Query 041381
Match_columns 307
No_of_seqs 240 out of 2156
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 06:30:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041381.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041381hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.4E-53 5.3E-58 419.8 24.9 304 2-307 57-440 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 2.5E-41 5.4E-46 300.3 14.0 216 90-307 1-279 (287)
3 PLN03210 Resistant to P. syrin 100.0 8.3E-33 1.8E-37 285.4 21.7 210 85-306 184-462 (1153)
4 PF01637 Arch_ATPase: Archaeal 98.3 2.3E-06 4.9E-11 73.0 7.8 138 87-228 1-233 (234)
5 PRK04841 transcriptional regul 98.1 7.2E-05 1.6E-09 76.8 14.4 149 127-290 120-278 (903)
6 TIGR00635 ruvB Holliday juncti 97.9 0.00076 1.6E-08 60.4 15.8 143 85-231 4-203 (305)
7 PRK00411 cdc6 cell division co 97.8 0.0013 2.8E-08 61.1 15.8 166 83-249 28-282 (394)
8 TIGR03015 pepcterm_ATPase puta 97.6 0.0057 1.2E-07 53.6 17.1 107 126-233 121-242 (269)
9 PRK00080 ruvB Holliday junctio 97.6 0.0022 4.7E-08 58.1 14.5 144 85-231 25-224 (328)
10 PRK06893 DNA replication initi 97.2 0.0022 4.7E-08 55.1 9.3 98 130-230 93-204 (229)
11 PRK13342 recombination factor 97.2 0.02 4.3E-07 53.7 16.1 144 85-232 12-199 (413)
12 PF05729 NACHT: NACHT domain 97.2 0.00099 2.1E-08 53.4 6.4 72 126-197 79-163 (166)
13 TIGR02928 orc1/cdc6 family rep 97.2 0.055 1.2E-06 49.6 18.7 143 84-226 14-243 (365)
14 COG3899 Predicted ATPase [Gene 96.9 0.0046 1E-07 62.9 9.3 110 175-294 210-325 (849)
15 PRK07003 DNA polymerase III su 96.7 0.033 7.1E-07 55.3 13.2 98 128-229 119-221 (830)
16 PRK05564 DNA polymerase III su 96.7 0.036 7.8E-07 49.8 12.5 92 128-227 93-188 (313)
17 TIGR03420 DnaA_homol_Hda DnaA 96.7 0.015 3.3E-07 49.4 9.6 136 91-231 23-203 (226)
18 COG3903 Predicted ATPase [Gene 96.4 0.0014 3E-08 59.7 1.6 173 118-296 78-258 (414)
19 COG2909 MalT ATP-dependent tra 96.4 0.052 1.1E-06 54.0 12.0 144 128-291 129-285 (894)
20 PRK04195 replication factor C 96.2 0.14 3E-06 49.0 13.9 144 85-234 14-207 (482)
21 PRK09087 hypothetical protein; 96.1 0.096 2.1E-06 44.8 11.0 94 130-229 89-195 (226)
22 PLN03025 replication factor C 96.0 0.068 1.5E-06 48.2 10.4 138 86-227 14-198 (319)
23 PRK00440 rfc replication facto 96.0 0.12 2.6E-06 46.3 12.1 140 85-228 17-202 (319)
24 COG2256 MGS1 ATPase related to 95.9 1.3 2.8E-05 40.8 17.7 174 97-277 39-266 (436)
25 PRK07471 DNA polymerase III su 95.9 0.14 3E-06 47.1 11.9 95 128-230 141-239 (365)
26 PRK12402 replication factor C 95.9 0.13 2.8E-06 46.5 11.6 141 85-229 15-226 (337)
27 PRK12323 DNA polymerase III su 95.8 0.096 2.1E-06 51.3 10.6 99 127-229 123-225 (700)
28 TIGR02397 dnaX_nterm DNA polym 95.7 0.18 4E-06 45.9 12.0 99 128-230 117-219 (355)
29 PRK07940 DNA polymerase III su 95.6 0.14 3.1E-06 47.5 11.0 94 127-229 116-213 (394)
30 PRK14963 DNA polymerase III su 95.6 0.37 8E-06 46.3 14.1 97 127-227 115-215 (504)
31 PF13173 AAA_14: AAA domain 95.6 0.018 3.8E-07 44.5 4.3 68 121-189 54-127 (128)
32 PRK13341 recombination factor 95.6 0.11 2.5E-06 51.9 10.8 134 86-223 29-211 (725)
33 PRK06645 DNA polymerase III su 95.6 0.2 4.4E-06 48.0 12.0 97 127-227 127-227 (507)
34 PRK08727 hypothetical protein; 95.6 0.17 3.8E-06 43.4 10.6 94 130-226 95-201 (233)
35 PRK14961 DNA polymerase III su 95.3 0.33 7.2E-06 44.6 12.2 98 128-229 119-220 (363)
36 PRK08691 DNA polymerase III su 95.3 0.12 2.7E-06 50.9 9.7 99 127-229 118-220 (709)
37 PRK14960 DNA polymerase III su 95.3 0.22 4.7E-06 49.0 11.2 139 86-228 16-218 (702)
38 TIGR01242 26Sp45 26S proteasom 95.2 0.12 2.6E-06 47.6 8.8 134 85-223 122-328 (364)
39 KOG0989 Replication factor C, 95.0 0.18 4E-06 44.5 8.8 140 85-228 36-229 (346)
40 TIGR02903 spore_lon_C ATP-depe 94.9 0.47 1E-05 46.8 12.6 53 177-232 346-398 (615)
41 PRK08084 DNA replication initi 94.8 0.41 8.9E-06 41.2 10.6 96 131-229 100-209 (235)
42 PRK14970 DNA polymerase III su 94.7 0.45 9.8E-06 43.7 11.4 95 127-225 107-205 (367)
43 TIGR00678 holB DNA polymerase 94.6 0.59 1.3E-05 38.5 10.8 89 127-225 95-187 (188)
44 PRK14964 DNA polymerase III su 94.4 0.55 1.2E-05 44.9 11.3 99 127-229 115-217 (491)
45 PRK14951 DNA polymerase III su 94.3 0.65 1.4E-05 45.7 11.9 98 128-229 124-225 (618)
46 PRK07764 DNA polymerase III su 94.3 0.57 1.2E-05 47.7 11.8 97 127-227 119-219 (824)
47 PRK14959 DNA polymerase III su 94.2 1.7 3.7E-05 42.7 14.4 103 127-233 118-225 (624)
48 PRK09112 DNA polymerase III su 94.1 1.4 3.1E-05 40.3 13.1 98 127-230 140-241 (351)
49 cd00009 AAA The AAA+ (ATPases 94.1 0.17 3.7E-06 38.9 6.2 29 89-117 2-30 (151)
50 PRK14956 DNA polymerase III su 93.9 0.98 2.1E-05 42.9 11.7 99 127-229 120-222 (484)
51 PRK05896 DNA polymerase III su 93.8 0.63 1.4E-05 45.4 10.6 100 128-231 119-223 (605)
52 PRK09111 DNA polymerase III su 93.7 0.86 1.9E-05 44.8 11.4 99 128-230 132-234 (598)
53 PRK14949 DNA polymerase III su 93.7 0.91 2E-05 46.3 11.7 99 127-229 118-220 (944)
54 PRK14962 DNA polymerase III su 93.6 0.97 2.1E-05 43.1 11.4 103 127-233 116-223 (472)
55 PRK06305 DNA polymerase III su 93.6 1.1 2.5E-05 42.4 11.8 99 127-229 120-223 (451)
56 PRK08903 DnaA regulatory inact 93.4 1.6 3.5E-05 37.0 11.5 100 130-233 92-203 (227)
57 PRK14955 DNA polymerase III su 93.3 0.93 2E-05 42.2 10.7 98 127-228 126-227 (397)
58 PRK14957 DNA polymerase III su 93.0 1.7 3.7E-05 42.1 12.1 99 127-229 118-221 (546)
59 PRK05642 DNA replication initi 92.9 2.1 4.5E-05 36.8 11.4 95 131-229 100-208 (234)
60 PRK14958 DNA polymerase III su 92.8 0.96 2.1E-05 43.6 10.1 99 127-229 118-220 (509)
61 PTZ00112 origin recognition co 92.8 0.75 1.6E-05 46.8 9.4 34 84-117 754-792 (1164)
62 PRK14950 DNA polymerase III su 92.5 2.3 5E-05 41.8 12.5 100 127-230 119-222 (585)
63 PRK06620 hypothetical protein; 92.4 1.1 2.3E-05 38.0 8.8 89 130-224 87-184 (214)
64 PRK08451 DNA polymerase III su 92.2 2.4 5.1E-05 41.0 11.8 99 127-229 116-218 (535)
65 PRK14969 DNA polymerase III su 92.1 1.6 3.4E-05 42.4 10.7 96 127-226 118-217 (527)
66 PF10443 RNA12: RNA12 protein; 92.1 3.6 7.9E-05 38.4 12.4 106 129-239 149-288 (431)
67 PRK07994 DNA polymerase III su 92.1 1.7 3.6E-05 43.1 10.8 99 127-229 118-220 (647)
68 PRK14971 DNA polymerase III su 92.0 2.3 5.1E-05 41.9 11.9 96 127-226 120-219 (614)
69 PRK07133 DNA polymerase III su 91.9 3.1 6.8E-05 41.7 12.5 96 127-226 117-216 (725)
70 TIGR02639 ClpA ATP-dependent C 91.8 0.54 1.2E-05 47.5 7.4 110 86-197 183-358 (731)
71 PF00308 Bac_DnaA: Bacterial d 91.4 1.5 3.3E-05 37.2 8.7 91 130-226 99-205 (219)
72 PRK05563 DNA polymerase III su 91.3 4.4 9.4E-05 39.6 12.8 98 127-228 118-219 (559)
73 COG1373 Predicted ATPase (AAA+ 91.3 1.2 2.6E-05 41.5 8.6 63 128-192 94-162 (398)
74 PRK03992 proteasome-activating 90.9 4.5 9.7E-05 37.6 12.1 133 86-223 132-337 (389)
75 PRK14952 DNA polymerase III su 90.8 3.9 8.5E-05 40.1 11.9 99 127-229 117-220 (584)
76 PRK06647 DNA polymerase III su 90.8 7.1 0.00015 38.2 13.6 99 127-229 118-220 (563)
77 CHL00095 clpC Clp protease ATP 90.2 0.73 1.6E-05 47.2 6.7 33 85-117 179-211 (821)
78 PRK14965 DNA polymerase III su 89.8 3.6 7.8E-05 40.4 10.9 98 128-229 119-221 (576)
79 PF05496 RuvB_N: Holliday junc 89.7 3.5 7.7E-05 35.1 9.2 145 85-233 24-225 (233)
80 PRK14086 dnaA chromosomal repl 89.2 3.5 7.6E-05 40.5 10.1 86 131-222 380-481 (617)
81 PRK14948 DNA polymerase III su 89.0 7.5 0.00016 38.5 12.4 100 127-230 120-223 (620)
82 PRK07399 DNA polymerase III su 88.9 7 0.00015 35.2 11.3 97 127-230 123-222 (314)
83 PRK14954 DNA polymerase III su 88.9 6.6 0.00014 38.9 11.8 94 127-224 126-223 (620)
84 PRK14953 DNA polymerase III su 88.6 11 0.00023 36.3 12.8 100 127-230 118-221 (486)
85 PHA02544 44 clamp loader, smal 88.4 2.3 4.9E-05 38.1 7.9 110 85-195 21-171 (316)
86 KOG2028 ATPase related to the 88.2 2.7 5.8E-05 38.4 7.9 134 87-224 140-331 (554)
87 TIGR03345 VI_ClpV1 type VI sec 88.1 1.5 3.3E-05 45.0 7.2 111 85-197 187-363 (852)
88 PTZ00454 26S protease regulato 87.8 6.3 0.00014 36.8 10.5 134 86-224 146-352 (398)
89 TIGR02881 spore_V_K stage V sp 87.7 4.1 8.9E-05 35.5 8.9 71 129-200 106-194 (261)
90 TIGR03346 chaperone_ClpB ATP-d 87.7 2.1 4.6E-05 44.1 8.0 32 86-117 174-205 (852)
91 KOG2035 Replication factor C, 86.4 15 0.00032 32.5 11.0 115 156-274 156-282 (351)
92 PRK10865 protein disaggregatio 85.8 3.7 8.1E-05 42.3 8.5 32 86-117 179-210 (857)
93 PF13191 AAA_16: AAA ATPase do 85.4 0.4 8.6E-06 39.0 1.2 32 86-117 1-35 (185)
94 PRK11034 clpA ATP-dependent Cl 85.0 1.7 3.7E-05 43.9 5.6 110 86-197 187-362 (758)
95 TIGR02880 cbbX_cfxQ probable R 85.0 5.6 0.00012 35.2 8.3 70 129-199 122-210 (284)
96 TIGR01241 FtsH_fam ATP-depende 84.4 9.9 0.00021 36.5 10.3 90 156-249 192-295 (495)
97 KOG2227 Pre-initiation complex 84.4 16 0.00035 34.5 11.1 46 176-223 317-362 (529)
98 PRK06871 DNA polymerase III su 84.4 30 0.00064 31.3 12.7 91 127-226 106-200 (325)
99 PRK07993 DNA polymerase III su 84.3 18 0.00039 32.9 11.4 92 127-227 107-202 (334)
100 COG1474 CDC6 Cdc6-related prot 84.3 22 0.00047 32.8 12.0 141 84-229 16-238 (366)
101 PRK05707 DNA polymerase III su 83.7 7.5 0.00016 35.2 8.7 94 128-229 106-203 (328)
102 TIGR00362 DnaA chromosomal rep 83.7 23 0.00049 33.0 12.2 115 131-249 202-337 (405)
103 COG0593 DnaA ATPase involved i 83.2 10 0.00022 35.4 9.4 72 131-205 178-265 (408)
104 CHL00181 cbbX CbbX; Provisiona 82.9 15 0.00032 32.7 10.0 70 129-199 123-211 (287)
105 CHL00176 ftsH cell division pr 81.6 24 0.00051 35.2 11.8 92 126-222 273-387 (638)
106 PTZ00361 26 proteosome regulat 80.3 8.1 0.00018 36.5 7.8 64 156-223 321-389 (438)
107 KOG0741 AAA+-type ATPase [Post 79.4 36 0.00077 33.0 11.5 104 123-233 593-716 (744)
108 PRK14088 dnaA chromosomal repl 79.2 12 0.00026 35.4 8.7 88 129-222 195-298 (440)
109 PRK00149 dnaA chromosomal repl 79.2 20 0.00042 34.0 10.2 113 131-249 214-349 (450)
110 PF05673 DUF815: Protein of un 78.8 43 0.00093 29.0 12.4 86 85-170 27-154 (249)
111 KOG0991 Replication factor C, 78.5 3.4 7.4E-05 35.5 4.2 33 85-117 27-59 (333)
112 PRK06090 DNA polymerase III su 78.0 46 0.001 30.0 11.6 91 127-229 107-201 (319)
113 PRK14087 dnaA chromosomal repl 76.8 11 0.00023 35.9 7.5 99 130-230 208-320 (450)
114 COG1875 NYN ribonuclease and A 76.7 6.4 0.00014 36.0 5.6 29 89-117 228-256 (436)
115 PF14516 AAA_35: AAA-like doma 75.7 62 0.0013 29.3 14.6 54 176-236 193-246 (331)
116 PRK12422 chromosomal replicati 74.8 15 0.00033 34.8 8.0 87 130-222 204-306 (445)
117 COG2384 Predicted SAM-dependen 73.4 8.1 0.00018 32.7 5.1 28 105-132 85-117 (226)
118 PRK08058 DNA polymerase III su 72.2 36 0.00077 30.8 9.5 68 127-195 109-180 (329)
119 PTZ00202 tuzin; Provisional 69.8 5.8 0.00012 37.5 3.8 34 84-117 261-297 (550)
120 PF00004 AAA: ATPase family as 68.0 18 0.0004 27.0 5.9 11 129-139 59-69 (132)
121 PRK08769 DNA polymerase III su 67.1 40 0.00086 30.5 8.6 90 127-230 112-209 (319)
122 PRK06964 DNA polymerase III su 66.7 36 0.00079 31.0 8.3 91 127-229 131-225 (342)
123 COG4992 ArgD Ornithine/acetylo 66.2 7.7 0.00017 35.9 3.8 48 92-139 172-228 (404)
124 PRK09533 bifunctional transald 65.0 25 0.00054 36.6 7.6 47 93-139 442-494 (948)
125 TIGR01243 CDC48 AAA family ATP 63.1 73 0.0016 32.4 10.5 134 85-223 453-657 (733)
126 TIGR00602 rad24 checkpoint pro 61.7 76 0.0016 31.7 10.0 33 85-117 84-121 (637)
127 cd05015 SIS_PGI_1 Phosphogluco 61.1 46 0.00099 26.5 7.1 70 93-166 6-83 (158)
128 TIGR03689 pup_AAA proteasome A 60.9 40 0.00087 32.6 7.8 71 128-199 289-380 (512)
129 COG0249 MutS Mismatch repair A 60.9 80 0.0017 32.6 10.3 98 127-234 685-793 (843)
130 PF13177 DNA_pol3_delta2: DNA 60.0 26 0.00057 28.0 5.6 57 128-185 102-162 (162)
131 PRK00973 glucose-6-phosphate i 57.2 35 0.00077 32.3 6.7 44 93-138 60-118 (446)
132 TIGR01243 CDC48 AAA family ATP 53.6 1.3E+02 0.0029 30.5 10.6 43 177-223 339-381 (733)
133 COG2812 DnaX DNA polymerase II 52.7 1.9E+02 0.0042 28.0 10.8 92 128-223 119-214 (515)
134 KOG0743 AAA+-type ATPase [Post 51.2 2.2E+02 0.0048 27.0 10.6 87 159-251 340-433 (457)
135 PRK04132 replication factor C 51.2 1.3E+02 0.0028 31.1 9.9 142 85-230 574-732 (846)
136 KOG2543 Origin recognition com 51.1 26 0.00057 32.4 4.5 34 84-117 5-41 (438)
137 TIGR03345 VI_ClpV1 type VI sec 49.6 23 0.00049 36.7 4.4 34 84-117 565-607 (852)
138 PF06144 DNA_pol3_delta: DNA p 49.5 61 0.0013 25.7 6.2 132 91-226 12-163 (172)
139 cd00561 CobA_CobO_BtuR ATP:cor 49.5 13 0.00029 29.8 2.2 45 120-168 86-139 (159)
140 PRK14097 pgi glucose-6-phospha 49.1 62 0.0013 30.8 6.9 34 106-139 73-122 (448)
141 PRK14096 pgi glucose-6-phospha 48.5 56 0.0012 31.7 6.5 60 105-166 113-178 (528)
142 CHL00195 ycf46 Ycf46; Provisio 48.3 85 0.0018 30.2 7.7 95 127-224 317-430 (489)
143 PRK03868 glucose-6-phosphate i 47.8 78 0.0017 29.7 7.3 69 94-166 45-121 (410)
144 PRK00179 pgi glucose-6-phospha 47.6 76 0.0017 31.0 7.4 35 105-139 144-185 (548)
145 PRK10536 hypothetical protein; 46.7 34 0.00075 29.9 4.4 30 86-117 56-85 (262)
146 PRK10733 hflB ATP-dependent me 46.2 1.1E+02 0.0024 30.6 8.5 63 156-222 289-356 (644)
147 PRK15455 PrkA family serine pr 44.0 1.4E+02 0.0031 29.6 8.4 106 86-225 77-193 (644)
148 PF11868 DUF3388: Protein of u 43.5 56 0.0012 26.4 4.7 41 93-133 37-85 (192)
149 PF04816 DUF633: Family of unk 43.5 23 0.0005 29.7 2.8 12 106-117 67-78 (205)
150 PF00342 PGI: Phosphoglucose i 43.0 62 0.0013 31.1 6.0 57 106-166 96-159 (486)
151 KOG2170 ATPase of the AAA+ sup 42.8 25 0.00054 31.4 3.0 34 84-117 81-121 (344)
152 PRK13236 nitrogenase reductase 42.5 30 0.00066 30.7 3.6 29 103-133 3-40 (296)
153 PF02463 SMC_N: RecF/RecN/SMC 42.2 10 0.00022 31.8 0.5 45 128-173 158-205 (220)
154 smart00763 AAA_PrkA PrkA AAA d 40.9 45 0.00097 30.7 4.4 53 85-137 51-121 (361)
155 KOG1514 Origin recognition com 40.8 4E+02 0.0087 27.0 11.5 34 84-117 395-433 (767)
156 PRK08116 hypothetical protein; 40.8 21 0.00046 31.3 2.3 35 131-166 181-220 (268)
157 PRK06696 uridine kinase; Valid 40.1 43 0.00093 28.2 4.1 51 90-140 3-64 (223)
158 KOG2755 Oxidoreductase [Genera 39.6 85 0.0018 27.7 5.6 55 83-138 111-166 (334)
159 TIGR01069 mutS2 MutS2 family p 39.5 23 0.0005 36.1 2.6 113 127-251 401-522 (771)
160 PRK10787 DNA-binding ATP-depen 39.3 1.1E+02 0.0023 31.6 7.2 34 84-117 321-360 (784)
161 TIGR00763 lon ATP-dependent pr 38.0 1.6E+02 0.0036 30.1 8.5 34 84-117 319-358 (775)
162 TIGR01128 holA DNA polymerase 37.8 2.8E+02 0.006 24.2 11.2 96 127-226 45-150 (302)
163 TIGR03346 chaperone_ClpB ATP-d 36.8 49 0.0011 34.3 4.5 34 84-117 564-606 (852)
164 PF14532 Sigma54_activ_2: Sigm 34.0 36 0.00078 26.2 2.4 76 88-167 1-110 (138)
165 COG0542 clpA ATP-binding subun 33.9 47 0.001 33.8 3.7 110 86-197 171-346 (786)
166 PRK00409 recombination and DNA 33.8 76 0.0017 32.5 5.3 113 127-251 406-527 (782)
167 TIGR02639 ClpA ATP-dependent C 33.7 82 0.0018 32.0 5.5 34 84-117 453-495 (731)
168 PLN02649 glucose-6-phosphate i 33.6 1.4E+02 0.003 29.3 6.8 58 105-166 146-215 (560)
169 KOG2228 Origin recognition com 33.6 3E+02 0.0066 25.3 8.3 68 129-197 138-219 (408)
170 PRK08181 transposase; Validate 33.3 23 0.0005 31.1 1.3 9 130-138 169-177 (269)
171 PRK07132 DNA polymerase III su 31.8 2.4E+02 0.0052 25.2 7.6 92 127-228 89-184 (299)
172 CHL00095 clpC Clp protease ATP 31.2 76 0.0017 32.7 4.9 34 84-117 508-550 (821)
173 cd02117 NifH_like This family 31.2 53 0.0012 27.3 3.2 29 107-135 1-37 (212)
174 PF10236 DAP3: Mitochondrial r 30.8 1.4E+02 0.0031 26.7 6.0 49 178-226 258-306 (309)
175 PTZ00430 glucose-6-phosphate i 30.4 1.7E+02 0.0036 28.7 6.7 35 105-139 141-187 (552)
176 COG2109 BtuR ATP:corrinoid ade 29.2 48 0.001 27.5 2.4 49 118-167 111-165 (198)
177 KOG2336 Molybdopterin biosynth 29.0 2.7E+02 0.0058 24.8 7.0 32 106-137 82-117 (422)
178 PF04665 Pox_A32: Poxvirus A32 28.8 74 0.0016 27.5 3.6 11 129-139 99-109 (241)
179 KOG2004 Mitochondrial ATP-depe 28.3 62 0.0014 32.6 3.4 34 84-117 410-449 (906)
180 PLN00020 ribulose bisphosphate 28.1 77 0.0017 29.5 3.8 63 155-224 266-333 (413)
181 PF05008 V-SNARE: Vesicle tran 27.9 2E+02 0.0043 19.6 6.2 50 5-62 26-75 (79)
182 KOG0731 AAA+-type ATPase conta 27.9 6.5E+02 0.014 25.9 10.3 138 85-226 311-521 (774)
183 PF13604 AAA_30: AAA domain; P 27.6 1.2E+02 0.0026 25.0 4.6 32 130-164 95-128 (196)
184 COG3267 ExeA Type II secretory 27.4 2.1E+02 0.0046 25.0 6.1 52 179-230 195-246 (269)
185 PRK12377 putative replication 27.2 46 0.001 28.8 2.2 10 129-138 164-173 (248)
186 PF03861 ANTAR: ANTAR domain; 27.0 77 0.0017 20.2 2.7 33 180-216 24-56 (56)
187 COG0542 clpA ATP-binding subun 26.3 89 0.0019 31.9 4.1 34 84-117 490-532 (786)
188 TIGR01287 nifH nitrogenase iro 25.9 77 0.0017 27.5 3.4 29 107-135 1-37 (275)
189 COG0466 Lon ATP-dependent Lon 24.8 1.8E+02 0.004 29.4 5.9 34 84-117 322-361 (782)
190 PRK07414 cob(I)yrinic acid a,c 24.8 58 0.0013 26.7 2.2 48 119-167 105-158 (178)
191 COG1222 RPT1 ATP-dependent 26S 24.6 5.7E+02 0.012 23.7 11.5 132 89-225 155-359 (406)
192 PRK05986 cob(I)alamin adenolsy 24.1 66 0.0014 26.7 2.4 48 119-167 105-158 (191)
193 PF02284 COX5A: Cytochrome c o 24.0 2.8E+02 0.006 20.7 5.3 64 188-251 25-91 (108)
194 KOG1401 Acetylornithine aminot 23.1 1.8E+02 0.0039 27.2 5.1 48 92-139 191-250 (433)
195 TIGR00708 cobA cob(I)alamin ad 23.1 48 0.0011 27.0 1.4 48 119-167 87-140 (173)
196 PRK08117 4-aminobutyrate amino 22.9 52 0.0011 30.9 1.8 30 110-139 215-251 (433)
197 PRK13230 nitrogenase reductase 22.5 1.2E+02 0.0025 26.6 3.8 27 107-133 2-35 (279)
198 COG1157 FliI Flagellar biosynt 22.4 2.6E+02 0.0056 26.4 6.0 27 91-117 173-202 (441)
199 PRK07452 DNA polymerase III su 22.4 4.8E+02 0.01 23.2 8.0 10 155-164 92-101 (326)
200 PRK09264 diaminobutyrate--2-ox 22.3 49 0.0011 31.1 1.5 30 110-139 206-242 (425)
201 PRK08699 DNA polymerase III su 22.3 2.5E+02 0.0053 25.4 6.0 40 157-196 143-184 (325)
202 KOG0391 SNF2 family DNA-depend 22.2 4.3E+02 0.0093 28.8 8.0 81 89-170 1260-1341(1958)
203 PRK12403 putative aminotransfe 21.8 51 0.0011 31.4 1.5 30 110-139 230-266 (460)
204 PRK06062 hypothetical protein; 21.7 52 0.0011 31.2 1.5 30 110-139 222-258 (451)
205 PF12775 AAA_7: P-loop contain 21.5 2.1E+02 0.0046 25.1 5.2 12 127-138 99-110 (272)
206 cd01132 F1_ATPase_alpha F1 ATP 21.1 1.8E+02 0.004 25.6 4.7 21 126-146 159-180 (274)
207 PRK09183 transposase/IS protei 21.0 61 0.0013 28.2 1.7 11 129-139 165-175 (259)
208 PF00899 ThiF: ThiF family; I 20.9 1.6E+02 0.0035 22.4 4.0 31 107-137 3-35 (135)
209 cd01483 E1_enzyme_family Super 20.6 1.7E+02 0.0037 22.4 4.1 28 109-136 2-31 (143)
210 PF00006 ATP-synt_ab: ATP synt 20.6 1.5E+02 0.0034 25.0 4.1 20 118-139 97-116 (215)
211 PF02562 PhoH: PhoH-like prote 20.6 90 0.0019 26.2 2.6 34 129-166 120-155 (205)
212 PRK14700 recombination factor 20.4 3.7E+02 0.0081 24.0 6.5 69 155-223 5-81 (300)
213 PRK06526 transposase; Provisio 20.3 62 0.0014 28.1 1.7 11 129-139 160-170 (254)
214 cd01135 V_A-ATPase_B V/A-type 20.3 2.4E+02 0.0051 24.9 5.2 15 126-140 164-178 (276)
215 PRK13235 nifH nitrogenase redu 20.3 1.1E+02 0.0024 26.6 3.3 27 107-133 2-35 (274)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-53 Score=419.84 Aligned_cols=304 Identities=48% Similarity=0.841 Sum_probs=267.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHh----------------hhhcCccCCCchhhhhHHHHHHHHHHHHHhHHhcCC
Q 041381 2 VQGWLSRVEAVEAEVGELTRDTSQEIEK----------------LCLGGYCSKNCKSSYKFGKKVSKKLQLVATLIDDGD 65 (307)
Q Consensus 2 v~~Wl~~lr~~ayd~ed~ld~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~ 65 (307)
+.+|.+.+++++|+++|.++.|..+... -|+.++|+.+....+++++++-++...++.+..++.
T Consensus 57 ~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~ 136 (889)
T KOG4658|consen 57 RVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGV 136 (889)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccc
Confidence 5789999999999999999998754432 244466777788888899999999999999988887
Q ss_pred cceeeec-cCCCCcCCCCCCCce-eeccccHHHHHHHHhcCCceEEEEEcCchh--------------------------
Q 041381 66 FAVVAEK-VPQPAVDKRPLQPTI-IGLESTFDKVWRCLVEGQFGIIGLYGMGGK-------------------------- 117 (307)
Q Consensus 66 ~~~~~~~-~~~~~~~~~~~~~~~-vGr~~~~~~l~~~L~~~~~~vi~I~G~gGi-------------------------- 117 (307)
|..+... .+......+|..+.. ||.+..++++++.|.+++..++||+||||+
T Consensus 137 ~~~~~~~~~~~~~~e~~~~~~~~~VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV 216 (889)
T KOG4658|consen 137 FEVVGESLDPREKVETRPIQSESDVGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWV 216 (889)
T ss_pred eecccccccchhhcccCCCCccccccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEE
Confidence 7766542 222222333333333 999999999999999998899999999999
Q ss_pred ----------------------------------HHHHHHHhcCCeEEEEEeCcCCHHHHhhcCCCCCCCCCCCeEEEEe
Q 041381 118 ----------------------------------ASGIFNLLSKMKFLLLLDDIWERIDLAKVGVPFPASSRNASKIVFT 163 (307)
Q Consensus 118 ----------------------------------~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IivT 163 (307)
+..|.+.|++|||||||||||+..+|+.++.+ +|...+||||++|
T Consensus 217 ~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~-~p~~~~g~KvvlT 295 (889)
T KOG4658|consen 217 VVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVP-FPSRENGSKVVLT 295 (889)
T ss_pred EEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCC-CCCccCCeEEEEE
Confidence 55688899999999999999999999999999 9998999999999
Q ss_pred cCChhhhhc-ccccceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChHHHHHHHHHHcCCCChhHH
Q 041381 164 TRLVDVCGL-MEAQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALITTSRAMSSKKRPEER 242 (307)
Q Consensus 164 tr~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ig~~L~~~~~~~~w 242 (307)
||++.||.. +++...++++.|+++|||+||++.+|......++.++++|++++++|+|+|||++++|+.|+.+++.++|
T Consensus 296 TRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW 375 (889)
T KOG4658|consen 296 TRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEW 375 (889)
T ss_pred eccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHH
Confidence 999999998 8888899999999999999999999988656777799999999999999999999999999999999999
Q ss_pred HHHHHHHhhc-cccCCCChhHHHHHHHHhhcCCCCCchhHHHhhhcCCCCCccccHHHHHHHhhcC
Q 041381 243 SYAIQMLRRS-AYEFPGMEKEVFRLLKFSYDSLSSDVLRSCLLYCSLFPEDYQISKTELIECWIGE 307 (307)
Q Consensus 243 ~~~l~~l~~~-~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~a~fp~~~~i~~~~Li~~WiaE 307 (307)
+++.+.+.+. ..+.++..+.++++|.+||+.||+ ++|.||+|||+||+||.|+++.|+.+||||
T Consensus 376 ~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaE 440 (889)
T KOG4658|consen 376 RRALNVLKSSLAADFSGMEESILPILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAE 440 (889)
T ss_pred HHHHccccccccCCCCchhhhhHHhhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhc
Confidence 9999999887 455667788999999999999997 699999999999999999999999999998
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.5e-41 Score=300.35 Aligned_cols=216 Identities=35% Similarity=0.608 Sum_probs=178.5
Q ss_pred ccccHHHHHHHHhc--CCceEEEEEcCchh--------------------------------------------------
Q 041381 90 LESTFDKVWRCLVE--GQFGIIGLYGMGGK-------------------------------------------------- 117 (307)
Q Consensus 90 r~~~~~~l~~~L~~--~~~~vi~I~G~gGi-------------------------------------------------- 117 (307)
||.++++|.+.|.+ .+.++|+|+||||+
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78899999999998 58999999999999
Q ss_pred ----------HHHHHHHhcCCeEEEEEeCcCCHHHHhhcCCCCCCCCCCCeEEEEecCChhhhhcccc-cceeecCCCCH
Q 041381 118 ----------ASGIFNLLSKMKFLLLLDDIWERIDLAKVGVPFPASSRNASKIVFTTRLVDVCGLMEA-QKTFKVECFAD 186 (307)
Q Consensus 118 ----------~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IivTtr~~~v~~~~~~-~~~~~l~~L~~ 186 (307)
.+.+.+.|+++++||||||||+...|+.+... ++....||+||||||+..++..++. ...+++++|++
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~-~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREP-LPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH--------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred cccccccccccccchhhhccccceeeeeeecccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence 46778888999999999999999999998877 7777789999999999999887765 67899999999
Q ss_pred HhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChHHHHHHHHHHcCCCChhHHHHHHHHHhhccccCCCChhHHHHH
Q 041381 187 QDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALITTSRAMSSKKRPEERSYAIQMLRRSAYEFPGMEKEVFRL 266 (307)
Q Consensus 187 ~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ig~~L~~~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~ 266 (307)
++|++||.+.++.......+.+.+.+++|+++|+|+|||++++|++|+.+.+..+|+++++.+........+....+..+
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 239 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSA 239 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999866533446677899999999999999999999999776688999999998887765544456799999
Q ss_pred HHHhhcCCCCCchhHHHhhhcCCCCCccccHHHHHHHhhcC
Q 041381 267 LKFSYDSLSSDVLRSCLLYCSLFPEDYQISKTELIECWIGE 307 (307)
Q Consensus 267 l~~sy~~L~~~~~k~cfl~~a~fp~~~~i~~~~Li~~WiaE 307 (307)
+.+||+.||+ .+|+||+|||+||+++.|+++.|+++|+||
T Consensus 240 l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e 279 (287)
T PF00931_consen 240 LELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAE 279 (287)
T ss_dssp HHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-
T ss_pred ceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHC
Confidence 9999999999 599999999999999999999999999997
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=8.3e-33 Score=285.38 Aligned_cols=210 Identities=19% Similarity=0.259 Sum_probs=179.5
Q ss_pred CceeeccccHHHHHHHHhc--CCceEEEEEcCchh-----H---------------------------------------
Q 041381 85 PTIIGLESTFDKVWRCLVE--GQFGIIGLYGMGGK-----A--------------------------------------- 118 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGi-----~--------------------------------------- 118 (307)
..+||++..++++..+|.- +++++|+|+||||+ +
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~ 263 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNM 263 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccch
Confidence 5689999999999988753 37899999999999 0
Q ss_pred -----------------------HHHHHHhcCCeEEEEEeCcCCHHHHhhcCCCCCCCCCCCeEEEEecCChhhhhcccc
Q 041381 119 -----------------------SGIFNLLSKMKFLLLLDDIWERIDLAKVGVPFPASSRNASKIVFTTRLVDVCGLMEA 175 (307)
Q Consensus 119 -----------------------~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IivTtr~~~v~~~~~~ 175 (307)
..+++.+++||+||||||||+..+|+.+... ....++||+||||||+..++..++.
T Consensus 264 ~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~-~~~~~~GsrIIiTTrd~~vl~~~~~ 342 (1153)
T PLN03210 264 KLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQ-TQWFGSGSRIIVITKDKHFLRAHGI 342 (1153)
T ss_pred hHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhh-CccCCCCcEEEEEeCcHHHHHhcCC
Confidence 1234556778999999999999999998765 5666889999999999999987777
Q ss_pred cceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChHHHHHHHHHHcCCCChhHHHHHHHHHhhcccc
Q 041381 176 QKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALITTSRAMSSKKRPEERSYAIQMLRRSAYE 255 (307)
Q Consensus 176 ~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ig~~L~~~~~~~~w~~~l~~l~~~~~~ 255 (307)
.+.|+++.|++++||+||+++||... ..+..+.+++++|+++|+|+|||++++|+.|++ ++..+|+.+++.|+...
T Consensus 343 ~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~~L~~~~-- 418 (1153)
T PLN03210 343 DHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLPRLRNGL-- 418 (1153)
T ss_pred CeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHHHHHhCc--
Confidence 88999999999999999999999765 344568899999999999999999999999998 68999999999887643
Q ss_pred CCCChhHHHHHHHHhhcCCCCCchhHHHhhhcCCCCCccccHHHHHHHhhc
Q 041381 256 FPGMEKEVFRLLKFSYDSLSSDVLRSCLLYCSLFPEDYQISKTELIECWIG 306 (307)
Q Consensus 256 ~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~a~fp~~~~i~~~~Li~~Wia 306 (307)
++++..+|++||+.|+++..|.||+++|+||.+..++. +..|+|
T Consensus 419 ----~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~---v~~~l~ 462 (1153)
T PLN03210 419 ----DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVND---IKLLLA 462 (1153)
T ss_pred ----cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHH---HHHHHH
Confidence 34899999999999987448999999999999876643 555654
No 4
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.30 E-value=2.3e-06 Score=73.02 Aligned_cols=138 Identities=20% Similarity=0.190 Sum_probs=76.9
Q ss_pred eeeccccHHHHHHHHhcCCceEEEEEcCchh---------------------------------HHH-------------
Q 041381 87 IIGLESTFDKVWRCLVEGQFGIIGLYGMGGK---------------------------------ASG------------- 120 (307)
Q Consensus 87 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGi---------------------------------~~~------------- 120 (307)
|+||++++++|.+++..+....+.|+|..|+ ...
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSE 80 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHH
Confidence 6899999999999888776788889999888 001
Q ss_pred -HH---------------------------HHhc--CCeEEEEEeCcCCHH-----------HHhhcCCCCCCCCCCCeE
Q 041381 121 -IF---------------------------NLLS--KMKFLLLLDDIWERI-----------DLAKVGVPFPASSRNASK 159 (307)
Q Consensus 121 -l~---------------------------~~l~--~kr~LlVlDdv~~~~-----------~~~~l~~~~~~~~~~gs~ 159 (307)
+. +.+. +++.+||+||+.... .+..+... .....+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~- 158 (234)
T PF01637_consen 81 ALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDS-LLSQQNVS- 158 (234)
T ss_dssp HHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TTEE-
T ss_pred HHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhh-ccccCCce-
Confidence 11 1111 245999999996544 11111111 22233344
Q ss_pred EEEecCChhhhhc--------ccccceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChHHHHH
Q 041381 160 IVFTTRLVDVCGL--------MEAQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALIT 228 (307)
Q Consensus 160 IivTtr~~~v~~~--------~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ 228 (307)
+|+++........ .+....+.+++|+.+++++++...+... ... +.-.+..++|...+||.|..|..
T Consensus 159 ~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 159 IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 4455444443322 2333458999999999999999976433 122 22355669999999999998754
No 5
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.07 E-value=7.2e-05 Score=76.84 Aligned_cols=149 Identities=15% Similarity=0.190 Sum_probs=91.6
Q ss_pred CCeEEEEEeCcCCHH--HHhhcCCCCCCCCCCCeEEEEecCChhhh---hcccccceeecC----CCCHHhHHHHHHHHh
Q 041381 127 KMKFLLLLDDIWERI--DLAKVGVPFPASSRNASKIVFTTRLVDVC---GLMEAQKTFKVE----CFADQDAWELFLKKV 197 (307)
Q Consensus 127 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~gs~IivTtr~~~v~---~~~~~~~~~~l~----~L~~~e~~~Lf~~~~ 197 (307)
+.+++||+||+...+ ....+...++.....+.++|||||...-. ..........+. +|+.+|+.++|....
