Query 041381
Match_columns 307
No_of_seqs 240 out of 2156
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 10:45:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041381.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041381hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2.6E-35 8.8E-40 282.7 6.1 199 88-307 131-413 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 8.4E-32 2.9E-36 279.6 21.5 209 84-307 123-407 (1249)
3 1vt4_I APAF-1 related killer D 100.0 6.6E-30 2.3E-34 252.9 15.7 191 85-307 128-399 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 5.2E-28 1.8E-32 233.9 19.1 208 84-307 123-407 (591)
5 1w5s_A Origin recognition comp 98.7 2.2E-08 7.5E-13 91.7 8.5 149 127-289 137-320 (412)
6 2qen_A Walker-type ATPase; unk 98.7 9.9E-08 3.4E-12 85.2 11.7 144 84-234 11-250 (350)
7 2fna_A Conserved hypothetical 98.7 2.4E-08 8.4E-13 89.3 7.1 109 128-242 137-262 (357)
8 1njg_A DNA polymerase III subu 98.5 9.1E-07 3.1E-11 74.2 10.8 145 85-233 23-231 (250)
9 3qfl_A MLA10; coiled-coil, (CC 98.4 9.8E-07 3.3E-11 66.1 7.0 28 2-29 57-84 (115)
10 2chg_A Replication factor C sm 98.2 7.1E-06 2.4E-10 67.7 9.7 142 85-230 17-204 (226)
11 1sxj_B Activator 1 37 kDa subu 98.0 1.9E-05 6.4E-10 69.5 9.6 143 85-231 21-211 (323)
12 2qby_A CDC6 homolog 1, cell di 98.0 3E-05 1E-09 69.7 11.1 143 84-228 19-243 (386)
13 2v1u_A Cell division control p 98.0 7.7E-05 2.6E-09 67.1 13.1 186 84-287 18-300 (387)
14 2qby_B CDC6 homolog 3, cell di 97.7 0.001 3.5E-08 59.8 16.0 182 85-288 20-295 (384)
15 1iqp_A RFCS; clamp loader, ext 97.6 0.00027 9.2E-09 62.1 9.9 145 85-233 25-215 (327)
16 2chq_A Replication factor C sm 97.5 0.0013 4.5E-08 57.4 12.1 142 85-230 17-204 (319)
17 1fnn_A CDC6P, cell division co 97.4 0.00087 3E-08 60.3 10.5 144 84-229 16-246 (389)
18 1jr3_A DNA polymerase III subu 97.3 0.0019 6.6E-08 57.7 11.5 142 85-230 16-221 (373)
19 1hqc_A RUVB; extended AAA-ATPa 97.3 0.0073 2.5E-07 52.8 14.7 146 85-233 12-214 (324)
20 1d2n_A N-ethylmaleimide-sensit 96.5 0.088 3E-06 44.8 14.5 158 85-252 33-264 (272)
21 3h4m_A Proteasome-activating n 96.4 0.015 5.1E-07 49.9 9.1 139 85-228 17-229 (285)
22 1sxj_A Activator 1 95 kDa subu 96.2 0.03 1E-06 52.7 11.1 139 85-229 39-252 (516)
23 1sxj_D Activator 1 41 kDa subu 96.0 0.032 1.1E-06 49.2 9.7 141 85-229 37-234 (353)
24 1jbk_A CLPB protein; beta barr 95.8 0.0037 1.3E-07 49.7 2.2 33 85-117 22-54 (195)
25 3bos_A Putative DNA replicatio 95.7 0.024 8.2E-07 46.9 7.1 142 85-230 28-217 (242)
26 2qz4_A Paraplegin; AAA+, SPG7, 95.5 0.4 1.4E-05 40.0 14.2 142 85-229 6-221 (262)
27 3pfi_A Holliday junction ATP-d 95.3 0.42 1.4E-05 41.7 14.1 142 85-229 29-226 (338)
28 3d8b_A Fidgetin-like protein 1 95.2 0.29 9.9E-06 43.5 12.8 142 85-230 84-295 (357)
29 3pvs_A Replication-associated 95.0 0.16 5.6E-06 46.7 10.9 143 85-229 26-214 (447)
30 3u61_B DNA polymerase accessor 95.0 0.052 1.8E-06 47.4 7.3 141 85-228 26-214 (324)
31 3eie_A Vacuolar protein sortin 94.7 0.57 2E-05 40.8 13.1 142 85-230 18-228 (322)
32 3vfd_A Spastin; ATPase, microt 94.4 0.63 2.2E-05 41.7 13.0 143 85-230 115-326 (389)
33 2z4s_A Chromosomal replication 94.2 0.14 4.9E-06 46.9 8.3 97 128-228 194-304 (440)
34 2qp9_X Vacuolar protein sortin 94.1 0.94 3.2E-05 40.1 13.3 142 85-229 51-260 (355)
35 3cf0_A Transitional endoplasmi 94.0 1 3.4E-05 38.8 13.1 135 85-225 15-223 (301)
36 3syl_A Protein CBBX; photosynt 94.0 0.057 1.9E-06 46.7 5.0 69 129-198 131-218 (309)
37 1sxj_E Activator 1 40 kDa subu 93.9 0.13 4.3E-06 45.5 7.2 100 128-230 134-237 (354)
38 2zan_A Vacuolar protein sortin 93.6 2.2 7.4E-05 39.1 15.2 142 85-230 134-345 (444)
39 1xwi_A SKD1 protein; VPS4B, AA 93.6 1.6 5.5E-05 38.0 13.6 143 85-230 12-223 (322)
40 3b9p_A CG5977-PA, isoform A; A 93.4 1.2 4.2E-05 37.9 12.4 140 85-229 21-232 (297)
41 3uk6_A RUVB-like 2; hexameric 93.2 0.79 2.7E-05 40.4 11.3 49 177-228 252-301 (368)
42 1a5t_A Delta prime, HOLB; zinc 92.0 2 7E-05 37.5 12.1 94 127-229 107-204 (334)
43 3te6_A Regulatory protein SIR3 91.3 0.24 8.2E-06 43.4 5.2 21 177-197 191-211 (318)
44 3pxg_A Negative regulator of g 91.2 2.4 8.2E-05 39.0 12.2 108 86-198 181-339 (468)
45 1sxj_C Activator 1 40 kDa subu 90.7 1.1 3.8E-05 39.2 9.1 139 86-228 26-210 (340)
46 3pxi_A Negative regulator of g 90.2 4 0.00014 40.0 13.3 108 86-198 181-339 (758)
47 1r6b_X CLPA protein; AAA+, N-t 89.4 2 6.9E-05 42.1 10.5 110 85-197 186-362 (758)
48 3hu3_A Transitional endoplasmi 88.5 3.5 0.00012 38.2 10.9 138 86-229 205-414 (489)
49 1qvr_A CLPB protein; coiled co 88.1 0.6 2E-05 46.6 5.8 32 86-117 171-202 (854)
50 2r62_A Cell division protease 88.0 0.92 3.1E-05 38.1 6.2 135 85-224 11-219 (268)
51 2gno_A DNA polymerase III, gam 86.1 2 6.9E-05 37.2 7.4 69 127-197 81-152 (305)
52 4b4t_J 26S protease regulatory 84.0 11 0.00039 33.9 11.4 135 86-225 149-356 (405)
53 1l8q_A Chromosomal replication 83.8 12 0.0004 32.2 11.4 91 129-225 99-203 (324)
54 4b4t_L 26S protease subunit RP 83.2 10 0.00035 34.5 11.0 134 86-224 182-388 (437)
55 1in4_A RUVB, holliday junction 82.7 13 0.00044 32.2 11.2 96 178-276 174-277 (334)
56 1jr3_D DNA polymerase III, del 82.6 8.1 0.00028 33.5 9.9 100 126-229 74-184 (343)
57 4b4t_H 26S protease regulatory 82.3 14 0.00048 33.9 11.5 133 86-223 210-415 (467)
58 2p65_A Hypothetical protein PF 79.8 3.4 0.00012 31.8 5.8 33 85-117 22-54 (187)
59 4b4t_M 26S protease regulatory 79.8 8.8 0.0003 34.9 9.2 133 86-223 182-387 (434)
60 4b4t_I 26S protease regulatory 79.4 15 0.00051 33.4 10.5 133 86-223 183-388 (437)
61 2ce7_A Cell division protein F 76.1 14 0.00048 34.0 9.6 134 85-223 16-221 (476)
62 1lv7_A FTSH; alpha/beta domain 69.0 46 0.0016 27.1 10.7 68 156-227 149-222 (257)
63 3cf2_A TER ATPase, transitiona 62.2 53 0.0018 32.4 10.7 134 86-224 205-408 (806)
64 4b4t_K 26S protease regulatory 60.0 44 0.0015 30.2 9.1 133 86-223 173-379 (428)
65 3ro3_B Minsc, peptide of prote 59.9 4.5 0.00015 19.6 1.3 10 2-11 10-19 (22)
66 1ypw_A Transitional endoplasmi 56.1 79 0.0027 31.1 10.9 131 86-222 205-406 (806)
67 3pxi_A Negative regulator of g 55.6 13 0.00043 36.4 5.1 113 85-197 491-675 (758)
68 1ojl_A Transcriptional regulat 55.2 25 0.00085 30.0 6.5 33 85-117 2-36 (304)
69 2cxn_A Glucose-6-phosphate iso 53.2 57 0.0019 30.6 8.8 56 106-166 149-212 (557)
70 3ljk_A Glucose-6-phosphate iso 53.0 47 0.0016 31.0 8.2 57 106-166 140-203 (543)
71 4em6_D Glucose-6-phosphate iso 50.5 48 0.0017 31.0 7.8 57 106-166 150-212 (553)
72 3hjb_A Glucose-6-phosphate iso 50.0 50 0.0017 31.0 7.9 57 106-166 172-234 (574)
73 4fcw_A Chaperone protein CLPB; 48.9 11 0.00038 31.9 3.1 32 86-117 18-58 (311)
74 3ujh_A Glucose-6-phosphate iso 46.7 55 0.0019 30.7 7.6 57 106-166 151-219 (567)
75 1b0z_A Protein (phosphoglucose 46.2 27 0.00091 31.9 5.3 58 105-166 71-140 (445)
76 1g5t_A COB(I)alamin adenosyltr 42.4 24 0.00083 28.2 4.0 46 118-167 109-163 (196)
77 2wu8_A Glucose-6-phosphate iso 42.4 45 0.0015 31.2 6.3 58 105-166 142-206 (549)
78 1t10_A GPI, glucose-6-phosphat 41.5 1E+02 0.0035 29.2 8.6 57 106-166 196-259 (605)
79 2o2c_A GPI, glucose-6-phosphat 40.0 58 0.002 30.9 6.7 57 106-166 197-260 (613)
80 3ff1_A Glucose-6-phosphate iso 37.4 37 0.0013 30.9 4.7 34 106-139 76-120 (446)
81 3qki_A Glucose-6-phosphate iso 37.4 52 0.0018 31.1 5.9 12 106-117 166-177 (597)
82 1zzg_A Glucose-6-phosphate iso 35.5 61 0.0021 29.1 5.9 46 92-139 54-103 (415)
83 3fwy_A Light-independent proto 35.3 34 0.0012 29.4 4.1 30 104-133 46-82 (314)
84 2vda_B Maltoporin; sugar trans 34.6 23 0.0008 17.9 1.7 17 220-236 9-25 (28)
85 3m6a_A ATP-dependent protease 34.4 1.1E+02 0.0036 28.5 7.6 41 157-197 224-266 (543)
86 2q8n_A Glucose-6-phosphate iso 31.7 1E+02 0.0036 28.0 6.8 44 94-139 68-127 (460)
87 2gkw_B Tumor necrosis factor r 31.4 32 0.0011 17.3 1.8 18 151-168 4-21 (26)
88 2dhr_A FTSH; AAA+ protein, hex 23.4 4.3E+02 0.015 24.2 12.1 134 85-223 31-236 (499)
89 3sf4_D Protein inscuteable hom 23.1 28 0.00097 20.7 0.9 9 2-10 11-19 (52)
90 2w58_A DNAI, primosome compone 22.8 42 0.0014 26.1 2.3 25 93-117 37-65 (202)
91 1v54_E Cytochrome C oxidase po 22.6 1.7E+02 0.0057 20.8 4.9 64 188-251 25-91 (109)
92 3jvv_A Twitching mobility prot 22.1 95 0.0033 27.1 4.6 50 118-171 186-235 (356)
93 2c9o_A RUVB-like 1; hexameric 21.9 2.4E+02 0.008 25.3 7.4 51 177-230 359-410 (456)
94 2c9o_A RUVB-like 1; hexameric 21.9 1E+02 0.0035 27.8 5.0 33 85-117 37-74 (456)
95 1vcs_A Vesicle transport throu 20.8 2.2E+02 0.0074 19.8 7.1 52 4-63 38-89 (102)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.6e-35 Score=282.70 Aligned_cols=199 Identities=18% Similarity=0.190 Sum_probs=161.7
Q ss_pred eeccccHHHHHHHHhcC---CceEEEEEcCchh---------H-------------------------------------
Q 041381 88 IGLESTFDKVWRCLVEG---QFGIIGLYGMGGK---------A------------------------------------- 118 (307)
Q Consensus 88 vGr~~~~~~l~~~L~~~---~~~vi~I~G~gGi---------~------------------------------------- 118 (307)
|||+.++++|.++|..+ +.++|+|+||||+ .
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 59999999999999754 6899999999999 1
Q ss_pred ----------------------HHHHHHhcCC-eEEEEEeCcCCHHHHhhcCCCCCCCCCCCeEEEEecCChhhhhccc-
Q 041381 119 ----------------------SGIFNLLSKM-KFLLLLDDIWERIDLAKVGVPFPASSRNASKIVFTTRLVDVCGLME- 174 (307)
Q Consensus 119 ----------------------~~l~~~l~~k-r~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IivTtr~~~v~~~~~- 174 (307)
..+++.|+++ ||||||||||+.+++ . ++. .+||+||||||+..++..++
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~-----~~~-~~gs~ilvTTR~~~v~~~~~~ 283 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-R-----WAQ-ELRLRCLVTTRDVEISNAASQ 283 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-H-----HHH-HTTCEEEEEESBGGGGGGCCS
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-c-----ccc-cCCCEEEEEcCCHHHHHHcCC
Confidence 2344566775 999999999998865 1 211 26899999999999998876
Q ss_pred ccceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChHHHHHHHHHHcCCCChhHHHHHHHHHhhccc
Q 041381 175 AQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALITTSRAMSSKKRPEERSYAIQMLRRSAY 254 (307)
Q Consensus 175 ~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ig~~L~~~~~~~~w~~~l~~l~~~~~ 254 (307)
....|++++|+.++||+||.+.++... .++.+.+++++|+++|+|+||||+++|+.|+.+ + |+.+ +.+.+..+
T Consensus 284 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l~~~l~ 356 (549)
T 2a5y_B 284 TCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQLNNKLE 356 (549)
T ss_dssp CEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHHHHHHH
T ss_pred CCeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH-HHhHHHhh
Confidence 346799999999999999999987654 247788999999999999999999999999874 2 5443 45544433
Q ss_pred cCCCChhHHHHHHHHhhcCCCCCchhHHHh-----------hhcCCCCCccccHHHHHHHhhcC
Q 041381 255 EFPGMEKEVFRLLKFSYDSLSSDVLRSCLL-----------YCSLFPEDYQISKTELIECWIGE 307 (307)
Q Consensus 255 ~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl-----------~~a~fp~~~~i~~~~Li~~WiaE 307 (307)
... .+.+..++.+||+.||+ ++|.||+ |||+||+++.|+ +++|+||
T Consensus 357 ~~~--~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~ 413 (549)
T 2a5y_B 357 SRG--LVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCV 413 (549)
T ss_dssp HHC--SSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHH
T ss_pred ccc--HHHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeee
Confidence 211 23577889999999999 5999999 999999999999 8899985
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.98 E-value=8.4e-32 Score=279.63 Aligned_cols=209 Identities=22% Similarity=0.347 Sum_probs=175.1
Q ss_pred CCceeeccccHHHHHHHHhc--CCceEEEEEcCchh--------------------------------------------
Q 041381 84 QPTIIGLESTFDKVWRCLVE--GQFGIIGLYGMGGK-------------------------------------------- 117 (307)
Q Consensus 84 ~~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGi-------------------------------------------- 117 (307)
++.||||++++++|.++|.. ++.++|+|+||||+
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 202 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNL 202 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHH
T ss_pred CceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHH
Confidence 46699999999999999964 47899999999999
Q ss_pred ---------------------HHHHHHHhcCC--eEEEEEeCcCCHHHHhhcCCCCCCCCCCCeEEEEecCChhhhhc-c
Q 041381 118 ---------------------ASGIFNLLSKM--KFLLLLDDIWERIDLAKVGVPFPASSRNASKIVFTTRLVDVCGL-M 173 (307)
Q Consensus 118 ---------------------~~~l~~~l~~k--r~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IivTtr~~~v~~~-~ 173 (307)
.+.++..+.++ |+||||||||+..+|..+ ++||+||||||++.++.. +
T Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~--------~~~~~ilvTtR~~~~~~~~~ 274 (1249)
T 3sfz_A 203 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF--------DNQCQILLTTRDKSVTDSVM 274 (1249)
T ss_dssp HHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT--------CSSCEEEEEESSTTTTTTCC
T ss_pred HHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh--------cCCCEEEEEcCCHHHHHhhc
Confidence 23344555555 999999999999888753 468999999999999854 4
Q ss_pred cccceeecCC-CCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChHHHHHHHHHHcCCCChhHHHHHHHHHhhc
Q 041381 174 EAQKTFKVEC-FADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALITTSRAMSSKKRPEERSYAIQMLRRS 252 (307)
Q Consensus 174 ~~~~~~~l~~-L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ig~~L~~~~~~~~w~~~l~~l~~~ 252 (307)
+....+.+++ |+++||++||...++... +.+.+++++|+++|+|+||||+++|++|+.+. ..|...++.+...
T Consensus 275 ~~~~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~ 348 (1249)
T 3sfz_A 275 GPKHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNK 348 (1249)
T ss_dssp SCBCCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSC
T ss_pred CCceEEEecCCCCHHHHHHHHHHhhCCCh----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhh
Confidence 5667889996 999999999999986543 44567899999999999999999999999744 5799998888765
Q ss_pred cccC-----CCChhHHHHHHHHhhcCCCCCchhHHHhhhcCCCCCccccHHHHHHHhhcC
Q 041381 253 AYEF-----PGMEKEVFRLLKFSYDSLSSDVLRSCLLYCSLFPEDYQISKTELIECWIGE 307 (307)
Q Consensus 253 ~~~~-----~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~a~fp~~~~i~~~~Li~~WiaE 307 (307)
.+.. ....+.+..+|.+||+.||++ .|.||+|||+||+++.|+++.|+++|.+|
T Consensus 349 ~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~ 407 (1249)
T 3sfz_A 349 QFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLE 407 (1249)
T ss_dssp CCCCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCC
T ss_pred hhhhcccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCCC
Confidence 4321 122347999999999999995 99999999999999999999999999875
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.96 E-value=6.6e-30 Score=252.91 Aligned_cols=191 Identities=18% Similarity=0.198 Sum_probs=156.1
Q ss_pred CceeeccccHHHHHHHHhc-CCceEEEEEcCchh-----------------------------------------HH---
Q 041381 85 PTIIGLESTFDKVWRCLVE-GQFGIIGLYGMGGK-----------------------------------------AS--- 119 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~~-~~~~vi~I~G~gGi-----------------------------------------~~--- 119 (307)
+..|||+.++++|.++|.. ++.++|+|+||||+ .+
T Consensus 128 k~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~ 207 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 3459999999999999987 46899999999999 00
Q ss_pred -------------------------HHHHHh---cCCeEEEEEeCcCCHHHHhhcCCCCCCCCCCCeEEEEecCChhhhh
Q 041381 120 -------------------------GIFNLL---SKMKFLLLLDDIWERIDLAKVGVPFPASSRNASKIVFTTRLVDVCG 171 (307)
Q Consensus 120 -------------------------~l~~~l---~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IivTtr~~~v~~ 171 (307)
.+++.| .+||+||||||||+.+.|..+ + +||+||||||++.++.
T Consensus 208 ~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-----~---pGSRILVTTRd~~Va~ 279 (1221)
T 1vt4_I 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-----N---LSCKILLTTRFKQVTD 279 (1221)
T ss_dssp HHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-----H---SSCCEEEECSCSHHHH
T ss_pred hcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh-----C---CCeEEEEeccChHHHH
Confidence 122323 469999999999999999864 1 5899999999999987
Q ss_pred cccccceeecC------CCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChHHHHHHHHHHcCCC-ChhHHHH
Q 041381 172 LMEAQKTFKVE------CFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALITTSRAMSSKK-RPEERSY 244 (307)
Q Consensus 172 ~~~~~~~~~l~------~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ig~~L~~~~-~~~~w~~ 244 (307)
.+.....+.++ +|+.+|||+||.+.++.. ..++..+| |+|+||||+++|+.|+.+. +.++|+.
T Consensus 280 ~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~ 349 (1221)
T 1vt4_I 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKH 349 (1221)
T ss_dssp HHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHH
T ss_pred hcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhc
Confidence 55444467777 999999999999986432 12233444 9999999999999999853 6778865
Q ss_pred HHHHHhhccccCCCChhHHHHHHHHhhcCCCCCch-hHHHhhhcCCCCCccccHHHHHHHhhcC
Q 041381 245 AIQMLRRSAYEFPGMEKEVFRLLKFSYDSLSSDVL-RSCLLYCSLFPEDYQISKTELIECWIGE 307 (307)
Q Consensus 245 ~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~-k~cfl~~a~fp~~~~i~~~~Li~~WiaE 307 (307)
. ..+.+..+|.+||+.||++ . |.||+|||+||+++.|+++.|+.+|++|
T Consensus 350 ~-------------~~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~ae 399 (1221)
T 1vt4_I 350 V-------------NCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399 (1221)
T ss_dssp C-------------SCHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSS
T ss_pred C-------------ChhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCC
Confidence 2 1358999999999999995 8 9999999999999999999999999975
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.96 E-value=5.2e-28 Score=233.92 Aligned_cols=208 Identities=21% Similarity=0.344 Sum_probs=166.3
Q ss_pred CCceeeccccHHHHHHHHhc--CCceEEEEEcCchh--------------------------------------------
Q 041381 84 QPTIIGLESTFDKVWRCLVE--GQFGIIGLYGMGGK-------------------------------------------- 117 (307)
Q Consensus 84 ~~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGi-------------------------------------------- 117 (307)
++.||||+.++++|.++|.. ++.++|+|+||||+
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~~l 202 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNL 202 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHHHH
Confidence 56799999999999999984 46889999999999
Q ss_pred ---------------------HHHHHHHhcC--CeEEEEEeCcCCHHHHhhcCCCCCCCCCCCeEEEEecCChhhhhccc
Q 041381 118 ---------------------ASGIFNLLSK--MKFLLLLDDIWERIDLAKVGVPFPASSRNASKIVFTTRLVDVCGLME 174 (307)
Q Consensus 118 ---------------------~~~l~~~l~~--kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IivTtr~~~v~~~~~ 174 (307)
...+++.+.+ +++||||||+|+...+..+ .+|++||||||+..++..+.
T Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l--------~~~~~ilvTsR~~~~~~~~~ 274 (591)
T 1z6t_A 203 CTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF--------DSQCQILLTTRDKSVTDSVM 274 (591)
T ss_dssp HHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT--------CSSCEEEEEESCGGGGTTCC
T ss_pred HHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh--------cCCCeEEEECCCcHHHHhcC
Confidence 1112223333 6899999999998877643 35799999999999877543
Q ss_pred ccceeec---CCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChHHHHHHHHHHcCCCChhHHHHHHHHHhh
Q 041381 175 AQKTFKV---ECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALITTSRAMSSKKRPEERSYAIQMLRR 251 (307)
Q Consensus 175 ~~~~~~l---~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ig~~L~~~~~~~~w~~~l~~l~~ 251 (307)
...+.+ ++|+.+|+++||...++... ....+.+.+|+++|+|+|||+..+|+.|+.+ ..+|...++.+..
T Consensus 275 -~~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~l~~ 347 (591)
T 1z6t_A 275 -GPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQLQN 347 (591)
T ss_dssp -SCEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHHHHS
T ss_pred -CCceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcC--chhHHHHHHHHHH
Confidence 234444 58999999999999987532 2234578999999999999999999999874 3479988888876
Q ss_pred cccc-----CCCChhHHHHHHHHhhcCCCCCchhHHHhhhcCCCCCccccHHHHHHHhhcC
Q 041381 252 SAYE-----FPGMEKEVFRLLKFSYDSLSSDVLRSCLLYCSLFPEDYQISKTELIECWIGE 307 (307)
Q Consensus 252 ~~~~-----~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~a~fp~~~~i~~~~Li~~WiaE 307 (307)
.... .......+..++..||+.||++ .|.||++||+||+++.|+.+.|..+|.++
T Consensus 348 ~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~ 407 (591)
T 1z6t_A 348 KQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDME 407 (591)
T ss_dssp CCCCCSSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCC
T ss_pred hHHHHhhhccccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhccC
Confidence 4321 1123358999999999999995 99999999999999999999999999764
No 5
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.73 E-value=2.2e-08 Score=91.71 Aligned_cols=149 Identities=11% Similarity=0.067 Sum_probs=81.5
Q ss_pred CCeEEEEEeCcCCH--------HHHhhcCCCC--CCCCC--CCeEEEEecCChhhhhccc---------ccceeecCCCC
Q 041381 127 KMKFLLLLDDIWER--------IDLAKVGVPF--PASSR--NASKIVFTTRLVDVCGLME---------AQKTFKVECFA 185 (307)
Q Consensus 127 ~kr~LlVlDdv~~~--------~~~~~l~~~~--~~~~~--~gs~IivTtr~~~v~~~~~---------~~~~~~l~~L~ 185 (307)
+++++||+||++.. ..+..+...+ ++..+ ....+|+||+...+...+. ....+.+.+++
T Consensus 137 ~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~ 216 (412)
T 1w5s_A 137 NHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYK 216 (412)
T ss_dssp TCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCC
T ss_pred CCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCC
Confidence 46899999999763 2233222210 11112 4556888887655321111 12238999999
Q ss_pred HHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCC------CChHHHHHHHHHH-c-----CC--CChhHHHHHHHHHhh
Q 041381 186 DQDAWELFLKKVGQETLESHPDIPELAQTVAKECS------GLPLALITTSRAM-S-----SK--KRPEERSYAIQMLRR 251 (307)
Q Consensus 186 ~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~------GlPLai~~ig~~L-~-----~~--~~~~~w~~~l~~l~~ 251 (307)
.++.+++|...+.... ....--.+....|++.|+ |.|..+..+.... . .. -+.+.+..++.....
T Consensus 217 ~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~ 295 (412)
T 1w5s_A 217 SRELYTILEQRAELGL-RDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA 295 (412)
T ss_dssp HHHHHHHHHHHHHHHB-CTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhcC-CCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Confidence 9999999976643111 011122567788999999 9997655544321 1 11 123344433322110
Q ss_pred ccccCCCChhHHHHHHHHhhcCCCCCchhHHHhhhcCC
Q 041381 252 SAYEFPGMEKEVFRLLKFSYDSLSSDVLRSCLLYCSLF 289 (307)
Q Consensus 252 ~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~a~f 289 (307)
...+.-++..||+ ..+.++..++.+
T Consensus 296 ------------~~~~~~~l~~l~~-~~~~~l~aia~l 320 (412)
T 1w5s_A 296 ------------ASIQTHELEALSI-HELIILRLIAEA 320 (412)
T ss_dssp ----------------CCSSSSSCH-HHHHHHHHHHHH
T ss_pred ------------cchHHHHHHcCCH-HHHHHHHHHHHH
Confidence 1223345667887 478887777764
No 6
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.70 E-value=9.9e-08 Score=85.17 Aligned_cols=144 Identities=16% Similarity=0.098 Sum_probs=96.4
Q ss_pred CCceeeccccHHHHHHHHhcCCceEEEEEcCchh----------------------HH-------------HHHH-----
Q 041381 84 QPTIIGLESTFDKVWRCLVEGQFGIIGLYGMGGK----------------------AS-------------GIFN----- 123 (307)
Q Consensus 84 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGi----------------------~~-------------~l~~----- 123 (307)
+..|+||+.+++.|.+++..+ +++.|+|++|+ .. .+.+
T Consensus 11 ~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 88 (350)
T 2qen_A 11 REDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHITREELIKELQSTISPF 88 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSH
T ss_pred hHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeecccccccCCCHHHHHHHHHHHHHHH
Confidence 457999999999999988765 78999999998 10 0001
Q ss_pred ------------------------------Hhc-----CCeEEEEEeCcCCHHH---------HhhcCCCCCCCCCCCeE
Q 041381 124 ------------------------------LLS-----KMKFLLLLDDIWERID---------LAKVGVPFPASSRNASK 159 (307)
Q Consensus 124 ------------------------------~l~-----~kr~LlVlDdv~~~~~---------~~~l~~~~~~~~~~gs~ 159 (307)
.+. .++.+||+||++.... +..+... . ....+.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~-~-~~~~~~~ 166 (350)
T 2qen_A 89 QKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYA-Y-DSLPNLK 166 (350)
T ss_dssp HHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHH-H-HHCTTEE
T ss_pred HhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHH-H-HhcCCeE
Confidence 010 1389999999976332 2222111 1 1124788
Q ss_pred EEEecCChhh-hhc----------ccc-cceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChHHHH
Q 041381 160 IVFTTRLVDV-CGL----------MEA-QKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALI 227 (307)
Q Consensus 160 IivTtr~~~v-~~~----------~~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~ 227 (307)
+|+|++.... ... .+. ...+.+.+|+.+|+.+++...+...... --.+.+..|...|+|.|+++.
T Consensus 167 ~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~---~~~~~~~~i~~~tgG~P~~l~ 243 (350)
T 2qen_A 167 IILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD---VPENEIEEAVELLDGIPGWLV 243 (350)
T ss_dssp EEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC---CCHHHHHHHHHHHTTCHHHHH
T ss_pred EEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHhCCCHHHHH
Confidence 9999887643 111 111 2478999999999999998865432211 124577899999999999999
Q ss_pred HHHHHHc
Q 041381 228 TTSRAMS 234 (307)
Q Consensus 228 ~ig~~L~ 234 (307)
.++..+.
T Consensus 244 ~~~~~~~ 250 (350)
T 2qen_A 244 VFGVEYL 250 (350)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9987653
No 7
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.68 E-value=2.4e-08 Score=89.33 Aligned_cols=109 Identities=14% Similarity=0.162 Sum_probs=68.4
Q ss_pred CeEEEEEeCcCCHH-----HHhhcCCCCCCCCCCCeEEEEecCChhhhh-c---------c-cc-cceeecCCCCHHhHH
Q 041381 128 MKFLLLLDDIWERI-----DLAKVGVPFPASSRNASKIVFTTRLVDVCG-L---------M-EA-QKTFKVECFADQDAW 190 (307)
Q Consensus 128 kr~LlVlDdv~~~~-----~~~~l~~~~~~~~~~gs~IivTtr~~~v~~-~---------~-~~-~~~~~l~~L~~~e~~ 190 (307)
++.+||+||++... ++..+... +.....+..+|+|++...... . . +. ...+.+.+|+.+|+.
T Consensus 137 ~~~vlvlDe~~~~~~~~~~~~~~~l~~-~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~ 215 (357)
T 2fna_A 137 DNVIIVLDEAQELVKLRGVNLLPALAY-AYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAI 215 (357)
T ss_dssp SCEEEEEETGGGGGGCTTCCCHHHHHH-HHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHH
T ss_pred CCeEEEEECHHHhhccCchhHHHHHHH-HHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHH
Confidence 37899999997632 22111111 111124678999999765321 1 1 11 257899999999999
Q ss_pred HHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChHHHHHHHHHHcCCCChhHH
Q 041381 191 ELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALITTSRAMSSKKRPEER 242 (307)
Q Consensus 191 ~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ig~~L~~~~~~~~w 242 (307)
+++...+..... ..... ..|+..|+|.|+++..++..+....+...|
T Consensus 216 ~~l~~~~~~~~~-~~~~~----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~ 262 (357)
T 2fna_A 216 EFLRRGFQEADI-DFKDY----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFA 262 (357)
T ss_dssp HHHHHHHHHHTC-CCCCH----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHcCC-CCCcH----HHHHHHhCCCHHHHHHHHHHHccccchHHH
Confidence 999886532111 11121 889999999999999998876532333333
No 8
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.48 E-value=9.1e-07 Score=74.18 Aligned_cols=145 Identities=14% Similarity=0.154 Sum_probs=98.6
Q ss_pred CceeeccccHHHHHHHHhcCC-ceEEEEEcCchh-----HHHH-------------------------------------
Q 041381 85 PTIIGLESTFDKVWRCLVEGQ-FGIIGLYGMGGK-----ASGI------------------------------------- 121 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGi-----~~~l------------------------------------- 121 (307)
..++||+..++.+..++..+. ...+.|+|.+|+ ++.+
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDA 102 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEET
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecC
Confidence 468999999999999988763 457899999998 1111
Q ss_pred ---------HHHh--------cCCeEEEEEeCcCC--HHHHhhcCCCCCCCCCCCeEEEEecCChhhh-h-cccccceee
Q 041381 122 ---------FNLL--------SKMKFLLLLDDIWE--RIDLAKVGVPFPASSRNASKIVFTTRLVDVC-G-LMEAQKTFK 180 (307)
Q Consensus 122 ---------~~~l--------~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~IivTtr~~~v~-~-~~~~~~~~~ 180 (307)
.+.+ .+++.+||+||++. ...+..+... +.....+..+|+||+..... . .......+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~-l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~ 181 (250)
T 1njg_A 103 ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKT-LEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 181 (250)
T ss_dssp TCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHH-HHSCCTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred cccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHH-HhcCCCceEEEEEeCChHhCCHHHHHHhhhcc
Confidence 1111 23468999999965 3444444332 32334578888888765421 1 112235789
Q ss_pred cCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChHHHHHHHHHH
Q 041381 181 VECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALITTSRAM 233 (307)
Q Consensus 181 l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ig~~L 233 (307)
+++++.++..+++...+..... .--.+....|++.|+|.|..+..+...+
T Consensus 182 l~~l~~~e~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 182 LKALDVEQIRHQLEHILNEEHI---AHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CCCCCHHHHHHHHHHHHHHTTC---CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999988753321 1124567899999999999988776543
No 9
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=98.35 E-value=9.8e-07 Score=66.14 Aligned_cols=28 Identities=7% Similarity=0.209 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 041381 2 VQGWLSRVEAVEAEVGELTRDTSQEIEK 29 (307)
Q Consensus 2 v~~Wl~~lr~~ayd~ed~ld~~~~~~~~ 29 (307)
|+.|+++||+++||+||+||+|.++...
T Consensus 57 vk~W~~~vrdlaYD~ED~iD~f~~~~~~ 84 (115)
T 3qfl_A 57 DKLWADEVRELSYVIEDVVDKFLVQVDG 84 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7899999999999999999999988764
No 10
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.19 E-value=7.1e-06 Score=67.73 Aligned_cols=142 Identities=9% Similarity=0.067 Sum_probs=93.8
Q ss_pred CceeeccccHHHHHHHHhcCCceEEEEEcCchh------------------------------------HHHHHHHh---
Q 041381 85 PTIIGLESTFDKVWRCLVEGQFGIIGLYGMGGK------------------------------------ASGIFNLL--- 125 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGi------------------------------------~~~l~~~l--- 125 (307)
.+++|++..++.+.+++.......+.|+|.+|+ ...+....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTA 96 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSC
T ss_pred HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhccc
Confidence 468999999999999998775555899999998 11122222
Q ss_pred ---cCCeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEEEecCChhhh-h-cccccceeecCCCCHHhHHHHHHHHhC
Q 041381 126 ---SKMKFLLLLDDIWER--IDLAKVGVPFPASSRNASKIVFTTRLVDVC-G-LMEAQKTFKVECFADQDAWELFLKKVG 198 (307)
Q Consensus 126 ---~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IivTtr~~~v~-~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 198 (307)
.+++.+||+||++.. .....+... +.....++.+|+||+..... . .......+.+.+++.++..+++.+.+.
T Consensus 97 ~~~~~~~~vliiDe~~~l~~~~~~~l~~~-l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~ 175 (226)
T 2chg_A 97 PIGGAPFKIIFLDEADALTADAQAALRRT-MEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICE 175 (226)
T ss_dssp CSTTCSCEEEEEETGGGSCHHHHHHHHHH-HHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred CCCccCceEEEEeChhhcCHHHHHHHHHH-HHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHH
Confidence 256789999999753 223333222 22234567888888765321 1 112234789999999999999998774
Q ss_pred CCCCCCCCChHHHHHHHHHHCCCChHHHHHHH
Q 041381 199 QETLESHPDIPELAQTVAKECSGLPLALITTS 230 (307)
Q Consensus 199 ~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ig 230 (307)
..... --.+....|++.++|.|..+..+.
T Consensus 176 ~~~~~---~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 176 KEGVK---ITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp HHTCC---BCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 32211 124567788899999999655443
No 11
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.03 E-value=1.9e-05 Score=69.51 Aligned_cols=143 Identities=12% Similarity=0.144 Sum_probs=93.8
Q ss_pred CceeeccccHHHHHHHHhcCCceEEEEEcCchh--------------------------------HHHH----HHHh---
Q 041381 85 PTIIGLESTFDKVWRCLVEGQFGIIGLYGMGGK--------------------------------ASGI----FNLL--- 125 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGi--------------------------------~~~l----~~~l--- 125 (307)
.+++|++..++.+.+++..+..+.+.++|++|+ ...+ ....
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 100 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKK 100 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHHHHBC
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHHHHHHHHhcc
Confidence 468999999999999998776555899999998 1111 1111
Q ss_pred ----cCCeEEEEEeCcCC--HHHHhhcCCCCCCCCCCCeEEEEecCChh-hhhc-ccccceeecCCCCHHhHHHHHHHHh
Q 041381 126 ----SKMKFLLLLDDIWE--RIDLAKVGVPFPASSRNASKIVFTTRLVD-VCGL-MEAQKTFKVECFADQDAWELFLKKV 197 (307)
Q Consensus 126 ----~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~IivTtr~~~-v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~ 197 (307)
.+++.++|+||++. ...+..+... +.....++.+|+||.... +... ......+.+.+++.++..+++...+
T Consensus 101 ~~~~~~~~~viiiDe~~~l~~~~~~~L~~~-le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~ 179 (323)
T 1sxj_B 101 LHLPPGKHKIVILDEADSMTAGAQQALRRT-MELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQII 179 (323)
T ss_dssp CCCCTTCCEEEEEESGGGSCHHHHHTTHHH-HHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred ccCCCCCceEEEEECcccCCHHHHHHHHHH-HhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHH
Confidence 34588999999975 2333333222 222345678888876643 2111 1223478999999999999998876
Q ss_pred CCCCCCCCCChHHHHHHHHHHCCCChHH-HHHHHH
Q 041381 198 GQETLESHPDIPELAQTVAKECSGLPLA-LITTSR 231 (307)
Q Consensus 198 ~~~~~~~~~~l~~~~~~i~~~c~GlPLa-i~~ig~ 231 (307)
...+.. --.+....|++.|+|.|.. +..+..
T Consensus 180 ~~~~~~---~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 180 KLEDVK---YTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp HHHTCC---BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 432211 1245678899999999954 444433
No 12
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.03 E-value=3e-05 Score=69.75 Aligned_cols=143 Identities=13% Similarity=0.148 Sum_probs=87.0
Q ss_pred CCceeeccccHHHHHHHHhc----CCceEEEEEcCchh---------HHHH-----------------------------
Q 041381 84 QPTIIGLESTFDKVWRCLVE----GQFGIIGLYGMGGK---------ASGI----------------------------- 121 (307)
Q Consensus 84 ~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGi---------~~~l----------------------------- 121 (307)
+..++||+.+++.+.+++.. .....+.|+|++|+ .+.+
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 46799999999999998874 34668889999998 1111
Q ss_pred ---------------------HHHhc--CCeEEEEEeCcCCHH------HHhhcCCCCCCC-CCCCeEEEEecCChhhhh
Q 041381 122 ---------------------FNLLS--KMKFLLLLDDIWERI------DLAKVGVPFPAS-SRNASKIVFTTRLVDVCG 171 (307)
Q Consensus 122 ---------------------~~~l~--~kr~LlVlDdv~~~~------~~~~l~~~~~~~-~~~gs~IivTtr~~~v~~ 171 (307)
.+.+. +++.+||+|+++... .+..+... +.. ...+..+|+||+......
T Consensus 99 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~-~~~~~~~~~~~I~~~~~~~~~~ 177 (386)
T 2qby_A 99 ESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRI-NSEVNKSKISFIGITNDVKFVD 177 (386)
T ss_dssp TTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHH-HHSCCC--EEEEEEESCGGGGG
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhc-hhhcCCCeEEEEEEECCCChHh
Confidence 01111 347899999997532 22222111 100 234567788887764432
Q ss_pred ccc-------ccceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCC---CChHHHHH
Q 041381 172 LME-------AQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECS---GLPLALIT 228 (307)
Q Consensus 172 ~~~-------~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~---GlPLai~~ 228 (307)
.+. ....+.+++++.++..+++...+.... ....-..+....+++.++ |.|..+..
T Consensus 178 ~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ 243 (386)
T 2qby_A 178 LLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF-KPGVLPDNVIKLCAALAAREHGDARRALD 243 (386)
T ss_dssp GCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB-CSSCSCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred hhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHhcCCHHHHHH
Confidence 221 114789999999999999998653111 011223455667777777 99884433
No 13
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.99 E-value=7.7e-05 Score=67.12 Aligned_cols=186 Identities=15% Similarity=0.100 Sum_probs=105.1
Q ss_pred CCceeeccccHHHHHHHHhc----CCceEEEEEcCchh---------HH-------------------------------
Q 041381 84 QPTIIGLESTFDKVWRCLVE----GQFGIIGLYGMGGK---------AS------------------------------- 119 (307)
Q Consensus 84 ~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGi---------~~------------------------------- 119 (307)
+..++||+.+++.+.+++.. .....+.|+|++|+ .+
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 36789999999999998843 35668889999998 00
Q ss_pred ----------------------HHHHHh--cCCeEEEEEeCcCCHHH-------HhhcCCCCCCC-C-CCCeEEEEecCC
Q 041381 120 ----------------------GIFNLL--SKMKFLLLLDDIWERID-------LAKVGVPFPAS-S-RNASKIVFTTRL 166 (307)
Q Consensus 120 ----------------------~l~~~l--~~kr~LlVlDdv~~~~~-------~~~l~~~~~~~-~-~~gs~IivTtr~ 166 (307)
.+.+.+ .+++.+||+|+++.... +..+... ... . ..+..+|.||+.
T Consensus 98 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~-~~~~~~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 98 AIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRI-NQELGDRVWVSLVGITNS 176 (387)
T ss_dssp HHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHG-GGCC-----CEEEEECSC
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhc-hhhcCCCceEEEEEEECC
Confidence 111122 24578999999976421 2222111 111 0 345677777776
Q ss_pred hhhhhcc-----c-cc-ceeecCCCCHHhHHHHHHHHhCC--CCCCCCCChHHHHHHHHHHCC---CChH-HHHHHHHHH
Q 041381 167 VDVCGLM-----E-AQ-KTFKVECFADQDAWELFLKKVGQ--ETLESHPDIPELAQTVAKECS---GLPL-ALITTSRAM 233 (307)
Q Consensus 167 ~~v~~~~-----~-~~-~~~~l~~L~~~e~~~Lf~~~~~~--~~~~~~~~l~~~~~~i~~~c~---GlPL-ai~~ig~~L 233 (307)
......+ . .. ..+.+++++.++..+++...+.. .....+++ ....+++.++ |.|- ++.++....
T Consensus 177 ~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~G~~r~~~~~l~~a~ 253 (387)
T 2v1u_A 177 LGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPD---VVPLCAALAAREHGDARRALDLLRVAG 253 (387)
T ss_dssp STTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSS---HHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHH---HHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 5322111 1 11 47899999999999999987532 11122333 4556666666 9994 333333222
Q ss_pred c-----C--CCChhHHHHHHHHHhhccccCCCChhHHHHHHHHhhcCCCCCchhHHHhhhc
Q 041381 234 S-----S--KKRPEERSYAIQMLRRSAYEFPGMEKEVFRLLKFSYDSLSSDVLRSCLLYCS 287 (307)
Q Consensus 234 ~-----~--~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~a 287 (307)
. + .-+.+.+..+++.... ..+.-++..|+++ .+..++..+
T Consensus 254 ~~a~~~~~~~i~~~~v~~a~~~~~~-------------~~~~~~~~~l~~~-~~~~l~a~~ 300 (387)
T 2v1u_A 254 EIAERRREERVRREHVYSARAEIER-------------DRVSEVVRTLPLH-AKLVLLSIM 300 (387)
T ss_dssp HHHHHTTCSCBCHHHHHHHHHHHHH-------------HHHHHHHHSSCHH-HHHHHHHHH
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHhh-------------chHHHHHHcCCHH-HHHHHHHHH
Confidence 1 1 1356666665554321 1344466777773 555544444
No 14
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.74 E-value=0.001 Score=59.84 Aligned_cols=182 Identities=14% Similarity=0.023 Sum_probs=109.4
Q ss_pred CceeeccccHHHHHHHHhc----CCceEEEEEcCchh---------HHHH------------------------------
Q 041381 85 PTIIGLESTFDKVWRCLVE----GQFGIIGLYGMGGK---------ASGI------------------------------ 121 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGi---------~~~l------------------------------ 121 (307)
..++||+++++++.++|.. ...+.+.|+|++|+ .+.+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 6789999999999887764 24668999999998 1111
Q ss_pred ---------------------------HHHhcCCeEEEEEeCcCCHHH-------HhhcCCCCCCCCCCCeEEEEecCCh
Q 041381 122 ---------------------------FNLLSKMKFLLLLDDIWERID-------LAKVGVPFPASSRNASKIVFTTRLV 167 (307)
Q Consensus 122 ---------------------------~~~l~~kr~LlVlDdv~~~~~-------~~~l~~~~~~~~~~gs~IivTtr~~ 167 (307)
.+.+..++.+||+||++.... +..+... . .+..+|+||+..
