Query 041382
Match_columns 600
No_of_seqs 548 out of 3050
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 06:31:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041382.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041382hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0743 AAA+-type ATPase [Post 100.0 9.3E-88 2E-92 700.3 36.9 417 1-424 4-440 (457)
2 COG1222 RPT1 ATP-dependent 26S 100.0 1.9E-42 4.2E-47 350.1 19.2 235 176-420 142-394 (406)
3 KOG0730 AAA+-type ATPase [Post 100.0 1.3E-38 2.8E-43 343.3 26.6 382 9-416 230-658 (693)
4 KOG0733 Nuclear AAA ATPase (VC 100.0 8.8E-38 1.9E-42 332.0 20.9 308 181-503 186-545 (802)
5 KOG0734 AAA+-type ATPase conta 100.0 4.1E-37 8.8E-42 322.4 17.0 207 180-398 299-514 (752)
6 KOG0733 Nuclear AAA ATPase (VC 100.0 2.3E-36 5.1E-41 321.2 20.7 222 179-416 505-739 (802)
7 KOG0731 AAA+-type ATPase conta 100.0 3.5E-34 7.5E-39 317.8 21.1 232 177-416 303-551 (774)
8 KOG0736 Peroxisome assembly fa 100.0 1.9E-34 4.1E-39 313.5 16.6 215 177-399 664-889 (953)
9 KOG0727 26S proteasome regulat 100.0 6.6E-34 1.4E-38 274.8 17.6 214 178-399 148-370 (408)
10 KOG0728 26S proteasome regulat 100.0 1.7E-33 3.6E-38 271.8 14.2 216 176-399 138-362 (404)
11 KOG0726 26S proteasome regulat 100.0 4.7E-34 1E-38 280.7 10.3 216 176-399 176-400 (440)
12 PTZ00454 26S protease regulato 100.0 6.2E-32 1.3E-36 289.2 22.3 234 177-418 137-386 (398)
13 KOG0738 AAA+-type ATPase [Post 100.0 1.9E-32 4.1E-37 279.0 16.6 225 180-421 207-443 (491)
14 KOG0652 26S proteasome regulat 100.0 4.5E-32 9.7E-37 263.2 14.6 213 176-398 162-385 (424)
15 COG0465 HflB ATP-dependent Zn 100.0 7.7E-32 1.7E-36 294.9 18.2 212 179-399 144-364 (596)
16 KOG0735 AAA+-type ATPase [Post 100.0 3.2E-31 6.9E-36 285.9 21.2 229 175-419 655-894 (952)
17 PRK03992 proteasome-activating 100.0 1.6E-30 3.4E-35 279.3 22.2 237 177-421 123-375 (389)
18 KOG0729 26S proteasome regulat 100.0 2.7E-31 5.9E-36 258.4 13.8 214 176-399 168-392 (435)
19 PTZ00361 26 proteosome regulat 100.0 3.1E-30 6.7E-35 277.9 20.8 235 176-418 174-424 (438)
20 COG1223 Predicted ATPase (AAA+ 100.0 1.4E-30 3.1E-35 252.9 16.0 206 178-399 114-328 (368)
21 KOG0730 AAA+-type ATPase [Post 100.0 2.8E-30 6.1E-35 279.0 19.2 309 180-534 180-505 (693)
22 TIGR03689 pup_AAA proteasome A 100.0 3E-30 6.6E-35 281.4 19.7 207 178-398 175-403 (512)
23 TIGR01241 FtsH_fam ATP-depende 100.0 7.5E-30 1.6E-34 282.8 21.5 232 178-418 48-295 (495)
24 TIGR01243 CDC48 AAA family ATP 100.0 1.1E-29 2.4E-34 293.7 22.7 222 180-416 448-678 (733)
25 KOG0737 AAA+-type ATPase [Post 100.0 1.5E-29 3.3E-34 258.1 17.8 220 181-418 88-319 (386)
26 CHL00195 ycf46 Ycf46; Provisio 100.0 4E-29 8.6E-34 273.0 20.9 205 180-399 223-438 (489)
27 COG0464 SpoVK ATPases of the A 100.0 1.7E-28 3.7E-33 272.3 22.2 210 179-399 236-456 (494)
28 CHL00176 ftsH cell division pr 100.0 1.3E-28 2.8E-33 276.8 21.2 232 178-418 176-423 (638)
29 KOG0739 AAA+-type ATPase [Post 100.0 2E-29 4.4E-34 248.9 11.8 205 180-397 128-342 (439)
30 TIGR01243 CDC48 AAA family ATP 100.0 4.9E-28 1.1E-32 280.0 22.1 330 180-533 173-523 (733)
31 KOG0651 26S proteasome regulat 100.0 5.8E-29 1.3E-33 247.3 12.0 208 181-398 128-346 (388)
32 TIGR01242 26Sp45 26S proteasom 100.0 9E-28 2E-32 256.5 20.4 214 176-399 113-337 (364)
33 PLN00020 ribulose bisphosphate 100.0 2.5E-27 5.3E-32 244.3 19.7 208 179-398 109-339 (413)
34 CHL00206 ycf2 Ycf2; Provisiona 99.9 2.3E-27 4.9E-32 279.5 17.4 178 206-398 1617-1850(2281)
35 PRK10733 hflB ATP-dependent me 99.9 1.5E-26 3.3E-31 262.6 21.1 212 179-399 146-366 (644)
36 PF05278 PEARLI-4: Arabidopsis 99.9 9.2E-27 2E-31 229.6 12.2 101 465-565 83-183 (269)
37 KOG0732 AAA+-type ATPase conta 99.9 9.3E-26 2E-30 256.7 14.7 208 180-398 260-482 (1080)
38 KOG0740 AAA+-type ATPase [Post 99.9 8.2E-25 1.8E-29 231.0 15.3 211 177-399 145-365 (428)
39 KOG0741 AAA+-type ATPase [Post 99.9 2.9E-24 6.2E-29 226.0 12.3 209 179-398 213-448 (744)
40 PF14363 AAA_assoc: Domain ass 99.9 1.7E-21 3.7E-26 168.4 10.5 93 21-116 1-98 (98)
41 KOG0735 AAA+-type ATPase [Post 99.8 4.2E-20 9.2E-25 200.4 14.8 256 218-503 430-701 (952)
42 KOG0736 Peroxisome assembly fa 99.8 6.3E-20 1.4E-24 200.9 14.4 294 217-536 429-744 (953)
43 KOG0742 AAA+-type ATPase [Post 99.8 7.4E-20 1.6E-24 187.8 12.9 213 133-371 298-530 (630)
44 PF00004 AAA: ATPase family as 99.8 1.6E-19 3.5E-24 163.5 11.0 123 222-355 1-132 (132)
45 TIGR03345 VI_ClpV1 type VI sec 99.8 3E-19 6.6E-24 208.1 12.7 205 180-422 182-414 (852)
46 TIGR02639 ClpA ATP-dependent C 99.8 8.8E-19 1.9E-23 202.7 15.9 251 180-548 177-457 (731)
47 PF05496 RuvB_N: Holliday junc 99.8 7.5E-18 1.6E-22 164.2 18.5 192 177-398 16-222 (233)
48 COG0542 clpA ATP-binding subun 99.8 4.9E-19 1.1E-23 199.0 8.9 294 182-546 167-492 (786)
49 PRK10865 protein disaggregatio 99.8 7E-18 1.5E-22 197.3 16.9 204 180-421 173-404 (857)
50 CHL00095 clpC Clp protease ATP 99.8 1E-18 2.2E-23 204.4 9.6 317 182-564 176-525 (821)
51 KOG2004 Mitochondrial ATP-depe 99.7 5.9E-17 1.3E-21 176.6 18.5 200 185-419 411-642 (906)
52 KOG0744 AAA+-type ATPase [Post 99.7 7.1E-18 1.5E-22 169.3 10.5 177 184-369 141-340 (423)
53 PRK00080 ruvB Holliday junctio 99.7 9.5E-17 2.1E-21 169.3 19.7 167 177-373 17-197 (328)
54 TIGR02881 spore_V_K stage V sp 99.7 7.1E-17 1.5E-21 164.8 17.3 171 184-374 5-196 (261)
55 TIGR03346 chaperone_ClpB ATP-d 99.7 1.1E-17 2.3E-22 196.3 12.4 205 179-421 167-399 (852)
56 COG0466 Lon ATP-dependent Lon 99.7 5.9E-17 1.3E-21 177.7 17.1 198 186-419 324-554 (782)
57 PRK11034 clpA ATP-dependent Cl 99.7 4.2E-17 9.1E-22 187.0 15.7 249 183-546 184-459 (758)
58 CHL00181 cbbX CbbX; Provisiona 99.7 2.7E-16 5.8E-21 162.3 19.4 170 185-373 23-213 (287)
59 TIGR00635 ruvB Holliday juncti 99.7 3.1E-16 6.7E-21 163.6 18.2 159 183-371 2-174 (305)
60 TIGR02880 cbbX_cfxQ probable R 99.7 2.1E-16 4.6E-21 163.1 16.3 169 186-373 23-212 (284)
61 PF05673 DUF815: Protein of un 99.7 6.9E-16 1.5E-20 152.4 16.8 172 175-376 17-214 (249)
62 TIGR00763 lon ATP-dependent pr 99.7 6.7E-16 1.4E-20 179.7 19.6 159 186-370 321-506 (775)
63 COG2255 RuvB Holliday junction 99.7 1.4E-15 3.1E-20 150.9 16.8 185 178-392 19-218 (332)
64 PRK04195 replication factor C 99.6 1.8E-15 3.9E-20 167.5 16.4 163 177-373 6-177 (482)
65 COG2256 MGS1 ATPase related to 99.6 2.1E-15 4.5E-20 156.4 13.4 152 178-369 17-176 (436)
66 PRK14962 DNA polymerase III su 99.6 1E-14 2.3E-19 159.8 18.7 156 177-371 6-191 (472)
67 PRK14956 DNA polymerase III su 99.6 5.9E-15 1.3E-19 159.7 15.8 156 177-371 10-195 (484)
68 PRK12323 DNA polymerase III su 99.6 5.3E-15 1.2E-19 163.7 15.4 157 177-372 8-199 (700)
69 PRK07003 DNA polymerase III su 99.6 2.2E-14 4.8E-19 160.7 18.7 157 177-372 8-194 (830)
70 PHA02544 44 clamp loader, smal 99.6 4.8E-14 1E-18 147.8 19.9 159 169-370 9-174 (316)
71 PRK14960 DNA polymerase III su 99.6 3.1E-14 6.7E-19 158.1 18.1 157 177-372 7-193 (702)
72 PLN03025 replication factor C 99.6 2.5E-14 5.4E-19 150.3 16.5 155 177-371 5-173 (319)
73 KOG0989 Replication factor C, 99.6 8.5E-15 1.8E-19 146.9 11.6 158 177-374 28-206 (346)
74 PRK14961 DNA polymerase III su 99.6 6.5E-14 1.4E-18 149.7 19.2 157 177-372 8-194 (363)
75 PRK06645 DNA polymerase III su 99.6 7.3E-14 1.6E-18 153.8 18.7 158 177-373 13-204 (507)
76 PRK14964 DNA polymerase III su 99.6 8.9E-14 1.9E-18 152.1 18.3 158 177-373 5-192 (491)
77 COG0464 SpoVK ATPases of the A 99.6 8.6E-14 1.9E-18 154.8 17.9 292 205-532 4-311 (494)
78 PRK13342 recombination factor 99.5 7.5E-14 1.6E-18 151.7 16.4 152 177-371 4-166 (413)
79 PRK06893 DNA replication initi 99.5 1.2E-13 2.6E-18 138.3 16.6 166 175-373 6-178 (229)
80 PRK14958 DNA polymerase III su 99.5 8.3E-14 1.8E-18 154.2 16.6 157 177-372 8-194 (509)
81 PRK07994 DNA polymerase III su 99.5 1.8E-13 4E-18 153.8 18.7 154 178-370 9-192 (647)
82 TIGR02397 dnaX_nterm DNA polym 99.5 1.6E-13 3.4E-18 146.1 17.2 158 177-373 6-193 (355)
83 PRK14949 DNA polymerase III su 99.5 2.2E-13 4.7E-18 155.5 19.2 156 177-371 8-193 (944)
84 PRK05563 DNA polymerase III su 99.5 2.4E-13 5.2E-18 152.4 19.0 157 178-373 9-195 (559)
85 PRK05896 DNA polymerase III su 99.5 1.8E-13 4E-18 151.8 17.1 156 177-371 8-193 (605)
86 COG2607 Predicted ATPase (AAA+ 99.5 2.9E-13 6.2E-18 131.7 16.2 174 175-376 50-246 (287)
87 PRK10787 DNA-binding ATP-depen 99.5 1.3E-13 2.7E-18 159.7 16.0 160 184-370 320-507 (784)
88 PRK08691 DNA polymerase III su 99.5 1.9E-13 4.1E-18 153.1 16.7 158 177-373 8-195 (709)
89 PRK14963 DNA polymerase III su 99.5 3.7E-13 7.9E-18 148.8 18.7 157 178-373 7-192 (504)
90 PRK14951 DNA polymerase III su 99.5 2.8E-13 6.1E-18 152.0 17.6 157 177-372 8-199 (618)
91 PRK07133 DNA polymerase III su 99.5 2.8E-13 6.1E-18 153.1 17.7 157 177-372 10-193 (725)
92 PRK07940 DNA polymerase III su 99.5 4.1E-13 8.9E-18 144.1 18.0 155 183-367 3-187 (394)
93 PRK14970 DNA polymerase III su 99.5 7.5E-13 1.6E-17 141.8 20.0 158 177-373 9-184 (367)
94 PRK07764 DNA polymerase III su 99.5 3.8E-13 8.3E-18 155.7 18.7 158 177-373 7-196 (824)
95 PRK14952 DNA polymerase III su 99.5 4.9E-13 1.1E-17 149.5 18.6 158 177-373 5-194 (584)
96 PRK14957 DNA polymerase III su 99.5 6.3E-13 1.4E-17 147.4 18.8 156 177-371 8-193 (546)
97 PRK14969 DNA polymerase III su 99.5 3.1E-13 6.6E-18 150.6 16.3 156 177-371 8-193 (527)
98 TIGR02902 spore_lonB ATP-depen 99.5 4.1E-13 8.9E-18 149.9 16.9 186 177-398 57-305 (531)
99 PRK14959 DNA polymerase III su 99.5 5.8E-13 1.3E-17 148.6 17.1 156 177-371 8-193 (624)
100 PRK14953 DNA polymerase III su 99.5 1.1E-12 2.4E-17 144.5 18.0 158 177-373 8-195 (486)
101 PRK12402 replication factor C 99.5 2.7E-13 5.8E-18 143.2 12.6 157 177-373 7-201 (337)
102 PRK14965 DNA polymerase III su 99.5 9.8E-13 2.1E-17 148.2 17.2 156 177-371 8-193 (576)
103 TIGR03420 DnaA_homol_Hda DnaA 99.5 1.2E-12 2.6E-17 130.3 15.7 160 176-371 6-174 (226)
104 PRK06305 DNA polymerase III su 99.5 2.1E-12 4.6E-17 141.4 18.9 156 177-371 9-195 (451)
105 PRK05342 clpX ATP-dependent pr 99.5 1.1E-12 2.4E-17 141.5 16.4 177 183-367 68-323 (412)
106 PRK11034 clpA ATP-dependent Cl 99.4 1.2E-12 2.7E-17 150.5 16.7 159 186-370 459-667 (758)
107 PRK09111 DNA polymerase III su 99.4 1.9E-12 4.1E-17 145.5 17.5 158 177-373 16-208 (598)
108 PRK06647 DNA polymerase III su 99.4 2.8E-12 6.1E-17 143.5 18.8 155 178-371 9-193 (563)
109 TIGR02640 gas_vesic_GvpN gas v 99.4 2.3E-12 5E-17 131.7 16.0 128 220-370 22-199 (262)
110 PRK08451 DNA polymerase III su 99.4 3.8E-12 8.2E-17 140.6 18.7 157 177-372 6-192 (535)
111 PRK14955 DNA polymerase III su 99.4 2E-12 4.4E-17 139.8 16.3 156 177-371 8-201 (397)
112 PRK08903 DnaA regulatory inact 99.4 3.6E-12 7.9E-17 127.3 16.5 159 175-373 8-174 (227)
113 PRK14954 DNA polymerase III su 99.4 4.7E-12 1E-16 142.6 19.0 154 178-370 9-200 (620)
114 TIGR02928 orc1/cdc6 family rep 99.4 3.5E-12 7.7E-17 136.3 17.1 158 184-370 14-213 (365)
115 PRK13341 recombination factor 99.4 9.9E-13 2.1E-17 150.6 13.1 154 177-370 20-182 (725)
116 PRK14948 DNA polymerase III su 99.4 3.7E-12 8.1E-17 144.0 17.2 156 177-371 8-195 (620)
117 PRK14971 DNA polymerase III su 99.4 4.9E-12 1.1E-16 143.1 18.1 157 177-372 9-196 (614)
118 PRK00440 rfc replication facto 99.4 5.7E-12 1.2E-16 131.9 17.4 159 170-372 6-177 (319)
119 PRK14950 DNA polymerase III su 99.4 6E-12 1.3E-16 142.4 18.6 156 177-371 8-194 (585)
120 TIGR00362 DnaA chromosomal rep 99.4 2.7E-12 6E-17 139.3 15.0 191 177-398 102-311 (405)
121 TIGR00382 clpX endopeptidase C 99.4 3E-12 6.4E-17 137.5 14.8 225 183-419 74-381 (413)
122 PRK00149 dnaA chromosomal repl 99.4 2.8E-12 6.2E-17 141.0 15.0 193 176-398 113-323 (450)