T Consensus 120 ~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~ 199 (903)
T PRK04841 120 HQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRL 199 (903)
T ss_pred CCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhcc
Confidence 578999999997532 11111111123334567898999984221 111112244555 999999999998877
Q ss_pred CCCCCCCCCChHHHHHHHHHHCCCChHHHHHHHHHHcCCCChhHHHHHHHHHhhccccCCCChhHHHHHHHH-hhcCCCC
Q 041381 198 GQETLESHPDIPELAQTVAKECSGLPLALITTSRAMSSKKRPEERSYAIQMLRRSAYEFPGMEKEVFRLLKF-SYDSLSS 276 (307)
Q Consensus 198 ~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ig~~L~~~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~-sy~~L~~ 276 (307)
|..- -.+....|.+.|+|.|+++..++..++...... ......+.. . ....+...+.- -+..||+
T Consensus 200 ~~~~------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~--~~~~~~~~~----~--~~~~~~~~l~~~v~~~l~~ 265 (903)
T PRK04841 200 SSPI------EAAESSRLCDDVEGWATALQLIALSARQNNSSL--HDSARRLAG----I--NASHLSDYLVEEVLDNVDL 265 (903)
T ss_pred CCCC------CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCch--hhhhHhhcC----C--CchhHHHHHHHHHHhcCCH
Confidence 6432 245678999999999999999987776532110 011111100 0 01234444333 4789999
Q ss_pred CchhHHHhhhcCCC
Q 041381 277 DVLRSCLLYCSLFP 290 (307)
Q Consensus 277 ~~~k~cfl~~a~fp 290 (307)
+ .+..++..|+++
T Consensus 266 ~-~~~~l~~~a~~~ 278 (903)
T PRK04841 266 E-TRHFLLRCSVLR 278 (903)
T ss_pred H-HHHHHHHhcccc
Confidence 5 999999999997
No 6
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.88 E-value=0.00076 Score=60.37 Aligned_cols=143 Identities=18% Similarity=0.171 Sum_probs=88.7
Q ss_pred CceeeccccHHHHHHHHhc-----CCceEEEEEcCchh-----HH----------------------HHHHHhc--CCeE
Q 041381 85 PTIIGLESTFDKVWRCLVE-----GQFGIIGLYGMGGK-----AS----------------------GIFNLLS--KMKF 130 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGi-----~~----------------------~l~~~l~--~kr~ 130 (307)
.+|||+++.++.|..++.. .....+.++|++|+ .. .+...+. +...
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 83 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAILTNLEEGD 83 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHHHHHHhcccCC
Confidence 3689999999999888863 23556789999999 11 1111111 2346
Q ss_pred EEEEeCcCCH--HHHhhcCCCCC-------------------CCCCCCeEEEEecCChhhhhcc--cccceeecCCCCHH
Q 041381 131 LLLLDDIWER--IDLAKVGVPFP-------------------ASSRNASKIVFTTRLVDVCGLM--EAQKTFKVECFADQ 187 (307)
Q Consensus 131 LlVlDdv~~~--~~~~~l~~~~~-------------------~~~~~gs~IivTtr~~~v~~~~--~~~~~~~l~~L~~~ 187 (307)
++++|++... ...+.+... + ....+.+-|..||+...+...+ .....+.+++++.+
T Consensus 84 vl~iDEi~~l~~~~~e~l~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~ 162 (305)
T TIGR00635 84 VLFIDEIHRLSPAVEELLYPA-MEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVE 162 (305)
T ss_pred EEEEehHhhhCHHHHHHhhHH-HhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEEeCCCCHH
Confidence 8899998642 111111100 0 0011245566677765443322 11346789999999
Q ss_pred hHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChHHHHHHHH
Q 041381 188 DAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALITTSR 231 (307)
Q Consensus 188 e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ig~ 231 (307)
+..+++.+.++..... --.+....|++.|+|.|-.+..++.
T Consensus 163 e~~~il~~~~~~~~~~---~~~~al~~ia~~~~G~pR~~~~ll~ 203 (305)
T TIGR00635 163 ELAEIVSRSAGLLNVE---IEPEAALEIARRSRGTPRIANRLLR 203 (305)
T ss_pred HHHHHHHHHHHHhCCC---cCHHHHHHHHHHhCCCcchHHHHHH
Confidence 9999999988654322 2245678899999999976654444
No 7
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.76 E-value=0.0013 Score=61.10 Aligned_cols=166 Identities=13% Similarity=0.099 Sum_probs=93.0
Q ss_pred CCCceeeccccHHHHHHHHhcC----CceEEEEEcCchh-----------------------------------------
Q 041381 83 LQPTIIGLESTFDKVWRCLVEG----QFGIIGLYGMGGK----------------------------------------- 117 (307)
Q Consensus 83 ~~~~~vGr~~~~~~l~~~L~~~----~~~vi~I~G~gGi----------------------------------------- 117 (307)
.+..++||++++++|...|... ....+.|+|.+|+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 3567999999999999988432 3456779999998
Q ss_pred ------------------HHHHHHHhc--CCeEEEEEeCcCCHH------HHhhcCCCCCCCC-CCCeEEEEecCChhhh
Q 041381 118 ------------------ASGIFNLLS--KMKFLLLLDDIWERI------DLAKVGVPFPASS-RNASKIVFTTRLVDVC 170 (307)
Q Consensus 118 ------------------~~~l~~~l~--~kr~LlVlDdv~~~~------~~~~l~~~~~~~~-~~gs~IivTtr~~~v~ 170 (307)
.+.+.+.+. ++..+||+|+++... .+..+... +... +.+..+|.++....+.
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~-~~~~~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRA-HEEYPGARIGVIGISSDLTFL 186 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHh-hhccCCCeEEEEEEECCcchh
Confidence 011112222 345889999997632 23333221 1111 1123356666554433
Q ss_pred hccc-------ccceeecCCCCHHhHHHHHHHHhCC---CCCCCCCChHHHHHHHHHHCCCChHHHHHHHHHH----cCC
Q 041381 171 GLME-------AQKTFKVECFADQDAWELFLKKVGQ---ETLESHPDIPELAQTVAKECSGLPLALITTSRAM----SSK 236 (307)
Q Consensus 171 ~~~~-------~~~~~~l~~L~~~e~~~Lf~~~~~~---~~~~~~~~l~~~~~~i~~~c~GlPLai~~ig~~L----~~~ 236 (307)
.... ....+.+.+++.++..+++...+.. ...-.+..+..+++......|..+.|+.++-... ...
T Consensus 187 ~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~ 266 (394)
T PRK00411 187 YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREG 266 (394)
T ss_pred hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence 2211 1246789999999999999887632 1111122233334433333566788877764322 111
Q ss_pred ---CChhHHHHHHHHH
Q 041381 237 ---KRPEERSYAIQML 249 (307)
Q Consensus 237 ---~~~~~w~~~l~~l 249 (307)
-+.++...+++..
T Consensus 267 ~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 267 SRKVTEEDVRKAYEKS 282 (394)
T ss_pred CCCcCHHHHHHHHHHH
Confidence 2556666655544
No 8
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.63 E-value=0.0057 Score=53.56 Aligned_cols=107 Identities=8% Similarity=0.093 Sum_probs=67.5
Q ss_pred cCCeEEEEEeCcCCH--HHHhhcCC--CCCCCCCCCeEEEEecCChhhhhcc----------cccceeecCCCCHHhHHH
Q 041381 126 SKMKFLLLLDDIWER--IDLAKVGV--PFPASSRNASKIVFTTRLVDVCGLM----------EAQKTFKVECFADQDAWE 191 (307)
Q Consensus 126 ~~kr~LlVlDdv~~~--~~~~~l~~--~~~~~~~~gs~IivTtr~~~v~~~~----------~~~~~~~l~~L~~~e~~~ 191 (307)
.+++.++|+||++.. ..++.+.. .+.........|++|.... ....+ .....+.+++++.+|..+
T Consensus 121 ~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~ 199 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETRE 199 (269)
T ss_pred CCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHHH
Confidence 567899999999874 23444321 1011222334556665433 21111 113467899999999999
Q ss_pred HHHHHhCCCCCCC-CCChHHHHHHHHHHCCCChHHHHHHHHHH
Q 041381 192 LFLKKVGQETLES-HPDIPELAQTVAKECSGLPLALITTSRAM 233 (307)
Q Consensus 192 Lf~~~~~~~~~~~-~~~l~~~~~~i~~~c~GlPLai~~ig~~L 233 (307)
++...+....... ..-..+..+.|++.|+|.|..+..++..+
T Consensus 200 ~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 200 YIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9987764322111 12245788999999999999999998776
No 9
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.61 E-value=0.0022 Score=58.14 Aligned_cols=144 Identities=16% Similarity=0.100 Sum_probs=88.7
Q ss_pred CceeeccccHHHHHHHHhc-----CCceEEEEEcCchh---------------------------HHHHHHHhc--CCeE
Q 041381 85 PTIIGLESTFDKVWRCLVE-----GQFGIIGLYGMGGK---------------------------ASGIFNLLS--KMKF 130 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGi---------------------------~~~l~~~l~--~kr~ 130 (307)
.+|+|+++.++.+...+.. .....+.++|++|+ ...+...+. ++..
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 104 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPGDLAAILTNLEEGD 104 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChHHHHHHHHhcccCC
Confidence 4689999999988877753 23567889999999 111222221 2456
Q ss_pred EEEEeCcCCHH--HHhhcCC---C----C-CC----------CCCCCeEEEEecCChhhhhccc--ccceeecCCCCHHh
Q 041381 131 LLLLDDIWERI--DLAKVGV---P----F-PA----------SSRNASKIVFTTRLVDVCGLME--AQKTFKVECFADQD 188 (307)
Q Consensus 131 LlVlDdv~~~~--~~~~l~~---~----~-~~----------~~~~gs~IivTtr~~~v~~~~~--~~~~~~l~~L~~~e 188 (307)
+|++|++.... ..+.+.. . . +. .-.+.+-|..||+...+...+. ....+.+++++.++
T Consensus 105 vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e 184 (328)
T PRK00080 105 VLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEE 184 (328)
T ss_pred EEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHH
Confidence 88999996421 1111100 0 0 00 0012455666777554433221 13468999999999
Q ss_pred HHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChHHHHHHHH
Q 041381 189 AWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALITTSR 231 (307)
Q Consensus 189 ~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ig~ 231 (307)
..+++.+.++...... -.+....|++.|+|.|-.+..+..
T Consensus 185 ~~~il~~~~~~~~~~~---~~~~~~~ia~~~~G~pR~a~~~l~ 224 (328)
T PRK00080 185 LEKIVKRSARILGVEI---DEEGALEIARRSRGTPRIANRLLR 224 (328)
T ss_pred HHHHHHHHHHHcCCCc---CHHHHHHHHHHcCCCchHHHHHHH
Confidence 9999999887654222 345789999999999965544443
No 10
>PRK06893 DNA replication initiation factor; Validated
Probab=97.25 E-value=0.0022 Score=55.05 Aligned_cols=98 Identities=12% Similarity=0.115 Sum_probs=60.3
Q ss_pred EEEEEeCcCCH---HHHhhcCCCCCCC-CCCCeEEEE-ecCC---------hhhhhcccccceeecCCCCHHhHHHHHHH
Q 041381 130 FLLLLDDIWER---IDLAKVGVPFPAS-SRNASKIVF-TTRL---------VDVCGLMEAQKTFKVECFADQDAWELFLK 195 (307)
Q Consensus 130 ~LlVlDdv~~~---~~~~~l~~~~~~~-~~~gs~Iiv-Ttr~---------~~v~~~~~~~~~~~l~~L~~~e~~~Lf~~ 195 (307)
-+|++||++.. ..|+.....++.. ...|+.+++ |+.. .++...++.+..+++++++.++.++++++
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~ 172 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQR 172 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHH
Confidence 48999999863 3454211110111 123555554 4443 35555556667899999999999999999
Q ss_pred HhCCCCCCCCCChHHHHHHHHHHCCCChHHHHHHH
Q 041381 196 KVGQETLESHPDIPELAQTVAKECSGLPLALITTS 230 (307)
Q Consensus 196 ~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ig 230 (307)
.+....... -.+...-|++.+.|..-++..+-
T Consensus 173 ~a~~~~l~l---~~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 173 NAYQRGIEL---SDEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred HHHHcCCCC---CHHHHHHHHHhccCCHHHHHHHH
Confidence 886443222 24566778888877665554443
No 11
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.21 E-value=0.02 Score=53.68 Aligned_cols=144 Identities=14% Similarity=0.187 Sum_probs=88.8
Q ss_pred CceeeccccHHH---HHHHHhcCCceEEEEEcCchh--------------------------HHHHH---HHh-----cC
Q 041381 85 PTIIGLESTFDK---VWRCLVEGQFGIIGLYGMGGK--------------------------ASGIF---NLL-----SK 127 (307)
Q Consensus 85 ~~~vGr~~~~~~---l~~~L~~~~~~vi~I~G~gGi--------------------------~~~l~---~~l-----~~ 127 (307)
.++||.+..+.. +.+++.......+.++|.+|+ ...++ +.. .+
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~~~~ir~ii~~~~~~~~~g 91 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSGVKDLREVIEEARQRRSAG 91 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccccHHHHHHHHHHHHHhhhcC
Confidence 357888877655 777776667777888999999 11121 111 34
Q ss_pred CeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEEE--ecCChh--hh-hcccccceeecCCCCHHhHHHHHHHHhCCC
Q 041381 128 MKFLLLLDDIWER--IDLAKVGVPFPASSRNASKIVF--TTRLVD--VC-GLMEAQKTFKVECFADQDAWELFLKKVGQE 200 (307)
Q Consensus 128 kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~Iiv--Ttr~~~--v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~ 200 (307)
++.+|++|+++.. ...+.+... +. .|..+++ ||.+.. +. ...+-...+.+.+++.++...++.+.+...
T Consensus 92 ~~~vL~IDEi~~l~~~~q~~LL~~-le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~ 167 (413)
T PRK13342 92 RRTILFIDEIHRFNKAQQDALLPH-VE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDK 167 (413)
T ss_pred CceEEEEechhhhCHHHHHHHHHH-hh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHh
Confidence 7789999999864 334444322 22 2444444 344432 11 112223678999999999999999876432
Q ss_pred CCCCCCChHHHHHHHHHHCCCChHHHHHHHHH
Q 041381 201 TLESHPDIPELAQTVAKECSGLPLALITTSRA 232 (307)
Q Consensus 201 ~~~~~~~l~~~~~~i~~~c~GlPLai~~ig~~ 232 (307)
......-..+..+.|++.|+|.+..+..+...
T Consensus 168 ~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 168 ERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred hcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 10111223566788999999999876555443
No 12
>PF05729 NACHT: NACHT domain
Probab=97.20 E-value=0.00099 Score=53.45 Aligned_cols=72 Identities=18% Similarity=0.236 Sum_probs=49.5
Q ss_pred cCCeEEEEEeCcCCHHH---------HhhcCCCCCCC-CCCCeEEEEecCChhh---hhcccccceeecCCCCHHhHHHH
Q 041381 126 SKMKFLLLLDDIWERID---------LAKVGVPFPAS-SRNASKIVFTTRLVDV---CGLMEAQKTFKVECFADQDAWEL 192 (307)
Q Consensus 126 ~~kr~LlVlDdv~~~~~---------~~~l~~~~~~~-~~~gs~IivTtr~~~v---~~~~~~~~~~~l~~L~~~e~~~L 192 (307)
+.+++++|+|++++... +..+...+++. ..++++++||||.... .........+.+.+|++++..++
T Consensus 79 ~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQY 158 (166)
T ss_pred cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHH
Confidence 46799999999975322 22222111222 3568999999999766 33334456899999999999999
Q ss_pred HHHHh
Q 041381 193 FLKKV 197 (307)
Q Consensus 193 f~~~~ 197 (307)
+.+.+
T Consensus 159 ~~~~f 163 (166)
T PF05729_consen 159 LRKYF 163 (166)
T ss_pred HHHHh
Confidence 98765
No 13
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.20 E-value=0.055 Score=49.63 Aligned_cols=143 Identities=10% Similarity=0.137 Sum_probs=82.5
Q ss_pred CCceeeccccHHHHHHHHhc----CCceEEEEEcCchh------------------------------------------
Q 041381 84 QPTIIGLESTFDKVWRCLVE----GQFGIIGLYGMGGK------------------------------------------ 117 (307)
Q Consensus 84 ~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGi------------------------------------------ 117 (307)
+..++||++++++|...|.. .....+.|+|++|+
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 46789999999999998864 23457889999998
Q ss_pred --HHHH---------------------HHHh--cCCeEEEEEeCcCCHH-----HHhhcCCCCCCCC--CCCeEEEEecC
Q 041381 118 --ASGI---------------------FNLL--SKMKFLLLLDDIWERI-----DLAKVGVPFPASS--RNASKIVFTTR 165 (307)
Q Consensus 118 --~~~l---------------------~~~l--~~kr~LlVlDdv~~~~-----~~~~l~~~~~~~~--~~gs~IivTtr 165 (307)
.+.+ .+.+ .+++++||+|+++... .+..+....-... +....+|.+|.
T Consensus 94 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n 173 (365)
T TIGR02928 94 ELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISN 173 (365)
T ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEEC
Confidence 0111 1111 1346789999997651 1222211100111 12334455554
Q ss_pred Chhhhhccc-------ccceeecCCCCHHhHHHHHHHHhCC--CCCCCCCChHHHHHHHHHHCCCChHHH
Q 041381 166 LVDVCGLME-------AQKTFKVECFADQDAWELFLKKVGQ--ETLESHPDIPELAQTVAKECSGLPLAL 226 (307)
Q Consensus 166 ~~~v~~~~~-------~~~~~~l~~L~~~e~~~Lf~~~~~~--~~~~~~~~l~~~~~~i~~~c~GlPLai 226 (307)
.......+. ....+.+++.+.++-.+++..++.. .....+++..+....++....|.|-.+
T Consensus 174 ~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~a 243 (365)
T TIGR02928 174 DLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKA 243 (365)
T ss_pred CcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHH
Confidence 443211111 1246789999999999999988631 111223344455566777777887443
No 14
>COG3899 Predicted ATPase [General function prediction only]
Probab=96.91 E-value=0.0046 Score=62.92 Aligned_cols=110 Identities=14% Similarity=0.136 Sum_probs=79.8
Q ss_pred ccceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChHHHHHHHHHHcCC------CChhHHHHHHHH
Q 041381 175 AQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALITTSRAMSSK------KRPEERSYAIQM 248 (307)
Q Consensus 175 ~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ig~~L~~~------~~~~~w~~~l~~ 248 (307)
+...+.|.||+..+...+.....+... ....+..+.|+++-.|.|+-+.-+-..|..+ .+...|..-..
T Consensus 210 ~i~~I~L~PL~~~d~~~lV~~~l~~~~----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~- 284 (849)
T COG3899 210 NITTITLAPLSRADTNQLVAATLGCTK----LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIA- 284 (849)
T ss_pred ceeEEecCcCchhhHHHHHHHHhCCcc----cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHH-
Confidence 346899999999999999999987643 3345678999999999999999998888763 34455543111
Q ss_pred HhhccccCCCChhHHHHHHHHhhcCCCCCchhHHHhhhcCCCCCcc
Q 041381 249 LRRSAYEFPGMEKEVFRLLKFSYDSLSSDVLRSCLLYCSLFPEDYQ 294 (307)
Q Consensus 249 l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~a~fp~~~~ 294 (307)
........+ .+...+..-.+.||+ ..|..+-..|++-..+.
T Consensus 285 ---~i~~~~~~~-~vv~~l~~rl~kL~~-~t~~Vl~~AA~iG~~F~ 325 (849)
T COG3899 285 ---SLGILATTD-AVVEFLAARLQKLPG-TTREVLKAAACIGNRFD 325 (849)
T ss_pred ---hcCCchhhH-HHHHHHHHHHhcCCH-HHHHHHHHHHHhCccCC
Confidence 112222223 366678889999999 49988888888865543
No 15
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.73 E-value=0.033 Score=55.28 Aligned_cols=98 Identities=12% Similarity=0.090 Sum_probs=62.5
Q ss_pred CeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEEEecCCh-hhhhc-ccccceeecCCCCHHhHHHHHHHHhCCCCCC
Q 041381 128 MKFLLLLDDIWER--IDLAKVGVPFPASSRNASKIVFTTRLV-DVCGL-MEAQKTFKVECFADQDAWELFLKKVGQETLE 203 (307)
Q Consensus 128 kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IivTtr~~-~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~ 203 (307)
+.-++|+|++... ..++.+... +-......++|+||.+. .+... .+-...+.++.++.++..+.+.+.+..++..
T Consensus 119 r~KVIIIDEah~LT~~A~NALLKt-LEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 119 RFKVYMIDEVHMLTNHAFNAMLKT-LEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred CceEEEEeChhhCCHHHHHHHHHH-HHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 4457889999754 235544332 32224466777766654 33322 2335688999999999999999988655422
Q ss_pred CCCChHHHHHHHHHHCCCCh-HHHHHH
Q 041381 204 SHPDIPELAQTVAKECSGLP-LALITT 229 (307)
Q Consensus 204 ~~~~l~~~~~~i~~~c~GlP-Lai~~i 229 (307)
--.+..+.|++.++|.. -|+..+
T Consensus 198 ---id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 198 ---FEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred ---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 23466788999998865 455543
No 16
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.68 E-value=0.036 Score=49.85 Aligned_cols=92 Identities=8% Similarity=0.026 Sum_probs=59.7
Q ss_pred CeEEEEEeCcC--CHHHHhhcCCCCCCCCCCCeEEEEecCChhhh-hc-ccccceeecCCCCHHhHHHHHHHHhCCCCCC
Q 041381 128 MKFLLLLDDIW--ERIDLAKVGVPFPASSRNASKIVFTTRLVDVC-GL-MEAQKTFKVECFADQDAWELFLKKVGQETLE 203 (307)
Q Consensus 128 kr~LlVlDdv~--~~~~~~~l~~~~~~~~~~gs~IivTtr~~~v~-~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~ 203 (307)
++-++|+|++. +...++.+... +.....++.+|++|.+.+.. .. .+-...+.+.++++++....+.+.....
T Consensus 93 ~~kv~iI~~ad~m~~~a~naLLK~-LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~~~--- 168 (313)
T PRK05564 93 DKKVIIIYNSEKMTEQAQNAFLKT-IEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYNDI--- 168 (313)
T ss_pred CceEEEEechhhcCHHHHHHHHHH-hcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhcCC---
Confidence 44456666654 45556666555 55556788888888665422 22 2335688999999999888776654211
Q ss_pred CCCChHHHHHHHHHHCCCChHHHH
Q 041381 204 SHPDIPELAQTVAKECSGLPLALI 227 (307)
Q Consensus 204 ~~~~l~~~~~~i~~~c~GlPLai~ 227 (307)
-.+.+..++..++|.|.-+.
T Consensus 169 ----~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 169 ----KEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred ----CHHHHHHHHHHcCCCHHHHH
Confidence 13446788999999887554
No 17
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.67 E-value=0.015 Score=49.43 Aligned_cols=136 Identities=12% Similarity=0.095 Sum_probs=77.9
Q ss_pred cccHHHHHHHHhcCCceEEEEEcCchh-----HH--------------------------HHHHHhcCCeEEEEEeCcCC
Q 041381 91 ESTFDKVWRCLVEGQFGIIGLYGMGGK-----AS--------------------------GIFNLLSKMKFLLLLDDIWE 139 (307)
Q Consensus 91 ~~~~~~l~~~L~~~~~~vi~I~G~gGi-----~~--------------------------~l~~~l~~kr~LlVlDdv~~ 139 (307)
+..++.+.+++.......+.|+|..|+ +. .+.+.++ +.-+||+||+..
T Consensus 23 ~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~lLvIDdi~~ 101 (226)
T TIGR03420 23 AELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQADPEVLEGLE-QADLVCLDDVEA 101 (226)
T ss_pred HHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhHHHHHhhcc-cCCEEEEeChhh
Confidence 345666666655555678889999998 11 1111222 223899999975
Q ss_pred HH---HHh-hcCCCCCCC-CCCCeEEEEecCChh---------hhhcccccceeecCCCCHHhHHHHHHHHhCCCCCCCC
Q 041381 140 RI---DLA-KVGVPFPAS-SRNASKIVFTTRLVD---------VCGLMEAQKTFKVECFADQDAWELFLKKVGQETLESH 205 (307)
Q Consensus 140 ~~---~~~-~l~~~~~~~-~~~gs~IivTtr~~~---------v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~ 205 (307)
.. .|. .+... +.. ...+..+|+||+... +...+.....+.+.+++.++-..++...+......
T Consensus 102 l~~~~~~~~~L~~~-l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~-- 178 (226)
T TIGR03420 102 IAGQPEWQEALFHL-YNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQ-- 178 (226)
T ss_pred hcCChHHHHHHHHH-HHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCC--
Confidence 32 222 22111 111 123347888887532 12222224578999999999888887755322211
Q ss_pred CChHHHHHHHHHHCCCChHHHHHHHH
Q 041381 206 PDIPELAQTVAKECSGLPLALITTSR 231 (307)
Q Consensus 206 ~~l~~~~~~i~~~c~GlPLai~~ig~ 231 (307)
--.+..+.|++.+.|.|..+..+..
T Consensus 179 -~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 179 -LPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred -CCHHHHHHHHHhccCCHHHHHHHHH
Confidence 1234557777778888777665543
No 18
>COG3903 Predicted ATPase [General function prediction only]
Probab=96.42 E-value=0.0014 Score=59.72 Aligned_cols=173 Identities=18% Similarity=0.198 Sum_probs=111.0
Q ss_pred HHHHHHHhcCCeEEEEEeCcCCHHH-HhhcCCCCCCCCCCCeEEEEecCChhhhhcccccceeecCCCCHH-hHHHHHHH
Q 041381 118 ASGIFNLLSKMKFLLLLDDIWERID-LAKVGVPFPASSRNASKIVFTTRLVDVCGLMEAQKTFKVECFADQ-DAWELFLK 195 (307)
Q Consensus 118 ~~~l~~~l~~kr~LlVlDdv~~~~~-~~~l~~~~~~~~~~gs~IivTtr~~~v~~~~~~~~~~~l~~L~~~-e~~~Lf~~ 195 (307)
...+.....++|.++|+||-.+..+ -..+..+ +..+...-.|+.|+|..... .......+.+|+.. ++.++|.-
T Consensus 78 ~~~~~~~~~~rr~llvldncehl~~~~a~~i~a-ll~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ 153 (414)
T COG3903 78 VDTLVRRIGDRRALLVLDNCEHLLDACAALIVA-LLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVC 153 (414)
T ss_pred HHHHHHHHhhhhHHHHhcCcHHHHHHHHHHHHH-HHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHH
Confidence 4466777788999999999866422 1111111 22233445688888865432 33456778877766 78899887
Q ss_pred HhCCCC--CCCCCChHHHHHHHHHHCCCChHHHHHHHHHHcCCCChhHHHHHHH----HHhhccccCCCChhHHHHHHHH
Q 041381 196 KVGQET--LESHPDIPELAQTVAKECSGLPLALITTSRAMSSKKRPEERSYAIQ----MLRRSAYEFPGMEKEVFRLLKF 269 (307)
Q Consensus 196 ~~~~~~--~~~~~~l~~~~~~i~~~c~GlPLai~~ig~~L~~~~~~~~w~~~l~----~l~~~~~~~~~~~~~i~~~l~~ 269 (307)
.+.... ..........+..|.++..|.|++|...++..++ ....+-...++ .+..-......-+....+.+.+
T Consensus 154 ra~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~s-l~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~w 232 (414)
T COG3903 154 RAVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRS-LSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDW 232 (414)
T ss_pred HHHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHh-cCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhh
Confidence 763222 1223344667899999999999999999988887 44333322221 1221111111123377889999
Q ss_pred hhcCCCCCchhHHHhhhcCCCCCcccc
Q 041381 270 SYDSLSSDVLRSCLLYCSLFPEDYQIS 296 (307)
Q Consensus 270 sy~~L~~~~~k~cfl~~a~fp~~~~i~ 296 (307)
||.-|.. ..+--|..++.|...+.-.
T Consensus 233 s~~lLtg-we~~~~~rLa~~~g~f~~~ 258 (414)
T COG3903 233 SYALLTG-WERALFGRLAVFVGGFDLG 258 (414)
T ss_pred hhHhhhh-HHHHHhcchhhhhhhhccc
Confidence 9999999 4999999999998876544
No 19
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.37 E-value=0.052 Score=53.98 Aligned_cols=144 Identities=17% Similarity=0.121 Sum_probs=91.9
Q ss_pred CeEEEEEeCcCCH------HHHhhcCCCCCCCCCCCeEEEEecCChhhh---hcccccceeecC----CCCHHhHHHHHH
Q 041381 128 MKFLLLLDDIWER------IDLAKVGVPFPASSRNASKIVFTTRLVDVC---GLMEAQKTFKVE----CFADQDAWELFL 194 (307)
Q Consensus 128 kr~LlVlDdv~~~------~~~~~l~~~~~~~~~~gs~IivTtr~~~v~---~~~~~~~~~~l~----~L~~~e~~~Lf~ 194 (307)
++.++||||..-. ..+..+ +.....+-..|+|||+.--. ..--.+..+++. .++.+|+-++|.
T Consensus 129 ~pl~LVlDDyHli~~~~l~~~l~fL----l~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~ 204 (894)
T COG2909 129 GPLYLVLDDYHLISDPALHEALRFL----LKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLN 204 (894)
T ss_pred CceEEEeccccccCcccHHHHHHHH----HHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHH
Confidence 5789999998532 123333 23345678999999987432 211112233343 589999999998
Q ss_pred HHhCCCCCCCCCChHHHHHHHHHHCCCChHHHHHHHHHHcCCCChhHHHHHHHHHhhccccCCCChhHHHHHHHHhhcCC
Q 041381 195 KKVGQETLESHPDIPELAQTVAKECSGLPLALITTSRAMSSKKRPEERSYAIQMLRRSAYEFPGMEKEVFRLLKFSYDSL 274 (307)
Q Consensus 195 ~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ig~~L~~~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L 274 (307)
...+.. --....+.+.+..+|-+-|+..++=.++++.+.+.--..++-..+..+ --..+=-++.|
T Consensus 205 ~~~~l~------Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG~~~~l~---------dYL~eeVld~L 269 (894)
T COG2909 205 DRGSLP------LDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSGAASHLS---------DYLVEEVLDRL 269 (894)
T ss_pred HcCCCC------CChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccchHHHHH---------HHHHHHHHhcC
Confidence 876432 224567899999999999999999888855555443332221111111 11223356789
Q ss_pred CCCchhHHHhhhcCCCC
Q 041381 275 SSDVLRSCLLYCSLFPE 291 (307)
Q Consensus 275 ~~~~~k~cfl~~a~fp~ 291 (307)
|++ +|..++-||+++.
T Consensus 270 p~~-l~~FLl~~svl~~ 285 (894)
T COG2909 270 PPE-LRDFLLQTSVLSR 285 (894)
T ss_pred CHH-HHHHHHHHHhHHH
Confidence 996 9999999999865
No 20
>PRK04195 replication factor C large subunit; Provisional
Probab=96.19 E-value=0.14 Score=49.04 Aligned_cols=144 Identities=16% Similarity=0.125 Sum_probs=89.9
Q ss_pred CceeeccccHHHHHHHHhcC----CceEEEEEcCchh---------------------------HHHHHHH---------
Q 041381 85 PTIIGLESTFDKVWRCLVEG----QFGIIGLYGMGGK---------------------------ASGIFNL--------- 124 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~~~----~~~vi~I~G~gGi---------------------------~~~l~~~--------- 124 (307)
.+++|.+..++.+.+|+..- ..+.+.|+|..|+ ...+...
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~~i~~~~~~~s 93 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIERVAGEAATSGS 93 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHHHHHHhhccCc
Confidence 45899999999999988642 2678999999998 1122221
Q ss_pred hcC-CeEEEEEeCcCCHH------HHhhcCCCCCCCCCCCeEEEEecCChh-hhh-c-ccccceeecCCCCHHhHHHHHH
Q 041381 125 LSK-MKFLLLLDDIWERI------DLAKVGVPFPASSRNASKIVFTTRLVD-VCG-L-MEAQKTFKVECFADQDAWELFL 194 (307)
Q Consensus 125 l~~-kr~LlVlDdv~~~~------~~~~l~~~~~~~~~~gs~IivTtr~~~-v~~-~-~~~~~~~~l~~L~~~e~~~Lf~ 194 (307)
+.+ ++-+||+|+++... .+..+... +. ..+..||+|+.+.. ... . -.....+.+.+++.++....+.
T Consensus 94 l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~-l~--~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~ 170 (482)
T PRK04195 94 LFGARRKLILLDEVDGIHGNEDRGGARAILEL-IK--KAKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLK 170 (482)
T ss_pred ccCCCCeEEEEecCcccccccchhHHHHHHHH-HH--cCCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHH
Confidence 112 57799999997532 23333222 22 22344666664432 211 1 1234578999999999998888
Q ss_pred HHhCCCCCCCCCChHHHHHHHHHHCCCChHHHHHHHHHHc
Q 041381 195 KKVGQETLESHPDIPELAQTVAKECSGLPLALITTSRAMS 234 (307)
Q Consensus 195 ~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ig~~L~ 234 (307)
+.+...+...+ .+....|++.++|-.-.+......+.
T Consensus 171 ~i~~~egi~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a 207 (482)
T PRK04195 171 RICRKEGIECD---DEALKEIAERSGGDLRSAINDLQAIA 207 (482)
T ss_pred HHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 87754442222 46778899999987666554443343
No 21
>PRK09087 hypothetical protein; Validated
Probab=96.07 E-value=0.096 Score=44.81 Aligned_cols=94 Identities=16% Similarity=0.129 Sum_probs=61.5
Q ss_pred EEEEEeCcCC----HHHHhhcCCCCCCCCCCCeEEEEecCC---------hhhhhcccccceeecCCCCHHhHHHHHHHH
Q 041381 130 FLLLLDDIWE----RIDLAKVGVPFPASSRNASKIVFTTRL---------VDVCGLMEAQKTFKVECFADQDAWELFLKK 196 (307)
Q Consensus 130 ~LlVlDdv~~----~~~~~~l~~~~~~~~~~gs~IivTtr~---------~~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 196 (307)
-+|++||+.. ...+-.+... + ...|..+|+||+. .++...+.....+++++++.++-.+++++.
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~-~--~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINS-V--RQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHH-H--HhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 4788899953 2233333222 1 1336779999874 334444456678999999999999999998
Q ss_pred hCCCCCCCCCChHHHHHHHHHHCCCChHHHHHH
Q 041381 197 VGQETLESHPDIPELAQTVAKECSGLPLALITT 229 (307)
Q Consensus 197 ~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~i 229 (307)
+....... -++...-|++.+.|..-++..+
T Consensus 166 ~~~~~~~l---~~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 166 FADRQLYV---DPHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HHHcCCCC---CHHHHHHHHHHhhhhHHHHHHH
Confidence 85443222 2567778888888877766543
No 22
>PLN03025 replication factor C subunit; Provisional
Probab=96.03 E-value=0.068 Score=48.21 Aligned_cols=138 Identities=14% Similarity=0.146 Sum_probs=83.1
Q ss_pred ceeeccccHHHHHHHHhcCCceEEEEEcCchh--------------------------------HHHHHHHh--------
Q 041381 86 TIIGLESTFDKVWRCLVEGQFGIIGLYGMGGK--------------------------------ASGIFNLL-------- 125 (307)
Q Consensus 86 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGi--------------------------------~~~l~~~l-------- 125 (307)
+++|.++.++.|.+++..++.+-+-++|..|+ .+.+++.+
T Consensus 14 ~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~~i~~~~~~~~ 93 (319)
T PLN03025 14 DIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKV 93 (319)
T ss_pred HhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHHHHHHHHHhccc
Confidence 46788877777777776666555778888887 11222221
Q ss_pred ---cCCeEEEEEeCcCCHH--HHhhcCCCCCCCCCCCeEEEEecCCh-hhhhcc-cccceeecCCCCHHhHHHHHHHHhC
Q 041381 126 ---SKMKFLLLLDDIWERI--DLAKVGVPFPASSRNASKIVFTTRLV-DVCGLM-EAQKTFKVECFADQDAWELFLKKVG 198 (307)
Q Consensus 126 ---~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~gs~IivTtr~~-~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~ 198 (307)
.++.-++|+|+++... ....+... +-.....++++++|... .+...+ .-...+++++++.++-...+...+.
T Consensus 94 ~~~~~~~kviiiDE~d~lt~~aq~aL~~~-lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~ 172 (319)
T PLN03025 94 TLPPGRHKIVILDEADSMTSGAQQALRRT-MEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVE 172 (319)
T ss_pred cCCCCCeEEEEEechhhcCHHHHHHHHHH-HhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHH
Confidence 1345689999997632 22222111 11123456677666442 222211 2235789999999999999988875
Q ss_pred CCCCCCCCChHHHHHHHHHHCCCChHHHH
Q 041381 199 QETLESHPDIPELAQTVAKECSGLPLALI 227 (307)
Q Consensus 199 ~~~~~~~~~l~~~~~~i~~~c~GlPLai~ 227 (307)
..+...+ .+....|++.++|-.-.+.
T Consensus 173 ~egi~i~---~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 173 AEKVPYV---PEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred HcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 5442222 4567888999988764443
No 23
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.03 E-value=0.12 Score=46.28 Aligned_cols=140 Identities=11% Similarity=0.094 Sum_probs=85.5
Q ss_pred CceeeccccHHHHHHHHhcCCceEEEEEcCchh-----H-------------------------------HHHHHHhc--
Q 041381 85 PTIIGLESTFDKVWRCLVEGQFGIIGLYGMGGK-----A-------------------------------SGIFNLLS-- 126 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGi-----~-------------------------------~~l~~~l~-- 126 (307)
.+++|+++.++.+.+++..++.+.+.++|..|. . +.+.+...
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~ 96 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVIRNKIKEFARTA 96 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHHHHHHHHHHhcC
Confidence 357899999999888887776666789999988 1 11111111
Q ss_pred ----CCeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEEEecCCh-hhhhcc-cccceeecCCCCHHhHHHHHHHHhC
Q 041381 127 ----KMKFLLLLDDIWER--IDLAKVGVPFPASSRNASKIVFTTRLV-DVCGLM-EAQKTFKVECFADQDAWELFLKKVG 198 (307)
Q Consensus 127 ----~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IivTtr~~-~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~ 198 (307)
..+-++++|++... .....+... +......+.+|+++... .+.... .....+.+.+++.++....+...+.
T Consensus 97 ~~~~~~~~vviiDe~~~l~~~~~~~L~~~-le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~ 175 (319)
T PRK00440 97 PVGGAPFKIIFLDEADNLTSDAQQALRRT-MEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAE 175 (319)
T ss_pred CCCCCCceEEEEeCcccCCHHHHHHHHHH-HhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHH
Confidence 23458899998643 222233222 22223345677666432 221111 2234688999999999888888775
Q ss_pred CCCCCCCCChHHHHHHHHHHCCCChHHHHH
Q 041381 199 QETLESHPDIPELAQTVAKECSGLPLALIT 228 (307)
Q Consensus 199 ~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ 228 (307)
..+.. --.+....+++.++|.+--+..
T Consensus 176 ~~~~~---i~~~al~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 176 NEGIE---ITDDALEAIYYVSEGDMRKAIN 202 (319)
T ss_pred HcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 44321 1245678889999988765433
No 24
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.91 E-value=1.3 Score=40.80 Aligned_cols=174 Identities=16% Similarity=0.186 Sum_probs=100.6
Q ss_pred HHHHHhcCCceEEEEEcCchh--------------------------HHHHHH--------HhcCCeEEEEEeCcCC--H
Q 041381 97 VWRCLVEGQFGIIGLYGMGGK--------------------------ASGIFN--------LLSKMKFLLLLDDIWE--R 140 (307)
Q Consensus 97 l~~~L~~~~~~vi~I~G~gGi--------------------------~~~l~~--------~l~~kr~LlVlDdv~~--~ 140 (307)
|...+..+.+.-.-.||++|+ .+.+++ ...|++.+|.+|.|.. .
