BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041382
(600 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 72/151 (47%), Gaps = 16/151 (10%)
Query: 209 EYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLE------ 262
+ Y +IG RG LLYGPPGTGK+ L+ A+AN +N S E
Sbjct: 196 DLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVR 255
Query: 263 --YLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCC 320
+ L SI+ ++++D SI + ++Q G S R Q L LL +DG
Sbjct: 256 DVFRLARENAPSIIFIDEVD-SIATKRFDAQTG-----SDREVQRILIELLTQMDGFDQS 309
Query: 321 CGDEKITVFTTNYKDRIDPALLRAGRMDRHI 351
+ + TN D +DPALLR GR+DR I
Sbjct: 310 TNVK--VIMATNRADTLDPALLRPGRLDRKI 338
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 84/168 (50%), Gaps = 24/168 (14%)
Query: 209 EYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYL---- 264
E Y ++G +G +LYG PGTGK+ L A+AN + L +V S+ +YL
Sbjct: 206 ELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF----LRIVGSELIQKYLGDGP 261
Query: 265 -----LLHVPNR---SILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDG 316
+ V SI+ +++ID +I + +S G E R Q T+ LLN +DG
Sbjct: 262 RLCRQIFKVAGENAPSIVFIDEID-AIGTKRYDSNSGGE-----REIQRTMLELLNQLDG 315
Query: 317 LLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQL 364
GD K+ + TN + +DPAL+R GR+DR I ST K++
Sbjct: 316 -FDDRGDVKV-IMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKI 361
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 71/154 (46%), Gaps = 16/154 (10%)
Query: 209 EYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIY-----NLNLSVVTSDSSLE- 262
E + K+G +G LLYGPPGTGK+ L A+A N L + +SL
Sbjct: 41 ELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVK 100
Query: 263 --YLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCC 320
+ L SI+ +++ID + GD R Q TL LL +DG
Sbjct: 101 DIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGD------REVQRTLMQLLAEMDG-FDA 153
Query: 321 CGDEKITVFTTNYKDRIDPALLRAGRMDRHINLS 354
GD KI + TN D +DPA+LR GR DR I +
Sbjct: 154 RGDVKI-IGATNRPDILDPAILRPGRFDRIIEVP 186
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 79/159 (49%), Gaps = 20/159 (12%)
Query: 206 RGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYD-IYNLNLSVV---TSDSS- 260
+ E ++++G +G LLYGPPGTGK+ L A+A + + I++ +V +S+
Sbjct: 202 KNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESAR 261
Query: 261 -----LEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAID 315
Y H P I+ ++++D + R +G + R Q TL LL +D
Sbjct: 262 IIREMFAYAKEHEP--CIIFMDEVDA---IGGRRFSEG---TSADREIQRTLMELLTQMD 313
Query: 316 GLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLS 354
G G KI + TN D +DPALLR GR+DR + +
Sbjct: 314 G-FDNLGQTKI-IMATNRPDTLDPALLRPGRLDRKVEIP 350
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 80/166 (48%), Gaps = 20/166 (12%)
Query: 209 EYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLS-----VVTSDSSL-- 261
+ ++ +G +G L+YGPPGTGK+ L A A N L + + L
Sbjct: 205 DKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVR 264
Query: 262 -EYLLLHVPNRSILVVEDIDCSIKLQNRESQK-GDEPADSYRGPQVTLAGLLNAIDGLLC 319
+ L +I+ ++++D I + +S+K GD R Q T+ LLN +DG
Sbjct: 265 DAFALAKEKAPTIIFIDELDA-IGTKRFDSEKSGD------REVQRTMLELLNQLDGF-- 315
Query: 320 CCGDEKITVF-TTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQL 364
D+++ V TN D +DPALLR+GR+DR I + + Q+
Sbjct: 316 -SSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQI 360
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 75/155 (48%), Gaps = 20/155 (12%)
Query: 209 EYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT-------SDSSL 261
E + +G +G +LYGPPGTGK+ L A+A++ + ++ + + S
Sbjct: 172 ELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVR 231
Query: 262 EYLLL---HVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLL 318
E ++ H P SI+ +++ID + S GD Q T+ LLN +DG
Sbjct: 232 ELFVMAREHAP--SIIFMDEIDSIGSTRVEGSGGGDSEV------QRTMLELLNQLDG-F 282
Query: 319 CCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINL 353
+ KI + TN D +DPALLR GR+DR I
Sbjct: 283 ETSKNIKI-IMATNRLDILDPALLRPGRIDRKIEF 316
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 90/196 (45%), Gaps = 22/196 (11%)