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~-~----~~~~iI~~t~~~ 174 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRS-D----ANISVIMISNDI 174 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTS-S----SCEEEEEECSST
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcC-C----cceEEEEEECCC
Confidence 001223345999999976432 2233222 1 678899999875
Q ss_pred hhhhcc------cccceeecCCCCHHhHHHHHHHHhCC--CCCCCCCChHHHHHHHHHHCC---CChH-HHHHHHHHH--
Q 041381 168 DVCGLM------EAQKTFKVECFADQDAWELFLKKVGQ--ETLESHPDIPELAQTVAKECS---GLPL-ALITTSRAM-- 233 (307)
Q Consensus 168 ~v~~~~------~~~~~~~l~~L~~~e~~~Lf~~~~~~--~~~~~~~~l~~~~~~i~~~c~---GlPL-ai~~ig~~L-- 233 (307)
.....+ .....+.+++++.++..++|...+.. .....+ .+..+.|++.|+ |.|. |+..+-...
T Consensus 175 ~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~ 251 (384)
T 2qby_B 175 NVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQL 251 (384)
T ss_dssp TTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred chHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 321111 11238899999999999999987631 111122 245567777777 8877 444433322
Q ss_pred c---CCCChhHHHHHHHHHhhccccCCCChhHHHHHHHHhhcCCCCCchhHHHhhhcC
Q 041381 234 S---SKKRPEERSYAIQMLRRSAYEFPGMEKEVFRLLKFSYDSLSSDVLRSCLLYCSL 288 (307)
Q Consensus 234 ~---~~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~a~ 288 (307)
. ..-+.+.+..+++.... ..+.-++..|++ ..+..+..++.
T Consensus 252 a~~~~~i~~~~v~~~~~~~~~-------------~~~~~~~~~l~~-~~~~~l~al~~ 295 (384)
T 2qby_B 252 ASGGGIIRKEHVDKAIVDYEQ-------------ERLIEAVKALPF-HYKLALRSLIE 295 (384)
T ss_dssp TTSSSCCCHHHHHHHHHHHHH-------------HHHHHHHHSSCH-HHHHHHHHHHT
T ss_pred hcCCCccCHHHHHHHHHHHhc-------------chHHHHHHcCCH-HHHHHHHHHHH
Confidence 2 12466777776654421 234455666766 35555554554
No 15
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.61 E-value=0.00027 Score=62.07 Aligned_cols=145 Identities=13% Similarity=0.076 Sum_probs=95.3
Q ss_pred CceeeccccHHHHHHHHhcCCceEEEEEcCchh------------------------------------HHHHHHHh---
Q 041381 85 PTIIGLESTFDKVWRCLVEGQFGIIGLYGMGGK------------------------------------ASGIFNLL--- 125 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGi------------------------------------~~~l~~~l--- 125 (307)
.+++|++..++.+.+++..+..+.+.++|.+|+ ...+.+..
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTK 104 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHHHHHHSC
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHHHHHHhhC
Confidence 458999999999999988876656999999998 01122211
Q ss_pred --c-CCeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEEEecCChhh-hhcc-cccceeecCCCCHHhHHHHHHHHhC
Q 041381 126 --S-KMKFLLLLDDIWER--IDLAKVGVPFPASSRNASKIVFTTRLVDV-CGLM-EAQKTFKVECFADQDAWELFLKKVG 198 (307)
Q Consensus 126 --~-~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IivTtr~~~v-~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~ 198 (307)
. +++.++|+|+++.. .....+... +.....++++|+||....- ...+ .....+.+.+++.++...++...+.
T Consensus 105 ~~~~~~~~vliiDe~~~l~~~~~~~L~~~-le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~ 183 (327)
T 1iqp_A 105 PIGGASFKIIFLDEADALTQDAQQALRRT-MEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAE 183 (327)
T ss_dssp CGGGCSCEEEEEETGGGSCHHHHHHHHHH-HHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred CcCCCCCeEEEEeCCCcCCHHHHHHHHHH-HHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHH
Confidence 1 46789999999753 333333222 2222456788888866432 1111 1234789999999999999988775
Q ss_pred CCCCCCCCChHHHHHHHHHHCCCChHHHHHHHHHH
Q 041381 199 QETLESHPDIPELAQTVAKECSGLPLALITTSRAM 233 (307)
Q Consensus 199 ~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ig~~L 233 (307)
..+.. --.+....|++.++|.|..+..+...+
T Consensus 184 ~~~~~---~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 184 NEGLE---LTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp TTTCE---ECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcCCC---CCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 43311 124567889999999998765554433
No 16
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.45 E-value=0.0013 Score=57.39 Aligned_cols=142 Identities=10% Similarity=0.074 Sum_probs=93.8
Q ss_pred CceeeccccHHHHHHHHhcCCceEEEEEcCchh---------H---------------------------HHHHHHh---
Q 041381 85 PTIIGLESTFDKVWRCLVEGQFGIIGLYGMGGK---------A---------------------------SGIFNLL--- 125 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGi---------~---------------------------~~l~~~l--- 125 (307)
.+++|++..++.+.+++..+..+.+.++|..|+ . +.+....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTA 96 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHHHHHHSC
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHHHHHhcC
Confidence 458999999999998887775555899999998 1 1111211
Q ss_pred ---cCCeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEEEecCChh-hhhc-ccccceeecCCCCHHhHHHHHHHHhC
Q 041381 126 ---SKMKFLLLLDDIWER--IDLAKVGVPFPASSRNASKIVFTTRLVD-VCGL-MEAQKTFKVECFADQDAWELFLKKVG 198 (307)
Q Consensus 126 ---~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IivTtr~~~-v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~ 198 (307)
.+++.++|+|++... .....+... +.....++.+|+||.... +... ......+.+.+++.++...++...+.
T Consensus 97 ~~~~~~~~vliiDe~~~l~~~~~~~L~~~-le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~ 175 (319)
T 2chq_A 97 PIGGAPFKIIFLDEADALTADAQAALRRT-MEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICE 175 (319)
T ss_dssp CSSSCCCEEEEEETGGGSCHHHHHTTGGG-TSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCceEEEEeCCCcCCHHHHHHHHHH-HHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHH
Confidence 145789999999753 334444433 433445678888876543 2111 12234789999999999999988775
Q ss_pred CCCCCCCCChHHHHHHHHHHCCCChHHHHHHH
Q 041381 199 QETLESHPDIPELAQTVAKECSGLPLALITTS 230 (307)
Q Consensus 199 ~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ig 230 (307)
..+.. --.+....|++.++|.+-.+....
T Consensus 176 ~~~~~---i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 176 KEGVK---ITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp TTCCC---BCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 43311 124567888899999988655443
No 17
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.40 E-value=0.00087 Score=60.28 Aligned_cols=144 Identities=13% Similarity=0.121 Sum_probs=89.0
Q ss_pred CCceeeccccHHHHHHHHhc----CCce--EEEEEcCchh-----------------------------------HHH--
Q 041381 84 QPTIIGLESTFDKVWRCLVE----GQFG--IIGLYGMGGK-----------------------------------ASG-- 120 (307)
Q Consensus 84 ~~~~vGr~~~~~~l~~~L~~----~~~~--vi~I~G~gGi-----------------------------------~~~-- 120 (307)
+..++||+.+++.+.+++.. .... .+.|+|..|+ ...
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHH
Confidence 36789999999999998875 2233 8999999998 001
Q ss_pred --------------------HHHHh--cCCeEEEEEeCcCCH--HHHhhcCCCCCCC-CC---CCeEEEEecCChhhhhc
Q 041381 121 --------------------IFNLL--SKMKFLLLLDDIWER--IDLAKVGVPFPAS-SR---NASKIVFTTRLVDVCGL 172 (307)
Q Consensus 121 --------------------l~~~l--~~kr~LlVlDdv~~~--~~~~~l~~~~~~~-~~---~gs~IivTtr~~~v~~~ 172 (307)
+.+.+ .+++.+||+|+++.. .....+... +.. .. .+..+|++|+.......
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~-~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRL-GQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHH-TTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHH-HHhCCCCCcCCEEEEEEECCchHHHH
Confidence 11111 135789999999763 333333222 211 11 46778888877643322
Q ss_pred cc-------ccceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHC---------CCChHHHHHH
Q 041381 173 ME-------AQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKEC---------SGLPLALITT 229 (307)
Q Consensus 173 ~~-------~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c---------~GlPLai~~i 229 (307)
+. ....+.+.+++.++..+++...+.... ....--.+....|++.+ +|.|-.+..+
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~ 246 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGL-AEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDI 246 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHB-CTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHH
Confidence 21 123689999999999999988764211 01122346678888888 7887544433
No 18
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.30 E-value=0.0019 Score=57.71 Aligned_cols=142 Identities=13% Similarity=0.145 Sum_probs=91.2
Q ss_pred CceeeccccHHHHHHHHhcCC-ceEEEEEcCchh-----HHHH-------------------------------------
Q 041381 85 PTIIGLESTFDKVWRCLVEGQ-FGIIGLYGMGGK-----ASGI------------------------------------- 121 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGi-----~~~l------------------------------------- 121 (307)
.+++|++..++.+.+.+..+. ...+.|+|..|+ ++.+
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDA 95 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEET
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecc
Confidence 458999999999999988764 457889999998 1111
Q ss_pred ------------HHHh-----cCCeEEEEEeCcCC--HHHHhhcCCCCCCCCCCCeEEEEecCChh-hhhc-ccccceee
Q 041381 122 ------------FNLL-----SKMKFLLLLDDIWE--RIDLAKVGVPFPASSRNASKIVFTTRLVD-VCGL-MEAQKTFK 180 (307)
Q Consensus 122 ------------~~~l-----~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~IivTtr~~~-v~~~-~~~~~~~~ 180 (307)
.+.+ .+++.++|+||+.. ......+... +.....+..+|++|.... +... ......+.
T Consensus 96 ~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~-le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~ 174 (373)
T 1jr3_A 96 ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKT-LEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 (373)
T ss_dssp TCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHH-HHSCCSSEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred cccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHH-HhcCCCceEEEEEeCChHhCcHHHHhheeEee
Confidence 1111 13467899999965 2333333222 222234567777765443 2111 12345789
Q ss_pred cCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChHHHHHHH
Q 041381 181 VECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALITTS 230 (307)
Q Consensus 181 l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ig 230 (307)
+.+++.++..+++...+...+.. --.+....|++.++|.|..+..+.
T Consensus 175 ~~~l~~~~~~~~l~~~~~~~~~~---~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 175 LKALDVEQIRHQLEHILNEEHIA---HEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCC---BCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 99999999999998776332211 124567889999999999877654
No 19
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.26 E-value=0.0073 Score=52.85 Aligned_cols=146 Identities=12% Similarity=0.087 Sum_probs=90.8
Q ss_pred CceeeccccHHHHHHHHhc-----CCceEEEEEcCchh---------------------------HHHHHHHhcC---Ce
Q 041381 85 PTIIGLESTFDKVWRCLVE-----GQFGIIGLYGMGGK---------------------------ASGIFNLLSK---MK 129 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGi---------------------------~~~l~~~l~~---kr 129 (307)
.+++|++..++.+..++.. .....+.|+|..|+ ...+...+.+ +.
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 91 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEG 91 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSHHHHHHHHTTTCCTT
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCChHHHHHHHHHhccCC
Confidence 4689999999888887752 23456789999998 2334444433 56
Q ss_pred EEEEEeCcCCHH--HHhhcCCC-------CCCC----------CCCCeEEEEecCChh-hhhcc--cccceeecCCCCHH
Q 041381 130 FLLLLDDIWERI--DLAKVGVP-------FPAS----------SRNASKIVFTTRLVD-VCGLM--EAQKTFKVECFADQ 187 (307)
Q Consensus 130 ~LlVlDdv~~~~--~~~~l~~~-------~~~~----------~~~gs~IivTtr~~~-v~~~~--~~~~~~~l~~L~~~ 187 (307)
.+|++|++.... ....+... .... ...+..+|.||.... +...+ .....+.+.+++.+
T Consensus 92 ~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~ 171 (324)
T 1hqc_A 92 DILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPE 171 (324)
T ss_dssp CEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHH
T ss_pred CEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHH
Confidence 799999997632 11111100 0000 012345666665432 21111 11347899999999
Q ss_pred hHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChHHHHHHHHHH
Q 041381 188 DAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALITTSRAM 233 (307)
Q Consensus 188 e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ig~~L 233 (307)
+..+++...+...... --.+....|++.|+|.|-.+..+...+
T Consensus 172 e~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 172 ELAQGVMRDARLLGVR---ITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp HHHHHHHHHHHTTTCC---CCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCC---CCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 9999998887543311 224677889999999998887766544
No 20
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.46 E-value=0.088 Score=44.77 Aligned_cols=158 Identities=16% Similarity=0.070 Sum_probs=88.1
Q ss_pred CceeeccccHHHHHHH-------Hh---cCCceEEEEEcCchh----------------------------------HHH
Q 041381 85 PTIIGLESTFDKVWRC-------LV---EGQFGIIGLYGMGGK----------------------------------ASG 120 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~-------L~---~~~~~vi~I~G~gGi----------------------------------~~~ 120 (307)
..++|.+..++++... +. ......+.|+|..|+ ...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~ 112 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQA 112 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHH
Confidence 4578888777766663 32 224667889999998 122
Q ss_pred HHHHh----cCCeEEEEEeCcCCH---------------HHHhhcCCCCCCCCCCCeEEEEecCChhhhhc---ccc-cc
Q 041381 121 IFNLL----SKMKFLLLLDDIWER---------------IDLAKVGVPFPASSRNASKIVFTTRLVDVCGL---MEA-QK 177 (307)
Q Consensus 121 l~~~l----~~kr~LlVlDdv~~~---------------~~~~~l~~~~~~~~~~gs~IivTtr~~~v~~~---~~~-~~ 177 (307)
++..+ ..+..+|++|++... ..+..+... .........||.||........ .+. ..
T Consensus 113 ~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~-~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~ 191 (272)
T 1d2n_A 113 MKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKK-APPQGRKLLIIGTTSRKDVLQEMEMLNAFST 191 (272)
T ss_dssp HHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTC-CCSTTCEEEEEEEESCHHHHHHTTCTTTSSE
T ss_pred HHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcC-ccCCCCCEEEEEecCChhhcchhhhhcccce
Confidence 22222 346789999998542 112222222 2223334557777777644322 111 35
Q ss_pred eeecCCCCH-HhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCC------ChHHHHHHHHHHcCCCChhHHHHHHHHHh
Q 041381 178 TFKVECFAD-QDAWELFLKKVGQETLESHPDIPELAQTVAKECSG------LPLALITTSRAMSSKKRPEERSYAIQMLR 250 (307)
Q Consensus 178 ~~~l~~L~~-~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~G------lPLai~~ig~~L~~~~~~~~w~~~l~~l~ 250 (307)
.+.+.+++. ++-..++.+... . -.+....|++.+.| +.-++.++-.. ....+...+..++..+.
T Consensus 192 ~i~~p~l~~r~~i~~i~~~~~~-----~---~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a-~~~~~~~~~~~~~~~l~ 262 (272)
T 1d2n_A 192 TIHVPNIATGEQLLEALELLGN-----F---KDKERTTIAQQVKGKKVWIGIKKLLMLIEMS-LQMDPEYRVRKFLALLR 262 (272)
T ss_dssp EEECCCEEEHHHHHHHHHHHTC-----S---CHHHHHHHHHHHTTSEEEECHHHHHHHHHHH-TTSCGGGHHHHHHHHHH
T ss_pred EEcCCCccHHHHHHHHHHhcCC-----C---CHHHHHHHHHHhcCCCccccHHHHHHHHHHH-hhhchHHHHHHHHHHHH
Confidence 678888888 565566554321 1 13456778888877 34444433333 22245566777666665
Q ss_pred hc
Q 041381 251 RS 252 (307)
Q Consensus 251 ~~ 252 (307)
..
T Consensus 263 ~~ 264 (272)
T 1d2n_A 263 EE 264 (272)
T ss_dssp HT
T ss_pred Hc
Confidence 54
No 21
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.36 E-value=0.015 Score=49.92 Aligned_cols=139 Identities=19% Similarity=0.180 Sum_probs=83.6
Q ss_pred CceeeccccHHHHHHHHhc-------------CCceEEEEEcCchh---------------------------------H
Q 041381 85 PTIIGLESTFDKVWRCLVE-------------GQFGIIGLYGMGGK---------------------------------A 118 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGi---------------------------------~ 118 (307)
.+++|.++.++.|.+.+.. ....-+.|+|.+|+ .
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~ 96 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGA 96 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHH
Confidence 4689999999999887742 23456889999999 1
Q ss_pred HHH----HHHhcCCeEEEEEeCcCCH----------------HHHhhcCCCCC--CCCCCCeEEEEecCChhhhhc--c-
Q 041381 119 SGI----FNLLSKMKFLLLLDDIWER----------------IDLAKVGVPFP--ASSRNASKIVFTTRLVDVCGL--M- 173 (307)
Q Consensus 119 ~~l----~~~l~~kr~LlVlDdv~~~----------------~~~~~l~~~~~--~~~~~gs~IivTtr~~~v~~~--~- 173 (307)
..+ ......+..+|++|++... ..+..+... + .....+..||.||........ .
T Consensus 97 ~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~~~~~vI~ttn~~~~l~~~l~~ 175 (285)
T 3h4m_A 97 SLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAE-MDGFDARGDVKIIGATNRPDILDPAILR 175 (285)
T ss_dssp HHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHH-HHTTCSSSSEEEEEECSCGGGBCHHHHS
T ss_pred HHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHH-hhCCCCCCCEEEEEeCCCchhcCHHHcC
Confidence 111 2222345589999999642 111111111 0 012346778888876533220 1
Q ss_pred --cccceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCC-ChHHHHH
Q 041381 174 --EAQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSG-LPLALIT 228 (307)
Q Consensus 174 --~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~G-lPLai~~ 228 (307)
.....+.+.+.+.++..+++...+.......... ...++..+.| .|-.+..
T Consensus 176 ~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 176 PGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp TTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHHHH
T ss_pred CCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHHHH
Confidence 1234688999999999999998876544222223 3566777777 4534443
No 22
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.24 E-value=0.03 Score=52.69 Aligned_cols=139 Identities=9% Similarity=0.113 Sum_probs=83.9
Q ss_pred CceeeccccHHHHHHHHhcC-----------------CceEEEEEcCchh---------------------------HHH
Q 041381 85 PTIIGLESTFDKVWRCLVEG-----------------QFGIIGLYGMGGK---------------------------ASG 120 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~~~-----------------~~~vi~I~G~gGi---------------------------~~~ 120 (307)
.+++|++..++++.+++... ..+.+.|+|..|+ ...
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~ 118 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTL 118 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHH
Confidence 46899999999999998751 2468999999999 111
Q ss_pred HHHHh----------------------cCCeEEEEEeCcCCHH-----HHhhcCCCCCCCCCCCeEEEEecCChh---hh
Q 041381 121 IFNLL----------------------SKMKFLLLLDDIWERI-----DLAKVGVPFPASSRNASKIVFTTRLVD---VC 170 (307)
Q Consensus 121 l~~~l----------------------~~kr~LlVlDdv~~~~-----~~~~l~~~~~~~~~~gs~IivTtr~~~---v~ 170 (307)
+...+ .+++.+|++|++.... .+..+... +.. .+..||+++.+.. +.
T Consensus 119 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~-l~~--~~~~iIli~~~~~~~~l~ 195 (516)
T 1sxj_A 119 LNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQF-CRK--TSTPLILICNERNLPKMR 195 (516)
T ss_dssp HHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHH-HHH--CSSCEEEEESCTTSSTTG
T ss_pred HHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHH-HHh--cCCCEEEEEcCCCCccch
Confidence 22111 1457899999996421 11222111 111 1233555544322 22
Q ss_pred hcccccceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCC-ChHHHHHH
Q 041381 171 GLMEAQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSG-LPLALITT 229 (307)
Q Consensus 171 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~G-lPLai~~i 229 (307)
........+.+.+++.++..+.+...+.......++ +....|++.++| ++-++..+
T Consensus 196 ~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 196 PFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp GGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHH
T ss_pred hhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHH
Confidence 222234578999999999999998876543322232 346788899998 45555554
No 23
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.01 E-value=0.032 Score=49.20 Aligned_cols=141 Identities=11% Similarity=0.104 Sum_probs=87.7
Q ss_pred CceeeccccHHHHHHHHhcCCceEEEEEcCchh---------HHH----------------------------HHHHh--
Q 041381 85 PTIIGLESTFDKVWRCLVEGQFGIIGLYGMGGK---------ASG----------------------------IFNLL-- 125 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGi---------~~~----------------------------l~~~l-- 125 (307)
.+++|+++.++.+..++..+....+.++|..|+ .+. +....
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARL 116 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHHHHS
T ss_pred HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHHHHhhh
Confidence 468999999999999988775445889999998 111 11110
Q ss_pred --------------cCCeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEEEecCChh-hhhcc-cccceeecCCCCHH
Q 041381 126 --------------SKMKFLLLLDDIWER--IDLAKVGVPFPASSRNASKIVFTTRLVD-VCGLM-EAQKTFKVECFADQ 187 (307)
Q Consensus 126 --------------~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IivTtr~~~-v~~~~-~~~~~~~l~~L~~~ 187 (307)
.++.-+|++|++... .....+... +.......++|++|.... +...+ .....+.+.+++.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~-le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~ 195 (353)
T 1sxj_D 117 TVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRT-METYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDAS 195 (353)
T ss_dssp CCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHH-HHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHH
T ss_pred cccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHH-HHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHH
Confidence 123458999998642 222222211 111223466777665432 22211 12347889999999
Q ss_pred hHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChHHHHHH
Q 041381 188 DAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALITT 229 (307)
Q Consensus 188 e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~i 229 (307)
+....+...+...... --.+....|++.++|.|-.+..+
T Consensus 196 ~~~~~l~~~~~~~~~~---i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 196 NAIDRLRFISEQENVK---CDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp HHHHHHHHHHHTTTCC---CCHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 9999998877543311 12467789999999999875544
No 24
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.78 E-value=0.0037 Score=49.72 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=28.6
Q ss_pred CceeeccccHHHHHHHHhcCCceEEEEEcCchh
Q 041381 85 PTIIGLESTFDKVWRCLVEGQFGIIGLYGMGGK 117 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGi 117 (307)
..++||++.++.+.+.+.......+.|+|.+|+
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~ 54 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGV 54 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTS
T ss_pred cccccchHHHHHHHHHHhcCCCCceEEECCCCC
Confidence 458999999999999998776677889999998
No 25
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.70 E-value=0.024 Score=46.86 Aligned_cols=142 Identities=8% Similarity=0.018 Sum_probs=78.8
Q ss_pred Cceeecc---ccHHHHHHHHhcCCceEEEEEcCchh-----HHHHHHHhc-------------------------CCeEE
Q 041381 85 PTIIGLE---STFDKVWRCLVEGQFGIIGLYGMGGK-----ASGIFNLLS-------------------------KMKFL 131 (307)
Q Consensus 85 ~~~vGr~---~~~~~l~~~L~~~~~~vi~I~G~gGi-----~~~l~~~l~-------------------------~kr~L 131 (307)
.+++|.+ ..++.+..++.......+.|+|..|+ ++.+.+.+. .+..+
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 107 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTALLEGLEQFDL 107 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGGGGTTGGGSSE
T ss_pred hhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHHhccCCCE
Confidence 3467633 34455555554445678889999998 222222111 23568
Q ss_pred EEEeCcCCHH--H--HhhcCCCCCCC-CCCC-eEEEEecCChh---------hhhcccccceeecCCCCHHhHHHHHHHH
Q 041381 132 LLLDDIWERI--D--LAKVGVPFPAS-SRNA-SKIVFTTRLVD---------VCGLMEAQKTFKVECFADQDAWELFLKK 196 (307)
Q Consensus 132 lVlDdv~~~~--~--~~~l~~~~~~~-~~~g-s~IivTtr~~~---------v~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 196 (307)
||+||++... . ...+... +.. ...+ .++|+||+... +...+.....+.+.+++.++..+++...