123 PRK08727 hypothetical protein; 99.4 5E-12 1.1E-16 127.0 14.8 160 175-371 9-177 (233)
124 TIGR02639 ClpA ATP-dependent C 99.4 1.1E-11 2.5E-16 143.8 17.8 154 186-370 455-663 (731)
125 PTZ00112 origin recognition co 99.4 1.9E-11 4E-16 138.0 18.3 188 185-417 755-988 (1164)
126 PRK08084 DNA replication initi 99.4 2.3E-11 5.1E-16 122.3 17.1 161 176-370 13-181 (235)
127 PRK13407 bchI magnesium chelat 99.4 1.3E-11 2.8E-16 129.6 15.8 157 179-370 2-217 (334)
128 COG2812 DnaX DNA polymerase II 99.3 7.7E-12 1.7E-16 136.6 14.0 156 179-373 10-195 (515)
129 PRK00411 cdc6 cell division co 99.3 1.3E-10 2.9E-15 125.5 22.8 158 183-370 28-221 (394)
130 PRK05642 DNA replication initi 99.3 2.6E-11 5.6E-16 121.8 15.1 163 175-369 9-179 (234)
131 cd00009 AAA The AAA+ (ATPases 99.3 2.4E-11 5.2E-16 110.5 13.2 116 218-355 18-151 (151)
132 PRK14088 dnaA chromosomal repl 99.3 1.4E-11 3.1E-16 134.6 13.6 191 177-398 97-306 (440)
133 TIGR01650 PD_CobS cobaltochela 99.3 1.5E-11 3.3E-16 127.5 12.9 129 219-369 64-233 (327)
134 CHL00081 chlI Mg-protoporyphyr 99.3 7.5E-11 1.6E-15 124.1 17.4 156 180-370 12-233 (350)
135 TIGR02903 spore_lon_C ATP-depe 99.3 5.8E-11 1.3E-15 134.7 17.5 159 178-372 147-369 (615)
136 PRK12422 chromosomal replicati 99.3 4.5E-11 9.8E-16 130.6 16.0 137 220-379 142-294 (445)
137 PRK14086 dnaA chromosomal repl 99.3 3E-11 6.6E-16 134.4 14.5 156 220-398 315-489 (617)
138 PF07728 AAA_5: AAA domain (dy 99.3 5.4E-12 1.2E-16 116.0 7.1 105 221-347 1-139 (139)
139 PF00308 Bac_DnaA: Bacterial d 99.3 6.2E-11 1.4E-15 117.9 15.1 156 221-398 36-209 (219)
140 PRK07471 DNA polymerase III su 99.3 2.6E-10 5.6E-15 121.6 20.0 153 178-369 12-213 (365)
141 PRK05564 DNA polymerase III su 99.3 5.8E-10 1.3E-14 117.0 22.1 149 182-369 1-165 (313)
142 KOG1969 DNA replication checkp 99.3 1.5E-10 3.2E-15 127.6 18.0 196 176-396 262-506 (877)
143 KOG2028 ATPase related to the 99.3 3E-11 6.6E-16 123.5 11.7 152 177-368 130-293 (554)
144 PRK06620 hypothetical protein; 99.3 8E-11 1.7E-15 116.6 14.5 151 176-371 7-162 (214)
145 PRK09112 DNA polymerase III su 99.3 3.4E-10 7.3E-15 120.1 20.1 150 179-367 17-211 (351)
146 PRK10865 protein disaggregatio 99.2 1.7E-10 3.6E-15 135.6 18.9 161 184-370 567-780 (857)
147 COG0714 MoxR-like ATPases [Gen 99.2 1.2E-10 2.6E-15 123.0 14.8 130 219-370 43-204 (329)
148 PHA02244 ATPase-like protein 99.2 1.4E-10 3E-15 121.7 15.0 117 220-360 120-265 (383)
149 TIGR03346 chaperone_ClpB ATP-d 99.2 2.8E-10 6.1E-15 134.1 17.9 160 185-370 565-777 (852)
150 TIGR02030 BchI-ChlI magnesium 99.2 1E-10 2.2E-15 123.1 12.7 153 183-370 2-220 (337)
151 TIGR00678 holB DNA polymerase 99.2 4.4E-10 9.5E-15 109.0 15.5 124 218-368 13-167 (188)
152 PRK14087 dnaA chromosomal repl 99.2 2.4E-10 5.3E-15 125.2 15.0 160 181-371 111-290 (450)
153 COG0542 clpA ATP-binding subun 99.2 3.4E-10 7.4E-15 128.3 16.4 196 185-418 491-750 (786)
154 TIGR00390 hslU ATP-dependent p 99.2 1.5E-10 3.2E-15 123.1 12.6 70 186-255 13-83 (441)
155 CHL00095 clpC Clp protease ATP 99.2 4.3E-10 9.3E-15 132.2 17.4 159 185-370 509-733 (821)
156 COG1474 CDC6 Cdc6-related prot 99.2 9E-10 2E-14 117.3 18.0 191 187-419 19-246 (366)
157 PRK05201 hslU ATP-dependent pr 99.2 1.5E-10 3.1E-15 123.3 11.8 71 186-256 16-87 (443)
158 TIGR03345 VI_ClpV1 type VI sec 99.2 5.6E-10 1.2E-14 130.9 17.5 156 185-370 566-781 (852)
159 KOG1987 Speckle-type POZ prote 99.1 1.8E-10 3.8E-15 119.8 10.4 126 472-598 156-291 (297)
160 PRK09087 hypothetical protein; 99.1 7.5E-10 1.6E-14 110.6 14.0 125 221-378 46-175 (226)
161 PRK11331 5-methylcytosine-spec 99.1 7.6E-10 1.6E-14 119.1 14.2 133 184-355 174-357 (459)
162 PF07724 AAA_2: AAA domain (Cd 99.1 2.1E-10 4.6E-15 109.6 7.5 108 218-334 2-130 (171)
163 PRK08058 DNA polymerase III su 99.1 1.5E-09 3.3E-14 114.6 14.7 146 183-367 3-180 (329)
164 TIGR02442 Cob-chelat-sub cobal 99.1 1.1E-09 2.3E-14 125.2 14.3 153 183-370 2-215 (633)
165 PRK05707 DNA polymerase III su 99.1 5.1E-09 1.1E-13 110.2 17.3 125 218-369 21-178 (328)
166 PRK07399 DNA polymerase III su 99.1 4.5E-09 9.8E-14 110.0 16.8 147 183-369 2-195 (314)
167 PF07726 AAA_3: ATPase family 99.0 3.3E-10 7.1E-15 101.5 6.4 105 221-347 1-129 (131)
168 PRK13531 regulatory ATPase Rav 99.0 2.3E-09 4.9E-14 116.3 13.4 128 219-368 39-193 (498)
169 TIGR00602 rad24 checkpoint pro 99.0 2.1E-09 4.6E-14 121.2 13.7 206 169-415 72-328 (637)
170 COG0470 HolB ATPase involved i 99.0 4.4E-09 9.5E-14 110.2 14.8 143 186-366 2-178 (325)
171 PRK07952 DNA replication prote 99.0 9.7E-10 2.1E-14 110.7 9.0 122 151-282 41-174 (244)
172 smart00382 AAA ATPases associa 99.0 2.9E-09 6.2E-14 95.7 9.8 118 219-356 2-147 (148)
173 smart00350 MCM minichromosome 99.0 6.8E-09 1.5E-13 115.8 14.3 129 221-371 238-402 (509)
174 PRK08116 hypothetical protein; 98.9 7.3E-09 1.6E-13 106.2 12.7 123 219-366 114-257 (268)
175 PF01078 Mg_chelatase: Magnesi 98.9 2.8E-09 6.1E-14 103.6 8.6 46 183-243 1-46 (206)
176 PF13177 DNA_pol3_delta2: DNA 98.9 3.3E-08 7.1E-13 93.7 15.7 112 218-356 18-161 (162)
177 smart00763 AAA_PrkA PrkA AAA d 98.9 2.3E-08 4.9E-13 105.2 15.5 64 182-252 47-118 (361)
178 KOG0991 Replication factor C, 98.9 6.7E-09 1.5E-13 100.9 10.5 187 177-416 19-220 (333)
179 PRK06964 DNA polymerase III su 98.9 2.1E-08 4.5E-13 105.8 15.1 125 217-368 19-203 (342)
180 PF03215 Rad17: Rad17 cell cyc 98.9 3.2E-08 7E-13 109.7 15.7 171 167-370 5-227 (519)
181 PRK08181 transposase; Validate 98.9 7.6E-09 1.6E-13 105.7 9.5 64 219-282 106-179 (269)
182 PRK12377 putative replication 98.9 1.4E-08 3E-13 102.6 10.7 115 220-357 102-236 (248)
183 PRK08939 primosomal protein Dn 98.8 9.5E-09 2.1E-13 107.1 9.8 97 181-282 123-229 (306)
184 PF00158 Sigma54_activat: Sigm 98.8 2.4E-08 5.3E-13 95.1 11.4 127 187-347 1-154 (168)
185 COG1239 ChlI Mg-chelatase subu 98.8 3.1E-08 6.8E-13 104.6 12.8 156 181-371 13-234 (423)
186 TIGR02031 BchD-ChlD magnesium 98.8 2.1E-08 4.6E-13 113.4 12.3 128 220-369 17-174 (589)
187 PRK11608 pspF phage shock prot 98.8 6.5E-08 1.4E-12 102.1 15.2 154 183-370 4-195 (326)
188 COG0593 DnaA ATPase involved i 98.8 1.1E-07 2.4E-12 101.6 16.6 191 177-398 79-287 (408)
189 COG1224 TIP49 DNA helicase TIP 98.8 1.5E-07 3.3E-12 96.8 16.3 63 185-255 39-103 (450)
190 PF06068 TIP49: TIP49 C-termin 98.8 1.1E-07 2.5E-12 99.1 15.6 64 184-255 23-88 (398)
191 PRK04132 replication factor C 98.8 6.7E-08 1.5E-12 111.9 15.0 154 222-415 567-736 (846)
192 TIGR01817 nifA Nif-specific re 98.8 8.7E-08 1.9E-12 107.9 15.4 157 180-370 191-385 (534)
193 TIGR02974 phageshock_pspF psp 98.8 7E-08 1.5E-12 101.9 13.3 149 188-370 2-188 (329)
194 PRK06871 DNA polymerase III su 98.8 9.2E-08 2E-12 100.2 13.7 124 218-368 23-178 (325)
195 PRK11388 DNA-binding transcrip 98.7 1.4E-07 3E-12 108.5 15.5 155 182-370 322-511 (638)
196 PRK07993 DNA polymerase III su 98.7 2.7E-07 5.8E-12 97.5 16.3 124 217-367 22-178 (334)
197 PRK06090 DNA polymerase III su 98.7 1.6E-07 3.5E-12 98.1 14.0 123 218-367 24-178 (319)
198 KOG0741 AAA+-type ATPase [Post 98.7 2.4E-07 5.2E-12 99.4 15.1 135 220-367 539-684 (744)
199 PF01695 IstB_IS21: IstB-like 98.7 6.8E-09 1.5E-13 99.9 3.0 63 219-281 47-119 (178)
200 PRK08769 DNA polymerase III su 98.7 5.2E-07 1.1E-11 94.4 16.7 123 218-367 25-183 (319)
201 PRK08699 DNA polymerase III su 98.7 1.2E-07 2.5E-12 99.8 11.9 124 217-367 19-183 (325)
202 COG1219 ClpX ATP-dependent pro 98.7 1E-07 2.2E-12 96.7 10.6 123 184-318 59-204 (408)
203 PF12775 AAA_7: P-loop contain 98.7 9.5E-08 2.1E-12 98.1 10.7 134 219-370 33-194 (272)
204 KOG1051 Chaperone HSP104 and r 98.7 5.3E-08 1.1E-12 112.2 9.0 153 184-370 185-364 (898)
205 TIGR00368 Mg chelatase-related 98.7 1.2E-07 2.5E-12 105.0 11.4 142 181-359 188-394 (499)
206 PRK06526 transposase; Provisio 98.7 2.5E-08 5.5E-13 101.3 5.5 64 219-282 98-171 (254)
207 TIGR02329 propionate_PrpR prop 98.6 3.2E-07 7E-12 102.3 14.2 158 180-371 207-403 (526)
208 COG1484 DnaC DNA replication p 98.6 1.7E-07 3.7E-12 95.3 10.1 94 181-282 75-179 (254)
209 PRK10820 DNA-binding transcrip 98.6 8E-07 1.7E-11 99.6 16.2 158 180-370 199-393 (520)
210 PRK06835 DNA replication prote 98.6 2.6E-07 5.6E-12 97.2 10.6 105 220-347 184-305 (329)
211 PF14532 Sigma54_activ_2: Sigm 98.6 1.6E-07 3.5E-12 86.4 7.5 126 189-355 2-137 (138)
212 PRK15424 propionate catabolism 98.5 7.3E-07 1.6E-11 99.5 13.6 90 182-283 216-335 (538)
213 PF13173 AAA_14: AAA domain 98.5 2.6E-07 5.6E-12 83.9 8.2 115 220-361 3-127 (128)
214 COG1220 HslU ATP-dependent pro 98.5 1.1E-06 2.3E-11 90.1 13.3 70 186-255 16-86 (444)
215 PRK09862 putative ATP-dependen 98.5 3E-07 6.4E-12 101.6 9.8 140 183-359 189-391 (506)
216 PRK15429 formate hydrogenlyase 98.5 1.2E-06 2.6E-11 101.6 14.3 91 182-283 373-483 (686)
217 PRK06921 hypothetical protein; 98.5 4.1E-07 8.9E-12 93.2 9.2 63 219-281 117-188 (266)
218 PF01637 Arch_ATPase: Archaeal 98.5 2.2E-06 4.7E-11 84.8 13.9 158 219-396 20-233 (234)
219 COG1221 PspF Transcriptional r 98.5 7.9E-07 1.7E-11 94.8 11.2 159 180-370 73-265 (403)
220 PRK09183 transposase/IS protei 98.5 2.5E-07 5.5E-12 94.4 7.1 64 219-282 102-176 (259)
221 KOG1051 Chaperone HSP104 and r 98.5 4.3E-06 9.3E-11 96.7 17.4 122 186-333 563-710 (898)
222 KOG2035 Replication factor C, 98.5 2.2E-06 4.8E-11 85.7 12.7 160 177-376 5-206 (351)
223 KOG0745 Putative ATP-dependent 98.4 8.2E-07 1.8E-11 93.5 10.0 132 219-358 226-388 (564)
224 PHA02624 large T antigen; Prov 98.4 1.3E-06 2.8E-11 96.8 12.0 124 215-354 427-560 (647)
225 KOG0990 Replication factor C, 98.4 5.8E-07 1.3E-11 91.5 8.6 159 169-371 29-205 (360)
226 PF12774 AAA_6: Hydrolytic ATP 98.4 2.4E-06 5.2E-11 85.6 12.8 132 219-370 32-181 (231)
227 TIGR03015 pepcterm_ATPase puta 98.4 1.2E-05 2.7E-10 82.0 18.0 127 221-370 45-206 (269)
228 PRK05022 anaerobic nitric oxid 98.4 2.5E-06 5.5E-11 95.4 13.8 154 183-370 185-376 (509)
229 PF00910 RNA_helicase: RNA hel 98.4 4.2E-07 9.1E-12 80.0 5.5 61 222-282 1-61 (107)
230 COG0606 Predicted ATPase with 98.4 8.6E-07 1.9E-11 95.1 8.5 48 181-243 175-222 (490)
231 KOG2227 Pre-initiation complex 98.4 1.4E-05 3E-10 85.3 17.2 161 184-374 149-343 (529)
232 PTZ00111 DNA replication licen 98.4 2E-06 4.4E-11 99.5 11.3 128 220-369 493-657 (915)
233 KOG1942 DNA helicase, TBP-inte 98.3 1E-05 2.2E-10 81.5 13.8 52 185-244 38-89 (456)
234 PF05621 TniB: Bacterial TniB 98.3 1.2E-05 2.6E-10 82.5 14.8 184 144-370 9-228 (302)
235 PF05729 NACHT: NACHT domain 98.3 4.1E-06 8.9E-11 78.3 10.5 134 221-371 2-165 (166)
236 PRK05818 DNA polymerase III su 98.3 2.5E-05 5.4E-10 78.9 16.1 113 217-356 5-147 (261)
237 PF13401 AAA_22: AAA domain; P 98.3 2.5E-06 5.4E-11 77.0 8.2 37 220-256 5-49 (131)
238 PRK05917 DNA polymerase III su 98.3 6.4E-06 1.4E-10 84.8 11.9 112 218-356 18-154 (290)
239 COG3829 RocR Transcriptional r 98.2 3E-06 6.5E-11 92.2 8.7 135 178-347 238-401 (560)
240 TIGR02915 PEP_resp_reg putativ 98.2 1.2E-05 2.7E-10 88.4 13.7 89 183-283 137-246 (445)
241 PRK10923 glnG nitrogen regulat 98.2 1.4E-05 2.9E-10 88.7 14.1 155 183-370 136-327 (469)
242 PRK07132 DNA polymerase III su 98.2 1.9E-05 4E-10 82.1 13.7 123 218-367 17-160 (299)
243 TIGR01818 ntrC nitrogen regula 98.2 2.3E-05 5E-10 86.6 14.8 152 185-370 134-323 (463)
244 KOG1514 Origin recognition com 98.2 5.5E-05 1.2E-09 84.3 17.3 166 221-418 424-628 (767)
245 KOG1970 Checkpoint RAD17-RFC c 98.2 2.4E-05 5.3E-10 84.9 13.9 74 168-251 69-142 (634)
246 PRK13406 bchD magnesium chelat 98.2 7.5E-06 1.6E-10 92.3 10.5 119 220-360 26-173 (584)
247 TIGR00764 lon_rel lon-related 98.2 2.4E-05 5.2E-10 89.1 14.5 50 182-246 15-64 (608)