Query: 176 VNLDHP-MTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSS 234
+N + P + F + + + KE V+ +D F + E Y +G +G LL GPPGTGK+
Sbjct: 1 INAEKPNVRFKDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKGVLLVGPPGTGKTL 59
Query: 235 LIAAMANYMNYDIYNLNLS-----VVTSDSSLEYLLLHVPNR---SILVVEDIDCSIKLQ 286
L A+A + +++ S V +S L + SI+ +++ID +
Sbjct: 60 LAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDA---IG 116
Query: 287 NRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEK---ITVFTTNYKDRIDPALLR 343
+ G + R + TL LL +DG G E I + TN + +DPAL+R
Sbjct: 117 KSRAAGGVVSGNDER--EQTLNQLLAEMDGF----GSENAPVIVLAATNRPEILDPALMR 170
Query: 344 AGRMDRHINLSYCTFS 359
GR DR + + F+
Sbjct: 171 PGRFDRQVLVDKPDFN 186
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 80/178 (44%), Gaps = 19/178 (10%)
Query: 183 TFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANY 242
TF + + KE V ++ R + + GK+ K G L+ GPPGTGK+ L A+A
Sbjct: 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPK-GVLMVGPPGTGKTLLAKAIAGE 68
Query: 243 MNYDIYNLNLS------VVTSDSSLEYLLLHVPNRS--ILVVEDIDCSIKLQNRESQKGD 294
+ ++ S V S + + + I+ +++ID + Q+G
Sbjct: 69 AKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGR------QRGA 122
Query: 295 EPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVF-TTNYKDRIDPALLRAGRMDRHI 351
+ + TL +L +DG G+E I V TN D +DPALLR GR DR +
Sbjct: 123 GLGGGHDEREQTLNQMLVEMDGF---EGNEGIIVIAATNRPDVLDPALLRPGRFDRQV 177
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 81/171 (47%), Gaps = 25/171 (14%)
Query: 192 DLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYN-- 249
D++E + + R + ++ +G V G LL GPPG GK+ L A+AN + +
Sbjct: 17 DIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVK 76
Query: 250 ----LNLSVVTSDSSLEYLLLHVPNRSILVV--EDIDCSIKLQNRESQKGDEPADSYRGP 303
LN+ V S+ ++ + N + V+ +++D L R S + E S R
Sbjct: 77 GPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDA---LCPRRSDR--ETGASVR-- 129
Query: 304 QVTLAGLLNAIDGLLCCCGDEKITVF---TTNYKDRIDPALLRAGRMDRHI 351
+ LL +DGL + + VF TN D IDPA+LR GR+D+ +
Sbjct: 130 --VVNQLLTEMDGL-----EARQQVFIMAATNRPDIIDPAILRPGRLDKTL 173
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 76/170 (44%), Gaps = 25/170 (14%)
Query: 192 DLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251
+LKE V F + + +IG +G LL GPPGTGK+ L A+A N ++++
Sbjct: 27 ELKEVV-----EFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHIS 81
Query: 252 ------LSVVTSDSSLEYLL----LHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYR 301
L V + + L H P I+ +++ID + +G +
Sbjct: 82 GSDFVELFVGVGAARVRDLFAQAKAHAP--CIVFIDEIDAVGR------HRGAGLGGGHD 133
Query: 302 GPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHI 351
+ TL LL +DG G I + TN D +DPALLR GR D+ I
Sbjct: 134 EREQTLNQLLVEMDGFDSKEG--IIVMAATNRPDILDPALLRPGRFDKKI 181
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 24/158 (15%)
Query: 209 EYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYL---- 264
E + +G +G LLYGPPGTGK+ A+AN + + V+ S+ +Y+
Sbjct: 233 ERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF----IRVIGSELVQKYVGEGA 288
Query: 265 --------LLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDG 316
+ I+ ++ID + + GD Q T+ L+ +DG
Sbjct: 289 RMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEV------QRTMLELITQLDG 342
Query: 317 LLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLS 354
G+ K+ +F TN + +DPALLR GR+DR + S
Sbjct: 343 -FDPRGNIKV-MFATNRPNTLDPALLRPGRIDRKVEFS 378
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 75/170 (44%), Gaps = 25/170 (14%)
Query: 192 DLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251
+LKE V F + + +IG +G LL GPPGTG + L A+A N ++++
Sbjct: 27 ELKEVV-----EFLKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAGEANVPFFHIS 81
Query: 252 ------LSVVTSDSSLEYLL----LHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYR 301
L V + + L H P I+ +++ID + +G +
Sbjct: 82 GSDFVELFVGVGAARVRDLFAQAKAHAP--CIVFIDEIDAVGR------HRGAGLGGGHD 133
Query: 302 GPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHI 351
+ TL LL +DG G I + TN D +DPALLR GR D+ I
Sbjct: 134 EREQTLNQLLVEMDGFDSKEG--IIVMAATNRPDILDPALLRPGRFDKKI 181