T Consensus 39 lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK 118 (436)
T COG2256 39 LRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNK 118 (436)
T ss_pred HHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcCh
Confidence 334455567888889999999 223322 2347899999999964 3
Q ss_pred HHHhhcCCCCCCCCCCCeEEEE--ecCChhh---hhcccccceeecCCCCHHhHHHHHHHHhCCCCCC---CCCCh-HHH
Q 041381 141 IDLAKVGVPFPASSRNASKIVF--TTRLVDV---CGLMEAQKTFKVECFADQDAWELFLKKVGQETLE---SHPDI-PEL 211 (307)
Q Consensus 141 ~~~~~l~~~~~~~~~~gs~Iiv--Ttr~~~v---~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~---~~~~l-~~~ 211 (307)
.+-+.| +|.-.+|.-|+| ||.|..- ....+-..++.+++|+.++-.+++.+.+-..... ....+ .+.
T Consensus 119 ~QQD~l----Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a 194 (436)
T COG2256 119 AQQDAL----LPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEA 194 (436)
T ss_pred hhhhhh----hhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHH
Confidence 333333 555677887776 5555432 1222445789999999999999999854211101 11222 346
Q ss_pred HHHHHHHCCCChHHHHHHHH---HHcCCC---ChhHHHHHHHHHhhccccCCCC---hhHHHHHHHHhhcCCCCC
Q 041381 212 AQTVAKECSGLPLALITTSR---AMSSKK---RPEERSYAIQMLRRSAYEFPGM---EKEVFRLLKFSYDSLSSD 277 (307)
Q Consensus 212 ~~~i~~~c~GlPLai~~ig~---~L~~~~---~~~~w~~~l~~l~~~~~~~~~~---~~~i~~~l~~sy~~L~~~ 277 (307)
-.-|+..++|---++-.... .+.... ..+..++ .++......+.. .-++..++.-|...=+++
T Consensus 195 ~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~---~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~d 266 (436)
T COG2256 195 LDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEE---ILQRRSARFDKDGDAHYDLISALHKSVRGSDPD 266 (436)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHH---HHhhhhhccCCCcchHHHHHHHHHHhhccCCcC
Confidence 67788889887554333322 222211 2233333 333322222222 226777888888777665
No 25
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.89 E-value=0.14 Score=47.14 Aligned_cols=95 Identities=7% Similarity=-0.016 Sum_probs=58.6
Q ss_pred CeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEEEecCChh-hhhcc-cccceeecCCCCHHhHHHHHHHHhCCCCCC
Q 041381 128 MKFLLLLDDIWER--IDLAKVGVPFPASSRNASKIVFTTRLVD-VCGLM-EAQKTFKVECFADQDAWELFLKKVGQETLE 203 (307)
Q Consensus 128 kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IivTtr~~~-v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~ 203 (307)
..-++|+|++... .....+... +-....++.+|++|.+.+ +...+ +-...+.+.+++.++..+++....+...
T Consensus 141 ~~kVviIDead~m~~~aanaLLK~-LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-- 217 (365)
T PRK07471 141 GWRVVIVDTADEMNANAANALLKV-LEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-- 217 (365)
T ss_pred CCEEEEEechHhcCHHHHHHHHHH-HhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC--
Confidence 4568899998753 223333222 222234566666666553 33222 3356889999999999999988653211
Q ss_pred CCCChHHHHHHHHHHCCCChHHHHHHH
Q 041381 204 SHPDIPELAQTVAKECSGLPLALITTS 230 (307)
Q Consensus 204 ~~~~l~~~~~~i~~~c~GlPLai~~ig 230 (307)
......++..++|.|+.+..+.
T Consensus 218 -----~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 218 -----DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred -----HHHHHHHHHHcCCCHHHHHHHh
Confidence 1222678999999998665543
No 26
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.87 E-value=0.13 Score=46.55 Aligned_cols=141 Identities=13% Similarity=0.077 Sum_probs=85.0
Q ss_pred CceeeccccHHHHHHHHhcCCceEEEEEcCchh-----H----HHH----------------------------------
Q 041381 85 PTIIGLESTFDKVWRCLVEGQFGIIGLYGMGGK-----A----SGI---------------------------------- 121 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGi-----~----~~l---------------------------------- 121 (307)
.+++|++..++.+.+++..+..+.+.++|..|+ + +.+
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 94 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHF 94 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhhh
Confidence 457899988888888887776566778999888 0 000
Q ss_pred ---------------HHHh---------cCCeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEEEecCCh-hhhhcc-
Q 041381 122 ---------------FNLL---------SKMKFLLLLDDIWER--IDLAKVGVPFPASSRNASKIVFTTRLV-DVCGLM- 173 (307)
Q Consensus 122 ---------------~~~l---------~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IivTtr~~-~v~~~~- 173 (307)
++.+ .+.+-+||+||+... .....+... +......+++|+||.+. .+...+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~-le~~~~~~~~Il~~~~~~~~~~~L~ 173 (337)
T PRK12402 95 LGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRI-MEQYSRTCRFIIATRQPSKLIPPIR 173 (337)
T ss_pred hhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHH-HHhccCCCeEEEEeCChhhCchhhc
Confidence 0000 122348999999653 222222221 22223346677776543 222222
Q ss_pred cccceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChHHHHHH
Q 041381 174 EAQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALITT 229 (307)
Q Consensus 174 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~i 229 (307)
+....+.+.+++.++....+...+...+.. --.+....|++.++|.+-.+...
T Consensus 174 sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~---~~~~al~~l~~~~~gdlr~l~~~ 226 (337)
T PRK12402 174 SRCLPLFFRAPTDDELVDVLESIAEAEGVD---YDDDGLELIAYYAGGDLRKAILT 226 (337)
T ss_pred CCceEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 223567889999999998988876544322 22457788888898876555443
No 27
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.76 E-value=0.096 Score=51.31 Aligned_cols=99 Identities=10% Similarity=0.042 Sum_probs=62.7
Q ss_pred CCeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeE-EEEecCChhhhhcc-cccceeecCCCCHHhHHHHHHHHhCCCCC
Q 041381 127 KMKFLLLLDDIWER--IDLAKVGVPFPASSRNASK-IVFTTRLVDVCGLM-EAQKTFKVECFADQDAWELFLKKVGQETL 202 (307)
Q Consensus 127 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~-IivTtr~~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 202 (307)
++.-++|+|++... ..++.+... +-.-..++. |++||....+...+ +-...+.++.++.++..+.+.+.+..++.
T Consensus 123 gr~KViIIDEah~Ls~~AaNALLKT-LEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi 201 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAFNAMLKT-LEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI 201 (700)
T ss_pred CCceEEEEEChHhcCHHHHHHHHHh-hccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC
Confidence 45568999999753 334444333 322233444 55555555554333 33568899999999999999887755431
Q ss_pred CCCCChHHHHHHHHHHCCCChHHHHHH
Q 041381 203 ESHPDIPELAQTVAKECSGLPLALITT 229 (307)
Q Consensus 203 ~~~~~l~~~~~~i~~~c~GlPLai~~i 229 (307)
. ...+..+.|++.++|.|..+..+
T Consensus 202 ~---~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 202 A---HEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred C---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 1 12345688999999999755444
No 28
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.71 E-value=0.18 Score=45.92 Aligned_cols=99 Identities=10% Similarity=0.087 Sum_probs=60.0
Q ss_pred CeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEEEecCChh-hhhcc-cccceeecCCCCHHhHHHHHHHHhCCCCCC
Q 041381 128 MKFLLLLDDIWER--IDLAKVGVPFPASSRNASKIVFTTRLVD-VCGLM-EAQKTFKVECFADQDAWELFLKKVGQETLE 203 (307)
Q Consensus 128 kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IivTtr~~~-v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~ 203 (307)
++-++|+|++... .....+... +......+.+|++|.+.. +...+ .....+.+.+++.++....+...+-..+..
T Consensus 117 ~~~vviidea~~l~~~~~~~Ll~~-le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~ 195 (355)
T TIGR02397 117 KYKVYIIDEVHMLSKSAFNALLKT-LEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK 195 (355)
T ss_pred CceEEEEeChhhcCHHHHHHHHHH-HhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 4458889988643 334444333 333334566666665443 22222 234577889999999888888776433311
Q ss_pred CCCChHHHHHHHHHHCCCChHHHHHHH
Q 041381 204 SHPDIPELAQTVAKECSGLPLALITTS 230 (307)
Q Consensus 204 ~~~~l~~~~~~i~~~c~GlPLai~~ig 230 (307)
. -.+.+..|++.++|.|..+....
T Consensus 196 i---~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 196 I---EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred C---CHHHHHHHHHHcCCChHHHHHHH
Confidence 1 24677888999999887665544
No 29
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.64 E-value=0.14 Score=47.51 Aligned_cols=94 Identities=11% Similarity=0.030 Sum_probs=56.9
Q ss_pred CCeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEEEecCC-hhhhhcc-cccceeecCCCCHHhHHHHHHHHhCCCCC
Q 041381 127 KMKFLLLLDDIWER--IDLAKVGVPFPASSRNASKIVFTTRL-VDVCGLM-EAQKTFKVECFADQDAWELFLKKVGQETL 202 (307)
Q Consensus 127 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IivTtr~-~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 202 (307)
+++-++|+|++... .....+... +-....++.+|++|.+ ..+...+ +-...+.+.+++.++..+.+....+.
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~-LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~--- 191 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKA-VEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV--- 191 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHH-hhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC---
Confidence 34557888999753 222333222 2222344555555554 4444332 33568899999999998888754331
Q ss_pred CCCCChHHHHHHHHHHCCCChHHHHHH
Q 041381 203 ESHPDIPELAQTVAKECSGLPLALITT 229 (307)
Q Consensus 203 ~~~~~l~~~~~~i~~~c~GlPLai~~i 229 (307)
..+.+..++..++|.|..+..+
T Consensus 192 -----~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 192 -----DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred -----CHHHHHHHHHHcCCCHHHHHHH
Confidence 1355788999999999755433
No 30
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.64 E-value=0.37 Score=46.30 Aligned_cols=97 Identities=12% Similarity=0.095 Sum_probs=61.6
Q ss_pred CCeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEEEec-CChhhhhcc-cccceeecCCCCHHhHHHHHHHHhCCCCC
Q 041381 127 KMKFLLLLDDIWER--IDLAKVGVPFPASSRNASKIVFTT-RLVDVCGLM-EAQKTFKVECFADQDAWELFLKKVGQETL 202 (307)
Q Consensus 127 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IivTt-r~~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 202 (307)
+++-++|+|+++.. ..+..+... +......+.+|++| ....+...+ .....+.+.+++.++....+.+.+...+.
T Consensus 115 ~~~kVVIIDEad~ls~~a~naLLk~-LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi 193 (504)
T PRK14963 115 GGRKVYILDEAHMMSKSAFNALLKT-LEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGR 193 (504)
T ss_pred CCCeEEEEECccccCHHHHHHHHHH-HHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 45668999999753 345555443 33333445555544 444443322 23458899999999999999987754431
Q ss_pred CCCCChHHHHHHHHHHCCCChHHHH
Q 041381 203 ESHPDIPELAQTVAKECSGLPLALI 227 (307)
Q Consensus 203 ~~~~~l~~~~~~i~~~c~GlPLai~ 227 (307)
.. -.+....|++.++|.+--+.
T Consensus 194 ~i---~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 194 EA---EPEALQLVARLADGAMRDAE 215 (504)
T ss_pred CC---CHHHHHHHHHHcCCCHHHHH
Confidence 11 24567889999999886543
No 31
>PF13173 AAA_14: AAA domain
Probab=95.63 E-value=0.018 Score=44.52 Aligned_cols=68 Identities=12% Similarity=0.040 Sum_probs=47.1
Q ss_pred HHHHhcCCeEEEEEeCcCCHHHHhhcCCCCCCCCCCCeEEEEecCChhhhhc------ccccceeecCCCCHHhH
Q 041381 121 IFNLLSKMKFLLLLDDIWERIDLAKVGVPFPASSRNASKIVFTTRLVDVCGL------MEAQKTFKVECFADQDA 189 (307)
Q Consensus 121 l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IivTtr~~~v~~~------~~~~~~~~l~~L~~~e~ 189 (307)
+.+....+..+|++|++....+|...... +.+..+..+|++|+.+...... .+-...+++.||+..|.
T Consensus 54 ~~~~~~~~~~~i~iDEiq~~~~~~~~lk~-l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 54 FLELIKPGKKYIFIDEIQYLPDWEDALKF-LVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred HHHhhccCCcEEEEehhhhhccHHHHHHH-HHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 33333346788999999988888776555 4444567899999988766422 12334678999998773
No 32
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.60 E-value=0.11 Score=51.93 Aligned_cols=134 Identities=16% Similarity=0.249 Sum_probs=78.5
Q ss_pred ceeeccccHH---HHHHHHhcCCceEEEEEcCchh--------------------------HHHHH-------HHh--cC
Q 041381 86 TIIGLESTFD---KVWRCLVEGQFGIIGLYGMGGK--------------------------ASGIF-------NLL--SK 127 (307)
Q Consensus 86 ~~vGr~~~~~---~l~~~L~~~~~~vi~I~G~gGi--------------------------~~~l~-------~~l--~~ 127 (307)
+++|.+..+. .+.+.+..++..-+.++|++|+ .+.++ +.+ .+
T Consensus 29 d~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~i~dir~~i~~a~~~l~~~~ 108 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAGVKDLRAEVDRAKERLERHG 108 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhhhHHHHHHHHHHHHHhhhcC
Confidence 5789888774 4556666667777889999999 11111 111 13
Q ss_pred CeEEEEEeCcCC--HHHHhhcCCCCCCCCCCCeEEEEe--cCChh--hhh-cccccceeecCCCCHHhHHHHHHHHhCCC
Q 041381 128 MKFLLLLDDIWE--RIDLAKVGVPFPASSRNASKIVFT--TRLVD--VCG-LMEAQKTFKVECFADQDAWELFLKKVGQE 200 (307)
Q Consensus 128 kr~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~IivT--tr~~~--v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~ 200 (307)
++.++++||++. ....+.+... + ..|+.++++ |.+.. +.. ..+-...+.+++|+.++...++.+.+...
T Consensus 109 ~~~IL~IDEIh~Ln~~qQdaLL~~-l---E~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~ 184 (725)
T PRK13341 109 KRTILFIDEVHRFNKAQQDALLPW-V---ENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDK 184 (725)
T ss_pred CceEEEEeChhhCCHHHHHHHHHH-h---cCceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHH
Confidence 567899999974 3444444332 2 235555553 44321 111 11224578999999999999998876410
Q ss_pred C----CCCCCChHHHHHHHHHHCCCCh
Q 041381 201 T----LESHPDIPELAQTVAKECSGLP 223 (307)
Q Consensus 201 ~----~~~~~~l~~~~~~i~~~c~GlP 223 (307)
. .....--.+....|++.+.|..
T Consensus 185 ~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 185 ERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred HhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 0 0001112445677777887753
No 33
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.56 E-value=0.2 Score=48.00 Aligned_cols=97 Identities=10% Similarity=0.123 Sum_probs=62.7
Q ss_pred CCeEEEEEeCcCC--HHHHhhcCCCCCCCCCCCeEEE-EecCChhhhhcc-cccceeecCCCCHHhHHHHHHHHhCCCCC
Q 041381 127 KMKFLLLLDDIWE--RIDLAKVGVPFPASSRNASKIV-FTTRLVDVCGLM-EAQKTFKVECFADQDAWELFLKKVGQETL 202 (307)
Q Consensus 127 ~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~Ii-vTtr~~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 202 (307)
+++-++|+|+++. ...+..+... +......+.+| .||+...+...+ .....+.+.+++.++....+.+.+...+.
T Consensus 127 ~~~KVvIIDEa~~Ls~~a~naLLk~-LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi 205 (507)
T PRK06645 127 GKHKIFIIDEVHMLSKGAFNALLKT-LEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL 205 (507)
T ss_pred CCcEEEEEEChhhcCHHHHHHHHHH-HhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4567899999986 3446555443 33334455555 455555554433 23457899999999999999988865441
Q ss_pred CCCCChHHHHHHHHHHCCCChHHHH
Q 041381 203 ESHPDIPELAQTVAKECSGLPLALI 227 (307)
Q Consensus 203 ~~~~~l~~~~~~i~~~c~GlPLai~ 227 (307)
. --.+....|++.++|.+--+.
T Consensus 206 ~---ie~eAL~~Ia~~s~GslR~al 227 (507)
T PRK06645 206 K---TDIEALRIIAYKSEGSARDAV 227 (507)
T ss_pred C---CCHHHHHHHHHHcCCCHHHHH
Confidence 1 123456779999999775443
No 34
>PRK08727 hypothetical protein; Validated
Probab=95.56 E-value=0.17 Score=43.40 Aligned_cols=94 Identities=11% Similarity=0.052 Sum_probs=56.7
Q ss_pred EEEEEeCcCCH---HHHhhcCCCCCCC-CCCCeEEEEecCCh---------hhhhcccccceeecCCCCHHhHHHHHHHH
Q 041381 130 FLLLLDDIWER---IDLAKVGVPFPAS-SRNASKIVFTTRLV---------DVCGLMEAQKTFKVECFADQDAWELFLKK 196 (307)
Q Consensus 130 ~LlVlDdv~~~---~~~~~l~~~~~~~-~~~gs~IivTtr~~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 196 (307)
-+||+||+... ..|......++.. ..+|..+|+||+.. ++...+.....+++++++.++-.+++.+.
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 58999999642 2232211110111 12456799999853 22222334568899999999999999987
Q ss_pred hCCCCCCCCCChHHHHHHHHHHCCCChHHH
Q 041381 197 VGQETLESHPDIPELAQTVAKECSGLPLAL 226 (307)
Q Consensus 197 ~~~~~~~~~~~l~~~~~~i~~~c~GlPLai 226 (307)
+....... -.+...-|++.++|..-.+
T Consensus 175 a~~~~l~l---~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 175 AQRRGLAL---DEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHcCCCC---CHHHHHHHHHhCCCCHHHH
Confidence 64433222 2456677888887665554
No 35
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.30 E-value=0.33 Score=44.61 Aligned_cols=98 Identities=10% Similarity=0.091 Sum_probs=60.4
Q ss_pred CeEEEEEeCcCCHH--HHhhcCCCCCCCCCCCeEEEEecCCh-hhhhcc-cccceeecCCCCHHhHHHHHHHHhCCCCCC
Q 041381 128 MKFLLLLDDIWERI--DLAKVGVPFPASSRNASKIVFTTRLV-DVCGLM-EAQKTFKVECFADQDAWELFLKKVGQETLE 203 (307)
Q Consensus 128 kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~gs~IivTtr~~-~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~ 203 (307)
++-++|+|++.... .++.+... +.......++|++|.+. .+...+ +-...+++.+++.++..+.+...+...+.
T Consensus 119 ~~kviIIDEa~~l~~~a~naLLk~-lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~- 196 (363)
T PRK14961 119 RFKVYLIDEVHMLSRHSFNALLKT-LEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI- 196 (363)
T ss_pred CceEEEEEChhhcCHHHHHHHHHH-HhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC-
Confidence 45589999997643 34444333 33334456677666543 333222 22467899999999998888876643321
Q ss_pred CCCChHHHHHHHHHHCCCChHHHHHH
Q 041381 204 SHPDIPELAQTVAKECSGLPLALITT 229 (307)
Q Consensus 204 ~~~~l~~~~~~i~~~c~GlPLai~~i 229 (307)
.--.+.+..|++.++|.|-.+...
T Consensus 197 --~i~~~al~~ia~~s~G~~R~al~~ 220 (363)
T PRK14961 197 --DTDEYALKLIAYHAHGSMRDALNL 220 (363)
T ss_pred --CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 112456778999999988644333
No 36
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.29 E-value=0.12 Score=50.94 Aligned_cols=99 Identities=10% Similarity=0.076 Sum_probs=59.2
Q ss_pred CCeEEEEEeCcCCHH--HHhhcCCCCCCCCCCCeEEEEecCC-hhhhhc-ccccceeecCCCCHHhHHHHHHHHhCCCCC
Q 041381 127 KMKFLLLLDDIWERI--DLAKVGVPFPASSRNASKIVFTTRL-VDVCGL-MEAQKTFKVECFADQDAWELFLKKVGQETL 202 (307)
Q Consensus 127 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~gs~IivTtr~-~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 202 (307)
+++-++|+|++.... ....+... +-.....+++|++|.+ ..+... .+-...+.+.+++.++....+.+.+...+.
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKt-LEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi 196 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKT-LEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI 196 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHH-HHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC
Confidence 456689999997532 23223222 2222234556666544 333222 233456788899999999999887755442
Q ss_pred CCCCChHHHHHHHHHHCCCChHHHHHH
Q 041381 203 ESHPDIPELAQTVAKECSGLPLALITT 229 (307)
Q Consensus 203 ~~~~~l~~~~~~i~~~c~GlPLai~~i 229 (307)
. --.+....|++.++|.+--+..+
T Consensus 197 ~---id~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 197 A---YEPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred C---cCHHHHHHHHHHhCCCHHHHHHH
Confidence 1 22456789999999988554443
No 37
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.28 E-value=0.22 Score=49.00 Aligned_cols=139 Identities=12% Similarity=0.109 Sum_probs=85.9
Q ss_pred ceeeccccHHHHHHHHhcCC-ceEEEEEcCchh-----------------------------------------------
Q 041381 86 TIIGLESTFDKVWRCLVEGQ-FGIIGLYGMGGK----------------------------------------------- 117 (307)
Q Consensus 86 ~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGi----------------------------------------------- 117 (307)
++||.+..++.|.+++..+. ...+.++|..|+
T Consensus 16 dVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAA 95 (702)
T PRK14960 16 ELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAA 95 (702)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEeccc
Confidence 56788877777777777664 346677777777
Q ss_pred ----HHHHHHHh--------cCCeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEEEecCCh-hhh-hcccccceeec
Q 041381 118 ----ASGIFNLL--------SKMKFLLLLDDIWER--IDLAKVGVPFPASSRNASKIVFTTRLV-DVC-GLMEAQKTFKV 181 (307)
Q Consensus 118 ----~~~l~~~l--------~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IivTtr~~-~v~-~~~~~~~~~~l 181 (307)
.+.+++.+ .++.-++|+|++... .....+... +-....+.++|++|.+. .+. ...+....+++
T Consensus 96 s~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKt-LEEPP~~v~FILaTtd~~kIp~TIlSRCq~feF 174 (702)
T PRK14960 96 SRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKT-LEEPPEHVKFLFATTDPQKLPITVISRCLQFTL 174 (702)
T ss_pred ccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHH-HhcCCCCcEEEEEECChHhhhHHHHHhhheeec
Confidence 12222222 245568899999753 333333322 22223455677666553 232 22234568899
Q ss_pred CCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChHHHHH
Q 041381 182 ECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALIT 228 (307)
Q Consensus 182 ~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ 228 (307)
.+++.++....+.+.+...+. .--.+....|++.++|.+-.+..
T Consensus 175 kpLs~eEI~k~L~~Il~kEgI---~id~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 175 RPLAVDEITKHLGAILEKEQI---AADQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred cCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 999999999999887755432 12245667889999997754443
No 38
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=95.17 E-value=0.12 Score=47.58 Aligned_cols=134 Identities=18% Similarity=0.179 Sum_probs=80.4
Q ss_pred CceeeccccHHHHHHHHhcC-------------CceEEEEEcCchh---------------------------------H
Q 041381 85 PTIIGLESTFDKVWRCLVEG-------------QFGIIGLYGMGGK---------------------------------A 118 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~~~-------------~~~vi~I~G~gGi---------------------------------~ 118 (307)
.++.|+++.+++|.+.+... ..+-+.++|.+|+ .
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~ 201 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGA 201 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHH
Confidence 35789999999998876421 2445889999998 1
Q ss_pred HHHHHHh----cCCeEEEEEeCcCCHH----------------HHhhcCCCCCC--CCCCCeEEEEecCChhhhh-----
Q 041381 119 SGIFNLL----SKMKFLLLLDDIWERI----------------DLAKVGVPFPA--SSRNASKIVFTTRLVDVCG----- 171 (307)
Q Consensus 119 ~~l~~~l----~~kr~LlVlDdv~~~~----------------~~~~l~~~~~~--~~~~gs~IivTtr~~~v~~----- 171 (307)
..++..+ .....+|++|+++... .+..+... +. ....+..||.||...+...
T Consensus 202 ~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~-ld~~~~~~~v~vI~ttn~~~~ld~al~r 280 (364)
T TIGR01242 202 RLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAE-LDGFDPRGNVKVIAATNRPDILDPALLR 280 (364)
T ss_pred HHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHH-hhCCCCCCCEEEEEecCChhhCChhhcC
Confidence 1122222 2245799999986421 12222111 11 1234677888887543221
Q ss_pred cccccceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCCh
Q 041381 172 LMEAQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLP 223 (307)
Q Consensus 172 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 223 (307)
.......+.+...+.++..++|..++.........+ ...+++.+.|..
T Consensus 281 ~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 281 PGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred cccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 112245788999999999999998875443222222 356777777764
No 39
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.97 E-value=0.18 Score=44.53 Aligned_cols=140 Identities=15% Similarity=0.149 Sum_probs=91.1
Q ss_pred CceeeccccHHHHHHHHhcCCceEEEEEcCchh---------------------------------HHHHHHHhc-----
Q 041381 85 PTIIGLESTFDKVWRCLVEGQFGIIGLYGMGGK---------------------------------ASGIFNLLS----- 126 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGi---------------------------------~~~l~~~l~----- 126 (307)
.+++|-+..++.+.+.+.....+....+|++|. ...+++..+
T Consensus 36 de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~fakl 115 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKNFAKL 115 (346)
T ss_pred HhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcCHHHH
Confidence 357899999999999998877899999999998 111111111
Q ss_pred -----------CCe-EEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEE-EEecCChhhhhcc-cccceeecCCCCHHhHH
Q 041381 127 -----------KMK-FLLLLDDIWER--IDLAKVGVPFPASSRNASKI-VFTTRLVDVCGLM-EAQKTFKVECFADQDAW 190 (307)
Q Consensus 127 -----------~kr-~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~I-ivTtr~~~v~~~~-~~~~~~~l~~L~~~e~~ 190 (307)
.+. -.+|||+.+.. +.|..+... +-.....++. +||+--..+-..+ .-...+..++|.+++..
T Consensus 116 ~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~-mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv 194 (346)
T KOG0989|consen 116 TVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRT-MEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIV 194 (346)
T ss_pred hhccccccCCCCCcceEEEEechhhhhHHHHHHHHHH-HhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHH
Confidence 022 36789999864 568877554 4343444554 4555444333222 22457889999999999
Q ss_pred HHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChHHHHH
Q 041381 191 ELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALIT 228 (307)
Q Consensus 191 ~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ 228 (307)
.-++..+-.++...+ .+..+.|++.++|.---+.+
T Consensus 195 ~rL~~Ia~~E~v~~d---~~al~~I~~~S~GdLR~Ait 229 (346)
T KOG0989|consen 195 DRLEKIASKEGVDID---DDALKLIAKISDGDLRRAIT 229 (346)
T ss_pred HHHHHHHHHhCCCCC---HHHHHHHHHHcCCcHHHHHH
Confidence 888888865553222 45678899999886443333
No 40
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=94.89 E-value=0.47 Score=46.80 Aligned_cols=53 Identities=9% Similarity=0.004 Sum_probs=34.7
Q ss_pred ceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChHHHHHHHHH
Q 041381 177 KTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALITTSRA 232 (307)
Q Consensus 177 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ig~~ 232 (307)
..+.+.+++.++.+.++.+.+....... -.+....|.+.+..-+-|+..++..
T Consensus 346 ~~i~~~pls~edi~~Il~~~a~~~~v~l---s~eal~~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 346 AEVFFEPLTPEDIALIVLNAAEKINVHL---AAGVEELIARYTIEGRKAVNILADV 398 (615)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 4678899999999999999876433111 1345555666565556677666544
No 41
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.78 E-value=0.41 Score=41.15 Aligned_cols=96 Identities=11% Similarity=0.105 Sum_probs=56.8
Q ss_pred EEEEeCcCCH---HHHhhcCCCCCCC-CCCC-eEEEEecCCh---------hhhhcccccceeecCCCCHHhHHHHHHHH
Q 041381 131 LLLLDDIWER---IDLAKVGVPFPAS-SRNA-SKIVFTTRLV---------DVCGLMEAQKTFKVECFADQDAWELFLKK 196 (307)
Q Consensus 131 LlVlDdv~~~---~~~~~l~~~~~~~-~~~g-s~IivTtr~~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 196 (307)
++++||+... ..|+......+.. -..| .++|+||+.. ++...+....++.+++++.++-.+++.+.
T Consensus 100 lliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~ 179 (235)
T PRK08084 100 LVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLR 179 (235)
T ss_pred EEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHH
Confidence 7899999642 3343221110111 1123 4799999754 22333455678999999999999998876
Q ss_pred hCCCCCCCCCChHHHHHHHHHHCCCChHHHHHH
Q 041381 197 VGQETLESHPDIPELAQTVAKECSGLPLALITT 229 (307)
Q Consensus 197 ~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~i 229 (307)
+...... --++...-|++.+.|..-++..+
T Consensus 180 a~~~~~~---l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 180 ARLRGFE---LPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HHHcCCC---CCHHHHHHHHHhhcCCHHHHHHH
Confidence 6433211 22456677777777665544433
No 42
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.71 E-value=0.45 Score=43.72 Aligned_cols=95 Identities=8% Similarity=0.060 Sum_probs=55.2
Q ss_pred CCeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEEEec-CChhhhhc-ccccceeecCCCCHHhHHHHHHHHhCCCCC
Q 041381 127 KMKFLLLLDDIWER--IDLAKVGVPFPASSRNASKIVFTT-RLVDVCGL-MEAQKTFKVECFADQDAWELFLKKVGQETL 202 (307)
Q Consensus 127 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IivTt-r~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 202 (307)
+++-++++|++... ..+..+... +......+.+|++| ....+... .+....++.+++++++....+...+...+.
T Consensus 107 ~~~kiviIDE~~~l~~~~~~~ll~~-le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~ 185 (367)
T PRK14970 107 GKYKIYIIDEVHMLSSAAFNAFLKT-LEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGI 185 (367)
T ss_pred CCcEEEEEeChhhcCHHHHHHHHHH-HhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCC
Confidence 34558999998643 234444322 22223345555544 33333322 233457899999999988888887644331
Q ss_pred CCCCChHHHHHHHHHHCCCChHH
Q 041381 203 ESHPDIPELAQTVAKECSGLPLA 225 (307)
Q Consensus 203 ~~~~~l~~~~~~i~~~c~GlPLa 225 (307)
.. -.+....|+..++|.+-.
T Consensus 186 ~i---~~~al~~l~~~~~gdlr~ 205 (367)
T PRK14970 186 KF---EDDALHIIAQKADGALRD 205 (367)
T ss_pred CC---CHHHHHHHHHhCCCCHHH
Confidence 11 245677888888886553
No 43
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=94.58 E-value=0.59 Score=38.49 Aligned_cols=89 Identities=9% Similarity=0.107 Sum_probs=56.7
Q ss_pred CCeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEEEecCCh-hhhhcc-cccceeecCCCCHHhHHHHHHHHhCCCCC
Q 041381 127 KMKFLLLLDDIWER--IDLAKVGVPFPASSRNASKIVFTTRLV-DVCGLM-EAQKTFKVECFADQDAWELFLKKVGQETL 202 (307)
Q Consensus 127 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IivTtr~~-~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 202 (307)
+.+-++|+|++... ...+.+... +......+.+|++|++. .+...+ .....+.+.+++.++..+.+.+. |
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~-le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~-g---- 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKT-LEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ-G---- 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHH-hcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc-C----
Confidence 45668999998653 234444333 33334456666666543 332222 23458899999999988888776 2
Q ss_pred CCCCChHHHHHHHHHHCCCChHH
Q 041381 203 ESHPDIPELAQTVAKECSGLPLA 225 (307)
Q Consensus 203 ~~~~~l~~~~~~i~~~c~GlPLa 225 (307)
.+ .+.+..|++.++|.|..
T Consensus 169 -i~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 169 -IS---EEAAELLLALAGGSPGA 187 (188)
T ss_pred -CC---HHHHHHHHHHcCCCccc
Confidence 11 46688999999998853
No 44
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.40 E-value=0.55 Score=44.88 Aligned_cols=99 Identities=11% Similarity=0.107 Sum_probs=60.6
Q ss_pred CCeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEEEec-CChhhhhcc-cccceeecCCCCHHhHHHHHHHHhCCCCC
Q 041381 127 KMKFLLLLDDIWER--IDLAKVGVPFPASSRNASKIVFTT-RLVDVCGLM-EAQKTFKVECFADQDAWELFLKKVGQETL 202 (307)
Q Consensus 127 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IivTt-r~~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 202 (307)
++.-++|+|++... ...+.+... +-.....+++|++| ....+...+ .....+.+.+++.++....+.+.+...+.
T Consensus 115 ~~~KVvIIDEah~Ls~~A~NaLLK~-LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi 193 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAFNALLKT-LEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI 193 (491)
T ss_pred CCceEEEEeChHhCCHHHHHHHHHH-HhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC
Confidence 35568999998642 233333322 32223456555555 444444332 33567899999999999999888765442
Q ss_pred CCCCChHHHHHHHHHHCCCChHHHHHH
Q 041381 203 ESHPDIPELAQTVAKECSGLPLALITT 229 (307)
Q Consensus 203 ~~~~~l~~~~~~i~~~c~GlPLai~~i 229 (307)
. --.+....|++.++|.+-.+...
T Consensus 194 ~---i~~eAL~lIa~~s~GslR~alsl 217 (491)
T PRK14964 194 E---HDEESLKLIAENSSGSMRNALFL 217 (491)
T ss_pred C---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 1 12455678899999887644333
No 45
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.33 E-value=0.65 Score=45.68 Aligned_cols=98 Identities=12% Similarity=0.114 Sum_probs=60.6
Q ss_pred CeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEEEec-CChhhhhc-ccccceeecCCCCHHhHHHHHHHHhCCCCCC
Q 041381 128 MKFLLLLDDIWER--IDLAKVGVPFPASSRNASKIVFTT-RLVDVCGL-MEAQKTFKVECFADQDAWELFLKKVGQETLE 203 (307)
Q Consensus 128 kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IivTt-r~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~ 203 (307)
+.-++|+|+++.. ..++.+... +-.....+++|++| ....+... ..-...+.+++++.++....+.+.+...+..
T Consensus 124 ~~KV~IIDEvh~Ls~~a~NaLLKt-LEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ 202 (618)
T PRK14951 124 RFKVFMIDEVHMLTNTAFNAMLKT-LEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP 202 (618)
T ss_pred CceEEEEEChhhCCHHHHHHHHHh-cccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 3458899999753 344444433 33323445555544 44444322 2335688999999999999998877554421
Q ss_pred CCCChHHHHHHHHHHCCCChHHHHHH
Q 041381 204 SHPDIPELAQTVAKECSGLPLALITT 229 (307)
Q Consensus 204 ~~~~l~~~~~~i~~~c~GlPLai~~i 229 (307)
--.+....|++.++|.+--+..+
T Consensus 203 ---ie~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 203 ---AEPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred ---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 12456788889999877554443
No 46
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.32 E-value=0.57 Score=47.71 Aligned_cols=97 Identities=11% Similarity=0.071 Sum_probs=58.0
Q ss_pred CCeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEE-EecCChhhhhcc-cccceeecCCCCHHhHHHHHHHHhCCCCC
Q 041381 127 KMKFLLLLDDIWER--IDLAKVGVPFPASSRNASKIV-FTTRLVDVCGLM-EAQKTFKVECFADQDAWELFLKKVGQETL 202 (307)
Q Consensus 127 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~Ii-vTtr~~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 202 (307)
++.-++|+|++... ...+.|... +..-...+.+| +||....+...+ .-.+.|.+..++.++-...+.+.+...+.
T Consensus 119 ~~~KV~IIDEad~lt~~a~NaLLK~-LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv 197 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFNALLKI-VEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV 197 (824)
T ss_pred CCceEEEEechhhcCHHHHHHHHHH-HhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 45557889999753 333333322 32223345555 454444454333 33568899999999988888877644331
Q ss_pred CCCCChHHHHHHHHHHCCCChHHHH
Q 041381 203 ESHPDIPELAQTVAKECSGLPLALI 227 (307)
Q Consensus 203 ~~~~~l~~~~~~i~~~c~GlPLai~ 227 (307)
. --.+....|++.++|.+..+.
T Consensus 198 ~---id~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 198 P---VEPGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred C---CCHHHHHHHHHHcCCCHHHHH
Confidence 1 123455788999999884443
No 47
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.25 E-value=1.7 Score=42.74 Aligned_cols=103 Identities=10% Similarity=0.088 Sum_probs=63.3
Q ss_pred CCeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEEEecCC-hhhhhcc-cccceeecCCCCHHhHHHHHHHHhCCCCC
Q 041381 127 KMKFLLLLDDIWER--IDLAKVGVPFPASSRNASKIVFTTRL-VDVCGLM-EAQKTFKVECFADQDAWELFLKKVGQETL 202 (307)
Q Consensus 127 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IivTtr~-~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 202 (307)
+++-++|+|++... ...+.|... +........+|++|.+ ..+...+ .-...+++++++.++....+...+.....
T Consensus 118 g~~kVIIIDEad~Lt~~a~naLLk~-LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi 196 (624)
T PRK14959 118 GRYKVFIIDEAHMLTREAFNALLKT-LEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV 196 (624)
T ss_pred CCceEEEEEChHhCCHHHHHHHHHH-hhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC
Confidence 45668999999753 334444333 3222234555555544 4443222 23457899999999999888887654331
Q ss_pred CCCCChHHHHHHHHHHCCCCh-HHHHHHHHHH
Q 041381 203 ESHPDIPELAQTVAKECSGLP-LALITTSRAM 233 (307)
Q Consensus 203 ~~~~~l~~~~~~i~~~c~GlP-Lai~~ig~~L 233 (307)
. --.+.+..|++.++|.+ .|+..+..++
T Consensus 197 ~---id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 197 D---YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred C---CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1 22456788999999954 6777776554
No 48
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=94.11 E-value=1.4 Score=40.26 Aligned_cols=98 Identities=5% Similarity=-0.028 Sum_probs=57.8
Q ss_pred CCeEEEEEeCcCCHH--HHhhcCCCCCCCCCCCe-EEEEecCChhhhhcc-cccceeecCCCCHHhHHHHHHHHhCCCCC
Q 041381 127 KMKFLLLLDDIWERI--DLAKVGVPFPASSRNAS-KIVFTTRLVDVCGLM-EAQKTFKVECFADQDAWELFLKKVGQETL 202 (307)
Q Consensus 127 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~gs-~IivTtr~~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 202 (307)
+++-++|+|++.... ..+.+... +-....++ -|++|++-..+...+ +-...+++.+++.++..+.+.... ...
T Consensus 140 g~~rVviIDeAd~l~~~aanaLLk~-LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~-~~~- 216 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNAANAILKT-LEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLG-SSQ- 216 (351)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHH-HhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhh-ccc-
Confidence 355688899987532 22222211 11112233 455555444443322 234689999999999999998743 211
Q ss_pred CCCCChHHHHHHHHHHCCCChHHHHHHH
Q 041381 203 ESHPDIPELAQTVAKECSGLPLALITTS 230 (307)
Q Consensus 203 ~~~~~l~~~~~~i~~~c~GlPLai~~ig 230 (307)
. -..+....|++.++|.|..+..+.
T Consensus 217 --~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 217 --G-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred --C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 124456789999999998765544
No 49
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.06 E-value=0.17 Score=38.90 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=20.8
Q ss_pred eccccHHHHHHHHhcCCceEEEEEcCchh
Q 041381 89 GLESTFDKVWRCLVEGQFGIIGLYGMGGK 117 (307)
Q Consensus 89 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGi 117 (307)
|++..++.+...+.......+.|+|.+|+
T Consensus 2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~ 30 (151)
T cd00009 2 GQEEAIEALREALELPPPKNLLLYGPPGT 30 (151)
T ss_pred chHHHHHHHHHHHhCCCCCeEEEECCCCC
Confidence 56677777777776655567778888887
No 50
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.89 E-value=0.98 Score=42.93 Aligned_cols=99 Identities=10% Similarity=-0.015 Sum_probs=61.5
Q ss_pred CCeEEEEEeCcCC--HHHHhhcCCCCCCCCCCCeEEE-EecCChhhhhcc-cccceeecCCCCHHhHHHHHHHHhCCCCC
Q 041381 127 KMKFLLLLDDIWE--RIDLAKVGVPFPASSRNASKIV-FTTRLVDVCGLM-EAQKTFKVECFADQDAWELFLKKVGQETL 202 (307)
Q Consensus 127 ~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~Ii-vTtr~~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 202 (307)
++.-++|+|++.. ...++.+... +-.......+| .||....+...+ .-...|.+.+++.++-.+.+.+.+...+.