248 KOG1968 Replication factor C, 98.1 5.6E-06 1.2E-10 96.4 8.7 171 177-372 312-505 (871)
249 PRK11361 acetoacetate metaboli 98.1 2.2E-05 4.8E-10 86.5 13.0 89 184-283 142-250 (457)
250 PRK07276 DNA polymerase III su 98.1 0.00014 3E-09 75.2 17.3 119 218-366 23-172 (290)
251 PLN03210 Resistant to P. syrin 98.1 6.7E-05 1.4E-09 92.1 16.8 153 177-371 176-366 (1153)
252 PHA02774 E1; Provisional 98.1 2.5E-05 5.4E-10 86.5 11.3 58 215-279 430-488 (613)
253 PF03969 AFG1_ATPase: AFG1-lik 98.0 4.9E-06 1.1E-10 88.7 5.0 95 216-333 59-167 (362)
254 PRK15115 response regulator Gl 98.0 4.7E-05 1E-09 83.7 12.7 63 220-283 158-241 (444)
255 PF05707 Zot: Zonular occluden 97.9 4.4E-05 9.6E-10 74.4 9.1 114 222-356 3-146 (193)
256 PHA00729 NTP-binding motif con 97.9 1.6E-05 3.4E-10 78.9 5.7 27 221-247 19-45 (226)
257 cd01120 RecA-like_NTPases RecA 97.9 8.2E-05 1.8E-09 69.0 9.9 63 222-284 2-99 (165)
258 PF00931 NB-ARC: NB-ARC domain 97.8 0.00017 3.8E-09 74.1 12.7 125 218-372 18-173 (287)
259 PRK15455 PrkA family serine pr 97.8 2.5E-05 5.4E-10 86.5 6.4 67 179-252 70-137 (644)
260 PF13207 AAA_17: AAA domain; P 97.8 1.3E-05 2.8E-10 71.5 3.4 31 222-252 2-32 (121)
261 TIGR02237 recomb_radB DNA repa 97.8 7.4E-05 1.6E-09 73.5 9.1 40 215-254 8-50 (209)
262 PRK10365 transcriptional regul 97.8 0.00017 3.6E-09 79.2 12.4 86 186-283 140-246 (441)
263 COG2204 AtoC Response regulato 97.8 0.00022 4.8E-09 77.7 12.9 195 183-420 139-372 (464)
264 KOG0478 DNA replication licens 97.8 9.3E-05 2E-09 82.2 9.7 158 186-367 430-624 (804)
265 TIGR01618 phage_P_loop phage n 97.8 5.4E-05 1.2E-09 75.1 7.1 22 220-241 13-34 (220)
266 COG5271 MDN1 AAA ATPase contai 97.7 0.00031 6.7E-09 84.0 13.5 125 219-370 1543-1704(4600)
267 COG3604 FhlA Transcriptional r 97.7 0.00021 4.5E-09 77.2 10.8 90 182-282 220-329 (550)
268 PRK00131 aroK shikimate kinase 97.7 3.6E-05 7.9E-10 72.9 4.4 34 218-251 3-36 (175)
269 KOG2680 DNA helicase TIP49, TB 97.7 0.00029 6.3E-09 71.4 10.5 43 334-379 339-381 (454)
270 PF00493 MCM: MCM2/3/5 family 97.6 2.3E-05 5E-10 82.9 2.6 162 186-371 25-223 (331)
271 PRK07261 topology modulation p 97.6 0.00015 3.2E-09 69.4 7.6 100 222-370 3-102 (171)
272 TIGR02688 conserved hypothetic 97.6 0.00056 1.2E-08 73.5 12.1 151 220-398 210-374 (449)
273 PRK08118 topology modulation p 97.6 6.2E-05 1.3E-09 71.7 3.8 100 221-370 3-102 (167)
274 KOG2228 Origin recognition com 97.6 0.00043 9.3E-09 71.5 10.0 156 186-372 25-222 (408)
275 TIGR02012 tigrfam_recA protein 97.5 0.00037 8.1E-09 73.0 9.7 113 215-332 51-190 (321)
276 PRK14722 flhF flagellar biosyn 97.5 0.00035 7.5E-09 74.7 9.5 105 219-343 137-268 (374)
277 COG1373 Predicted ATPase (AAA+ 97.5 0.00087 1.9E-08 72.7 12.3 125 211-363 30-161 (398)
278 cd00983 recA RecA is a bacter 97.5 0.00051 1.1E-08 72.0 9.7 113 215-332 51-190 (325)
279 KOG2170 ATPase of the AAA+ sup 97.5 0.00024 5.1E-09 72.3 6.8 92 186-283 83-191 (344)
280 PF06309 Torsin: Torsin; Inte 97.5 0.0002 4.3E-09 64.4 5.6 52 186-243 26-77 (127)
281 cd01394 radB RadB. The archaea 97.5 0.00051 1.1E-08 68.0 9.0 39 215-253 15-56 (218)
282 PF14516 AAA_35: AAA-like doma 97.5 0.0016 3.5E-08 68.9 13.3 132 219-369 31-214 (331)
283 PRK09361 radB DNA repair and r 97.4 0.00049 1.1E-08 68.5 8.8 39 215-253 19-60 (225)
284 cd01124 KaiC KaiC is a circadi 97.4 0.00073 1.6E-08 64.8 9.7 31 222-252 2-35 (187)
285 PRK03839 putative kinase; Prov 97.4 0.00011 2.4E-09 70.5 3.8 30 222-251 3-32 (180)
286 cd00464 SK Shikimate kinase (S 97.4 0.00013 2.9E-09 67.7 4.1 31 221-251 1-31 (154)
287 PF13604 AAA_30: AAA domain; P 97.4 0.002 4.3E-08 63.0 12.4 90 220-333 19-132 (196)
288 PRK13947 shikimate kinase; Pro 97.4 0.00014 3E-09 69.0 4.1 32 221-252 3-34 (171)
289 PRK05973 replicative DNA helic 97.4 0.00078 1.7E-08 67.7 9.5 38 215-252 60-100 (237)
290 PF05272 VirE: Virulence-assoc 97.4 0.00042 9.1E-09 67.8 7.3 113 215-355 48-169 (198)
291 PRK00625 shikimate kinase; Pro 97.4 0.00014 3.1E-09 69.6 3.9 31 221-251 2-32 (173)
292 PRK09376 rho transcription ter 97.4 0.0017 3.7E-08 69.3 12.3 25 221-245 171-195 (416)
293 COG0703 AroK Shikimate kinase 97.4 0.00014 3E-09 69.0 3.5 33 220-252 3-35 (172)
294 PRK13949 shikimate kinase; Pro 97.4 0.00015 3.3E-09 69.1 3.9 31 221-251 3-33 (169)
295 COG1485 Predicted ATPase [Gene 97.4 0.0003 6.6E-09 73.2 6.2 122 216-371 62-198 (367)
296 COG5245 DYN1 Dynein, heavy cha 97.4 0.0004 8.7E-09 82.4 7.7 141 216-371 1491-1660(3164)
297 PRK06067 flagellar accessory p 97.4 0.0013 2.8E-08 66.0 10.7 38 215-252 21-61 (234)
298 COG1241 MCM2 Predicted ATPase 97.4 0.00034 7.4E-09 79.5 7.0 161 185-369 286-483 (682)
299 PRK12723 flagellar biosynthesi 97.3 0.0018 4E-08 69.7 12.3 26 218-243 173-198 (388)
300 PF13671 AAA_33: AAA domain; P 97.3 0.0001 2.2E-09 67.5 2.3 26 222-247 2-27 (143)
301 PF08740 BCS1_N: BCS1 N termin 97.3 0.012 2.7E-07 56.8 16.9 132 40-187 26-187 (187)
302 KOG0480 DNA replication licens 97.3 0.0005 1.1E-08 76.0 7.6 163 184-371 344-544 (764)
303 cd01128 rho_factor Transcripti 97.3 0.0019 4.2E-08 65.5 11.4 27 219-245 16-42 (249)
304 PF06431 Polyoma_lg_T_C: Polyo 97.3 0.0014 3E-08 68.6 10.4 137 194-354 138-284 (417)
305 PF13191 AAA_16: AAA ATPase do 97.3 0.00013 2.7E-09 69.7 2.6 59 187-255 2-63 (185)
306 PTZ00088 adenylate kinase 1; P 97.3 0.0016 3.4E-08 65.3 10.5 31 221-251 8-38 (229)
307 cd01123 Rad51_DMC1_radA Rad51_ 97.3 0.00099 2.1E-08 66.6 9.2 40 215-254 15-63 (235)
308 TIGR00767 rho transcription te 97.3 0.002 4.2E-08 69.2 11.6 26 219-244 168-193 (415)
309 COG1618 Predicted nucleotide k 97.3 0.0013 2.8E-08 61.3 8.9 24 220-243 6-29 (179)
310 cd01393 recA_like RecA is a b 97.3 0.0011 2.3E-08 65.9 9.1 40 215-254 15-63 (226)
311 PRK06581 DNA polymerase III su 97.3 0.0054 1.2E-07 61.2 13.6 124 220-370 16-162 (263)
312 PRK13948 shikimate kinase; Pro 97.3 0.00028 6E-09 68.2 4.5 35 217-251 8-42 (182)
313 PRK12608 transcription termina 97.3 0.0034 7.3E-08 66.9 12.9 24 221-244 135-158 (380)
314 PTZ00202 tuzin; Provisional 97.3 0.017 3.6E-07 62.6 17.8 64 180-253 257-320 (550)
315 TIGR01359 UMP_CMP_kin_fam UMP- 97.2 0.00025 5.4E-09 68.1 3.9 28 222-249 2-29 (183)
316 PRK06217 hypothetical protein; 97.2 0.00027 5.9E-09 68.2 4.1 31 221-251 3-33 (183)
317 COG0563 Adk Adenylate kinase a 97.2 0.00039 8.5E-09 66.9 5.1 30 221-252 2-31 (178)
318 PF08298 AAA_PrkA: PrkA AAA do 97.2 0.0017 3.7E-08 68.2 10.0 64 183-253 58-123 (358)
319 PRK14532 adenylate kinase; Pro 97.2 0.00029 6.2E-09 68.1 3.9 30 221-250 2-31 (188)
320 cd02020 CMPK Cytidine monophos 97.2 0.00031 6.8E-09 64.5 3.8 30 222-251 2-31 (147)
321 cd02021 GntK Gluconate kinase 97.2 0.00031 6.7E-09 65.2 3.8 28 222-249 2-29 (150)
322 KOG3347 Predicted nucleotide k 97.2 0.0003 6.6E-09 64.5 3.5 45 220-266 8-52 (176)
323 COG4619 ABC-type uncharacteriz 97.2 0.0017 3.6E-08 61.1 8.4 25 219-243 29-53 (223)
324 PRK14531 adenylate kinase; Pro 97.2 0.00035 7.5E-09 67.4 4.2 31 220-250 3-33 (183)
325 PRK13765 ATP-dependent proteas 97.2 0.00065 1.4E-08 77.5 6.8 52 178-244 24-75 (637)
326 PRK05800 cobU adenosylcobinami 97.2 0.00087 1.9E-08 64.0 6.6 64 221-284 3-90 (170)
327 PRK08233 hypothetical protein; 97.2 0.0027 5.8E-08 60.6 10.1 32 221-252 5-37 (182)
328 cd03281 ABC_MSH5_euk MutS5 hom 97.2 0.0018 3.8E-08 64.3 9.0 22 220-241 30-51 (213)
329 cd01121 Sms Sms (bacterial rad 97.2 0.0024 5.1E-08 68.6 10.6 69 215-283 78-171 (372)
330 PRK11823 DNA repair protein Ra 97.2 0.0023 5E-08 70.4 10.8 70 215-284 76-170 (446)
331 TIGR01313 therm_gnt_kin carboh 97.1 0.00035 7.6E-09 65.8 3.7 28 222-249 1-28 (163)
332 PRK09354 recA recombinase A; P 97.1 0.0017 3.8E-08 68.6 9.2 70 215-284 56-152 (349)
333 cd01428 ADK Adenylate kinase ( 97.1 0.00039 8.4E-09 67.2 3.9 29 222-250 2-30 (194)
334 PRK13946 shikimate kinase; Pro 97.1 0.00041 8.9E-09 67.0 3.8 33 219-251 10-42 (184)
335 PRK05057 aroK shikimate kinase 97.1 0.00048 1E-08 65.9 4.2 33 220-252 5-37 (172)
336 TIGR03499 FlhF flagellar biosy 97.1 0.0021 4.5E-08 66.5 9.0 36 219-254 194-234 (282)
337 PLN02674 adenylate kinase 97.1 0.00073 1.6E-08 68.2 5.3 30 220-249 32-61 (244)
338 PF00437 T2SE: Type II/IV secr 97.1 0.0012 2.6E-08 67.7 7.0 90 180-280 99-207 (270)
339 COG1102 Cmk Cytidylate kinase 97.1 0.00049 1.1E-08 64.1 3.6 28 222-249 3-30 (179)
340 PRK14737 gmk guanylate kinase; 97.1 0.0028 6.1E-08 61.5 9.1 27 218-244 3-29 (186)
341 PRK08154 anaerobic benzoate ca 97.1 0.0011 2.4E-08 69.5 6.7 57 190-251 109-165 (309)
342 PRK03731 aroL shikimate kinase 97.0 0.0006 1.3E-08 64.8 4.2 31 221-251 4-34 (171)
343 PRK14530 adenylate kinase; Pro 97.0 0.00058 1.3E-08 67.6 4.2 30 221-250 5-34 (215)
344 cd00227 CPT Chloramphenicol (C 97.0 0.0005 1.1E-08 65.8 3.5 32 220-251 3-34 (175)
345 PRK06762 hypothetical protein; 97.0 0.00075 1.6E-08 63.8 4.5 32 220-251 3-34 (166)
346 PF04665 Pox_A32: Poxvirus A32 97.0 0.018 3.9E-07 57.9 14.4 124 219-370 13-171 (241)
347 PF13245 AAA_19: Part of AAA d 97.0 0.001 2.2E-08 54.7 4.6 32 221-252 12-50 (76)
348 PRK06547 hypothetical protein; 97.0 0.00081 1.7E-08 64.4 4.5 34 218-251 14-47 (172)
349 COG1855 ATPase (PilT family) [ 97.0 0.00077 1.7E-08 71.9 4.5 45 182-244 244-288 (604)
350 COG3283 TyrR Transcriptional r 97.0 0.0069 1.5E-07 63.2 11.3 128 175-333 194-343 (511)
351 PRK14528 adenylate kinase; Pro 96.9 0.00074 1.6E-08 65.4 4.0 30 221-250 3-32 (186)
352 PRK14529 adenylate kinase; Pro 96.9 0.0015 3.2E-08 65.1 6.2 28 222-249 3-30 (223)
353 TIGR01360 aden_kin_iso1 adenyl 96.9 0.0008 1.7E-08 64.6 4.1 29 221-249 5-33 (188)
354 PRK02496 adk adenylate kinase; 96.9 0.00074 1.6E-08 65.0 3.7 29 222-250 4-32 (184)
355 cd00267 ABC_ATPase ABC (ATP-bi 96.9 0.0016 3.5E-08 61.0 5.9 27 218-244 24-50 (157)
356 PF07693 KAP_NTPase: KAP famil 96.9 0.0083 1.8E-07 62.9 11.8 30 217-246 18-47 (325)
357 COG1116 TauB ABC-type nitrate/ 96.9 0.0054 1.2E-07 61.4 9.7 23 221-243 31-53 (248)
358 COG4650 RtcR Sigma54-dependent 96.9 0.0021 4.6E-08 65.1 6.7 65 219-283 208-295 (531)
359 COG4088 Predicted nucleotide k 96.9 0.0026 5.6E-08 61.6 6.9 25 221-245 3-27 (261)
360 PRK04841 transcriptional regul 96.9 0.035 7.6E-07 66.6 18.2 148 220-396 33-224 (903)
361 TIGR02858 spore_III_AA stage I 96.9 0.0036 7.8E-08 64.3 8.4 25 220-244 112-136 (270)
362 TIGR01351 adk adenylate kinase 96.9 0.00093 2E-08 65.9 3.9 29 222-250 2-30 (210)
363 PLN02200 adenylate kinase fami 96.8 0.0011 2.4E-08 66.6 4.5 34 219-254 43-76 (234)
364 PRK05703 flhF flagellar biosyn 96.8 0.015 3.3E-07 63.6 13.6 36 219-254 221-261 (424)
365 cd02019 NK Nucleoside/nucleoti 96.8 0.0016 3.5E-08 52.3 4.6 30 222-251 2-32 (69)
366 COG1936 Predicted nucleotide k 96.8 0.00076 1.6E-08 63.6 2.9 30 221-251 2-31 (180)
367 cd03283 ABC_MutS-like MutS-lik 96.8 0.0036 7.8E-08 61.3 7.9 62 219-280 25-115 (199)
368 PRK00279 adk adenylate kinase; 96.8 0.001 2.2E-08 65.9 4.0 29 222-250 3-31 (215)
369 PF00519 PPV_E1_C: Papillomavi 96.8 0.0014 2.9E-08 69.4 4.8 115 215-357 258-384 (432)
370 cd00544 CobU Adenosylcobinamid 96.8 0.0043 9.3E-08 59.2 7.8 63 222-284 2-87 (169)
371 KOG2543 Origin recognition com 96.8 0.011 2.3E-07 62.3 11.1 151 186-368 7-192 (438)
372 PF13479 AAA_24: AAA domain 96.8 0.002 4.4E-08 63.7 5.7 60 221-284 5-82 (213)
373 PRK14527 adenylate kinase; Pro 96.8 0.001 2.2E-08 64.5 3.4 31 219-249 6-36 (191)
374 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.7 0.0032 7E-08 58.3 6.4 65 217-283 24-101 (144)
375 PF13238 AAA_18: AAA domain; P 96.7 0.00096 2.1E-08 59.5 2.6 22 222-243 1-22 (129)
376 PRK04040 adenylate kinase; Pro 96.7 0.0014 3.1E-08 63.6 3.9 29 220-248 3-33 (188)