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 23/159 (14%)
Query: 206 RGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN----LSVVTSDS-- 259
R ++ IG RG LLYGPPGTGK+ + A+AN + +N +S + +S
Sbjct: 225 RHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESES 284
Query: 260 ----SLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAID 315
+ E + P +I+ ++++D RE G+ + ++ LL +D
Sbjct: 285 NLRKAFEEAEKNAP--AIIFIDELDAIAP--KREKTHGEV-------ERRIVSQLLTLMD 333
Query: 316 GLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLS 354
GL I + TN + IDPAL R GR DR +++
Sbjct: 334 GLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIG 370
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 22/152 (14%)
Query: 211 YRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYN------LNLSVVTSDSSLEYL 264
+ K G +G L YGPPG GK+ L A+AN + + L + S++++ +
Sbjct: 503 FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREI 562
Query: 265 LLHVPNRS--ILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCG 322
+ +L +++D K + G AD + +L +DG+
Sbjct: 563 FDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADR------VINQILTEMDGM----- 611
Query: 323 DEKITVF---TTNYKDRIDPALLRAGRMDRHI 351
K VF TN D IDPA+LR GR+D+ I
Sbjct: 612 STKKNVFIIGATNRPDIIDPAILRPGRLDQLI 643
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 23/159 (14%)
Query: 206 RGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN----LSVVTSDS-- 259
R ++ IG RG LLYGPPGTGK+ + A+AN + +N +S + +S
Sbjct: 225 RHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESES 284
Query: 260 ----SLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAID 315
+ E + P +I+ ++++D RE G+ + ++ LL +D
Sbjct: 285 NLRKAFEEAEKNAP--AIIFIDELDAIAP--KREKTHGEV-------ERRIVSQLLTLMD 333
Query: 316 GLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLS 354
GL I + TN + IDPAL R GR DR +++
Sbjct: 334 GLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIG 370
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 22/152 (14%)
Query: 211 YRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYN------LNLSVVTSDSSLEYL 264
+ K G +G L YGPPG GK+ L A+AN + + L + S++++ +
Sbjct: 503 FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREI 562
Query: 265 LLHVPNRS--ILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCG 322
+ +L +++D K + G AD + +L +DG+
Sbjct: 563 FDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADR------VINQILTEMDGM----- 611
Query: 323 DEKITVF---TTNYKDRIDPALLRAGRMDRHI 351
K VF TN D IDPA+LR GR+D+ I
Sbjct: 612 STKKNVFIIGATNRPDIIDPAILRPGRLDQLI 643
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 23/159 (14%)
Query: 206 RGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN----LSVVTSDS-- 259
R ++ IG RG LLYGPPGTGK+ + A+AN + +N +S + +S
Sbjct: 225 RHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESES 284
Query: 260 ----SLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAID 315
+ E + P +I+ ++++D RE G+ + ++ LL +D
Sbjct: 285 NLRKAFEEAEKNAP--AIIFIDELDAIAP--KREKTHGEV-------ERRIVSQLLTLMD 333
Query: 316 GLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLS 354
GL I + TN + IDPAL R GR DR +++
Sbjct: 334 GLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIG 370
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 23/159 (14%)
Query: 206 RGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN----LSVVTSDS-- 259
R ++ IG RG LLYGPPGTGK+ + A+AN + +N +S + +S
Sbjct: 225 RHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESES 284
Query: 260 ----SLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAID 315
+ E + P +I+ ++++D RE G+ + ++ LL +D
Sbjct: 285 NLRKAFEEAEKNAP--AIIFIDELDAIAP--KREKTHGEV-------ERRIVSQLLTLMD 333
Query: 316 GLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLS 354
GL I + TN + IDPAL R GR DR +++
Sbjct: 334 GLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIG 370
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 23/159 (14%)
Query: 206 RGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN----LSVVTSDS-- 259
R ++ IG RG LLYGPPGTGK+ + A+AN + +N +S + +S
Sbjct: 225 RHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESES 284