T Consensus 120 g~~KV~IIDEah~Ls~~A~NALLKt-LEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi 198 (484)
T PRK14956 120 GKYKVYIIDEVHMLTDQSFNALLKT-LEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV 198 (484)
T ss_pred CCCEEEEEechhhcCHHHHHHHHHH-hhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC
Confidence 4556899999975 3445555433 32222344444 555545554333 33467999999999988888887654431
Q ss_pred CCCCChHHHHHHHHHHCCCChHHHHHH
Q 041381 203 ESHPDIPELAQTVAKECSGLPLALITT 229 (307)
Q Consensus 203 ~~~~~l~~~~~~i~~~c~GlPLai~~i 229 (307)
.--.+....|++.++|.+--+..+
T Consensus 199 ---~~e~eAL~~Ia~~S~Gd~RdAL~l 222 (484)
T PRK14956 199 ---QYDQEGLFWIAKKGDGSVRDMLSF 222 (484)
T ss_pred ---CCCHHHHHHHHHHcCChHHHHHHH
Confidence 122456788999999988544333
No 51
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=93.84 E-value=0.63 Score=45.44 Aligned_cols=100 Identities=10% Similarity=0.091 Sum_probs=58.3
Q ss_pred CeEEEEEeCcCC--HHHHhhcCCCCCCCCCCCeEEEE-ecCChhhhhc-ccccceeecCCCCHHhHHHHHHHHhCCCCCC
Q 041381 128 MKFLLLLDDIWE--RIDLAKVGVPFPASSRNASKIVF-TTRLVDVCGL-MEAQKTFKVECFADQDAWELFLKKVGQETLE 203 (307)
Q Consensus 128 kr~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~Iiv-Ttr~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~ 203 (307)
++-++|+|++.. ...+..+... +-.....+.+|+ |+....+... ......+.+.+++.++....+...+...+..
T Consensus 119 ~~KVIIIDEad~Lt~~A~NaLLKt-LEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~ 197 (605)
T PRK05896 119 KYKVYIIDEAHMLSTSAWNALLKT-LEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIK 197 (605)
T ss_pred CcEEEEEechHhCCHHHHHHHHHH-HHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCC
Confidence 344699999865 2334444332 222233455554 4444444322 2335688999999999998888876443311
Q ss_pred CCCChHHHHHHHHHHCCCChH-HHHHHHH
Q 041381 204 SHPDIPELAQTVAKECSGLPL-ALITTSR 231 (307)
Q Consensus 204 ~~~~l~~~~~~i~~~c~GlPL-ai~~ig~ 231 (307)
. -.+.+..+++.++|.+- |+..+-.
T Consensus 198 I---s~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 198 I---EDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred C---CHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 1 24567889999999664 4444433
No 52
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=93.72 E-value=0.86 Score=44.76 Aligned_cols=99 Identities=11% Similarity=0.077 Sum_probs=60.5
Q ss_pred CeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEEEec-CChhhhhcc-cccceeecCCCCHHhHHHHHHHHhCCCCCC
Q 041381 128 MKFLLLLDDIWER--IDLAKVGVPFPASSRNASKIVFTT-RLVDVCGLM-EAQKTFKVECFADQDAWELFLKKVGQETLE 203 (307)
Q Consensus 128 kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IivTt-r~~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~ 203 (307)
++-++|+|++... ...+.+... +-.-...+++|++| ....+...+ +....+.+.+++.++....+.+.+...+..
T Consensus 132 ~~KVvIIDEad~Ls~~a~naLLKt-LEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~ 210 (598)
T PRK09111 132 RYKVYIIDEVHMLSTAAFNALLKT-LEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE 210 (598)
T ss_pred CcEEEEEEChHhCCHHHHHHHHHH-HHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 4557899998643 233333322 32223456665544 444443322 234678999999999999998877544311
Q ss_pred CCCChHHHHHHHHHHCCCChHHHHHHH
Q 041381 204 SHPDIPELAQTVAKECSGLPLALITTS 230 (307)
Q Consensus 204 ~~~~l~~~~~~i~~~c~GlPLai~~ig 230 (307)
. -.+....|++.++|.+.-+....
T Consensus 211 i---~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 211 V---EDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred C---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 23567888999999887665444
No 53
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.68 E-value=0.91 Score=46.28 Aligned_cols=99 Identities=13% Similarity=0.094 Sum_probs=60.6
Q ss_pred CCeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEEEec-CChhhhhc-ccccceeecCCCCHHhHHHHHHHHhCCCCC
Q 041381 127 KMKFLLLLDDIWER--IDLAKVGVPFPASSRNASKIVFTT-RLVDVCGL-MEAQKTFKVECFADQDAWELFLKKVGQETL 202 (307)
Q Consensus 127 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IivTt-r~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 202 (307)
+++-++|+|++... ...+.|... +-......++|++| ....+... ..-...+++.+|+.++..+.+.+.+.....
T Consensus 118 gk~KViIIDEAh~LT~eAqNALLKt-LEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI 196 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSFNALLKT-LEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL 196 (944)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHH-HhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 55678999999753 334443322 22223345555544 44444322 223468999999999999998887654331
Q ss_pred CCCCChHHHHHHHHHHCCCChHHHHHH
Q 041381 203 ESHPDIPELAQTVAKECSGLPLALITT 229 (307)
Q Consensus 203 ~~~~~l~~~~~~i~~~c~GlPLai~~i 229 (307)
.--.+..+.|++.++|.|--+..+
T Consensus 197 ---~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 197 ---PFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred ---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 123456788999999988644433
No 54
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.63 E-value=0.97 Score=43.12 Aligned_cols=103 Identities=15% Similarity=0.067 Sum_probs=59.7
Q ss_pred CCeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEEEecCC-hhhhhcc-cccceeecCCCCHHhHHHHHHHHhCCCCC
Q 041381 127 KMKFLLLLDDIWER--IDLAKVGVPFPASSRNASKIVFTTRL-VDVCGLM-EAQKTFKVECFADQDAWELFLKKVGQETL 202 (307)
Q Consensus 127 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IivTtr~-~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 202 (307)
+++-++|+|++... .....+... +........+|++|.+ ..+...+ .....+.+.+++.++-...+.+.+...+.
T Consensus 116 ~~~kVvIIDE~h~Lt~~a~~~LLk~-LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi 194 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEAFNALLKT-LEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI 194 (472)
T ss_pred CCeEEEEEEChHHhHHHHHHHHHHH-HHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC
Confidence 34568999999653 233333333 3222234444444433 3343322 33467899999999988888887744331
Q ss_pred CCCCChHHHHHHHHHHCCC-ChHHHHHHHHHH
Q 041381 203 ESHPDIPELAQTVAKECSG-LPLALITTSRAM 233 (307)
Q Consensus 203 ~~~~~l~~~~~~i~~~c~G-lPLai~~ig~~L 233 (307)
. --.+....|++.++| ++.++..+-.+.
T Consensus 195 ~---i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 195 E---IDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred C---CCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 1 124566778887764 566766665543
No 55
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=93.60 E-value=1.1 Score=42.41 Aligned_cols=99 Identities=11% Similarity=0.103 Sum_probs=57.4
Q ss_pred CCeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEEEec-CChhhhhcc-cccceeecCCCCHHhHHHHHHHHhCCCCC
Q 041381 127 KMKFLLLLDDIWER--IDLAKVGVPFPASSRNASKIVFTT-RLVDVCGLM-EAQKTFKVECFADQDAWELFLKKVGQETL 202 (307)
Q Consensus 127 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IivTt-r~~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 202 (307)
+++-++|+|++... ...+.+... +.....++.+|++| +...+...+ .....+.+.++++++....+.+.+...+.
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~-lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~ 198 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKT-LEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI 198 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHH-hhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 45668899998643 223333222 22223355555555 333333322 33457899999999988888876643321
Q ss_pred CCCCChHHHHHHHHHHCCCChH-HHHHH
Q 041381 203 ESHPDIPELAQTVAKECSGLPL-ALITT 229 (307)
Q Consensus 203 ~~~~~l~~~~~~i~~~c~GlPL-ai~~i 229 (307)
. --.+.+..|++.++|.+- |+..+
T Consensus 199 ~---i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 199 E---TSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 224567889999998654 44443
No 56
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=93.36 E-value=1.6 Score=37.03 Aligned_cols=100 Identities=10% Similarity=0.026 Sum_probs=55.4
Q ss_pred EEEEEeCcCCHHH--HhhcCCCCCCC-CCCCe-EEEEecCChhhhh--------cccccceeecCCCCHHhHHHHHHHHh
Q 041381 130 FLLLLDDIWERID--LAKVGVPFPAS-SRNAS-KIVFTTRLVDVCG--------LMEAQKTFKVECFADQDAWELFLKKV 197 (307)
Q Consensus 130 ~LlVlDdv~~~~~--~~~l~~~~~~~-~~~gs-~IivTtr~~~v~~--------~~~~~~~~~l~~L~~~e~~~Lf~~~~ 197 (307)
-++|+||+..... -..+... +.. ...+. .+|+|++...... .+.....+.+.++++++-..++.+.+
T Consensus 92 ~~liiDdi~~l~~~~~~~L~~~-~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 92 ELYAVDDVERLDDAQQIALFNL-FNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred CEEEEeChhhcCchHHHHHHHH-HHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 4788999964321 1112111 111 12233 3666666432211 22224678999999987777776644
Q ss_pred CCCCCCCCCChHHHHHHHHHHCCCChHHHHHHHHHH
Q 041381 198 GQETLESHPDIPELAQTVAKECSGLPLALITTSRAM 233 (307)
Q Consensus 198 ~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ig~~L 233 (307)
...... --.+....+++.+.|.+..+..+-..|
T Consensus 171 ~~~~v~---l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 171 AERGLQ---LADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHcCCC---CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 322211 124567778888888888877666554
No 57
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.35 E-value=0.93 Score=42.23 Aligned_cols=98 Identities=8% Similarity=0.069 Sum_probs=59.2
Q ss_pred CCeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEEEec-CChhhhhcc-cccceeecCCCCHHhHHHHHHHHhCCCCC
Q 041381 127 KMKFLLLLDDIWER--IDLAKVGVPFPASSRNASKIVFTT-RLVDVCGLM-EAQKTFKVECFADQDAWELFLKKVGQETL 202 (307)
Q Consensus 127 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IivTt-r~~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 202 (307)
+++-++|+|++... ..++.+... +......+.+|++| +...+...+ .....+++.++++++....+...+...+.
T Consensus 126 ~~~kvvIIdea~~l~~~~~~~LLk~-LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~ 204 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIAAFNAFLKT-LEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI 204 (397)
T ss_pred CCeEEEEEeChhhCCHHHHHHHHHH-HhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC
Confidence 34568899998753 345544433 33334456655554 444443322 22357889999999988888877643221
Q ss_pred CCCCChHHHHHHHHHHCCCChHHHHH
Q 041381 203 ESHPDIPELAQTVAKECSGLPLALIT 228 (307)
Q Consensus 203 ~~~~~l~~~~~~i~~~c~GlPLai~~ 228 (307)
.--.+.+..|++.++|.+--+..
T Consensus 205 ---~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 205 ---SVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred ---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 12246778899999997754433
No 58
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.02 E-value=1.7 Score=42.14 Aligned_cols=99 Identities=11% Similarity=0.047 Sum_probs=58.8
Q ss_pred CCeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEE-EecCChhhhhc-ccccceeecCCCCHHhHHHHHHHHhCCCCC
Q 041381 127 KMKFLLLLDDIWER--IDLAKVGVPFPASSRNASKIV-FTTRLVDVCGL-MEAQKTFKVECFADQDAWELFLKKVGQETL 202 (307)
Q Consensus 127 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~Ii-vTtr~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 202 (307)
+++-++|+|++... ...+.+... +-.....+.+| +||....+... .+-...+++++++.++-...+.+.+...+.
T Consensus 118 g~~kViIIDEa~~ls~~a~naLLK~-LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi 196 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQSFNALLKT-LEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI 196 (546)
T ss_pred CCcEEEEEechhhccHHHHHHHHHH-HhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 45668999999753 334444333 32223345455 55544444422 233568899999999988888776543321
Q ss_pred CCCCChHHHHHHHHHHCCCChH-HHHHH
Q 041381 203 ESHPDIPELAQTVAKECSGLPL-ALITT 229 (307)
Q Consensus 203 ~~~~~l~~~~~~i~~~c~GlPL-ai~~i 229 (307)
.--......|++.++|.+- |+..+
T Consensus 197 ---~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 197 ---NSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred ---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1234556788899999664 44444
No 59
>PRK05642 DNA replication initiation factor; Validated
Probab=92.88 E-value=2.1 Score=36.77 Aligned_cols=95 Identities=13% Similarity=0.118 Sum_probs=54.8
Q ss_pred EEEEeCcCCH---HHHhh-cCCCCCCC-CCCCeEEEEecCChhh---------hhcccccceeecCCCCHHhHHHHHHHH
Q 041381 131 LLLLDDIWER---IDLAK-VGVPFPAS-SRNASKIVFTTRLVDV---------CGLMEAQKTFKVECFADQDAWELFLKK 196 (307)
Q Consensus 131 LlVlDdv~~~---~~~~~-l~~~~~~~-~~~gs~IivTtr~~~v---------~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 196 (307)
++|+||+... ..|+. +..- +.. ..+|..+|+||+...- ...+.....+++++++.++-.++++.+
T Consensus 100 ~LiiDDi~~~~~~~~~~~~Lf~l-~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 100 LVCLDDLDVIAGKADWEEALFHL-FNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred EEEEechhhhcCChHHHHHHHHH-HHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 6789999632 23332 1111 111 1346678998875422 122234467899999999999999866
Q ss_pred hCCCCCCCCCChHHHHHHHHHHCCCChHHHHHH
Q 041381 197 VGQETLESHPDIPELAQTVAKECSGLPLALITT 229 (307)
Q Consensus 197 ~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~i 229 (307)
+.......+ .+...-|++.+.|..-.+..+
T Consensus 179 a~~~~~~l~---~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 179 ASRRGLHLT---DEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred HHHcCCCCC---HHHHHHHHHhcCCCHHHHHHH
Confidence 533221111 466677777777665444433
No 60
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.84 E-value=0.96 Score=43.59 Aligned_cols=99 Identities=9% Similarity=0.020 Sum_probs=57.0
Q ss_pred CCeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEEEec-CChhhhhcc-cccceeecCCCCHHhHHHHHHHHhCCCCC
Q 041381 127 KMKFLLLLDDIWER--IDLAKVGVPFPASSRNASKIVFTT-RLVDVCGLM-EAQKTFKVECFADQDAWELFLKKVGQETL 202 (307)
Q Consensus 127 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IivTt-r~~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 202 (307)
++.-++|+|++... ...+.+... +-.....+++|++| ....+...+ +-...+++++++.++-...+.+.+...+.
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~-LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi 196 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKT-LEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV 196 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHH-HhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC
Confidence 45568899999752 333333222 22223456566554 333433222 23457889999999877777666644331
Q ss_pred CCCCChHHHHHHHHHHCCCChHHHHHH
Q 041381 203 ESHPDIPELAQTVAKECSGLPLALITT 229 (307)
Q Consensus 203 ~~~~~l~~~~~~i~~~c~GlPLai~~i 229 (307)
. --.+....|++.++|.+--+..+
T Consensus 197 ~---~~~~al~~ia~~s~GslR~al~l 220 (509)
T PRK14958 197 E---FENAALDLLARAANGSVRDALSL 220 (509)
T ss_pred C---CCHHHHHHHHHHcCCcHHHHHHH
Confidence 1 12345678888999987654443
No 61
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=92.83 E-value=0.75 Score=46.83 Aligned_cols=34 Identities=24% Similarity=0.248 Sum_probs=26.7
Q ss_pred CCceeeccccHHHHHHHHhcC-----CceEEEEEcCchh
Q 041381 84 QPTIIGLESTFDKVWRCLVEG-----QFGIIGLYGMGGK 117 (307)
Q Consensus 84 ~~~~vGr~~~~~~l~~~L~~~-----~~~vi~I~G~gGi 117 (307)
|..+.|||+++++|...|... ...++-|+|.+|.
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGT 792 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGT 792 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCC
Confidence 567889999999999888642 2356778898888
No 62
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.53 E-value=2.3 Score=41.82 Aligned_cols=100 Identities=10% Similarity=0.055 Sum_probs=60.3
Q ss_pred CCeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEEEecCC-hhhhhcc-cccceeecCCCCHHhHHHHHHHHhCCCCC
Q 041381 127 KMKFLLLLDDIWER--IDLAKVGVPFPASSRNASKIVFTTRL-VDVCGLM-EAQKTFKVECFADQDAWELFLKKVGQETL 202 (307)
Q Consensus 127 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IivTtr~-~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 202 (307)
+++-++|+|++... ...+.|... +......+.+|++|.+ ..+...+ .....+.+..++.++....+.+.+...+.
T Consensus 119 ~~~kVvIIDEa~~L~~~a~naLLk~-LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl 197 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTAAFNALLKT-LEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI 197 (585)
T ss_pred CCeEEEEEeChHhCCHHHHHHHHHH-HhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 34568999998643 334444332 3222345556555533 3333222 23457888999999988888887754431
Q ss_pred CCCCChHHHHHHHHHHCCCChHHHHHHH
Q 041381 203 ESHPDIPELAQTVAKECSGLPLALITTS 230 (307)
Q Consensus 203 ~~~~~l~~~~~~i~~~c~GlPLai~~ig 230 (307)
.. -.+.+..|++.++|.+..+...-
T Consensus 198 ~i---~~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 198 NL---EPGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred CC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 11 24567889999999886554443
No 63
>PRK06620 hypothetical protein; Validated
Probab=92.36 E-value=1.1 Score=38.04 Aligned_cols=89 Identities=8% Similarity=0.005 Sum_probs=52.3
Q ss_pred EEEEEeCcCCHHH--HhhcCCCCCCCCCCCeEEEEecCChhh-------hhcccccceeecCCCCHHhHHHHHHHHhCCC
Q 041381 130 FLLLLDDIWERID--LAKVGVPFPASSRNASKIVFTTRLVDV-------CGLMEAQKTFKVECFADQDAWELFLKKVGQE 200 (307)
Q Consensus 130 ~LlVlDdv~~~~~--~~~l~~~~~~~~~~gs~IivTtr~~~v-------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~ 200 (307)
-++++||+....+ +-.+... +. ..|..||+|++...- ...+.....+.+++++.++-..++++.+...
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~-~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNI-IN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CEEEEeccccchHHHHHHHHHH-HH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 4788999974322 2222111 11 346689999975432 2223445578999999999888887776432
Q ss_pred CCCCCCChHHHHHHHHHHCCCChH
Q 041381 201 TLESHPDIPELAQTVAKECSGLPL 224 (307)
Q Consensus 201 ~~~~~~~l~~~~~~i~~~c~GlPL 224 (307)
.... -++...-|++.+.|.--
T Consensus 164 ~l~l---~~ev~~~L~~~~~~d~r 184 (214)
T PRK06620 164 SVTI---SRQIIDFLLVNLPREYS 184 (214)
T ss_pred CCCC---CHHHHHHHHHHccCCHH
Confidence 2111 24566667666665443
No 64
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=92.20 E-value=2.4 Score=41.05 Aligned_cols=99 Identities=10% Similarity=0.103 Sum_probs=60.3
Q ss_pred CCeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEEEecCCh-hhhhcc-cccceeecCCCCHHhHHHHHHHHhCCCCC
Q 041381 127 KMKFLLLLDDIWER--IDLAKVGVPFPASSRNASKIVFTTRLV-DVCGLM-EAQKTFKVECFADQDAWELFLKKVGQETL 202 (307)
Q Consensus 127 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IivTtr~~-~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 202 (307)
+++-++|+|++... ...+.+... +-.....+.+|++|.+. .+...+ .-...+++.+++.++....+.+.+...+.
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~-LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi 194 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKT-LEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV 194 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHH-HhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 34568899998653 233333222 22223456666666543 332212 23468899999999998888877654431
Q ss_pred CCCCChHHHHHHHHHHCCCChHHHHHH
Q 041381 203 ESHPDIPELAQTVAKECSGLPLALITT 229 (307)
Q Consensus 203 ~~~~~l~~~~~~i~~~c~GlPLai~~i 229 (307)
. --.+....|++.++|.+--+..+
T Consensus 195 ~---i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 195 S---YEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred C---CCHHHHHHHHHHcCCcHHHHHHH
Confidence 1 22467788999999988555444
No 65
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.13 E-value=1.6 Score=42.38 Aligned_cols=96 Identities=10% Similarity=0.044 Sum_probs=57.0
Q ss_pred CCeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEEEec-CChhhhhc-ccccceeecCCCCHHhHHHHHHHHhCCCCC
Q 041381 127 KMKFLLLLDDIWER--IDLAKVGVPFPASSRNASKIVFTT-RLVDVCGL-MEAQKTFKVECFADQDAWELFLKKVGQETL 202 (307)
Q Consensus 127 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IivTt-r~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 202 (307)
+++-++|+|++... ...+.+... +-.....+.+|++| ....+... .+-...+++++++.++....+.+.+...+.
T Consensus 118 ~~~kVvIIDEad~ls~~a~naLLK~-LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi 196 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAFNAMLKT-LEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI 196 (527)
T ss_pred CCceEEEEcCcccCCHHHHHHHHHH-HhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC
Confidence 45668999999753 223333222 22223345555554 43333322 222457899999999988888877644331
Q ss_pred CCCCChHHHHHHHHHHCCCChHHH
Q 041381 203 ESHPDIPELAQTVAKECSGLPLAL 226 (307)
Q Consensus 203 ~~~~~l~~~~~~i~~~c~GlPLai 226 (307)
.--.+....|++.++|.+--+
T Consensus 197 ---~~~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 197 ---PFDATALQLLARAAAGSMRDA 217 (527)
T ss_pred ---CCCHHHHHHHHHHcCCCHHHH
Confidence 122455688899999977533
No 66
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=92.12 E-value=3.6 Score=38.36 Aligned_cols=106 Identities=16% Similarity=0.189 Sum_probs=71.7
Q ss_pred eEEEEEeCcCCH-----------HHHhhcCCCCCCCCCCCeEEEEecCChhhhhcc------cccceeecCCCCHHhHHH
Q 041381 129 KFLLLLDDIWER-----------IDLAKVGVPFPASSRNASKIVFTTRLVDVCGLM------EAQKTFKVECFADQDAWE 191 (307)
Q Consensus 129 r~LlVlDdv~~~-----------~~~~~l~~~~~~~~~~gs~IivTtr~~~v~~~~------~~~~~~~l~~L~~~e~~~ 191 (307)
+=+||+||.-+. .+|...... ++-..||++|-+....... ...+.+.|...+++.|..
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~-----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~ 223 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ-----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQ 223 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHh-----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHH
Confidence 668999998642 245543222 3445788888776554432 234578999999999999
Q ss_pred HHHHHhCCCCCC-------------C----CCChHHHHHHHHHHCCCChHHHHHHHHHHcCCCCh
Q 041381 192 LFLKKVGQETLE-------------S----HPDIPELAQTVAKECSGLPLALITTSRAMSSKKRP 239 (307)
Q Consensus 192 Lf~~~~~~~~~~-------------~----~~~l~~~~~~i~~~c~GlPLai~~ig~~L~~~~~~ 239 (307)
+...+....... . .......-...+..+||=-.-+..+++.++...++
T Consensus 224 yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 224 YVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred HHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 999988654100 0 01244455777888999999999999988876544
No 67
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=92.07 E-value=1.7 Score=43.05 Aligned_cols=99 Identities=12% Similarity=0.087 Sum_probs=59.3
Q ss_pred CCeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEE-EecCChhhhhc-ccccceeecCCCCHHhHHHHHHHHhCCCCC
Q 041381 127 KMKFLLLLDDIWER--IDLAKVGVPFPASSRNASKIV-FTTRLVDVCGL-MEAQKTFKVECFADQDAWELFLKKVGQETL 202 (307)
Q Consensus 127 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~Ii-vTtr~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 202 (307)
+++-++|+|++... ...+.+... +-......++| +||....+... .+-...+.+++++.++....+.+.+...+.
T Consensus 118 g~~KV~IIDEah~Ls~~a~NALLKt-LEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i 196 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSFNALLKT-LEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI 196 (647)
T ss_pred CCCEEEEEechHhCCHHHHHHHHHH-HHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 45668999999753 333333222 21222344444 55554544432 233568999999999999988887643321
Q ss_pred CCCCChHHHHHHHHHHCCCChHHHHHH
Q 041381 203 ESHPDIPELAQTVAKECSGLPLALITT 229 (307)
Q Consensus 203 ~~~~~l~~~~~~i~~~c~GlPLai~~i 229 (307)
..-....+.|++.++|.+--+..+
T Consensus 197 ---~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 197 ---PFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred ---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 122455678999999987654444
No 68
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.05 E-value=2.3 Score=41.95 Aligned_cols=96 Identities=10% Similarity=0.066 Sum_probs=58.7
Q ss_pred CCeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEE-EecCChhhhhcc-cccceeecCCCCHHhHHHHHHHHhCCCCC
Q 041381 127 KMKFLLLLDDIWER--IDLAKVGVPFPASSRNASKIV-FTTRLVDVCGLM-EAQKTFKVECFADQDAWELFLKKVGQETL 202 (307)
Q Consensus 127 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~Ii-vTtr~~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 202 (307)
+++-++|+|++... .....|... +.....++.+| +||....+...+ .....+.+.+++.++....+.+.+...+.
T Consensus 120 ~~~KVvIIdea~~Ls~~a~naLLK~-LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi 198 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAAFNAFLKT-LEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI 198 (614)
T ss_pred CCcEEEEEECcccCCHHHHHHHHHH-HhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC
Confidence 34557899998653 334444333 32223445554 455555554432 33568899999999998888887654431
Q ss_pred CCCCChHHHHHHHHHHCCCChHHH
Q 041381 203 ESHPDIPELAQTVAKECSGLPLAL 226 (307)
Q Consensus 203 ~~~~~l~~~~~~i~~~c~GlPLai 226 (307)
. --.+.+..|++.++|..--+
T Consensus 199 ~---i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 199 T---AEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred C---CCHHHHHHHHHHcCCCHHHH
Confidence 1 12346788899999866544
No 69
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=91.89 E-value=3.1 Score=41.66 Aligned_cols=96 Identities=10% Similarity=0.051 Sum_probs=57.3
Q ss_pred CCeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeE-EEEecCChhhhhc-ccccceeecCCCCHHhHHHHHHHHhCCCCC
Q 041381 127 KMKFLLLLDDIWER--IDLAKVGVPFPASSRNASK-IVFTTRLVDVCGL-MEAQKTFKVECFADQDAWELFLKKVGQETL 202 (307)
Q Consensus 127 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~-IivTtr~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 202 (307)
+++-++|+|++... ..+..+... +-.....+. |++||....+... ......+.+.+++.++-...+...+...+.
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKt-LEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI 195 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKT-LEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENI 195 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHH-hhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC
Confidence 45668899998642 334444322 222223344 5555555555432 233468899999999988888876543321
Q ss_pred CCCCChHHHHHHHHHHCCCChHHH
Q 041381 203 ESHPDIPELAQTVAKECSGLPLAL 226 (307)
Q Consensus 203 ~~~~~l~~~~~~i~~~c~GlPLai 226 (307)
. --.+.+..|++.++|.+--+
T Consensus 196 ~---id~eAl~~LA~lS~GslR~A 216 (725)
T PRK07133 196 S---YEKNALKLIAKLSSGSLRDA 216 (725)
T ss_pred C---CCHHHHHHHHHHcCCCHHHH
Confidence 1 12345778999998876533
No 70
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=91.78 E-value=0.54 Score=47.47 Aligned_cols=110 Identities=16% Similarity=0.143 Sum_probs=65.3
Q ss_pred ceeeccccHHHHHHHHhcCCceEEEEEcCchh---------------------------------------------HHH
Q 041381 86 TIIGLESTFDKVWRCLVEGQFGIIGLYGMGGK---------------------------------------------ASG 120 (307)
Q Consensus 86 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGi---------------------------------------------~~~ 120 (307)
.++||+++++++++.|......-+.++|.+|+ .+.
T Consensus 183 ~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~ 262 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEER 262 (731)
T ss_pred cccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHH
Confidence 58999999999999887664445568888888 123
Q ss_pred HHHHh----cCCeEEEEEeCcCCHH----------HHhhcCCCCCCCCCCCeEEEEecCChhhhh-------ccccccee
Q 041381 121 IFNLL----SKMKFLLLLDDIWERI----------DLAKVGVPFPASSRNASKIVFTTRLVDVCG-------LMEAQKTF 179 (307)
Q Consensus 121 l~~~l----~~kr~LlVlDdv~~~~----------~~~~l~~~~~~~~~~gs~IivTtr~~~v~~-------~~~~~~~~ 179 (307)
+++.+ +.++.+|++|++.... +...+..+.+. .+.=..|-.||. .+... ...--..+
T Consensus 263 l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~-~g~i~~IgaTt~-~e~~~~~~~d~al~rRf~~i 340 (731)
T TIGR02639 263 LKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS-SGKLRCIGSTTY-EEYKNHFEKDRALSRRFQKI 340 (731)
T ss_pred HHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh-CCCeEEEEecCH-HHHHHHhhhhHHHHHhCceE
Confidence 33333 2357899999986321 11222222122 122223444454 22111 01112478
Q ss_pred ecCCCCHHhHHHHHHHHh
Q 041381 180 KVECFADQDAWELFLKKV 197 (307)
Q Consensus 180 ~l~~L~~~e~~~Lf~~~~ 197 (307)
.+++++.++..+++....
T Consensus 341 ~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 341 DVGEPSIEETVKILKGLK 358 (731)
T ss_pred EeCCCCHHHHHHHHHHHH
Confidence 999999999999998654
No 71
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=91.37 E-value=1.5 Score=37.21 Aligned_cols=91 Identities=15% Similarity=0.099 Sum_probs=49.6
Q ss_pred EEEEEeCcCCH---HHHhh----cCCCCCCCCCCCeEEEEecCChh---------hhhcccccceeecCCCCHHhHHHHH
Q 041381 130 FLLLLDDIWER---IDLAK----VGVPFPASSRNASKIVFTTRLVD---------VCGLMEAQKTFKVECFADQDAWELF 193 (307)
Q Consensus 130 ~LlVlDdv~~~---~~~~~----l~~~~~~~~~~gs~IivTtr~~~---------v~~~~~~~~~~~l~~L~~~e~~~Lf 193 (307)
=+|++||+... ..|+. +... + ...|.+||+|+...- +...+..+-.+++++++.++-.+++
T Consensus 99 DlL~iDDi~~l~~~~~~q~~lf~l~n~-~--~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il 175 (219)
T PF00308_consen 99 DLLIIDDIQFLAGKQRTQEELFHLFNR-L--IESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRIL 175 (219)
T ss_dssp SEEEEETGGGGTTHHHHHHHHHHHHHH-H--HHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHH
T ss_pred CEEEEecchhhcCchHHHHHHHHHHHH-H--HhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHH
Confidence 37789999752 22322 1111 1 134668999996542 2223345568899999999999999
Q ss_pred HHHhCCCCCCCCCChHHHHHHHHHHCCCChHHH
Q 041381 194 LKKVGQETLESHPDIPELAQTVAKECSGLPLAL 226 (307)
Q Consensus 194 ~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai 226 (307)
.+.+...... --++++.-|++.+.+..-.+
T Consensus 176 ~~~a~~~~~~---l~~~v~~~l~~~~~~~~r~L 205 (219)
T PF00308_consen 176 QKKAKERGIE---LPEEVIEYLARRFRRDVREL 205 (219)
T ss_dssp HHHHHHTT-----S-HHHHHHHHHHTTSSHHHH
T ss_pred HHHHHHhCCC---CcHHHHHHHHHhhcCCHHHH
Confidence 9988654422 22445566666665544333
No 72
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=91.32 E-value=4.4 Score=39.64 Aligned_cols=98 Identities=12% Similarity=0.071 Sum_probs=57.3
Q ss_pred CCeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeE-EEEecCChhhhhcc-cccceeecCCCCHHhHHHHHHHHhCCCCC
Q 041381 127 KMKFLLLLDDIWER--IDLAKVGVPFPASSRNASK-IVFTTRLVDVCGLM-EAQKTFKVECFADQDAWELFLKKVGQETL 202 (307)
Q Consensus 127 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~-IivTtr~~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 202 (307)
++.-++|+|++... ..+..+... +........ |+.||....+...+ +....+...+++.++....+...+...+.
T Consensus 118 ~~~kViIIDE~~~Lt~~a~naLLKt-LEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi 196 (559)
T PRK05563 118 AKYKVYIIDEVHMLSTGAFNALLKT-LEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGI 196 (559)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHH-hcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 45567899998743 344444333 222223344 44455444443322 33457888999999988888877644331
Q ss_pred CCCCChHHHHHHHHHHCCCChHHHHH
Q 041381 203 ESHPDIPELAQTVAKECSGLPLALIT 228 (307)
Q Consensus 203 ~~~~~l~~~~~~i~~~c~GlPLai~~ 228 (307)
.. -.+....|++.++|.+..+..
T Consensus 197 ~i---~~~al~~ia~~s~G~~R~al~ 219 (559)
T PRK05563 197 EY---EDEALRLIARAAEGGMRDALS 219 (559)
T ss_pred CC---CHHHHHHHHHHcCCCHHHHHH
Confidence 11 245677888888887765443
No 73
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=91.31 E-value=1.2 Score=41.54 Aligned_cols=63 Identities=14% Similarity=0.082 Sum_probs=47.0
Q ss_pred CeEEEEEeCcCCHHHHhhcCCCCCCCCCCCeEEEEecCChhhhh-----c-ccccceeecCCCCHHhHHHH
Q 041381 128 MKFLLLLDDIWERIDLAKVGVPFPASSRNASKIVFTTRLVDVCG-----L-MEAQKTFKVECFADQDAWEL 192 (307)
Q Consensus 128 kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IivTtr~~~v~~-----~-~~~~~~~~l~~L~~~e~~~L 192 (307)
++.+++||.|....+|+..... +.+.++. +|++|+.+..+.. . .|-...+.+.||+..|...+
T Consensus 94 ~~~yifLDEIq~v~~W~~~lk~-l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 94 EKSYIFLDEIQNVPDWERALKY-LYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKL 162 (398)
T ss_pred CCceEEEecccCchhHHHHHHH-HHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhh
Confidence 6689999999999999887666 5555555 8898888765522 1 23456789999999998653
No 74
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=90.92 E-value=4.5 Score=37.60 Aligned_cols=133 Identities=20% Similarity=0.232 Sum_probs=78.4
Q ss_pred ceeeccccHHHHHHHHhc-------------CCceEEEEEcCchh---------------------------------HH
Q 041381 86 TIIGLESTFDKVWRCLVE-------------GQFGIIGLYGMGGK---------------------------------AS 119 (307)
Q Consensus 86 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGi---------------------------------~~ 119 (307)
++.|+++.++++.+.+.. ...+-|.++|.+|. ..
T Consensus 132 di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~ 211 (389)
T PRK03992 132 DIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGAR 211 (389)
T ss_pred HhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHH
Confidence 467999999998886632 12456889999998 11
Q ss_pred HHHHHh----cCCeEEEEEeCcCCHH------------H----HhhcCCCCCC--CCCCCeEEEEecCChhhhhc--c--
Q 041381 120 GIFNLL----SKMKFLLLLDDIWERI------------D----LAKVGVPFPA--SSRNASKIVFTTRLVDVCGL--M-- 173 (307)
Q Consensus 120 ~l~~~l----~~kr~LlVlDdv~~~~------------~----~~~l~~~~~~--~~~~gs~IivTtr~~~v~~~--~-- 173 (307)
.++..+ .....+|++|+++... . +..+... +. ....+..||.||...+.... .
T Consensus 212 ~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~-ld~~~~~~~v~VI~aTn~~~~ld~allRp 290 (389)
T PRK03992 212 LVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAE-MDGFDPRGNVKIIAATNRIDILDPAILRP 290 (389)
T ss_pred HHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHh-ccccCCCCCEEEEEecCChhhCCHHHcCC
Confidence 222222 2345899999997421 1 1122111 11 12235678878876443221 1
Q ss_pred -cccceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCCh
Q 041381 174 -EAQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLP 223 (307)
Q Consensus 174 -~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 223 (307)
.-...+.+++.+.++-.++|+.++.........+ ...+++.+.|.-
T Consensus 291 gRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 291 GRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGAS 337 (389)
T ss_pred ccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCCC
Confidence 1245789999999999999998875443222223 355666666653
No 75
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.79 E-value=3.9 Score=40.09 Aligned_cols=99 Identities=12% Similarity=0.061 Sum_probs=58.4
Q ss_pred CCeEEEEEeCcCC--HHHHhhcCCCCCCCCCCCeE-EEEecCChhhhhcc-cccceeecCCCCHHhHHHHHHHHhCCCCC
Q 041381 127 KMKFLLLLDDIWE--RIDLAKVGVPFPASSRNASK-IVFTTRLVDVCGLM-EAQKTFKVECFADQDAWELFLKKVGQETL 202 (307)
Q Consensus 127 ~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~-IivTtr~~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 202 (307)
+++-++|+|++.. ....+.|... +......+. |++||....+...+ +-...+.+.+++.++..+.+.+.+...+.
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~-LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi 195 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKI-VEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV 195 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHH-HhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 4556889999864 3334443322 322233444 44555555544332 33568999999999988888877654331
Q ss_pred CCCCChHHHHHHHHHHCCCChH-HHHHH
Q 041381 203 ESHPDIPELAQTVAKECSGLPL-ALITT 229 (307)
Q Consensus 203 ~~~~~l~~~~~~i~~~c~GlPL-ai~~i 229 (307)
. --.+....|++.++|.+- |+..+
T Consensus 196 ~---i~~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 196 V---VDDAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 123456778888998774 34433
No 76
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=90.76 E-value=7.1 Score=38.21 Aligned_cols=99 Identities=9% Similarity=0.076 Sum_probs=59.8
Q ss_pred CCeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEEEecC-Chhhhhcc-cccceeecCCCCHHhHHHHHHHHhCCCCC
Q 041381 127 KMKFLLLLDDIWER--IDLAKVGVPFPASSRNASKIVFTTR-LVDVCGLM-EAQKTFKVECFADQDAWELFLKKVGQETL 202 (307)
Q Consensus 127 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IivTtr-~~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 202 (307)
+++-++|+|++... ..++.+... +......+.+|++|. ...+...+ .....+...+++.++-...+...+...+.
T Consensus 118 ~~~KVvIIDEa~~Ls~~a~naLLK~-LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi 196 (563)
T PRK06647 118 SRYRVYIIDEVHMLSNSAFNALLKT-IEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI 196 (563)
T ss_pred CCCEEEEEEChhhcCHHHHHHHHHh-hccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 45668899998653 345555444 333334556655553 33443222 23457889999999988888877643331
Q ss_pred CCCCChHHHHHHHHHHCCCChHHHHHH
Q 041381 203 ESHPDIPELAQTVAKECSGLPLALITT 229 (307)
Q Consensus 203 ~~~~~l~~~~~~i~~~c~GlPLai~~i 229 (307)
+--.+....|++.++|.+-.+...
T Consensus 197 ---~id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 197 ---KYEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred ---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 122456777889999987544443
No 77
>CHL00095 clpC Clp protease ATP binding subunit
Probab=90.20 E-value=0.73 Score=47.17 Aligned_cols=33 Identities=24% Similarity=0.218 Sum_probs=26.5
Q ss_pred CceeeccccHHHHHHHHhcCCceEEEEEcCchh
Q 041381 85 PTIIGLESTFDKVWRCLVEGQFGIIGLYGMGGK 117 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGi 117 (307)
..++||+++++.+++.|......-+.++|.+|+
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGv 211 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGV 211 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCC
Confidence 357999999999999998664444568888888
No 78
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.82 E-value=3.6 Score=40.36 Aligned_cols=98 Identities=14% Similarity=0.028 Sum_probs=55.9
Q ss_pred CeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEE-EecCChhhhhcc-cccceeecCCCCHHhHHHHHHHHhCCCCCC
Q 041381 128 MKFLLLLDDIWER--IDLAKVGVPFPASSRNASKIV-FTTRLVDVCGLM-EAQKTFKVECFADQDAWELFLKKVGQETLE 203 (307)
Q Consensus 128 kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~Ii-vTtr~~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~ 203 (307)
++-++|+|++... ...+.+... +-.....+.+| +||....+...+ +....+.+.+++.++....+...+...+..