377 PRK04182 cytidylate kinase; Pr 96.7 0.0015 3.2E-08 62.2 3.9 29 221-249 2-30 (180)
378 cd00046 DEXDc DEAD-like helica 96.7 0.003 6.6E-08 56.1 5.5 23 221-243 2-24 (144)
379 cd01129 PulE-GspE PulE/GspE Th 96.7 0.0057 1.2E-07 62.7 8.2 86 181-280 56-159 (264)
380 PRK06696 uridine kinase; Valid 96.7 0.0056 1.2E-07 61.0 7.9 43 219-261 22-67 (223)
381 PF00406 ADK: Adenylate kinase 96.7 0.0011 2.3E-08 61.8 2.5 26 224-249 1-26 (151)
382 PLN02199 shikimate kinase 96.7 0.0033 7.2E-08 64.8 6.3 33 219-251 102-134 (303)
383 TIGR02173 cyt_kin_arch cytidyl 96.6 0.0017 3.8E-08 61.2 3.9 29 222-250 3-31 (171)
384 KOG3354 Gluconate kinase [Carb 96.6 0.0025 5.5E-08 58.9 4.7 50 217-268 10-59 (191)
385 PTZ00035 Rad51 protein; Provis 96.6 0.0075 1.6E-07 64.0 9.0 40 215-254 114-162 (337)
386 TIGR02238 recomb_DMC1 meiotic 96.6 0.0055 1.2E-07 64.3 7.9 40 215-254 92-140 (313)
387 PRK11889 flhF flagellar biosyn 96.6 0.023 5E-07 61.0 12.5 59 191-253 217-278 (436)
388 PRK01184 hypothetical protein; 96.6 0.0018 3.8E-08 62.3 3.8 29 221-250 3-31 (184)
389 cd03216 ABC_Carb_Monos_I This 96.6 0.0041 8.9E-08 58.8 6.2 27 217-243 24-50 (163)
390 PRK04296 thymidine kinase; Pro 96.6 0.016 3.4E-07 56.4 10.4 30 221-250 4-36 (190)
391 PF02367 UPF0079: Uncharacteri 96.6 0.0045 9.8E-08 55.8 6.1 65 218-282 14-100 (123)
392 TIGR02782 TrbB_P P-type conjug 96.6 0.0048 1E-07 64.4 7.2 25 219-243 132-156 (299)
393 PF13086 AAA_11: AAA domain; P 96.6 0.0014 3E-08 64.7 3.0 22 222-243 20-41 (236)
394 PRK09519 recA DNA recombinatio 96.6 0.0076 1.6E-07 69.9 9.4 70 215-284 56-152 (790)
395 cd03247 ABCC_cytochrome_bd The 96.6 0.013 2.8E-07 56.2 9.6 27 217-243 26-52 (178)
396 TIGR00150 HI0065_YjeE ATPase, 96.6 0.0023 4.9E-08 58.5 4.1 29 218-246 21-49 (133)
397 PLN03187 meiotic recombination 96.6 0.0078 1.7E-07 63.8 8.7 40 215-254 122-170 (344)
398 KOG2383 Predicted ATPase [Gene 96.6 0.0019 4.1E-08 68.2 4.0 25 217-241 112-136 (467)
399 COG3854 SpoIIIAA ncharacterize 96.6 0.0049 1.1E-07 60.8 6.4 23 221-243 139-161 (308)
400 PF13521 AAA_28: AAA domain; P 96.5 0.0015 3.3E-08 61.5 2.8 26 222-248 2-27 (163)
401 cd02027 APSK Adenosine 5'-phos 96.5 0.0027 5.9E-08 59.2 4.3 30 222-251 2-34 (149)
402 PHA00350 putative assembly pro 96.5 0.015 3.3E-07 62.6 10.4 119 221-350 3-159 (399)
403 COG5271 MDN1 AAA ATPase contai 96.5 0.034 7.3E-07 67.7 13.7 130 221-370 890-1048(4600)
404 PRK14526 adenylate kinase; Pro 96.5 0.0024 5.1E-08 63.2 3.9 28 222-249 3-30 (211)
405 TIGR00416 sms DNA repair prote 96.5 0.0083 1.8E-07 66.2 8.6 69 215-283 90-183 (454)
406 PF01745 IPT: Isopentenyl tran 96.5 0.0024 5.2E-08 62.4 3.8 36 221-256 3-38 (233)
407 PHA02530 pseT polynucleotide k 96.5 0.0023 4.9E-08 66.6 4.0 28 220-247 3-31 (300)
408 cd03222 ABC_RNaseL_inhibitor T 96.5 0.0049 1.1E-07 59.3 5.9 66 218-283 24-102 (177)
409 TIGR01613 primase_Cterm phage/ 96.5 0.0075 1.6E-07 63.1 7.8 81 190-280 54-138 (304)
410 smart00487 DEXDc DEAD-like hel 96.5 0.017 3.6E-07 54.7 9.7 24 220-243 25-49 (201)
411 PF10236 DAP3: Mitochondrial r 96.5 0.097 2.1E-06 54.9 16.0 98 270-371 156-279 (309)
412 PLN02459 probable adenylate ki 96.5 0.007 1.5E-07 61.6 7.0 29 221-249 31-59 (261)
413 COG3267 ExeA Type II secretory 96.4 0.12 2.5E-06 52.1 15.2 133 218-371 49-215 (269)
414 TIGR03574 selen_PSTK L-seryl-t 96.4 0.003 6.6E-08 64.0 4.3 30 222-251 2-34 (249)
415 PF08433 KTI12: Chromatin asso 96.4 0.0035 7.7E-08 64.3 4.7 62 222-283 4-83 (270)
416 cd03243 ABC_MutS_homologs The 96.4 0.0076 1.7E-07 59.0 6.7 62 220-281 30-119 (202)
417 PRK10078 ribose 1,5-bisphospho 96.4 0.0027 5.9E-08 61.3 3.5 29 221-249 4-32 (186)
418 cd03287 ABC_MSH3_euk MutS3 hom 96.4 0.015 3.2E-07 58.1 8.7 62 219-280 31-120 (222)
419 COG2874 FlaH Predicted ATPases 96.3 0.022 4.8E-07 55.7 9.4 117 207-343 14-176 (235)
420 PF12780 AAA_8: P-loop contain 96.3 0.0077 1.7E-07 61.8 6.6 83 186-279 9-98 (268)
421 cd03228 ABCC_MRP_Like The MRP 96.3 0.0083 1.8E-07 57.1 6.5 27 217-243 26-52 (171)
422 TIGR03878 thermo_KaiC_2 KaiC d 96.3 0.0042 9E-08 63.5 4.6 39 215-253 32-73 (259)
423 PF06745 KaiC: KaiC; InterPro 96.3 0.0038 8.2E-08 62.2 4.2 38 215-252 15-56 (226)
424 PRK05541 adenylylsulfate kinas 96.3 0.0046 1E-07 59.0 4.6 26 219-244 7-32 (176)
425 PF10443 RNA12: RNA12 protein; 96.3 0.075 1.6E-06 57.4 14.1 44 326-371 186-231 (431)
426 PRK12339 2-phosphoglycerate ki 96.3 0.0043 9.3E-08 60.7 4.4 28 220-247 4-31 (197)
427 PRK00889 adenylylsulfate kinas 96.3 0.0049 1.1E-07 58.8 4.7 34 219-252 4-40 (175)
428 PRK12727 flagellar biosynthesi 96.3 0.02 4.4E-07 63.6 10.0 26 218-243 349-374 (559)
429 PRK00771 signal recognition pa 96.3 0.012 2.6E-07 64.4 8.3 62 193-255 70-134 (437)
430 TIGR03877 thermo_KaiC_1 KaiC d 96.3 0.0056 1.2E-07 61.6 5.1 40 215-254 17-59 (237)
431 PRK10436 hypothetical protein; 96.2 0.031 6.8E-07 61.7 11.2 86 181-280 194-297 (462)
432 KOG0477 DNA replication licens 96.2 0.0092 2E-07 66.1 6.9 67 221-288 484-563 (854)
433 TIGR02236 recomb_radA DNA repa 96.2 0.0094 2E-07 62.4 6.9 51 215-265 91-150 (310)
434 COG0467 RAD55 RecA-superfamily 96.2 0.0058 1.3E-07 62.3 5.1 50 214-265 18-70 (260)
435 cd02022 DPCK Dephospho-coenzym 96.2 0.0046 1E-07 59.4 4.0 29 222-251 2-30 (179)
436 COG0529 CysC Adenylylsulfate k 96.2 0.0074 1.6E-07 57.2 5.1 36 220-255 24-62 (197)
437 TIGR01420 pilT_fam pilus retra 96.2 0.0097 2.1E-07 63.4 6.7 62 219-280 122-205 (343)
438 cd03246 ABCC_Protease_Secretio 96.1 0.015 3.3E-07 55.4 7.2 25 219-243 28-52 (173)
439 PF01583 APS_kinase: Adenylyls 96.1 0.0062 1.3E-07 57.2 4.4 35 221-255 4-41 (156)
440 PRK12724 flagellar biosynthesi 96.1 0.069 1.5E-06 57.9 12.7 36 219-254 223-262 (432)
441 PRK13894 conjugal transfer ATP 96.1 0.017 3.6E-07 60.8 8.0 25 219-243 148-172 (319)
442 PRK12338 hypothetical protein; 96.1 0.0051 1.1E-07 64.3 4.0 29 219-247 4-32 (319)
443 PRK10646 ADP-binding protein; 96.1 0.023 4.9E-07 53.2 7.7 26 220-245 29-54 (153)
444 smart00534 MUTSac ATPase domai 96.1 0.023 5.1E-07 54.8 8.2 60 222-281 2-89 (185)
445 TIGR02322 phosphon_PhnN phosph 96.1 0.0049 1.1E-07 59.0 3.4 25 221-245 3-27 (179)
446 TIGR02239 recomb_RAD51 DNA rep 96.1 0.017 3.7E-07 60.8 7.7 40 215-254 92-140 (316)
447 TIGR00064 ftsY signal recognit 96.0 0.015 3.3E-07 59.8 7.1 38 218-255 71-111 (272)
448 PLN02165 adenylate isopentenyl 96.0 0.0058 1.3E-07 64.2 4.0 36 220-255 44-79 (334)
449 PRK10416 signal recognition pa 96.0 0.012 2.5E-07 62.0 6.3 36 218-253 113-151 (318)
450 COG2804 PulE Type II secretory 96.0 0.07 1.5E-06 58.6 12.2 52 181-247 234-286 (500)
451 PRK13808 adenylate kinase; Pro 96.0 0.0056 1.2E-07 64.4 3.8 29 222-250 3-31 (333)
452 PRK13764 ATPase; Provisional 96.0 0.0068 1.5E-07 68.6 4.6 26 219-244 257-282 (602)
453 PRK14021 bifunctional shikimat 96.0 0.0066 1.4E-07 68.6 4.5 32 221-252 8-39 (542)
454 PRK04301 radA DNA repair and r 96.0 0.014 3E-07 61.5 6.7 50 215-264 98-156 (317)
455 KOG0482 DNA replication licens 96.0 0.011 2.3E-07 64.2 5.7 168 186-369 343-539 (721)
456 PF03266 NTPase_1: NTPase; In 96.0 0.0054 1.2E-07 58.5 3.2 22 222-243 2-23 (168)
457 cd00984 DnaB_C DnaB helicase C 96.0 0.0096 2.1E-07 59.8 5.1 40 215-254 9-52 (242)
458 PF06414 Zeta_toxin: Zeta toxi 96.0 0.0061 1.3E-07 59.6 3.6 38 218-255 14-52 (199)
459 PRK05480 uridine/cytidine kina 95.9 0.01 2.2E-07 58.3 5.2 36 220-255 7-43 (209)
460 PRK04328 hypothetical protein; 95.9 0.0097 2.1E-07 60.4 5.1 40 215-254 19-61 (249)
461 PRK14730 coaE dephospho-CoA ki 95.9 0.0068 1.5E-07 59.2 3.8 31 221-251 3-33 (195)
462 PF08423 Rad51: Rad51; InterP 95.9 0.025 5.4E-07 57.7 8.0 108 215-331 34-185 (256)
463 TIGR02533 type_II_gspE general 95.9 0.023 5E-07 63.3 8.3 85 181-280 218-321 (486)
464 PF03029 ATP_bind_1: Conserved 95.9 0.0058 1.3E-07 61.6 3.3 29 224-252 1-32 (238)
465 cd02028 UMPK_like Uridine mono 95.9 0.0086 1.9E-07 57.6 4.3 35 222-256 2-39 (179)
466 PRK09825 idnK D-gluconate kina 95.9 0.016 3.4E-07 55.7 6.1 34 221-256 5-38 (176)
467 cd03115 SRP The signal recogni 95.9 0.0098 2.1E-07 56.5 4.7 34 222-255 3-39 (173)
468 TIGR03881 KaiC_arch_4 KaiC dom 95.9 0.011 2.4E-07 58.9 5.1 38 215-252 16-56 (229)
469 PRK00300 gmk guanylate kinase; 95.9 0.0081 1.8E-07 58.7 4.1 27 218-244 4-30 (205)
470 cd03227 ABC_Class2 ABC-type Cl 95.9 0.033 7.2E-07 52.5 8.1 24 220-243 22-45 (162)
471 PRK08533 flagellar accessory p 95.8 0.012 2.7E-07 58.9 5.3 37 215-251 20-59 (230)
472 cd02024 NRK1 Nicotinamide ribo 95.8 0.0078 1.7E-07 58.4 3.7 30 222-251 2-32 (187)
473 PF13555 AAA_29: P-loop contai 95.8 0.0092 2E-07 47.0 3.4 23 221-243 25-47 (62)
474 cd01130 VirB11-like_ATPase Typ 95.8 0.0071 1.5E-07 58.5 3.4 26 219-244 25-50 (186)
475 cd03282 ABC_MSH4_euk MutS4 hom 95.8 0.025 5.5E-07 55.6 7.4 22 220-241 30-51 (204)
476 cd01125 repA Hexameric Replica 95.8 0.1 2.2E-06 52.4 11.9 21 222-242 4-24 (239)
477 COG1419 FlhF Flagellar GTP-bin 95.8 0.04 8.6E-07 59.0 9.1 43 219-261 203-252 (407)
478 cd02023 UMPK Uridine monophosp 95.8 0.011 2.4E-07 57.5 4.7 34 222-255 2-36 (198)
479 PF13481 AAA_25: AAA domain; P 95.8 0.022 4.8E-07 54.9 6.7 23 221-243 34-56 (193)
480 PRK06761 hypothetical protein; 95.8 0.0092 2E-07 61.5 4.2 33 220-252 4-36 (282)
481 TIGR03880 KaiC_arch_3 KaiC dom 95.8 0.013 2.9E-07 58.2 5.2 39 215-253 12-53 (224)
482 PRK12337 2-phosphoglycerate ki 95.8 0.021 4.5E-07 62.5 7.0 29 218-246 254-282 (475)
483 PRK11545 gntK gluconate kinase 95.8 0.0072 1.6E-07 57.2 3.1 26 225-250 1-26 (163)
484 TIGR00235 udk uridine kinase. 95.8 0.01 2.2E-07 58.3 4.4 25 221-245 8-32 (207)
485 TIGR02538 type_IV_pilB type IV 95.7 0.079 1.7E-06 60.3 11.9 85 182-280 293-395 (564)
486 PRK13833 conjugal transfer pro 95.7 0.012 2.5E-07 62.0 4.7 25 219-243 144-168 (323)
487 PRK08356 hypothetical protein; 95.7 0.01 2.2E-07 57.8 4.1 31 221-254 7-37 (195)
488 PF00448 SRP54: SRP54-type pro 95.7 0.0086 1.9E-07 58.6 3.5 34 219-252 1-37 (196)
489 PRK09270 nucleoside triphospha 95.7 0.16 3.4E-06 50.8 12.7 27 219-245 33-59 (229)
490 PRK00081 coaE dephospho-CoA ki 95.7 0.011 2.3E-07 57.8 4.1 30 221-251 4-33 (194)
491 PRK00091 miaA tRNA delta(2)-is 95.7 0.01 2.3E-07 62.0 4.2 36 220-255 5-40 (307)
492 PRK14974 cell division protein 95.7 0.025 5.3E-07 59.9 7.0 35 219-253 140-177 (336)
493 PHA00012 I assembly protein 95.7 0.044 9.5E-07 57.1 8.6 58 269-343 80-137 (361)
494 cd03280 ABC_MutS2 MutS2 homolo 95.7 0.016 3.4E-07 56.7 5.2 21 220-240 29-49 (200)
495 PRK04220 2-phosphoglycerate ki 95.7 0.012 2.5E-07 61.1 4.4 29 218-246 91-119 (301)
496 TIGR02655 circ_KaiC circadian 95.7 0.013 2.8E-07 65.3 5.2 39 215-253 17-59 (484)
497 TIGR01425 SRP54_euk signal rec 95.7 0.021 4.5E-07 62.2 6.5 38 219-256 100-140 (429)
498 PF09848 DUF2075: Uncharacteri 95.6 0.019 4.2E-07 61.3 6.2 24 220-243 2-25 (352)
499 PF01580 FtsK_SpoIIIE: FtsK/Sp 95.6 0.025 5.5E-07 55.3 6.5 33 221-253 40-79 (205)
500 TIGR02524 dot_icm_DotB Dot/Icm 95.6 0.018 3.9E-07 61.6 5.9 25 219-243 134-158 (358)
No 1
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-88 Score=700.31 Aligned_cols=417 Identities=46% Similarity=0.780 Sum_probs=390.1
Q ss_pred CcchHHHHHHHHHHHHHHhhhCcHHHH----HHHHhhhcCCCCcEEEEEecCCCCCcchHHHHHHHHhccCccCCCCCcc
Q 041382 1 MGSAFSVVASVAILRSTFNEMIPDEVR----GYIWSITRRFSTEITMIIKESHDGSTNRLFKAVVTYLDGHALSNSVLPK 76 (600)
Q Consensus 1 ~~~~~s~~a~~~~~~~~~~~~~P~~l~----~~~~~l~~~~~~~~ti~i~e~~~~~~n~ly~a~~~YL~t~~~~~~~~~~ 76 (600)
|+++||.+|++||+|+|+++++|..++ +++++|++++++|.++.+.|++|+.+|++|.|++.||+++ +++.++
T Consensus 4 ~~~~~s~~~~~~~~~~~~~~~~p~~~~~y~~~~~~~l~g~~s~~~~~~~~e~~g~~~n~~~~aie~yl~~k---~~~~~~ 80 (457)
T KOG0743|consen 4 FTAYASLLGSLMFIKSMLQDIIPPSINPYFISALRGLFGVFSSYALIRIGEQDGVFRNQLYVAIEVYLSSK---SSAIAK 80 (457)