Query: 260 ----SLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAID 315
+ E + P +I+ ++++D RE G+ + ++ LL +D
Sbjct: 285 NLRKAFEEAEKNAP--AIIFIDELDAIAP--KREKTHGEV-------ERRIVSQLLTLMD 333
Query: 316 GLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLS 354
GL I + TN + IDPAL R GR DR +++
Sbjct: 334 GLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIG 370
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 23/159 (14%)
Query: 206 RGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN----LSVVTSDS-- 259
R ++ IG RG LLYGPPGTGK+ + A+AN + +N +S + +S
Sbjct: 225 RHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESES 284
Query: 260 ----SLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAID 315
+ E + P +I+ ++++D RE G+ + ++ LL +D
Sbjct: 285 NLRKAFEEAEKNAP--AIIFIDELDAIAP--KREKTHGEV-------ERRIVSQLLTLMD 333
Query: 316 GLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLS 354
GL I + TN + IDPAL R GR DR +++
Sbjct: 334 GLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIG 370
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 79/174 (45%), Gaps = 15/174 (8%)
Query: 204 FRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN----LSVVTSDS 259
+ + E + ++G +G LL GPPG GK+ L A+A + + V+
Sbjct: 24 YLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLG 83
Query: 260 SLEYLLLHVPNRS----ILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAID 315
+ L R+ I+ +++ID ++ + + G + + TL LL +D
Sbjct: 84 AARVRSLFKEARARAPCIVYIDEID-AVGKKRSTTMSGFSNTEE----EQTLNQLLVEMD 138
Query: 316 GLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYL 369
G+ D I + +TN D +D AL+R GR+DRH+ + T +++ +L
Sbjct: 139 GM--GTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHL 190
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 71/172 (41%), Gaps = 22/172 (12%)
Query: 204 FRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY--------DIYNLNLSVV 255
F + + ++G +G LL GPPG GK+ L A+A D + + V
Sbjct: 49 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 108
Query: 256 TSDSS--LEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNA 313
+ E H P I+ +++ID + + G++ + TL LL
Sbjct: 109 AARVRDLFETAKRHAP--CIVFIDEIDAVGRKRGSGVGGGNDEREQ------TLNQLLVE 160
Query: 314 IDGLLCCCGDEKITVFT-TNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQL 364
+DG D I V TN D +DPALLR GR DR I + +Q+
Sbjct: 161 MDGFEK---DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQI 209
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 71/172 (41%), Gaps = 22/172 (12%)
Query: 204 FRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY--------DIYNLNLSVV 255
F + + ++G +G LL GPPG GK+ L A+A D + + V
Sbjct: 34 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 93
Query: 256 TSDSS--LEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNA 313
+ E H P I+ +++ID R+ G + R + TL LL
Sbjct: 94 AARVRDLFETAKRHAP--CIVFIDEIDAV----GRKRGSGVGGGNDER--EQTLNQLLVE 145
Query: 314 IDGLLCCCGDEKITVFT-TNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQL 364
+DG D I V TN D +DPALLR GR DR I + +Q+
Sbjct: 146 MDGFEK---DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQI 194
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 71/172 (41%), Gaps = 22/172 (12%)
Query: 204 FRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY--------DIYNLNLSVV 255
F + + ++G +G LL GPPG GK+ L A+A D + + V
Sbjct: 58 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 117
Query: 256 TSDSS--LEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNA 313
+ E H P I+ +++ID + + G++ + TL LL
Sbjct: 118 AARVRDLFETAKRHAP--CIVFIDEIDAVGRKRGSGVGGGNDEREQ------TLNQLLVE 169
Query: 314 IDGLLCCCGDEKITVFT-TNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQL 364
+DG D I V TN D +DPALLR GR DR I + +Q+
Sbjct: 170 MDGFEK---DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQI 218
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 71/172 (41%), Gaps = 22/172 (12%)
Query: 204 FRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM--------NYDIYNLNLSVV 255
F + + ++G +G LL GPPG GK+ L A+A D + + V
Sbjct: 58 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 117
Query: 256 TSDSS--LEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNA 313
