHHHHHHHHHHhcCCCceEeeeecCC
Q 041379 49 SLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85 (85)
Q Consensus 49 ~~~d~~~k~~a~ke~k~~feeryk~gknkwfF~KLrF 85 (85)
+|+||++|++|++|++..|||||++|||+||||||||
T Consensus 100 ~~~dp~~k~~a~~~~k~~feeryk~gKnkwfF~kLrF 136 (136)
T 3izc_a 100 TFEQPSQREEAKKVVKKAFEERHQAGKNQWFFSKLRF 136 (136)
T ss_dssp -------------------------------------
T ss_pred HhcChhHhHHHHHHHHHHHHHHHhcCCccEeeeecCC
Confidence 9999999999999999999999999999999999998
No 3
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N
Probab=100.00 E-value=1.5e-43 Score=246.97 Aligned_cols=84 Identities=38% Similarity=0.636 Sum_probs=82.7
Q ss_pred CCeEeEEeecCCCCCCCCCceeE-------------------------------Eeecceeeeeeeee--eccccccccc
Q 041379 1 PLRRPIVKSFDDRTRERPNGHCL-------------------------------LVSYQHLMPTRYTL--DVDLKVVVTA 47 (85)
Q Consensus 1 ~~KAVIvk~~ddgt~~rpy~hal-------------------------------vvNynHlmPTRY~v--di~lk~~v~~ 47 (85)
|+|||||+++||||+||||+||| +|||||||||||+| |||||++|++
T Consensus 20 GkkaVIvk~iD~gt~d~~y~~aLVaGIdryP~kvt~~m~kkki~kRskiK~FvK~vN~~Hl~pTry~v~~di~lK~~v~~ 99 (144)
T 4a18_N 20 GKKAVIVKSSEDGTKDRKFGHVLVAGVERSPKKVTKRMGSKKIQKRTSVKPFIKYVNLNHIMPTRYSVKELCDFKELVKE 99 (144)
T ss_dssp TCEEEEEEEESSCCSSCCSCEEEEEEEEECCCCCCSSCCHHHHHHTTCCEEEEEEEEGGGEEEEEEECSTTCCHHHHSCH
T ss_pred CCEEEEEEecCCCccCCccceEEEEecccCCchhccccchheeccccccceeEEEEeeeeEEEeeEEeeccCchhhccCH
Confidence 89999999999999999999999 69999999999999 9999999999
Q ss_pred ccccChHHHHHHHHHHHHHHHHHh--------cCCCceEeeeecCC
Q 041379 48 DSLQSKDKKMIACKETKKRLEERF--------KTSKNRWFFTKLRF 85 (85)
Q Consensus 48 d~~~d~~~k~~a~ke~k~~feery--------k~gknkwfF~KLrF 85 (85)
|+|+| ++|++|+++++..||||| ++|+|+|||+||||
T Consensus 100 d~~~~-~~k~~a~~~~k~~feery~~~~~~~kk~gknkwfF~kLrF 144 (144)
T 4a18_N 100 DKIKN-NAKSEVRDTLKKVFVEKYRTINPEEKSASHTKFFFSKLRF 144 (144)
T ss_dssp HHHHT-TCHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHCCCCC
T ss_pred HHhhh-hHhHHHHHHHHHHHHHHhhhccccccccCCceEeeeecCC
Confidence 99999 999999999999999999 99999999999998
No 4
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=99.08 E-value=8.7e-11 Score=80.82 Aligned_cols=34 Identities=21% Similarity=0.283 Sum_probs=31.8
Q ss_pred CCeEeEEeecCCCCCCCCCceeE---------Eeecceeeeeeeeeeccc
Q 041379 1 PLRRPIVKSFDDRTRERPNGHCL---------LVSYQHLMPTRYTLDVDL 41 (85)
Q Consensus 1 ~~KAVIvk~~ddgt~~rpy~hal---------vvNynHlmPTRY~vdi~l 41 (85)
|++||||+.+|+ +||| ++||+|||||+|++||+.