T ss_pred cchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhccCcccEEEEeehhccchHHHHHHHHHHhhhcc---chhhhh
Confidence 578999999999999999999999999 4667899999999999999999999999999999999999 888889
Q ss_pred eeEecccCCCccceeeccCCceeeeccCCeeEEEEEeecCCCCC-----cccceEEEEeecccchHHHHHHhHHHHHHHH
Q 041382 77 RLTVGKNENVRNFTYGLERNSEIVDVFQGVTMKWKFNSDINSTS-----HFETRWYELKFHKMHTELVKKKYLVHVLEMA 151 (600)
Q Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~d~~~g~~~~w~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~v~~~~l~~v~~~~ 151 (600)
|++.+...+++++.+.+++++++.|+|+|++++|.+++..+... ..+.|+|+|+|+++||+.|+.+|++||...+
T Consensus 81 rl~~~~~~~s~~~~l~~~~~~~i~d~f~gv~~~w~~~~~~~~~~~~~~~~~~~r~~~L~f~k~~~e~V~~syl~~v~~~~ 160 (457)
T KOG0743|consen 81 RLTQNLSKNSKSLVLGLDDNEEISDEFEGVPVKWRHFVDYNEKWIFVEREREKRYFELTFHKKPRELVTLSYLPYVVSKA 160 (457)
T ss_pred hhhhhhccccccceEEecCCcEEEEEEeceEEEEEEEEEecCcccccccCCcceEEEEEecCccHHHhHHhHHHHHHHHH
Confidence 99999999999999999999999999999999999998776533 4789999999999999999999999999999
Q ss_pred HHHHhcCceeEEeecC---------CcccccccccCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcce
Q 041382 152 KMFKDRNRIVRFHTIR---------HDRWSSSGVNLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGY 222 (600)
Q Consensus 152 ~~~~~~~~~~~~~~~~---------~~~w~~~~v~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgi 222 (600)
++|..+++.+++|+++ ++.|. ++.++||.||++|+|++++|++|++|+..|.++++||+++|++|+|||
T Consensus 161 k~I~~~~r~~kl~t~~~~~~~~~~~~~~W~--~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGY 238 (457)
T KOG0743|consen 161 KEILEENRELKLYTNSGKTVIYTAKGGEWR--SVGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGY 238 (457)
T ss_pred HHHHHHHHHHHHhhcCCCcccccccCCcce--ecCCCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccc
Confidence 9999999999999996 35788 999999999999999999999999999999999999999999999999
Q ss_pred eeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCChhHHHHHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCC
Q 041382 223 LLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRG 302 (600)
Q Consensus 223 LL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~ 302 (600)
||||||||||||++.|||++|++++|.++++.+..+++|+.++..++++|||+|+||||.+.++.|....... .....
T Consensus 239 LLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dLr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~--~~~~~ 316 (457)
T KOG0743|consen 239 LLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDLRHLLLATPNKSILLIEDIDCSFDLRERRKKKKEN--FEGDL 316 (457)
T ss_pred eeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHHHHHHHhCCCCcEEEEeeccccccccccccccccc--ccCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999877775543322 11145
Q ss_pred hHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCC-CccHHHHH
Q 041382 303 PQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIND-HDLYCHIE 381 (600)
Q Consensus 303 ~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~-~~~~~~i~ 381 (600)
+.+++|+|||++||+||+||+++||||||||+++|||||+||||||+||+|++|++++++.++++||+..+ |.++++++
T Consensus 317 ~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie 396 (457)
T KOG0743|consen 317 SRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIE 396 (457)
T ss_pred ceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHH
Confidence 77999999999999999999999999999999999999999999999999999999999999999999975 99999999
Q ss_pred HHhhhcCCCHHHHHHHHHhcC-CHHHHHHHHHHHHHhhhccccc
Q 041382 382 KLMEKVKVSPAEVAGELMKAK-GSKTSLEDFITYLESKESQEEK 424 (600)
Q Consensus 382 ~l~~~~~~t~a~i~~~l~~~~-~~~~al~~l~~~l~~~~~~~~~ 424 (600)
.+..++.+|||+|++.||++. |++.|++.++++++.++.+...
T Consensus 397 ~l~~~~~~tPA~V~e~lm~~~~dad~~lk~Lv~~l~~~~~~~~~ 440 (457)
T KOG0743|consen 397 RLIEETEVTPAQVAEELMKNKNDADVALKGLVEALESKKEKRNK 440 (457)
T ss_pred HHhhcCccCHHHHHHHHhhccccHHHHHHHHHHHHHhhhhhhcc
Confidence 999999999999999999887 8999999999999988765543
No 2
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-42 Score=350.13 Aligned_cols=235 Identities=24% Similarity=0.288 Sum_probs=197.5
Q ss_pred ccCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCcc
Q 041382 176 VNLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVV 255 (600)
Q Consensus 176 v~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~ 255 (600)
+.-.+.+||++|+|.++++++|.+.++.++.+|+.|.++|+.||+|+|||||||||||+||+|+|++.+..|+.+..+.+
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 45556689999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred C------ChhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEE
Q 041382 256 T------SDSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKIT 327 (600)
Q Consensus 256 ~------~~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ii 327 (600)
. +..-++.+|.-+ .+||||||||||+++. .|-.... +++...++|+-+||++|||+.+. +++=|
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~--kR~d~~t----~gDrEVQRTmleLL~qlDGFD~~--~nvKV 293 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGA--KRFDSGT----SGDREVQRTMLELLNQLDGFDPR--GNVKV 293 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhc--ccccCCC----CchHHHHHHHHHHHHhccCCCCC--CCeEE
Confidence 5 345567777666 5899999999999986 4433222 35677899999999999999765 56999
Q ss_pred EEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCC---ccHHHHHHHhhhcCCCHHHHHHHHH-----
Q 041382 328 VFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDH---DLYCHIEKLMEKVKVSPAEVAGELM----- 399 (600)
Q Consensus 328 I~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~---~~~~~i~~l~~~~~~t~a~i~~~l~----- 399 (600)
|++||+++.|||||+||||||+.|+||+|+.++|.+|++.+...... ..++.+..+.+ ++|+|||...+.
T Consensus 294 I~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~--g~sGAdlkaictEAGm~ 371 (406)
T COG1222 294 IMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTE--GFSGADLKAICTEAGMF 371 (406)
T ss_pred EEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcC--CCchHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999988876543 34455544443 599999999874
Q ss_pred --hcCCHHHHHHHHHHHHHhhhc
Q 041382 400 --KAKGSKTSLEDFITYLESKES 420 (600)
Q Consensus 400 --~~~~~~~al~~l~~~l~~~~~ 420 (600)
+.+...+.+++|.++++....
T Consensus 372 AiR~~R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 372 AIRERRDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred HHHhccCeecHHHHHHHHHHHHh
Confidence 233445567788887776544
No 3
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-38 Score=343.34 Aligned_cols=382 Identities=19% Similarity=0.217 Sum_probs=260.6
Q ss_pred HHHHHHHHHHhhhC-------cHHHH--------HHHHhhhcCC---CCcEEEEEecCCCCC---------cchHHHHHH
Q 041382 9 ASVAILRSTFNEMI-------PDEVR--------GYIWSITRRF---STEITMIIKESHDGS---------TNRLFKAVV 61 (600)
Q Consensus 9 a~~~~~~~~~~~~~-------P~~l~--------~~~~~l~~~~---~~~~ti~i~e~~~~~---------~n~ly~a~~ 61 (600)
+.-|+++.+++++- ++++. +.+|+.|... .+-..+-|+|.+..- ..++-.+..
T Consensus 230 Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqll 309 (693)
T KOG0730|consen 230 GKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLL 309 (693)
T ss_pred ChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHH
Confidence 34578888888653 23333 6667776653 323567778765433 345777778
Q ss_pred HHhccCccCCCCCcceeEecccCCCccceeeccCCceeeeccCCeeE---EEEEeecCCCCCcccceEEEEeecccchHH
Q 041382 62 TYLDGHALSNSVLPKRLTVGKNENVRNFTYGLERNSEIVDVFQGVTM---KWKFNSDINSTSHFETRWYELKFHKMHTEL 138 (600)
Q Consensus 62 ~YL~t~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~~~g~~~---~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (600)
+++... .+..+.+.+..+++.+.+..++++|.--.+.+=|+.- +-.-+......................-..
T Consensus 310 tL~dg~----~~~~~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGy 385 (693)
T KOG0730|consen 310 TLLDGL----KPDAKVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGY 385 (693)
T ss_pred HHHhhC----cCcCcEEEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccch
Confidence 887764 3556777788888888888888864433333333210 000000000000000000000000000000
Q ss_pred H--------HHHhHHHHHHHHHHHHhcCceeEEeecCCcccccccccCCCCCCccccccChhHHHHHHHHHHHHHhCHHH
Q 041382 139 V--------KKKYLVHVLEMAKMFKDRNRIVRFHTIRHDRWSSSGVNLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEY 210 (600)
Q Consensus 139 v--------~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~w~~~~v~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~ 210 (600)
| ...-++.+......+......++.+..+...| -.+.++|++++|.+++|.++.+.+..++++++.
T Consensus 386 vGaDL~~l~~ea~~~~~r~~~~~~~~A~~~i~psa~Re~~v------e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~ 459 (693)
T KOG0730|consen 386 VGADLAALCREASLQATRRTLEIFQEALMGIRPSALREILV------EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEK 459 (693)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCchhhhheec------cCCCCChhhccCHHHHHHHHHHHHhhhhhchHH
Confidence 0 00111111111111222222222332222222 346689999999999999999999999999999
Q ss_pred HHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC------ChhHHHHHHhhCC--Ccceeeecchhhh
Q 041382 211 YRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT------SDSSLEYLLLHVP--NRSILVVEDIDCS 282 (600)
Q Consensus 211 y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~------~~~~l~~~~~~~~--~~sIL~iDeiD~l 282 (600)
|.++|+.+|+|+|||||||||||++|+|+|++.+.+|+.+.+..+. ++..++.+|.++. .||||||||||++
T Consensus 460 F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi 539 (693)
T KOG0730|consen 460 FARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDAL 539 (693)
T ss_pred HHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhH
Confidence 9999999999999999999999999999999999999999877764 6788999999885 6999999999999
Q ss_pred hhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHH
Q 041382 283 IKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFK 362 (600)
Q Consensus 283 ~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~ 362 (600)
.+ .|++.. .+...+.+++||++|||+... .+++||++||+|+.||+||+||||||+.|++|+||.+.|.
T Consensus 540 ~~--~R~g~~-------~~v~~RVlsqLLtEmDG~e~~--k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~ 608 (693)
T KOG0730|consen 540 AG--SRGGSS-------SGVTDRVLSQLLTEMDGLEAL--KNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARL 608 (693)
T ss_pred hh--ccCCCc-------cchHHHHHHHHHHHccccccc--CcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHH
Confidence 86 664322 266789999999999999765 4599999999999999999999999999999999999999
Q ss_pred HHHHHhcCcCCCccHHHHHHHhhhc-CCCHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041382 363 QLAANYLDINDHDLYCHIEKLMEKV-KVSPAEVAGELMKAKGSKTSLEDFITYLE 416 (600)
Q Consensus 363 ~il~~~l~~~~~~~~~~i~~l~~~~-~~t~a~i~~~l~~~~~~~~al~~l~~~l~ 416 (600)
+|++.++...+.....+++.+++.+ +||+|||.+.+. ++|+-++.+-++
T Consensus 609 ~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq-----~A~~~a~~e~i~ 658 (693)
T KOG0730|consen 609 EILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQ-----EAALLALRESIE 658 (693)
T ss_pred HHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHH-----HHHHHHHHHhcc
Confidence 9999999887655555666666543 799999999885 555555544443
No 4
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.8e-38 Score=332.04 Aligned_cols=308 Identities=21% Similarity=0.248 Sum_probs=218.3
Q ss_pred CCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC----
Q 041382 181 PMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT---- 256 (600)
Q Consensus 181 p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~---- 256 (600)
.++|.+++|.+....++.+.+.. +.+|+.|..+|+.||||+|||||||||||+||+|+|++++.|++.++...+.