T Consensus 108 liiDe~~~~~~~~~~~~~l~~~-l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~ 186 (242)
T 3bos_A 108 ICIDDVDAVAGHPLWEEAIFDL-YNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRR 186 (242)
T ss_dssp EEEETGGGGTTCHHHHHHHHHH-HHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHH
T ss_pred EEEeccccccCCHHHHHHHHHH-HHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHH
Confidence 9999996531 1 1111110 000 0112 24777776432 1111122267899999999999999887
Q ss_pred hCCCCCCCCCChHHHHHHHHHHCCCChHHHHHHH
Q 041381 197 VGQETLESHPDIPELAQTVAKECSGLPLALITTS 230 (307)
Q Consensus 197 ~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ig 230 (307)
+..... .--.+....|++.++|.+-.+..+.
T Consensus 187 ~~~~~~---~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 187 AAMRGL---QLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHTTC---CCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHcCC---CCCHHHHHHHHHHccCCHHHHHHHH
Confidence 743221 1224567788889998876655443
No 26
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.50 E-value=0.4 Score=40.05 Aligned_cols=142 Identities=13% Similarity=0.098 Sum_probs=78.1
Q ss_pred CceeeccccHHHHHHHHh---c---------CCceEEEEEcCchh---------------------------------HH
Q 041381 85 PTIIGLESTFDKVWRCLV---E---------GQFGIIGLYGMGGK---------------------------------AS 119 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGi---------------------------------~~ 119 (307)
.+++|.+..++.+.+.+. . ...+-+.++|.+|+ ..
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAA 85 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHH
Confidence 457888887777765542 1 12345779999998 11
Q ss_pred HHHH----HhcCCeEEEEEeCcCCHH-----------------HHhhcCCCCCC--CCCCCeEEEEecCChhhhh-c-cc
Q 041381 120 GIFN----LLSKMKFLLLLDDIWERI-----------------DLAKVGVPFPA--SSRNASKIVFTTRLVDVCG-L-ME 174 (307)
Q Consensus 120 ~l~~----~l~~kr~LlVlDdv~~~~-----------------~~~~l~~~~~~--~~~~gs~IivTtr~~~v~~-~-~~ 174 (307)
.+.. .......+|++|++.... .+..+... +. ....+..||.||....... . ..
T Consensus 86 ~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~~~~~vi~~tn~~~~ld~~l~~ 164 (262)
T 2qz4_A 86 RVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVE-MDGMGTTDHVIVLASTNRADILDGALMR 164 (262)
T ss_dssp HHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHH-HHTCCTTCCEEEEEEESCGGGGGSGGGS
T ss_pred HHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHH-hhCcCCCCCEEEEecCCChhhcCHHHhc
Confidence 1111 122346899999997530 11111111 10 1233566777776544211 1 11
Q ss_pred ---ccceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChH-HHHHH
Q 041381 175 ---AQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPL-ALITT 229 (307)
Q Consensus 175 ---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPL-ai~~i 229 (307)
....+.+...+.++-.+++...+.... ...........+++.+.|.+- .+..+
T Consensus 165 ~~R~~~~i~i~~p~~~~r~~il~~~~~~~~--~~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 165 PGRLDRHVFIDLPTLQERREIFEQHLKSLK--LTQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp TTSCCEEEECCSCCHHHHHHHHHHHHHHTT--CCBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CCcCCeEEEeCCcCHHHHHHHHHHHHHhCC--CCcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 234678899999999999988764332 122223345788888888754 44444
No 27
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.28 E-value=0.42 Score=41.75 Aligned_cols=142 Identities=14% Similarity=0.106 Sum_probs=85.1
Q ss_pred CceeeccccHHHHHHHHhc-----CCceEEEEEcCchh---------------------------HHHHHHHhc--CCeE
Q 041381 85 PTIIGLESTFDKVWRCLVE-----GQFGIIGLYGMGGK---------------------------ASGIFNLLS--KMKF 130 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGi---------------------------~~~l~~~l~--~kr~ 130 (307)
.+++|++..++.+..++.. .....+.|+|..|+ ...+...+. .+..
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSGDLAAILTNLSEGD 108 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSHHHHHHHHHTCCTTC
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccchhHHHHHHHhccCCC
Confidence 4689999999998888864 23456889999999 222333332 3567
Q ss_pred EEEEeCcCCH--HHH-------hhcCCCC----------CCCCCCCeEEEEecCChhh-hhcc--cccceeecCCCCHHh
Q 041381 131 LLLLDDIWER--IDL-------AKVGVPF----------PASSRNASKIVFTTRLVDV-CGLM--EAQKTFKVECFADQD 188 (307)
Q Consensus 131 LlVlDdv~~~--~~~-------~~l~~~~----------~~~~~~gs~IivTtr~~~v-~~~~--~~~~~~~l~~L~~~e 188 (307)
+|++|++... ... +.-.... .....++..+|.||..... ...+ .....+.+.+++.++
T Consensus 109 vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e 188 (338)
T 3pfi_A 109 ILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSE 188 (338)
T ss_dssp EEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHH
T ss_pred EEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHH
Confidence 8999999753 111 1111000 0001113456666654332 1111 123578999999999
Q ss_pred HHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChHHHHHH
Q 041381 189 AWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALITT 229 (307)
Q Consensus 189 ~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~i 229 (307)
...++...+..... .--.+....|++.+.|.|-.+..+
T Consensus 189 ~~~il~~~~~~~~~---~~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 189 LALILQKAALKLNK---TCEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp HHHHHHHHHHHTTC---EECHHHHHHHHHTTTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCC---CCCHHHHHHHHHHHCcCHHHHHHH
Confidence 99999887743321 112456778888999998555443
No 28
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.20 E-value=0.29 Score=43.50 Aligned_cols=142 Identities=13% Similarity=0.069 Sum_probs=82.8
Q ss_pred CceeeccccHHHHHHHHhc------------CCceEEEEEcCchh---------------------------------HH
Q 041381 85 PTIIGLESTFDKVWRCLVE------------GQFGIIGLYGMGGK---------------------------------AS 119 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGi---------------------------------~~ 119 (307)
.+++|.+..++.|.+.+.. ...+.+.|+|..|+ ..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~ 163 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEK 163 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHH
Confidence 4589999999988887642 23567889999998 11
Q ss_pred HHHHH----hcCCeEEEEEeCcCCH-------------HHHhh----cCCCCCCCCCCCeEEEEecCChh-hhhcc--cc
Q 041381 120 GIFNL----LSKMKFLLLLDDIWER-------------IDLAK----VGVPFPASSRNASKIVFTTRLVD-VCGLM--EA 175 (307)
Q Consensus 120 ~l~~~----l~~kr~LlVlDdv~~~-------------~~~~~----l~~~~~~~~~~gs~IivTtr~~~-v~~~~--~~ 175 (307)
.++.. -..+..+|++|++... ..... +... ......+..||.||.... +...+ ..
T Consensus 164 ~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~-~~~~~~~v~vI~atn~~~~l~~~l~~Rf 242 (357)
T 3d8b_A 164 MVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGA-TTSSEDRILVVGATNRPQEIDEAARRRL 242 (357)
T ss_dssp HHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC-----CCCCEEEEEEESCGGGBCHHHHTTC
T ss_pred HHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcc-cccCCCCEEEEEecCChhhCCHHHHhhC
Confidence 11111 1245689999999432 11111 1111 111223455666665432 21111 22
Q ss_pred cceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCC-ChHHHHHHH
Q 041381 176 QKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSG-LPLALITTS 230 (307)
Q Consensus 176 ~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~G-lPLai~~ig 230 (307)
...+.+...+.++..+++...+...... -..+....|++.+.| .+-.+..+.
T Consensus 243 ~~~i~i~~p~~~~r~~il~~~~~~~~~~---l~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 243 VKRLYIPLPEASARKQIVINLMSKEQCC---LSEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHHTSCBC---CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred ceEEEeCCcCHHHHHHHHHHHHhhcCCC---ccHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3467888899999999988876433211 124567889999988 455565554
No 29
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.03 E-value=0.16 Score=46.69 Aligned_cols=143 Identities=14% Similarity=0.159 Sum_probs=85.6
Q ss_pred CceeeccccH---HHHHHHHhcCCceEEEEEcCchh--------------------------HHHHHHHh--------cC
Q 041381 85 PTIIGLESTF---DKVWRCLVEGQFGIIGLYGMGGK--------------------------ASGIFNLL--------SK 127 (307)
Q Consensus 85 ~~~vGr~~~~---~~l~~~L~~~~~~vi~I~G~gGi--------------------------~~~l~~~l--------~~ 127 (307)
.+++|.+..+ ..+...+..+..+.+.++|..|+ ...+++.+ .+
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~~~~ir~~~~~a~~~~~~~ 105 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAG 105 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHHHHHHhhhcC
Confidence 4589998887 77888888787788999999999 22222221 35
Q ss_pred CeEEEEEeCcCCHH--HHhhcCCCCCCCCCCCeEEEEecCChh--hh-hcccccceeecCCCCHHhHHHHHHHHhCCCCC
Q 041381 128 MKFLLLLDDIWERI--DLAKVGVPFPASSRNASKIVFTTRLVD--VC-GLMEAQKTFKVECFADQDAWELFLKKVGQETL 202 (307)
Q Consensus 128 kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~gs~IivTtr~~~--v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 202 (307)
++.+|++|++.... ....+... +. .+.-.-|..||.+.. +. ....-...+.+++++.++-..++.+.+.....
T Consensus 106 ~~~iLfIDEI~~l~~~~q~~LL~~-le-~~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~ 183 (447)
T 3pvs_A 106 RRTILFVDEVHRFNKSQQDAFLPH-IE-DGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTR 183 (447)
T ss_dssp CCEEEEEETTTCC------CCHHH-HH-TTSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTT
T ss_pred CCcEEEEeChhhhCHHHHHHHHHH-Hh-cCceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhh
Confidence 67899999997532 22222221 21 122233334555543 11 11223457889999999999999887643110
Q ss_pred C---C-CCChHHHHHHHHHHCCCChHHHHHH
Q 041381 203 E---S-HPDIPELAQTVAKECSGLPLALITT 229 (307)
Q Consensus 203 ~---~-~~~l~~~~~~i~~~c~GlPLai~~i 229 (307)
. . ..--.+....|++.++|.+-.+..+
T Consensus 184 ~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 184 GYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp SSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred hhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 0 0 1123456677888888877655444
No 30
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.02 E-value=0.052 Score=47.42 Aligned_cols=141 Identities=12% Similarity=0.026 Sum_probs=82.1
Q ss_pred CceeeccccHHHHHHHHhcCC-ceEEEEEcCchh--------------------------HHHHH----HHhc-----CC
Q 041381 85 PTIIGLESTFDKVWRCLVEGQ-FGIIGLYGMGGK--------------------------ASGIF----NLLS-----KM 128 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGi--------------------------~~~l~----~~l~-----~k 128 (307)
.+++|.+..++.+.+++..+. ..++.+.|..|+ ...++ +... ++
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~ 105 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVRGPLTNFASAASFDGR 105 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCCHHHHHTHHHHHHHBCCCSSC
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccCHHHHHHHHHHHHhhcccCCC
Confidence 468999999999999998764 457777787888 22222 2222 26
Q ss_pred eEEEEEeCcCCHH---HHhhcCCCCCCCCCCCeEEEEecCChh-hhhcc-cccceeecCCCCHHhHHHH-------HHHH
Q 041381 129 KFLLLLDDIWERI---DLAKVGVPFPASSRNASKIVFTTRLVD-VCGLM-EAQKTFKVECFADQDAWEL-------FLKK 196 (307)
Q Consensus 129 r~LlVlDdv~~~~---~~~~l~~~~~~~~~~gs~IivTtr~~~-v~~~~-~~~~~~~l~~L~~~e~~~L-------f~~~ 196 (307)
..++++|++.... ....+... +.....+..+|+||.... +...+ .-...+.+++++.++-.++ +...
T Consensus 106 ~~vliiDEi~~l~~~~~~~~L~~~-le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~ 184 (324)
T 3u61_B 106 QKVIVIDEFDRSGLAESQRHLRSF-MEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEI 184 (324)
T ss_dssp EEEEEEESCCCGGGHHHHHHHHHH-HHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCcccCcHHHHHHHHHH-HHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 7899999998643 22322221 111124567887776643 11111 1224789999998874333 2222
Q ss_pred hCCCCCCCCCChHHHHHHHHHHCCCChHHHHH
Q 041381 197 VGQETLESHPDIPELAQTVAKECSGLPLALIT 228 (307)
Q Consensus 197 ~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ 228 (307)
+.......++ .+....|++.++|.+-.+..
T Consensus 185 ~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~~ 214 (324)
T 3u61_B 185 CKHEGIAIAD--MKVVAALVKKNFPDFRKTIG 214 (324)
T ss_dssp HHHHTCCBSC--HHHHHHHHHHTCSCTTHHHH
T ss_pred HHHcCCCCCc--HHHHHHHHHhCCCCHHHHHH
Confidence 3222211111 36677888999887664443
No 31
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.69 E-value=0.57 Score=40.81 Aligned_cols=142 Identities=13% Similarity=0.074 Sum_probs=83.8
Q ss_pred CceeeccccHHHHHHHHhc---------C---CceEEEEEcCchh---------------------------------HH
Q 041381 85 PTIIGLESTFDKVWRCLVE---------G---QFGIIGLYGMGGK---------------------------------AS 119 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~~---------~---~~~vi~I~G~gGi---------------------------------~~ 119 (307)
.+++|.+..++.|.+.+.. . ..+-+.++|.+|+ ..
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~ 97 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEK 97 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHH
Confidence 4689999999998887731 1 2456889999998 11
Q ss_pred HHHHH----hcCCeEEEEEeCcCCHH-------------HHhhcC---CCCCCCCCCCeEEEEecCChhhhh-cc--ccc
Q 041381 120 GIFNL----LSKMKFLLLLDDIWERI-------------DLAKVG---VPFPASSRNASKIVFTTRLVDVCG-LM--EAQ 176 (307)
Q Consensus 120 ~l~~~----l~~kr~LlVlDdv~~~~-------------~~~~l~---~~~~~~~~~gs~IivTtr~~~v~~-~~--~~~ 176 (307)
.++.. -..+..+|++|++.... ....+. .. +.....+..||.||....... .+ ...
T Consensus 98 ~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~~~~v~vi~atn~~~~ld~al~~Rf~ 176 (322)
T 3eie_A 98 LVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNG-VGNDSQGVLVLGATNIPWQLDSAIRRRFE 176 (322)
T ss_dssp HHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGG-GGTSCCCEEEEEEESCGGGSCHHHHHHCC
T ss_pred HHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcc-ccccCCceEEEEecCChhhCCHHHHcccC
Confidence 12211 12355899999997421 011111 11 112234566666776543211 11 223
Q ss_pred ceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCC-hHHHHHHH
Q 041381 177 KTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGL-PLALITTS 230 (307)
Q Consensus 177 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~Gl-PLai~~ig 230 (307)
..+.+...+.++-.++|...+..... .--......|++.+.|. +-.|..+.
T Consensus 177 ~~i~~~~p~~~~r~~il~~~~~~~~~---~~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 177 RRIYIPLPDLAARTTMFEINVGDTPC---VLTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEECCCCCHHHHHHHHHHHHTTCCC---CCCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHhccCCC---CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 46788889999999999998865431 11234567888888874 44444443
No 32
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.39 E-value=0.63 Score=41.71 Aligned_cols=143 Identities=10% Similarity=0.071 Sum_probs=81.8
Q ss_pred CceeeccccHHHHHHHHhc------------CCceEEEEEcCchh-----------------------------------
Q 041381 85 PTIIGLESTFDKVWRCLVE------------GQFGIIGLYGMGGK----------------------------------- 117 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGi----------------------------------- 117 (307)
.+++|.+..++.|...+.. ...+-+.|+|..|+
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~ 194 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEK 194 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHH
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHH
Confidence 4689999999999887732 12467889999999
Q ss_pred -HHHHHHHh-cCCeEEEEEeCcCCH-------------HHHhhcCCC---CCCCCCCCeEEEEecCChhhh-hcc--ccc
Q 041381 118 -ASGIFNLL-SKMKFLLLLDDIWER-------------IDLAKVGVP---FPASSRNASKIVFTTRLVDVC-GLM--EAQ 176 (307)
Q Consensus 118 -~~~l~~~l-~~kr~LlVlDdv~~~-------------~~~~~l~~~---~~~~~~~gs~IivTtr~~~v~-~~~--~~~ 176 (307)
...+.... .....+|++|++... .....+... ..........||.||...... ..+ ...
T Consensus 195 ~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~ 274 (389)
T 3vfd_A 195 LVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFI 274 (389)
T ss_dssp HHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCC
T ss_pred HHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcc
Confidence 11111111 234579999999642 001111100 000112334566666543221 111 123
Q ss_pred ceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChH-HHHHHH
Q 041381 177 KTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPL-ALITTS 230 (307)
Q Consensus 177 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPL-ai~~ig 230 (307)
..+.+...+.++..+++...+..... .-..+....|++.+.|..- ++..+.
T Consensus 275 ~~i~i~~p~~~~r~~il~~~~~~~~~---~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 275 KRVYVSLPNEETRLLLLKNLLCKQGS---PLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp EEEECCCCCHHHHHHHHHHHHTTSCC---CSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred eEEEcCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 46788899999999999888755431 1224566789999988554 554443
No 33
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.17 E-value=0.14 Score=46.95 Aligned_cols=97 Identities=16% Similarity=0.026 Sum_probs=58.3
Q ss_pred CeEEEEEeCcCCHH----HHhhcCCCCCC-CCCCCeEEEEecCChh---------hhhcccccceeecCCCCHHhHHHHH
Q 041381 128 MKFLLLLDDIWERI----DLAKVGVPFPA-SSRNASKIVFTTRLVD---------VCGLMEAQKTFKVECFADQDAWELF 193 (307)
Q Consensus 128 kr~LlVlDdv~~~~----~~~~l~~~~~~-~~~~gs~IivTtr~~~---------v~~~~~~~~~~~l~~L~~~e~~~Lf 193 (307)
+.-+|++||+.... .-+.+... +. ....|..||+||.+.. +...+..+..+.+++++.++-.+++
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~-l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHT-FNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHH-HHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCEEEEeCcccccCChHHHHHHHHH-HHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 56799999996422 11112111 10 0134677888887631 1222333457899999999999999
Q ss_pred HHHhCCCCCCCCCChHHHHHHHHHHCCCChHHHHH
Q 041381 194 LKKVGQETLESHPDIPELAQTVAKECSGLPLALIT 228 (307)
Q Consensus 194 ~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ 228 (307)
.+.+.......++ +....|++.++|.+-.+.-
T Consensus 273 ~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 273 RKMLEIEHGELPE---EVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp HHHHHHHTCCCCT---THHHHHHHHCCSCHHHHHH
T ss_pred HHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHH
Confidence 8887433222233 3466788899998765443
No 34
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.11 E-value=0.94 Score=40.12 Aligned_cols=142 Identities=13% Similarity=0.081 Sum_probs=81.9
Q ss_pred CceeeccccHHHHHHHHhc------------CCceEEEEEcCchh---------------------------------HH
Q 041381 85 PTIIGLESTFDKVWRCLVE------------GQFGIIGLYGMGGK---------------------------------AS 119 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGi---------------------------------~~ 119 (307)
.+++|.+..++.|.+.+.. ...+-|.++|..|+ ..
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~ 130 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEK 130 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHH
Confidence 4689999999998887631 12345788999998 11
Q ss_pred HHHHH----hcCCeEEEEEeCcCCHH-------------HHhhcCCCC--CCCCCCCeEEEEecCChhhhh-cc--cccc
Q 041381 120 GIFNL----LSKMKFLLLLDDIWERI-------------DLAKVGVPF--PASSRNASKIVFTTRLVDVCG-LM--EAQK 177 (307)
Q Consensus 120 ~l~~~----l~~kr~LlVlDdv~~~~-------------~~~~l~~~~--~~~~~~gs~IivTtr~~~v~~-~~--~~~~ 177 (307)
.++.. ...+..+|++|++.... ....+...+ +.....+..||.||....... .+ ....
T Consensus 131 ~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~ 210 (355)
T 2qp9_X 131 LVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFER 210 (355)
T ss_dssp HHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCE
T ss_pred HHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCE
Confidence 12221 12467899999997421 011111100 111234566666776543211 11 2335
Q ss_pred eeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCC-hHHHHHH
Q 041381 178 TFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGL-PLALITT 229 (307)
Q Consensus 178 ~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~Gl-PLai~~i 229 (307)
.+.+...+.++-.+++...+....... -......|++.+.|. +-.|..+
T Consensus 211 ~i~i~~P~~~~r~~il~~~l~~~~~~~---~~~~l~~la~~t~G~sg~dl~~l 260 (355)
T 2qp9_X 211 RIYIPLPDLAARTTMFEINVGDTPSVL---TKEDYRTLGAMTEGYSGSDIAVV 260 (355)
T ss_dssp EEECCCCCHHHHHHHHHHHHTTSCBCC---CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEeCCcCHHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHcCCCCHHHHHHH
Confidence 678889999999999998876543111 134567888999884 4344444
No 35
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.02 E-value=1 Score=38.83 Aligned_cols=135 Identities=13% Similarity=0.128 Sum_probs=79.1
Q ss_pred CceeeccccHHHHHHHHhc-------------CCceEEEEEcCchh----------------------------------
Q 041381 85 PTIIGLESTFDKVWRCLVE-------------GQFGIIGLYGMGGK---------------------------------- 117 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGi---------------------------------- 117 (307)
.+++|.+..+++|.+.+.. .....+.++|..|.
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~~ 94 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESE 94 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCchH
Confidence 4588999888888877642 23467889999998
Q ss_pred --HHH-HHHHhcCCeEEEEEeCcCCHHH----------------HhhcC---CCCCCCCCCCeEEEEecCChhhhh--cc
Q 041381 118 --ASG-IFNLLSKMKFLLLLDDIWERID----------------LAKVG---VPFPASSRNASKIVFTTRLVDVCG--LM 173 (307)
Q Consensus 118 --~~~-l~~~l~~kr~LlVlDdv~~~~~----------------~~~l~---~~~~~~~~~gs~IivTtr~~~v~~--~~ 173 (307)
... +.........+|++|++..... ...+. .. + ....+..||.||....... ..
