BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041382
(600 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54DY9|BCS1B_DICDI Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum
GN=bcsl1b PE=3 SV=1
Length = 458
Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 124/235 (52%), Gaps = 24/235 (10%)
Query: 186 TLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY 245
++++D E ++ D+ F ++Y G ++RGYLLYGPPGTGKSS I A+A +
Sbjct: 208 SVILDKGKSELIIQDVKKFLNNSDWYNDRGIPYRRGYLLYGPPGTGKSSFITALAGELQL 267
Query: 246 DIYNLNLSVVT-SDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRE----SQKGDEPADS- 299
I LNL+ + SD+SL LL P RSI+++EDID +I+ N + S + P+ S
Sbjct: 268 SICILNLAGKSVSDTSLNQLLATAPQRSIILLEDIDSAIQTGNHDLSAKSNSANAPSISS 327
Query: 300 --------YRGPQV-------TLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRA 344
Y P V T +GLLNA+DG+ G +I TTN+ +++D L+R
Sbjct: 328 GGLQYQGYYGNPSVSSGGSALTFSGLLNALDGVAASEG--RILFMTTNHLEKLDKVLIRP 385
Query: 345 GRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLMEKVKVSPAEVAGELM 399
GR+D I + C+ +Q+ + D DL + +E K SPA++ M
Sbjct: 386 GRVDLQIEIGLCSSYQMEQMFLKFYP-TDFDLAKQFVEKLENYKFSPAQLQAYFM 439
>sp|P32839|BCS1_YEAST Mitochondrial chaperone BCS1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BCS1 PE=1 SV=2
Length = 456
Score = 129 bits (323), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 112/173 (64%), Gaps = 10/173 (5%)
Query: 186 TLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY 245
++++D +KE +L+D+ F + ++Y G ++RGYLLYGPPG+GK+S I A+A ++Y
Sbjct: 227 SVILDSGIKEGILDDVYDFMKNGKWYSDRGIPYRRGYLLYGPPGSGKTSFIQALAGELDY 286
Query: 246 DIYNLNLSVVT-SDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQ 304
+I LNLS +D L +L+ ++P RSIL++EDID + N+ SQ G++ S
Sbjct: 287 NICILNLSENNLTDDRLNHLMNNMPERSILLLEDIDAAF---NKRSQTGEQGFHS----S 339
Query: 305 VTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCT 357
VT +GLLNA+DG+ +E IT TTN+ +++D A++R GR+D + + T
Sbjct: 340 VTFSGLLNALDGV--TSSEETITFMTTNHPEKLDAAIMRPGRIDYKVFVGNAT 390
>sp|Q9P6Q3|BCS1_SCHPO Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC644.07 PE=2 SV=1
Length = 449
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 121/208 (58%), Gaps = 13/208 (6%)
Query: 165 TIRHDRWSSSGVNLDHPMT---FGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRG 221
T + W++ HP + ++V++ ++K+ + +D+ F R ++Y G ++RG
Sbjct: 185 TTIYTAWATEWKPFGHPRSKRMLSSVVLESNVKKMITDDVHDFLRNSQWYDTRGIPYRRG 244
Query: 222 YLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT-SDSSLEYLLLHVPNRSILVVEDID 280
YLLYGPPG+GK+S + A+A ++YDI LNL+ +D L +LL +VP ++++++ED+D
Sbjct: 245 YLLYGPPGSGKTSFLYALAGELDYDICVLNLAEKGLTDDRLNHLLSNVPPKAVVLLEDVD 304
Query: 281 CSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPA 340
+ + + R + G VT +GLLNA+DG+ DE+I TTN+ +++DPA
Sbjct: 305 SAFQGRERSGEVGFH-------ANVTFSGLLNALDGV--TSSDERIIFMTTNHPEKLDPA 355
Query: 341 LLRAGRMDRHINLSYCTFSTFKQLAANY 368
L+R GR+D L T +++ +
Sbjct: 356 LVRPGRVDVKAYLGNATPEQVREMFTRF 383
>sp|Q7ZV60|BCS1_DANRE Mitochondrial chaperone BCS1 OS=Danio rerio GN=bcs1l PE=2 SV=2
Length = 420
Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 123/221 (55%), Gaps = 9/221 (4%)
Query: 186 TLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY 245
++V++ + E +++D+ F ++Y G ++RGYLLYGPPG GKSS I A+A + Y
Sbjct: 190 SVVLESGVAERIVDDVKEFIGNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITALAGELGY 249
Query: 246 DIYNLNLSVVT-SDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRG-P 303
I ++LS + SD L +LL P +SI+++ED+D + +RE + P +Y+G
Sbjct: 250 SICLMSLSDRSLSDDRLNHLLSVAPQQSIILLEDVDAA--FVSRELLPTENPL-AYQGMG 306
Query: 304 QVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQ 363
++T +GLLNA+DG+ + +I TTN+ +R+DPAL+R GR+D + +C+ Q
Sbjct: 307 RLTFSGLLNALDGV--ASSEARIVFMTTNFIERLDPALVRPGRVDLKQYVGHCSHWQLTQ 364
Query: 364 LAANYLDINDHDLYCHI--EKLMEKVKVSPAEVAGELMKAK 402
+ + H + L +S A+V G M K
Sbjct: 365 MFRRFYPQESAAEADHFSEQALAAHTDLSAAQVQGHFMLYK 405
>sp|Q54HY8|BCS1A_DICDI Probable mitochondrial chaperone BCS1-A OS=Dictyostelium discoideum
GN=bcs1la PE=3 SV=1
Length = 421
Score = 116 bits (291), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 132/254 (51%), Gaps = 19/254 (7%)
Query: 183 TFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANY 242
+ ++++ DLK ++ D+ F + +YR G ++RGYLLYG PG GKSSLI A+A
Sbjct: 185 SLSSVILADDLKSKLIEDIKSFITNESWYRNRGIPYRRGYLLYGEPGNGKSSLINAIAGE 244
Query: 243 MNYDIYNLNLSVV-TSDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYR 301
+N DI ++LS D + +LL + P +SIL++EDID + K + +S
Sbjct: 245 LNLDICIVSLSSKDIDDKQINHLLNNAPPKSILLIEDIDAAFK--SHRDNVDSNNNNSNN 302
Query: 302 GPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTF 361
+T +GLLNA+DG+ G +I TTN + +D AL+R GR+D I +S T S
Sbjct: 303 NNSLTYSGLLNALDGVASQEG--RILFMTTNKIELLDSALIREGRIDLKIKVSNATKSQA 360
Query: 362 KQLAANYLDI-NDHDLYCHIEKLMEKVKVSPAEVAGELMKAKGSKTSLEDFITYLESKES 420
QL ++ ++ D+ L + + ++S +++ G L+K Y+ S E
Sbjct: 361 AQLFTHFYNLPTDNQLAIRFSENLHDHQLSMSQIQGFLLK-------------YINSPEK 407
Query: 421 QEEKSSTAPPLASN 434
E+ + P N
Sbjct: 408 AIEEVQSITPFNLN 421
>sp|Q9CZP5|BCS1_MOUSE Mitochondrial chaperone BCS1 OS=Mus musculus GN=Bcs1l PE=1 SV=1
Length = 418
Score = 112 bits (280), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 152/312 (48%), Gaps = 27/312 (8%)
Query: 103 FQGVTMKWKFNSDINSTS-HFETRWYELKFHKMHTELVKKKYLVHVLEMAKMF---KDRN 158
+QG ++ + N D+ T W + F + T+ +K ++LE A+ ++