+ E H P I+ +++ID + + G++ + TL LL
Sbjct: 118 AARVRDLFETAKRHAP--CIVFIDEIDAVGRKRGSGVGGGNDEREQ------TLNQLLVE 169
Query: 314 IDGLLCCCGDEKITVFT-TNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQL 364
+DG D I V TN D +DPALLR GR DR I + +Q+
Sbjct: 170 MDGFEK---DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQI 218
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 22/152 (14%)
Query: 211 YRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYN------LNLSVVTSDSSLEYL 264
+ K G +G L YGPPG GK+ L A+AN + + L + S++++ +
Sbjct: 41 FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREI 100
Query: 265 LLHVPNRS--ILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCG 322
+ +L +++D K + G AD + +L +DG+
Sbjct: 101 FDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADR------VINQILTEMDGM----- 149
Query: 323 DEKITVF---TTNYKDRIDPALLRAGRMDRHI 351
K VF TN D IDPA+LR GR+D+ I
Sbjct: 150 STKKNVFIIGATNRPDIIDPAILRPGRLDQLI 181
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 78/176 (44%), Gaps = 22/176 (12%)
Query: 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLE--------YLLLHVPNR 271
+G LL+GPPGTGK+ + +A+ ++++ S +TS E + +
Sbjct: 118 KGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQP 177
Query: 272 SILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTT 331
+++ +++ID + SQ+GD +S R + L +DG D + V T
Sbjct: 178 AVIFIDEIDSLL------SQRGDGEHESSRRIKTE---FLVQLDGATTSSEDRILVVGAT 228
Query: 332 NYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLMEKV 387
N ID A R R+ + + + S KQ+ N + + C E+ +E++
Sbjct: 229 NRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLM---SKEQCCLSEEEIEQI 279
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 17/136 (12%)
Query: 216 KVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSD-----SSLEYLLLHVPN 270
+ RG LL+GPPG GK+ L A+A N +N++ + +TS L L V
Sbjct: 145 RAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVAR 204
Query: 271 R---SILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKIT 327
SI+ ++ +D S+ + RE + D+ R + L DG+ D +
Sbjct: 205 ELQPSIIFIDQVD-SLLCERREGEH-----DASRRLKTE---FLIEFDGVQSAGDDRVLV 255
Query: 328 VFTTNYKDRIDPALLR 343
+ TN +D A+LR
Sbjct: 256 MGATNRPQELDEAVLR 271
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 195 ETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLI-AAMANYMNYDIYNLNLS 253
+ V+ +D + K +Y + KRG +L GPPG+GK+ ++ A+ N YD+ +N S
Sbjct: 1026 DIVIPTIDTIKHEKIFYDLLNS--KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFS 1083
Query: 254 VVTSDSSLEYLL 265
D++ E++L
Sbjct: 1084 ---KDTTTEHIL 1092
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 195 ETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLI-AAMANYMNYDIYNLNLS 253
+ V+ +D + K +Y + KRG +L GPPG+GK+ ++ A+ N YD+ +N S
Sbjct: 1245 DIVIPTIDTIKHEKIFYDLLNS--KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFS 1302
Query: 254 VVTSDSSLEYLL 265
D++ E++L
Sbjct: 1303 ---KDTTTEHIL 1311
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTS 257
G LLYGPPGTGKS L A+A N ++++ S + S
Sbjct: 53 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 89
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTS 257
G LLYGPPGTGKS L A+A N ++++ S + S
Sbjct: 62 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 98
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTS 257
G LLYGPPGTGKS L A+A N ++++ S + S
Sbjct: 71 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 107
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTS 257
G LLYGPPGTGKS L A+A N ++++ S + S
Sbjct: 86 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 122
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYL 264
RG LL+GPPGTGKS L A+A N + S+ +SD ++L
Sbjct: 168 RGILLFGPPGTGKSYLAKAVATEANNSTF---FSISSSDLVSKWL 209
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYL 264
RG LL+GPPGTGKS L A+A N + S+ +SD ++L
Sbjct: 46 RGILLFGPPGTGKSYLAKAVATEANNSTF---FSISSSDLVSKWL 87
>pdb|3JVV|A Chain A, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|B Chain B, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|C Chain C, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVU|A Chain A, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|B Chain B, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|C Chain C, Crystal Structure Of Unliganded P. Aeruginosa Pilt