T Consensus 95 ~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~-~-~~~~~v~vi~atn~~~~ld~al~ 172 (301)
T 3cf0_A 95 ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG-M-STKKNVFIIGATNRPDIIDPAIL 172 (301)
T ss_dssp THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHS-S-CTTSSEEEEEEESCGGGSCGGGG
T ss_pred HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhc-c-cCCCCEEEEEecCCccccChHHh
Confidence 011 1111123468999999964210 11111 11 1 1234567777776653321 11
Q ss_pred c---ccceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChHH
Q 041381 174 E---AQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLA 225 (307)
Q Consensus 174 ~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLa 225 (307)
. -...+.+...+.++-.+++...+..........+ ..+++.+.|.|-+
T Consensus 173 r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 173 RPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp STTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHTCSSCCHH
T ss_pred cCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchH----HHHHHHcCCCCHH
Confidence 1 2346889999999999999888754432222333 3455667777654
No 36
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.00 E-value=0.057 Score=46.72 Aligned_cols=69 Identities=7% Similarity=0.119 Sum_probs=41.2
Q ss_pred eEEEEEeCcC-----------CHHHHhhcCCCCCCCCCCCeEEEEecCChhhhh------cc--cccceeecCCCCHHhH
Q 041381 129 KFLLLLDDIW-----------ERIDLAKVGVPFPASSRNASKIVFTTRLVDVCG------LM--EAQKTFKVECFADQDA 189 (307)
Q Consensus 129 r~LlVlDdv~-----------~~~~~~~l~~~~~~~~~~gs~IivTtr~~~v~~------~~--~~~~~~~l~~L~~~e~ 189 (307)
..+|++|++. +......+... +.....+..+|.||....... .+ .....+.+++++.++-
T Consensus 131 ~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~-l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~ 209 (309)
T 3syl_A 131 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQV-MENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEEL 209 (309)
T ss_dssp TSEEEEETGGGSCCCC---CCTHHHHHHHHHH-HHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHH
T ss_pred CCEEEEEChhhhccCCCcccccHHHHHHHHHH-HhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHH
Confidence 4589999997 22223333222 222334567777776432211 00 1225789999999999
Q ss_pred HHHHHHHhC
Q 041381 190 WELFLKKVG 198 (307)
Q Consensus 190 ~~Lf~~~~~ 198 (307)
..++...+.
T Consensus 210 ~~il~~~l~ 218 (309)
T 3syl_A 210 FEIAGHMLD 218 (309)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988764
No 37
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.91 E-value=0.13 Score=45.46 Aligned_cols=100 Identities=6% Similarity=0.057 Sum_probs=59.3
Q ss_pred CeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEEEecCChh-hhhcc-cccceeecCCCCHHhHHHHHHHHhCCCCCC
Q 041381 128 MKFLLLLDDIWER--IDLAKVGVPFPASSRNASKIVFTTRLVD-VCGLM-EAQKTFKVECFADQDAWELFLKKVGQETLE 203 (307)
Q Consensus 128 kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IivTtr~~~-v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~ 203 (307)
+.-++|+|++... .....+... +.....++.+|++|.+.. +...+ .....+.+.+++.++..+.+...+...+..
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~-le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 212 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRT-MEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ 212 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHH-HHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE
T ss_pred CCeEEEEeCccccCHHHHHHHHHH-HHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 3448899998752 112222111 111123567777776532 22222 223578999999999999998876433211
Q ss_pred CCCChHHHHHHHHHHCCCChHHHHHHH
Q 041381 204 SHPDIPELAQTVAKECSGLPLALITTS 230 (307)
Q Consensus 204 ~~~~l~~~~~~i~~~c~GlPLai~~ig 230 (307)
.+ -.+....|++.++|.+-.+..+.
T Consensus 213 ~~--~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 213 LE--TKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EC--CSHHHHHHHHHHTTCHHHHHHHH
T ss_pred CC--cHHHHHHHHHHcCCCHHHHHHHH
Confidence 11 02466888999999987765554
No 38
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.62 E-value=2.2 Score=39.05 Aligned_cols=142 Identities=14% Similarity=0.142 Sum_probs=83.9
Q ss_pred CceeeccccHHHHHHHHhc------------CCceEEEEEcCchh-----H-----------------------------
Q 041381 85 PTIIGLESTFDKVWRCLVE------------GQFGIIGLYGMGGK-----A----------------------------- 118 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGi-----~----------------------------- 118 (307)
.+++|.+..++.|.+.+.. ...+-+.++|.+|+ +
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~ 213 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESE 213 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CC
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHH
Confidence 4588999988888877631 13467889999998 1
Q ss_pred ---HHHHHHh-cCCeEEEEEeCcCCH-------------HHHhhcCCCCCC---CCCCCeEEEEecCChhhhh-cc--cc
Q 041381 119 ---SGIFNLL-SKMKFLLLLDDIWER-------------IDLAKVGVPFPA---SSRNASKIVFTTRLVDVCG-LM--EA 175 (307)
Q Consensus 119 ---~~l~~~l-~~kr~LlVlDdv~~~-------------~~~~~l~~~~~~---~~~~gs~IivTtr~~~v~~-~~--~~ 175 (307)
..+.... ..+..+|++|++... .....+... +. ....+..||.||....... .+ ..
T Consensus 214 ~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~-l~~~~~~~~~v~vI~atn~~~~ld~al~rRf 292 (444)
T 2zan_A 214 KLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQ-MQGVGVDNDGILVLGATNIPWVLDSAIRRRF 292 (444)
T ss_dssp CTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTT-TTCSSCCCSSCEEEEEESCGGGSCHHHHTTC
T ss_pred HHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHH-HhCcccCCCCEEEEecCCCccccCHHHHhhc
Confidence 1111111 235689999999753 112222222 21 1234566776776543211 11 22
Q ss_pred cceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCC-hHHHHHHH
Q 041381 176 QKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGL-PLALITTS 230 (307)
Q Consensus 176 ~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~Gl-PLai~~ig 230 (307)
...+.+...+.++-..+|...+....... -......|++.+.|. +-.|..+.
T Consensus 293 ~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 293 EKRIYIPLPEAHARAAMFRLHLGSTQNSL---TEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHTTSCEEC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred ceEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34677888889999999988875433111 134567888999884 43454443
No 39
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.55 E-value=1.6 Score=38.00 Aligned_cols=143 Identities=13% Similarity=0.125 Sum_probs=81.3
Q ss_pred CceeeccccHHHHHHHHhc---------C---CceEEEEEcCchh----------------------------------H
Q 041381 85 PTIIGLESTFDKVWRCLVE---------G---QFGIIGLYGMGGK----------------------------------A 118 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~~---------~---~~~vi~I~G~gGi----------------------------------~ 118 (307)
.+++|.++.++.|.+.+.. + ..+-+.++|.+|+ .
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~ 91 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESE 91 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCH
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHH
Confidence 4578888888877766531 1 2356788898888 1
Q ss_pred HHHHHH----hcCCeEEEEEeCcCCHH-------------HHhhcCCCC--CCCCCCCeEEEEecCChhhhh-cc--ccc
Q 041381 119 SGIFNL----LSKMKFLLLLDDIWERI-------------DLAKVGVPF--PASSRNASKIVFTTRLVDVCG-LM--EAQ 176 (307)
Q Consensus 119 ~~l~~~----l~~kr~LlVlDdv~~~~-------------~~~~l~~~~--~~~~~~gs~IivTtr~~~v~~-~~--~~~ 176 (307)
+.++.. -..+..+|++|++.... ....+...+ +.....+..||.||....... .+ ...
T Consensus 92 ~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~ 171 (322)
T 1xwi_A 92 KLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFE 171 (322)
T ss_dssp HHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCC
T ss_pred HHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcC
Confidence 111111 12456899999997430 011111000 111234556666665443211 11 223
Q ss_pred ceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCC-hHHHHHHH
Q 041381 177 KTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGL-PLALITTS 230 (307)
Q Consensus 177 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~Gl-PLai~~ig 230 (307)
..+.+...+.++-.+++...+...... --......|++.+.|. +-.+..+.
T Consensus 172 ~~i~i~~P~~~~r~~il~~~l~~~~~~---l~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 172 KRIYIPLPEPHARAAMFKLHLGTTQNS---LTEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp EEEECCCCCHHHHHHHHHHHHTTCCBC---CCHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred eEEEeCCcCHHHHHHHHHHHHhcCCCC---CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 567888899999999998887544311 1235568899999887 43455443
No 40
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=93.37 E-value=1.2 Score=37.91 Aligned_cols=140 Identities=13% Similarity=0.057 Sum_probs=80.8
Q ss_pred CceeeccccHHHHHHHHhc------------CCceEEEEEcCchh---------------------------------HH
Q 041381 85 PTIIGLESTFDKVWRCLVE------------GQFGIIGLYGMGGK---------------------------------AS 119 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGi---------------------------------~~ 119 (307)
.+++|.+..++.+.+.+.. .....+.|+|..|+ ..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~ 100 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEK 100 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHH
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHH
Confidence 4689999999988887632 13467889999998 11
Q ss_pred HHH----HHhcCCeEEEEEeCcCCHH-------------H----HhhcCCCCCCC--CCCCeEEEEecCChhhh-hcc--
Q 041381 120 GIF----NLLSKMKFLLLLDDIWERI-------------D----LAKVGVPFPAS--SRNASKIVFTTRLVDVC-GLM-- 173 (307)
Q Consensus 120 ~l~----~~l~~kr~LlVlDdv~~~~-------------~----~~~l~~~~~~~--~~~gs~IivTtr~~~v~-~~~-- 173 (307)
.++ .....+..+|++|++.... . +..+. . ++. .+.+..||.||...... ..+
T Consensus 101 ~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~-~-~~~~~~~~~v~vi~~tn~~~~l~~~l~~ 178 (297)
T 3b9p_A 101 LVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFD-G-LPGNPDGDRIVVLAATNRPQELDEAALR 178 (297)
T ss_dssp HHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHH-H-CC------CEEEEEEESCGGGBCHHHHH
T ss_pred HHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHh-c-ccccCCCCcEEEEeecCChhhCCHHHHh
Confidence 111 1122456899999995420 0 11111 1 111 12345677777654321 111
Q ss_pred cccceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChH-HHHHH
Q 041381 174 EAQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPL-ALITT 229 (307)
Q Consensus 174 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPL-ai~~i 229 (307)
.....+.+...+.++...++...+..... +--......|++.+.|.+- ++..+
T Consensus 179 R~~~~i~~~~p~~~~r~~il~~~~~~~~~---~~~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 179 RFTKRVYVSLPDEQTRELLLNRLLQKQGS---PLDTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp HCCEEEECCCCCHHHHHHHHHHHHGGGSC---CSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred hCCeEEEeCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 12346777888888888888877643321 1123566788999999876 45444
No 41
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.23 E-value=0.79 Score=40.42 Aligned_cols=49 Identities=8% Similarity=0.047 Sum_probs=34.1
Q ss_pred ceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCC-CChHHHHH
Q 041381 177 KTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECS-GLPLALIT 228 (307)
Q Consensus 177 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~-GlPLai~~ 228 (307)
..+.+.+++.++..+++...+...... --.+....|++.+. |.|-.+..
T Consensus 252 ~~i~~~~~~~~e~~~il~~~~~~~~~~---~~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 252 LIVSTTPYSEKDTKQILRIRCEEEDVE---MSEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHTTCC---BCHHHHHHHHHHHHHSCHHHHHH
T ss_pred cEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHhcCCCHHHHHH
Confidence 347899999999999999877543211 12456778888887 77665443
No 42
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=91.95 E-value=2 Score=37.48 Aligned_cols=94 Identities=10% Similarity=-0.013 Sum_probs=59.4
Q ss_pred CCeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEEEecCChh-hhhcc-cccceeecCCCCHHhHHHHHHHHhCCCCC
Q 041381 127 KMKFLLLLDDIWER--IDLAKVGVPFPASSRNASKIVFTTRLVD-VCGLM-EAQKTFKVECFADQDAWELFLKKVGQETL 202 (307)
Q Consensus 127 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IivTtr~~~-v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 202 (307)
+++-++|+|+++.. ...+.+... +-....++.+|++|.+.+ +...+ +-...+.+.+++.++..+.+.....
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~-lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~---- 181 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKT-LEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT---- 181 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHH-HTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC----
T ss_pred CCcEEEEECchhhcCHHHHHHHHHH-hcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC----
Confidence 46788999999752 222222221 222234567776666543 33222 3345789999999999998887751
Q ss_pred CCCCChHHHHHHHHHHCCCChHHHHHH
Q 041381 203 ESHPDIPELAQTVAKECSGLPLALITT 229 (307)
Q Consensus 203 ~~~~~l~~~~~~i~~~c~GlPLai~~i 229 (307)
--.+....+++.++|.|..+..+
T Consensus 182 ----~~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 182 ----MSQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp ----CCHHHHHHHHHHTTTCHHHHHHT
T ss_pred ----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 11345678999999999876544
No 43
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=91.30 E-value=0.24 Score=43.40 Aligned_cols=21 Identities=5% Similarity=0.268 Sum_probs=18.6
Q ss_pred ceeecCCCCHHhHHHHHHHHh
Q 041381 177 KTFKVECFADQDAWELFLKKV 197 (307)
Q Consensus 177 ~~~~l~~L~~~e~~~Lf~~~~ 197 (307)
..+.+.+++.++-.+++..++
T Consensus 191 ~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 191 TEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp EEEECCCCCHHHHHHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHH
Confidence 468899999999999998876
No 44
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=91.19 E-value=2.4 Score=39.03 Aligned_cols=108 Identities=16% Similarity=0.124 Sum_probs=62.5
Q ss_pred ceeeccccHHHHHHHHhcCCceEEEEEcCchh-----HHHHHHHh-----------------------------------
Q 041381 86 TIIGLESTFDKVWRCLVEGQFGIIGLYGMGGK-----ASGIFNLL----------------------------------- 125 (307)
Q Consensus 86 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGi-----~~~l~~~l----------------------------------- 125 (307)
.+|||+.+++.+.+.|......-+.++|.+|+ ++.+...+
T Consensus 181 ~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~e~~~~~~~ 260 (468)
T 3pxg_A 181 PVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVM 260 (468)
T ss_dssp CCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTHHHHH
T ss_pred CccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccccchHHHHHHHHH
Confidence 58999999999999987664455678999998 22222221
Q ss_pred ----cCCeEEEEEeCcCCHHHHhhcCCCCCCCCCCCeEEEEecCChhh------h-hcccccceeecCCCCHHhHHHHHH
Q 041381 126 ----SKMKFLLLLDDIWERIDLAKVGVPFPASSRNASKIVFTTRLVDV------C-GLMEAQKTFKVECFADQDAWELFL 194 (307)
Q Consensus 126 ----~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IivTtr~~~v------~-~~~~~~~~~~l~~L~~~e~~~Lf~ 194 (307)
..+..+|++| -..+....+... +. .....+|.+|..... - ....-...+.+++.+.++..+++.
T Consensus 261 ~~~~~~~~~iLfiD--~~~~a~~~L~~~-L~--~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~ 335 (468)
T 3pxg_A 261 DEIRQAGNIILFID--AAIDASNILKPS-LA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQ 335 (468)
T ss_dssp HHHHTCCCCEEEEC--C--------CCC-TT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHH
T ss_pred HHHHhcCCeEEEEe--CchhHHHHHHHh-hc--CCCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHH
Confidence 1235677888 222222223332 32 123455555544331 1 111122368999999999999998
Q ss_pred HHhC
Q 041381 195 KKVG 198 (307)
Q Consensus 195 ~~~~ 198 (307)
..+.
T Consensus 336 ~~~~ 339 (468)
T 3pxg_A 336 GLRD 339 (468)
T ss_dssp HTTT
T ss_pred HHHH
Confidence 7664
No 45
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.74 E-value=1.1 Score=39.22 Aligned_cols=139 Identities=13% Similarity=0.165 Sum_probs=81.5
Q ss_pred ceeeccccHHHHHHHHhcCCceEEEEEcCchh---------H-----------------------HHHH----HHh----
Q 041381 86 TIIGLESTFDKVWRCLVEGQFGIIGLYGMGGK---------A-----------------------SGIF----NLL---- 125 (307)
Q Consensus 86 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGi---------~-----------------------~~l~----~~l---- 125 (307)
+++|.+..++.+...+..++.+-+.++|..|+ . ..++ ...
T Consensus 26 ~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~~~~ 105 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQ 105 (340)
T ss_dssp GCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHHBCC
T ss_pred HhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHhhcc
Confidence 46888888888888888776555889999998 1 1111 111
Q ss_pred --cCCeEEEEEeCcCC--HHHHhhcCCCCCCCCCCCeEEEEecCChh-hhhcc-cccceeecCCCCHHhHHHHHHHHhCC
Q 041381 126 --SKMKFLLLLDDIWE--RIDLAKVGVPFPASSRNASKIVFTTRLVD-VCGLM-EAQKTFKVECFADQDAWELFLKKVGQ 199 (307)
Q Consensus 126 --~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~IivTtr~~~-v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~ 199 (307)
.+.+-++|+|++.. ....+.+... +......+.+|++|.... +...+ +-...+.+.+++.++..+.+...+..
T Consensus 106 ~~~~~~~viiiDe~~~l~~~~~~~L~~~-le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~ 184 (340)
T 1sxj_C 106 IFSKGFKLIILDEADAMTNAAQNALRRV-IERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVH 184 (340)
T ss_dssp SSSCSCEEEEETTGGGSCHHHHHHHHHH-HHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHT
T ss_pred cCCCCceEEEEeCCCCCCHHHHHHHHHH-HhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHH
Confidence 12357889999854 2222222111 111123456666665432 21111 22346788999999988888877633
Q ss_pred CCCCCCCChHHHHHHHHHHCCCChHHHHH
Q 041381 200 ETLESHPDIPELAQTVAKECSGLPLALIT 228 (307)
Q Consensus 200 ~~~~~~~~l~~~~~~i~~~c~GlPLai~~ 228 (307)
..... -.+..+.|++.++|.+--+..
T Consensus 185 ~~~~i---~~~~~~~i~~~s~G~~r~~~~ 210 (340)
T 1sxj_C 185 EKLKL---SPNAEKALIELSNGDMRRVLN 210 (340)
T ss_dssp TTCCB---CHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 22111 134667888888988775433
No 46
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=90.16 E-value=4 Score=40.01 Aligned_cols=108 Identities=16% Similarity=0.127 Sum_probs=63.6
Q ss_pred ceeeccccHHHHHHHHhcCCceEEEEEcCchh-----HHHHHHHh-----------------------------------
Q 041381 86 TIIGLESTFDKVWRCLVEGQFGIIGLYGMGGK-----ASGIFNLL----------------------------------- 125 (307)
Q Consensus 86 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGi-----~~~l~~~l----------------------------------- 125 (307)
.+|||+.+++.+...|......-+.++|.+|+ ++.+.+.+
T Consensus 181 ~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~~G~~e~~l~~~~ 260 (758)
T 3pxi_A 181 PVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVM 260 (758)
T ss_dssp CCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTHHHHH
T ss_pred CccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccccccchHHHHHHHHH
Confidence 58999999999999987765555779999998 22222221
Q ss_pred ----cCCeEEEEEeCcCCHHHHhhcCCCCCCCCCCCeEEEEecCChhhh------h-cccccceeecCCCCHHhHHHHHH
Q 041381 126 ----SKMKFLLLLDDIWERIDLAKVGVPFPASSRNASKIVFTTRLVDVC------G-LMEAQKTFKVECFADQDAWELFL 194 (307)
Q Consensus 126 ----~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IivTtr~~~v~------~-~~~~~~~~~l~~L~~~e~~~Lf~ 194 (307)
..++.+|++| ...+....+... +. .....+|.||...... . ...--..+.++..+.++..+++.
T Consensus 261 ~~~~~~~~~iLfiD--~~~~~~~~L~~~-l~--~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~ 335 (758)
T 3pxi_A 261 DEIRQAGNIILFID--AAIDASNILKPS-LA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQ 335 (758)
T ss_dssp HHHHTCCCCEEEEC--C--------CCC-TT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHH
T ss_pred HHHHhcCCEEEEEc--CchhHHHHHHHH-Hh--cCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHH
Confidence 2346788888 222222223322 22 2234566555544311 1 01112468999999999999998
Q ss_pred HHhC
Q 041381 195 KKVG 198 (307)
Q Consensus 195 ~~~~ 198 (307)
....
T Consensus 336 ~~~~ 339 (758)
T 3pxi_A 336 GLRD 339 (758)
T ss_dssp HTTT
T ss_pred HHHH
Confidence 7654
No 47
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=89.39 E-value=2 Score=42.08 Aligned_cols=110 Identities=15% Similarity=0.201 Sum_probs=67.0
Q ss_pred CceeeccccHHHHHHHHhcCCceEEEEEcCchh-----HHHHH-------------------------------------
Q 041381 85 PTIIGLESTFDKVWRCLVEGQFGIIGLYGMGGK-----ASGIF------------------------------------- 122 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGi-----~~~l~------------------------------------- 122 (307)
..++||+.+++.+.+.|......-+.++|..|+ ++.+.
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~ 265 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEK 265 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHH
T ss_pred CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHH
Confidence 358999999999999988765566789999998 11111
Q ss_pred ---HHh----cCCeEEEEEeCcCCH----------HH-HhhcCCCCCCCCCCCeEEEEecCChhhhhc-------ccccc
Q 041381 123 ---NLL----SKMKFLLLLDDIWER----------ID-LAKVGVPFPASSRNASKIVFTTRLVDVCGL-------MEAQK 177 (307)
Q Consensus 123 ---~~l----~~kr~LlVlDdv~~~----------~~-~~~l~~~~~~~~~~gs~IivTtr~~~v~~~-------~~~~~ 177 (307)
..+ ..+..+|++|++... .+ ...+... +. ..+..+|.+|........ ..-..
T Consensus 266 ~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~-l~--~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~ 342 (758)
T 1r6b_X 266 RFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPL-LS--SGKIRVIGSTTYQEFSNIFEKDRALARRFQ 342 (758)
T ss_dssp HHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSC-SS--SCCCEEEEEECHHHHHCCCCCTTSSGGGEE
T ss_pred HHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHH-Hh--CCCeEEEEEeCchHHhhhhhcCHHHHhCce
Confidence 111 123588999999743 12 2223332 32 223455555544332111 11123
Q ss_pred eeecCCCCHHhHHHHHHHHh
Q 041381 178 TFKVECFADQDAWELFLKKV 197 (307)
Q Consensus 178 ~~~l~~L~~~e~~~Lf~~~~ 197 (307)
.+.+++.+.++..+++....
T Consensus 343 ~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 343 KIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp EEECCCCCHHHHHHHHHHHH
T ss_pred EEEcCCCCHHHHHHHHHHHH
Confidence 68899999999988887654
No 48
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=88.53 E-value=3.5 Score=38.25 Aligned_cols=138 Identities=14% Similarity=0.100 Sum_probs=80.1
Q ss_pred ceeeccccHHHHHHHHhc-------------CCceEEEEEcCchh---------------------------------H-
Q 041381 86 TIIGLESTFDKVWRCLVE-------------GQFGIIGLYGMGGK---------------------------------A- 118 (307)
Q Consensus 86 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGi---------------------------------~- 118 (307)
.++|.+..+++|.+.+.. ....-+.|+|..|+ .
T Consensus 205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~ 284 (489)
T 3hu3_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESES 284 (489)
T ss_dssp GCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHH
Confidence 589999999888877642 23456889999998 1
Q ss_pred ---HHHHHHhcCCeEEEEEeCcCCH----------------HHHhhcCCCCCCCCCCCeEEEEecCChhh-hhcc----c
Q 041381 119 ---SGIFNLLSKMKFLLLLDDIWER----------------IDLAKVGVPFPASSRNASKIVFTTRLVDV-CGLM----E 174 (307)
Q Consensus 119 ---~~l~~~l~~kr~LlVlDdv~~~----------------~~~~~l~~~~~~~~~~gs~IivTtr~~~v-~~~~----~ 174 (307)
..+.....++..+|+||++... ..+..+... + ....+..||.||..... -..+ .