Sbjct: 108 YQGKWIRVERNRDMQMVDLQTGTPWESVTFTALGTD---RKVFFNILEEARALALQQEEG 164
Query: 159 RIVRFHTIRHDRWSSSGV-NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKV 217
+ V + + + W + G P+ ++V+ L + ++ D+ F ++Y G
Sbjct: 165 KTVMYTAVGSE-WRTFGYPRRRRPLD--SVVLQQGLADRIVKDIREFIDNPKWYIDRGIP 221
Query: 218 WKRGYLLYGPPGTGKSSLIAAMANYMNYDI-YNLNLSVVTSDSSLEYLLLHVPNRSILVV 276
++RGYLLYGPPG GKSS I A+A + + I SD L +LL P +S++++
Sbjct: 222 YRRGYLLYGPPGCGKSSFITALAGELEHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLL 281
Query: 277 EDIDCSIKLQNRESQKGDEPADSYRG-PQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKD 335
ED+D + ++ E Y+G ++T +GLLNA+DG+ + +I TTNY D
Sbjct: 282 EDVDAAFLSRDLAV----ENPIKYQGLGRLTFSGLLNALDGV--ASTEARIVFMTTNYID 335
Query: 336 RIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLMEKV-----KVS 390
R+DPAL+R GR+D + YC+ Q+ + L E E V ++S
Sbjct: 336 RLDPALIRPGRVDLKEYVGYCSHWQLTQMFQRFYPGQAPSL---AENFAEHVLKATSEIS 392
Query: 391 PAEVAGELMKAK 402
PA+V G M K
Sbjct: 393 PAQVQGYFMLYK 404
>sp|Q7ZTL7|BCS1_XENLA Mitochondrial chaperone BCS1 OS=Xenopus laevis GN=bcs1l PE=2 SV=1
Length = 419
Score = 112 bits (280), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 114/221 (51%), Gaps = 10/221 (4%)
Query: 186 TLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY 245
++V++ + E ++ D+ F ++Y G ++RGYLLYGPPG GKSS I A+A + Y
Sbjct: 190 SVVLEQGISEKIVQDVKGFIENPKWYSDRGIPYRRGYLLYGPPGCGKSSFITALAGELEY 249
Query: 246 DI-YNLNLSVVTSDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRG-P 303
I SD L +LL P +SI+++ED+D + ++ Q +Y+G
Sbjct: 250 SICLMSLSDSSLSDDRLNHLLSVAPQQSIILLEDVDAAFVSRDLNKQN----PTAYQGMG 305
Query: 304 QVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQ 363
++T +GLLNA+DG+ + +I TTN+ DR+DPAL+R GR+D + +CT Q
Sbjct: 306 RLTFSGLLNALDGVAST--EARIVFMTTNHIDRLDPALIRPGRVDVKQYVGHCTNWQLSQ 363
Query: 364 LAANYL--DINDHDLYCHIEKLMEKVKVSPAEVAGELMKAK 402
+ + L K+S A+V G M K
Sbjct: 364 MFLRFYPDQTAGQSEAFASAALSSSDKISAAQVQGHFMMHK 404
>sp|Q9Y276|BCS1_HUMAN Mitochondrial chaperone BCS1 OS=Homo sapiens GN=BCS1L PE=1 SV=1
Length = 419
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 143/290 (49%), Gaps = 26/290 (8%)
Query: 124 TRWYELKFHKMHTELVKKKYLVHVLEMAK---MFKDRNRIVRFHTIRHDRWSSSGV-NLD 179
T W + F + T+ +K ++LE A+ + ++ + V + + + W G
Sbjct: 130 TPWESVTFTALGTD---RKVFFNILEEARELALQQEEGKTVMYTAVGSE-WRPFGYPRRR 185
Query: 180 HPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAM 239
P+ ++V+ L + ++ D+ F ++Y G ++RGYLLYGPPG GKSS I A+
Sbjct: 186 RPLN--SVVLQQGLADRIVRDVQEFIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITAL 243
Query: 240 ANYMNYDI-YNLNLSVVTSDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPAD 298
A + + I SD L +LL P +S++++ED+D + ++ E
Sbjct: 244 AGELEHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLEDVDAAFLSRDLAV----ENPV 299
Query: 299 SYRG-PQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCT 357
Y+G ++T +GLLNA+DG+ + +I TTN+ DR+DPAL+R GR+D + YC+
Sbjct: 300 KYQGLGRLTFSGLLNALDGV--ASTEARIVFMTTNHVDRLDPALIRPGRVDLKEYVGYCS 357
Query: 358 FSTFKQLAANYLDINDHDLYCHIEKLMEKV-----KVSPAEVAGELMKAK 402
Q+ + L E E V ++SPA+V G M K
Sbjct: 358 HWQLTQMFQRFYPGQAPSL---AENFAEHVLRATNQISPAQVQGYFMLYK 404
>sp|Q5E9H5|BCS1_BOVIN Mitochondrial chaperone BCS1 OS=Bos taurus GN=BCS1L PE=2 SV=1
Length = 419
Score = 110 bits (274), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 144/287 (50%), Gaps = 20/287 (6%)
Query: 124 TRWYELKFHKMHTELVKKKYLVHVLEMAK---MFKDRNRIVRFHTIRHDRWSSSGV-NLD 179
T W + F + T+ +K ++LE A+ + ++ + V + + + W G
Sbjct: 130 TPWESVTFTALGTD---RKVFFNILEEARELALQQEEGKTVMYTAVGSE-WRPFGYPRRR 185
Query: 180 HPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAM 239
P+ ++V++ + E ++ D+ F ++Y G ++RGYLLYGPPG GKSS I A+
Sbjct: 186 RPLN--SVVLEQGVTERIVRDIREFIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFITAL 243
Query: 240 ANYMNYDI-YNLNLSVVTSDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPAD 298
A + + I SD L +LL P +S++++ED+D + ++ + E
Sbjct: 244 AGELQHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLEDVDAAFLSRDLAA----ENPI 299
Query: 299 SYRG-PQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCT 357
Y+G ++T +GLLNA+DG+ + +I TTN+ DR+DPAL+R GR+D + +C+
Sbjct: 300 KYQGLGRLTFSGLLNALDGV--ASTEARIVFMTTNHIDRLDPALIRPGRVDMKEYVGHCS 357
Query: 358 FSTFKQLAANYLDINDHDLYCHIEK--LMEKVKVSPAEVAGELMKAK 402
Q+ + L + L ++SPA+V G M K
Sbjct: 358 RWQLTQMFQRFYPGQATSLAENFADRVLQATTQISPAQVQGYFMLYK 404
>sp|Q5UPR4|YR776_MIMIV Uncharacterized protein R776 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_R776 PE=4 SV=1
Length = 314
Score = 82.8 bits (203), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 114/232 (49%), Gaps = 39/232 (16%)
Query: 126 WYELKFHK---MHTELVKKKYLVHVLEMAKMF-----KDRNRIVRF----HTI--RHDR- 170
+Y++K K + V K +++ L F K NR+ +F H+I R D
Sbjct: 86 FYKIKTRKHGWIFVNYVDNKLILYKLPKISFFPPQIKKQTNRLKKFIDSVHSISCRPDEM 145
Query: 171 ---WSSSGVNLDHPMTFGTL-VMDGDLK---ETVLNDLDCFRRGKEYYRKIGKVWKRGYL 223
++S+ N +P+ +D +L +VL D+D F R ++ YR++G ++RG L
Sbjct: 146 RMCYTSNNNNWSYPIIRRPCKFLDSNLTTEMRSVLKDVDVFMRNEDTYRELGANYRRGML 205
Query: 224 LYGPPGTGKSSLIAAMANYMNYDIYNLNL-SVVTSDSSLEYLLLHVPNRSILVVEDIDCS 282
LYG G GK+ LI+ ++N D Y LNL S SDS L L +V RSILV+E+ID
Sbjct: 206 LYGESGCGKTGLISIISNKYGMDSYILNLNSKDMSDSVLISLASNVKARSILVIEEIDKQ 265
Query: 283 IKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGL-----LCCCGDEKITVF 329