T Consensus 119 ~~KVvIIdev~~Lt~~a~naLLk~-LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~ 197 (576)
T PRK14965 119 RYKIFIIDEVHMLSTNAFNALLKT-LEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS 197 (576)
T ss_pred CceEEEEEChhhCCHHHHHHHHHH-HHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 4457889998643 223333222 22222344455 555555554332 335578889999999888887766443311
Q ss_pred CCCChHHHHHHHHHHCCCCh-HHHHHH
Q 041381 204 SHPDIPELAQTVAKECSGLP-LALITT 229 (307)
Q Consensus 204 ~~~~l~~~~~~i~~~c~GlP-Lai~~i 229 (307)
--.+....|++.++|.. .|+..+
T Consensus 198 ---i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 198 ---ISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred ---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 12456678888888865 444444
No 79
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=89.68 E-value=3.5 Score=35.13 Aligned_cols=145 Identities=14% Similarity=0.146 Sum_probs=79.6
Q ss_pred CceeeccccHHHHHHHHh-----cCCceEEEEEcCchh------------------------------HHHHHHHhcCCe
Q 041381 85 PTIIGLESTFDKVWRCLV-----EGQFGIIGLYGMGGK------------------------------ASGIFNLLSKMK 129 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~-----~~~~~vi~I~G~gGi------------------------------~~~l~~~l~~kr 129 (307)
.+|||.++.++.+.-++. .+.+.-+-.+|++|+ ...+...++ ++
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~il~~l~-~~ 102 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAILTNLK-EG 102 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHHHHT---TT
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHHHHhcC-CC
Confidence 468999988887654443 124678889999999 222233343 45
Q ss_pred EEEEEeCcCCHH---------HHhhcCCCCCCCCC-----------CCeEEEEecCChhhhhcccc--cceeecCCCCHH
Q 041381 130 FLLLLDDIWERI---------DLAKVGVPFPASSR-----------NASKIVFTTRLVDVCGLMEA--QKTFKVECFADQ 187 (307)
Q Consensus 130 ~LlVlDdv~~~~---------~~~~l~~~~~~~~~-----------~gs~IivTtr~~~v~~~~~~--~~~~~l~~L~~~ 187 (307)
-+|.+|.+.... ..+.....+.-..+ +-+-|=.|||...+...+.. ....+++..+.+
T Consensus 103 ~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~ 182 (233)
T PF05496_consen 103 DILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEE 182 (233)
T ss_dssp -EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THH
T ss_pred cEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHH
Confidence 577789997531 12221110000111 22446678887666554433 234589999999
Q ss_pred hHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChHHHHHHHHHH
Q 041381 188 DAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALITTSRAM 233 (307)
Q Consensus 188 e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ig~~L 233 (307)
|-.++..+.+..-+. +--.+.+.+|++.|.|-|--+.-+-+..
T Consensus 183 el~~Iv~r~a~~l~i---~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 183 ELAKIVKRSARILNI---EIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp HHHHHHHHCCHCTT----EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC---CcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 999999887754431 2235789999999999997655444443
No 80
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=89.23 E-value=3.5 Score=40.48 Aligned_cols=86 Identities=21% Similarity=0.117 Sum_probs=53.1
Q ss_pred EEEEeCcCCH---HHH----hhcCCCCCCCCCCCeEEEEecCCh---------hhhhcccccceeecCCCCHHhHHHHHH
Q 041381 131 LLLLDDIWER---IDL----AKVGVPFPASSRNASKIVFTTRLV---------DVCGLMEAQKTFKVECFADQDAWELFL 194 (307)
Q Consensus 131 LlVlDdv~~~---~~~----~~l~~~~~~~~~~gs~IivTtr~~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf~ 194 (307)
+|++||+... ..| -.+... +. ..|..||+||... .+...+.....+.+++.+.+.-.++++
T Consensus 380 LLlIDDIq~l~gke~tqeeLF~l~N~-l~--e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 380 ILLVDDIQFLEDKESTQEEFFHTFNT-LH--NANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred EEEEehhccccCCHHHHHHHHHHHHH-HH--hcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 7999999642 122 222222 11 2356688888763 223334556688999999999999999
Q ss_pred HHhCCCCCCCCCChHHHHHHHHHHCCCC
Q 041381 195 KKVGQETLESHPDIPELAQTVAKECSGL 222 (307)
Q Consensus 195 ~~~~~~~~~~~~~l~~~~~~i~~~c~Gl 222 (307)
+++.......+ .++..-|++.+.+.
T Consensus 457 kka~~r~l~l~---~eVi~yLa~r~~rn 481 (617)
T PRK14086 457 KKAVQEQLNAP---PEVLEFIASRISRN 481 (617)
T ss_pred HHHHhcCCCCC---HHHHHHHHHhccCC
Confidence 98865442222 45556666666544
No 81
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.97 E-value=7.5 Score=38.50 Aligned_cols=100 Identities=12% Similarity=0.024 Sum_probs=58.2
Q ss_pred CCeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEEEecCC-hhhhhcc-cccceeecCCCCHHhHHHHHHHHhCCCCC
Q 041381 127 KMKFLLLLDDIWER--IDLAKVGVPFPASSRNASKIVFTTRL-VDVCGLM-EAQKTFKVECFADQDAWELFLKKVGQETL 202 (307)
Q Consensus 127 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IivTtr~-~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 202 (307)
+++-++|+|++... .....|... +-.....+.+|++|.+ ..+...+ .-...+.+..++.++....+.+.+...+.
T Consensus 120 ~~~KViIIDEad~Lt~~a~naLLK~-LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi 198 (620)
T PRK14948 120 ARWKVYVIDECHMLSTAAFNALLKT-LEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESI 198 (620)
T ss_pred CCceEEEEECccccCHHHHHHHHHH-HhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 44568899999753 334444333 3222334545544433 3333222 23456788899999888888777654331
Q ss_pred CCCCChHHHHHHHHHHCCCChHHHHHHH
Q 041381 203 ESHPDIPELAQTVAKECSGLPLALITTS 230 (307)
Q Consensus 203 ~~~~~l~~~~~~i~~~c~GlPLai~~ig 230 (307)
.. -.+....|++.++|.+..+....
T Consensus 199 ~i---s~~al~~La~~s~G~lr~A~~lL 223 (620)
T PRK14948 199 EI---EPEALTLVAQRSQGGLRDAESLL 223 (620)
T ss_pred CC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 11 13567889999999876554443
No 82
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=88.89 E-value=7 Score=35.18 Aligned_cols=97 Identities=9% Similarity=0.039 Sum_probs=57.4
Q ss_pred CCeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEEEecCChhhhhcc-cccceeecCCCCHHhHHHHHHHHhCCCCCC
Q 041381 127 KMKFLLLLDDIWER--IDLAKVGVPFPASSRNASKIVFTTRLVDVCGLM-EAQKTFKVECFADQDAWELFLKKVGQETLE 203 (307)
Q Consensus 127 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IivTtr~~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~ 203 (307)
+++-++|+|++... ...+.+... +-...+..-|++|+.-..+...+ +-...+.+.++++++..+.+.+......
T Consensus 123 ~~~kVvII~~ae~m~~~aaNaLLK~-LEEPp~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~-- 199 (314)
T PRK07399 123 APRKVVVIEDAETMNEAAANALLKT-LEEPGNGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI-- 199 (314)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHH-HhCCCCCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc--
Confidence 45668888988653 222222211 11112334455555544444433 3356899999999999999988643221
Q ss_pred CCCChHHHHHHHHHHCCCChHHHHHHH
Q 041381 204 SHPDIPELAQTVAKECSGLPLALITTS 230 (307)
Q Consensus 204 ~~~~l~~~~~~i~~~c~GlPLai~~ig 230 (307)
.......++..++|.|..+....
T Consensus 200 ----~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 200 ----LNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred ----chhHHHHHHHHcCCCHHHHHHHH
Confidence 11113578899999998765543
No 83
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.89 E-value=6.6 Score=38.85 Aligned_cols=94 Identities=10% Similarity=0.040 Sum_probs=55.7
Q ss_pred CCeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEE-EecCChhhhhc-ccccceeecCCCCHHhHHHHHHHHhCCCCC
Q 041381 127 KMKFLLLLDDIWER--IDLAKVGVPFPASSRNASKIV-FTTRLVDVCGL-MEAQKTFKVECFADQDAWELFLKKVGQETL 202 (307)
Q Consensus 127 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~Ii-vTtr~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 202 (307)
+++-++|+|++... ...+.|... +-.....+.+| +|++...+... ......+++.+++.++....+.+.+...+.
T Consensus 126 ~~~KVvIIdEad~Lt~~a~naLLK~-LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi 204 (620)
T PRK14954 126 GRYRVYIIDEVHMLSTAAFNAFLKT-LEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI 204 (620)
T ss_pred CCCEEEEEeChhhcCHHHHHHHHHH-HhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 34557899998653 233333332 22223345544 45444444432 234568899999999988888776643221
Q ss_pred CCCCChHHHHHHHHHHCCCChH
Q 041381 203 ESHPDIPELAQTVAKECSGLPL 224 (307)
Q Consensus 203 ~~~~~l~~~~~~i~~~c~GlPL 224 (307)
. --.+.+..|++.++|..-
T Consensus 205 ~---I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 205 Q---IDADALQLIARKAQGSMR 223 (620)
T ss_pred C---CCHHHHHHHHHHhCCCHH
Confidence 1 124567889999999554
No 84
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.62 E-value=11 Score=36.30 Aligned_cols=100 Identities=9% Similarity=0.016 Sum_probs=57.6
Q ss_pred CCeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEEE-ecCChhhhhc-ccccceeecCCCCHHhHHHHHHHHhCCCCC
Q 041381 127 KMKFLLLLDDIWER--IDLAKVGVPFPASSRNASKIVF-TTRLVDVCGL-MEAQKTFKVECFADQDAWELFLKKVGQETL 202 (307)
Q Consensus 127 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~Iiv-Ttr~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 202 (307)
+++-++|+|++... ...+.+... +........+|+ ||+...+... ......+.+.+++.++-...+...+...+.
T Consensus 118 ~~~KVvIIDEad~Lt~~a~naLLk~-LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi 196 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEAFNALLKT-LEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI 196 (486)
T ss_pred CCeeEEEEEChhhcCHHHHHHHHHH-HhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 45568999998643 233333222 222233444444 4444443322 223457899999999988888876643331
Q ss_pred CCCCChHHHHHHHHHHCCCChHHHHHHH
Q 041381 203 ESHPDIPELAQTVAKECSGLPLALITTS 230 (307)
Q Consensus 203 ~~~~~l~~~~~~i~~~c~GlPLai~~ig 230 (307)
. --.+....|+..++|.+-.+....
T Consensus 197 ~---id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 197 E---YEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 123556778888999766544443
No 85
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=88.38 E-value=2.3 Score=38.10 Aligned_cols=110 Identities=7% Similarity=-0.006 Sum_probs=64.9
Q ss_pred CceeeccccHHHHHHHHhcCC-ceEEEEEcCchh--------------------------HHHHHHHh---------cCC
Q 041381 85 PTIIGLESTFDKVWRCLVEGQ-FGIIGLYGMGGK--------------------------ASGIFNLL---------SKM 128 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGi--------------------------~~~l~~~l---------~~k 128 (307)
.+++|.++..+.+..++..+. ..++.++|..|+ ...+++.+ .+.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~~~~~~i~~~l~~~~~~~~~~~~ 100 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSDCRIDFVRNRLTRFASTVSLTGG 100 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCcccHHHHHHHHHHHHHhhcccCC
Confidence 457899999999999888765 456677899988 01122211 134
Q ss_pred eEEEEEeCcCCH---HHHhhcCCCCCCCCCCCeEEEEecCChhh-hhcc-cccceeecCCCCHHhHHHHHHH
Q 041381 129 KFLLLLDDIWER---IDLAKVGVPFPASSRNASKIVFTTRLVDV-CGLM-EAQKTFKVECFADQDAWELFLK 195 (307)
Q Consensus 129 r~LlVlDdv~~~---~~~~~l~~~~~~~~~~gs~IivTtr~~~v-~~~~-~~~~~~~l~~L~~~e~~~Lf~~ 195 (307)
+-++|+|++... .....+... +.....++.+|+||....- ...+ +....+.++..+.++..+++..
T Consensus 101 ~~vliiDe~d~l~~~~~~~~L~~~-le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 101 GKVIIIDEFDRLGLADAQRHLRSF-MEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred CeEEEEECcccccCHHHHHHHHHH-HHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHH
Confidence 567899999744 112222211 2223456788888865431 1111 2234667777788877666543
No 86
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=88.19 E-value=2.7 Score=38.42 Aligned_cols=134 Identities=14% Similarity=0.184 Sum_probs=80.2
Q ss_pred eeeccccHH---HHHHHHhcCCceEEEEEcCchh-----------------------------HHHHH---------HHh
Q 041381 87 IIGLESTFD---KVWRCLVEGQFGIIGLYGMGGK-----------------------------ASGIF---------NLL 125 (307)
Q Consensus 87 ~vGr~~~~~---~l~~~L~~~~~~vi~I~G~gGi-----------------------------~~~l~---------~~l 125 (307)
.||.+..+. .|.+.+.++.+..+.+||.+|. .+.++ ..+
T Consensus 140 yvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq~~~~l 219 (554)
T KOG2028|consen 140 YVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQNEKSL 219 (554)
T ss_pred hcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHHHHHHhh
Confidence 455544332 3344444567888999999998 12222 123
Q ss_pred cCCeEEEEEeCcCCHH--HHhhcCCCCCCCCCCCeEEEE--ecCChhh---hhcccccceeecCCCCHHhHHHHHHHHh-
Q 041381 126 SKMKFLLLLDDIWERI--DLAKVGVPFPASSRNASKIVF--TTRLVDV---CGLMEAQKTFKVECFADQDAWELFLKKV- 197 (307)
Q Consensus 126 ~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~gs~Iiv--Ttr~~~v---~~~~~~~~~~~l~~L~~~e~~~Lf~~~~- 197 (307)
.++|..|.+|.|..-+ +-+.| +|.-.+|+-++| ||.+... +..+.-..++.|++|+.++-..++.+..
T Consensus 220 ~krkTilFiDEiHRFNksQQD~f----LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia 295 (554)
T KOG2028|consen 220 TKRKTILFIDEIHRFNKSQQDTF----LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIA 295 (554)
T ss_pred hcceeEEEeHHhhhhhhhhhhcc----cceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHH
Confidence 4578889999996432 23322 666677876665 6666543 2334556789999999999999988743
Q ss_pred --CCCCC---CCCC-C---hHHHHHHHHHHCCCChH
Q 041381 198 --GQETL---ESHP-D---IPELAQTVAKECSGLPL 224 (307)
Q Consensus 198 --~~~~~---~~~~-~---l~~~~~~i~~~c~GlPL 224 (307)
+.... ..+. . -..+..-++..|.|-.-
T Consensus 296 ~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 296 SLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred hhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 22111 1111 1 23356667777877643
No 87
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=88.13 E-value=1.5 Score=44.98 Aligned_cols=111 Identities=15% Similarity=0.180 Sum_probs=67.0
Q ss_pred CceeeccccHHHHHHHHhcCCceEEEEEcCchh---------------------------------------------HH
Q 041381 85 PTIIGLESTFDKVWRCLVEGQFGIIGLYGMGGK---------------------------------------------AS 119 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGi---------------------------------------------~~ 119 (307)
..++||+.++.+++..|......-+.++|.+|+ .+
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~ 266 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFEN 266 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHH
Confidence 357999999999999888765445568888888 12
Q ss_pred HHHHHhc-----CCeEEEEEeCcCCHH---------HHhhcCCCCCCCCCCCeEEEEecCChhhhhcc-------cccce
Q 041381 120 GIFNLLS-----KMKFLLLLDDIWERI---------DLAKVGVPFPASSRNASKIVFTTRLVDVCGLM-------EAQKT 178 (307)
Q Consensus 120 ~l~~~l~-----~kr~LlVlDdv~~~~---------~~~~l~~~~~~~~~~gs~IivTtr~~~v~~~~-------~~~~~ 178 (307)
.+++.+. +++.+|++|++.... +...+..+.+.. + .-++|-||........+ .-...
T Consensus 267 ~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~-G-~l~~IgaTT~~e~~~~~~~d~AL~rRf~~ 344 (852)
T TIGR03345 267 RLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR-G-ELRTIAATTWAEYKKYFEKDPALTRRFQV 344 (852)
T ss_pred HHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC-C-CeEEEEecCHHHHhhhhhccHHHHHhCeE
Confidence 3333332 357899999986431 111122221221 1 24555555543221111 22357
Q ss_pred eecCCCCHHhHHHHHHHHh
Q 041381 179 FKVECFADQDAWELFLKKV 197 (307)
Q Consensus 179 ~~l~~L~~~e~~~Lf~~~~ 197 (307)
+.+++++.++..+++....
T Consensus 345 i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 345 VKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred EEeCCCCHHHHHHHHHHHH
Confidence 8999999999999975443
No 88
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=87.84 E-value=6.3 Score=36.76 Aligned_cols=134 Identities=11% Similarity=0.122 Sum_probs=77.0
Q ss_pred ceeeccccHHHHHHHHhc-------------CCceEEEEEcCchh---------------------------------HH
Q 041381 86 TIIGLESTFDKVWRCLVE-------------GQFGIIGLYGMGGK---------------------------------AS 119 (307)
Q Consensus 86 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGi---------------------------------~~ 119 (307)
++.|.+..+++|.+.+.- ...+-+.++|.+|. ..
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~ 225 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPR 225 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHH
Confidence 467888888777765531 13567889999998 11
Q ss_pred HHHHH----hcCCeEEEEEeCcCCH------------H----HHhhcCCCCCC--CCCCCeEEEEecCChhhhhc--c--
Q 041381 120 GIFNL----LSKMKFLLLLDDIWER------------I----DLAKVGVPFPA--SSRNASKIVFTTRLVDVCGL--M-- 173 (307)
Q Consensus 120 ~l~~~----l~~kr~LlVlDdv~~~------------~----~~~~l~~~~~~--~~~~gs~IivTtr~~~v~~~--~-- 173 (307)
.+++. ......+|++|+++.. . .+..+... +. ....+..||.||...+.... .
T Consensus 226 ~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~-ld~~~~~~~v~VI~aTN~~d~LDpAllR~ 304 (398)
T PTZ00454 226 MVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQ-MDGFDQTTNVKVIMATNRADTLDPALLRP 304 (398)
T ss_pred HHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHH-hhccCCCCCEEEEEecCCchhCCHHHcCC
Confidence 12222 2346789999997631 0 11122111 11 12345678888876554321 1
Q ss_pred -cccceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChH
Q 041381 174 -EAQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPL 224 (307)
Q Consensus 174 -~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPL 224 (307)
.-...+.+...+.++..++|...........+.++ ..+++...|..-
T Consensus 305 GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~----~~la~~t~g~sg 352 (398)
T PTZ00454 305 GRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDL----EDFVSRPEKISA 352 (398)
T ss_pred CcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCH----HHHHHHcCCCCH
Confidence 12456888889999988888877654332223333 455566666543
No 89
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=87.74 E-value=4.1 Score=35.48 Aligned_cols=71 Identities=8% Similarity=0.068 Sum_probs=39.9
Q ss_pred eEEEEEeCcCCH----------HHHhhcCCCCCCCCCCCeEEEEecCChhhhh------cc--cccceeecCCCCHHhHH
Q 041381 129 KFLLLLDDIWER----------IDLAKVGVPFPASSRNASKIVFTTRLVDVCG------LM--EAQKTFKVECFADQDAW 190 (307)
Q Consensus 129 r~LlVlDdv~~~----------~~~~~l~~~~~~~~~~gs~IivTtr~~~v~~------~~--~~~~~~~l~~L~~~e~~ 190 (307)
..+|++|++... +....+... +........+++++....... .+ .....+.+++++.++-.
T Consensus 106 ~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~-~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~ 184 (261)
T TIGR02881 106 GGVLFIDEAYSLARGGEKDFGKEAIDTLVKG-MEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELM 184 (261)
T ss_pred CCEEEEechhhhccCCccchHHHHHHHHHHH-HhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHH
Confidence 358899999641 223333332 223233345556654433211 11 11346788999999999
Q ss_pred HHHHHHhCCC
Q 041381 191 ELFLKKVGQE 200 (307)
Q Consensus 191 ~Lf~~~~~~~ 200 (307)
+++.+.+...
T Consensus 185 ~Il~~~~~~~ 194 (261)
T TIGR02881 185 EIAERMVKER 194 (261)
T ss_pred HHHHHHHHHc
Confidence 9998877543
No 90
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=87.67 E-value=2.1 Score=44.06 Aligned_cols=32 Identities=19% Similarity=0.205 Sum_probs=25.5
Q ss_pred ceeeccccHHHHHHHHhcCCceEEEEEcCchh
Q 041381 86 TIIGLESTFDKVWRCLVEGQFGIIGLYGMGGK 117 (307)
Q Consensus 86 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGi 117 (307)
.++||+.++.+++..|......-+.++|.+|+
T Consensus 174 ~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGv 205 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGV 205 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCCCCceEEEcCCCC
Confidence 48999999999999887664444557888887
No 91
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=86.38 E-value=15 Score=32.53 Aligned_cols=115 Identities=12% Similarity=0.129 Sum_probs=69.5
Q ss_pred CCeEEEEecCChh-hhhcc-cccceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChHHHHHHHHHH
Q 041381 156 NASKIVFTTRLVD-VCGLM-EAQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALITTSRAM 233 (307)
Q Consensus 156 ~gs~IivTtr~~~-v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ig~~L 233 (307)
+.+|+|+...+.+ +...+ +-.-.+++...+++|-...+.+.+-.++...+ .+++++|+++++|.---+..+-..+
T Consensus 156 ~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllmlE~~ 232 (351)
T KOG2035|consen 156 SNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLMLEAV 232 (351)
T ss_pred cCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHHHHH
Confidence 4566666543321 11111 22346788999999999999988866653332 7899999999988655444444444
Q ss_pred cCC----------CChhHHHHHHHHHhhccccCCCChhHHHHHHHHhhcCC
Q 041381 234 SSK----------KRPEERSYAIQMLRRSAYEFPGMEKEVFRLLKFSYDSL 274 (307)
Q Consensus 234 ~~~----------~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L 274 (307)
+-+ -..-+|+-++............ ...+..+-.-=|+-|
T Consensus 233 ~~~n~~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs-~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 233 RVNNEPFTANSQVIPKPDWEIYIQEIARVILKEQS-PAKLLEVRGRLYELL 282 (351)
T ss_pred HhccccccccCCCCCCccHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHH
Confidence 332 2456899888776655433222 225555555555544
No 92
>PRK10865 protein disaggregation chaperone; Provisional
Probab=85.82 E-value=3.7 Score=42.28 Aligned_cols=32 Identities=19% Similarity=0.200 Sum_probs=26.2
Q ss_pred ceeeccccHHHHHHHHhcCCceEEEEEcCchh
Q 041381 86 TIIGLESTFDKVWRCLVEGQFGIIGLYGMGGK 117 (307)
Q Consensus 86 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGi 117 (307)
.++||+.++.++++.|......-+.++|.+|+
T Consensus 179 ~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGv 210 (857)
T PRK10865 179 PVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGV 210 (857)
T ss_pred cCCCCHHHHHHHHHHHhcCCcCceEEECCCCC
Confidence 48999999999999888765555568888888
No 93
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=85.43 E-value=0.4 Score=38.95 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=19.9
Q ss_pred ceeeccccHHHHHHHHh---cCCceEEEEEcCchh
Q 041381 86 TIIGLESTFDKVWRCLV---EGQFGIIGLYGMGGK 117 (307)
Q Consensus 86 ~~vGr~~~~~~l~~~L~---~~~~~vi~I~G~gGi 117 (307)
.||||+++++++...|. ....+.+.|+|.+|+
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~ 35 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGS 35 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTS
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 37999999999999993 225789999999999
No 94
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=85.03 E-value=1.7 Score=43.95 Aligned_cols=110 Identities=15% Similarity=0.210 Sum_probs=64.6
Q ss_pred ceeeccccHHHHHHHHhcCCceEEEEEcCchh---------------------------------------------HHH
Q 041381 86 TIIGLESTFDKVWRCLVEGQFGIIGLYGMGGK---------------------------------------------ASG 120 (307)
Q Consensus 86 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGi---------------------------------------------~~~ 120 (307)
.++||+++++++++.|......-+.++|.+|+ .+.
T Consensus 187 ~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~r 266 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKR 266 (758)
T ss_pred cCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHH
Confidence 58999999999999888753334457888887 011
Q ss_pred HHHH---h-cCCeEEEEEeCcCCH----------HHHhhcCCCCCCCCCCCeEEEEecCChhhhhc-------cccccee
Q 041381 121 IFNL---L-SKMKFLLLLDDIWER----------IDLAKVGVPFPASSRNASKIVFTTRLVDVCGL-------MEAQKTF 179 (307)
Q Consensus 121 l~~~---l-~~kr~LlVlDdv~~~----------~~~~~l~~~~~~~~~~gs~IivTtr~~~v~~~-------~~~~~~~ 179 (307)
++.. + +.+..+|++|++... .+...+..+++. . ..-++|-+|........ ..--..+
T Consensus 267 l~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~-~-g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I 344 (758)
T PRK11034 267 FKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-S-GKIRVIGSTTYQEFSNIFEKDRALARRFQKI 344 (758)
T ss_pred HHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh-C-CCeEEEecCChHHHHHHhhccHHHHhhCcEE
Confidence 1221 2 234679999999632 122222222121 1 22345555544332111 1122478
Q ss_pred ecCCCCHHhHHHHHHHHh
Q 041381 180 KVECFADQDAWELFLKKV 197 (307)
Q Consensus 180 ~l~~L~~~e~~~Lf~~~~ 197 (307)
.+++++.++..+++....
T Consensus 345 ~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 345 DITEPSIEETVQIINGLK 362 (758)
T ss_pred EeCCCCHHHHHHHHHHHH
Confidence 999999999999998653
No 95
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=85.02 E-value=5.6 Score=35.23 Aligned_cols=70 Identities=6% Similarity=0.049 Sum_probs=41.8
Q ss_pred eEEEEEeCcCCH-----------HHHhhcCCCCCCCCCCCeEEEEecCChhhhhccc--------ccceeecCCCCHHhH
Q 041381 129 KFLLLLDDIWER-----------IDLAKVGVPFPASSRNASKIVFTTRLVDVCGLME--------AQKTFKVECFADQDA 189 (307)
Q Consensus 129 r~LlVlDdv~~~-----------~~~~~l~~~~~~~~~~gs~IivTtr~~~v~~~~~--------~~~~~~l~~L~~~e~ 189 (307)
.-+|++|++... .....+... +.....+.+||++|.....-.... ....+.+++++.+|-
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~-le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl 200 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQV-MENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAEL 200 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHH-HhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHH
Confidence 468899999621 122333222 333345667777765443221111 134688999999999
Q ss_pred HHHHHHHhCC
Q 041381 190 WELFLKKVGQ 199 (307)
Q Consensus 190 ~~Lf~~~~~~ 199 (307)
..++...+..
T Consensus 201 ~~I~~~~l~~ 210 (284)
T TIGR02880 201 LVIAGLMLKE 210 (284)
T ss_pred HHHHHHHHHH
Confidence 9998887643
No 96
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=84.42 E-value=9.9 Score=36.55 Aligned_cols=90 Identities=13% Similarity=0.099 Sum_probs=49.5
Q ss_pred CCeEEEEecCChhhhh-cc----cccceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCCh-HHHHHH
Q 041381 156 NASKIVFTTRLVDVCG-LM----EAQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLP-LALITT 229 (307)
Q Consensus 156 ~gs~IivTtr~~~v~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP-Lai~~i 229 (307)
.+..||.||...+... .+ .-...+.+...+.++-.++|..++......... ....+++.+.|.. -.+..+
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~----~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDV----DLKAVARRTPGFSGADLANL 267 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcch----hHHHHHHhCCCCCHHHHHHH
Confidence 3456666776543211 11 224578889999999999998877543311111 2347788887743 334333
Q ss_pred HH---H--HcCC---CChhHHHHHHHHH
Q 041381 230 SR---A--MSSK---KRPEERSYAIQML 249 (307)
Q Consensus 230 g~---~--L~~~---~~~~~w~~~l~~l 249 (307)
.. . .+.+ -+.+..+.+++..
T Consensus 268 ~~eA~~~a~~~~~~~i~~~~l~~a~~~~ 295 (495)
T TIGR01241 268 LNEAALLAARKNKTEITMNDIEEAIDRV 295 (495)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 21 1 1222 3556666666544
No 97
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=84.41 E-value=16 Score=34.55 Aligned_cols=46 Identities=9% Similarity=0.173 Sum_probs=29.2
Q ss_pred cceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCCh
Q 041381 176 QKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLP 223 (307)
Q Consensus 176 ~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 223 (307)
...+...|-+.++-.++|..+.-... ..+.+....+-++++|.|.-
T Consensus 317 P~~l~F~PYTk~qI~~Il~~rl~~~~--t~~~~~~Aie~~ArKvaa~S 362 (529)
T KOG2227|consen 317 PKLLVFPPYTKDQIVEILQQRLSEES--TSIFLNAAIELCARKVAAPS 362 (529)
T ss_pred CceeeecCCCHHHHHHHHHHHHhccc--ccccchHHHHHHHHHhccCc
Confidence 34677889999999999999875443 12223334455555554443
No 98
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=84.38 E-value=30 Score=31.35 Aligned_cols=91 Identities=11% Similarity=0.049 Sum_probs=55.6
Q ss_pred CCeEEEEEeCcCCHH--HHhhcCCCCCCCCCCCeEEEEecCCh-hhhhcc-cccceeecCCCCHHhHHHHHHHHhCCCCC
Q 041381 127 KMKFLLLLDDIWERI--DLAKVGVPFPASSRNASKIVFTTRLV-DVCGLM-EAQKTFKVECFADQDAWELFLKKVGQETL 202 (307)
Q Consensus 127 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~gs~IivTtr~~-~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 202 (307)
+++=.+|+|++.... ....+... +-....++.+|++|.+. .+...+ +-...+.+.+++.++..+.+....+..
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKt-LEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~~~-- 182 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKT-LEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSSAE-- 182 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHH-hcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhccC--
Confidence 456678899997642 22222211 22223456666666554 444333 335688999999999998888764321
Q ss_pred CCCCChHHHHHHHHHHCCCChHHH
Q 041381 203 ESHPDIPELAQTVAKECSGLPLAL 226 (307)
Q Consensus 203 ~~~~~l~~~~~~i~~~c~GlPLai 226 (307)
...+...+..++|.|+.+
T Consensus 183 ------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 183 ------ISEILTALRINYGRPLLA 200 (325)
T ss_pred ------hHHHHHHHHHcCCCHHHH
Confidence 123566788899999744
No 99
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=84.32 E-value=18 Score=32.88 Aligned_cols=92 Identities=10% Similarity=0.008 Sum_probs=55.8
Q ss_pred CCeEEEEEeCcCCHH--HHhhcCCCCCCCCCCCeEEEEecCC-hhhhhcc-cccceeecCCCCHHhHHHHHHHHhCCCCC
Q 041381 127 KMKFLLLLDDIWERI--DLAKVGVPFPASSRNASKIVFTTRL-VDVCGLM-EAQKTFKVECFADQDAWELFLKKVGQETL 202 (307)
Q Consensus 127 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~gs~IivTtr~-~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 202 (307)
+++-.+|+|+++... .-..+... +-....++-+|++|.+ ..+...+ +-...+.+.+++.++..+.+....+..
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKt-LEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~~~-- 183 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKT-LEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREVTMS-- 183 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHH-hcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHccCCC--
Confidence 566688899887532 22222111 2122345666666655 4455433 335578999999999888886543211
Q ss_pred CCCCChHHHHHHHHHHCCCChHHHH
Q 041381 203 ESHPDIPELAQTVAKECSGLPLALI 227 (307)
Q Consensus 203 ~~~~~l~~~~~~i~~~c~GlPLai~ 227 (307)
.+.+..++..++|.|..+.
T Consensus 184 ------~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 184 ------QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ------HHHHHHHHHHcCCCHHHHH
Confidence 2346788999999997543
No 100
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=84.26 E-value=22 Score=32.81 Aligned_cols=141 Identities=13% Similarity=0.167 Sum_probs=80.7
Q ss_pred CCceeeccccHHHHHHHHhc---C-CceEEEEEcCchh------------------------------------------
Q 041381 84 QPTIIGLESTFDKVWRCLVE---G-QFGIIGLYGMGGK------------------------------------------ 117 (307)
Q Consensus 84 ~~~~vGr~~~~~~l~~~L~~---~-~~~vi~I~G~gGi------------------------------------------ 117 (307)
+..+.+||++++++...|.. + ...-+.|+|..|+
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHH
Confidence 34589999999999988763 2 2333778888887
Q ss_pred ---------------HHHHHHHhc--CCeEEEEEeCcCCHH-----HHhhcCCCCCCCCCCCeE--EEEecCChhhhhcc
Q 041381 118 ---------------ASGIFNLLS--KMKFLLLLDDIWERI-----DLAKVGVPFPASSRNASK--IVFTTRLVDVCGLM 173 (307)
Q Consensus 118 ---------------~~~l~~~l~--~kr~LlVlDdv~~~~-----~~~~l~~~~~~~~~~gs~--IivTtr~~~v~~~~ 173 (307)
.+.+.+.+. ++.+++|||++.... .+-.|... +... .++ +|..+-+......+
T Consensus 96 ~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~--~~~~-~~~v~vi~i~n~~~~~~~l 172 (366)
T COG1474 96 KLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRA--PGEN-KVKVSIIAVSNDDKFLDYL 172 (366)
T ss_pred HcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhh--cccc-ceeEEEEEEeccHHHHHHh
Confidence 333444443 478899999997532 22233221 1111 333 34444443332222
Q ss_pred --------cccceeecCCCCHHhHHHHHHHHh---CCCCCCCCCChHHHHHHHHHHCC-CChHHHHHH
Q 041381 174 --------EAQKTFKVECFADQDAWELFLKKV---GQETLESHPDIPELAQTVAKECS-GLPLALITT 229 (307)
Q Consensus 174 --------~~~~~~~l~~L~~~e~~~Lf~~~~---~~~~~~~~~~l~~~~~~i~~~c~-GlPLai~~i 229 (307)
+.. .+..+|-+.+|-...+..++ +... ..++...+++..++..-+ -.-.|+.++
T Consensus 173 d~rv~s~l~~~-~I~F~pY~a~el~~Il~~R~~~~~~~~-~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 173 DPRVKSSLGPS-EIVFPPYTAEELYDILRERVEEGFSAG-VIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhhhccCcc-eeeeCCCCHHHHHHHHHHHHHhhccCC-CcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 222 36788899999999998876 3333 334444444444444444 445555554
No 101
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=83.74 E-value=7.5 Score=35.24 Aligned_cols=94 Identities=4% Similarity=0.012 Sum_probs=56.5
Q ss_pred CeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEEEecCCh-hhhhcc-cccceeecCCCCHHhHHHHHHHHhCCCCCC
Q 041381 128 MKFLLLLDDIWER--IDLAKVGVPFPASSRNASKIVFTTRLV-DVCGLM-EAQKTFKVECFADQDAWELFLKKVGQETLE 203 (307)
Q Consensus 128 kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IivTtr~~-~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~ 203 (307)
++-++|+|++... .....+... +-....++.+|+||.+. .+...+ +-...+.+.+++.++..+.+.......
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~-LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~--- 181 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKS-LEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPES--- 181 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHH-HhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccC---
Confidence 3444567998753 223332222 22223456677777665 343332 335678999999999998887754211
Q ss_pred CCCChHHHHHHHHHHCCCChHHHHHH
Q 041381 204 SHPDIPELAQTVAKECSGLPLALITT 229 (307)
Q Consensus 204 ~~~~l~~~~~~i~~~c~GlPLai~~i 229 (307)
..+.+..++..++|.|+.+..+
T Consensus 182 ----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 ----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ----ChHHHHHHHHHcCCCHHHHHHH
Confidence 1344567889999999865544
No 102
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=83.71 E-value=23 Score=33.02 Aligned_cols=115 Identities=21% Similarity=0.083 Sum_probs=64.4
Q ss_pred EEEEeCcCCHH---HH-hhcCCCCCC-CCCCCeEEEEecCChh---------hhhcccccceeecCCCCHHhHHHHHHHH
Q 041381 131 LLLLDDIWERI---DL-AKVGVPFPA-SSRNASKIVFTTRLVD---------VCGLMEAQKTFKVECFADQDAWELFLKK 196 (307)
Q Consensus 131 LlVlDdv~~~~---~~-~~l~~~~~~-~~~~gs~IivTtr~~~---------v~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 196 (307)
+|++||+.... .+ +.+... +. ....|..+|+||.... +...+.....+.+++.+.++-..++.+.
T Consensus 202 lLiiDDi~~l~~~~~~~~~l~~~-~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 202 LLLIDDIQFLAGKERTQEEFFHT-FNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred EEEEehhhhhcCCHHHHHHHHHH-HHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 78999996421 11 111111 10 0123456888886421 2222333457899999999999999998
Q ss_pred hCCCCCCCCCChHHHHHHHHHHCCCChHHHHH----HHH---HHcCCCChhHHHHHHHHH
Q 041381 197 VGQETLESHPDIPELAQTVAKECSGLPLALIT----TSR---AMSSKKRPEERSYAIQML 249 (307)
Q Consensus 197 ~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~----ig~---~L~~~~~~~~w~~~l~~l 249 (307)
+....... -.+....|++.+.|..-.+.- +.. .....-+.+..+.++..+
T Consensus 281 ~~~~~~~l---~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 281 AEEEGLEL---PDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEALKDL 337 (405)
T ss_pred HHHcCCCC---CHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 86543222 256778888888876554332 221 111224556666666544
No 103
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=83.23 E-value=10 Score=35.39 Aligned_cols=72 Identities=22% Similarity=0.184 Sum_probs=45.5
Q ss_pred EEEEeCcCCH---H----HHhhcCCCCCCCCCCCeEEEEecCCh---------hhhhcccccceeecCCCCHHhHHHHHH
Q 041381 131 LLLLDDIWER---I----DLAKVGVPFPASSRNASKIVFTTRLV---------DVCGLMEAQKTFKVECFADQDAWELFL 194 (307)
Q Consensus 131 LlVlDdv~~~---~----~~~~l~~~~~~~~~~gs~IivTtr~~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf~ 194 (307)
++++||++-. + ..-.+... +.. .|..||+|++.. .+...++.+-.+.+.+++.+....++.
T Consensus 178 lllIDDiq~l~gk~~~qeefFh~FN~-l~~--~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 178 LLLIDDIQFLAGKERTQEEFFHTFNA-LLE--NGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred eeeechHhHhcCChhHHHHHHHHHHH-HHh--cCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 8889999642 1 11122222 222 234899999653 233344556789999999999999999
Q ss_pred HHhCCCCCCCC
Q 041381 195 KKVGQETLESH 205 (307)
Q Consensus 195 ~~~~~~~~~~~ 205 (307)
+.+...+...+
T Consensus 255 kka~~~~~~i~ 265 (408)
T COG0593 255 KKAEDRGIEIP 265 (408)
T ss_pred HHHHhcCCCCC
Confidence 98755543333
No 104
>CHL00181 cbbX CbbX; Provisional
Probab=82.85 E-value=15 Score=32.66 Aligned_cols=70 Identities=6% Similarity=0.058 Sum_probs=42.4
Q ss_pred eEEEEEeCcCCH-----------HHHhhcCCCCCCCCCCCeEEEEecCChhhhhcc--------cccceeecCCCCHHhH
Q 041381 129 KFLLLLDDIWER-----------IDLAKVGVPFPASSRNASKIVFTTRLVDVCGLM--------EAQKTFKVECFADQDA 189 (307)
Q Consensus 129 r~LlVlDdv~~~-----------~~~~~l~~~~~~~~~~gs~IivTtr~~~v~~~~--------~~~~~~~l~~L~~~e~ 189 (307)
.-+|++|++... +....+... +.....+..||+++....+.... .....+.+++++.+|-
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~-me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el 201 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQV-MENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEEL 201 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHH-HhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHH
Confidence 358899999531 222233222 33334557787887654432211 1234788999999999
Q ss_pred HHHHHHHhCC
Q 041381 190 WELFLKKVGQ 199 (307)
Q Consensus 190 ~~Lf~~~~~~ 199 (307)
.+++...+..