T Consensus 186 nv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvS 264 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVS 264 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccC
Confidence 46899999999999999988765 8999999999999999999999999999999999999999999999988775
Q ss_pred --ChhHHHHHHhhCC--CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCcccc--CCCeeEEEEe
Q 041382 257 --SDSSLEYLLLHVP--NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCC--CGDEKITVFT 330 (600)
Q Consensus 257 --~~~~l~~~~~~~~--~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~--~~~~~iiI~T 330 (600)
++..++++|..+. .|||+||||||++.+ +|...+ ....++.+++||+.||++... .|..|+||+|
T Consensus 265 GESEkkiRelF~~A~~~aPcivFiDeIDAI~p--kRe~aq-------reMErRiVaQLlt~mD~l~~~~~~g~~VlVIgA 335 (802)
T KOG0733|consen 265 GESEKKIRELFDQAKSNAPCIVFIDEIDAITP--KREEAQ-------REMERRIVAQLLTSMDELSNEKTKGDPVLVIGA 335 (802)
T ss_pred cccHHHHHHHHHHHhccCCeEEEeeccccccc--chhhHH-------HHHHHHHHHHHHHhhhcccccccCCCCeEEEec
Confidence 5689999999985 799999999999976 554332 245678999999999998654 3467999999
Q ss_pred cCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhhhcCCCHHHHHHHHHhcCCHHHHHHH
Q 041382 331 TNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLMEKVKVSPAEVAGELMKAKGSKTSLED 410 (600)
Q Consensus 331 TN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~~~~~t~a~i~~~l~~~~~~~~al~~ 410 (600)
||+|+.|||||+|+||||+.|.+..|+..+|.+|++.....-.+...-+...+ +.+||++|..+|++-. .+++.-+
T Consensus 336 TnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~ql---A~lTPGfVGADL~AL~-~~Aa~vA 411 (802)
T KOG0733|consen 336 TNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQL---AKLTPGFVGADLMALC-REAAFVA 411 (802)
T ss_pred CCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHH---HhcCCCccchhHHHHH-HHHHHHH
Confidence 99999999999999999999999999999999999988765444433333344 3356666666654221 2333333
Q ss_pred HHHHHHhhhc-cccccCCCCC--CCCCCCC--CCCCC------CCC--------CCCCCCCCC-----------------
Q 041382 411 FITYLESKES-QEEKSSTAPP--LASNVDG--NRPEP------QEN--------GNNISKSGV----------------- 454 (600)
Q Consensus 411 l~~~l~~~~~-~~~~~~~~~~--~~~~~~~--~~~~~------~~~--------~~~~S~~~~----------------- 454 (600)
+...+..... .......+.. ...+.+. ...+. ... ....+.+..
T Consensus 412 ikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~ 491 (802)
T KOG0733|consen 412 IKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALS 491 (802)
T ss_pred HHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHH
Confidence 3333332221 0000000000 0000000 00000 000 000000000
Q ss_pred CCCCCC-----ccccccccccCCCcc-hhhHHHHHHHHHHhhhhHHHhcCccchh
Q 041382 455 QDQSSH-----TETEAADMGNVGGYS-VKAEFANIIKAIFSKHGDIAANSCLQSK 503 (600)
Q Consensus 455 ~~~~s~-----~~~~~~~~v~v~g~~-v~~~~~~~v~~~~~k~~di~~~~~~~~~ 503 (600)
.-+++. .+...+.|.|||+++ |+-.+.-.|.|| -||||+++.+-...+
T Consensus 492 ~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~P-iK~pd~~k~lGi~~P 545 (802)
T KOG0733|consen 492 KIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAP-IKRPDLFKALGIDAP 545 (802)
T ss_pred hcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhh-ccCHHHHHHhCCCCC
Confidence 001111 112347899999999 999999999999 999999998766553
No 5
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-37 Score=322.41 Aligned_cols=207 Identities=23% Similarity=0.315 Sum_probs=181.6
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC---
Q 041382 180 HPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT--- 256 (600)
Q Consensus 180 ~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~--- 256 (600)
..++|++|-|-++.|+++.+.+ .|+++|..|.++|-..|+|+||.||||||||+||+|+|++.+.||+....+.+.
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiV-efLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~ 377 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIV-EFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMF 377 (752)
T ss_pred cccccccccChHHHHHHHHHHH-HHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhh
Confidence 3578999999999999997755 799999999999999999999999999999999999999999999999988774
Q ss_pred ---ChhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEec
Q 041382 257 ---SDSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTT 331 (600)
Q Consensus 257 ---~~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TT 331 (600)
+...+|.+|..+ .+||||||||||++++ +|... .....+.++++||..|||+..+ +++|||++|
T Consensus 378 VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~--kR~~~-------~~~y~kqTlNQLLvEmDGF~qN--eGiIvigAT 446 (752)
T KOG0734|consen 378 VGVGARRVRDLFAAAKARAPCIIFIDEIDAVGG--KRNPS-------DQHYAKQTLNQLLVEMDGFKQN--EGIIVIGAT 446 (752)
T ss_pred hcccHHHHHHHHHHHHhcCCeEEEEechhhhcc--cCCcc-------HHHHHHHHHHHHHHHhcCcCcC--CceEEEecc
Confidence 668899999887 4799999999999986 44322 1125788999999999999766 459999999
Q ss_pred CCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhhhc-CCCHHHHHHHH
Q 041382 332 NYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLMEKV-KVSPAEVAGEL 398 (600)
Q Consensus 332 N~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~~~-~~t~a~i~~~l 398 (600)
|.|+.||+||.||||||++|.+|.||...|.+|++.|+....+....+...+++++ ++|+||+++.+
T Consensus 447 Nfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlV 514 (752)
T KOG0734|consen 447 NFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLV 514 (752)
T ss_pred CChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999877665555555566554 89999999987
No 6
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-36 Score=321.22 Aligned_cols=222 Identities=19% Similarity=0.240 Sum_probs=194.5
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC--
Q 041382 179 DHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT-- 256 (600)
Q Consensus 179 ~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~-- 256 (600)
-+.++|++|++.++++.++...+..+.++|+.|+.+|+..|.|+|||||||||||.||+|+|++.|.+|+.+-...+.
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNk 584 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNK 584 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHH
Confidence 355799999999999999999999999999999999999999999999999999999999999999999999876653
Q ss_pred ----ChhHHHHHHhhCC--CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEe
Q 041382 257 ----SDSSLEYLLLHVP--NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFT 330 (600)
Q Consensus 257 ----~~~~l~~~~~~~~--~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~T 330 (600)
++..++.+|.++. .||||||||||++.+ .|+.. ....+.+.+++||.+|||+....| |.||++
T Consensus 585 YVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p--~R~~~-------~s~~s~RvvNqLLtElDGl~~R~g--V~viaA 653 (802)
T KOG0733|consen 585 YVGESERAVRQVFQRARASAPCVIFFDEIDALVP--RRSDE-------GSSVSSRVVNQLLTELDGLEERRG--VYVIAA 653 (802)
T ss_pred HhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCc--ccCCC-------CchhHHHHHHHHHHHhcccccccc--eEEEee
Confidence 5678999998884 799999999999986 55432 245677899999999999977755 999999
Q ss_pred cCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcC-----CCccHHHHHHHhhhcCCCHHHHHHHHHhcCCHH
Q 041382 331 TNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIN-----DHDLYCHIEKLMEKVKVSPAEVAGELMKAKGSK 405 (600)
Q Consensus 331 TN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~-----~~~~~~~i~~l~~~~~~t~a~i~~~l~~~~~~~ 405 (600)
||+|+.+|||++||||||..+++++|+.++|..|++...... ....++++....+..+||+||++..+- +
T Consensus 654 TNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvr-----e 728 (802)
T KOG0733|consen 654 TNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVR-----E 728 (802)
T ss_pred cCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHH-----H
Confidence 999999999999999999999999999999999999988742 233456666666667899999998874 7
Q ss_pred HHHHHHHHHHH
Q 041382 406 TSLEDFITYLE 416 (600)
Q Consensus 406 ~al~~l~~~l~ 416 (600)
+++-++.+.+.
T Consensus 729 Asi~AL~~~~~ 739 (802)
T KOG0733|consen 729 ASILALRESLF 739 (802)
T ss_pred HHHHHHHHHHh
Confidence 78888887776
No 7
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-34 Score=317.84 Aligned_cols=232 Identities=25% Similarity=0.327 Sum_probs=190.0
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT 256 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~ 256 (600)
.-..+++|+||+|.++.|++|.+.+ .|+++|+.|.++|...|+|+||+||||||||+||+|+|.+.|.||+.++.+++.
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V-~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFv 381 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFV-KFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFV 381 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHH-HHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHH
Confidence 3445689999999999999999977 699999999999999999999999999999999999999999999999998875
Q ss_pred ------ChhHHHHHHhhCC--CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEE
Q 041382 257 ------SDSSLEYLLLHVP--NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITV 328 (600)
Q Consensus 257 ------~~~~l~~~~~~~~--~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI 328 (600)
..+.++.+|..+. .|||+||||||++.. .|.+. ...+.......++++||-.|||+.+. .++|++
T Consensus 382 E~~~g~~asrvr~lf~~ar~~aP~iifideida~~~--~r~G~---~~~~~~~e~e~tlnQll~emDgf~~~--~~vi~~ 454 (774)
T KOG0731|consen 382 EMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGR--KRGGK---GTGGGQDEREQTLNQLLVEMDGFETS--KGVIVL 454 (774)
T ss_pred HHhcccchHHHHHHHHHhhccCCeEEEecccccccc--ccccc---ccCCCChHHHHHHHHHHHHhcCCcCC--CcEEEE
Confidence 5688999998885 799999999999975 45311 11234566788999999999999766 559999
Q ss_pred EecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCc-cHHHHHHHhh-hcCCCHHHHHHHHH-------
Q 041382 329 FTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHD-LYCHIEKLME-KVKVSPAEVAGELM------- 399 (600)
Q Consensus 329 ~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~-~~~~i~~l~~-~~~~t~a~i~~~l~------- 399 (600)
++||+++.||+||+||||||++|+++.|+..+|.+|++.++...... ...++..+.. ..++|+|||++.+.
T Consensus 455 a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~ 534 (774)
T KOG0731|consen 455 AATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAA 534 (774)
T ss_pred eccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999865432 2233333332 34799999999763
Q ss_pred hcCCHHHHHHHHHHHHH
Q 041382 400 KAKGSKTSLEDFITYLE 416 (600)
Q Consensus 400 ~~~~~~~al~~l~~~l~ 416 (600)
+.........++..+++
T Consensus 535 r~~~~~i~~~~~~~a~~ 551 (774)
T KOG0731|consen 535 RKGLREIGTKDLEYAIE 551 (774)
T ss_pred HhccCccchhhHHHHHH
Confidence 11233334455555555
No 8
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-34 Score=313.48 Aligned_cols=215 Identities=20% Similarity=0.272 Sum_probs=177.1
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT 256 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~ 256 (600)
+..+.++|+||+|.+++|..|++.+..++++|+.|. .|..++.|+|||||||||||.+|+|+|.++...|+.+....+.
T Consensus 664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfs-sglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELL 742 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFS-SGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELL 742 (953)
T ss_pred CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhh-ccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHH
Confidence 445668999999999999999999999999999986 4667778999999999999999999999999999999876653
Q ss_pred ------ChhHHHHHHhhCC--CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEE
Q 041382 257 ------SDSSLEYLLLHVP--NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITV 328 (600)
Q Consensus 257 ------~~~~l~~~~~~~~--~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI 328 (600)
++.++|++|.+++ +|||||+||+|++.+ +|+..+ +..+...+.+|+||.+|||+.......+.||
T Consensus 743 NMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP--~RG~sG-----DSGGVMDRVVSQLLAELDgls~~~s~~VFVi 815 (953)
T KOG0736|consen 743 NMYVGQSEENVREVFERARSAAPCVIFFDELDSLAP--NRGRSG-----DSGGVMDRVVSQLLAELDGLSDSSSQDVFVI 815 (953)
T ss_pred HHHhcchHHHHHHHHHHhhccCCeEEEeccccccCc--cCCCCC-----CccccHHHHHHHHHHHhhcccCCCCCceEEE
Confidence 7899999999985 799999999999987 443332 2346678899999999999986566789999
Q ss_pred EecCCcCcCCHHHHhcCCcceEEEeCCCCH-HHHHHHHHHhcCcCCCccHHHHHHHhhh--cCCCHHHHHHHHH
Q 041382 329 FTTNYKDRIDPALLRAGRMDRHINLSYCTF-STFKQLAANYLDINDHDLYCHIEKLMEK--VKVSPAEVAGELM 399 (600)
Q Consensus 329 ~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~-e~r~~il~~~l~~~~~~~~~~i~~l~~~--~~~t~a~i~~~l~ 399 (600)
++||+|+-|||||+||||||.-++++++.. +.+..+++.............+.++++. ..+|+||+-..+-
T Consensus 816 GATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCS 889 (953)
T KOG0736|consen 816 GATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCS 889 (953)
T ss_pred ecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHH
Confidence 999999999999999999999999988855 4566777765554433333333333332 3699999988764
No 9
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-34 Score=274.81 Aligned_cols=214 Identities=25% Similarity=0.313 Sum_probs=182.0
Q ss_pred CCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC-
Q 041382 178 LDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT- 256 (600)
Q Consensus 178 ~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~- 256 (600)
-.+.+++.+++|.+-+|++|.+.++.++.+.+.|+++|+.||||+|||||||||||+|++|+|++....|+.+..+.+.
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvq 227 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 227 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH
Confidence 3445799999999999999999999999999999999999999999999999999999999999999999999988774
Q ss_pred -----ChhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEE
Q 041382 257 -----SDSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVF 329 (600)
Q Consensus 257 -----~~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~ 329 (600)
+..-++.+|.-+ ..|+||||||||++.. +|-... .+.....+..+-+|||.|||+... .++-+|+
T Consensus 228 kylgegprmvrdvfrlakenapsiifideidaiat--krfdaq----tgadrevqril~ellnqmdgfdq~--~nvkvim 299 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIAT--KRFDAQ----TGADREVQRILIELLNQMDGFDQT--TNVKVIM 299 (408)
T ss_pred HHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhh--hhcccc----ccccHHHHHHHHHHHHhccCcCcc--cceEEEE
Confidence 445677777655 5799999999999974 442221 245677889999999999999655 5699999
Q ss_pred ecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHh-hhcCCCHHHHHHHHH
Q 041382 330 TTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLM-EKVKVSPAEVAGELM 399 (600)
Q Consensus 330 TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~-~~~~~t~a~i~~~l~ 399 (600)
+||+.+.|||||+||||+|+.|+||+|+..+++-++....+........+++.+. .-..+|+|+|...+.
T Consensus 300 atnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicq 370 (408)
T KOG0727|consen 300 ATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQ 370 (408)
T ss_pred ecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHH
Confidence 9999999999999999999999999999999998988877765555555555554 334799999998874
No 10
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-33 Score=271.78 Aligned_cols=216 Identities=25% Similarity=0.290 Sum_probs=178.7
Q ss_pred ccCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCcc
Q 041382 176 VNLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVV 255 (600)
Q Consensus 176 v~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~ 255 (600)
+..-+..+++-++|.+.+.++|.+.++.+.++|+.|..+|++-|+|+|||||||||||.+|+|+|++....|+.++.+.+
T Consensus 138 VeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgsel 217 (404)
T KOG0728|consen 138 VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 217 (404)
T ss_pred hhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHH
Confidence 34445678999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred C------ChhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEE
Q 041382 256 T------SDSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKIT 327 (600)
Q Consensus 256 ~------~~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ii 327 (600)
. +..-++.+|.-+ .+|||||+||||+++. .|...++ ++++..+++.-+|||.+||+.... ++-+
T Consensus 218 vqk~igegsrmvrelfvmarehapsiifmdeidsigs--~r~e~~~----ggdsevqrtmlellnqldgfeatk--nikv 289 (404)
T KOG0728|consen 218 VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGS--SRVESGS----GGDSEVQRTMLELLNQLDGFEATK--NIKV 289 (404)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCceEeeeccccccc--ccccCCC----CccHHHHHHHHHHHHhcccccccc--ceEE
Confidence 5 334567777555 5899999999999975 4432222 356678889999999999997764 5999
Q ss_pred EEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhhh-cCCCHHHHHHHHH
Q 041382 328 VFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLMEK-VKVSPAEVAGELM 399 (600)
Q Consensus 328 I~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~~-~~~t~a~i~~~l~ 399 (600)
|++||+.+.|||||+||||+|+.|+||+|+.++|.+|++.+....+....-.+..+++. .+.|+|++.+.+.