T Consensus 22 Gk~avIV~iiD~-------~rvLVdG~~v~Rk~~n~khL~lT~~~v~i~r 64 (134)
T 3iz5_N 22 GRLVVIVDVVDQ-------NRALVDAPDMVRCQINFKRLSLTDIKIDIKR 64 (134)
T ss_dssp CCEEEEEEECSS-------SEEEEEETTEEEEEEECTTSEEEEEECCCCS
T ss_pred CCEEEEEEEcCC-------CeEEEeCCCccceeechhHeEEeCEEEeccC
Confidence 889999999999 5999 799999999999999984
No 5
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_E 4a1b_E 4a1d_E
Probab=98.93 E-value=9.4e-10 Score=79.45 Aligned_cols=44 Identities=18% Similarity=0.205 Sum_probs=35.7
Q ss_pred CCeEeEEeecCCCCCCCCCceeE-------------Eeecceeeeeeeeeecc-cc-ccccccccc
Q 041379 1 PLRRPIVKSFDDRTRERPNGHCL-------------LVSYQHLMPTRYTLDVD-LK-VVVTADSLQ 51 (85)
Q Consensus 1 ~~KAVIvk~~ddgt~~rpy~hal-------------vvNynHlmPTRY~vdi~-lk-~~v~~d~~~ 51 (85)
|+|||+||++|+ ||+| .+|++|+|||||.|||+ ++ ..+|.+-|+
T Consensus 60 GKrvV~LKql~s-------gllLVtGP~~vn~vplrrvn~~~vi~TstkvDis~vki~~~~d~YF~ 118 (191)
T 4a18_E 60 GKRVVFLKQLKS-------GLLLVTGPYKVNGVPLKRVNQAYTLSTSTKVDLTGVNTAKFEDDYFG 118 (191)
T ss_dssp TBEEEEEEECTT-------SCEEEECCTTTSSCCSEEECGGGEEEEEEECCCTTCCGGGCCGGGSC
T ss_pred CCEEEEEEecCC-------CeEEEecCccccCCceEEEeeeeEEeeeeEeecccccccccCHHHhc
Confidence 899999999998 7888 89999999999999987 43 225544443
No 6
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=98.88 E-value=1.5e-09 Score=70.43 Aligned_cols=33 Identities=33% Similarity=0.434 Sum_probs=30.5
Q ss_pred CCeEeEEeecCCCCCCCCCceeE-------------Eeecceeeeeeeeeecc
Q 041379 1 PLRRPIVKSFDDRTRERPNGHCL-------------LVSYQHLMPTRYTLDVD 40 (85)
Q Consensus 1 ~~KAVIvk~~ddgt~~rpy~hal-------------vvNynHlmPTRY~vdi~ 40 (85)
|++||||+.+|+ +|+| .+|++|||||+|.+|++
T Consensus 19 Gk~~VIv~~iD~-------~~vLV~gp~~~~~~~rk~~n~khl~~T~~~vdi~ 64 (96)
T 2joy_A 19 GSKCVIVDIIDD-------NFVLVTGPKDITGVKRRRVNILHLEPTDKKIDIQ 64 (96)
T ss_dssp CCEEEEEEECSS-------SCEEEECCTTTTCCCCEEESCSSCEEEEEECCCC
T ss_pred CCEEEEEEEeCC-------CEEEEECCcccCCcCCEEEchHHEEEeeEEEeCC
Confidence 899999999999 5888 89999999999999965
No 7
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=98.66 E-value=2.1e-08 Score=69.21 Aligned_cols=34 Identities=18% Similarity=0.193 Sum_probs=31.7
Q ss_pred CCeEeEEeecCCCCCCCCCceeE-----------Eeecceeeeeeeeeeccc
Q 041379 1 PLRRPIVKSFDDRTRERPNGHCL-----------LVSYQHLMPTRYTLDVDL 41 (85)
Q Consensus 1 ~~KAVIvk~~ddgt~~rpy~hal-----------vvNynHlmPTRY~vdi~l 41 (85)
|++||||+.+|+ ++|| .+|++||+||+|.++|+.