T Consensus 285 ~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~-~-~~~~~v~vIaaTn~~~~Ld~al~r~gR 362 (489)
T 3hu3_A 285 NLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDG-L-KQRAHVIVMAATNRPNSIDPALRRFGR 362 (489)
T ss_dssp HHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHH-S-CTTSCEEEEEEESCGGGBCGGGGSTTS
T ss_pred HHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhc-c-ccCCceEEEEecCCccccCHHHhCCCc
Confidence 1122223356689999999311 111111111 1 12334566667665532 1111 1
Q ss_pred ccceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCC-hHHHHHH
Q 041381 175 AQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGL-PLALITT 229 (307)
Q Consensus 175 ~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~Gl-PLai~~i 229 (307)
-...+.+...+.++-.+++..++..........+ ..+++.+.|. +-.+..+
T Consensus 363 f~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l----~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 363 FDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHVGADLAAL 414 (489)
T ss_dssp SCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCH----HHHHHTCTTCCHHHHHHH
T ss_pred CceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhH----HHHHHHccCCcHHHHHHH
Confidence 2346889999999999999988754432233333 4566677774 4444433
No 49
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=88.10 E-value=0.6 Score=46.62 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=26.3
Q ss_pred ceeeccccHHHHHHHHhcCCceEEEEEcCchh
Q 041381 86 TIIGLESTFDKVWRCLVEGQFGIIGLYGMGGK 117 (307)
Q Consensus 86 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGi 117 (307)
.++||++++..+++.|......-+.++|.+|+
T Consensus 171 ~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~ 202 (854)
T 1qvr_A 171 PVIGRDEEIRRVIQILLRRTKNNPVLIGEPGV 202 (854)
T ss_dssp CCCSCHHHHHHHHHHHHCSSCCCCEEEECTTS
T ss_pred ccCCcHHHHHHHHHHHhcCCCCceEEEcCCCC
Confidence 47999999999999987765455678888888
No 50
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=88.04 E-value=0.92 Score=38.06 Aligned_cols=135 Identities=16% Similarity=0.111 Sum_probs=73.5
Q ss_pred CceeeccccHHHHHHHHhc------------CCceEEEEEcCchh-----HHHHHH------------------------
Q 041381 85 PTIIGLESTFDKVWRCLVE------------GQFGIIGLYGMGGK-----ASGIFN------------------------ 123 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGi-----~~~l~~------------------------ 123 (307)
.+++|.+..++.+.+.+.. ...+-+.++|..|+ ++.+..
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~ 90 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGAS 90 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSS
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchHHH
Confidence 4689999888888776541 11233668898888 222211
Q ss_pred --------HhcCCeEEEEEeCcCCHH-----------------HHhhcCCCCCCC---CCCCeEEEEecCChhhhh--cc
Q 041381 124 --------LLSKMKFLLLLDDIWERI-----------------DLAKVGVPFPAS---SRNASKIVFTTRLVDVCG--LM 173 (307)
Q Consensus 124 --------~l~~kr~LlVlDdv~~~~-----------------~~~~l~~~~~~~---~~~gs~IivTtr~~~v~~--~~ 173 (307)
....+..+|++|++.... ....+... +.. ......||.||....... ..
T Consensus 91 ~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~-l~~~~~~~~~v~vi~ttn~~~~ld~~l~ 169 (268)
T 2r62_A 91 RVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAE-MDGFGSENAPVIVLAATNRPEILDPALM 169 (268)
T ss_dssp SSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTT-TTCSSCSCSCCEEEECBSCCTTSCGGGG
T ss_pred HHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHH-hhCcccCCCCEEEEEecCCchhcCHhHc
Confidence 111234799999995421 12222222 211 122345677776554211 11
Q ss_pred c---ccceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChH
Q 041381 174 E---AQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPL 224 (307)
Q Consensus 174 ~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPL 224 (307)
. -...+.+...+.++-.+++...+..........+ ..|++.+.|.|-
T Consensus 170 r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~----~~la~~~~g~~g 219 (268)
T 2r62_A 170 RPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNL----QEVAKLTAGLAG 219 (268)
T ss_dssp SSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCT----TTTTSSSCSSCH
T ss_pred CCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCH----HHHHHHcCCCCH
Confidence 1 2346788889999999999887643321112222 335566777654
No 51
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=86.10 E-value=2 Score=37.17 Aligned_cols=69 Identities=13% Similarity=0.101 Sum_probs=44.1
Q ss_pred CCeEEEEEeCcCCH--HHHhhcCCCCCCCCCCCeEEEEecCCh-hhhhcccccceeecCCCCHHhHHHHHHHHh
Q 041381 127 KMKFLLLLDDIWER--IDLAKVGVPFPASSRNASKIVFTTRLV-DVCGLMEAQKTFKVECFADQDAWELFLKKV 197 (307)
Q Consensus 127 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IivTtr~~-~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 197 (307)
+++-++|+|++... ...+.+... +-.....+.+|++|.+. .+...+... .+++.++++++..+.+.+.+
T Consensus 81 ~~~kvviIdead~lt~~a~naLLk~-LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQAANAFLKA-LEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp SSSEEEEETTGGGBCHHHHHHTHHH-HHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred CCceEEEeccHHHhCHHHHHHHHHH-HhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 45678899999752 333333222 22223456666666443 454444455 89999999999999998876
No 52
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.00 E-value=11 Score=33.86 Aligned_cols=135 Identities=16% Similarity=0.173 Sum_probs=80.9
Q ss_pred ceeeccccHHHHHHHHhc-----------C--CceEEEEEcCchh---------------------------------HH
Q 041381 86 TIIGLESTFDKVWRCLVE-----------G--QFGIIGLYGMGGK---------------------------------AS 119 (307)
Q Consensus 86 ~~vGr~~~~~~l~~~L~~-----------~--~~~vi~I~G~gGi---------------------------------~~ 119 (307)
++.|.++.+++|.+.+.- + ..+=+.++|++|. .+
T Consensus 149 dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~ 228 (405)
T 4b4t_J 149 MVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSR 228 (405)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHH
Confidence 466888888877765531 1 3466889999998 23
Q ss_pred HHHHHh----cCCeEEEEEeCcCCHH----------------HHhhcCCCCCC--CCCCCeEEEEecCChhhhhc--c--
Q 041381 120 GIFNLL----SKMKFLLLLDDIWERI----------------DLAKVGVPFPA--SSRNASKIVFTTRLVDVCGL--M-- 173 (307)
Q Consensus 120 ~l~~~l----~~kr~LlVlDdv~~~~----------------~~~~l~~~~~~--~~~~gs~IivTtr~~~v~~~--~-- 173 (307)
.+++.+ ....++|.+|+++... ....+... +. ....+..||.||...+.... .
T Consensus 229 ~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~-lDg~~~~~~V~vIaATNrpd~LDpAllRp 307 (405)
T 4b4t_J 229 MVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQ-LDGFETSKNIKIIMATNRLDILDPALLRP 307 (405)
T ss_dssp HHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHH-HHTTTCCCCEEEEEEESCSSSSCHHHHST
T ss_pred HHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHh-hhccCCCCCeEEEeccCChhhCCHhHcCC
Confidence 333333 3467999999997310 11111111 11 22345567777776554221 1
Q ss_pred -cccceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChHH
Q 041381 174 -EAQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLA 225 (307)
Q Consensus 174 -~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLa 225 (307)
.-...+.+...+.++-.++|+.+........+.++ ..|++.+.|.--|
T Consensus 308 GRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl----~~lA~~t~G~SGA 356 (405)
T 4b4t_J 308 GRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINL----RKVAEKMNGCSGA 356 (405)
T ss_dssp TSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCH----HHHHHHCCSCCHH
T ss_pred CcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCH----HHHHHHCCCCCHH
Confidence 23567889999999999999888755442333343 5667788876443
No 53
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=83.77 E-value=12 Score=32.16 Aligned_cols=91 Identities=14% Similarity=0.059 Sum_probs=51.6
Q ss_pred eEEEEEeCcCCHH---H-HhhcCCCCCC-CCCCCeEEEEecCChh---------hhhcccccceeecCCCCHHhHHHHHH
Q 041381 129 KFLLLLDDIWERI---D-LAKVGVPFPA-SSRNASKIVFTTRLVD---------VCGLMEAQKTFKVECFADQDAWELFL 194 (307)
Q Consensus 129 r~LlVlDdv~~~~---~-~~~l~~~~~~-~~~~gs~IivTtr~~~---------v~~~~~~~~~~~l~~L~~~e~~~Lf~ 194 (307)
..+|++||+.... . .+.+... +. ....|..||+||.+.. +...+.....+.+++ +.++..+++.
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~-l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~ 176 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHI-FNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIK 176 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHH-HHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHH
T ss_pred CCEEEEcCcccccCChHHHHHHHHH-HHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHH
Confidence 5689999996532 1 1111111 10 0123557888775431 112222335689999 9999999998
Q ss_pred HHhCCCCCCCCCChHHHHHHHHHHCCCChHH
Q 041381 195 KKVGQETLESHPDIPELAQTVAKECSGLPLA 225 (307)
Q Consensus 195 ~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLa 225 (307)
..+....... -.+....|++.+ |..-.
T Consensus 177 ~~~~~~~~~l---~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 177 EKLKEFNLEL---RKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHHTTCCC---CHHHHHHHHHHC-SSHHH
T ss_pred HHHHhcCCCC---CHHHHHHHHHhC-CCHHH
Confidence 8874332111 245567788888 66543
No 54
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.20 E-value=10 Score=34.52 Aligned_cols=134 Identities=15% Similarity=0.162 Sum_probs=78.6
Q ss_pred ceeeccccHHHHHHHHhc----C---------CceEEEEEcCchh---------------------------------HH
Q 041381 86 TIIGLESTFDKVWRCLVE----G---------QFGIIGLYGMGGK---------------------------------AS 119 (307)
Q Consensus 86 ~~vGr~~~~~~l~~~L~~----~---------~~~vi~I~G~gGi---------------------------------~~ 119 (307)
++.|.++.+++|.+.+.- . ..+=|.++|++|. ..
T Consensus 182 digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~ 261 (437)
T 4b4t_L 182 GIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESAR 261 (437)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHH
T ss_pred HhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHH
Confidence 466788888777765531 1 3567889999998 22
Q ss_pred HHHHHh----cCCeEEEEEeCcCCH----------------HHHhhcCCCCC--CCCCCCeEEEEecCChhhhhc--cc-
Q 041381 120 GIFNLL----SKMKFLLLLDDIWER----------------IDLAKVGVPFP--ASSRNASKIVFTTRLVDVCGL--ME- 174 (307)
Q Consensus 120 ~l~~~l----~~kr~LlVlDdv~~~----------------~~~~~l~~~~~--~~~~~gs~IivTtr~~~v~~~--~~- 174 (307)
.++..+ ....++|.+|+++.. ..+..+... + .....+..||.||...+.... ..
T Consensus 262 ~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~-lDg~~~~~~vivI~ATNrp~~LDpAllRp 340 (437)
T 4b4t_L 262 IIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQ-MDGFDNLGQTKIIMATNRPDTLDPALLRP 340 (437)
T ss_dssp HHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHH-HHSSSCTTSSEEEEEESSTTSSCTTTTST
T ss_pred HHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHH-hhcccCCCCeEEEEecCCchhhCHHHhCC
Confidence 233222 346799999999631 011112111 1 022345577778876554321 11
Q ss_pred --ccceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChH
Q 041381 175 --AQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPL 224 (307)
Q Consensus 175 --~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPL 224 (307)
-...+.+...+.++-.++|+.+........+.++ ..|++.+.|.--
T Consensus 341 GRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl----~~lA~~t~G~sG 388 (437)
T 4b4t_L 341 GRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF----EAAVKMSDGFNG 388 (437)
T ss_dssp TSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCH----HHHHHTCCSCCH
T ss_pred CccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhCCCCCH
Confidence 2456788888888888999887754332223333 566778877643
No 55
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=82.67 E-value=13 Score=32.24 Aligned_cols=96 Identities=9% Similarity=0.154 Sum_probs=57.1
Q ss_pred eeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChHHHHHHHHH------HcCC--CChhHHHHHHHHH
Q 041381 178 TFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPLALITTSRA------MSSK--KRPEERSYAIQML 249 (307)
Q Consensus 178 ~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ig~~------L~~~--~~~~~w~~~l~~l 249 (307)
...+++.+.++-.+++.+.+..... .--.+.+..|++.++|.|-.+..+... +.+. -+.+.-+.+++.+
T Consensus 174 ~~~Ld~~~~~~l~~iL~~~~~~~~~---~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 174 ILELDFYTVKELKEIIKRAASLMDV---EIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVL 250 (334)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHTTC---CBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred eeeCCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 5789999999999999887643221 123567899999999999765443322 1221 3555666666655
Q ss_pred hhccccCCCChhHHHHHHHHhhcCCCC
Q 041381 250 RRSAYEFPGMEKEVFRLLKFSYDSLSS 276 (307)
Q Consensus 250 ~~~~~~~~~~~~~i~~~l~~sy~~L~~ 276 (307)
.......+..+..+..++.-+|..=|-
T Consensus 251 ~~~~~~l~~~~~~~l~~~~~~~~~~~~ 277 (334)
T 1in4_A 251 NIDDEGLDEFDRKILKTIIEIYRGGPV 277 (334)
T ss_dssp TCCTTCCCHHHHHHHHHHHHHSTTCCB
T ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCcc
Confidence 432222222233566666666654343
No 56
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=82.59 E-value=8.1 Score=33.54 Aligned_cols=100 Identities=11% Similarity=-0.071 Sum_probs=60.3
Q ss_pred cCCeEEEEEeCcCC---HHHHhhcCCCCCCCCCCCeEEEEecCC-------hhhhhcc-cccceeecCCCCHHhHHHHHH
Q 041381 126 SKMKFLLLLDDIWE---RIDLAKVGVPFPASSRNASKIVFTTRL-------VDVCGLM-EAQKTFKVECFADQDAWELFL 194 (307)
Q Consensus 126 ~~kr~LlVlDdv~~---~~~~~~l~~~~~~~~~~gs~IivTtr~-------~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~ 194 (307)
-+++-++|+|++.. ...++.+... +.....++.+|++|.. ..+...+ .....+...+++.++-...+.
T Consensus 74 f~~~kvvii~~~~~kl~~~~~~aLl~~-le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~ 152 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNAAINEQLLTL-TGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVA 152 (343)
T ss_dssp CCSCEEEEEECCSSCCCTTHHHHHHHH-HTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHH
T ss_pred ccCCeEEEEECCCCCCChHHHHHHHHH-HhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHH
Confidence 35677888998854 2334433322 2222456777766543 2333332 334678889999998888887
Q ss_pred HHhCCCCCCCCCChHHHHHHHHHHCCCChHHHHHH
Q 041381 195 KKVGQETLESHPDIPELAQTVAKECSGLPLALITT 229 (307)
Q Consensus 195 ~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~i 229 (307)
..+...+... -.+.+..|++.++|.+..+...
T Consensus 153 ~~~~~~g~~i---~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 153 ARAKQLNLEL---DDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHHHTTCEE---CHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHHHcCCCC---CHHHHHHHHHHhchHHHHHHHH
Confidence 7763332111 2456778888889888776653
No 57
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.33 E-value=14 Score=33.90 Aligned_cols=133 Identities=14% Similarity=0.163 Sum_probs=79.4
Q ss_pred ceeeccccHHHHHHHHhc-------------CCceEEEEEcCchh---------------------------------HH
Q 041381 86 TIIGLESTFDKVWRCLVE-------------GQFGIIGLYGMGGK---------------------------------AS 119 (307)
Q Consensus 86 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGi---------------------------------~~ 119 (307)
++.|.++.+++|.+.+.- ...+=|.++|++|. .+
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek 289 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGAR 289 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHH
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHH
Confidence 467888888887765421 13567889999998 22
Q ss_pred HHHHHh----cCCeEEEEEeCcCCHH----------------HHhhcCCCCC--CCCCCCeEEEEecCChhhhhc--c--
Q 041381 120 GIFNLL----SKMKFLLLLDDIWERI----------------DLAKVGVPFP--ASSRNASKIVFTTRLVDVCGL--M-- 173 (307)
Q Consensus 120 ~l~~~l----~~kr~LlVlDdv~~~~----------------~~~~l~~~~~--~~~~~gs~IivTtr~~~v~~~--~-- 173 (307)
.++..+ ....++|++|+++... ....+... + .....+..||.||...+.... .
T Consensus 290 ~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~-lDg~~~~~~ViVIaATNrpd~LDpALlRp 368 (467)
T 4b4t_H 290 MVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQ-LDGFDPRGNIKVMFATNRPNTLDPALLRP 368 (467)
T ss_dssp HHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHH-HHSSCCTTTEEEEEECSCTTSBCHHHHST
T ss_pred HHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHH-hhccCCCCcEEEEeCCCCcccCChhhhcc
Confidence 333332 3467999999996310 01111111 1 122345567777766543221 1
Q ss_pred -cccceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCCh
Q 041381 174 -EAQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLP 223 (307)
Q Consensus 174 -~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 223 (307)
.-...+.+...+.++-.++|+.++.......+.++ ..|++.|.|.-
T Consensus 369 GRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl----~~LA~~T~GfS 415 (467)
T 4b4t_H 369 GRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRW----ELISRLCPNST 415 (467)
T ss_dssp TTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHHCCSCC
T ss_pred ccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHHCCCCC
Confidence 23457888888999999999888765442333343 55677888764
No 58
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=79.80 E-value=3.4 Score=31.81 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=28.6
Q ss_pred CceeeccccHHHHHHHHhcCCceEEEEEcCchh
Q 041381 85 PTIIGLESTFDKVWRCLVEGQFGIIGLYGMGGK 117 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGi 117 (307)
..++||+.+++.+.+.+.......+.|+|..|+
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~ 54 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGV 54 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGG
T ss_pred chhhcchHHHHHHHHHHhCCCCCceEEECCCCC
Confidence 468999999999999998776667789999999
No 59
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.77 E-value=8.8 Score=34.94 Aligned_cols=133 Identities=14% Similarity=0.182 Sum_probs=77.1
Q ss_pred ceeeccccHHHHHHHHh----cC---------CceEEEEEcCchh---------------------------------HH
Q 041381 86 TIIGLESTFDKVWRCLV----EG---------QFGIIGLYGMGGK---------------------------------AS 119 (307)
Q Consensus 86 ~~vGr~~~~~~l~~~L~----~~---------~~~vi~I~G~gGi---------------------------------~~ 119 (307)
++.|.++.+++|.+.+. .. ..+=|.++|++|. .+
T Consensus 182 digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~ 261 (434)
T 4b4t_M 182 DVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAK 261 (434)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHH
Confidence 46788888888776543 11 3567889999999 22
Q ss_pred HHHHHh----cCCeEEEEEeCcCCH-------H---------HHhhcCCCCCC--CCCCCeEEEEecCChhhhhc--c--
Q 041381 120 GIFNLL----SKMKFLLLLDDIWER-------I---------DLAKVGVPFPA--SSRNASKIVFTTRLVDVCGL--M-- 173 (307)
Q Consensus 120 ~l~~~l----~~kr~LlVlDdv~~~-------~---------~~~~l~~~~~~--~~~~gs~IivTtr~~~v~~~--~-- 173 (307)
.++..+ ....++|.+|+++.. . ....+... +. ....+-.||.||...+.... .
T Consensus 262 ~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~-ldg~~~~~~ViVIaaTNrp~~LD~AllRp 340 (434)
T 4b4t_M 262 LVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQ-LDGFSSDDRVKVLAATNRVDVLDPALLRS 340 (434)
T ss_dssp HHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHH-HTTSCSSCSSEEEEECSSCCCCCTTTCST
T ss_pred HHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHH-hhccCCCCCEEEEEeCCCchhcCHhHhcC
Confidence 333332 235799999998521 0 01111111 11 12334566667776554321 1
Q ss_pred -cccceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCCh
Q 041381 174 -EAQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLP 223 (307)
Q Consensus 174 -~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 223 (307)
.-...+.+...+.++-.++|+.+........+-++ ..|++.+.|.-
T Consensus 341 GRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl----~~lA~~t~G~s 387 (434)
T 4b4t_M 341 GRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINW----QELARSTDEFN 387 (434)
T ss_dssp TSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCH----HHHHHHCSSCC
T ss_pred CceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCCC
Confidence 12456788888988888888877643322222333 56677887754
No 60
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.37 E-value=15 Score=33.37 Aligned_cols=133 Identities=14% Similarity=0.148 Sum_probs=77.8
Q ss_pred ceeeccccHHHHHHHHh----cC---------CceEEEEEcCchh---------------------------------HH
Q 041381 86 TIIGLESTFDKVWRCLV----EG---------QFGIIGLYGMGGK---------------------------------AS 119 (307)
Q Consensus 86 ~~vGr~~~~~~l~~~L~----~~---------~~~vi~I~G~gGi---------------------------------~~ 119 (307)
++.|.++.+++|.+.+. .. ..+=|.++|++|. .+
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek 262 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPR 262 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHH
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHH
Confidence 35677877777766543 11 3567899999999 23
Q ss_pred HHHHHh----cCCeEEEEEeCcCCH----------------HHHhhcCCCCC--CCCCCCeEEEEecCChhhhhc--cc-
Q 041381 120 GIFNLL----SKMKFLLLLDDIWER----------------IDLAKVGVPFP--ASSRNASKIVFTTRLVDVCGL--ME- 174 (307)
Q Consensus 120 ~l~~~l----~~kr~LlVlDdv~~~----------------~~~~~l~~~~~--~~~~~gs~IivTtr~~~v~~~--~~- 174 (307)
.++..+ +...++|.+|+++.. .....+... + .....+..||.||...+.... ..
T Consensus 263 ~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~-lDg~~~~~~ViVIaATNrpd~LDpALlRp 341 (437)
T 4b4t_I 263 LCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQ-LDGFDDRGDVKVIMATNKIETLDPALIRP 341 (437)
T ss_dssp HHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHH-HHHCCCSSSEEEEEEESCSTTCCTTSSCT
T ss_pred HHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHH-hhCcCCCCCEEEEEeCCChhhcCHHHhcC
Confidence 333332 346799999998631 011111111 1 022345667777766654321 11
Q ss_pred --ccceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCCh
Q 041381 175 --AQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLP 223 (307)
Q Consensus 175 --~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 223 (307)
-...+.+...+.++-.++|..+........+.++ ..|++.+.|.-
T Consensus 342 GRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl----~~LA~~T~GfS 388 (437)
T 4b4t_I 342 GRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNL----ETLVTTKDDLS 388 (437)
T ss_dssp TTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCH----HHHHHHCCSCC
T ss_pred CceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCCC
Confidence 2346788888888889999888765442333344 55667777764
No 61
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=76.06 E-value=14 Score=34.03 Aligned_cols=134 Identities=16% Similarity=0.160 Sum_probs=76.0
Q ss_pred CceeeccccHHHHHHHHh---cC---------CceEEEEEcCchh---------------------------------HH
Q 041381 85 PTIIGLESTFDKVWRCLV---EG---------QFGIIGLYGMGGK---------------------------------AS 119 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~---~~---------~~~vi~I~G~gGi---------------------------------~~ 119 (307)
.+++|.++.++++.+.+. .. -.+-+.++|..|. ..