T Consensus 290 imatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vct 362 (404)
T KOG0728|consen 290 IMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCT 362 (404)
T ss_pred EEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhh
Confidence 99999999999999999999999999999999999999976654432222223333332 3589999988774
No 11
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-34 Score=280.73 Aligned_cols=216 Identities=25% Similarity=0.299 Sum_probs=179.4
Q ss_pred ccCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCcc
Q 041382 176 VNLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVV 255 (600)
Q Consensus 176 v~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~ 255 (600)
+...+..||.+++|.+.+.++|.+.++.++.+|++|...|+.+|+|++|||+||||||.||+|+|+.....|+.+-.+.+
T Consensus 176 ~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseL 255 (440)
T KOG0726|consen 176 VEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSEL 255 (440)
T ss_pred cccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHH
Confidence 34445569999999999999999999999999999999999999999999999999999999999999999988877766
Q ss_pred C------ChhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEE
Q 041382 256 T------SDSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKIT 327 (600)
Q Consensus 256 ~------~~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ii 327 (600)
. +..-++.+|.-+ .+|||+||||||++.. +|-...+ ++....++++-+|||.+||+.+. +.+-+
T Consensus 256 iQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGt--KRyds~S----ggerEiQrtmLELLNQldGFdsr--gDvKv 327 (440)
T KOG0726|consen 256 IQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGT--KRYDSNS----GGEREIQRTMLELLNQLDGFDSR--GDVKV 327 (440)
T ss_pred HHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhcc--ccccCCC----ccHHHHHHHHHHHHHhccCcccc--CCeEE
Confidence 4 234456666555 5899999999999975 4432222 34566788888999999999775 45999
Q ss_pred EEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHh-hhcCCCHHHHHHHHH
Q 041382 328 VFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLM-EKVKVSPAEVAGELM 399 (600)
Q Consensus 328 I~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~-~~~~~t~a~i~~~l~ 399 (600)
|++||+.+.|||||+||||+|+.|+||.||...++.|+..+...........++.++ ....+|+|||...+.
T Consensus 328 imATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAict 400 (440)
T KOG0726|consen 328 IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICT 400 (440)
T ss_pred EEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHH
Confidence 999999999999999999999999999999999999998766654433344455544 345799999998874
No 12
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=6.2e-32 Score=289.23 Aligned_cols=234 Identities=24% Similarity=0.286 Sum_probs=185.2
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT 256 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~ 256 (600)
.-.+..+|++|+|.+.+|++|.+.+..++.+++.|..+|+++|+|+|||||||||||++|+++|++++.+++.+.++.+.
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~ 216 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV 216 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999876553
Q ss_pred ------ChhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEE
Q 041382 257 ------SDSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITV 328 (600)
Q Consensus 257 ------~~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI 328 (600)
+...++.+|..+ .+||||||||||+++. .|..... +........+.+|++.+|++... .++++|
T Consensus 217 ~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~--~r~~~~~----~~d~~~~r~l~~LL~~ld~~~~~--~~v~VI 288 (398)
T PTZ00454 217 QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIAT--KRFDAQT----GADREVQRILLELLNQMDGFDQT--TNVKVI 288 (398)
T ss_pred HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhcc--ccccccC----CccHHHHHHHHHHHHHhhccCCC--CCEEEE
Confidence 234566776554 5799999999999975 3322111 12234567889999999998654 358999
Q ss_pred EecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhhh-cCCCHHHHHHHHHh-------
Q 041382 329 FTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLMEK-VKVSPAEVAGELMK------- 400 (600)
Q Consensus 329 ~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~~-~~~t~a~i~~~l~~------- 400 (600)
+|||+++.||||++||||||..|+|++|+.++|..|++.++..........+..++.. .++|++||...+..
T Consensus 289 ~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r 368 (398)
T PTZ00454 289 MATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVR 368 (398)
T ss_pred EecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998876543333334444432 47999999987742
Q ss_pred cCCHHHHHHHHHHHHHhh
Q 041382 401 AKGSKTSLEDFITYLESK 418 (600)
Q Consensus 401 ~~~~~~al~~l~~~l~~~ 418 (600)
........+++.+++...
T Consensus 369 ~~~~~i~~~df~~A~~~v 386 (398)
T PTZ00454 369 KNRYVILPKDFEKGYKTV 386 (398)
T ss_pred cCCCccCHHHHHHHHHHH
Confidence 122234455666666554
No 13
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-32 Score=278.99 Aligned_cols=225 Identities=21% Similarity=0.290 Sum_probs=183.2
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCCh-
Q 041382 180 HPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSD- 258 (600)
Q Consensus 180 ~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~~- 258 (600)
+.+.|++|+|..+.|+-|.+.+..++.-|++|+.+..||+ |+|++||||||||+||+|+|.+++..|+.|+.+.+.+.
T Consensus 207 p~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWk-gvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKw 285 (491)
T KOG0738|consen 207 PNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWK-GVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKW 285 (491)
T ss_pred CCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccc-eeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhh
Confidence 3468889999999999999999999999999999988886 99999999999999999999999999999999888743
Q ss_pred -----hHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCe---eEEE
Q 041382 259 -----SSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDE---KITV 328 (600)
Q Consensus 259 -----~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~---~iiI 328 (600)
.-++-+|.-+ .+|++|||||||+|+. .|++. +++..+++.-++||..|||+.... ++ |+|+
T Consensus 286 RGeSEKlvRlLFemARfyAPStIFiDEIDslcs--~RG~s------~EHEaSRRvKsELLvQmDG~~~t~-e~~k~VmVL 356 (491)
T KOG0738|consen 286 RGESEKLVRLLFEMARFYAPSTIFIDEIDSLCS--QRGGS------SEHEASRRVKSELLVQMDGVQGTL-ENSKVVMVL 356 (491)
T ss_pred ccchHHHHHHHHHHHHHhCCceeehhhHHHHHh--cCCCc------cchhHHHHHHHHHHHHhhcccccc-ccceeEEEE
Confidence 3344444444 4899999999999986 44332 356778899999999999986443 23 6777
Q ss_pred EecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhhh-cCCCHHHHHHHHHhcCCHHHH
Q 041382 329 FTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLMEK-VKVSPAEVAGELMKAKGSKTS 407 (600)
Q Consensus 329 ~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~~-~~~t~a~i~~~l~~~~~~~~a 407 (600)
++||.|+.||.||+| ||...|++|.|+.++|..+++..|..........++.+.+. .+||++||...+- +++
T Consensus 357 AATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCr-----eAs 429 (491)
T KOG0738|consen 357 AATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCR-----EAS 429 (491)
T ss_pred eccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHH-----HHH
Confidence 899999999999999 99999999999999999999998875433333333333332 3699999999874 888
Q ss_pred HHHHHHHHHhhhcc
Q 041382 408 LEDFITYLESKESQ 421 (600)
Q Consensus 408 l~~l~~~l~~~~~~ 421 (600)
+..++..+.....+
T Consensus 430 m~~mRR~i~g~~~~ 443 (491)
T KOG0738|consen 430 MMAMRRKIAGLTPR 443 (491)
T ss_pred HHHHHHHHhcCCcH
Confidence 88888776554433
No 14
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=4.5e-32 Score=263.21 Aligned_cols=213 Identities=21% Similarity=0.264 Sum_probs=174.2
Q ss_pred ccCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCcc
Q 041382 176 VNLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVV 255 (600)
Q Consensus 176 v~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~ 255 (600)
+.-.+..++++++|.+.+++++++.+..++.+++.|..+|+.||+|+|+|||||||||.+|+|-|...+..|..+....+
T Consensus 162 vDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQL 241 (424)
T KOG0652|consen 162 VDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQL 241 (424)
T ss_pred eccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHH
Confidence 34445568999999999999999999999999999999999999999999999999999999999999998888776655
Q ss_pred C-----C-hhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEE
Q 041382 256 T-----S-DSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKIT 327 (600)
Q Consensus 256 ~-----~-~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ii 327 (600)
. + ..-++..|.-+ ..|+||||||+|+++. +|-.... .+....+++.-+|||.+||+.+. +.+-+
T Consensus 242 VQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGt--KRfDSek----~GDREVQRTMLELLNQLDGFss~--~~vKv 313 (424)
T KOG0652|consen 242 VQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGT--KRFDSEK----AGDREVQRTMLELLNQLDGFSSD--DRVKV 313 (424)
T ss_pred HhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhcc--ccccccc----cccHHHHHHHHHHHHhhcCCCCc--cceEE
Confidence 3 2 34456666555 5899999999999975 4432222 34567888999999999999765 56999
Q ss_pred EEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCC---CccHHHHHHHhhhcCCCHHHHHHHH
Q 041382 328 VFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIND---HDLYCHIEKLMEKVKVSPAEVAGEL 398 (600)
Q Consensus 328 I~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~---~~~~~~i~~l~~~~~~t~a~i~~~l 398 (600)
|++||+.+.|||||+|.||+|+.|+||.|+.++|..|++.+..... ...++++....+ .+.+|+....+
T Consensus 314 iAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTd--dFNGAQcKAVc 385 (424)
T KOG0652|consen 314 IAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTD--DFNGAQCKAVC 385 (424)
T ss_pred EeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhccc--ccCchhheeee
Confidence 9999999999999999999999999999999999999997766543 334444444333 47788776554
No 15
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=7.7e-32 Score=294.86 Aligned_cols=212 Identities=26% Similarity=0.338 Sum_probs=181.4
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC--
Q 041382 179 DHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT-- 256 (600)
Q Consensus 179 ~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~-- 256 (600)
...++|.+++|.++.|+++.+.+ .|+++|..|..+|...|+|+||+||||||||+||+|+|.+.+.|++.++.+++.
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiV-dfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELV-DFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHH-HHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 45579999999999999999876 699999999999999999999999999999999999999999999999998875
Q ss_pred ----ChhHHHHHHhhCC--CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEe
Q 041382 257 ----SDSSLEYLLLHVP--NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFT 330 (600)
Q Consensus 257 ----~~~~l~~~~~~~~--~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~T 330 (600)
+.+.+|.+|.++. +||||||||||++.. .|+.+.+ ++......++++||.+|||+..+ ++++++++
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr--~Rg~g~G----ggnderEQTLNQlLvEmDGF~~~--~gviviaa 294 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGR--QRGAGLG----GGNDEREQTLNQLLVEMDGFGGN--EGVIVIAA 294 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhccc--ccCCCCC----CCchHHHHHHHHHHhhhccCCCC--CceEEEec
Confidence 6789999999985 599999999999975 5543322 34566778999999999999754 45999999
Q ss_pred cCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhhh-cCCCHHHHHHHHH
Q 041382 331 TNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLMEK-VKVSPAEVAGELM 399 (600)
Q Consensus 331 TN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~~-~~~t~a~i~~~l~ 399 (600)
||+|+-|||||+||||||++|.++.||...|.+|++-++.............++.. .++++|++.+.+.
T Consensus 295 TNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~N 364 (596)
T COG0465 295 TNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLN 364 (596)
T ss_pred CCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHH
Confidence 99999999999999999999999999999999999987776544433333333332 3699999998773
No 16
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.2e-31 Score=285.94 Aligned_cols=229 Identities=21% Similarity=0.271 Sum_probs=193.9
Q ss_pred cccCCCC--CCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEec
Q 041382 175 GVNLDHP--MTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNL 252 (600)
Q Consensus 175 ~v~~~~p--~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~ 252 (600)
++.+..+ ..|++++|..++|+.+.+.+..+.++|..|...+++.+.|+|||||||||||.||.|+|...+..++.+..
T Consensus 655 ~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKG 734 (952)
T KOG0735|consen 655 GIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKG 734 (952)
T ss_pred hccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecC
Confidence 3444444 46889999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CccC------ChhHHHHHHhhCC--CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCe
Q 041382 253 SVVT------SDSSLEYLLLHVP--NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDE 324 (600)
Q Consensus 253 ~~~~------~~~~l~~~~~~~~--~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~ 324 (600)
..+- ++..+|.+|.++. +|||||+||+|++.+ +|+. +..+...+.+++||..|||.... .+
T Consensus 735 PElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAP--kRGh-------DsTGVTDRVVNQlLTelDG~Egl--~G 803 (952)
T KOG0735|consen 735 PELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAP--KRGH-------DSTGVTDRVVNQLLTELDGAEGL--DG 803 (952)
T ss_pred HHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCc--ccCC-------CCCCchHHHHHHHHHhhcccccc--ce
Confidence 7653 6788999999884 799999999999986 5532 34567788999999999999765 45
Q ss_pred eEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhh-hcCCCHHHHHHHHHhcCC
Q 041382 325 KITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLME-KVKVSPAEVAGELMKAKG 403 (600)
Q Consensus 325 ~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~-~~~~t~a~i~~~l~~~~~ 403 (600)
+.|+++|.+|+.|||||+||||+|+.++-|.|++.+|.+|++............+++.++. ..++|+||++..|.
T Consensus 804 V~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~---- 879 (952)
T KOG0735|consen 804 VYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLY---- 879 (952)
T ss_pred EEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHH----
Confidence 9999999999999999999999999999999999999999997765443333334444433 23699999999986
Q ss_pred HHHHHHHHHHHHHhhh
Q 041382 404 SKTSLEDFITYLESKE 419 (600)
Q Consensus 404 ~~~al~~l~~~l~~~~ 419 (600)
.+-+.++.+++.+..
T Consensus 880 -~A~l~avh~~l~~~~ 894 (952)
T KOG0735|consen 880 -NAQLAAVHEILKRED 894 (952)
T ss_pred -HHHHHHHHHHHHhcC
Confidence 667788888887655
No 17
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.97 E-value=1.6e-30 Score=279.26 Aligned_cols=237 Identities=24% Similarity=0.271 Sum_probs=185.8
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT 256 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~ 256 (600)
...+..+|++|+|.++++++|.+.+..++.+++.|+.+|+.+|+|+|||||||||||++|+++|++++.+++.++++.+.
T Consensus 123 ~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~ 202 (389)
T PRK03992 123 IESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 202 (389)
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHh
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred ------ChhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEE
Q 041382 257 ------SDSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITV 328 (600)
Q Consensus 257 ------~~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI 328 (600)
+...++.+|..+ ..||||||||||.+++ .|..... ........++..+++.+|++... .++.||
T Consensus 203 ~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~--~r~~~~~----~~~~~~~~~l~~lL~~ld~~~~~--~~v~VI 274 (389)
T PRK03992 203 QKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAA--KRTDSGT----SGDREVQRTLMQLLAEMDGFDPR--GNVKII 274 (389)
T ss_pred HhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhc--ccccCCC----CccHHHHHHHHHHHHhccccCCC--CCEEEE
Confidence 234566677665 4799999999999975 3332211 12234466788999999988544 359999
Q ss_pred EecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhh-hcCCCHHHHHHHHHh-------
Q 041382 329 FTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLME-KVKVSPAEVAGELMK------- 400 (600)
Q Consensus 329 ~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~-~~~~t~a~i~~~l~~------- 400 (600)
+|||+++.+|+|++||||||..|+||+|+.++|.+|++.++..........+..+.. ..++|++|+...+..
T Consensus 275 ~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~ 354 (389)
T PRK03992 275 AATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIR 354 (389)
T ss_pred EecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987544322222333333 236999999987641
Q ss_pred cCCHHHHHHHHHHHHHhhhcc
Q 041382 401 AKGSKTSLEDFITYLESKESQ 421 (600)
Q Consensus 401 ~~~~~~al~~l~~~l~~~~~~ 421 (600)
........+++.+++......
T Consensus 355 ~~~~~i~~~d~~~A~~~~~~~ 375 (389)
T PRK03992 355 DDRTEVTMEDFLKAIEKVMGK 375 (389)
T ss_pred cCCCCcCHHHHHHHHHHHhcc
Confidence 122234556666666655443
No 18
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.7e-31 Score=258.45 Aligned_cols=214 Identities=22% Similarity=0.248 Sum_probs=180.4
Q ss_pred ccCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCcc
Q 041382 176 VNLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVV 255 (600)
Q Consensus 176 v~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~ 255 (600)
|.-.+.+|+.++.|-.++++.+.+.++.++.+|+.|-.+|+.||+|+|||||||||||.+|+|+|+..+.-|+.+-.+.+
T Consensus 168 veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigsel 247 (435)
T KOG0729|consen 168 VEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSEL 247 (435)
T ss_pred eecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHH
Confidence 45566689999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred C------ChhHHHHHHhhCC--CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEE
Q 041382 256 T------SDSSLEYLLLHVP--NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKIT 327 (600)
Q Consensus 256 ~------~~~~l~~~~~~~~--~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ii 327 (600)
. +..-++.+|.-+. ..||||+||||++.+ .|-... .++.+..+.+.-+|++.+||+... +++-+
T Consensus 248 vqkyvgegarmvrelf~martkkaciiffdeidaigg--arfddg----~ggdnevqrtmleli~qldgfdpr--gnikv 319 (435)
T KOG0729|consen 248 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGG--ARFDDG----AGGDNEVQRTMLELINQLDGFDPR--GNIKV 319 (435)
T ss_pred HHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccC--ccccCC----CCCcHHHHHHHHHHHHhccCCCCC--CCeEE
Confidence 4 3355677776664 679999999999987 332111 135677889999999999999655 45899
Q ss_pred EEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcC---CCccHHHHHHHhhhcCCCHHHHHHHHH
Q 041382 328 VFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIN---DHDLYCHIEKLMEKVKVSPAEVAGELM 399 (600)
Q Consensus 328 I~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~---~~~~~~~i~~l~~~~~~t~a~i~~~l~ 399 (600)
+++||+|+.|||||+||||+|+.++|..|+-+.|..|++.+.... ....++.+..+... -|+|+|...+.