T Consensus 202 ~~I~~~~l~~ 211 (287)
T CHL00181 202 LQIAKIMLEE 211 (287)
T ss_pred HHHHHHHHHH
Confidence 9998887744
No 105
>CHL00176 ftsH cell division protein; Validated
Probab=81.60 E-value=24 Score=35.19 Aligned_cols=92 Identities=12% Similarity=0.176 Sum_probs=54.1
Q ss_pred cCCeEEEEEeCcCCH------------H----HHhhcCCCCCC--CCCCCeEEEEecCChhhhh--cc---cccceeecC
Q 041381 126 SKMKFLLLLDDIWER------------I----DLAKVGVPFPA--SSRNASKIVFTTRLVDVCG--LM---EAQKTFKVE 182 (307)
Q Consensus 126 ~~kr~LlVlDdv~~~------------~----~~~~l~~~~~~--~~~~gs~IivTtr~~~v~~--~~---~~~~~~~l~ 182 (307)
....++|++|+++.. . .+..+... +. ....+..||.||...+... .. .-...+.+.
T Consensus 273 ~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~-~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~ 351 (638)
T CHL00176 273 ENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTE-MDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVS 351 (638)
T ss_pred cCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhh-hccccCCCCeeEEEecCchHhhhhhhhccccCceEEEEC
Confidence 456789999999532 1 12233222 11 1234566777776644322 11 123577888
Q ss_pred CCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCC
Q 041381 183 CFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGL 222 (307)
Q Consensus 183 ~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~Gl 222 (307)
..+.++-.++++.++..... ........+++.+.|.
T Consensus 352 lPd~~~R~~IL~~~l~~~~~----~~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 352 LPDREGRLDILKVHARNKKL----SPDVSLELIARRTPGF 387 (638)
T ss_pred CCCHHHHHHHHHHHHhhccc----chhHHHHHHHhcCCCC
Confidence 89999999999888755321 1123456778888773
No 106
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=80.35 E-value=8.1 Score=36.50 Aligned_cols=64 Identities=11% Similarity=0.188 Sum_probs=39.5
Q ss_pred CCeEEEEecCChhhhhc--c---cccceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCCh
Q 041381 156 NASKIVFTTRLVDVCGL--M---EAQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLP 223 (307)
Q Consensus 156 ~gs~IivTtr~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 223 (307)
.+..||.||...+.... . .....+.+...+.++..++|..+..........++ ..++..+.|+-
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl----~~la~~t~g~s 389 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDL----EEFIMAKDELS 389 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCH----HHHHHhcCCCC
Confidence 35678888876554322 1 12457889999999999999987754432223333 44455555543
No 107
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=79.38 E-value=36 Score=33.01 Aligned_cols=104 Identities=14% Similarity=0.149 Sum_probs=64.5
Q ss_pred HHhcCCeEEEEEeCcCCHHHHhhcCCCC--------------CCCCCCCeEEEEecCChhhhhcccc----cceeecCCC
Q 041381 123 NLLSKMKFLLLLDDIWERIDLAKVGVPF--------------PASSRNASKIVFTTRLVDVCGLMEA----QKTFKVECF 184 (307)
Q Consensus 123 ~~l~~kr~LlVlDdv~~~~~~~~l~~~~--------------~~~~~~gs~IivTtr~~~v~~~~~~----~~~~~l~~L 184 (307)
+.-+..--.||+||+...-+|..++..| .|..++.--|+-||....+...|+- ...|.++.+
T Consensus 593 DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl 672 (744)
T KOG0741|consen 593 DAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNL 672 (744)
T ss_pred HhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCcc
Confidence 3345566789999998776666554431 2333444456667877788777753 347888888
Q ss_pred CH-HhHHHHHHHHh-CCCCCCCCCChHHHHHHHHHHCCCChHHHHHHHHHH
Q 041381 185 AD-QDAWELFLKKV-GQETLESHPDIPELAQTVAKECSGLPLALITTSRAM 233 (307)
Q Consensus 185 ~~-~e~~~Lf~~~~-~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ig~~L 233 (307)
+. ++..+.+...- +. +.+...++.+.+.+| .-.+|+.+-.++
T Consensus 673 ~~~~~~~~vl~~~n~fs-----d~~~~~~~~~~~~~~--~~vgIKklL~li 716 (744)
T KOG0741|consen 673 TTGEQLLEVLEELNIFS-----DDEVRAIAEQLLSKK--VNVGIKKLLMLI 716 (744)
T ss_pred CchHHHHHHHHHccCCC-----cchhHHHHHHHhccc--cchhHHHHHHHH
Confidence 77 66666666542 32 345667778888777 334455444444
No 108
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=79.23 E-value=12 Score=35.43 Aligned_cols=88 Identities=17% Similarity=0.053 Sum_probs=52.1
Q ss_pred eEEEEEeCcCCH-------HHHhhcCCCCCCCCCCCeEEEEecCC-hhh--------hhcccccceeecCCCCHHhHHHH
Q 041381 129 KFLLLLDDIWER-------IDLAKVGVPFPASSRNASKIVFTTRL-VDV--------CGLMEAQKTFKVECFADQDAWEL 192 (307)
Q Consensus 129 r~LlVlDdv~~~-------~~~~~l~~~~~~~~~~gs~IivTtr~-~~v--------~~~~~~~~~~~l~~L~~~e~~~L 192 (307)
.-+|++||+... ..+..+... +. ..|..||+||.. ..- ...+..+..+.+++.+.++-.++
T Consensus 195 ~dvLlIDDi~~l~~~~~~q~elf~~~n~-l~--~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~I 271 (440)
T PRK14088 195 VDVLLIDDVQFLIGKTGVQTELFHTFNE-LH--DSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKI 271 (440)
T ss_pred CCEEEEechhhhcCcHHHHHHHHHHHHH-HH--HcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHH
Confidence 348999999742 112122111 11 224568888753 221 11223445788999999999999
Q ss_pred HHHHhCCCCCCCCCChHHHHHHHHHHCCCC
Q 041381 193 FLKKVGQETLESHPDIPELAQTVAKECSGL 222 (307)
Q Consensus 193 f~~~~~~~~~~~~~~l~~~~~~i~~~c~Gl 222 (307)
+++.+....... -.+...-|++.+.|.
T Consensus 272 L~~~~~~~~~~l---~~ev~~~Ia~~~~~~ 298 (440)
T PRK14088 272 ARKMLEIEHGEL---PEEVLNFVAENVDDN 298 (440)
T ss_pred HHHHHHhcCCCC---CHHHHHHHHhccccC
Confidence 998875443222 245677777777764
No 109
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=79.15 E-value=20 Score=34.05 Aligned_cols=113 Identities=19% Similarity=0.080 Sum_probs=65.0
Q ss_pred EEEEeCcCCH---H----HHhhcCCCCCCCCCCCeEEEEecCChh---------hhhcccccceeecCCCCHHhHHHHHH
Q 041381 131 LLLLDDIWER---I----DLAKVGVPFPASSRNASKIVFTTRLVD---------VCGLMEAQKTFKVECFADQDAWELFL 194 (307)
Q Consensus 131 LlVlDdv~~~---~----~~~~l~~~~~~~~~~gs~IivTtr~~~---------v~~~~~~~~~~~l~~L~~~e~~~Lf~ 194 (307)
+|++||+... . .+-.+... +. ..|..||+||.... +...+.....+.+++.+.++-..++.
T Consensus 214 lLiiDDi~~l~~~~~~~~~l~~~~n~-l~--~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~ 290 (450)
T PRK00149 214 VLLIDDIQFLAGKERTQEEFFHTFNA-LH--EAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILK 290 (450)
T ss_pred EEEEehhhhhcCCHHHHHHHHHHHHH-HH--HCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHH
Confidence 8899999642 1 11111111 11 23455888886531 12233444578999999999999999
Q ss_pred HHhCCCCCCCCCChHHHHHHHHHHCCCChHHHH----HHHH---HHcCCCChhHHHHHHHHH
Q 041381 195 KKVGQETLESHPDIPELAQTVAKECSGLPLALI----TTSR---AMSSKKRPEERSYAIQML 249 (307)
Q Consensus 195 ~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~----~ig~---~L~~~~~~~~w~~~l~~l 249 (307)
+.+...... --.+...-|++.+.|..-.+. .+.. .....-+.+..+.++..+
T Consensus 291 ~~~~~~~~~---l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 291 KKAEEEGID---LPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHHHcCCC---CCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 987543311 224567888888887755433 2221 112224666666666654
No 110
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=78.80 E-value=43 Score=29.02 Aligned_cols=86 Identities=21% Similarity=0.281 Sum_probs=50.1
Q ss_pred CceeeccccHHHHHHH---HhcC-CceEEEEEcCchh------------------------------HHHHHHHhc--CC
Q 041381 85 PTIIGLESTFDKVWRC---LVEG-QFGIIGLYGMGGK------------------------------ASGIFNLLS--KM 128 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~---L~~~-~~~vi~I~G~gGi------------------------------~~~l~~~l~--~k 128 (307)
..++|.|..++.|++- +..+ ...-+-++|..|. ...|.+.++ ..
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l~~~l~~~~~ 106 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPELLDLLRDRPY 106 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHHHHHHhcCCC
Confidence 4689988888877653 3333 4455667888887 444555554 36
Q ss_pred eEEEEEeCcCC---HHH---HhhcCCCCCCCCCCCeEEEEecCChhhh
Q 041381 129 KFLLLLDDIWE---RID---LAKVGVPFPASSRNASKIVFTTRLVDVC 170 (307)
Q Consensus 129 r~LlVlDdv~~---~~~---~~~l~~~~~~~~~~gs~IivTtr~~~v~ 170 (307)
||+|.+||+.= ... +..+....+-....+..|..||...++.
T Consensus 107 kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 107 KFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred CEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 89999999852 222 3333211122233455666777655543
No 111
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=78.45 E-value=3.4 Score=35.45 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=28.8
Q ss_pred CceeeccccHHHHHHHHhcCCceEEEEEcCchh
Q 041381 85 PTIIGLESTFDKVWRCLVEGQFGIIGLYGMGGK 117 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGi 117 (307)
.++||-++.++.+.-.-.+++.+-+.|.|++|+
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~ 59 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGT 59 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCC
Confidence 468999999998887777889999999999999
No 112
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=77.99 E-value=46 Score=30.03 Aligned_cols=91 Identities=10% Similarity=0.018 Sum_probs=55.3
Q ss_pred CCeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEEEecCC-hhhhhcc-cccceeecCCCCHHhHHHHHHHHhCCCCC
Q 041381 127 KMKFLLLLDDIWER--IDLAKVGVPFPASSRNASKIVFTTRL-VDVCGLM-EAQKTFKVECFADQDAWELFLKKVGQETL 202 (307)
Q Consensus 127 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IivTtr~-~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 202 (307)
+.+=.+|+|++... ...+.+... +-....++.+|++|.+ ..+...+ +-...+.+.+++.++..+.+... +.
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKt-LEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~-~~--- 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKT-LEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQ-GI--- 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHH-hcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHc-CC---
Confidence 34557888988753 223333222 2222345656655554 4454443 33568899999999998888653 11
Q ss_pred CCCCChHHHHHHHHHHCCCChHHHHHH
Q 041381 203 ESHPDIPELAQTVAKECSGLPLALITT 229 (307)
Q Consensus 203 ~~~~~l~~~~~~i~~~c~GlPLai~~i 229 (307)
+ .+..++..++|.|+.+..+
T Consensus 182 --~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 182 --T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred --c-----hHHHHHHHcCCCHHHHHHH
Confidence 1 1356788999999977554
No 113
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=76.85 E-value=11 Score=35.93 Aligned_cols=99 Identities=9% Similarity=0.054 Sum_probs=61.6
Q ss_pred EEEEEeCcCCH---HHH-hhcCCCCCC-CCCCCeEEEEecCCh---------hhhhcccccceeecCCCCHHhHHHHHHH
Q 041381 130 FLLLLDDIWER---IDL-AKVGVPFPA-SSRNASKIVFTTRLV---------DVCGLMEAQKTFKVECFADQDAWELFLK 195 (307)
Q Consensus 130 ~LlVlDdv~~~---~~~-~~l~~~~~~-~~~~gs~IivTtr~~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf~~ 195 (307)
-+||+||+... ..+ +.+..- +. ....|..||+||... .+...+..+-.+.+++++.++-.+++.+
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l-~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTI-FNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHH-HHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 38899999642 112 122111 11 012345788887643 2223334556788999999999999999
Q ss_pred HhCCCCCCCCCChHHHHHHHHHHCCCChHHHHHHH
Q 041381 196 KVGQETLESHPDIPELAQTVAKECSGLPLALITTS 230 (307)
Q Consensus 196 ~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ig 230 (307)
.+...+.. ..--.+...-|++.++|.|-.+.-+.
T Consensus 287 ~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 287 EIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 87543211 12235678889999999988766555
No 114
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=76.75 E-value=6.4 Score=36.03 Aligned_cols=29 Identities=14% Similarity=0.236 Sum_probs=24.0
Q ss_pred eccccHHHHHHHHhcCCceEEEEEcCchh
Q 041381 89 GLESTFDKVWRCLVEGQFGIIGLYGMGGK 117 (307)
Q Consensus 89 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGi 117 (307)
+|+.+..--+++|+++++..|.+.|.+|.
T Consensus 228 prn~eQ~~ALdlLld~dI~lV~L~G~AGt 256 (436)
T COG1875 228 PRNAEQRVALDLLLDDDIDLVSLGGKAGT 256 (436)
T ss_pred cccHHHHHHHHHhcCCCCCeEEeeccCCc
Confidence 36666677778899999999999999888
No 115
>PF14516 AAA_35: AAA-like domain
Probab=75.71 E-value=62 Score=29.28 Aligned_cols=54 Identities=11% Similarity=0.107 Sum_probs=42.8
Q ss_pred cceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChHHHHHHHHHHcCC
Q 041381 176 QKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALITTSRAMSSK 236 (307)
Q Consensus 176 ~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ig~~L~~~ 236 (307)
...+.|++++.+|...|..++-..-. ....++|...+||+|.-+..++..+..+
T Consensus 193 g~~i~L~~Ft~~ev~~L~~~~~~~~~-------~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 193 GQPIELPDFTPEEVQELAQRYGLEFS-------QEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred ccceeCCCCCHHHHHHHHHhhhccCC-------HHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 45789999999999999887632211 2238999999999999999999999763
No 116
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=74.75 E-value=15 Score=34.79 Aligned_cols=87 Identities=9% Similarity=0.031 Sum_probs=49.6
Q ss_pred EEEEEeCcCCHH-------HHhhcCCCCCCCCCCCeEEEEecCCh---------hhhhcccccceeecCCCCHHhHHHHH
Q 041381 130 FLLLLDDIWERI-------DLAKVGVPFPASSRNASKIVFTTRLV---------DVCGLMEAQKTFKVECFADQDAWELF 193 (307)
Q Consensus 130 ~LlVlDdv~~~~-------~~~~l~~~~~~~~~~gs~IivTtr~~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf 193 (307)
-++++||+.... .+..+... +. ..|..||+||... .+...+..+..+.+.+++.++-..++
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~-l~--~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNS-LH--TEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHH-HH--HCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHH
Confidence 378899986431 11111111 11 1345788888652 12222344568899999999999999
Q ss_pred HHHhCCCCCCCCCChHHHHHHHHHHCCCC
Q 041381 194 LKKVGQETLESHPDIPELAQTVAKECSGL 222 (307)
Q Consensus 194 ~~~~~~~~~~~~~~l~~~~~~i~~~c~Gl 222 (307)
.+.+.......+ .+...-|+..+.|.
T Consensus 281 ~~k~~~~~~~l~---~evl~~la~~~~~d 306 (445)
T PRK12422 281 ERKAEALSIRIE---ETALDFLIEALSSN 306 (445)
T ss_pred HHHHHHcCCCCC---HHHHHHHHHhcCCC
Confidence 988754432222 34445566666543
No 117
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=73.43 E-value=8.1 Score=32.70 Aligned_cols=28 Identities=25% Similarity=0.359 Sum_probs=18.5
Q ss_pred CceEEEEEcCchh-----HHHHHHHhcCCeEEE
Q 041381 105 QFGIIGLYGMGGK-----ASGIFNLLSKMKFLL 132 (307)
Q Consensus 105 ~~~vi~I~G~gGi-----~~~l~~~l~~kr~Ll 132 (307)
.+.++.|.||||. .+.-.+.+++.+.||
T Consensus 85 ~~d~ivIAGMGG~lI~~ILee~~~~l~~~~rlI 117 (226)
T COG2384 85 EIDVIVIAGMGGTLIREILEEGKEKLKGVERLI 117 (226)
T ss_pred CcCEEEEeCCcHHHHHHHHHHhhhhhcCcceEE
Confidence 5889999999998 333444555544443
No 118
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=72.17 E-value=36 Score=30.82 Aligned_cols=68 Identities=3% Similarity=-0.024 Sum_probs=40.5
Q ss_pred CCeEEEEEeCcCCHH--HHhhcCCCCCCCCCCCeEEEEecCCh-hhhhcc-cccceeecCCCCHHhHHHHHHH
Q 041381 127 KMKFLLLLDDIWERI--DLAKVGVPFPASSRNASKIVFTTRLV-DVCGLM-EAQKTFKVECFADQDAWELFLK 195 (307)
Q Consensus 127 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~gs~IivTtr~~-~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~ 195 (307)
+.+=++|+|++.... ..+.+... +-....++.+|++|.+. .+...+ +-...+++.+++.++..+.+..
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~-LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKF-LEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHH-hcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 445578889886532 22333222 22224566666666553 343333 3356889999999998777765
No 119
>PTZ00202 tuzin; Provisional
Probab=69.81 E-value=5.8 Score=37.55 Aligned_cols=34 Identities=18% Similarity=0.098 Sum_probs=28.7
Q ss_pred CCceeeccccHHHHHHHHhcC---CceEEEEEcCchh
Q 041381 84 QPTIIGLESTFDKVWRCLVEG---QFGIIGLYGMGGK 117 (307)
Q Consensus 84 ~~~~vGr~~~~~~l~~~L~~~---~~~vi~I~G~gGi 117 (307)
.+.|+||+.+...+...|... ..+++.|.|++|.
T Consensus 261 ~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~ 297 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGC 297 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCC
Confidence 578999999999999988643 3458999999998
No 120
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=67.98 E-value=18 Score=27.00 Aligned_cols=11 Identities=27% Similarity=0.504 Sum_probs=9.7
Q ss_pred eEEEEEeCcCC
Q 041381 129 KFLLLLDDIWE 139 (307)
Q Consensus 129 r~LlVlDdv~~ 139 (307)
+.+|++||++.
T Consensus 59 ~~vl~iDe~d~ 69 (132)
T PF00004_consen 59 PCVLFIDEIDK 69 (132)
T ss_dssp SEEEEEETGGG
T ss_pred ceeeeeccchh
Confidence 79999999964
No 121
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=67.10 E-value=40 Score=30.46 Aligned_cols=90 Identities=11% Similarity=0.096 Sum_probs=55.5
Q ss_pred CCeEEEEEeCcCCHH-----HH-hhcCCCCCCCCCCCeEEEEecCC-hhhhhcc-cccceeecCCCCHHhHHHHHHHHhC
Q 041381 127 KMKFLLLLDDIWERI-----DL-AKVGVPFPASSRNASKIVFTTRL-VDVCGLM-EAQKTFKVECFADQDAWELFLKKVG 198 (307)
Q Consensus 127 ~kr~LlVlDdv~~~~-----~~-~~l~~~~~~~~~~gs~IivTtr~-~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~ 198 (307)
+++-++|+|++.... .+ ..+..| ..++.+|++|.+ ..+...+ +-...+.+.+++.++..+.+... +
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEP-----p~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~-~ 185 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEP-----SPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQ-G 185 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCC-----CCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHc-C
Confidence 345678888887532 22 222222 345656666654 4444333 33567899999999988888653 2
Q ss_pred CCCCCCCCChHHHHHHHHHHCCCChHHHHHHH
Q 041381 199 QETLESHPDIPELAQTVAKECSGLPLALITTS 230 (307)
Q Consensus 199 ~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ig 230 (307)
.. ...++.++..++|.|+.+..+.
T Consensus 186 ~~--------~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 186 VS--------ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred CC--------hHHHHHHHHHcCCCHHHHHHHh
Confidence 11 2336778999999999765443
No 122
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=66.66 E-value=36 Score=31.03 Aligned_cols=91 Identities=13% Similarity=0.097 Sum_probs=53.5
Q ss_pred CCeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEEEecCC-hhhhhcc-cccceeecCCCCHHhHHHHHHHHhCCCCC
Q 041381 127 KMKFLLLLDDIWER--IDLAKVGVPFPASSRNASKIVFTTRL-VDVCGLM-EAQKTFKVECFADQDAWELFLKKVGQETL 202 (307)
Q Consensus 127 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IivTtr~-~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 202 (307)
+++-++|+|+++.. ...+.+... +-.-.+++.+|++|.+ ..+...+ +-...+.+.+++.++..+.+... +..
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKt-LEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~~~-- 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKT-LEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-GVA-- 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHH-hcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-CCC--
Confidence 34557788888753 233333222 2222445555555544 5554433 33568899999999998888764 211
Q ss_pred CCCCChHHHHHHHHHHCCCChHHHHHH
Q 041381 203 ESHPDIPELAQTVAKECSGLPLALITT 229 (307)
Q Consensus 203 ~~~~~l~~~~~~i~~~c~GlPLai~~i 229 (307)
. ...++..++|.|+.+..+
T Consensus 207 ----~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 207 ----D----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred ----h----HHHHHHHcCCCHHHHHHH
Confidence 1 233577889999855443
No 123
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=66.21 E-value=7.7 Score=35.91 Aligned_cols=48 Identities=21% Similarity=0.335 Sum_probs=37.0
Q ss_pred ccHHHHHHHHhcCCceEE--EEEcCchh-------HHHHHHHhcCCeEEEEEeCcCC
Q 041381 92 STFDKVWRCLVEGQFGII--GLYGMGGK-------ASGIFNLLSKMKFLLLLDDIWE 139 (307)
Q Consensus 92 ~~~~~l~~~L~~~~~~vi--~I~G~gGi-------~~~l~~~l~~kr~LlVlDdv~~ 139 (307)
.+.+.+...+.++...|| +|.|.||+ .+.+++.-..+..|+|+|.|..
T Consensus 172 nDi~al~~ai~~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQt 228 (404)
T COG4992 172 NDIEALEAAIDEDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQT 228 (404)
T ss_pred CCHHHHHHHhccCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEecccc
Confidence 355777776666533333 89999999 7778888888999999999975
No 124
>PRK09533 bifunctional transaldolase/phosoglucose isomerase; Validated
Probab=65.03 E-value=25 Score=36.58 Aligned_cols=47 Identities=17% Similarity=0.188 Sum_probs=30.5
Q ss_pred cHHHHHHHHhcCCceEEEEEcCchh---HHHHHHHhc---CCeEEEEEeCcCC
Q 041381 93 TFDKVWRCLVEGQFGIIGLYGMGGK---ASGIFNLLS---KMKFLLLLDDIWE 139 (307)
Q Consensus 93 ~~~~l~~~L~~~~~~vi~I~G~gGi---~~~l~~~l~---~kr~LlVlDdv~~ 139 (307)
.++++.+.+...+...|.++||||. .+.+...+. +...+.++|++..
T Consensus 442 ~i~~fa~~Ir~~~~d~VVviGIGGS~LG~~~l~~~l~~~~~~p~l~~ldn~DP 494 (948)
T PRK09533 442 EYEAFAEEVRAEGFTDAVVLGMGGSSLGPEVLAETFGQRDGFPKLHVLDSTDP 494 (948)
T ss_pred HHHHHHHHHhcCCCCEEEEEccChhHHHHHHHHHHHHhcCCCceEEEEeCCCh
Confidence 3444555555556888999999997 444555443 2355778898853
No 125
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=63.13 E-value=73 Score=32.36 Aligned_cols=134 Identities=14% Similarity=0.131 Sum_probs=75.5
Q ss_pred CceeeccccHHHHHHHHhc-------------CCceEEEEEcCchh---------------------------------H
Q 041381 85 PTIIGLESTFDKVWRCLVE-------------GQFGIIGLYGMGGK---------------------------------A 118 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGi---------------------------------~ 118 (307)
.++.|.+..++.|.+.+.- ...+-+.++|..|. .
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese 532 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESE 532 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHH
Confidence 3467777777777665531 12345788999998 1
Q ss_pred HHHHHHh----cCCeEEEEEeCcCCHH--------------HHhhcCCCCCC--CCCCCeEEEEecCChhhhhc--c---
Q 041381 119 SGIFNLL----SKMKFLLLLDDIWERI--------------DLAKVGVPFPA--SSRNASKIVFTTRLVDVCGL--M--- 173 (307)
Q Consensus 119 ~~l~~~l----~~kr~LlVlDdv~~~~--------------~~~~l~~~~~~--~~~~gs~IivTtr~~~v~~~--~--- 173 (307)
+.+++.+ +...++|++|+++... ....+... +. ....+.-||.||...+.... .
T Consensus 533 ~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~-ldg~~~~~~v~vI~aTn~~~~ld~allRpg 611 (733)
T TIGR01243 533 KAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTE-MDGIQELSNVVVIAATNRPDILDPALLRPG 611 (733)
T ss_pred HHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHH-hhcccCCCCEEEEEeCCChhhCCHhhcCCC
Confidence 2222222 3456899999985320 11222111 11 12334567777766544321 1
Q ss_pred cccceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCCh
Q 041381 174 EAQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLP 223 (307)
Q Consensus 174 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 223 (307)
.-...+.+...+.++-.++|+.+..........+ ...+++.+.|.-
T Consensus 612 Rfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 612 RFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred ccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 2345788899999999999987664433222223 355667777754
No 126
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=61.69 E-value=76 Score=31.67 Aligned_cols=33 Identities=15% Similarity=0.086 Sum_probs=26.5
Q ss_pred CceeeccccHHHHHHHHhcC-----CceEEEEEcCchh
Q 041381 85 PTIIGLESTFDKVWRCLVEG-----QFGIIGLYGMGGK 117 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~~~-----~~~vi~I~G~gGi 117 (307)
.+++|-++.++++..+|... ...++.++|..|.
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~Gs 121 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGC 121 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCC
Confidence 45889988999999888753 2457999999998
No 127
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=61.11 E-value=46 Score=26.48 Aligned_cols=70 Identities=11% Similarity=0.172 Sum_probs=39.1
Q ss_pred cHHHHHHHHhcC-CceEEEEEcCchh---HHHHHHHhcC----CeEEEEEeCcCCHHHHhhcCCCCCCCCCCCeEEEEec
Q 041381 93 TFDKVWRCLVEG-QFGIIGLYGMGGK---ASGIFNLLSK----MKFLLLLDDIWERIDLAKVGVPFPASSRNASKIVFTT 164 (307)
Q Consensus 93 ~~~~l~~~L~~~-~~~vi~I~G~gGi---~~~l~~~l~~----kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IivTt 164 (307)
.++++.+.+.++ +..-|.++|+||. .+.+.+.+.+ ..-+.++|+.+... ...+... + ...++-+|+.|
T Consensus 6 ~i~~~~~~i~~~~~~~~iv~~GiGGS~lg~~~~~~~~~~~~~~~~~i~~~~~~D~~~-~~~~~~~-~--~~~~tlvi~iS 81 (158)
T cd05015 6 RIKEFAEKVRSGKKITDVVVIGIGGSDLGPRAVYEALKPYFKGGLRLHFVSNVDPDD-LAELLKK-L--DPETTLFIVIS 81 (158)
T ss_pred HHHHHHHHHhcCCCCCEEEEEecCccHHHHHHHHHHHHhhccCCceEEEEeCCCHHH-HHHHHHh-C--CcccEEEEEEE
Confidence 345566666663 6888999999997 2344443332 23356678875322 1222111 1 12467777777
Q ss_pred CC
Q 041381 165 RL 166 (307)
Q Consensus 165 r~ 166 (307)
.+
T Consensus 82 kS 83 (158)
T cd05015 82 KS 83 (158)
T ss_pred CC
Confidence 65
No 128
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=60.93 E-value=40 Score=32.59 Aligned_cols=71 Identities=11% Similarity=0.149 Sum_probs=42.5
Q ss_pred CeEEEEEeCcCCHH---------H-----HhhcCCCCCCC--CCCCeEEEEecCChhhhhc--c---cccceeecCCCCH
Q 041381 128 MKFLLLLDDIWERI---------D-----LAKVGVPFPAS--SRNASKIVFTTRLVDVCGL--M---EAQKTFKVECFAD 186 (307)
Q Consensus 128 kr~LlVlDdv~~~~---------~-----~~~l~~~~~~~--~~~gs~IivTtr~~~v~~~--~---~~~~~~~l~~L~~ 186 (307)
++++|++|+++... + ...+... +.. ...+..||.||...+.... . .-...+.++..+.
T Consensus 289 ~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~-LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~ 367 (512)
T TIGR03689 289 RPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSE-LDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDA 367 (512)
T ss_pred CCceEEEehhhhhhcccCCCccchHHHHHHHHHHHH-hcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCH
Confidence 57899999997421 1 1222222 211 1234556667755543221 1 1244689999999
Q ss_pred HhHHHHHHHHhCC
Q 041381 187 QDAWELFLKKVGQ 199 (307)
Q Consensus 187 ~e~~~Lf~~~~~~ 199 (307)
++..++|..+...
T Consensus 368 e~r~~Il~~~l~~ 380 (512)
T TIGR03689 368 EAAADIFSKYLTD 380 (512)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999998754
No 129
>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=60.85 E-value=80 Score=32.65 Aligned_cols=98 Identities=23% Similarity=0.294 Sum_probs=55.0
Q ss_pred CCeEEEEEeCcCCH--------HHHhhcCCCCCCCCCCCeEEEEecCChhhhhcccc---cceeecCCCCHHhHHHHHHH
Q 041381 127 KMKFLLLLDDIWER--------IDLAKVGVPFPASSRNASKIVFTTRLVDVCGLMEA---QKTFKVECFADQDAWELFLK 195 (307)
Q Consensus 127 ~kr~LlVlDdv~~~--------~~~~~l~~~~~~~~~~gs~IivTtr~~~v~~~~~~---~~~~~l~~L~~~e~~~Lf~~ 195 (307)
.++-|+|+|.+-.. -.|.-+. . +. ...+|+.|+.|....+....+. ..-+++......+- -.|.+
T Consensus 685 T~~SLvilDEiGRGTsT~DGlaIA~Av~e-y-L~-~~~~~~tLFATHy~ELt~l~~~~~~v~N~h~~~~e~~~~-i~Fl~ 760 (843)
T COG0249 685 TERSLVILDEIGRGTSTYDGLAIAWAVLE-Y-LH-EKIGCRTLFATHYHELTELEEKLPQVKNYHMSAVEEGGD-ITFLY 760 (843)
T ss_pred CCCcEEEEecccCCCCcchhHHHHHHHHH-H-HH-hccCceEEEeccHHHHHHhhhcccccceeEEEEEEcCCc-eEEEE
Confidence 45669999999642 1233221 1 21 2368999999999887665433 22233332111111 11222
Q ss_pred HhCCCCCCCCCChHHHHHHHHHHCCCChHHHHHHHHHHc
Q 041381 196 KVGQETLESHPDIPELAQTVAKECSGLPLALITTSRAMS 234 (307)
Q Consensus 196 ~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ig~~L~ 234 (307)
.+ ...+.-...|..+++.+ |+|-.+..-|....
T Consensus 761 kv-----~~G~a~~SyGi~VAkla-GlP~~Vi~rA~~il 793 (843)
T COG0249 761 KV-----KPGIADKSYGIHVAKLA-GLPEEVIERAREIL 793 (843)
T ss_pred Ee-----ccCCCCccHHHHHHHHh-CCCHHHHHHHHHHH
Confidence 22 22344456788888877 88998887775543
No 130
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=60.02 E-value=26 Score=28.00 Aligned_cols=57 Identities=4% Similarity=0.001 Sum_probs=27.9
Q ss_pred CeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEEEecCChh-hhhcc-cccceeecCCCC
Q 041381 128 MKFLLLLDDIWER--IDLAKVGVPFPASSRNASKIVFTTRLVD-VCGLM-EAQKTFKVECFA 185 (307)
Q Consensus 128 kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IivTtr~~~-v~~~~-~~~~~~~l~~L~ 185 (307)
+.=.+|+||++.. +....+... +-....++.+|++|.+.+ +...+ +-...+.+.+++
T Consensus 102 ~~KviiI~~ad~l~~~a~NaLLK~-LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 102 KYKVIIIDEADKLTEEAQNALLKT-LEEPPENTYFILITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp SSEEEEEETGGGS-HHHHHHHHHH-HHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE----
T ss_pred CceEEEeehHhhhhHHHHHHHHHH-hcCCCCCEEEEEEECChHHChHHHHhhceEEecCCCC
Confidence 4568899999763 233333221 222245788888887764 33322 224456666553
No 131
>PRK00973 glucose-6-phosphate isomerase; Provisional
Probab=57.23 E-value=35 Score=32.34 Aligned_cols=44 Identities=16% Similarity=0.375 Sum_probs=29.0
Q ss_pred cHHHHHHHHhcCCceEEEEEcCchh---HHHHHHHhcCC------------eEEEEEeCcC
Q 041381 93 TFDKVWRCLVEGQFGIIGLYGMGGK---ASGIFNLLSKM------------KFLLLLDDIW 138 (307)
Q Consensus 93 ~~~~l~~~L~~~~~~vi~I~G~gGi---~~~l~~~l~~k------------r~LlVlDdv~ 138 (307)
+.+++...+. +...|.++||||. .+.+.+.+... .-+.++||++
T Consensus 60 ~~~~~~~~~~--~~~~vVviGIGGS~LG~~al~~al~~~~~~~~~~~~~~~~~l~~~~n~d 118 (446)
T PRK00973 60 SYEELKEWSK--NFDNVVVLGIGGSALGNLALHYALNPLNWNELSKEERNGPRVFVLDNVD 118 (446)
T ss_pred HHHHHHHHhh--cCCEEEEEcCCchhHHHHHHHHHHhhhccccccccccCCceEEEeCCCC
Confidence 5555555443 4678999999997 55666555431 2367789996
No 132
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=53.64 E-value=1.3e+02 Score=30.47 Aligned_cols=43 Identities=9% Similarity=0.081 Sum_probs=26.5
Q ss_pred ceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCCh
Q 041381 177 KTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLP 223 (307)
Q Consensus 177 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 223 (307)
..+.+...+.++-.+++...........+. ....+++.+.|..
T Consensus 339 ~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~----~l~~la~~t~G~~ 381 (733)
T TIGR01243 339 REIVIRVPDKRARKEILKVHTRNMPLAEDV----DLDKLAEVTHGFV 381 (733)
T ss_pred EEEEeCCcCHHHHHHHHHHHhcCCCCcccc----CHHHHHHhCCCCC
Confidence 467788888888888888655332211111 2456777777764
No 133
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=52.66 E-value=1.9e+02 Score=28.02 Aligned_cols=92 Identities=9% Similarity=0.107 Sum_probs=55.1
Q ss_pred CeEEEEEeCcCC--HHHHhhcCCCCCCCCCCCe-EEEEecCChhhhh-cccccceeecCCCCHHhHHHHHHHHhCCCCCC
Q 041381 128 MKFLLLLDDIWE--RIDLAKVGVPFPASSRNAS-KIVFTTRLVDVCG-LMEAQKTFKVECFADQDAWELFLKKVGQETLE 203 (307)
Q Consensus 128 kr~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs-~IivTtr~~~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~ 203 (307)
|-=..|+|.|.- ...|..+.-. +-.....- -|+.||--+.+-. ..+-.+.|.++.++.++-...+...+..++..
T Consensus 119 ryKVyiIDEvHMLS~~afNALLKT-LEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~ 197 (515)
T COG2812 119 RYKVYIIDEVHMLSKQAFNALLKT-LEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGIN 197 (515)
T ss_pred cceEEEEecHHhhhHHHHHHHhcc-cccCccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCc
Confidence 444678899963 4456665444 32222333 4556665555543 33456789999999998888888887665532
Q ss_pred CCCChHHHHHHHHHHCCCCh
Q 041381 204 SHPDIPELAQTVAKECSGLP 223 (307)
Q Consensus 204 ~~~~l~~~~~~i~~~c~GlP 223 (307)
.+ .+...-|++.-+|..
T Consensus 198 ~e---~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 198 IE---EDALSLIARAAEGSL 214 (515)
T ss_pred cC---HHHHHHHHHHcCCCh
Confidence 22 344455566666643
No 134
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=51.19 E-value=2.2e+02 Score=26.99 Aligned_cols=87 Identities=15% Similarity=0.125 Sum_probs=49.8
Q ss_pred EEEEecCChhhhh--ccc---ccceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChHHHHHHHH-H
Q 041381 159 KIVFTTRLVDVCG--LME---AQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALITTSR-A 232 (307)
Q Consensus 159 ~IivTtr~~~v~~--~~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ig~-~ 232 (307)
-||.||...+-.. .+. .+..+.+...+.+....||....+.+. . ..++.+|.+...|--+.=..++. +
T Consensus 340 IivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~----h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 340 IIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--D----HRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred EEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--C----cchhHHHHHHhhcCccCHHHHHHHH
Confidence 3556666554321 122 234678899999999999999987643 1 24556666666666555445554 4
Q ss_pred HcCCCChh-HHHHHHHHHhh
Q 041381 233 MSSKKRPE-ERSYAIQMLRR 251 (307)
Q Consensus 233 L~~~~~~~-~w~~~l~~l~~ 251 (307)
|..+.+.+ ..+.+.+.|++
T Consensus 414 m~~~~dad~~lk~Lv~~l~~ 433 (457)
T KOG0743|consen 414 MKNKNDADVALKGLVEALES 433 (457)
T ss_pred hhccccHHHHHHHHHHHHHh
Confidence 44432332 34444444444
No 135
>PRK04132 replication factor C small subunit; Provisional
Probab=51.18 E-value=1.3e+02 Score=31.15 Aligned_cols=142 Identities=13% Similarity=0.069 Sum_probs=78.5
Q ss_pred CceeeccccHHHHHHHHhcC--CceEEEEEcCc--hh---HHHHHHHhc-----C-CeEEEEEeCcCCH--HHHhhcCCC
Q 041381 85 PTIIGLESTFDKVWRCLVEG--QFGIIGLYGMG--GK---ASGIFNLLS-----K-MKFLLLLDDIWER--IDLAKVGVP 149 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~~~--~~~vi~I~G~g--Gi---~~~l~~~l~-----~-kr~LlVlDdv~~~--~~~~~l~~~ 149 (307)
|+++|-..-...|.+.+..+ +..++-+-+-- |+ .+.+.+... + +.-++|+|+++.. .....+...
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~AQnALLk~ 653 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRT 653 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHHHHHHHHHH
Confidence 56677555555555544322 23344443333 33 222332221 1 3469999999864 234333322
Q ss_pred CCCCCCCCeEEEEecCCh-hhhhcc-cccceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChHHHH
Q 041381 150 FPASSRNASKIVFTTRLV-DVCGLM-EAQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALI 227 (307)
Q Consensus 150 ~~~~~~~gs~IivTtr~~-~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~ 227 (307)
+-.....+++|++|.+. .+...+ +-...+.+.+++.++-...+...+...+... -.+....|++.|+|.+-.+.