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~ 95 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAA 95 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHH
Confidence 457898887776665432 21 1234779999988 11
Q ss_pred H----HHHHhcCCeEEEEEeCcCCH----------------HHHhhcCCCCCC--CCCCCeEEEEecCChhhhh--ccc-
Q 041381 120 G----IFNLLSKMKFLLLLDDIWER----------------IDLAKVGVPFPA--SSRNASKIVFTTRLVDVCG--LME- 174 (307)
Q Consensus 120 ~----l~~~l~~kr~LlVlDdv~~~----------------~~~~~l~~~~~~--~~~~gs~IivTtr~~~v~~--~~~- 174 (307)
. +.........+|++|++... .....+... +. ....+..||.||...+... ...
T Consensus 96 ~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~-ld~~~~~~~viVIaaTn~~~~Ld~allR~ 174 (476)
T 2ce7_A 96 RVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVE-MDGFDSKEGIIVMAATNRPDILDPALLRP 174 (476)
T ss_dssp HHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHH-HHHSCGGGTEEEEEEESCGGGSCGGGGST
T ss_pred HHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHH-HhccCCCCCEEEEEecCChhhhchhhccc
Confidence 2 22233356789999999531 112222111 10 1234567777777665432 111
Q ss_pred --ccceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCCh
Q 041381 175 --AQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLP 223 (307)
Q Consensus 175 --~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 223 (307)
-...+.+...+.++-.+++..++.........++ ..|++.+.|..
T Consensus 175 gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l----~~la~~t~G~s 221 (476)
T 2ce7_A 175 GRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNL----EIIAKRTPGFV 221 (476)
T ss_dssp TSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCH----HHHHHTCTTCC
T ss_pred CcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhH----HHHHHhcCCCc
Confidence 2336788888888888888877754332222222 44777888876
No 62
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=69.01 E-value=46 Score=27.14 Aligned_cols=68 Identities=15% Similarity=0.112 Sum_probs=37.4
Q ss_pred CCeEEEEecCChhhh-hcc-c---ccceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCC-ChHHHH
Q 041381 156 NASKIVFTTRLVDVC-GLM-E---AQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSG-LPLALI 227 (307)
Q Consensus 156 ~gs~IivTtr~~~v~-~~~-~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~G-lPLai~ 227 (307)
.+..||.||...+.. ... . -...+.+...+.++-.+++...+.......... ...++..+.| .+--+.
T Consensus 149 ~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~----~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 149 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGFSGADLA 222 (257)
T ss_dssp SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCCHHHHH
T ss_pred CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcccc----HHHHHHHcCCCCHHHHH
Confidence 345677777654321 111 1 134677888888888888877764432122222 2456667777 554443
No 63
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=62.18 E-value=53 Score=32.39 Aligned_cols=134 Identities=13% Similarity=0.108 Sum_probs=78.0
Q ss_pred ceeeccccHHHHHHHHh----cC---------CceEEEEEcCchh---------------------------------HH
Q 041381 86 TIIGLESTFDKVWRCLV----EG---------QFGIIGLYGMGGK---------------------------------AS 119 (307)
Q Consensus 86 ~~vGr~~~~~~l~~~L~----~~---------~~~vi~I~G~gGi---------------------------------~~ 119 (307)
++.|.++.+++|.+.+. .. ..+-|.++|.+|. .+
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~ 284 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESES 284 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHH
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHH
Confidence 46788888888877653 11 2567889999998 22
Q ss_pred HHHHH----hcCCeEEEEEeCcCCHH-------------HHhhcCCCCCC--CCCCCeEEEEecCChhhh-hcc----cc
Q 041381 120 GIFNL----LSKMKFLLLLDDIWERI-------------DLAKVGVPFPA--SSRNASKIVFTTRLVDVC-GLM----EA 175 (307)
Q Consensus 120 ~l~~~----l~~kr~LlVlDdv~~~~-------------~~~~l~~~~~~--~~~~gs~IivTtr~~~v~-~~~----~~ 175 (307)
.+++. .+...++|++|+++... ....+... +. ....+..||.||...+.. ..+ .-
T Consensus 285 ~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~-mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRF 363 (806)
T 3cf2_A 285 NLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTL-MDGLKQRAHVIVMAATNRPNSIDPALRRFGRF 363 (806)
T ss_dssp HHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTH-HHHCCGGGCEEEEEECSSTTTSCTTTTSTTSS
T ss_pred HHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHH-HhcccccCCEEEEEecCChhhcCHHHhCCccc
Confidence 33333 34567999999996310 01111111 10 112344566666654332 111 12
Q ss_pred cceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCChH
Q 041381 176 QKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLPL 224 (307)
Q Consensus 176 ~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPL 224 (307)
...+.+...+.++-.++|..+........+.++ ..|++++.|.--
T Consensus 364 d~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl----~~lA~~T~Gfsg 408 (806)
T 3cf2_A 364 DREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHVG 408 (806)
T ss_dssp CEEEECCCCCHHHHHHHHHHTCSSSEECTTCCH----HHHHHHCCSCCH
T ss_pred ceEEecCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhcCCCCH
Confidence 456888888999999999887754432333333 456777877643
No 64
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.98 E-value=44 Score=30.21 Aligned_cols=133 Identities=13% Similarity=0.210 Sum_probs=72.9
Q ss_pred ceeeccccHHHHHHHHhc-----------C--CceEEEEEcCchh---------------------------------HH
Q 041381 86 TIIGLESTFDKVWRCLVE-----------G--QFGIIGLYGMGGK---------------------------------AS 119 (307)
Q Consensus 86 ~~vGr~~~~~~l~~~L~~-----------~--~~~vi~I~G~gGi---------------------------------~~ 119 (307)
++.|.++.+++|.+.+.- + ..+=|.++|++|. ..
T Consensus 173 digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~ 252 (428)
T 4b4t_K 173 DVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPR 252 (428)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHH
Confidence 567888888887775531 1 3456889999999 23
Q ss_pred HHHHHh----cCCeEEEEEeCcCCHH----------------HHhhcCCCCCC--CCCCCeEEEEecCChhhhh--ccc-
Q 041381 120 GIFNLL----SKMKFLLLLDDIWERI----------------DLAKVGVPFPA--SSRNASKIVFTTRLVDVCG--LME- 174 (307)
Q Consensus 120 ~l~~~l----~~kr~LlVlDdv~~~~----------------~~~~l~~~~~~--~~~~gs~IivTtr~~~v~~--~~~- 174 (307)
.+++.+ ....+++.+|+++... ....+... +. ....+..||.||...+... ...
T Consensus 253 ~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~-ldg~~~~~~v~vI~aTN~~~~LD~AllRp 331 (428)
T 4b4t_K 253 MVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQ-MDGFDQSTNVKVIMATNRADTLDPALLRP 331 (428)
T ss_dssp HHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHH-HHHSCSSCSEEEEEEESCSSSCCHHHHSS
T ss_pred HHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHH-hhCCCCCCCEEEEEecCChhhcChhhhcC
Confidence 333333 3467999999985210 11111111 10 1234566777886654321 111
Q ss_pred --ccceeecCCC-CHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCCh
Q 041381 175 --AQKTFKVECF-ADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLP 223 (307)
Q Consensus 175 --~~~~~~l~~L-~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 223 (307)
-...+.+..+ +.++-..+|..+........+.++ ..|++.+.|.-
T Consensus 332 GRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl----~~lA~~t~G~s 379 (428)
T 4b4t_K 332 GRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADL----DSLIIRNDSLS 379 (428)
T ss_dssp SSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCH----HHHHHHTTTCC
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHHCCCCC
Confidence 2335667545 555566677766643332223333 56677777754
No 65
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=59.92 E-value=4.5 Score=19.60 Aligned_cols=10 Identities=30% Similarity=0.793 Sum_probs=8.3
Q ss_pred HHHHHHHHHH
Q 041381 2 VQGWLSRVEA 11 (307)
Q Consensus 2 v~~Wl~~lr~ 11 (307)
|+.|++++|-
T Consensus 10 V~rWmeDLr~ 19 (22)
T 3ro3_B 10 VQRWMEDLKL 19 (26)
T ss_pred HHHHHHHHHh
Confidence 7899999874
No 66
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=56.12 E-value=79 Score=31.10 Aligned_cols=131 Identities=14% Similarity=0.119 Sum_probs=72.4
Q ss_pred ceeeccccHHHHHHHHhc-------------CCceEEEEEcCchh---------------------------------HH
Q 041381 86 TIIGLESTFDKVWRCLVE-------------GQFGIIGLYGMGGK---------------------------------AS 119 (307)
Q Consensus 86 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGi---------------------------------~~ 119 (307)
+++|.+..+++|.+++.. .....+.|+|..|. ..
T Consensus 205 di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~ 284 (806)
T 1ypw_A 205 DVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESES 284 (806)
T ss_dssp GCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHH
T ss_pred HhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHH
Confidence 588999999998887752 13457899999998 11
Q ss_pred HHH----HHhcCCeEEEEEeCcCCH----------------HHHhhcCCCCCCCCCCCeEEEEecCChhhh-hcc----c
Q 041381 120 GIF----NLLSKMKFLLLLDDIWER----------------IDLAKVGVPFPASSRNASKIVFTTRLVDVC-GLM----E 174 (307)
Q Consensus 120 ~l~----~~l~~kr~LlVlDdv~~~----------------~~~~~l~~~~~~~~~~gs~IivTtr~~~v~-~~~----~ 174 (307)
.+. ........++++|++... ..+..+... +. ...+..+|.||....-. ..+ .
T Consensus 285 ~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g-~~-~~~~v~vI~atn~~~~ld~al~r~gR 362 (806)
T 1ypw_A 285 NLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDG-LK-QRAHVIVMAATNRPNSIDPALRRFGR 362 (806)
T ss_dssp HHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHS-SC-TTSCCEEEEECSCTTTSCTTTTSTTS
T ss_pred HHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhh-hc-ccccEEEecccCCchhcCHHHhcccc
Confidence 122 222335689999999421 111111111 11 12344566666554221 111 1
Q ss_pred ccceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCC
Q 041381 175 AQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGL 222 (307)
Q Consensus 175 ~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~Gl 222 (307)
-...+.+...+.++-.+++...+..........+ ..++..+.|.
T Consensus 363 f~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l----~~la~~t~g~ 406 (806)
T 1ypw_A 363 FDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGH 406 (806)
T ss_dssp SCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCT----HHHHHSCSSC
T ss_pred cccccccCCCCHHHHHHHHHHHHhcCCCcccchh----HHHHHhhcCc
Confidence 1245678888899988999877654332222233 3344455554
No 67
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=55.62 E-value=13 Score=36.39 Aligned_cols=113 Identities=13% Similarity=0.108 Sum_probs=62.8
Q ss_pred CceeeccccHHHHHHHHhcC---------CceEEEEEcCchh-----HHHHHHHh-------------------------
Q 041381 85 PTIIGLESTFDKVWRCLVEG---------QFGIIGLYGMGGK-----ASGIFNLL------------------------- 125 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGi-----~~~l~~~l------------------------- 125 (307)
..++|.+..++.+...+... ....+.++|..|+ ++.+.+.+
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~~ 570 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQ 570 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccch
Confidence 46899999888888877632 1236899999999 33333322
Q ss_pred -----c-CCeEEEEEeCcCCH--HHHhhcCCC----CCCC------CCCCeEEEEecCCh-----hh----hhcc-----
Q 041381 126 -----S-KMKFLLLLDDIWER--IDLAKVGVP----FPAS------SRNASKIVFTTRLV-----DV----CGLM----- 173 (307)
Q Consensus 126 -----~-~kr~LlVlDdv~~~--~~~~~l~~~----~~~~------~~~gs~IivTtr~~-----~v----~~~~----- 173 (307)
+ ....+|+||++... .....+... .+.. ...+..||+||... .+ ...+
T Consensus 571 l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~ 650 (758)
T 3pxi_A 571 LTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFI 650 (758)
T ss_dssp CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHH
T ss_pred hhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHH
Confidence 1 12247899999752 211111100 0111 12356888888731 11 0111
Q ss_pred -cccceeecCCCCHHhHHHHHHHHh
Q 041381 174 -EAQKTFKVECFADQDAWELFLKKV 197 (307)
Q Consensus 174 -~~~~~~~l~~L~~~e~~~Lf~~~~ 197 (307)
.-...+.+.+++.++-..++...+
T Consensus 651 ~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 651 NRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp TTSSEEEECC--CHHHHHHHHHHHH
T ss_pred hhCCeEEecCCCCHHHHHHHHHHHH
Confidence 112478889999988888776654
No 68
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=55.20 E-value=25 Score=29.98 Aligned_cols=33 Identities=12% Similarity=0.191 Sum_probs=23.4
Q ss_pred CceeeccccHHHHHHHHhc--CCceEEEEEcCchh
Q 041381 85 PTIIGLESTFDKVWRCLVE--GQFGIIGLYGMGGK 117 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGi 117 (307)
..++|++..+.++.+.+.. ....-|.|+|..|+
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~Gt 36 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGT 36 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCc
Confidence 3578998888888877654 23345668898888
No 69
>2cxn_A Glucose-6-phosphate isomerase; 1.40A {Mus musculus} PDB: 2cvp_A 2cxo_A* 2cxp_A* 2cxq_A* 2cxr_A* 2cxs_A* 2cxt_A* 2cxu_A 1u0e_A 1u0f_A* 1u0g_A* 1jiq_A 1iri_A 1nuh_A* 1jlh_A 1iat_A 1hm5_A 1g98_A 1hox_A* 1xtb_A* ...
Probab=53.24 E-value=57 Score=30.61 Aligned_cols=56 Identities=18% Similarity=0.184 Sum_probs=33.2
Q ss_pred ceEEEEEcCchh---HHHHHHHhcC-----CeEEEEEeCcCCHHHHhhcCCCCCCCCCCCeEEEEecCC
Q 041381 106 FGIIGLYGMGGK---ASGIFNLLSK-----MKFLLLLDDIWERIDLAKVGVPFPASSRNASKIVFTTRL 166 (307)
Q Consensus 106 ~~vi~I~G~gGi---~~~l~~~l~~-----kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IivTtr~ 166 (307)
...|.++|+||. ...+.+.|+. .++.++ ||++ ...+..+... + ....+-+||.|.+
T Consensus 149 i~~VV~IGIGGS~LGp~~v~~aL~~~~~~~~~v~fv-sNvD-p~~i~~~l~~-L--~~e~TLvIViSKS 212 (557)
T 2cxn_A 149 ITDIINIGIGGSDLGPLMVTEALKPYSKGGPRVWFV-SNID-GTHIAKTLAS-L--SPETSLFIIASKT 212 (557)
T ss_dssp CCEEEEECCGGGTHHHHHHHHHTGGGGTTSCEEEEE-CCSS-HHHHHHHHTT-C--CTTTEEEEEECSS
T ss_pred cceEEEEeccchHHHHHHHHHHHhhhccCCCeEEEE-ecCC-HHHHHHHHhc-C--CCCcEEEEEEcCC
Confidence 789999999999 5666666642 344444 9984 3333333222 2 1334556666654
No 70
>3ljk_A Glucose-6-phosphate isomerase; structural genomics, IDP02733, cytoplasm, gluconeogenesis, glycolysis; HET: MSE MES; 1.48A {Francisella tularensis} PDB: 3m5p_A* 3q7i_A* 3q88_A*
Probab=53.03 E-value=47 Score=31.01 Aligned_cols=57 Identities=11% Similarity=0.088 Sum_probs=34.7
Q ss_pred ceEEEEEcCchh---HHHHHHHhcC----CeEEEEEeCcCCHHHHhhcCCCCCCCCCCCeEEEEecCC
Q 041381 106 FGIIGLYGMGGK---ASGIFNLLSK----MKFLLLLDDIWERIDLAKVGVPFPASSRNASKIVFTTRL 166 (307)
Q Consensus 106 ~~vi~I~G~gGi---~~~l~~~l~~----kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IivTtr~ 166 (307)
...|.++|+||. .+.+.+.|+. ..-+.++||++. .....+... +. ...+-+||.|.+
T Consensus 140 i~~VV~IGIGGS~LGp~~v~eaL~~~~~~~~~~~Fv~NvDp-~~l~~~L~~-l~--~~~TLfiViSKS 203 (543)
T 3ljk_A 140 ITDIVNIGIGGSDLGPKMVVRALQPYHCTDLKVHFVSNVDA-DSLLQALHV-VD--PETTLLIIASKS 203 (543)
T ss_dssp CCEEEEECCGGGTHHHHHHHHHTGGGCCSSCEEEEECCSSH-HHHHHHHTT-CC--GGGEEEEEECTT
T ss_pred eeeEEEEecccchHHHHHHHHHhhhhccCCCeEEEEeCCCH-HHHHHHHhh-CC--cccEEEEEecCC
Confidence 678999999999 6777777742 344556699853 333333222 21 234566666654
No 71
>4em6_D Glucose-6-phosphate isomerase; GPI, phosphoglucose isomerase phosphohexose isomerase, PHI, ssgcid; 1.90A {Brucella melitensis BV}
Probab=50.54 E-value=48 Score=31.03 Aligned_cols=57 Identities=16% Similarity=0.119 Sum_probs=34.1
Q ss_pred ceEEEEEcCchh---HHHHHHHhcC---CeEEEEEeCcCCHHHHhhcCCCCCCCCCCCeEEEEecCC
Q 041381 106 FGIIGLYGMGGK---ASGIFNLLSK---MKFLLLLDDIWERIDLAKVGVPFPASSRNASKIVFTTRL 166 (307)
Q Consensus 106 ~~vi~I~G~gGi---~~~l~~~l~~---kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IivTtr~ 166 (307)
...|.++|+||. .+.+.+.|+. ..-+.++||++. .....+... + ....+-+||.|.+
T Consensus 150 i~~vV~IGIGGS~LGp~~v~eAL~~~~~~~~~~Fv~NvDp-~~l~~~L~~-l--~~~~TLfiViSKS 212 (553)
T 4em6_D 150 ITDIVNIGIGGSDLGPVMATLALAPYHDEPRAHFVSNIDG-AHIADTLSP-L--DPASTLIIVASKT 212 (553)
T ss_dssp CCEEEEECCGGGTHHHHHHHHHTGGGCCSSEEEEECCSSH-HHHHHHHTT-S--CGGGEEEEEECSS
T ss_pred eeeEEEEecccccHHHHHHHHHHhccCCCCeEEEEeCCCH-HHHHHHHhh-C--CcCcEEEEEEeCC
Confidence 688999999999 6667776652 234555699854 333333222 2 1234556666654
No 72
>3hjb_A Glucose-6-phosphate isomerase; PGI, IDP01329, gluconeogenesi glycolysis, structural genomics, center for STRU genomics of infectious diseases; HET: PG4; 1.50A {Vibrio cholerae} PDB: 3nbu_A
Probab=50.01 E-value=50 Score=31.04 Aligned_cols=57 Identities=9% Similarity=0.084 Sum_probs=34.2
Q ss_pred ceEEEEEcCchh---HHHHHHHhcC---CeEEEEEeCcCCHHHHhhcCCCCCCCCCCCeEEEEecCC
Q 041381 106 FGIIGLYGMGGK---ASGIFNLLSK---MKFLLLLDDIWERIDLAKVGVPFPASSRNASKIVFTTRL 166 (307)
Q Consensus 106 ~~vi~I~G~gGi---~~~l~~~l~~---kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IivTtr~ 166 (307)
+..|.++|+||. .+.+.+.|+. ..-+.++||++. .....+... +. ...+-+||.|.+
T Consensus 172 i~~VV~IGIGGS~LGp~~v~eAL~~~~~~~~l~FvsNvDp-~~l~~~L~~-Ld--~~~TLfiViSKS 234 (574)
T 3hjb_A 172 ITDVVNIGIGGSDLGPYMVTEALVPYKNHLTVHFVSNVDG-THMAETLKN-VD--PETTLFLVASKT 234 (574)
T ss_dssp CCEEEEECCGGGTHHHHHHHHHTGGGCCSCEEEEECCSSH-HHHHHHHTT-CC--GGGEEEEEECSS
T ss_pred CCeEEEEecccchHHHHHHHHHhhcccCCCeEEEEeCCCH-HHHHHHHhc-CC--cccEEEEEeCCC
Confidence 678999999999 6777777753 234555699854 333333222 21 234556666554
No 73
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=48.86 E-value=11 Score=31.87 Aligned_cols=32 Identities=16% Similarity=0.300 Sum_probs=21.6
Q ss_pred ceeeccccHHHHHHHHhcC---------CceEEEEEcCchh
Q 041381 86 TIIGLESTFDKVWRCLVEG---------QFGIIGLYGMGGK 117 (307)
Q Consensus 86 ~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGi 117 (307)
.++|.+..++.+...+... ....+.++|..|+
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~Gt 58 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGV 58 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSS
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCc
Confidence 4677777777777666542 1346788888887
No 74
>3ujh_A Glucose-6-phosphate isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: G6Q; 2.10A {Toxoplasma gondii}
Probab=46.69 E-value=55 Score=30.73 Aligned_cols=57 Identities=12% Similarity=0.093 Sum_probs=32.5
Q ss_pred ceEEEEEcCchh---HHHHHHHhcC---------CeEEEEEeCcCCHHHHhhcCCCCCCCCCCCeEEEEecCC
Q 041381 106 FGIIGLYGMGGK---ASGIFNLLSK---------MKFLLLLDDIWERIDLAKVGVPFPASSRNASKIVFTTRL 166 (307)
Q Consensus 106 ~~vi~I~G~gGi---~~~l~~~l~~---------kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IivTtr~ 166 (307)
...|.++|+||. .+.+.+.|+. ..-+.++||++.. ....+... + ....+-+||.|.+
T Consensus 151 i~~vV~IGIGGS~LGp~~v~eAL~~~~~~~~~~~~~~~~FvsNvDp~-~l~~~L~~-L--~~~~TlfiViSKS 219 (567)
T 3ujh_A 151 LVNVISIGIGGSYLGTEFVHLALAAEGYAAEKAHGRQIHFLANVDPV-DVWLAERG-F--DPEETLVVVISKT 219 (567)
T ss_dssp CCEEEEECCGGGTHHHHHHHHHHHTCHHHHHHTTTCEEEEECCSSHH-HHHHHHTT-C--CGGGEEEEEECSS
T ss_pred ceeEEEEecccchHHHHHHHHHhccccccccccCCCeEEEEeCCCHH-HHHHHHhh-C--CcccEEEEEEeCC
Confidence 688999999999 5555555532 2345556998543 33333222 2 1234556666554
No 75
>1b0z_A Protein (phosphoglucose isomerase); autocrinefactor, neuroleukin, crystallography motility; 2.30A {Geobacillus stearothermophilus} SCOP: c.80.1.2 PDB: 1c7q_A* 1c7r_A* 2pgi_A
Probab=46.18 E-value=27 Score=31.86 Aligned_cols=58 Identities=14% Similarity=0.146 Sum_probs=34.7
Q ss_pred CceEEEEEcCchh---HHHHHHHhcC---------CeEEEEEeCcCCHHHHhhcCCCCCCCCCCCeEEEEecCC
Q 041381 105 QFGIIGLYGMGGK---ASGIFNLLSK---------MKFLLLLDDIWERIDLAKVGVPFPASSRNASKIVFTTRL 166 (307)
Q Consensus 105 ~~~vi~I~G~gGi---~~~l~~~l~~---------kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IivTtr~ 166 (307)
....|.++|+||. ...+.+.|+. .+.+.|+||++. ..+..+... + ....+-+||.|.+
T Consensus 71 ~~~~VV~IGIGGS~LG~~~v~~aL~~~~~~~~~~~~~~~fv~~NvDp-~~i~~~l~~-l--~~~~TlviviSKS 140 (445)
T 1b0z_A 71 HSDALVVIGIGGSYLGARAAIEALSHTFHNQMNDTTQIYFAGQNISS-TYISHLLDV-L--EGKDLSINVISKS 140 (445)
T ss_dssp HCSEEEEECCGGGTHHHHHHHHHHSCTTGGGSTTSCEEEEESSSCCH-HHHHHHHHH-H--TTCCEEEEEECSS
T ss_pred cCCEEEEEecChhHHHHHHHHHHHhhhcccccccCCceEEEeCCCCH-HHHHHHHhh-C--CcCcEEEEEEeCC
Confidence 4678899999999 5666666643 356777799953 222222111 1 1234666776655
No 76
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=42.44 E-value=24 Score=28.20 Aligned_cols=46 Identities=11% Similarity=0.083 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCeE-EEEEeCcCC--------HHHHhhcCCCCCCCCCCCeEEEEecCCh
Q 041381 118 ASGIFNLLSKMKF-LLLLDDIWE--------RIDLAKVGVPFPASSRNASKIVFTTRLV 167 (307)
Q Consensus 118 ~~~l~~~l~~kr~-LlVlDdv~~--------~~~~~~l~~~~~~~~~~gs~IivTtr~~ 167 (307)
.+..++.+.+.+| |||||++-. .++...+. ........||+|+|+.