I+ N K V++ GLL+A+DG + C D + +F
Sbjct: 266 IETLNANGNK-----------NVSIGGLLSALDGPQGLAHVLCYNDSQCDIF 306
>sp|Q8TX03|PAN_METKA Proteasome-activating nucleotidase OS=Methanopyrus kandleri (strain
AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=pan PE=3
SV=1
Length = 436
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 74/154 (48%), Gaps = 16/154 (10%)
Query: 209 EYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLE------ 262
E + K+G +G LLYGPPGTGK+ L A+AN+ + L + E
Sbjct: 203 ELFEKVGVEPPKGVLLYGPPGTGKTLLAKAVANHADATFIRLAAPELVQKFIGEGARLVR 262
Query: 263 --YLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCC 320
+ L SI+ +++ID + R++ GD R Q TL LL +DG
Sbjct: 263 ELFELAREKAPSIIFIDEIDAIGARRMRDATSGD------REVQRTLTQLLAEMDGFDPL 316
Query: 321 CGDEKITVFTTNYKDRIDPALLRAGRMDRHINLS 354
D+ + TN KD +DPALLR GR DRHI +
Sbjct: 317 --DDIKVIAATNRKDILDPALLRPGRFDRHIKIP 348
>sp|O34703|YJOB_BACSU Uncharacterized ATPase YjoB OS=Bacillus subtilis (strain 168)
GN=yjoB PE=1 SV=1
Length = 423
Score = 75.9 bits (185), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 82/168 (48%), Gaps = 28/168 (16%)
Query: 187 LVMDGDLKETVLNDLD-CFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY 245
++M+ LK+ + +D F K +Y+ +KRG LLYGPPG GK++L+ ++A ++
Sbjct: 187 VIMNPLLKKEIYRSIDQFFHSDKSFYQTYDIPYKRGILLYGPPGNGKTTLVKSIAGSIDA 246
Query: 246 DIYNLNLSVVTSDSSLEYLLLHVPNR---SILVVEDIDCSIKLQNRESQKGDEPADSYRG 302
+ ++ TS ++E + R ++LV+EDID
Sbjct: 247 PVAYWQITEFTSSETIE-EVFQAARRLAPAVLVIEDIDSM-------------------- 285
Query: 303 PQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALL-RAGRMDR 349
P+ + LN +DG G + TTNY + IDP L+ RAGR DR
Sbjct: 286 PEDVRSFFLNTLDGATSKEG--LFLIGTTNYPEEIDPGLMNRAGRFDR 331
>sp|Q8SQI9|PRS6B_ENCCU 26S protease regulatory subunit 6B homolog OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU08_1970 PE=1 SV=1
Length = 387
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 98/215 (45%), Gaps = 29/215 (13%)
Query: 185 GTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMN 244
G V ++KETV +L + + YR+IG +G LLYGPPGTGK+ L+ A+AN+
Sbjct: 138 GLDVQKQEIKETV--ELPLLQ--SDLYRQIGIDPPQGVLLYGPPGTGKTMLVKAVANHTK 193
Query: 245 YDIYNLNLSVVTSDSSLE--------YLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEP 296
+N S E + L SI+ ++++D SI +++ D
Sbjct: 194 ATFIRVNGSEFVQKYLGEGPRMVRDVFRLAREKAPSIVFIDEVD-SIA-----TKRFDAS 247
Query: 297 ADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYC 356
+ R Q L LLN +DG + + TN D IDPALLR GR+DR I
Sbjct: 248 TSADREVQRVLIELLNQMDGFDPAANVK--VIMATNRADTIDPALLRPGRLDRKIEFPLP 305
Query: 357 TFSTFKQLAANY----LDIND----HDLYCHIEKL 383
K+L N + +ND L C EK+
Sbjct: 306 DRRQ-KRLVFNAITSKMSLNDSVDIESLVCRPEKI 339
>sp|P62193|PRS4_RAT 26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1
PE=2 SV=1
Length = 440
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 87/170 (51%), Gaps = 28/170 (16%)
Query: 209 EYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYL---- 264
EYY ++G +G +LYGPPGTGK+ L A+AN + L VV S+ +YL
Sbjct: 209 EYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF----LRVVGSELIQKYLGDGP 264
Query: 265 -LL---------HVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAI 314
L+ H P SI+ +++ID +I + +S G E R Q T+ LLN +
Sbjct: 265 KLVRELFRVAEEHAP--SIVFIDEID-AIGTKRYDSNSGGE-----REIQRTMLELLNQL 316
Query: 315 DGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQL 364
DG GD K+ + TN + +DPAL+R GR+DR I T K++
Sbjct: 317 DG-FDSRGDVKV-IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRI 364
>sp|P62192|PRS4_MOUSE 26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1
SV=1
Length = 440
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 87/170 (51%), Gaps = 28/170 (16%)
Query: 209 EYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYL---- 264
EYY ++G +G +LYGPPGTGK+ L A+AN + L VV S+ +YL
Sbjct: 209 EYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF----LRVVGSELIQKYLGDGP 264
Query: 265 -LL---------HVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAI 314
L+ H P SI+ +++ID +I + +S G E R Q T+ LLN +
Sbjct: 265 KLVRELFRVAEEHAP--SIVFIDEID-AIGTKRYDSNSGGE-----REIQRTMLELLNQL 316
Query: 315 DGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQL 364
DG GD K+ + TN + +DPAL+R GR+DR I T K++
Sbjct: 317 DG-FDSRGDVKV-IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRI 364
>sp|P62191|PRS4_HUMAN 26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1
SV=1
Length = 440
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 87/170 (51%), Gaps = 28/170 (16%)
Query: 209 EYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYL---- 264
EYY ++G +G +LYGPPGTGK+ L A+AN + L VV S+ +YL
Sbjct: 209 EYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF----LRVVGSELIQKYLGDGP 264
Query: 265 -LL---------HVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAI 314
L+ H P SI+ +++ID +I + +S G E R Q T+ LLN +
Sbjct: 265 KLVRELFRVAEEHAP--SIVFIDEID-AIGTKRYDSNSGGE-----REIQRTMLELLNQL 316
Query: 315 DGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQL 364
DG GD K+ + TN + +DPAL+R GR+DR I T K++
Sbjct: 317 DG-FDSRGDVKV-IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRI 364
>sp|Q90732|PRS4_CHICK 26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2
SV=1
Length = 440
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 85/168 (50%), Gaps = 24/168 (14%)
Query: 209 EYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYL---- 264