T Consensus 30 Gk~avIV~iiD~-------~rVLVDGp~~gV~R~~~n~khL~lT~~~v~i~r 74 (138)
T 3izc_N 30 GKLAAIVEIIDQ-------KKVLIDGPKAGVPRQAINLGQVVLTPLTFALPR 74 (138)
T ss_dssp CCEEEEEEECSS-------SEEEEECSSSSCCCEEEECSSSEEEEEECCCCS
T ss_pred CCEEEEEEEecC-------CEEEEEcCCCCcccceechhHeEEecEEEEccC
Confidence 889999999999 6888 799999999999999984
No 8
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=98.45 E-value=1.4e-07 Score=64.33 Aligned_cols=34 Identities=21% Similarity=0.383 Sum_probs=31.7
Q ss_pred CCeEeEEeecCCCCCCCCCceeE---------Eeecceeeeeeeeee-ccc
Q 041379 1 PLRRPIVKSFDDRTRERPNGHCL---------LVSYQHLMPTRYTLD-VDL 41 (85)
Q Consensus 1 ~~KAVIvk~~ddgt~~rpy~hal---------vvNynHlmPTRY~vd-i~l 41 (85)
|++||||..+|+ +||| ++|++||+||.|.++ |+-
T Consensus 22 GklavIVdIID~-------nrvLVdGp~V~Rq~~n~k~l~LT~~~v~~i~r 65 (126)
T 4a18_F 22 GKLAVIVNIINQ-------NRILIDGEHIVRQVIPIRRVHLTKFQIDNVEL 65 (126)
T ss_dssp TEEEEEEEEETT-------TEEEEEETTEEEEEEEGGGEEEEEEECTTCCT
T ss_pred CCEEEEEEEecC-------CeEEEeCCCcccceeeccceEEcceeccccCC
Confidence 789999999999 6999 899999999999998 874
No 9
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=97.80 E-value=2.2e-05 Score=49.68 Aligned_cols=33 Identities=18% Similarity=0.335 Sum_probs=30.1
Q ss_pred CCeEeEEeecCCCCCCCCCceeE------------Eeecceeeeeeeeeecc
Q 041379 1 PLRRPIVKSFDDRTRERPNGHCL------------LVSYQHLMPTRYTLDVD 40 (85)
Q Consensus 1 ~~KAVIvk~~ddgt~~rpy~hal------------vvNynHlmPTRY~vdi~ 40 (85)
|++||||+++|+ +||| .+|..||-||-+.++++
T Consensus 19 Gk~~vIv~iiD~-------~~vlV~g~~~~~v~rk~kn~khl~lt~~~i~~~ 63 (83)
T 3j21_5 19 GQKVVVVDIIDK-------NFVLVTGAGLNKVKRRRMNIKHIEPLPQKIDIP 63 (83)
T ss_dssp CCCEEEEEECSS-------SCEEEECCTTTTCCCEEESCSSCEEEEEECCCC
T ss_pred CCEEEEEEEcCC-------CEEEEECCccCccCCeEechHHEEEeeEEEECC
Confidence 789999999999 6888 79999999999998765
No 10
>3iz5_G 60S ribosomal protein L6 (L6E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_G
Probab=93.65 E-value=0.16 Score=37.14 Aligned_cols=40 Identities=15% Similarity=0.157 Sum_probs=31.0
Q ss_pred CCeEeEEeecCCCC--CCCCCc-eeE---Eeecceeeeeeeeeecc
Q 041379 1 PLRRPIVKSFDDRT--RERPNG-HCL---LVSYQHLMPTRYTLDVD 40 (85)
Q Consensus 1 ~~KAVIvk~~ddgt--~~rpy~-hal---vvNynHlmPTRY~vdi~ 40 (85)
|+++|++|.+|+|- -.-|+. ..+ -+|.+|+++|--.|||+
T Consensus 90 GKrvVfLkqL~sgllLVtGP~~lNgVplrR~~qk~viaTstkIdIs 135 (219)
T 3iz5_G 90 GKRVVFLKQLQSGLLLITGPFKINGVPIRRVNQAYVIATSTKVDIS 135 (219)
T ss_dssp CCEECEEEESSSSSEEECCCCSSSCCCCEEESSSSCEECSCCCSCS
T ss_pred CcEEEEEEecCCCeEEEcCCccccCCccEEechhhEEecceEeecC
Confidence 88999999999975 233432 111 89999999999999886
No 11
>3izc_G 60S ribosomal protein RPL6 (L6E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_G 3o58_F 3o5h_F 3u5e_E 3u5i_E 4b6a_E
Probab=90.48 E-value=0.71 Score=32.70 Aligned_cols=40 Identities=23% Similarity=0.240 Sum_probs=29.6
Q ss_pred CCeEeEEeecCCCCC--CCCCce--e-E-Eeecceeeeeeeeeecc
Q 041379 1 PLRRPIVKSFDDRTR--ERPNGH--C-L-LVSYQHLMPTRYTLDVD 40 (85)
Q Consensus 1 ~~KAVIvk~~ddgt~--~rpy~h--a-l-vvNynHlmPTRY~vdi~ 40 (85)
|+++|++|..|+|.- --|+.- + | -+|-+|+++|--.|||.