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l----~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISAL----NARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHH----HTSCTTCEEEEECSSC
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHH----HhCcCCCEEEEECCCC
Confidence 4455666655554 999999843 22222221 1223456799999986
No 77
>2wu8_A Glucose-6-phosphate isomerase; gluconeogenesis, 5-phosphoarabinonate (PAB), PGI, cytoplasm, glycolysis; 2.25A {Mycobacterium tuberculosis}
Probab=42.38 E-value=45 Score=31.25 Aligned_cols=58 Identities=10% Similarity=0.156 Sum_probs=33.7
Q ss_pred CceEEEEEcCchh---HHHHHHHhcC----CeEEEEEeCcCCHHHHhhcCCCCCCCCCCCeEEEEecCC
Q 041381 105 QFGIIGLYGMGGK---ASGIFNLLSK----MKFLLLLDDIWERIDLAKVGVPFPASSRNASKIVFTTRL 166 (307)
Q Consensus 105 ~~~vi~I~G~gGi---~~~l~~~l~~----kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IivTtr~ 166 (307)
....|.++|+||. ...+.+.|+. +.-+.++||++ ..++..+... + ....+-+||.|.+
T Consensus 142 ~i~~VV~IGIGGS~LGp~~v~~aL~~~~~~~~~v~fvsNvD-p~~~~~~l~~-l--~~e~TLvIViSKS 206 (549)
T 2wu8_A 142 RISTVVNIGIGGSDLGPVMVYQALRHYADAGISARFVSNVD-PADLIATLAD-L--DPATTLFIVASKT 206 (549)
T ss_dssp BCCEEEEECCGGGTHHHHHHHHHTGGGCCSSCEEEEECCSS-HHHHHHHHTT-C--CGGGEEEEEECSS
T ss_pred ccceEEEEeccchHHHHHHHHHHHHhhccCCCeEEEEccCC-HHHHHHHHhc-C--CCCcEEEEEEeCC
Confidence 4789999999999 6666666643 22345559984 3333333222 1 1234555555544
No 78
>1t10_A GPI, glucose-6-phosphate isomerase, PGI, phosphohexose; phosphoglucose isomerase, substrate, D-fructose-6-phosphate; HET: F6P; 2.35A {Leishmania mexicana mexicana} SCOP: c.80.1.2
Probab=41.52 E-value=1e+02 Score=29.15 Aligned_cols=57 Identities=12% Similarity=0.130 Sum_probs=35.8
Q ss_pred ceEEEEEcCchh---HHHHHHHhcC----CeEEEEEeCcCCHHHHhhcCCCCCCCCCCCeEEEEecCC
Q 041381 106 FGIIGLYGMGGK---ASGIFNLLSK----MKFLLLLDDIWERIDLAKVGVPFPASSRNASKIVFTTRL 166 (307)
Q Consensus 106 ~~vi~I~G~gGi---~~~l~~~l~~----kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IivTtr~ 166 (307)
...|.++|+||. ...+.+.|+. +.-+.++||++.. ++..+... + ....+-+||.|.+
T Consensus 196 i~~VV~IGIGGS~LGp~~v~~aL~~~~~~~~~v~fvsNvDp~-~i~~~l~~-l--~~e~TLfIViSKS 259 (605)
T 1t10_A 196 IYNIVNIGIGGSDLGPVMVTEALKPFSKRDLHCFFVSNVDGT-HMAEVLKQ-V--NLEETIFIIASKT 259 (605)
T ss_dssp CCEEEEECCGGGTHHHHHHHHHTGGGSCSSSEEEEECCSSTH-HHHHHHTT-S--CGGGEEEEEECSS
T ss_pred cceEEEEeccchHHHHHHHHHHhhhhccCCCeEEEEecCCHH-HHHHHHhc-C--CCCcEEEEEEeCC
Confidence 789999999999 6666666643 2335555999554 33333222 2 2346778888765
No 79
>2o2c_A GPI, glucose-6-phosphate isomerase, glycosomal, PGI, phosphohexose; dimer; HET: G6Q; 1.58A {Trypanosoma brucei brucei} PDB: 2o2d_A* 1q50_A
Probab=39.99 E-value=58 Score=30.91 Aligned_cols=57 Identities=14% Similarity=0.119 Sum_probs=35.1
Q ss_pred ceEEEEEcCchh---HHHHHHHhcC----CeEEEEEeCcCCHHHHhhcCCCCCCCCCCCeEEEEecCC
Q 041381 106 FGIIGLYGMGGK---ASGIFNLLSK----MKFLLLLDDIWERIDLAKVGVPFPASSRNASKIVFTTRL 166 (307)
Q Consensus 106 ~~vi~I~G~gGi---~~~l~~~l~~----kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IivTtr~ 166 (307)
...|.++|+||. ...+.+.|+. ..-+.++||++. .++..+... + ....+-+||.|.+
T Consensus 197 i~~VV~IGIGGS~LGp~~v~eaL~~~~~~~~~v~fvsNvDp-~~i~~~l~~-l--~~e~TLfIViSKS 260 (613)
T 2o2c_A 197 IRHVVNIGIGGSDLGPVMATEALKPFSQRDLSLHFVSNVDG-THIAEVLKS-I--DIEATLFIVASKT 260 (613)
T ss_dssp CCEEEEECCGGGTHHHHHHHHHTGGGSCTTSEEEEECCSSH-HHHHHHHHH-C--CGGGEEEEEECSS
T ss_pred eeeEEEEeccchHHHHHHHHHHhhhhccCCceEEEEccCCH-HHHHHHHhc-C--CCCCEEEEEEeCC
Confidence 789999999999 6666666643 233555599944 333333222 1 2345778888765
No 80
>3ff1_A Glucose-6-phosphate isomerase; alpha beta, rossmann fold, gluconeogenesis, glycolysis, structural genomics; HET: G6Q; 1.65A {Staphylococcus aureus subsp} SCOP: c.80.1.2 PDB: 3ifs_A*
Probab=37.43 E-value=37 Score=30.94 Aligned_cols=34 Identities=15% Similarity=0.383 Sum_probs=25.1
Q ss_pred ceEEEEEcCchh---HHHHHHHhcC--------CeEEEEEeCcCC
Q 041381 106 FGIIGLYGMGGK---ASGIFNLLSK--------MKFLLLLDDIWE 139 (307)
Q Consensus 106 ~~vi~I~G~gGi---~~~l~~~l~~--------kr~LlVlDdv~~ 139 (307)
...|.++|+||. .+.+.+.|+. .++..|.||++.
T Consensus 76 ~~~vV~IGIGGS~LGp~~v~eaL~~~~~~~~~~~~~~fv~dnvDp 120 (446)
T 3ff1_A 76 SDVLVVIGIGGSYLGARAAIEMLTSSFRNSNEYPEIVFVGNHLSS 120 (446)
T ss_dssp CSEEEEECCGGGTHHHHHHHHHHSCSSCCCCSSCEEEEESSSCCH
T ss_pred CCEEEEEecchhHHHHHHHHHHHcchhhcccCCceEEEEecCCCH
Confidence 467889999999 6777777754 245667789954
No 81
>3qki_A Glucose-6-phosphate isomerase; structural genomics, structural genomics consortium, SGC; 1.92A {Plasmodium falciparum} PDB: 3pr3_A
Probab=37.42 E-value=52 Score=31.11 Aligned_cols=12 Identities=33% Similarity=0.609 Sum_probs=11.1
Q ss_pred ceEEEEEcCchh
Q 041381 106 FGIIGLYGMGGK 117 (307)
Q Consensus 106 ~~vi~I~G~gGi 117 (307)
...|.++|+||.
T Consensus 166 ~~~vV~IGIGGS 177 (597)
T 3qki_A 166 FKNVICIGIGGS 177 (597)
T ss_dssp CCEEEEECCGGG
T ss_pred ceeEEEEecccc
Confidence 689999999999
No 82
>1zzg_A Glucose-6-phosphate isomerase; structural genomics, riken structural genomics/PR initiative, RSGI, NPPSFA; 1.95A {Thermus thermophilus}
Probab=35.52 E-value=61 Score=29.14 Aligned_cols=46 Identities=13% Similarity=0.128 Sum_probs=30.9
Q ss_pred ccHHHHHHHHhcCCceEEEEEcCchh---HHHHHHHhcC-CeEEEEEeCcCC
Q 041381 92 STFDKVWRCLVEGQFGIIGLYGMGGK---ASGIFNLLSK-MKFLLLLDDIWE 139 (307)
Q Consensus 92 ~~~~~l~~~L~~~~~~vi~I~G~gGi---~~~l~~~l~~-kr~LlVlDdv~~ 139 (307)
++++++.+. ..+...|.++|+||. ...+.+.|+. ..-+.++||+..
T Consensus 54 ~~i~~i~~~--~~~~~~Vv~iGIGGS~LG~~~~~~aL~~~~~~~~~~~n~dp 103 (415)
T 1zzg_A 54 REVRRYREA--NPWVEDFVLIGIGGSALGPKALEAAFNESGVRFHYLDHVEP 103 (415)
T ss_dssp HHHHHHHHT--CTTCSEEEEECCGGGTHHHHHHHHHHCCSCCEEEEECSCCH
T ss_pred HHHHHHHHH--hcCCCEEEEEccCccHHHHHHHHHHHhcCCCceEEecCCCH
Confidence 355666665 225788999999999 6667777752 334556788743
No 83
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=35.32 E-value=34 Score=29.40 Aligned_cols=30 Identities=20% Similarity=0.363 Sum_probs=21.4
Q ss_pred CCceEEEEEcCchh-----HHHHHHHh--cCCeEEEE
Q 041381 104 GQFGIIGLYGMGGK-----ASGIFNLL--SKMKFLLL 133 (307)
Q Consensus 104 ~~~~vi~I~G~gGi-----~~~l~~~l--~~kr~LlV 133 (307)
++.+||+|.|-||+ .-.|-..| .|+|+|+|
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllI 82 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 82 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEE
Confidence 36899999999999 33344443 47888777
No 84
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=34.64 E-value=23 Score=17.86 Aligned_cols=17 Identities=35% Similarity=0.542 Sum_probs=14.1
Q ss_pred CCChHHHHHHHHHHcCC
Q 041381 220 SGLPLALITTSRAMSSK 236 (307)
Q Consensus 220 ~GlPLai~~ig~~L~~~ 236 (307)
.-+|||..++++.+..+
T Consensus 9 rklplavav~agv~~aq 25 (28)
T 2vda_B 9 RKLPLAVAVAAGVMSAQ 25 (28)
T ss_dssp CCCTHHHHHHHHTTCCC
T ss_pred ccCchHHHHHHHHhHhh
Confidence 46899999999988763
No 85
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=34.44 E-value=1.1e+02 Score=28.52 Aligned_cols=41 Identities=7% Similarity=0.163 Sum_probs=25.5
Q ss_pred CeEEEEecCChhhhh--cccccceeecCCCCHHhHHHHHHHHh
Q 041381 157 ASKIVFTTRLVDVCG--LMEAQKTFKVECFADQDAWELFLKKV 197 (307)
Q Consensus 157 gs~IivTtr~~~v~~--~~~~~~~~~l~~L~~~e~~~Lf~~~~ 197 (307)
+..+|.||....... ...-...+.+.+++.++-..++..++
T Consensus 224 ~v~iI~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 224 KVLFIATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp SCEEEEECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred ceEEEeccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 456777766543211 11112467899999999888887754
No 86
>2q8n_A Glucose-6-phosphate isomerase; TM1385, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: 2PE; 1.82A {Thermotoga maritima MSB8}
Probab=31.74 E-value=1e+02 Score=28.04 Aligned_cols=44 Identities=14% Similarity=0.323 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCceEEEEEcCchh---HHHHHHHhcC-------------CeEEEEEeCcCC
Q 041381 94 FDKVWRCLVEGQFGIIGLYGMGGK---ASGIFNLLSK-------------MKFLLLLDDIWE 139 (307)
Q Consensus 94 ~~~l~~~L~~~~~~vi~I~G~gGi---~~~l~~~l~~-------------kr~LlVlDdv~~ 139 (307)
++++.+.+. +...|.++|+||. ...+.+.|.. +.-+.++||+..
T Consensus 68 i~~~a~~i~--~~~~Vv~IGIGGS~LG~~~~~~aL~~~~~~~~~~~~~~~~~~v~~~~nvdp 127 (460)
T 2q8n_A 68 VKSLEDWII--NFDTVVVLGIGGSGLGNLALHYSLRPLNWNEMTREERNGYARVFVVDNVDP 127 (460)
T ss_dssp HHTTHHHHT--TCSEEEEECCGGGTHHHHHHHHHHSCTTGGGSCTTTTTTCCEEEEECSCCH
T ss_pred HHHHHHHhc--CCCEEEEEecCchHHHHHHHHHHHHhhhhcccccccccCCcceEEecCCCH
Confidence 333444443 5788999999999 6666666652 334667798743
No 87
>2gkw_B Tumor necrosis factor receptor superfamily member; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens}
Probab=31.41 E-value=32 Score=17.26 Aligned_cols=18 Identities=17% Similarity=0.134 Sum_probs=14.4
Q ss_pred CCCCCCCeEEEEecCChh
Q 041381 151 PASSRNASKIVFTTRLVD 168 (307)
Q Consensus 151 ~~~~~~gs~IivTtr~~~ 168 (307)
+|....|+.++|||...+
T Consensus 4 lPa~eeGaT~lVtTKT~d 21 (26)
T 2gkw_B 4 VPATELGSTELVTTKTAG 21 (26)
T ss_pred ccccccCceEEEEeccCC
Confidence 677788999999997543
No 88
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=23.45 E-value=4.3e+02 Score=24.15 Aligned_cols=134 Identities=14% Similarity=0.144 Sum_probs=74.0
Q ss_pred CceeeccccHHHHHHHHh---cC------C---ceEEEEEcCchh---------------------------------HH
Q 041381 85 PTIIGLESTFDKVWRCLV---EG------Q---FGIIGLYGMGGK---------------------------------AS 119 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~L~---~~------~---~~vi~I~G~gGi---------------------------------~~ 119 (307)
.+++|.++.+.++.+... .. + .+-+.|+|..|. ..
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~ 110 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAA 110 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHH
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHH
Confidence 468899887776665432 21 1 223889999998 23
Q ss_pred HHHHHhcC----CeEEEEEeCcCCH------------H----HHhhcCCCCCC--CCCCCeEEEEecCChhhhhc--c--
Q 041381 120 GIFNLLSK----MKFLLLLDDIWER------------I----DLAKVGVPFPA--SSRNASKIVFTTRLVDVCGL--M-- 173 (307)
Q Consensus 120 ~l~~~l~~----kr~LlVlDdv~~~------------~----~~~~l~~~~~~--~~~~gs~IivTtr~~~v~~~--~-- 173 (307)
.++..++. ...++++|++... . ....+... +. ....+..++.||...++... .
T Consensus 111 ~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~-Ldg~~~~~~viviAatn~p~~LD~aLlr~ 189 (499)
T 2dhr_A 111 RVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVE-MDGFEKDTAIVVMAATNRPDILDPALLRP 189 (499)
T ss_dssp HHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHH-GGGCCSSCCCEEEECCSCGGGSCTTTSST
T ss_pred HHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHH-hcccccCccEEEEEecCChhhcCcccccc
Confidence 34444443 2379999999421 0 11222111 11 11233456666666654321 1
Q ss_pred -cccceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHCCCCh
Q 041381 174 -EAQKTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKECSGLP 223 (307)
Q Consensus 174 -~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 223 (307)
.-...+.++..+.++-.+++..++.......... ...|+..+.|..
T Consensus 190 gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 190 GRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp TSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSST----THHHHTTSCSCC
T ss_pred cccceEEecCCCCHHHHHHHHHHHHhcCCCChHHH----HHHHHHhcCCCC
Confidence 1234678888898888888887664322111212 345677777765
No 89
>3sf4_D Protein inscuteable homolog; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=23.11 E-value=28 Score=20.68 Aligned_cols=9 Identities=33% Similarity=0.925 Sum_probs=4.3
Q ss_pred HHHHHHHHH
Q 041381 2 VQGWLSRVE 10 (307)
Q Consensus 2 v~~Wl~~lr 10 (307)
|+.|+++||
T Consensus 11 VqrWmeDLr 19 (52)
T 3sf4_D 11 VQRWMEDLK 19 (52)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 445555443
No 90
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=22.76 E-value=42 Score=26.08 Aligned_cols=25 Identities=20% Similarity=0.032 Sum_probs=15.4
Q ss_pred cHHHHHHHHhcC----CceEEEEEcCchh
Q 041381 93 TFDKVWRCLVEG----QFGIIGLYGMGGK 117 (307)
Q Consensus 93 ~~~~l~~~L~~~----~~~vi~I~G~gGi 117 (307)
.++.+.+++... ....+.|+|.+|+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~G~~Gt 65 (202)
T 2w58_A 37 AIRFAERFVAEYEPGKKMKGLYLHGSFGV 65 (202)
T ss_dssp HHHHHHHHHHHCCSSCCCCEEEEECSTTS
T ss_pred HHHHHHHHHHHhhhccCCCeEEEECCCCC
Confidence 334444554433 1167889999998
No 91
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=22.55 E-value=1.7e+02 Score=20.81 Aligned_cols=64 Identities=25% Similarity=0.270 Sum_probs=42.9
Q ss_pred hHHHHHHH--HhCCCCCCCCCChHHHHHHHHHHCCCChHHHHHHHHHHcCC-CChhHHHHHHHHHhh
Q 041381 188 DAWELFLK--KVGQETLESHPDIPELAQTVAKECSGLPLALITTSRAMSSK-KRPEERSYAIQMLRR 251 (307)
Q Consensus 188 e~~~Lf~~--~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ig~~L~~~-~~~~~w~~~l~~l~~ 251 (307)
+.|++=+. .++..+..+.|.+...|-+-+++..-.|+|+..+=+.-..- ...+-|..+++.++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lqElkP 91 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRP 91 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHHHHhh
Confidence 45555432 23444446778888888888999999999999986554322 234458888887654
No 92
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=22.13 E-value=95 Score=27.12 Aligned_cols=50 Identities=6% Similarity=0.040 Sum_probs=31.8
Q ss_pred HHHHHHHhcCCeEEEEEeCcCCHHHHhhcCCCCCCCCCCCeEEEEecCChhhhh
Q 041381 118 ASGIFNLLSKMKFLLLLDDIWERIDLAKVGVPFPASSRNASKIVFTTRLVDVCG 171 (307)
Q Consensus 118 ~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IivTtr~~~v~~ 171 (307)
.+.+...|....=+|++|.+.+.+.+..+... ...|..|++||...+.+.
T Consensus 186 ~~~La~aL~~~PdvillDEp~d~e~~~~~~~~----~~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 186 SEALRSALREDPDIILVGEMRDLETIRLALTA----AETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp HHHHHHHTTSCCSEEEESCCCSHHHHHHHHHH----HHTTCEEEEEESCSSHHH
T ss_pred HHHHHHHhhhCcCEEecCCCCCHHHHHHHHHH----HhcCCEEEEEEccChHHH
Confidence 44566666667777888888776655543222 123566888888876653
No 93
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=21.90 E-value=2.4e+02 Score=25.29 Aligned_cols=51 Identities=6% Similarity=-0.020 Sum_probs=34.6
Q ss_pred ceeecCCCCHHhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHC-CCChHHHHHHH
Q 041381 177 KTFKVECFADQDAWELFLKKVGQETLESHPDIPELAQTVAKEC-SGLPLALITTS 230 (307)
Q Consensus 177 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c-~GlPLai~~ig 230 (307)
..+.+.+++.++..+.+...+...... --.+....|++.+ +|.|-.+..+.
T Consensus 359 ~~~~~~~~~~~e~~~iL~~~~~~~~~~---~~~~~~~~i~~~a~~g~~r~a~~ll 410 (456)
T 2c9o_A 359 MIIRTMLYTPQEMKQIIKIRAQTEGIN---ISEEALNHLGEIGTKTTLRYSVQLL 410 (456)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCC---BCHHHHHHHHHHHHHSCHHHHHHTH
T ss_pred ceeeCCCCCHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHccCCCHHHHHHHH
Confidence 357999999999999998876322211 1234567788888 78887655443
No 94
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=21.89 E-value=1e+02 Score=27.76 Aligned_cols=33 Identities=15% Similarity=0.104 Sum_probs=23.3
Q ss_pred CceeeccccHHHHHHH---HhcC--CceEEEEEcCchh
Q 041381 85 PTIIGLESTFDKVWRC---LVEG--QFGIIGLYGMGGK 117 (307)
Q Consensus 85 ~~~vGr~~~~~~l~~~---L~~~--~~~vi~I~G~gGi 117 (307)
..++|.++.++.+... +..+ ..+-+.++|++|+
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGt 74 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGT 74 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTS
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcC
Confidence 5789999887765443 3333 2356889999999
No 95
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=20.81 E-value=2.2e+02 Score=19.77 Aligned_cols=52 Identities=19% Similarity=0.205 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhhhcCccCCCchhhhhHHHHHHHHHHHHHhHHhc
Q 041381 4 GWLSRVEAVEAEVGELTRDTSQEIEKLCLGGYCSKNCKSSYKFGKKVSKKLQLVATLIDD 63 (307)
Q Consensus 4 ~Wl~~lr~~ayd~ed~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~ 63 (307)
.=++++.....+|+++|+.-..++... +...|..+-.+++.-+..+..+...
T Consensus 38 ~~i~~ie~~l~EA~ell~qMelE~r~~--------p~~~R~~~~~klr~Yk~dL~~lk~e 89 (102)
T 1vcs_A 38 QMVANVEKQLEEARELLEQMDLEVREI--------PPQSRGMYSNRMRSYKQEMGKLETD 89 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTS--------CTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC--------CHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888888888877766431 2334567778888888888776553
Done!