EYY ++G +G +LYGPPGTGK+ L A+AN + L VV S+ +YL
Sbjct: 209 EYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF----LRVVGSELIQKYLGDGP 264
Query: 265 -----LLHVPNR---SILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDG 316
L V SI+ +++ID +I + +S G E R Q T+ LLN +DG
Sbjct: 265 KLVRELFRVAEEHGPSIVFIDEID-AIGTKRYDSNSGGE-----REIQRTMLELLNQLDG 318
Query: 317 LLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQL 364
GD K+ + TN + +DPAL+R GR+DR I T K++
Sbjct: 319 -FDSRGDVKV-IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRI 364
>sp|Q9SEI2|PS6AA_ARATH 26S protease regulatory subunit 6A homolog A OS=Arabidopsis
thaliana GN=RPT5A PE=2 SV=1
Length = 424
Score = 72.8 bits (177), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 93/203 (45%), Gaps = 22/203 (10%)
Query: 208 KEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN----LSVVTSDSSL-- 261
KE + K+G +G LLYGPPGTGK+ + A A N L + + D +
Sbjct: 194 KERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLV 253
Query: 262 --EYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLC 319
+ L I+ +++ID +++ D R Q T+ LLN +DG
Sbjct: 254 RDAFQLAKEKAPCIIFIDEIDAI------GTKRFDSEVSGDREVQRTMLELLNQLDGF-- 305
Query: 320 CCGDEKITVF-TTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYC 378
DE+I V TN D +DPAL+R+GR+DR I + T ++ A L I+ +
Sbjct: 306 -SSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPT----EEARARILQIHSRKMNV 360
Query: 379 HIEKLMEKVKVSPAEVAGELMKA 401
H + E++ S + G +KA
Sbjct: 361 HPDVNFEELARSTDDFNGAQLKA 383
>sp|O23894|PRS6A_BRACM 26S protease regulatory subunit 6A homolog OS=Brassica campestris
GN=TBP1 PE=2 SV=1
Length = 424
Score = 72.8 bits (177), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 93/203 (45%), Gaps = 22/203 (10%)
Query: 208 KEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN----LSVVTSDSSL-- 261
KE + K+G +G LLYGPPGTGK+ + A A N L + + D +
Sbjct: 194 KERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLV 253
Query: 262 --EYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLC 319
+ L I+ +++ID +++ D R Q T+ LLN +DG
Sbjct: 254 RDAFQLAKEKAPCIIFIDEIDAI------GTKRFDSEVSGDREVQRTMLELLNQLDGF-- 305
Query: 320 CCGDEKITVF-TTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYC 378
DE+I V TN D +DPAL+R+GR+DR I + T ++ A L I+ +
Sbjct: 306 -SSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPT----EEARARILQIHSRKMNV 360
Query: 379 HIEKLMEKVKVSPAEVAGELMKA 401
H + E++ S + G +KA
Sbjct: 361 HPDVNFEELARSTDDFNGAQLKA 383
>sp|P48601|PRS4_DROME 26S protease regulatory subunit 4 OS=Drosophila melanogaster
GN=Pros26.4 PE=2 SV=2
Length = 439
Score = 72.8 bits (177), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 87/170 (51%), Gaps = 28/170 (16%)
Query: 209 EYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYL---- 264
EYY ++G +G +LYGPPGTGK+ L A+AN + L VV S+ +YL
Sbjct: 208 EYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF----LRVVGSELIQKYLGDGP 263
Query: 265 -LL---------HVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAI 314
L+ H P SI+ +++ID ++ + +S G E R Q T+ LLN +
Sbjct: 264 KLVRELFRVAEEHAP--SIVFIDEID-AVGTKRYDSNSGGE-----REIQRTMLELLNQL 315
Query: 315 DGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQL 364
DG GD K+ + TN + +DPAL+R GR+DR I T +++
Sbjct: 316 DG-FDSRGDVKV-IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRI 363
>sp|Q9SEI4|PRS6B_ARATH 26S protease regulatory subunit 6B homolog OS=Arabidopsis thaliana
GN=RPT3 PE=1 SV=1
Length = 408
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 100/207 (48%), Gaps = 37/207 (17%)
Query: 209 EYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYL---- 264
E Y++IG RG LLYGPPGTGK+ L A+AN+ + VV S+ +YL
Sbjct: 179 ELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF----IRVVGSEFVQKYLGEGP 234
Query: 265 --------LLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDG 316
L +I+ ++++D +I ++Q G AD R Q L LLN +DG
Sbjct: 235 RMVRDVFRLAKENAPAIIFIDEVD-AIATARFDAQTG---AD--REVQRILMELLNQMDG 288
Query: 317 LLCCCGDEKITV---FTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFK---QLAANYLD 370
D+ + V TN D +DPALLR GR+DR I + Q+ + ++
Sbjct: 289 F-----DQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTSKMN 343
Query: 371 INDH-DLYCHIEKLMEKVKVSPAEVAG 396
++D DL ++ + K+S AE+A
Sbjct: 344 LSDEVDLEDYVSR---PDKISAAEIAA 367
>sp|P34123|PRS6B_DICDI 26S protease regulatory subunit 6B homolog OS=Dictyostelium
discoideum GN=psmC4 PE=1 SV=1
Length = 403
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 80/155 (51%), Gaps = 24/155 (15%)
Query: 211 YRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYL------ 264
Y++IG RG LLYGPPGTGK+ L A+A++ + + VV S+ +YL
Sbjct: 176 YKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTSAAF----IRVVGSEFVQKYLGEGPRL 231
Query: 265 ------LLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLL 318
L + +I+ +++ID +I + ++Q G AD R Q L LLN +DG
Sbjct: 232 VRDVFRLARENSPAIIFIDEID-AIATKRFDAQTG---AD--REVQRILMELLNQMDGFD 285
Query: 319 CCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINL 353
+ + TN +D +DPALLR GR+DR I
Sbjct: 286 VSVNVK--VIMATNRQDTLDPALLRPGRLDRKIEF 318
>sp|P85200|PRS6B_HELAN 26S protease regulatory subunit 6B homolog OS=Helianthus annuus
PE=1 SV=1
Length = 414
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 79/161 (49%), Gaps = 30/161 (18%)
Query: 209 EYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYL---- 264