T Consensus 49 GkrvVfLKql~sglllVTGP~~lNgvplrR~~q~~vIaTstkidis 94 (176)
T 3izc_G 49 GKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVE 94 (176)
T ss_dssp CCCBEEEEESSSSSEEEECCCSSSCCCCEEESSSSCEECSCCCSSS
T ss_pred CCEEEEEEecCCCeEEEecCceecCCcceeeecceEEeeeeeeecc
Confidence 889999999999641 112210 0 0 78999999999999876
No 12
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=30.78 E-value=28 Score=21.69 Aligned_cols=38 Identities=5% Similarity=0.010 Sum_probs=27.5
Q ss_pred eeeeeeeecccccccccccccChHHHHHHHHHHHHHHHHHhc
Q 041379 31 MPTRYTLDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFK 72 (85)
Q Consensus 31 mPTRY~vdi~lk~~v~~d~~~d~~~k~~a~ke~k~~feeryk 72 (85)
+|||..+ |+.+++.+.+.|+..-.+...+++..|+ +|.
T Consensus 5 ~ps~vv~---L~Nm~~~~e~~d~~~~~el~edl~~~f~-kfG 42 (114)
T 3s6e_A 5 LATQCFQ---LSNMFNPQTEEEVGWDTEIKDDVIEECN-KHG 42 (114)
T ss_dssp CCCSEEE---EESSCCTTTCCSTTHHHHHHHHHHHHHT-TTT
T ss_pred CCCcEEE---EECCCChHHccChhHHHHHHHHHHHHHh-ccC
Confidence 5788643 4567777778888888888888888885 453
No 13
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114}
Probab=27.25 E-value=56 Score=21.40 Aligned_cols=40 Identities=18% Similarity=0.291 Sum_probs=20.6
Q ss_pred eeeeeeeeeecccc-cccc--cccccChHHHHHHHHHHHHHHHH
Q 041379 29 HLMPTRYTLDVDLK-VVVT--ADSLQSKDKKMIACKETKKRLEE 69 (85)
Q Consensus 29 HlmPTRY~vdi~lk-~~v~--~d~~~d~~~k~~a~ke~k~~fee 69 (85)
|++| ||.=|..+. .+.. ....-+++.-.+....++..+++
T Consensus 93 HvIP-R~~~D~~~~~~vw~~~~~~~~~~eel~~~a~kIr~~L~~ 135 (149)
T 3i24_A 93 HHIA-RFTTDVAWPGPVWGNTTGVIRAQSSQTQLVDLLRDKLSN 135 (149)
T ss_dssp EEEE-ECTTSTTTTSCSTTCSCCCBCCHHHHHHHHHHHHHHHTT
T ss_pred EEeC-CccCCCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 8888 787776543 2211 11122445555555556665543
No 14
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei}
Probab=26.40 E-value=87 Score=19.98 Aligned_cols=40 Identities=18% Similarity=0.147 Sum_probs=21.3
Q ss_pred eeeeeeeeeecccc-cccc--cccccChHHHHHHHHHHHHHHHH
Q 041379 29 HLMPTRYTLDVDLK-VVVT--ADSLQSKDKKMIACKETKKRLEE 69 (85)
Q Consensus 29 HlmPTRY~vdi~lk-~~v~--~d~~~d~~~k~~a~ke~k~~fee 69 (85)
|++| ||.=|..+- .+-. ...--+++.-.+...+++..+++
T Consensus 93 HviP-R~~~D~~~p~~vw~~~~~~~~~~eel~~~~~~ir~~L~~ 135 (137)
T 3ohe_A 93 HHIV-RYQGDPAWPGPVWGKQPPVPYTEEQQASVKAKLQPLLEQ 135 (137)
T ss_dssp EEEE-ECTTSTTTTSCCTTSSCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred EEeC-CCCCCCCCCcccccCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 8888 677665442 2211 11122455566666666666653