Length = 356
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 209 EYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYL 264
E ++++ V + L+ GP G+GKS+ +AAM +Y+N Y+ ++T + +E++
Sbjct: 113 EVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYH---HILTIEDPIEFV 165
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 207 GKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTS 257
GK R I +L+GPPGTGK++L +A Y N D+ +S VTS
Sbjct: 38 GKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVE--RISAVTS 86
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSL 261
R +LYGPPG GK++ +A + YDI N S V S + L
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLL 119
>pdb|2EWV|A Chain A, Crystal Structure Of The Pilus Retraction Motor Pilt And
Bound Adp
Length = 372
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 8/57 (14%)
Query: 211 YRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYLLLH 267
+RK+G + L+ GP G+GKS+ IA+M +Y+N + ++T + +EY+ H
Sbjct: 133 HRKMGLI-----LVTGPTGSGKSTTIASMIDYIN---QTKSYHIITIEDPIEYVFKH 181
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 4/31 (12%)
Query: 223 LLYGPPGTGKSSLIAAMANYMNYDIYNLNLS 253
L YGPPGTGK+S I A+A +IY N S
Sbjct: 50 LFYGPPGTGKTSTIVALAR----EIYGKNYS 76
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTS 257
+G LL+GPPG GK+ L A+A + N++ + +TS
Sbjct: 55 KGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTS 92
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYMNYD 246
GK+ R L+ G PGTGK+++ MA + D
Sbjct: 66 GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD 97
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 216 KVWKRGYLLYGPPGTGKSSLIAAMANYMNYDI 247
K+ R LL GPPGTGK++L A+A + +
Sbjct: 60 KMAGRAVLLAGPPGTGKTALALAIAQELGSKV 91
>pdb|4B3G|A Chain A, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
pdb|4B3G|B Chain B, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
Length = 646
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 15/67 (22%)
Query: 170 RWSSSGVNLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPG 229
R + S + HP+TF +D KE VL L K +++GPPG
Sbjct: 171 RSAPSPASEIHPLTFFNTCLDTSQKEAVLFALS---------------QKELAIIHGPPG 215
Query: 230 TGKSSLI 236
TGK++ +
Sbjct: 216 TGKTTTV 222
>pdb|4B3F|X Chain X, Crystal Structure Of 1ghmbp2 Helicase
Length = 646
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 15/67 (22%)
Query: 170 RWSSSGVNLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPG 229
R + S + HP+TF +D KE VL L K +++GPPG
Sbjct: 171 RSAPSPASEIHPLTFFNTCLDTSQKEAVLFALS---------------QKELAIIHGPPG 215
Query: 230 TGKSSLI 236
TGK++ +
Sbjct: 216 TGKTTTV 222
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 216 KVWKRGYLLYGPPGTGKSSLIAAMANYMNYDI 247
K R LL GPPGTGK++L A+A + +
Sbjct: 74 KXAGRAVLLAGPPGTGKTALALAIAQELGSKV 105
>pdb|2EWW|A Chain A, Crystal Structure Of The Pilus Retraction Motor Pilt And
Bound Atp
Length = 372
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 8/57 (14%)
Query: 211 YRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYLLLH 267
+RK G + L+ GP G+GKS+ IA+ +Y+N + ++T + +EY+ H
Sbjct: 133 HRKXGLI-----LVTGPTGSGKSTTIASXIDYIN---QTKSYHIITIEDPIEYVFKH 181
>pdb|2QGZ|A Chain A, Crystal Structure Of A Putative Primosome Component From
Streptococcus Pyogenes Serotype M3. Northeast Structural
Genomics Target Dr58
Length = 308
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 31/144 (21%)
Query: 201 LDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMAN-----------YMNYDIYN 249
++ F ++ + ++G LYG G GKS L+AAMA+ +++ +
Sbjct: 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193
Query: 250 LNLSVVTSDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAG 309
+++ S+ S++ + V N +L+++DI G E A S+ +V
Sbjct: 194 IDVKNAISNGSVKEEIDAVKNVPVLILDDI-------------GAEQATSWVRDEV---- 236
Query: 310 LLNAIDGLLCCCGDEKITVFTTNY 333
L I L +E T FT+NY
Sbjct: 237 -LQVI--LQYRMLEELPTFFTSNY 257