E Y++IG RG LLYGPPGTGK+ L A+AN+ + VV S+ +YL
Sbjct: 185 ELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF----IRVVGSEFVQKYLGEGP 240
Query: 265 --------LLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDG 316
L +I+ ++++D +I ++Q G AD R Q L LLN +DG
Sbjct: 241 RMVRDVFRLAKENAPAIIFIDEVD-AIATARFDAQTG---AD--REVQRILMELLNQMDG 294
Query: 317 LLCCCGDEKITV---FTTNYKDRIDPALLRAGRMDRHINLS 354
D+ + V TN D +DPALLR GR+DR I
Sbjct: 295 F-----DQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFP 330
>sp|O04019|PS6AB_ARATH 26S protease regulatory subunit 6A homolog B OS=Arabidopsis
thaliana GN=RPT5B PE=1 SV=3
Length = 423
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 77/159 (48%), Gaps = 18/159 (11%)
Query: 208 KEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN----LSVVTSDSSL-- 261
KE + K+G +G LLYGPPGTGK+ + A A N L + + D +
Sbjct: 193 KEQFEKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLV 252
Query: 262 --EYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLC 319
+LL + I+ +++ID +++ D R Q T+ LLN +DG
Sbjct: 253 RDAFLLAKEKSPCIIFIDEIDAI------GTKRFDSEVSGDREVQRTMLELLNQLDGF-- 304
Query: 320 CCGDEKITVF-TTNYKDRIDPALLRAGRMDRHINLSYCT 357
D++I V TN D +DPAL+R+GR+DR I + T
Sbjct: 305 -SSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPT 342
>sp|O26824|PAN_METTH Proteasome-activating nucleotidase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=pan PE=3 SV=1
Length = 410
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 84/175 (48%), Gaps = 28/175 (16%)
Query: 192 DLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251
++KETV L + E + KIG +G LLYGPPGTGK+ L A+A+ N
Sbjct: 162 EVKETVELPL----KKPELFEKIGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF---- 213
Query: 252 LSVVTSDSSLEYL------------LLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADS 299
+ +V S+ +Y+ L + SI+ +++ID + + S GD
Sbjct: 214 IKIVASEFVRKYIGEGARLVRGVFELAKEKSPSIIFIDEIDAVAAKRLKSSTSGD----- 268
Query: 300 YRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLS 354
R Q TL LL +DG G+ I V TN D +DPALLR GR DR I +
Sbjct: 269 -REVQRTLMQLLAELDG-FESRGNVGI-VAATNRPDILDPALLRPGRFDRFIEVP 320
>sp|P78578|PRS6B_ASPNG 26S protease regulatory subunit 6B homolog OS=Aspergillus niger
GN=tbpA PE=3 SV=1
Length = 423
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 75/151 (49%), Gaps = 16/151 (10%)
Query: 209 EYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLE------ 262
+ Y++IG RG LLYGPPGTGK+ L+ A+AN +N S E
Sbjct: 190 DLYKQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTTASFIRVNGSEFVQKYLGEGPRMVR 249
Query: 263 --YLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCC 320
+ + + +I+ +++ID I + ++Q G AD R Q L LLN +DG
Sbjct: 250 DVFRMARENSPAIIFIDEIDA-IATKRFDAQTG---AD--REVQRILLELLNQMDGFEQS 303
Query: 321 CGDEKITVFTTNYKDRIDPALLRAGRMDRHI 351
+ + TN D +DPALLR GR+DR I
Sbjct: 304 SNVK--VIMATNRADTLDPALLRPGRLDRKI 332
>sp|Q7UUZ7|FTSH1_RHOBA ATP-dependent zinc metalloprotease FtsH 1 OS=Rhodopirellula baltica
(strain SH1) GN=ftsH1 PE=3 SV=1
Length = 672
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 16/169 (9%)
Query: 198 LNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLS---- 253
L ++ F + E ++K+G +G LL GPPGTGK+ L A+A + +++N S
Sbjct: 209 LQEIVDFLKTPEKFQKLGGQVPKGVLLNGPPGTGKTLLARAVAGEADVPFFSVNGSEFIQ 268
Query: 254 --VVTSDSSLEYLLLHVPNR--SILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAG 309
V S + L + SI+ +++ID + Q+G + + TL
Sbjct: 269 MFVGVGASRVRDLFKTAKEQSPSIIFIDEIDAVGR------QRGAGLGGGHDEREQTLNQ 322
Query: 310 LLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTF 358
+L +DG I + TN D +DPALLR GR DRH+ + T
Sbjct: 323 ILGEMDGF--GGAQAVIVIAATNRPDVLDPALLRPGRFDRHVTVGRPTM 369
>sp|O74894|PRS6B_SCHPO 26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpt3 PE=3 SV=1
Length = 389
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 78/157 (49%), Gaps = 24/157 (15%)
Query: 209 EYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYL---- 264
+ YR+IG RG LLYGPPGTGK+ L+ A+AN + + VV S+ +YL
Sbjct: 158 DLYRQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTAANF----IRVVGSEFVQKYLGEGP 213
Query: 265 --------LLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDG 316
+ +I+ +++ID +I + ++Q G AD R Q L LL +DG
Sbjct: 214 RMVRDVFRMARENAPAIIFIDEID-AIATKRFDAQTG---AD--REVQRILIELLTQMDG 267
Query: 317 LLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINL 353
G + TN D +DPALLR GR+DR I
Sbjct: 268 F--DQGANVKVIMATNRADTLDPALLRPGRLDRKIEF 302
>sp|Q9HGM3|YTA12_SCHPO Mitochondrial respiratory chain complexes assembly protein rca1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=yta12 PE=3 SV=1
Length = 773
Score = 69.7 bits (169), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 76/164 (46%), Gaps = 27/164 (16%)
Query: 204 FRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEY 263
F + ++Y ++G RG +L GPPGTGK+ L A A N + V+ LE
Sbjct: 314 FLKNPKFYERLGAKIPRGAILSGPPGTGKTLLAKATAGEANVPFLS-----VSGSEFLEM 368
Query: 264 LLLHVPNR-------------SILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGL 310
+ P+R I+ +++ID K + R Q G ++ R + TL L
Sbjct: 369 FVGVGPSRVRDLFATARKNAPCIIFIDEIDAIGKARGRGGQFG---SNDER--ESTLNQL 423
Query: 311 LNAIDGLLCCCGDEKITVFT-TNYKDRIDPALLRAGRMDRHINL 353
L +DG E I VF TN D +DPALLR GR DR I +
Sbjct: 424 LVEMDGFTSS---EHIVVFAGTNRPDVLDPALLRPGRFDRQITI 464