No 15
>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, hydrola structural genomics; HET: AMP; 1.90A {Mycobacterium smegmatis str}
Probab=24.63 E-value=73 Score=20.34 Aligned_cols=9 Identities=44% Similarity=0.766 Sum_probs=7.5
Q ss_pred eeeeeeeeee
Q 041379 29 HLMPTRYTLD 38 (85)
Q Consensus 29 HlmPTRY~vd 38 (85)
|++| ||.-|
T Consensus 105 HiiP-R~~~d 113 (149)
T 3o0m_A 105 HVVP-RRNGD 113 (149)
T ss_dssp EEEE-ECTTC
T ss_pred EEEC-CccCC
Confidence 8999 88766
No 16
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=24.49 E-value=91 Score=18.67 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=22.6
Q ss_pred eeeeeeecccccccccccccChHHHHHHHHHHHHHHH
Q 041379 32 PTRYTLDVDLKVVVTADSLQSKDKKMIACKETKKRLE 68 (85)
Q Consensus 32 PTRY~vdi~lk~~v~~d~~~d~~~k~~a~ke~k~~fe 68 (85)
|||..+ |..+++.+.+.|...-.+...+++..|+
T Consensus 4 ps~vl~---L~Nm~~~~~l~~d~~~~~~~~dl~~~f~ 37 (105)
T 3v4m_A 4 PTEVLC---LMNMVLPEELLDDEEYEEIVEDVRDECS 37 (105)
T ss_dssp CCSEEE---EESSCCGGGSSSHHHHHHHHHHHHHHHH
T ss_pred CCeEEE---EECCCCHHHccChHHHHHHHHHHHHHHH
Confidence 677654 3455666777776666667777777776
No 17
>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT family, structural genomics, NPPSFA; 1.80A {Sulfolobus tokodaii}
Probab=22.44 E-value=1.5e+02 Score=18.63 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=19.3
Q ss_pred ceeeeeeeeeec-cccccc-ccccccChHHHHHHHHHHHHHHHHH
Q 041379 28 QHLMPTRYTLDV-DLKVVV-TADSLQSKDKKMIACKETKKRLEER 70 (85)
Q Consensus 28 nHlmPTRY~vdi-~lk~~v-~~d~~~d~~~k~~a~ke~k~~feer 70 (85)
=|++| ||.-|- .+.-.- .... .+++.-.+....++..+++.
T Consensus 97 iHviP-r~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~lr~~l~~~ 139 (149)
T 2eo4_A 97 VHIIP-TWEGDYPDIFKSFKPRKE-QEKEYYELLQKIIRESIENL 139 (149)
T ss_dssp EEEEE-ECSSCCCTTSCCCCTTSC-CCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEC-CcCCCCcccccccCCCCC-CCHHHHHHHHHHHHHHHHHh
Confidence 38898 666553 121111 1111 34444455555566666544
No 18
>2kuy_A Prebacteriocin glycocin F; glycosylation, S-linked, antimic protein; HET: NAG; NMR {Lactobacillus plantarum}
Probab=20.24 E-value=3.8 Score=22.49 Aligned_cols=15 Identities=27% Similarity=0.600 Sum_probs=12.7
Q ss_pred ecCCCCCCCCCceeE
Q 041379 9 SFDDRTRERPNGHCL 23 (85)
Q Consensus 9 ~~ddgt~~rpy~hal 23 (85)
-+|.||.|.-|+||.
T Consensus 15 gydsgtcdymyshcf 29 (43)
T 2kuy_A 15 GYDSGTCDYMYSHCF 29 (43)
T ss_dssp CSSSSHHHHHHHHHH
T ss_pred CCCCcchhhhhhhcc
Confidence 378999999999986
Done!