>pdb|2GSZ|A Chain A, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|B Chain B, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|C Chain C, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|D Chain D, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|E Chain E, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|F Chain F, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
Length = 363
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 8/57 (14%)
Query: 211 YRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYLLLH 267
+RK G + L+ GP G+GKS+ IA+ +Y+N + ++T + +EY+ H
Sbjct: 122 HRKXGLI-----LVTGPTGSGKSTTIASXIDYIN---QTKSYHIITIEDPIEYVFKH 170
>pdb|2EYU|A Chain A, The Crystal Structure Of The C-Terminal Domain Of Aquifex
Aeolicus Pilt
pdb|2EYU|B Chain B, The Crystal Structure Of The C-Terminal Domain Of Aquifex
Aeolicus Pilt
Length = 261
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 8/57 (14%)
Query: 211 YRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYLLLH 267
+RK G + L+ GP G+GKS+ IA+ +Y+N + ++T + +EY+ H
Sbjct: 22 HRKXGLI-----LVTGPTGSGKSTTIASXIDYIN---QTKSYHIITIEDPIEYVFKH 70
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
Length = 3245
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 220 RGYLLYGPPGTGKS-SLIAAMANYMNYDIYNLNLSVVTS 257
R +L GPPG+GK+ +L + + + ++++ +LN S T+
Sbjct: 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT 1343
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 220 RGYLLYGPPGTGKS-SLIAAMANYMNYDIYNLNLSVVTS 257
R +L GPPG+GK+ +L + + + ++++ +LN S T+
Sbjct: 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT 1343
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 223 LLYGPPGTGKSSLIAAM 239
L YGPPGTGK+S I A+
Sbjct: 62 LFYGPPGTGKTSTILAL 78
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 31/57 (54%)
Query: 223 LLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYLLLHVPNRSILVVEDI 279
LL GPPG GK++L +A+ + +I+ + V+ + +L + +L +++I
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 31/57 (54%)
Query: 223 LLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYLLLHVPNRSILVVEDI 279
LL GPPG GK++L +A+ + +I+ + V+ + +L + +L +++I
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 31/57 (54%)
Query: 223 LLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYLLLHVPNRSILVVEDI 279
LL GPPG GK++L +A+ + +I+ + V+ + +L + +L +++I
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 31/57 (54%)
Query: 223 LLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYLLLHVPNRSILVVEDI 279
LL GPPG GK++L +A+ + +I+ + V+ + +L + +L +++I
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 31/57 (54%)
Query: 223 LLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYLLLHVPNRSILVVEDI 279
LL GPPG GK++L +A+ + +I+ + V+ + +L + +L +++I
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 224 LYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSL 261
L GPPG GK+SL ++A + ++L V +S +
Sbjct: 113 LAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEI 150
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 218 WKRGYLLYGPPGTGKSSLIAAMANYM 243
KR LL G PGTGKS L AMA +
Sbjct: 59 QKRHVLLIGEPGTGKSMLGQAMAELL 84
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 31/57 (54%)
Query: 223 LLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYLLLHVPNRSILVVEDI 279
LL GPPG G+++L +A+ + +I+ + V+ + +L + +L +++I
Sbjct: 55 LLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|1XDL|A Chain A, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 277k
pdb|1XDL|B Chain B, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 277k
pdb|1XDL|C Chain C, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 277k
pdb|1XDL|D Chain D, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 277k
pdb|1XDL|W Chain W, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 277k
pdb|1XDL|X Chain X, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 277k
pdb|1XDL|Y Chain Y, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 277k
pdb|1XDL|Z Chain Z, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 277k
pdb|1XDM|A Chain A, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 291k
pdb|1XDM|B Chain B, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 291k