>sp|P54778|PRS6B_SOLTU 26S protease regulatory subunit 6B homolog OS=Solanum tuberosum
PE=2 SV=1
Length = 413
Score = 69.3 bits (168), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 79/161 (49%), Gaps = 30/161 (18%)
Query: 209 EYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYL---- 264
E Y++IG RG LLYGPPGTGK+ L A+A++ + VV S+ +YL
Sbjct: 184 ELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAAF----IRVVGSEFVQKYLGEGP 239
Query: 265 --------LLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDG 316
L +I+ ++++D +I ++Q G AD R Q L LLN +DG
Sbjct: 240 RMVRDVFRLAKENAPAIIFIDEVD-AIATARFDAQTG---AD--REVQRILMELLNQMDG 293
Query: 317 LLCCCGDEKITV---FTTNYKDRIDPALLRAGRMDRHINLS 354
D+ + V TN D +DPALLR GR+DR I
Sbjct: 294 F-----DQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFP 329
>sp|A6VHR1|PAN_METM7 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=pan PE=3 SV=1
Length = 407
Score = 69.3 bits (168), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 82/175 (46%), Gaps = 28/175 (16%)
Query: 192 DLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251
D+KE V L + E + K+G V +G LLYGPPGTGK+ L A+A N
Sbjct: 159 DIKEVVELPL----KNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASF---- 210
Query: 252 LSVVTSDSSLEYL------------LLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADS 299
+ VV S+ +++ L + I+ +++ID + GD
Sbjct: 211 VRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGD----- 265
Query: 300 YRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLS 354
R Q TL LL +DG GD KI + TN D +DPA+LR GR DR I +S
Sbjct: 266 -REVQRTLMQLLAEMDG-FDSRGDVKI-IAATNRPDILDPAILRPGRFDRIIEIS 317
>sp|Q0W257|PAN_UNCMA Proteasome-activating nucleotidase OS=Uncultured methanogenic
archaeon RC-I GN=pan PE=3 SV=1
Length = 417
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 92/186 (49%), Gaps = 30/186 (16%)
Query: 192 DLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251
+LKETV +L + E ++K+G +G LLYGPPGTGK+ L A+AN
Sbjct: 170 ELKETV--ELPLLK--PELFQKVGIEPPKGVLLYGPPGTGKTLLAKAVANRTKATF---- 221
Query: 252 LSVVTSDSSLEYL------------LLHVPNRSILVVEDIDCSIKLQNRES-QKGDEPAD 298
+ ++ S+ +Y+ L + SI+ +++ID SI + +S GD
Sbjct: 222 IRIIGSELVQKYIGEGARMVRELFELAKEKSPSIIFIDEID-SIGAKRLDSITSGD---- 276
Query: 299 SYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTF 358
R Q TL LL +DG G+ +I + TN D +DPALLR GR DR I + T
Sbjct: 277 --REVQRTLVQLLAEMDG-FDPRGNVRI-LAATNRPDILDPALLRPGRFDRMIKVPMPTA 332
Query: 359 STFKQL 364
+Q+
Sbjct: 333 EAREQI 338
>sp|Q6LWR0|PAN_METMP Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain S2 / LL) GN=pan PE=3 SV=1
Length = 407
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 82/175 (46%), Gaps = 28/175 (16%)
Query: 192 DLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251
D+KE V L + E + K+G V +G LLYGPPGTGK+ L A+A N
Sbjct: 159 DIKEVVELPL----KNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASF---- 210
Query: 252 LSVVTSDSSLEYL------------LLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADS 299
+ VV S+ +++ L + I+ +++ID + GD
Sbjct: 211 VRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGD----- 265
Query: 300 YRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLS 354
R Q TL LL +DG GD KI + TN D +DPA+LR GR DR I +S
Sbjct: 266 -REVQRTLMQLLAEMDG-FDSRGDVKI-IAATNRPDILDPAILRPGRFDRIIEIS 317
>sp|A6UQT3|PAN_METVS Proteasome-activating nucleotidase OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1
Length = 407
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 82/175 (46%), Gaps = 28/175 (16%)
Query: 192 DLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251
D+KE V L + E + K+G V +G LLYGPPGTGK+ L A+A N
Sbjct: 159 DIKEVVELPL----KNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVARETNASF---- 210
Query: 252 LSVVTSDSSLEYL------------LLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADS 299
+ VV S+ +++ L + I+ +++ID + GD
Sbjct: 211 VRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGD----- 265
Query: 300 YRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLS 354
R Q TL LL +DG GD KI + TN D +DPA+LR GR DR I ++
Sbjct: 266 -REVQRTLMQLLAEMDG-FDSRGDVKI-IAATNRPDILDPAILRPGRFDRIIEIA 317
>sp|A9A916|PAN_METM6 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=pan PE=3 SV=1
Length = 407
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 82/175 (46%), Gaps = 28/175 (16%)
Query: 192 DLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251
D+KE V L + E + K+G V +G LLYGPPGTGK+ L A+A N
Sbjct: 159 DIKEVVELPL----KNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASF---- 210
Query: 252 LSVVTSDSSLEYL------------LLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADS 299
+ VV S+ +++ L + I+ +++ID + GD
Sbjct: 211 VRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGD----- 265
Query: 300 YRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLS 354
R Q TL LL +DG GD KI + TN D +DPA+LR GR DR I +S
Sbjct: 266 -REVQRTLMQLLAEMDG-FDSRGDVKI-IAATNRPDILDPAILRPGRFDRIIEIS 317
>sp|P46507|PRS6B_MANSE 26S protease regulatory subunit 6B OS=Manduca sexta PE=2 SV=1
Length = 415
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 78/158 (49%), Gaps = 24/158 (15%)
Query: 209 EYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYL---- 264
E YR+IG RG L+YGPPG GK+ L A+A++ + VV S+ +YL
Sbjct: 186 ELYRQIGIEPPRGVLMYGPPGCGKTMLANAVAHHTTAAF----IRVVGSEFVQKYLGEGP 241
Query: 265 --------LLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDG 316