T Consensus 654 -lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i---~~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 654 -MEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL---TEEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred -hhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 22223455666655543 343322 3356889999999998888877664333111 24577899999999885544
Q ss_pred HHH
Q 041381 228 TTS 230 (307)
Q Consensus 228 ~ig 230 (307)
.+-
T Consensus 730 n~L 732 (846)
T PRK04132 730 NIL 732 (846)
T ss_pred HHH
Confidence 443
No 136
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=51.13 E-value=26 Score=32.36 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=26.4
Q ss_pred CCceeeccccHHHHHHHHhcCC---ceEEEEEcCchh
Q 041381 84 QPTIIGLESTFDKVWRCLVEGQ---FGIIGLYGMGGK 117 (307)
Q Consensus 84 ~~~~vGr~~~~~~l~~~L~~~~---~~vi~I~G~gGi 117 (307)
++.+.+|+..+..+..++.... .++|-|+|-.|.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgT 41 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGT 41 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCC
Confidence 5778899999999999887653 345577887777
No 137
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=49.57 E-value=23 Score=36.67 Aligned_cols=34 Identities=18% Similarity=0.353 Sum_probs=26.4
Q ss_pred CCceeeccccHHHHHHHHhc-------C--CceEEEEEcCchh
Q 041381 84 QPTIIGLESTFDKVWRCLVE-------G--QFGIIGLYGMGGK 117 (307)
Q Consensus 84 ~~~~vGr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGi 117 (307)
...++|.+.-++.+.+.+.. . ...++.++|+.|+
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~Gv 607 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGV 607 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCC
Confidence 45789999999998888752 1 2457889999999
No 138
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=49.49 E-value=61 Score=25.68 Aligned_cols=132 Identities=12% Similarity=0.156 Sum_probs=58.4
Q ss_pred cccHHHHHHHHhcC---CceEEEEEcCchhHHHHHHHhc-----CCeEEEEEeCc------CCHHHHhhcCCCCCCCCCC
Q 041381 91 ESTFDKVWRCLVEG---QFGIIGLYGMGGKASGIFNLLS-----KMKFLLLLDDI------WERIDLAKVGVPFPASSRN 156 (307)
Q Consensus 91 ~~~~~~l~~~L~~~---~~~vi~I~G~gGi~~~l~~~l~-----~kr~LlVlDdv------~~~~~~~~l~~~~~~~~~~ 156 (307)
+..+++|.+.+... ...++.+.|...-...+...+. +.+-+||+.+. .....+..+... +.....
T Consensus 12 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~slF~~~klvii~~~~~l~~~~~~~~~~~l~~~-l~~~~~ 90 (172)
T PF06144_consen 12 EEYIKKIRKALIKKDFDDFNVIVFDGSEDDIDELLEELQSPSLFGDKKLVIIKNAPFLKDKLKKKEIKALIEY-LSNPPP 90 (172)
T ss_dssp HHHHHHHHHHHHTTTEEEEEEEE-STTS-HHH-HTTTSTTTTSSSSEEEEEEE-----TT-S-TTHHHHHHHH-TTT--S
T ss_pred HHHHHHHHHHhhcCCCccceEEEEccccCcHHHHHHHHhcCCccCCCeEEEEecCccccccccHHHHHHHHHH-HhCCCC
Confidence 34455666664443 2344444444433333443332 35566666665 234556655544 545556
Q ss_pred CeEEEEecC-Chhh----hhccc-ccceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChHHH
Q 041381 157 ASKIVFTTR-LVDV----CGLME-AQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLAL 226 (307)
Q Consensus 157 gs~IivTtr-~~~v----~~~~~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai 226 (307)
++.+|+.+. ..+. ...+. ....+...+++..+........+...+.. --.+.+..++...++.+..+
T Consensus 91 ~~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~---i~~~a~~~L~~~~~~d~~~l 163 (172)
T PF06144_consen 91 DCILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWIKERAKKNGLK---IDPDAAQYLIERVGNDLSLL 163 (172)
T ss_dssp SEEEEEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHHHHHHTT-E---E-HHHHHHHHHHHTT-HHHH
T ss_pred CEEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHhChHHHHH
Confidence 777888777 2211 11122 23345666666666666666555332211 12345556666666655544
No 139
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=49.46 E-value=13 Score=29.79 Aligned_cols=45 Identities=16% Similarity=0.114 Sum_probs=26.9
Q ss_pred HHHHHhcC-CeEEEEEeCcCCH--------HHHhhcCCCCCCCCCCCeEEEEecCChh
Q 041381 120 GIFNLLSK-MKFLLLLDDIWER--------IDLAKVGVPFPASSRNASKIVFTTRLVD 168 (307)
Q Consensus 120 ~l~~~l~~-kr~LlVlDdv~~~--------~~~~~l~~~~~~~~~~gs~IivTtr~~~ 168 (307)
..++.+.. +-=|+|||.+-.. ++...+ +.....+..+|+|.|+..
T Consensus 86 ~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~l----l~~rp~~~evIlTGr~~p 139 (159)
T cd00561 86 FAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDL----LKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHH----HHcCCCCCEEEEECCCCC
Confidence 34444444 3459999998543 222222 223345678999999854
No 140
>PRK14097 pgi glucose-6-phosphate isomerase; Provisional
Probab=49.09 E-value=62 Score=30.77 Aligned_cols=34 Identities=18% Similarity=0.370 Sum_probs=22.8
Q ss_pred ceEEEEEcCchh---HHHHHHHhcC-------------CeEEEEEeCcCC
Q 041381 106 FGIIGLYGMGGK---ASGIFNLLSK-------------MKFLLLLDDIWE 139 (307)
Q Consensus 106 ~~vi~I~G~gGi---~~~l~~~l~~-------------kr~LlVlDdv~~ 139 (307)
...|.++|+||. .+.+.+.+.. .+...+.||++.
T Consensus 73 ~~~vV~IGIGGS~LG~~al~~al~~~~~~~~~~~~~~~~~~~f~~dn~Dp 122 (448)
T PRK14097 73 SDVLVVIGIGGSYLGARAAIEFLNHSFYNLLPKEQRKAPQIIFAGNSISS 122 (448)
T ss_pred CCEEEEEecCcchhhHHHHHHHhhhhhcccccccccCCccEEEecCCCCH
Confidence 478889999997 5555555532 245567898853
No 141
>PRK14096 pgi glucose-6-phosphate isomerase; Provisional
Probab=48.52 E-value=56 Score=31.72 Aligned_cols=60 Identities=13% Similarity=0.180 Sum_probs=35.3
Q ss_pred CceEEEEEcCchh---HHHHHHHhcC---CeEEEEEeCcCCHHHHhhcCCCCCCCCCCCeEEEEecCC
Q 041381 105 QFGIIGLYGMGGK---ASGIFNLLSK---MKFLLLLDDIWERIDLAKVGVPFPASSRNASKIVFTTRL 166 (307)
Q Consensus 105 ~~~vi~I~G~gGi---~~~l~~~l~~---kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IivTtr~ 166 (307)
....|.++|+||. .+.+.+.|+. ..-+.++||+ +......+... +......+-+||+|.+
T Consensus 113 ~~~~vV~IGIGGS~LGp~~v~~AL~~~~~~~~~~f~dN~-Dp~~~~~~l~~-l~~~~~~TLviViSKS 178 (528)
T PRK14096 113 KFTDVLWIGIGGSALGPQFVAEALQPNSDGLNIHFIDNT-DPDGIDRVLAE-LGDRLATTLVVVISKS 178 (528)
T ss_pred CCCeEEEECCCcchHHHHHHHHHHhhcCCCCcEEEEcCC-CHHHHHHHHHH-hcCCCCcEEEEEEeCC
Confidence 4678999999997 6666666643 2235677999 44444333322 2212345566666654
No 142
>CHL00195 ycf46 Ycf46; Provisional
Probab=48.28 E-value=85 Score=30.24 Aligned_cols=95 Identities=13% Similarity=0.065 Sum_probs=51.3
Q ss_pred CCeEEEEEeCcCCHHH--------------HhhcCCCCCCCCCCCeEEEEecCChhhhh-cc----cccceeecCCCCHH
Q 041381 127 KMKFLLLLDDIWERID--------------LAKVGVPFPASSRNASKIVFTTRLVDVCG-LM----EAQKTFKVECFADQ 187 (307)
Q Consensus 127 ~kr~LlVlDdv~~~~~--------------~~~l~~~~~~~~~~gs~IivTtr~~~v~~-~~----~~~~~~~l~~L~~~ 187 (307)
..+++|++|+++.... ...+... +.....+--||.||.+.+... .+ .-+..+.++..+.+
T Consensus 317 ~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~-l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~ 395 (489)
T CHL00195 317 LSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITW-LSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLE 395 (489)
T ss_pred cCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHH-HhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHH
Confidence 4679999999963210 1111111 112233445666776554211 11 22457888888999
Q ss_pred hHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChH
Q 041381 188 DAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPL 224 (307)
Q Consensus 188 e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPL 224 (307)
+-.++|..+.......... ......+++.+.|.-=
T Consensus 396 eR~~Il~~~l~~~~~~~~~--~~dl~~La~~T~GfSG 430 (489)
T CHL00195 396 EREKIFKIHLQKFRPKSWK--KYDIKKLSKLSNKFSG 430 (489)
T ss_pred HHHHHHHHHHhhcCCCccc--ccCHHHHHhhcCCCCH
Confidence 9999999887543211100 1123566666666543
No 143
>PRK03868 glucose-6-phosphate isomerase; Provisional
Probab=47.75 E-value=78 Score=29.70 Aligned_cols=69 Identities=16% Similarity=0.273 Sum_probs=35.7
Q ss_pred HHHHHHHHhcC-CceEEEEEcCchh---HHHHHHHhcC----CeEEEEEeCcCCHHHHhhcCCCCCCCCCCCeEEEEecC
Q 041381 94 FDKVWRCLVEG-QFGIIGLYGMGGK---ASGIFNLLSK----MKFLLLLDDIWERIDLAKVGVPFPASSRNASKIVFTTR 165 (307)
Q Consensus 94 ~~~l~~~L~~~-~~~vi~I~G~gGi---~~~l~~~l~~----kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IivTtr 165 (307)
++++.+.+.+. +...|.++|+||. .+.+.+.+.. ..-+.++||+. ......+... + ....+-+|+.|.
T Consensus 45 i~e~~~~i~~~~~~~~VV~iGIGGS~LG~~~l~~al~~~~~~~~~i~f~~n~d-p~~~~~~l~~-~--~~~~TlviviSK 120 (410)
T PRK03868 45 IEESLKFVKDKESIKNIVVIGIGGSSLGVKAIYSFLKNEKNNKKELHFLENTD-PISINKTLSK-I--NLENTLFIVISK 120 (410)
T ss_pred HHHHHHHHHhhCCCCEEEEEecChHHHHHHHHHHHHHhhccCCCcEEEEecCC-HHHHHHHHhc-C--CCCcEEEEEEeC
Confidence 34444333322 5788999999997 4455554421 12246678885 3333333222 1 223455555555
Q ss_pred C
Q 041381 166 L 166 (307)
Q Consensus 166 ~ 166 (307)
+
T Consensus 121 S 121 (410)
T PRK03868 121 S 121 (410)
T ss_pred C
Confidence 4
No 144
>PRK00179 pgi glucose-6-phosphate isomerase; Reviewed
Probab=47.59 E-value=76 Score=31.01 Aligned_cols=35 Identities=11% Similarity=0.085 Sum_probs=23.9
Q ss_pred CceEEEEEcCchh---HHHHHHHhc----CCeEEEEEeCcCC
Q 041381 105 QFGIIGLYGMGGK---ASGIFNLLS----KMKFLLLLDDIWE 139 (307)
Q Consensus 105 ~~~vi~I~G~gGi---~~~l~~~l~----~kr~LlVlDdv~~ 139 (307)
....|.++|+||. .+.+.+.|. +..-+.++||++.
T Consensus 144 ~~~~vV~IGIGGS~LGp~~~~~al~~~~~~~~~l~fl~nvDp 185 (548)
T PRK00179 144 AITDVVNIGIGGSDLGPVMVTEALRPYADPGLRVHFVSNVDG 185 (548)
T ss_pred ccCeEEEECCCcchHHHHHHHHHhhhhccCCCceEEEeCCCH
Confidence 3778999999997 556666553 2223577799853
No 145
>PRK10536 hypothetical protein; Provisional
Probab=46.66 E-value=34 Score=29.86 Aligned_cols=30 Identities=13% Similarity=0.140 Sum_probs=23.0
Q ss_pred ceeeccccHHHHHHHHhcCCceEEEEEcCchh
Q 041381 86 TIIGLESTFDKVWRCLVEGQFGIIGLYGMGGK 117 (307)
Q Consensus 86 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGi 117 (307)
.+.+++.....++.+|.+. .++.+.|..|.
T Consensus 56 ~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGT 85 (262)
T PRK10536 56 PILARNEAQAHYLKAIESK--QLIFATGEAGC 85 (262)
T ss_pred cccCCCHHHHHHHHHHhcC--CeEEEECCCCC
Confidence 4567888888888888764 47778888887
No 146
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=46.24 E-value=1.1e+02 Score=30.63 Aligned_cols=63 Identities=13% Similarity=0.128 Sum_probs=36.9
Q ss_pred CCeEEEEecCChhhhhc--c---cccceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCC
Q 041381 156 NASKIVFTTRLVDVCGL--M---EAQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGL 222 (307)
Q Consensus 156 ~gs~IivTtr~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~Gl 222 (307)
.+.-+|.||...+.... . .-...+.+...+.++-.+++..+........+.++ ..+++.+.|.
T Consensus 289 ~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~----~~la~~t~G~ 356 (644)
T PRK10733 289 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDA----AIIARGTPGF 356 (644)
T ss_pred CCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCH----HHHHhhCCCC
Confidence 34556667776654321 1 12456788888888888998888755432222232 3456666663
No 147
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=43.98 E-value=1.4e+02 Score=29.55 Aligned_cols=106 Identities=13% Similarity=0.134 Sum_probs=64.4
Q ss_pred ceeeccccHHHHHHHHh------cCCceEEEEEcCchh-----HHHHHHHhcCCeEEEEEeCcCCHHHHhhcCCCCCCCC
Q 041381 86 TIIGLESTFDKVWRCLV------EGQFGIIGLYGMGGK-----ASGIFNLLSKMKFLLLLDDIWERIDLAKVGVPFPASS 154 (307)
Q Consensus 86 ~~vGr~~~~~~l~~~L~------~~~~~vi~I~G~gGi-----~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~ 154 (307)
+++|.++.+++|++.|. +..-+++.++|+.|+ ++.|.+.++.-..- . +..+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y-~-----------------~kg~ 138 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIY-V-----------------LKAN 138 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcce-e-----------------ecCC
Confidence 57999999999999994 335679999999998 55566655433110 1 1110
Q ss_pred CCCeEEEEecCChhhhhcccccceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChHH
Q 041381 155 RNASKIVFTTRLVDVCGLMEAQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLA 225 (307)
Q Consensus 155 ~~gs~IivTtr~~~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLa 225 (307)
.. ....+..+|..+++++-..+|....|-........+...+...++..+|-...
T Consensus 139 ~~----------------~sP~~e~PL~L~p~~~~~~~le~~~gi~~r~i~g~lsP~~r~rL~e~~Gd~~~ 193 (644)
T PRK15455 139 GE----------------RSPVNESPLGLFDPDEDGPILEEEYGIPRRYLGTIMSPWAVKRLHEFGGDISK 193 (644)
T ss_pred CC----------------CCCCCCCCCCCCChhhhHHHHHHHhCCCccccCCCCCHHHHHHHHHhCCCchh
Confidence 10 11233456667778888888877766542223334445555555666665444
No 148
>PF11868 DUF3388: Protein of unknown function (DUF3388); InterPro: IPR024514 This domain is found in a family of bacterial proteins that are functionally uncharacterised. Proteins in this family are typically between 261 to 275 amino acids in length and have a N-terminal ACT domain.
Probab=43.55 E-value=56 Score=26.39 Aligned_cols=41 Identities=20% Similarity=0.304 Sum_probs=25.0
Q ss_pred cHHHHHHHH----hcCCceEEEEEcCchh---HHHHH-HHhcCCeEEEE
Q 041381 93 TFDKVWRCL----VEGQFGIIGLYGMGGK---ASGIF-NLLSKMKFLLL 133 (307)
Q Consensus 93 ~~~~l~~~L----~~~~~~vi~I~G~gGi---~~~l~-~~l~~kr~LlV 133 (307)
++--|+++| ..++..+|||-||+-+ ...+. ..-.+|||++|
T Consensus 37 eLGlLVDFmaEl~K~~Gh~lIGiRGmPRVGKTEsivAasVcAnKrW~f~ 85 (192)
T PF11868_consen 37 ELGLLVDFMAELFKEEGHKLIGIRGMPRVGKTESIVAASVCANKRWLFL 85 (192)
T ss_pred HhccHHHHHHHHHHhcCceEEeecCCCccCchhHHHHHhhhcCceEEEe
Confidence 444455544 4568999999999988 11222 22345777665
No 149
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=43.49 E-value=23 Score=29.73 Aligned_cols=12 Identities=42% Similarity=0.728 Sum_probs=8.5
Q ss_pred ceEEEEEcCchh
Q 041381 106 FGIIGLYGMGGK 117 (307)
Q Consensus 106 ~~vi~I~G~gGi 117 (307)
+.+|.|.||||.
T Consensus 67 ~d~ivIAGMGG~ 78 (205)
T PF04816_consen 67 VDTIVIAGMGGE 78 (205)
T ss_dssp --EEEEEEE-HH
T ss_pred CCEEEEecCCHH
Confidence 678999999997
No 150
>PF00342 PGI: Phosphoglucose isomerase The structure is C alpha atoms only with no sequence assignment.; InterPro: IPR001672 Phosphoglucose isomerase (5.3.1.9 from EC) (PGI) [, ] is a dimeric enzyme that catalyses the reversible isomerization of glucose-6-phosphate and fructose-6-phosphate. PGI is involved in different pathways: in most higher organisms it is involved in glycolysis; in mammals it is involved in gluconeogenesis; in plants in carbohydrate biosynthesis; in some bacteria it provides a gateway for fructose into the Entner-Doudouroff pathway. The multifunctional protein, PGI, is also known as neuroleukin (a neurotrophic factor that mediates the differentiation of neurons), autocrine motility factor (a tumour-secreted cytokine that regulates cell motility), differentiation and maturation mediator and myofibril-bound serine proteinase inhibitor, and has different roles inside and outside the cell. In the cytoplasm, it catalyses the second step in glycolysis, while outside the cell it serves as a nerve growth factor and cytokine []. PGI from Bacillus stearothermophilus has an open twisted alpha/beta structural motif consisting of two globular domains and two protruding parts. It has been suggested that the top part of the large domain together with one of the protruding loops might participate in inducing the neurotrophic activity []. The structure of rabbit muscle phosphoglucose isomerase complexed with various inhibitors shows that the enzyme is a dimer with two alpha/beta-sandwich domains in each subunit. The location of the bound D-gluconate 6-phosphate inhibitor leads to the identification of residues involved in substrate specificity. In addition, the positions of amino acid residues that are substituted in the genetic disease nonspherocytic hemolytic anemia suggest how these substitutions can result in altered catalysis or protein stability [, ].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis; PDB: 1ZZG_B 1JIQ_A 1IRI_B 1IAT_A 1JLH_C 1NUH_A 1KOJ_A 1HOX_A 1G98_B 1DQR_A ....
Probab=42.99 E-value=62 Score=31.11 Aligned_cols=57 Identities=18% Similarity=0.285 Sum_probs=36.6
Q ss_pred ceEEEEEcCchh---HHHHHHHhcC----CeEEEEEeCcCCHHHHhhcCCCCCCCCCCCeEEEEecCC
Q 041381 106 FGIIGLYGMGGK---ASGIFNLLSK----MKFLLLLDDIWERIDLAKVGVPFPASSRNASKIVFTTRL 166 (307)
Q Consensus 106 ~~vi~I~G~gGi---~~~l~~~l~~----kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IivTtr~ 166 (307)
...|.++|+||. .+.+.+.|.. ..-+.++||++ ...+..+... + ....+-++|.|.+
T Consensus 96 ~~~vV~IGIGGS~LGp~~~~~al~~~~~~~~~~~f~~n~D-p~~l~~~l~~-l--d~~~Tl~iViSKS 159 (486)
T PF00342_consen 96 ITDVVVIGIGGSSLGPRALYEALKPYFSNPPRLHFLDNVD-PADLARLLER-L--DPETTLFIVISKS 159 (486)
T ss_dssp -SEEEEE--GGGTHHHHHHHHHTGGGTTSSCEEEEESSSS-HHHHHHHHTT-S--TGGGEEEEEEESS
T ss_pred eeEEEEEecchhhHHHHHHHHHhhhhcccceEEEEeccCC-hHHHHHHHhc-C--CCccEEEEEecCC
Confidence 678999999999 7777777764 25688999994 4444444333 2 2345678888876
No 151
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=42.77 E-value=25 Score=31.43 Aligned_cols=34 Identities=15% Similarity=0.157 Sum_probs=23.9
Q ss_pred CCceeeccccHHHHHHHHhc----C---CceEEEEEcCchh
Q 041381 84 QPTIIGLESTFDKVWRCLVE----G---QFGIIGLYGMGGK 117 (307)
Q Consensus 84 ~~~~vGr~~~~~~l~~~L~~----~---~~~vi~I~G~gGi 117 (307)
+..++|..-.++.|+..+.+ + ..=+++.+|-.|+
T Consensus 81 ~~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGT 121 (344)
T KOG2170|consen 81 ARALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGT 121 (344)
T ss_pred HHHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCC
Confidence 34567776666777776653 2 4568999999998
No 152
>PRK13236 nitrogenase reductase; Reviewed
Probab=42.45 E-value=30 Score=30.71 Aligned_cols=29 Identities=21% Similarity=0.479 Sum_probs=21.5
Q ss_pred cCCceEEEEEcCchh---------HHHHHHHhcCCeEEEE
Q 041381 103 EGQFGIIGLYGMGGK---------ASGIFNLLSKMKFLLL 133 (307)
Q Consensus 103 ~~~~~vi~I~G~gGi---------~~~l~~~l~~kr~LlV 133 (307)
+++.++|++.|-||+ +..+.+ .|+|+|+|
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~~La~--~G~rVLli 40 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLAAMAE--MGQRILIV 40 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHHHHHH--CCCcEEEE
Confidence 457899999999999 222333 48899888
No 153
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=42.17 E-value=10 Score=31.80 Aligned_cols=45 Identities=13% Similarity=0.093 Sum_probs=25.1
Q ss_pred CeEEEEEeCcCCH---HHHhhcCCCCCCCCCCCeEEEEecCChhhhhcc
Q 041381 128 MKFLLLLDDIWER---IDLAKVGVPFPASSRNASKIVFTTRLVDVCGLM 173 (307)
Q Consensus 128 kr~LlVlDdv~~~---~~~~~l~~~~~~~~~~gs~IivTtr~~~v~~~~ 173 (307)
..-++||||+... .....+... +....+++.+||||.++.+....
T Consensus 158 ~~p~~ilDEvd~~LD~~~~~~l~~~-l~~~~~~~Q~ii~Th~~~~~~~a 205 (220)
T PF02463_consen 158 PSPFLILDEVDAALDEQNRKRLADL-LKELSKQSQFIITTHNPEMFEDA 205 (220)
T ss_dssp --SEEEEESTTTTS-HHHHHHHHHH-HHHHTTTSEEEEE-S-HHHHTT-
T ss_pred ccccccccccccccccccccccccc-ccccccccccccccccccccccc
Confidence 4458899999753 222332222 22334568899999998887654
No 154
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=40.90 E-value=45 Score=30.65 Aligned_cols=53 Identities=13% Similarity=0.192 Sum_probs=39.6
Q ss_pred CceeeccccHHHHHHHHhcC------CceEEEEEcCchh-----HHHHHHHhc-------CCeEEEEEeCc
Q 041381 85 PTIIGLESTFDKVWRCLVEG------QFGIIGLYGMGGK-----ASGIFNLLS-------KMKFLLLLDDI 137 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~~~------~~~vi~I~G~gGi-----~~~l~~~l~-------~kr~LlVlDdv 137 (307)
.+++|.++.++++++++... ..+++.++|+.|. ++.|.+.+. |..|-+-.+++
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~ 121 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGE 121 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCC
Confidence 37899999999999998752 4689999999999 555555554 36677766444
No 155
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=40.85 E-value=4e+02 Score=26.98 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=25.4
Q ss_pred CCceeeccccHHHHHHHHhc---C--CceEEEEEcCchh
Q 041381 84 QPTIIGLESTFDKVWRCLVE---G--QFGIIGLYGMGGK 117 (307)
Q Consensus 84 ~~~~vGr~~~~~~l~~~L~~---~--~~~vi~I~G~gGi 117 (307)
+..+-+||.+..+|.+.+.. + .-+++-|.|.+|.
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGt 433 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGT 433 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCC
Confidence 44567899999999988763 2 3447888888887
No 156
>PRK08116 hypothetical protein; Validated
Probab=40.81 E-value=21 Score=31.27 Aligned_cols=35 Identities=31% Similarity=0.329 Sum_probs=18.2
Q ss_pred EEEEeCcC--CHHHHhh--cCCCCCC-CCCCCeEEEEecCC
Q 041381 131 LLLLDDIW--ERIDLAK--VGVPFPA-SSRNASKIVFTTRL 166 (307)
Q Consensus 131 LlVlDdv~--~~~~~~~--l~~~~~~-~~~~gs~IivTtr~ 166 (307)
|||+||+- ...+|.. +..- +. .-.+|..+|+||..
T Consensus 181 lLviDDlg~e~~t~~~~~~l~~i-in~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 181 LLILDDLGAERDTEWAREKVYNI-IDSRYRKGLPTIVTTNL 220 (268)
T ss_pred EEEEecccCCCCCHHHHHHHHHH-HHHHHHCCCCEEEECCC
Confidence 89999993 2233321 1110 11 11345678999864
No 157
>PRK06696 uridine kinase; Validated
Probab=40.10 E-value=43 Score=28.24 Aligned_cols=51 Identities=10% Similarity=0.154 Sum_probs=35.3
Q ss_pred ccccHHHHHHHHhc---CCceEEEEEcCchh-----HHHHHHHhcCC-eEEEE--EeCcCCH
Q 041381 90 LESTFDKVWRCLVE---GQFGIIGLYGMGGK-----ASGIFNLLSKM-KFLLL--LDDIWER 140 (307)
Q Consensus 90 r~~~~~~l~~~L~~---~~~~vi~I~G~gGi-----~~~l~~~l~~k-r~LlV--lDdv~~~ 140 (307)
|.+.+++|.+.+.. +...+|+|.|.+|. ++.|.+.|... .-.++ +||....
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~ 64 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNP 64 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCC
Confidence 55667777777764 36789999999998 77777777532 22333 7888643
No 158
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=39.56 E-value=85 Score=27.67 Aligned_cols=55 Identities=20% Similarity=0.370 Sum_probs=36.4
Q ss_pred CCCceeec-cccHHHHHHHHhcCCceEEEEEcCchhHHHHHHHhcCCeEEEEEeCcC
Q 041381 83 LQPTIIGL-ESTFDKVWRCLVEGQFGIIGLYGMGGKASGIFNLLSKMKFLLLLDDIW 138 (307)
Q Consensus 83 ~~~~~vGr-~~~~~~l~~~L~~~~~~vi~I~G~gGi~~~l~~~l~~kr~LlVlDdv~ 138 (307)
.++.+||+ |.+-.++.+.-+. +.+.|.|.|.||+.-.+--.++.-.+--+.||-|
T Consensus 111 ~n~~Iv~irDtDsaQllq~kl~-kaK~VlilgnGgia~El~yElk~~nv~w~ikd~~ 166 (334)
T KOG2755|consen 111 INPKIVGIRDTDSAQLLQCKLV-KAKIVLILGNGGIAMELTYELKILNVTWKIKDEG 166 (334)
T ss_pred CCceEEEEecCcHHHHHHHHHh-hcceEEEEecCchhHHHHHHhhcceeEEEecchh
Confidence 36789997 7777666554332 3578999999999666655555555444455543
No 159
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=39.52 E-value=23 Score=36.12 Aligned_cols=113 Identities=16% Similarity=0.197 Sum_probs=59.1
Q ss_pred CCeEEEEEeCcCCH---HHHh----hcCCCCCCCCCCCeEEEEecCChhhhhccccccee-ecC-CCCHHhHHHHHHHHh
Q 041381 127 KMKFLLLLDDIWER---IDLA----KVGVPFPASSRNASKIVFTTRLVDVCGLMEAQKTF-KVE-CFADQDAWELFLKKV 197 (307)
Q Consensus 127 ~kr~LlVlDdv~~~---~~~~----~l~~~~~~~~~~gs~IivTtr~~~v~~~~~~~~~~-~l~-~L~~~e~~~Lf~~~~ 197 (307)
..+-|+++|..-.. ..-. .+... +. ..|+.+|+||....+.........+ ... .++.+.-.-.++-.-
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~-l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~p~Ykl~~ 477 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEY-LL--KQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLSPTYKLLK 477 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHH-HH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCceEEEECC
Confidence 37889999998752 1111 12122 21 3578899999998875432111111 110 011110000011111
Q ss_pred CCCCCCCCCChHHHHHHHHHHCCCChHHHHHHHHHHcCCCChhHHHHHHHHHhh
Q 041381 198 GQETLESHPDIPELAQTVAKECSGLPLALITTSRAMSSKKRPEERSYAIQMLRR 251 (307)
Q Consensus 198 ~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ig~~L~~~~~~~~w~~~l~~l~~ 251 (307)
|... ...|-.|++++ |+|-.+.--|..+.. ....+.+.+++.|..
T Consensus 478 G~~g-------~S~a~~iA~~~-Glp~~ii~~A~~~~~-~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 478 GIPG-------ESYAFEIAQRY-GIPHFIIEQAKTFYG-EFKEEINVLIEKLSA 522 (771)
T ss_pred CCCC-------CcHHHHHHHHh-CcCHHHHHHHHHHHH-hhHHHHHHHHHHHHH
Confidence 2111 34678888887 899998888877765 344556666655544
No 160
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=39.32 E-value=1.1e+02 Score=31.57 Aligned_cols=34 Identities=26% Similarity=0.258 Sum_probs=27.8
Q ss_pred CCceeeccccHHHHHHHHhc------CCceEEEEEcCchh
Q 041381 84 QPTIIGLESTFDKVWRCLVE------GQFGIIGLYGMGGK 117 (307)
Q Consensus 84 ~~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGi 117 (307)
+.+.+|.+..++.|+.+|.. ....++.++|.+|+
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~ 360 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGV 360 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCC
Confidence 56789999999999988763 13568999999998
No 161
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=38.05 E-value=1.6e+02 Score=30.11 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=25.6
Q ss_pred CCceeeccccHHHHHHHHhc----C--CceEEEEEcCchh
Q 041381 84 QPTIIGLESTFDKVWRCLVE----G--QFGIIGLYGMGGK 117 (307)
Q Consensus 84 ~~~~vGr~~~~~~l~~~L~~----~--~~~vi~I~G~gGi 117 (307)
..+++|.+..++.|.+++.. . ...++.++|.+|+
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~ 358 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGV 358 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCC
Confidence 45578998888888886542 1 3458999999999
No 162
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=37.79 E-value=2.8e+02 Score=24.21 Aligned_cols=96 Identities=14% Similarity=0.099 Sum_probs=50.3
Q ss_pred CCeEEEEEeCcCC---HHHHhhcCCCCCCCCCCCeEEEEecCChh-------hhhcccccceeecCCCCHHhHHHHHHHH
Q 041381 127 KMKFLLLLDDIWE---RIDLAKVGVPFPASSRNASKIVFTTRLVD-------VCGLMEAQKTFKVECFADQDAWELFLKK 196 (307)
Q Consensus 127 ~kr~LlVlDdv~~---~~~~~~l~~~~~~~~~~gs~IivTtr~~~-------v~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 196 (307)
+.+-++|+++... ...++.+... +.....+..+|+++...+ .....+....+...+++..+-.......
T Consensus 45 ~~~kliii~~~~~~~~~~~~~~L~~~-l~~~~~~~~~i~~~~~~~~~~~~~k~~~~~~~~~~i~~~~~~~~~~~~~i~~~ 123 (302)
T TIGR01128 45 SERRLVELRNPEGKPGAKGLKALEEY-LANPPPDTLLLIEAPKLDKRKKLTKWLKALKNAQIVECKTPKEQELPRWIQAR 123 (302)
T ss_pred cCCeEEEEECCCCCCCHHHHHHHHHH-HhcCCCCEEEEEecCCCCHhHHHHHHHHHhcCeeEEEecCCCHHHHHHHHHHH
Confidence 3566788888764 2344444333 333344555666654221 1111123456677888888877777776
Q ss_pred hCCCCCCCCCChHHHHHHHHHHCCCChHHH
Q 041381 197 VGQETLESHPDIPELAQTVAKECSGLPLAL 226 (307)
Q Consensus 197 ~~~~~~~~~~~l~~~~~~i~~~c~GlPLai 226 (307)
+...+...+ .+.+..|+..++|-...+
T Consensus 124 ~~~~g~~i~---~~a~~~l~~~~~~d~~~l 150 (302)
T TIGR01128 124 LKKLGLRID---PDAVQLLAELVEGNLLAI 150 (302)
T ss_pred HHHcCCCCC---HHHHHHHHHHhCcHHHHH
Confidence 643331111 344555666666544433
No 163
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=36.81 E-value=49 Score=34.28 Aligned_cols=34 Identities=15% Similarity=0.312 Sum_probs=26.5
Q ss_pred CCceeeccccHHHHHHHHhcC---------CceEEEEEcCchh
Q 041381 84 QPTIIGLESTFDKVWRCLVEG---------QFGIIGLYGMGGK 117 (307)
Q Consensus 84 ~~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGi 117 (307)
...++|.+..++.+.+.+... ...++.++|..|+
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~Gv 606 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGV 606 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCC
Confidence 456899999999998888642 1456889999999
No 164
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=34.00 E-value=36 Score=26.18 Aligned_cols=76 Identities=13% Similarity=0.066 Sum_probs=40.1
Q ss_pred eeccccHHHHHHHHhc--CCceEEEEEcCchh-----------------------------HHHHHHHhcCCeEEEEEeC
Q 041381 88 IGLESTFDKVWRCLVE--GQFGIIGLYGMGGK-----------------------------ASGIFNLLSKMKFLLLLDD 136 (307)
Q Consensus 88 vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGi-----------------------------~~~l~~~l~~kr~LlVlDd 136 (307)
||....++++.+.+.. ....-|.|.|..|. .+.+.+ .+.--++++|
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~~~~l~~---a~~gtL~l~~ 77 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLPAELLEQ---AKGGTLYLKN 77 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTCHHHHHH---CTTSEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCcHHHHHH---cCCCEEEECC
Confidence 4666667777766653 23445678888888 222222 1455678899
Q ss_pred cCCHH--HHhhcCCCCCC-CCCCCeEEEEecCCh
Q 041381 137 IWERI--DLAKVGVPFPA-SSRNASKIVFTTRLV 167 (307)
Q Consensus 137 v~~~~--~~~~l~~~~~~-~~~~gs~IivTtr~~ 167 (307)
+.... ....+... +. ......|+|.||...
T Consensus 78 i~~L~~~~Q~~L~~~-l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 78 IDRLSPEAQRRLLDL-LKRQERSNVRLIASSSQD 110 (138)
T ss_dssp GCCS-HHHHHHHHHH-HHHCTTTTSEEEEEECC-
T ss_pred hHHCCHHHHHHHHHH-HHhcCCCCeEEEEEeCCC
Confidence 87632 22222111 11 124567999998753
No 165
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=33.89 E-value=47 Score=33.78 Aligned_cols=110 Identities=15% Similarity=0.125 Sum_probs=62.4
Q ss_pred ceeeccccHHHHHHHHhcC---CceEEEEEcCchh------------------------------------------HHH
Q 041381 86 TIIGLESTFDKVWRCLVEG---QFGIIGLYGMGGK------------------------------------------ASG 120 (307)
Q Consensus 86 ~~vGr~~~~~~l~~~L~~~---~~~vi~I~G~gGi------------------------------------------~~~ 120 (307)
.++|||++++++++-|..- |+-.||=-|.|.. .+.
T Consensus 171 PvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeR 250 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEER 250 (786)
T ss_pred CCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHH
Confidence 3699999999999999853 4444443333322 233
Q ss_pred HHHHh----cCCeEEEEEeCcCCH----------H-HHhhcCCCCCCCCCCCeEEEEecCChhh------hhccccccee
Q 041381 121 IFNLL----SKMKFLLLLDDIWER----------I-DLAKVGVPFPASSRNASKIVFTTRLVDV------CGLMEAQKTF 179 (307)
Q Consensus 121 l~~~l----~~kr~LlVlDdv~~~----------~-~~~~l~~~~~~~~~~gs~IivTtr~~~v------~~~~~~~~~~ 179 (307)
++..+ +.++..+.+|.+... . .-+-+.++ +.. +.--+|=.||-++.- +....--+.+
T Consensus 251 lk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPa-LAR-GeL~~IGATT~~EYRk~iEKD~AL~RRFQ~V 328 (786)
T COG0542 251 LKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPA-LAR-GELRCIGATTLDEYRKYIEKDAALERRFQKV 328 (786)
T ss_pred HHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHH-Hhc-CCeEEEEeccHHHHHHHhhhchHHHhcCcee
Confidence 33333 345899999998642 1 11122222 222 222356677755421 1111223577
Q ss_pred ecCCCCHHhHHHHHHHHh
Q 041381 180 KVECFADQDAWELFLKKV 197 (307)
Q Consensus 180 ~l~~L~~~e~~~Lf~~~~ 197 (307)
.++..+.+++..+++...
T Consensus 329 ~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 329 LVDEPSVEDTIAILRGLK 346 (786)
T ss_pred eCCCCCHHHHHHHHHHHH
Confidence 888888888888886543
No 166
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=33.78 E-value=76 Score=32.53 Aligned_cols=113 Identities=19% Similarity=0.244 Sum_probs=60.4
Q ss_pred CCeEEEEEeCcCCHH---H---H-hhcCCCCCCCCCCCeEEEEecCChhhhhcccccce-eecCC-CCHHhHHHHHHHHh
Q 041381 127 KMKFLLLLDDIWERI---D---L-AKVGVPFPASSRNASKIVFTTRLVDVCGLMEAQKT-FKVEC-FADQDAWELFLKKV 197 (307)
Q Consensus 127 ~kr~LlVlDdv~~~~---~---~-~~l~~~~~~~~~~gs~IivTtr~~~v~~~~~~~~~-~~l~~-L~~~e~~~Lf~~~~ 197 (307)
..+-|+++|..-... + + ..+... +. ..|+.+|+||....+......... ..... ++.+.-.-.++-..
T Consensus 406 ~~~sLvLlDE~~~GtDp~eg~ala~aile~-l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~d~~~l~~~Ykl~~ 482 (782)
T PRK00409 406 DKNSLVLFDELGAGTDPDEGAALAISILEY-LR--KRGAKIIATTHYKELKALMYNREGVENASVEFDEETLRPTYRLLI 482 (782)
T ss_pred CcCcEEEecCCCCCCCHHHHHHHHHHHHHH-HH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEEEecCcCcEEEEEee
Confidence 477899999987421 1 1 122222 21 247899999999887654432111 11110 11111000111111
Q ss_pred CCCCCCCCCChHHHHHHHHHHCCCChHHHHHHHHHHcCCCChhHHHHHHHHHhh
Q 041381 198 GQETLESHPDIPELAQTVAKECSGLPLALITTSRAMSSKKRPEERSYAIQMLRR 251 (307)
Q Consensus 198 ~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ig~~L~~~~~~~~w~~~l~~l~~ 251 (307)
|..+ ...|-.|++++ |+|-.+.--|..+.. ....+.+.+++.|..