pdb|1XDM|C Chain C, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 291k
pdb|1XDM|D Chain D, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 291k
pdb|1XDM|W Chain W, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 291k
pdb|1XDM|X Chain X, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 291k
pdb|1XDM|Y Chain Y, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 291k
pdb|1XDM|Z Chain Z, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 291k
Length = 365
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 337 IDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLY 377
++P ++ G D L +C + T K LAA Y +NDH +Y
Sbjct: 188 VEPEVIPDGDHD----LEHCQYVTEKVLAAVYKALNDHHVY 224
>pdb|1FDJ|A Chain A, Fructose 1,6-Bisphosphate Aldolase From Rabbit Liver
pdb|1FDJ|B Chain B, Fructose 1,6-Bisphosphate Aldolase From Rabbit Liver
pdb|1FDJ|C Chain C, Fructose 1,6-Bisphosphate Aldolase From Rabbit Liver
pdb|1FDJ|D Chain D, Fructose 1,6-Bisphosphate Aldolase From Rabbit Liver
Length = 363
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 337 IDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLY 377
++P ++ G D L +C + T K LAA Y +NDH +Y
Sbjct: 186 VEPEVIPDGDHD----LEHCQYVTEKVLAAVYKALNDHHVY 222
>pdb|1QO5|A Chain A, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|B Chain B, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|C Chain C, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|D Chain D, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|E Chain E, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|F Chain F, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|G Chain G, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|H Chain H, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|I Chain I, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|J Chain J, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|K Chain K, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|L Chain L, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|M Chain M, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|N Chain N, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|O Chain O, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|P Chain P, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|Q Chain Q, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|R Chain R, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
Length = 363
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 337 IDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLY 377
++P ++ G D L +C + T K LAA Y +NDH +Y
Sbjct: 186 VEPEVIPDGDHD----LEHCQYVTEKVLAAVYKALNDHHVY 222
>pdb|2DIE|A Chain A, Alkaline Alpha-Amylase Amyk From Bacillus Sp. Ksm-1378
Length = 485
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 90/219 (41%), Gaps = 26/219 (11%)
Query: 95 RNSEIVDVFQ-GVTMKWKFNSDINSTSHFETRWYELKFHKMHTELVKKKYLVH-VLEMAK 152
RN EI + K+ F N+ S+F+ RWY H T+ + + L + + +
Sbjct: 127 RNQEISGEYTIEAWTKFDFPGRGNTHSNFKWRWY----HFDGTDWDQSRQLQNKIYKFRG 182
Query: 153 MFKDRNRIVRFHTIRHDRWSSSGVNLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYR 212
K + V +D + +++DHP L G LN LD FR + +
Sbjct: 183 TGKAWDWEVDIENGNYDYLMYADIDMDHPEVINELRNWGVWYTNTLN-LDGFR--IDAVK 239
Query: 213 KIGKVWKRGYLLYGPPGTGKSSL---------IAAMANYMNYDIYN-------LNLSVVT 256
I + R +L + TGK +AA+ NY+N +N L+ ++
Sbjct: 240 HIKYSYTRDWLTHVRNTTGKPMFAVAEFWKNDLAAIENYLNKTSWNHSVFDVPLHYNLYN 299
Query: 257 SDSSLEYL-LLHVPNRSILVVEDIDCSIKLQNRESQKGD 294
+ +S Y + ++ N S++ I + N +SQ G+
Sbjct: 300 ASNSGGYFDMRNILNGSVVQKHPIHAVTFVDNHDSQPGE 338
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,522,003
Number of Sequences: 62578
Number of extensions: 661401
Number of successful extensions: 1739
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1650
Number of HSP's gapped (non-prelim): 90
length of query: 600
length of database: 14,973,337
effective HSP length: 104
effective length of query: 496
effective length of database: 8,465,225
effective search space: 4198751600
effective search space used: 4198751600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)