L + +I+ +++ID +I + ++Q G AD R Q L LLN +DG
Sbjct: 242 RMVRDVFRLAKENSPAIIFIDEID-AIATKRFDAQTG---AD--REVQRILLELLNQMDG 295
Query: 317 LLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLS 354
+ + TN D +DPALLR GR+DR I
Sbjct: 296 FDQTTNVK--VIMATNRADTLDPALLRPGRLDRKIEFP 331
>sp|A4G0S4|PAN_METM5 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=pan PE=3 SV=1
Length = 407
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 82/175 (46%), Gaps = 28/175 (16%)
Query: 192 DLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251
D+KE V L + E + K+G V +G LLYGPPGTGK+ L A+A N
Sbjct: 159 DIKEVVELPL----KNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASF---- 210
Query: 252 LSVVTSDSSLEYL------------LLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADS 299
+ VV S+ +++ L + I+ +++ID + GD
Sbjct: 211 VRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGD----- 265
Query: 300 YRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLS 354
R Q TL LL +DG GD KI + TN D +DPA+LR GR DR I +S
Sbjct: 266 -REVQRTLMQLLAEMDG-FDSRGDVKI-IAATNRPDILDPAILRPGRFDRIIEIS 317
>sp|Q55BV5|PRS4_DICDI 26S protease regulatory subunit 4 homolog OS=Dictyostelium
discoideum GN=psmC1 PE=1 SV=1
Length = 439
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 84/168 (50%), Gaps = 24/168 (14%)
Query: 209 EYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYL---- 264
E Y +IG +G +LYG PGTGK+ L A+AN + L VV S+ +YL
Sbjct: 208 ELYEEIGIKPPKGVILYGEPGTGKTLLAKAVANQTSATF----LRVVGSELIQKYLGDGP 263
Query: 265 -----LLHVPNR---SILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDG 316
L V + SI+ +++ID ++ + +SQ G E R Q T+ LLN +DG
Sbjct: 264 KLVRELFRVADECAPSIVFIDEID-AVGTKRYDSQSGGE-----REIQRTMLELLNQLDG 317
Query: 317 LLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQL 364
D K+ + TN + +DPAL+R GR+DR I T +++
Sbjct: 318 FDART-DVKV-IMATNRIETLDPALIRPGRIDRKIEFPLPDIKTKRKI 363
>sp|P54776|PRS6A_SOLLC 26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum
GN=TBP1 PE=2 SV=1
Length = 423
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 95/203 (46%), Gaps = 22/203 (10%)
Query: 208 KEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN----LSVVTSDSSL-- 261
+E ++K+G +G LLYGPPGTGK+ + A A N L + + D +
Sbjct: 193 QERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLV 252
Query: 262 --EYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLC 319
+ L + I+ +++ID +++ D R Q T+ LLN +DG
Sbjct: 253 RDAFQLAKEKSPCIIFIDEIDAI------GTKRFDSEVSGDREVQRTMLELLNQLDGF-- 304
Query: 320 CCGDEKITVF-TTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYC 378
D++I V TN D +DPAL+R+GR+DR I + T ++ A L I+ +
Sbjct: 305 -SSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPT----EEARARILQIHSRKMNV 359
Query: 379 HIEKLMEKVKVSPAEVAGELMKA 401
+ + E++ S + G +KA
Sbjct: 360 NPDVNFEELARSTDDFNGAQLKA 382
>sp|P33298|PRS6B_YEAST 26S protease regulatory subunit 6B homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPT3 PE=1
SV=2
Length = 428
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 72/151 (47%), Gaps = 16/151 (10%)
Query: 209 EYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLE------ 262
+ Y +IG RG LLYGPPGTGK+ L+ A+AN +N S E
Sbjct: 196 DLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVR 255
Query: 263 --YLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCC 320
+ L SI+ ++++D SI + ++Q G S R Q L LL +DG
Sbjct: 256 DVFRLARENAPSIIFIDEVD-SIATKRFDAQTG-----SDREVQRILIELLTQMDGFDQS 309
Query: 321 CGDEKITVFTTNYKDRIDPALLRAGRMDRHI 351
+ + TN D +DPALLR GR+DR I
Sbjct: 310 TNVK--VIMATNRADTLDPALLRPGRLDRKI 338
>sp|A6LD25|FTSH_PARD8 ATP-dependent zinc metalloprotease FtsH OS=Parabacteroides
distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)
GN=ftsH PE=3 SV=1
Length = 684
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 93/199 (46%), Gaps = 16/199 (8%)
Query: 179 DHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAA 238
D +TF + + K+ V ++ F + E Y ++G +G LL GPPGTGK+ L A
Sbjct: 190 DRKVTFKDVAGLAEAKQEV-EEIVSFLKNPEKYTELGGKIPKGALLVGPPGTGKTLLAKA 248
Query: 239 MANYMNYDIYNLNLS------VVTSDSSLEYLLLHVPNRS--ILVVEDIDCSIKLQNRES 290
+A N ++L+ S V S + L +S I+ +++ID + + + +
Sbjct: 249 VAGEANVPFFSLSGSDFVEMFVGVGASRVRDLFRQAKEKSPCIVFIDEIDAVGRARGKNA 308
Query: 291 QKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRH 350
+S + TL LL +DG G I + TN D +D ALLRAGR DR
Sbjct: 309 N-----MNSNDERENTLNQLLTEMDGFGSNSG--VIILAATNRADILDKALLRAGRFDRQ 361
Query: 351 INLSYCTFSTFKQLAANYL 369
I++ + K++ +L
Sbjct: 362 IHVELPDLNERKEIFGVHL 380
>sp|O17071|PRS10_CAEEL Probable 26S protease regulatory subunit 10B OS=Caenorhabditis
elegans GN=rpt-4 PE=1 SV=2
Length = 406
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 20/156 (12%)
Query: 209 EYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSD---------- 258
E ++++G +G LL+GPPGTGK+ L A+A+ ++ + + S +
Sbjct: 174 ELFKRVGITPPKGCLLFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIR 233
Query: 259 SSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLL 318
Y H P I+ +++ID + R +G + R Q TL LLN +DG
Sbjct: 234 EMFNYARDHQP--CIVFMDEIDA---IGGRRFSEG---TSADREIQRTLMELLNQLDG-F 284
Query: 319 CCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLS 354
G K+ + TN D +DPALLR GR+DR I +
Sbjct: 285 DSLGKVKV-IMATNRPDTLDPALLRPGRLDRKIEIG 319
>sp|P46465|PRS6A_ORYSJ 26S protease regulatory subunit 6A homolog OS=Oryza sativa subsp.