T Consensus 483 G~~g-------~S~a~~iA~~~-Glp~~ii~~A~~~~~-~~~~~~~~li~~l~~ 527 (782)
T PRK00409 483 GIPG-------KSNAFEIAKRL-GLPENIIEEAKKLIG-EDKEKLNELIASLEE 527 (782)
T ss_pred CCCC-------CcHHHHHHHHh-CcCHHHHHHHHHHHh-hhhhHHHHHHHHHHH
Confidence 2211 34578888887 899998888877765 345566666665544
No 167
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=33.65 E-value=82 Score=32.00 Aligned_cols=34 Identities=18% Similarity=0.311 Sum_probs=25.0
Q ss_pred CCceeeccccHHHHHHHHhcC---------CceEEEEEcCchh
Q 041381 84 QPTIIGLESTFDKVWRCLVEG---------QFGIIGLYGMGGK 117 (307)
Q Consensus 84 ~~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGi 117 (307)
...++|-++.++.+.+.+... ...++.++|+.|+
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~Gv 495 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGV 495 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCc
Confidence 456788888888888877631 1346788999998
No 168
>PLN02649 glucose-6-phosphate isomerase
Probab=33.64 E-value=1.4e+02 Score=29.34 Aligned_cols=58 Identities=17% Similarity=0.232 Sum_probs=31.5
Q ss_pred CceEEEEEcCchh---HHHHHHHhcC---------CeEEEEEeCcCCHHHHhhcCCCCCCCCCCCeEEEEecCC
Q 041381 105 QFGIIGLYGMGGK---ASGIFNLLSK---------MKFLLLLDDIWERIDLAKVGVPFPASSRNASKIVFTTRL 166 (307)
Q Consensus 105 ~~~vi~I~G~gGi---~~~l~~~l~~---------kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IivTtr~ 166 (307)
....|.++|+||. .+.+.+.|+. ++-+.++||++.. ....+... + ....+-+||.|.+
T Consensus 146 ~~~~VV~IGIGGS~LGp~~v~~AL~~~~~~~~~~~~~~~~fv~NvDp~-~~~~~l~~-l--~p~~TL~iViSKS 215 (560)
T PLN02649 146 RFTNVVSIGIGGSFLGPLFVHEALATDPEALKSAKGRKLRFLANVDPV-DIARQIAQ-L--DPETTLVVVVSKT 215 (560)
T ss_pred ccceEEEEecCcchHHHHHHHHHHhhhccccccccCCcEEEEeCCCHH-HHHHHHhh-C--CcccEEEEEEeCC
Confidence 4678899999997 5555554432 1134567999643 32222222 1 1234556666654
No 169
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=33.63 E-value=3e+02 Score=25.31 Aligned_cols=68 Identities=18% Similarity=0.154 Sum_probs=39.0
Q ss_pred eEEEEEeCcCCH----HH---HhhcCCCCCCCCCCCeEEEEecCChhhh-------hcccccceeecCCCCHHhHHHHHH
Q 041381 129 KFLLLLDDIWER----ID---LAKVGVPFPASSRNASKIVFTTRLVDVC-------GLMEAQKTFKVECFADQDAWELFL 194 (307)
Q Consensus 129 r~LlVlDdv~~~----~~---~~~l~~~~~~~~~~gs~IivTtr~~~v~-------~~~~~~~~~~l~~L~~~e~~~Lf~ 194 (307)
++..|+|.++-. .+ ..-+... -....+-|-|-+|||-.-.- ..+....++-++.++-++...+++
T Consensus 138 ~ViFIldEfDlf~~h~rQtllYnlfDis-qs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r 216 (408)
T KOG2228|consen 138 KVIFILDEFDLFAPHSRQTLLYNLFDIS-QSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYR 216 (408)
T ss_pred eEEEEeehhhccccchhhHHHHHHHHHH-hhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHH
Confidence 477888877531 11 2222222 22345667788999875331 111222245567788888889988
Q ss_pred HHh
Q 041381 195 KKV 197 (307)
Q Consensus 195 ~~~ 197 (307)
+..
T Consensus 217 ~ll 219 (408)
T KOG2228|consen 217 KLL 219 (408)
T ss_pred HHh
Confidence 876
No 170
>PRK08181 transposase; Validated
Probab=33.34 E-value=23 Score=31.12 Aligned_cols=9 Identities=56% Similarity=0.700 Sum_probs=7.6
Q ss_pred EEEEEeCcC
Q 041381 130 FLLLLDDIW 138 (307)
Q Consensus 130 ~LlVlDdv~ 138 (307)
=|||+||+.
T Consensus 169 dLLIIDDlg 177 (269)
T PRK08181 169 DLLILDDLA 177 (269)
T ss_pred CEEEEeccc
Confidence 489999995
No 171
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=31.78 E-value=2.4e+02 Score=25.18 Aligned_cols=92 Identities=18% Similarity=0.103 Sum_probs=50.7
Q ss_pred CCeEEEEEeCcCCHH--HHhhcCCCCCCCCCCCeEEEEec-CChhhhhc-ccccceeecCCCCHHhHHHHHHHHhCCCCC
Q 041381 127 KMKFLLLLDDIWERI--DLAKVGVPFPASSRNASKIVFTT-RLVDVCGL-MEAQKTFKVECFADQDAWELFLKKVGQETL 202 (307)
Q Consensus 127 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~gs~IivTt-r~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 202 (307)
+++=++|+|++.... ....+... +-....++.+|++| ....+... .+....+++.++++++....+... +..
T Consensus 89 ~~~KvvII~~~e~m~~~a~NaLLK~-LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~-~~~-- 164 (299)
T PRK07132 89 SQKKILIIKNIEKTSNSLLNALLKT-IEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK-NKE-- 164 (299)
T ss_pred CCceEEEEecccccCHHHHHHHHHH-hhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc-CCC--
Confidence 356677888876532 23333222 22234556666555 44444433 334678899999999988777654 211
Q ss_pred CCCCChHHHHHHHHHHCCCChHHHHH
Q 041381 203 ESHPDIPELAQTVAKECSGLPLALIT 228 (307)
Q Consensus 203 ~~~~~l~~~~~~i~~~c~GlPLai~~ 228 (307)
.+.+..++...+|.--|+..
T Consensus 165 ------~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 165 ------KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred ------hhHHHHHHHHcCCHHHHHHH
Confidence 13355566666663344444
No 172
>CHL00095 clpC Clp protease ATP binding subunit
Probab=31.23 E-value=76 Score=32.73 Aligned_cols=34 Identities=18% Similarity=0.226 Sum_probs=25.1
Q ss_pred CCceeeccccHHHHHHHHhcC---------CceEEEEEcCchh
Q 041381 84 QPTIIGLESTFDKVWRCLVEG---------QFGIIGLYGMGGK 117 (307)
Q Consensus 84 ~~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGi 117 (307)
...++|-+..++.+.+.+... ....+.++|+.|+
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~Gv 550 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGV 550 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCC
Confidence 466889988888888877522 1345678999998
No 173
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=31.21 E-value=53 Score=27.35 Aligned_cols=29 Identities=31% Similarity=0.455 Sum_probs=18.5
Q ss_pred eEEEEEcCchh-----HHHHHHHh--cCCeEEEE-Ee
Q 041381 107 GIIGLYGMGGK-----ASGIFNLL--SKMKFLLL-LD 135 (307)
Q Consensus 107 ~vi~I~G~gGi-----~~~l~~~l--~~kr~LlV-lD 135 (307)
++|+|.|-||+ .-.+-..| .++|.|+| +|
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~~G~rvLliD~D 37 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVGCD 37 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 47899999999 22222222 47788777 44
No 174
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=30.81 E-value=1.4e+02 Score=26.71 Aligned_cols=49 Identities=18% Similarity=0.173 Sum_probs=34.7
Q ss_pred eeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChHHH
Q 041381 178 TFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLAL 226 (307)
Q Consensus 178 ~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai 226 (307)
++++++++.+|+..++.......-.......+...+++.-..+|.|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999887754442222344556666776778888643
No 175
>PTZ00430 glucose-6-phosphate isomerase; Provisional
Probab=30.39 E-value=1.7e+02 Score=28.73 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=22.7
Q ss_pred CceEEEEEcCchh---HHHHHHHhcC---------CeEEEEEeCcCC
Q 041381 105 QFGIIGLYGMGGK---ASGIFNLLSK---------MKFLLLLDDIWE 139 (307)
Q Consensus 105 ~~~vi~I~G~gGi---~~~l~~~l~~---------kr~LlVlDdv~~ 139 (307)
....|.++|+||. .+.+.+.|.. +.-+.++||++.
T Consensus 141 ~~~~VV~IGIGGS~LGp~~v~~AL~~~~~~~~~~~~~~~~Fv~NvDp 187 (552)
T PTZ00430 141 KLKNVICIGIGGSYLGTEFVYEALRTYGEAREASKGRKLRFLANVDP 187 (552)
T ss_pred eeceEEEEcCCccchHHHHHHHHHhhcccccccccCCcEEEEeCCCH
Confidence 3678999999997 5555555431 122466799964
No 176
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=29.20 E-value=48 Score=27.47 Aligned_cols=49 Identities=18% Similarity=0.211 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCeE-EEEEeCcCCH-----HHHhhcCCCCCCCCCCCeEEEEecCCh
Q 041381 118 ASGIFNLLSKMKF-LLLLDDIWER-----IDLAKVGVPFPASSRNASKIVFTTRLV 167 (307)
Q Consensus 118 ~~~l~~~l~~kr~-LlVlDdv~~~-----~~~~~l~~~~~~~~~~gs~IivTtr~~ 167 (307)
.+..++.+.+.+| |+|||.+.-. -.++.+... +........||+|-|..
T Consensus 111 w~~a~~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~-l~~kP~~~~vIiTGr~a 165 (198)
T COG2109 111 WEHAKEALADGKYDLVILDELNYALRYGLLPLEEVVAL-LKARPEHTHVIITGRGA 165 (198)
T ss_pred HHHHHHHHhCCCCCEEEEehhhHHHHcCCCCHHHHHHH-HhcCCCCcEEEEECCCC
Confidence 3444556666555 9999998532 223333332 33344567899999874
No 177
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=29.03 E-value=2.7e+02 Score=24.76 Aligned_cols=32 Identities=19% Similarity=0.159 Sum_probs=19.8
Q ss_pred ceEEEEEcCchh----HHHHHHHhcCCeEEEEEeCc
Q 041381 106 FGIIGLYGMGGK----ASGIFNLLSKMKFLLLLDDI 137 (307)
Q Consensus 106 ~~vi~I~G~gGi----~~~l~~~l~~kr~LlVlDdv 137 (307)
-..++|+|.||+ ++.+-+.--||=.|.=.|-|
T Consensus 82 ~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkV 117 (422)
T KOG2336|consen 82 EFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKV 117 (422)
T ss_pred hheeEEEecCchhHHHHHHHHhcCcceEEEeecchh
Confidence 357889999998 55555544455445445554
No 178
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=28.84 E-value=74 Score=27.48 Aligned_cols=11 Identities=45% Similarity=1.035 Sum_probs=10.0
Q ss_pred eEEEEEeCcCC
Q 041381 129 KFLLLLDDIWE 139 (307)
Q Consensus 129 r~LlVlDdv~~ 139 (307)
+.|||+||+-+
T Consensus 99 ~~LiIlDD~~~ 109 (241)
T PF04665_consen 99 RFLIILDDLGD 109 (241)
T ss_pred CeEEEEeCCCC
Confidence 89999999976
No 179
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=28.32 E-value=62 Score=32.61 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=28.3
Q ss_pred CCceeeccccHHHHHHHHhcC------CceEEEEEcCchh
Q 041381 84 QPTIIGLESTFDKVWRCLVEG------QFGIIGLYGMGGK 117 (307)
Q Consensus 84 ~~~~vGr~~~~~~l~~~L~~~------~~~vi~I~G~gGi 117 (307)
+.+-+|.++.+++|++++--. +-.|++.+|++|+
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGV 449 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGV 449 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCC
Confidence 455689999999999988632 5689999999999
No 180
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=28.08 E-value=77 Score=29.48 Aligned_cols=63 Identities=14% Similarity=0.101 Sum_probs=35.3
Q ss_pred CCCeEEEEecCChhhhh--cccc---cceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChH
Q 041381 155 RNASKIVFTTRLVDVCG--LMEA---QKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPL 224 (307)
Q Consensus 155 ~~gs~IivTtr~~~v~~--~~~~---~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPL 224 (307)
..+-.||+||.+.+... .... ...+ ..-+.++-.++++.+..... . . ..-..+|+....|-|+
T Consensus 266 ~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~--l--~-~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 266 IPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDG--V--S-REDVVKLVDTFPGQPL 333 (413)
T ss_pred CCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCC--C--C-HHHHHHHHHcCCCCCc
Confidence 45677899997766422 1221 1223 34566777777776654433 1 1 2445667777777664
No 181
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=27.92 E-value=2e+02 Score=19.56 Aligned_cols=50 Identities=14% Similarity=0.139 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhhcCccCCCchhhhhHHHHHHHHHHHHHhHHh
Q 041381 5 WLSRVEAVEAEVGELTRDTSQEIEKLCLGGYCSKNCKSSYKFGKKVSKKLQLVATLID 62 (307)
Q Consensus 5 Wl~~lr~~ayd~ed~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~ 62 (307)
=++++.....+|+++|+....++.. .+...+..+-.+++..+..+..+..
T Consensus 26 ~i~~~e~~l~ea~~~l~qMe~E~~~--------~p~s~r~~~~~kl~~yr~~l~~lk~ 75 (79)
T PF05008_consen 26 LIREIERDLDEAEELLKQMELEVRS--------LPPSERNQYKSKLRSYRSELKKLKK 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCT--------S-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--------CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777788888888887776642 1234556677778877777776643
No 182
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=27.92 E-value=6.5e+02 Score=25.86 Aligned_cols=138 Identities=13% Similarity=0.124 Sum_probs=81.9
Q ss_pred CceeeccccH---HHHHHHHhcC---------CceEEEEEcCchh---------------------------------HH
Q 041381 85 PTIIGLESTF---DKVWRCLVEG---------QFGIIGLYGMGGK---------------------------------AS 119 (307)
Q Consensus 85 ~~~vGr~~~~---~~l~~~L~~~---------~~~vi~I~G~gGi---------------------------------~~ 119 (307)
.++.|-|+.+ +++++.|.+. -++=+-++|++|. ..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~as 390 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGAS 390 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchH
Confidence 3567776544 5555666653 2456778899988 33
Q ss_pred HHHHHhc----CCeEEEEEeCcCCH-----------------HHHhhcCCCCCCCC--CCCeEEEEecCChhhhhc--cc
Q 041381 120 GIFNLLS----KMKFLLLLDDIWER-----------------IDLAKVGVPFPASS--RNASKIVFTTRLVDVCGL--ME 174 (307)
Q Consensus 120 ~l~~~l~----~kr~LlVlDdv~~~-----------------~~~~~l~~~~~~~~--~~gs~IivTtr~~~v~~~--~~ 174 (307)
.++...+ ...+.+.+|+++.. ..+.++... +... ..+--++-+|...++... +.
T Consensus 391 rvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~e-mDgf~~~~~vi~~a~tnr~d~ld~allr 469 (774)
T KOG0731|consen 391 RVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVE-MDGFETSKGVIVLAATNRPDILDPALLR 469 (774)
T ss_pred HHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHH-hcCCcCCCcEEEEeccCCccccCHHhcC
Confidence 3344433 34578888887531 113343322 2221 223344455655555322 22
Q ss_pred ---ccceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChHHH
Q 041381 175 ---AQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLAL 226 (307)
Q Consensus 175 ---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai 226 (307)
-+..+.++.-+.....++|.-++.... ...+..++++ |+..-.|.+=|.
T Consensus 470 pGRfdr~i~i~~p~~~~r~~i~~~h~~~~~--~~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 470 PGRFDRQIQIDLPDVKGRASILKVHLRKKK--LDDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CCccccceeccCCchhhhHHHHHHHhhccC--CCcchhhHHH-HHhcCCCCcHHH
Confidence 245778888888899999999987655 2245566777 888888877654
No 183
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=27.59 E-value=1.2e+02 Score=25.05 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=17.8
Q ss_pred EEEEEeCcCC--HHHHhhcCCCCCCCCCCCeEEEEec
Q 041381 130 FLLLLDDIWE--RIDLAKVGVPFPASSRNASKIVFTT 164 (307)
Q Consensus 130 ~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~IivTt 164 (307)
-++|+|++.- ...+..+... .+ ..|+++|+.-
T Consensus 95 ~vliVDEasmv~~~~~~~ll~~-~~--~~~~klilvG 128 (196)
T PF13604_consen 95 DVLIVDEASMVDSRQLARLLRL-AK--KSGAKLILVG 128 (196)
T ss_dssp SEEEESSGGG-BHHHHHHHHHH-S---T-T-EEEEEE
T ss_pred cEEEEecccccCHHHHHHHHHH-HH--hcCCEEEEEC
Confidence 5899999864 3455555433 22 2467777654
No 184
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=27.40 E-value=2.1e+02 Score=25.03 Aligned_cols=52 Identities=6% Similarity=0.082 Sum_probs=38.9
Q ss_pred eecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChHHHHHHH
Q 041381 179 FKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALITTS 230 (307)
Q Consensus 179 ~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ig 230 (307)
|.+.|++.++....++...+......+--..+....|.....|.|.++..++
T Consensus 195 ~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~ 246 (269)
T COG3267 195 IELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLA 246 (269)
T ss_pred EecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHH
Confidence 8999999998888887777544422333345567888889999999998776
No 185
>PRK12377 putative replication protein; Provisional
Probab=27.24 E-value=46 Score=28.82 Aligned_cols=10 Identities=50% Similarity=0.501 Sum_probs=7.8
Q ss_pred eEEEEEeCcC
Q 041381 129 KFLLLLDDIW 138 (307)
Q Consensus 129 r~LlVlDdv~ 138 (307)
--|||+||+-
T Consensus 164 ~dLLiIDDlg 173 (248)
T PRK12377 164 VDLLVLDEIG 173 (248)
T ss_pred CCEEEEcCCC
Confidence 3489999993
No 186
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=27.00 E-value=77 Score=20.24 Aligned_cols=33 Identities=9% Similarity=0.295 Sum_probs=21.7
Q ss_pred ecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHH
Q 041381 180 KVECFADQDAWELFLKKVGQETLESHPDIPELAQTVA 216 (307)
Q Consensus 180 ~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~ 216 (307)
...++++++|++++.+.+-..+ ..+.+++..|+
T Consensus 24 ~~~g~~e~~A~~~Lr~~Am~~~----~~l~~vA~~ii 56 (56)
T PF03861_consen 24 ARYGLSEDEAYRLLRRQAMRRR----RSLADVAEEII 56 (56)
T ss_dssp HHHT--HHHHHHHHHHHHHHCT----S-HHHHHHHHH
T ss_pred HHhCcCHHHHHHHHHHHHHHcC----CCHHHHHHHHC
Confidence 3457899999999999885443 45667777664
No 187
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=26.27 E-value=89 Score=31.90 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=26.1
Q ss_pred CCceeeccccHHHHHHHHhcC---------CceEEEEEcCchh
Q 041381 84 QPTIIGLESTFDKVWRCLVEG---------QFGIIGLYGMGGK 117 (307)
Q Consensus 84 ~~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGi 117 (307)
...++|-++-++.+.+.+.-. ...+.-..|+.|+
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGV 532 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGV 532 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcc
Confidence 456899999999888887632 3557777899998
No 188
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=25.86 E-value=77 Score=27.54 Aligned_cols=29 Identities=31% Similarity=0.505 Sum_probs=18.5
Q ss_pred eEEEEEcCchh-----HHHHHHHh--cCCeEEEE-Ee
Q 041381 107 GIIGLYGMGGK-----ASGIFNLL--SKMKFLLL-LD 135 (307)
Q Consensus 107 ~vi~I~G~gGi-----~~~l~~~l--~~kr~LlV-lD 135 (307)
++|+|.|-||+ .-.+-..| +++|.|+| +|
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G~~VlliD~D 37 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVGCD 37 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 47899999999 22222222 36787777 44
No 189
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=24.81 E-value=1.8e+02 Score=29.36 Aligned_cols=34 Identities=24% Similarity=0.268 Sum_probs=28.1
Q ss_pred CCceeeccccHHHHHHHHhcC------CceEEEEEcCchh
Q 041381 84 QPTIIGLESTFDKVWRCLVEG------QFGIIGLYGMGGK 117 (307)
Q Consensus 84 ~~~~vGr~~~~~~l~~~L~~~------~~~vi~I~G~gGi 117 (307)
+.+-+|.++.+++|++.|.-. .-++++++|++|+
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGV 361 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGV 361 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCC
Confidence 555689999999999988521 4579999999999
No 190
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=24.75 E-value=58 Score=26.68 Aligned_cols=48 Identities=13% Similarity=0.054 Sum_probs=27.5
Q ss_pred HHHHHHhcC-CeEEEEEeCcCCHHH-----HhhcCCCCCCCCCCCeEEEEecCCh
Q 041381 119 SGIFNLLSK-MKFLLLLDDIWERID-----LAKVGVPFPASSRNASKIVFTTRLV 167 (307)
Q Consensus 119 ~~l~~~l~~-kr~LlVlDdv~~~~~-----~~~l~~~~~~~~~~gs~IivTtr~~ 167 (307)
+..++.+.. +--|+|||.+-..-. .+.+... +.....+.-||+|-|+.
T Consensus 105 ~~a~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~-L~~rp~~~evILTGR~~ 158 (178)
T PRK07414 105 QYTQAVVDEGRYSLVVLDELSLAIQFGLIPETEVLEF-LEKRPSHVDVILTGPEM 158 (178)
T ss_pred HHHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHH-HHhCCCCCEEEEECCCC
Confidence 344455544 445999999864321 1222211 33334567899999975
No 191
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=24.60 E-value=5.7e+02 Score=23.75 Aligned_cols=132 Identities=16% Similarity=0.211 Sum_probs=77.2
Q ss_pred eccccHHHHHHHHh----c---------CCceEEEEEcCchh---------------------------------HHHHH
Q 041381 89 GLESTFDKVWRCLV----E---------GQFGIIGLYGMGGK---------------------------------ASGIF 122 (307)
Q Consensus 89 Gr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGi---------------------------------~~~l~ 122 (307)
|-++.+++|.+... + +..+=|.++|++|. .+.++
T Consensus 155 GL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVR 234 (406)
T COG1222 155 GLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVR 234 (406)
T ss_pred CHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHH
Confidence 56777777776543 1 13567889999998 23333
Q ss_pred H---Hhc-CCeEEEEEeCcCCH-------------H---HHhhcCCCCCC--CCCCCeEEEEecCChhhhhc--ccc---
Q 041381 123 N---LLS-KMKFLLLLDDIWER-------------I---DLAKVGVPFPA--SSRNASKIVFTTRLVDVCGL--MEA--- 175 (307)
Q Consensus 123 ~---~l~-~kr~LlVlDdv~~~-------------~---~~~~l~~~~~~--~~~~gs~IivTtr~~~v~~~--~~~--- 175 (307)
+ .-+ ...+.|.+|.++.. + .+.++... +. +...+-|||..|...++... +.+
T Consensus 235 elF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~q-lDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~ 313 (406)
T COG1222 235 ELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQ-LDGFDPRGNVKVIMATNRPDILDPALLRPGRF 313 (406)
T ss_pred HHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHh-ccCCCCCCCeEEEEecCCccccChhhcCCCcc
Confidence 3 333 35688999998631 1 12222222 21 22456789998887776432 122
Q ss_pred cceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChHH
Q 041381 176 QKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLA 225 (307)
Q Consensus 176 ~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLa 225 (307)
+..+++..-+.+.-.++|+-+........+-+++ .|++.|.|.-=|
T Consensus 314 DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e----~la~~~~g~sGA 359 (406)
T COG1222 314 DRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLE----LLARLTEGFSGA 359 (406)
T ss_pred cceeecCCCCHHHHHHHHHHHhhhccCccCcCHH----HHHHhcCCCchH
Confidence 4467777666666677788777665544445554 456666666543
No 192
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=24.06 E-value=66 Score=26.69 Aligned_cols=48 Identities=17% Similarity=0.150 Sum_probs=27.9
Q ss_pred HHHHHHhcCC-eEEEEEeCcCCHHH-----HhhcCCCCCCCCCCCeEEEEecCCh
Q 041381 119 SGIFNLLSKM-KFLLLLDDIWERID-----LAKVGVPFPASSRNASKIVFTTRLV 167 (307)
Q Consensus 119 ~~l~~~l~~k-r~LlVlDdv~~~~~-----~~~l~~~~~~~~~~gs~IivTtr~~ 167 (307)
+..++.+... -=|+|||.+-..-. .+.+... +.....+.-||+|-|+.
T Consensus 105 ~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~-L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 105 EEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEA-LNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHH-HHcCCCCCEEEEECCCC
Confidence 3445555444 45999999964322 1222222 33334567899999986
No 193
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=23.95 E-value=2.8e+02 Score=20.65 Aligned_cols=64 Identities=23% Similarity=0.261 Sum_probs=39.6
Q ss_pred hHHHHHHH--HhCCCCCCCCCChHHHHHHHHHHCCCChHHHHHHHHHHcCCCC-hhHHHHHHHHHhh
Q 041381 188 DAWELFLK--KVGQETLESHPDIPELAQTVAKECSGLPLALITTSRAMSSKKR-PEERSYAIQMLRR 251 (307)
Q Consensus 188 e~~~Lf~~--~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ig~~L~~~~~-~~~w~~~l~~l~~ 251 (307)
+.|++=+. .++..+..+.|.+...|-+-+++..-.|+|+..+=+.-..-.+ .+.|..+++.++-
T Consensus 25 D~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lqElkP 91 (108)
T PF02284_consen 25 DGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQELKP 91 (108)
T ss_dssp -HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHHHHhh
Confidence 45555332 2344444677788888888899999999999988655432222 3378888887654
No 194
>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=23.10 E-value=1.8e+02 Score=27.20 Aligned_cols=48 Identities=15% Similarity=0.191 Sum_probs=35.8
Q ss_pred ccHHHHHHHHhcCC-----ceEEEEEcCchh-------HHHHHHHhcCCeEEEEEeCcCC
Q 041381 92 STFDKVWRCLVEGQ-----FGIIGLYGMGGK-------ASGIFNLLSKMKFLLLLDDIWE 139 (307)
Q Consensus 92 ~~~~~l~~~L~~~~-----~~vi~I~G~gGi-------~~~l~~~l~~kr~LlVlDdv~~ 139 (307)
.+...+.+.+.+.. +-|=+|.|-||+ ...|++.-++...++|+|.|..
T Consensus 191 nd~t~l~k~~~~h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~t 250 (433)
T KOG1401|consen 191 NDSTALEKLFESHKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQT 250 (433)
T ss_pred CCHHHHHHHHHhCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhh
Confidence 34677777666542 233378899999 6777777788899999999965
No 195
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=23.09 E-value=48 Score=27.00 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=27.1
Q ss_pred HHHHHHhcCCe-EEEEEeCcCCHHHH-----hhcCCCCCCCCCCCeEEEEecCCh
Q 041381 119 SGIFNLLSKMK-FLLLLDDIWERIDL-----AKVGVPFPASSRNASKIVFTTRLV 167 (307)
Q Consensus 119 ~~l~~~l~~kr-~LlVlDdv~~~~~~-----~~l~~~~~~~~~~gs~IivTtr~~ 167 (307)
+..++.+...+ =|+|||.+-..-.+ +.+... +.....+.-+|+|-|+.
T Consensus 87 ~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~l-L~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 87 QHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEA-LQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHH-HHhCCCCCEEEEECCCC
Confidence 33445554444 49999998532211 122111 22334567899999986
No 196
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=22.87 E-value=52 Score=30.92 Aligned_cols=30 Identities=20% Similarity=0.421 Sum_probs=25.3
Q ss_pred EEEcCchh-------HHHHHHHhcCCeEEEEEeCcCC
Q 041381 110 GLYGMGGK-------ASGIFNLLSKMKFLLLLDDIWE 139 (307)
Q Consensus 110 ~I~G~gGi-------~~~l~~~l~~kr~LlVlDdv~~ 139 (307)
+|.|+||+ .+.+++..+....|+|+|+|..
T Consensus 215 pi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~t 251 (433)
T PRK08117 215 PVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQT 251 (433)
T ss_pred CeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchh
Confidence 67899998 6777777778889999999965
No 197
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=22.48 E-value=1.2e+02 Score=26.55 Aligned_cols=27 Identities=33% Similarity=0.463 Sum_probs=18.0
Q ss_pred eEEEEEcCchh-----HHHHHHHh--cCCeEEEE
Q 041381 107 GIIGLYGMGGK-----ASGIFNLL--SKMKFLLL 133 (307)
Q Consensus 107 ~vi~I~G~gGi-----~~~l~~~l--~~kr~LlV 133 (307)
.+|+|+|-||+ .-.+-..| .|+|.|+|
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLli 35 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVV 35 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEE
Confidence 57889999999 22222222 57888877
No 198
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=22.44 E-value=2.6e+02 Score=26.38 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=19.4
Q ss_pred cccHHHHHHHHhcC---CceEEEEEcCchh
Q 041381 91 ESTFDKVWRCLVEG---QFGIIGLYGMGGK 117 (307)
Q Consensus 91 ~~~~~~l~~~L~~~---~~~vi~I~G~gGi 117 (307)
..-+..|+..+... ++.||+++|.-|=
T Consensus 173 GVGKStLLgMiar~t~aDv~ViaLIGERGR 202 (441)
T COG1157 173 GVGKSTLLGMIARNTEADVNVIALIGERGR 202 (441)
T ss_pred CCcHHHHHHHHhccccCCEEEEEEeeccch
Confidence 34556777776643 6889999998886
No 199
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=22.35 E-value=4.8e+02 Score=23.16 Aligned_cols=10 Identities=10% Similarity=0.381 Sum_probs=5.2
Q ss_pred CCCeEEEEec
Q 041381 155 RNASKIVFTT 164 (307)
Q Consensus 155 ~~gs~IivTt 164 (307)
.+.+.+|+++
T Consensus 92 ~~~~~li~~~ 101 (326)
T PRK07452 92 PENTHLLLTN 101 (326)
T ss_pred CCCcEEEEEe
Confidence 3455566643
No 200
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=22.34 E-value=49 Score=31.06 Aligned_cols=30 Identities=33% Similarity=0.479 Sum_probs=25.2
Q ss_pred EEEcCchh-------HHHHHHHhcCCeEEEEEeCcCC
Q 041381 110 GLYGMGGK-------ASGIFNLLSKMKFLLLLDDIWE 139 (307)
Q Consensus 110 ~I~G~gGi-------~~~l~~~l~~kr~LlVlDdv~~ 139 (307)
+|.|+||+ .+.+++..+....|+|+|+|..
T Consensus 206 pv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t 242 (425)
T PRK09264 206 TVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQA 242 (425)
T ss_pred cccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhh
Confidence 66799997 7777888888899999999974
No 201
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=22.30 E-value=2.5e+02 Score=25.41 Aligned_cols=40 Identities=8% Similarity=0.155 Sum_probs=26.5
Q ss_pred CeEEEEecCChh-hhhcc-cccceeecCCCCHHhHHHHHHHH
Q 041381 157 ASKIVFTTRLVD-VCGLM-EAQKTFKVECFADQDAWELFLKK 196 (307)
Q Consensus 157 gs~IivTtr~~~-v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~ 196 (307)
++.+|++|.+.. +...+ +-...+.+.+++.++..+.+...
T Consensus 143 ~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 143 QVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 455666666643 44332 23567899999999988877653
No 202
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=22.22 E-value=4.3e+02 Score=28.83 Aligned_cols=81 Identities=15% Similarity=0.037 Sum_probs=60.9
Q ss_pred eccccHHHHHHHHhcCCceEEEEEcCchhHHHHHHHhcCCeEEE-EEeCcCCHHHHhhcCCCCCCCCCCCeEEEEecCCh
Q 041381 89 GLESTFDKVWRCLVEGQFGIIGLYGMGGKASGIFNLLSKMKFLL-LLDDIWERIDLAKVGVPFPASSRNASKIVFTTRLV 167 (307)
Q Consensus 89 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGi~~~l~~~l~~kr~Ll-VlDdv~~~~~~~~l~~~~~~~~~~gs~IivTtr~~ 167 (307)
|.=+.+.-|...|...+.+++...-|-.+.+.|...|.-.-|+- =||.--..++-..+... |+....-.+.|+.||+-
T Consensus 1260 GKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmer-FNaD~RIfcfILSTrSg 1338 (1958)
T KOG0391|consen 1260 GKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMER-FNADRRIFCFILSTRSG 1338 (1958)
T ss_pred chHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHH-hcCCCceEEEEEeccCC
Confidence 33345556666777778999999999999999999998777664 48888777776666555 66666667788999987
Q ss_pred hhh
Q 041381 168 DVC 170 (307)
Q Consensus 168 ~v~ 170 (307)
.+.
T Consensus 1339 gvG 1341 (1958)
T KOG0391|consen 1339 GVG 1341 (1958)
T ss_pred ccc
Confidence 764
No 203
>PRK12403 putative aminotransferase; Provisional
Probab=21.76 E-value=51 Score=31.36 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=25.6
Q ss_pred EEEcCchh-------HHHHHHHhcCCeEEEEEeCcCC
Q 041381 110 GLYGMGGK-------ASGIFNLLSKMKFLLLLDDIWE 139 (307)
Q Consensus 110 ~I~G~gGi-------~~~l~~~l~~kr~LlVlDdv~~ 139 (307)
+|.|+||+ .+.+++..+....|+|+|+|..
T Consensus 230 pv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~t 266 (460)
T PRK12403 230 PFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIG 266 (460)
T ss_pred cccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence 67899997 7778888888899999999964
No 204
>PRK06062 hypothetical protein; Provisional
Probab=21.66 E-value=52 Score=31.24 Aligned_cols=30 Identities=20% Similarity=0.430 Sum_probs=25.5
Q ss_pred EEEcCchh-------HHHHHHHhcCCeEEEEEeCcCC
Q 041381 110 GLYGMGGK-------ASGIFNLLSKMKFLLLLDDIWE 139 (307)
Q Consensus 110 ~I~G~gGi-------~~~l~~~l~~kr~LlVlDdv~~ 139 (307)
+|.|+||+ .+.+++..+....|+|+|+|..
T Consensus 222 Pv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~t 258 (451)
T PRK06062 222 SVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMA 258 (451)
T ss_pred cccCCCCcccCCHHHHHHHHHHHHHcCCEEEeecccc
Confidence 67799998 7778888888899999999965
No 205
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=21.47 E-value=2.1e+02 Score=25.07 Aligned_cols=12 Identities=33% Similarity=0.609 Sum_probs=9.7
Q ss_pred CCeEEEEEeCcC
Q 041381 127 KMKFLLLLDDIW 138 (307)
Q Consensus 127 ~kr~LlVlDdv~ 138 (307)
+|+.++.+||+.
T Consensus 99 ~k~lv~fiDDlN 110 (272)
T PF12775_consen 99 GKKLVLFIDDLN 110 (272)
T ss_dssp SSEEEEEEETTT
T ss_pred CcEEEEEecccC
Confidence 467888999995
No 206
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=21.14 E-value=1.8e+02 Score=25.60 Aligned_cols=21 Identities=14% Similarity=0.369 Sum_probs=13.9
Q ss_pred cCCeEEEEEeCcCCH-HHHhhc
Q 041381 126 SKMKFLLLLDDIWER-IDLAKV 146 (307)
Q Consensus 126 ~~kr~LlVlDdv~~~-~~~~~l 146 (307)
+++++|+++||+-.. ..+.++
T Consensus 159 ~G~~Vlvl~DslTr~A~A~rEi 180 (274)
T cd01132 159 NGKHALIIYDDLSKQAVAYRQM 180 (274)
T ss_pred CCCCEEEEEcChHHHHHHHHHH
Confidence 478888888888653 234443
No 207
>PRK09183 transposase/IS protein; Provisional
Probab=20.96 E-value=61 Score=28.18 Aligned_cols=11 Identities=36% Similarity=0.440 Sum_probs=8.6
Q ss_pred eEEEEEeCcCC
Q 041381 129 KFLLLLDDIWE 139 (307)
Q Consensus 129 r~LlVlDdv~~ 139 (307)
.-++|+||+..
T Consensus 165 ~dlLiiDdlg~ 175 (259)
T PRK09183 165 PRLLIIDEIGY 175 (259)
T ss_pred CCEEEEccccc
Confidence 35899999963
No 208
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=20.88 E-value=1.6e+02 Score=22.36 Aligned_cols=31 Identities=26% Similarity=0.317 Sum_probs=20.2
Q ss_pred eEEEEEcCchhHHHHHHHhc--CCeEEEEEeCc
Q 041381 107 GIIGLYGMGGKASGIFNLLS--KMKFLLLLDDI 137 (307)
Q Consensus 107 ~vi~I~G~gGi~~~l~~~l~--~kr~LlVlDdv 137 (307)
.-|.|+|.||+-..+-..|. +-.-+.++|+-
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 35889999999555555542 55566677653
No 209
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=20.64 E-value=1.7e+02 Score=22.42 Aligned_cols=28 Identities=36% Similarity=0.364 Sum_probs=18.1
Q ss_pred EEEEcCchhHHHHHHHh--cCCeEEEEEeC
Q 041381 109 IGLYGMGGKASGIFNLL--SKMKFLLLLDD 136 (307)
Q Consensus 109 i~I~G~gGi~~~l~~~l--~~kr~LlVlDd 136 (307)
|.|+|.||+-..+-+.| .+-.-+.++|+
T Consensus 2 VliiG~GglGs~ia~~L~~~Gv~~i~ivD~ 31 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVGKITLIDF 31 (143)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEcC
Confidence 67999999955554444 24455666665
No 210
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=20.63 E-value=1.5e+02 Score=24.96 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=15.2
Q ss_pred HHHHHHHhcCCeEEEEEeCcCC
Q 041381 118 ASGIFNLLSKMKFLLLLDDIWE 139 (307)
Q Consensus 118 ~~~l~~~l~~kr~LlVlDdv~~ 139 (307)
++.+++ ++++.|+++||+-.
T Consensus 97 AEyfrd--~G~dVlli~Dsltr 116 (215)
T PF00006_consen 97 AEYFRD--QGKDVLLIIDSLTR 116 (215)
T ss_dssp HHHHHH--TTSEEEEEEETHHH
T ss_pred hHHHhh--cCCceeehhhhhHH
Confidence 444444 79999999999954
No 211
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=20.61 E-value=90 Score=26.21 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=21.4
Q ss_pred eEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEEEecCC
Q 041381 129 KFLLLLDDIWER--IDLAKVGVPFPASSRNASKIVFTTRL 166 (307)
Q Consensus 129 r~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IivTtr~ 166 (307)
..+||+|++.+. .++..+.. ..+.|||+|++--.
T Consensus 120 ~~~iIvDEaQN~t~~~~k~ilT----R~g~~skii~~GD~ 155 (205)
T PF02562_consen 120 NAFIIVDEAQNLTPEELKMILT----RIGEGSKIIITGDP 155 (205)
T ss_dssp SEEEEE-SGGG--HHHHHHHHT----TB-TT-EEEEEE--
T ss_pred ceEEEEecccCCCHHHHHHHHc----ccCCCcEEEEecCc
Confidence 579999999874 46776643 35789999998754
No 212
>PRK14700 recombination factor protein RarA; Provisional
Probab=20.42 E-value=3.7e+02 Score=24.05 Aligned_cols=69 Identities=14% Similarity=0.074 Sum_probs=43.6
Q ss_pred CCCeEEEE--ecCChhhh---hcccccceeecCCCCHHhHHHHHHHHhCCCC-C--CCCCChHHHHHHHHHHCCCCh
Q 041381 155 RNASKIVF--TTRLVDVC---GLMEAQKTFKVECFADQDAWELFLKKVGQET-L--ESHPDIPELAQTVAKECSGLP 223 (307)
Q Consensus 155 ~~gs~Iiv--Ttr~~~v~---~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~-~--~~~~~l~~~~~~i~~~c~GlP 223 (307)
.+|.-++| ||.|.... ...+-.+++.+++|+.++-.+++.+...... . ..-.-..+....|++.|+|--
T Consensus 5 E~G~i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GDa 81 (300)
T PRK14700 5 ESGKIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGDC 81 (300)
T ss_pred cCCcEEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCHH
Confidence 44555554 66665431 1223457899999999999999998774211 0 011223567788899998854
No 213
>PRK06526 transposase; Provisional
Probab=20.33 E-value=62 Score=28.09 Aligned_cols=11 Identities=27% Similarity=0.320 Sum_probs=8.5
Q ss_pred eEEEEEeCcCC
Q 041381 129 KFLLLLDDIWE 139 (307)
Q Consensus 129 r~LlVlDdv~~ 139 (307)
.-|||+||+..
T Consensus 160 ~dlLIIDD~g~ 170 (254)
T PRK06526 160 YPLLIVDEVGY 170 (254)
T ss_pred CCEEEEccccc
Confidence 35899999963
No 214
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=20.26 E-value=2.4e+02 Score=24.95 Aligned_cols=15 Identities=20% Similarity=0.306 Sum_probs=12.0
Q ss_pred cCCeEEEEEeCcCCH
Q 041381 126 SKMKFLLLLDDIWER 140 (307)
Q Consensus 126 ~~kr~LlVlDdv~~~ 140 (307)
+++++|+++||+-..
T Consensus 164 ~g~~VLl~~D~ltr~ 178 (276)
T cd01135 164 KGKHVLVILTDMTNY 178 (276)
T ss_pred cCCeEEEEEcChhHH
Confidence 478999999998653
No 215
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=20.25 E-value=1.1e+02 Score=26.58 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=18.1
Q ss_pred eEEEEEcCchh-----HHHHHHHh--cCCeEEEE
Q 041381 107 GIIGLYGMGGK-----ASGIFNLL--SKMKFLLL 133 (307)
Q Consensus 107 ~vi~I~G~gGi-----~~~l~~~l--~~kr~LlV 133 (307)
++|+|.|-||+ .-.+-..| .|+|.|+|
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlI 35 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVV 35 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 57888899999 22222223 57888887
Done!