japonica GN=TBP1 PE=2 SV=2
Length = 429
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 95/203 (46%), Gaps = 22/203 (10%)
Query: 208 KEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN----LSVVTSDSSL-- 261
K+ ++K+G +G LLYGPPGTGK+ + A A N L + + D +
Sbjct: 199 KDRFQKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLV 258
Query: 262 --EYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLC 319
+ L + I+ +++ID +++ D R Q T+ LLN +DG
Sbjct: 259 RDAFQLAKEKSPCIIFIDEIDAI------GTKRFDSEVSGDREVQRTMLELLNQLDGF-- 310
Query: 320 CCGDEKITVF-TTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYC 378
DE+I V TN D +DPAL+R+GR+DR I + + ++ A L I+ +
Sbjct: 311 -SSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPS----EEARARILQIHSRKMNV 365
Query: 379 HIEKLMEKVKVSPAEVAGELMKA 401
+ + E++ S + G +KA
Sbjct: 366 NPDVNFEELARSTDDFNGAQLKA 388
>sp|Q7URM7|FTSH2_RHOBA ATP-dependent zinc metalloprotease FtsH 2 OS=Rhodopirellula baltica
(strain SH1) GN=ftsH2 PE=3 SV=1
Length = 728
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 84/181 (46%), Gaps = 17/181 (9%)
Query: 179 DHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAA 238
D P TF + + + V +D F + E Y+ +G +G LL GPPGTGK+ L A
Sbjct: 245 DLPTTFEDVAGIEEAVDEVREVVD-FLKNSEKYQSLGGRIPKGVLLVGPPGTGKTLLAKA 303
Query: 239 MANYMNYDIYNLNLS------VVTSDSSLEYLLLHVPNRS--ILVVEDIDCSIKLQNRES 290
+A ++L+ S V + + + NR+ I+ ++++D K ++
Sbjct: 304 IAGEAGVPFFSLSGSDFVEMFVGVGAARVRDMFTQAVNRAPCIIFIDELDALGKSRSGSV 363
Query: 291 QKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRH 350
G + + TL LL +DG G I V TN + +DPALLR GR DRH
Sbjct: 364 VGGHDEREQ------TLNALLVEMDGFDSNSG--VIVVAATNRPETLDPALLRPGRFDRH 415
Query: 351 I 351
+
Sbjct: 416 V 416
>sp|Q4R7L3|PRS6B_MACFA 26S protease regulatory subunit 6B OS=Macaca fascicularis GN=PSMC4
PE=2 SV=1
Length = 418
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 79/161 (49%), Gaps = 30/161 (18%)
Query: 209 EYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYL---- 264
E Y++IG RG L+YGPPG GK+ L A+A++ + VV S+ +YL
Sbjct: 189 ELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAF----IRVVGSEFVQKYLGEGP 244
Query: 265 --------LLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDG 316
L +I+ +++ID +I + ++Q G AD R Q L LLN +DG
Sbjct: 245 RMVRDVFRLAKENAPAIIFIDEID-AIATKRFDAQTG---AD--REVQRILLELLNQMDG 298
Query: 317 LLCCCGDEKITV---FTTNYKDRIDPALLRAGRMDRHINLS 354
D+ + V TN D +DPALLR GR+DR I
Sbjct: 299 F-----DQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFP 334
>sp|P43686|PRS6B_HUMAN 26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4 PE=1
SV=2
Length = 418
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 79/161 (49%), Gaps = 30/161 (18%)
Query: 209 EYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYL---- 264
E Y++IG RG L+YGPPG GK+ L A+A++ + VV S+ +YL
Sbjct: 189 ELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAF----IRVVGSEFVQKYLGEGP 244
Query: 265 --------LLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDG 316
L +I+ +++ID +I + ++Q G AD R Q L LLN +DG
Sbjct: 245 RMVRDVFRLAKENAPAIIFIDEID-AIATKRFDAQTG---AD--REVQRILLELLNQMDG 298
Query: 317 LLCCCGDEKITV---FTTNYKDRIDPALLRAGRMDRHINLS 354
D+ + V TN D +DPALLR GR+DR I
Sbjct: 299 F-----DQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFP 334
>sp|Q3T030|PRS6B_BOVIN 26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1
Length = 418
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 79/161 (49%), Gaps = 30/161 (18%)
Query: 209 EYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYL---- 264
E Y++IG RG L+YGPPG GK+ L A+A++ + VV S+ +YL
Sbjct: 189 ELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAF----IRVVGSEFVQKYLGEGP 244
Query: 265 --------LLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDG 316
L +I+ +++ID +I + ++Q G AD R Q L LLN +DG
Sbjct: 245 RMVRDVFRLAKENAPAIIFIDEID-AIATKRFDAQTG---AD--REVQRILLELLNQMDG 298
Query: 317 LLCCCGDEKITV---FTTNYKDRIDPALLRAGRMDRHINLS 354
D+ + V TN D +DPALLR GR+DR I
Sbjct: 299 F-----DQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFP 334
>sp|Q5UR45|YL572_MIMIV Putative AAA family ATPase L572 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L572 PE=3 SV=1
Length = 196
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 96/192 (50%), Gaps = 28/192 (14%)
Query: 235 LIAAMANYMNYDIYNLNLSVVTSDSSLEYLLLHVPNR-SILVVEDIDCS---IKLQNRES 290
+I A++ + I+ L L+ + D+ L LL V + +ILV+EDIDC+ +K + +E
Sbjct: 1 MIKAISTHTKRHIHYLILNNIQDDNELINLLNAVNCKETILVLEDIDCASEAVKSRAKEE 60
Query: 291 QK-----------------GDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNY 333
+ D+ + ++TL+G+LN++DG+ G +I + TTN+
Sbjct: 61 ETVVEKVTDDKSTLENKILADQLKKVEKVSKLTLSGILNSLDGIFNSEG--RIVIMTTNH 118
Query: 334 KDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIN-DHDLYCHIEKLMEKVKVSPA 392
+ +DPAL+R GR+D I S C ++ N+ N D D+ I + SPA
Sbjct: 119 SEVLDPALIRRGRIDMQIEFSNCDRYQIAKMYENFYGKNADSDILSKIPSDI----YSPA 174
Query: 393 EVAGELMKAKGS 404
V+G L+ + +
Sbjct: 175 HVSGLLLSYRNN 186
>sp|Q63570|PRS6B_RAT 26S protease regulatory subunit 6B OS=Rattus norvegicus GN=Psmc4
PE=1 SV=1
Length = 418
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 79/161 (49%), Gaps = 30/161 (18%)
Query: 209 EYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYL---- 264
E Y++IG RG L+YGPPG GK+ L A+A++ + VV S+ +YL
Sbjct: 189 ELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAF----IRVVGSEFVQKYLGEGP 244
Query: 265 --------LLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDG 316
L +I+ +++ID +I + ++Q G AD R Q L LLN +DG
Sbjct: 245 RMVRDVFRLAKENAPAIIFIDEID-AIATKRFDAQTG---AD--REVQRILLELLNQMDG 298
Query: 317 LLCCCGDEKITV---FTTNYKDRIDPALLRAGRMDRHINLS 354
D+ + V TN D +DPALLR GR+DR I
Sbjct: 299 F-----DQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFP 334
>sp|P54775|PRS6B_MOUSE 26S protease regulatory subunit 6B OS=Mus musculus GN=Psmc4 PE=1
SV=2
Length = 418
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 79/161 (49%), Gaps = 30/161 (18%)
Query: 209 EYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYL---- 264
E Y++IG RG L+YGPPG GK+ L A+A++ + VV S+ +YL
Sbjct: 189 ELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAF----IRVVGSEFVQKYLGEGP 244
Query: 265 --------LLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDG 316
L +I+ +++ID +I + ++Q G AD R Q L LLN +DG
Sbjct: 245 RMVRDVFRLAKENAPAIIFIDEID-AIATKRFDAQTG---AD--REVQRILLELLNQMDG 298
Query: 317 LLCCCGDEKITV---FTTNYKDRIDPALLRAGRMDRHINLS 354
D+ + V TN D +DPALLR GR+DR I
Sbjct: 299 F-----DQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFP 334
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 213,230,582
Number of Sequences: 539616
Number of extensions: 8941299
Number of successful extensions: 36432
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 148
Number of HSP's that attempted gapping in prelim test: 34623
Number of HSP's gapped (non-prelim): 1490
length of query: 600
length of database: 191,569,459
effective HSP length: 123
effective length of query: 477
effective length of database: 125,196,691
effective search space: 59718821607
effective search space used: 59718821607
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)