T Consensus 320 lmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpn--stgaeirsvct 392 (435)
T KOG0729|consen 320 LMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPN--STGAEIRSVCT 392 (435)
T ss_pred EeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCC--CcchHHHHHHH
Confidence 999999999999999999999999999999999999988665433 23445666677655 78999988764
No 19
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.97 E-value=3.1e-30 Score=277.91 Aligned_cols=235 Identities=23% Similarity=0.278 Sum_probs=184.1
Q ss_pred ccCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCcc
Q 041382 176 VNLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVV 255 (600)
Q Consensus 176 v~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~ 255 (600)
+...++.+|++|+|.+++++.|.+.+..++.+++.|..+|+.+++|+|||||||||||++|+++|++++.+++.+..+.+
T Consensus 174 ~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL 253 (438)
T PTZ00361 174 VDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSEL 253 (438)
T ss_pred cccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchh
Confidence 34556689999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred C------ChhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEE
Q 041382 256 T------SDSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKIT 327 (600)
Q Consensus 256 ~------~~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ii 327 (600)
. +...++.+|..+ ..||||||||||+++. .|..... +.......++..||+.+|++... .++.|
T Consensus 254 ~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~--kR~~~~s----gg~~e~qr~ll~LL~~Ldg~~~~--~~V~V 325 (438)
T PTZ00361 254 IQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGT--KRYDATS----GGEKEIQRTMLELLNQLDGFDSR--GDVKV 325 (438)
T ss_pred hhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhc--cCCCCCC----cccHHHHHHHHHHHHHHhhhccc--CCeEE
Confidence 4 234466666554 4799999999999975 3422111 12233466788999999998644 35899
Q ss_pred EEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHh-hhcCCCHHHHHHHHHh------
Q 041382 328 VFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLM-EKVKVSPAEVAGELMK------ 400 (600)
Q Consensus 328 I~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~-~~~~~t~a~i~~~l~~------ 400 (600)
|+|||+++.|||+++||||||++|+|+.|+.++|.+|++.++..........+..++ ...++|+|||...+..
T Consensus 326 I~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Al 405 (438)
T PTZ00361 326 IMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLAL 405 (438)
T ss_pred EEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998765433222333333 3347999999987741
Q ss_pred -cCCHHHHHHHHHHHHHhh
Q 041382 401 -AKGSKTSLEDFITYLESK 418 (600)
Q Consensus 401 -~~~~~~al~~l~~~l~~~ 418 (600)
........+++.+|++..
T Consensus 406 r~~r~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 406 RERRMKVTQADFRKAKEKV 424 (438)
T ss_pred HhcCCccCHHHHHHHHHHH
Confidence 112234455555555543
No 20
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.97 E-value=1.4e-30 Score=252.89 Aligned_cols=206 Identities=17% Similarity=0.266 Sum_probs=174.4
Q ss_pred CCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCC
Q 041382 178 LDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTS 257 (600)
Q Consensus 178 ~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~ 257 (600)
.....+||+++|+++.|.... .+..|+.+|+.|..+ -|+++|||||||||||++|+|+|++.+.|++.+....+.+
T Consensus 114 ~~~~it~ddViGqEeAK~kcr-li~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liG 189 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCR-LIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIG 189 (368)
T ss_pred hhccccHhhhhchHHHHHHHH-HHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHH
Confidence 345579999999999988764 566799999998776 3679999999999999999999999999999999888753
Q ss_pred ------hhHHHHHHhhCC--CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEE
Q 041382 258 ------DSSLEYLLLHVP--NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVF 329 (600)
Q Consensus 258 ------~~~l~~~~~~~~--~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~ 329 (600)
...++.++..+. +|||+||||+|++.- +|+-+. -.+.....++.||..|||+.+. ++++.|+
T Consensus 190 ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaL--dRryQe------lRGDVsEiVNALLTelDgi~en--eGVvtIa 259 (368)
T COG1223 190 EHVGDGARRIHELYERARKAAPCIVFIDELDAIAL--DRRYQE------LRGDVSEIVNALLTELDGIKEN--EGVVTIA 259 (368)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhh--hhhHHH------hcccHHHHHHHHHHhccCcccC--CceEEEe
Confidence 367888888874 799999999999964 443331 2345667899999999999755 5699999
Q ss_pred ecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhhh-cCCCHHHHHHHHH
Q 041382 330 TTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLMEK-VKVSPAEVAGELM 399 (600)
Q Consensus 330 TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~~-~~~t~a~i~~~l~ 399 (600)
+||+|+.||||+++ ||...|+|..|+.++|..|++.|....+.+....++.+... .++|+.||.+-++
T Consensus 260 aTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvl 328 (368)
T COG1223 260 ATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVL 328 (368)
T ss_pred ecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHH
Confidence 99999999999999 99999999999999999999999998887776666666554 3799999999776
No 21
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.8e-30 Score=278.99 Aligned_cols=309 Identities=21% Similarity=0.229 Sum_probs=236.3
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC---
Q 041382 180 HPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT--- 256 (600)
Q Consensus 180 ~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~--- 256 (600)
++.+ ++++|...+...+.+.+..++.++..|...|.++|+|+|+|||||||||.+++|+|++.+..++.+++..+.
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 6677 889999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred ---ChhHHHHHHhhCC--C-cceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEe
Q 041382 257 ---SDSSLEYLLLHVP--N-RSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFT 330 (600)
Q Consensus 257 ---~~~~l~~~~~~~~--~-~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~T 330 (600)
+++.+++.|..+. + |+||||||||.+++ +|... ......+.++|+..|||+.+. ..+|+++|
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p--~r~~~--------~~~e~Rv~sqlltL~dg~~~~--~~vivl~a 326 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCP--KREGA--------DDVESRVVSQLLTLLDGLKPD--AKVIVLAA 326 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCC--ccccc--------chHHHHHHHHHHHHHhhCcCc--CcEEEEEe
Confidence 5688999998884 4 99999999999987 44322 114678899999999999644 45999999
Q ss_pred cCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhh-hcCCCHHHHHHHHHhcCCHHHHHH
Q 041382 331 TNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLME-KVKVSPAEVAGELMKAKGSKTSLE 409 (600)
Q Consensus 331 TN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~-~~~~t~a~i~~~l~~~~~~~~al~ 409 (600)
||+|+.|||+++| ||||..++++.|+..+|.+|++.+.....+....++..+.. ..+|++||+...+- ++++.
T Consensus 327 tnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~-----ea~~~ 400 (693)
T KOG0730|consen 327 TNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCR-----EASLQ 400 (693)
T ss_pred cCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHH-----HHHHH
Confidence 9999999999999 99999999999999999999999988877664455555543 45899999998874 44555
Q ss_pred HHHHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCcc-hhhHHHHHHHHHH
Q 041382 410 DFITYLESKESQEEKSSTAPPLASNVDGNRPEPQENGNNISKSGVQDQSSHTETEAADMGNVGGYS-VKAEFANIIKAIF 488 (600)
Q Consensus 410 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~~~s~~~~~~~~~v~v~g~~-v~~~~~~~v~~~~ 488 (600)
.+.+-++..... .. ...++.....- -+..+..|.||||++ +|..+.++|.|+
T Consensus 401 ~~r~~~~~~~~A----------------------~~--~i~psa~Re~~--ve~p~v~W~dIGGlE~lK~elq~~V~~p- 453 (693)
T KOG0730|consen 401 ATRRTLEIFQEA----------------------LM--GIRPSALREIL--VEMPNVSWDDIGGLEELKRELQQAVEWP- 453 (693)
T ss_pred HhhhhHHHHHHH----------------------Hh--cCCchhhhhee--ccCCCCChhhccCHHHHHHHHHHHHhhh-
Confidence 444411000000 00 00001110000 112258899999999 999999999999
Q ss_pred hhhhHHHhcCccchhhHHHH-----HH-HHHHHHHHHHhccccccccHHHHH
Q 041382 489 SKHGDIAANSCLQSKQCRSS-----LL-EIVCRIIQKLQKAKLKDLKETELK 534 (600)
Q Consensus 489 ~k~~di~~~~~~~~~~~r~~-----~~-~~l~~vi~~l~~~p~~~ls~~el~ 534 (600)
.+||+.|..+-.+-+.=.=. |- ..++..+++.|+.+.=.++-.|+-
T Consensus 454 ~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~ 505 (693)
T KOG0730|consen 454 LKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELF 505 (693)
T ss_pred hhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHH
Confidence 99999999998544321110 11 236777777777776665554443
No 22
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=3e-30 Score=281.43 Aligned_cols=207 Identities=23% Similarity=0.314 Sum_probs=163.1
Q ss_pred CCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCc----------E
Q 041382 178 LDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYD----------I 247 (600)
Q Consensus 178 ~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~----------~ 247 (600)
..++.+|++|+|.+.+++.|.+.+..++.+++.|+..|+++|+|+|||||||||||++++++|++++.+ +
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 445689999999999999999999999999999999999999999999999999999999999998765 2
Q ss_pred EEEecCccC------ChhHHHHHHhhCC------CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhc
Q 041382 248 YNLNLSVVT------SDSSLEYLLLHVP------NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAID 315 (600)
Q Consensus 248 ~~l~~~~~~------~~~~l~~~~~~~~------~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ld 315 (600)
+.+..+.+. +...++.+|..+. .||||||||+|+++. .|+.+. ........+++||+.||
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~--~R~~~~------s~d~e~~il~~LL~~LD 326 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFR--TRGSGV------SSDVETTVVPQLLSELD 326 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhc--ccCCCc------cchHHHHHHHHHHHHhc
Confidence 333333322 2345666665542 699999999999975 443221 11234567899999999
Q ss_pred CccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhhhcCCCHHHHH
Q 041382 316 GLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLMEKVKVSPAEVA 395 (600)
Q Consensus 316 g~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~~~~~t~a~i~ 395 (600)
|+.+. +++++|+|||+++.|||||+||||||.+|+|++|+.++|++|++.|+... .+....+ ....+++.+++.
T Consensus 327 gl~~~--~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~-l~l~~~l---~~~~g~~~a~~~ 400 (512)
T TIGR03689 327 GVESL--DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDS-LPLDADL---AEFDGDREATAA 400 (512)
T ss_pred ccccC--CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhcc-CCchHHH---HHhcCCCHHHHH
Confidence 99765 35999999999999999999999999999999999999999999998742 2222222 233456666666
Q ss_pred HHH
Q 041382 396 GEL 398 (600)
Q Consensus 396 ~~l 398 (600)
..+
T Consensus 401 al~ 403 (512)
T TIGR03689 401 ALI 403 (512)
T ss_pred HHH
Confidence 554
No 23
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=7.5e-30 Score=282.76 Aligned_cols=232 Identities=23% Similarity=0.333 Sum_probs=184.5
Q ss_pred CCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC-
Q 041382 178 LDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT- 256 (600)
Q Consensus 178 ~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~- 256 (600)
-.+..+|++++|.+++|+++.+.+. ++.+++.|...|.++++|+|||||||||||++++++|++++.+++.++++.+.
T Consensus 48 ~~~~~~~~di~g~~~~k~~l~~~~~-~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 126 (495)
T TIGR01241 48 EKPKVTFKDVAGIDEAKEELMEIVD-FLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 126 (495)
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHH-HHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHH
Confidence 3556899999999999999997665 68899999999999999999999999999999999999999999999987653
Q ss_pred -----ChhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEE
Q 041382 257 -----SDSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVF 329 (600)
Q Consensus 257 -----~~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~ 329 (600)
+...++.+|..+ ..||||||||||.+.. .|..... ........++++||+.||++... .+++||+
T Consensus 127 ~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~--~r~~~~~----~~~~~~~~~~~~lL~~~d~~~~~--~~v~vI~ 198 (495)
T TIGR01241 127 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGR--QRGAGLG----GGNDEREQTLNQLLVEMDGFGTN--TGVIVIA 198 (495)
T ss_pred HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhh--ccccCcC----CccHHHHHHHHHHHhhhccccCC--CCeEEEE
Confidence 346788888776 4799999999999975 3432111 12234567889999999998655 3499999
Q ss_pred ecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhhh-cCCCHHHHHHHHHh-------c
Q 041382 330 TTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLMEK-VKVSPAEVAGELMK-------A 401 (600)
Q Consensus 330 TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~~-~~~t~a~i~~~l~~-------~ 401 (600)
|||+++.|||||+||||||.+|+++.|+.++|.+|++.++..........+..+... .++|++||...+.. .
T Consensus 199 aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~ 278 (495)
T TIGR01241 199 ATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARK 278 (495)
T ss_pred ecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999876544333344444443 36999999887631 1
Q ss_pred CCHHHHHHHHHHHHHhh
Q 041382 402 KGSKTSLEDFITYLESK 418 (600)
Q Consensus 402 ~~~~~al~~l~~~l~~~ 418 (600)
.......+++.+++++.
T Consensus 279 ~~~~i~~~~l~~a~~~~ 295 (495)
T TIGR01241 279 NKTEITMNDIEEAIDRV 295 (495)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 22234456666666654
No 24
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=1.1e-29 Score=293.66 Aligned_cols=222 Identities=20% Similarity=0.270 Sum_probs=184.3
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC---
Q 041382 180 HPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT--- 256 (600)
Q Consensus 180 ~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~--- 256 (600)
+..+|++++|.+.+|+.+.+.+..++.+++.|..+|..+++|+|||||||||||++|+++|++++.+++.++++.+.
T Consensus 448 ~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 448 PNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKW 527 (733)
T ss_pred cccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999987653
Q ss_pred ---ChhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEec
Q 041382 257 ---SDSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTT 331 (600)
Q Consensus 257 ---~~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TT 331 (600)
++..++.+|..+ ..||||||||||.+++ .|+... ........+++||..|||+... .+++||+||
T Consensus 528 vGese~~i~~~f~~A~~~~p~iifiDEid~l~~--~r~~~~------~~~~~~~~~~~lL~~ldg~~~~--~~v~vI~aT 597 (733)
T TIGR01243 528 VGESEKAIREIFRKARQAAPAIIFFDEIDAIAP--ARGARF------DTSVTDRIVNQLLTEMDGIQEL--SNVVVIAAT 597 (733)
T ss_pred cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhc--cCCCCC------CccHHHHHHHHHHHHhhcccCC--CCEEEEEeC
Confidence 456788888776 4799999999999986 443221 1234567889999999998654 459999999
Q ss_pred CCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhhh-cCCCHHHHHHHHHhcCCHHHHHHH
Q 041382 332 NYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLMEK-VKVSPAEVAGELMKAKGSKTSLED 410 (600)
Q Consensus 332 N~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~~-~~~t~a~i~~~l~~~~~~~~al~~ 410 (600)
|+++.||||++||||||..|++|+|+.++|.+||+.++.........++..++.. .++|++||...+. ++++.+
T Consensus 598 n~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~-----~A~~~a 672 (733)
T TIGR01243 598 NRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCR-----EAAMAA 672 (733)
T ss_pred CChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHH-----HHHHHH
Confidence 9999999999999999999999999999999999988876544333334444433 3699999998763 566666
Q ss_pred HHHHHH
Q 041382 411 FITYLE 416 (600)
Q Consensus 411 l~~~l~ 416 (600)
+.+.+.
T Consensus 673 ~~~~~~ 678 (733)
T TIGR01243 673 LRESIG 678 (733)
T ss_pred HHHHhh
Confidence 666554
No 25
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.5e-29 Score=258.08 Aligned_cols=220 Identities=20% Similarity=0.256 Sum_probs=186.3
Q ss_pred CCCccccccChhHHHHHHHHHHHHHhCHHHHHHhC-CCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCCh-
Q 041382 181 PMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIG-KVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSD- 258 (600)
Q Consensus 181 p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g-~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~~- 258 (600)
-++|++++|.+.+|+.+.+.+..++++|++|...+ ..+++|+|||||||||||++|+|+|++.|.+++.+..+.+.++
T Consensus 88 ~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KW 167 (386)
T KOG0737|consen 88 GVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKW 167 (386)
T ss_pred eeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhh
Confidence 36899999999999999999999999999997544 4577899999999999999999999999999999999988753
Q ss_pred -----hHHHHHHhhCC--CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEec
Q 041382 259 -----SSLEYLLLHVP--NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTT 331 (600)
Q Consensus 259 -----~~l~~~~~~~~--~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TT 331 (600)
..++.+|.-+. +||||||||+|.+++ .|.. ..+......-++|...+||+.+..+..++|+++|
T Consensus 168 fgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~--~R~s-------~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgAT 238 (386)
T KOG0737|consen 168 FGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLG--QRRS-------TDHEATAMMKNEFMALWDGLSSKDSERVLVLGAT 238 (386)
T ss_pred HHHHHHHHHHHHhhhhhcCcceeehhhHHHHHh--hccc-------chHHHHHHHHHHHHHHhccccCCCCceEEEEeCC
Confidence 33455555554 799999999999987 4421 2345567788899999999998877779999999
Q ss_pred CCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCc---cHHHHHHHhhhcCCCHHHHHHHHHhcCCHHHHH
Q 041382 332 NYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHD---LYCHIEKLMEKVKVSPAEVAGELMKAKGSKTSL 408 (600)
Q Consensus 332 N~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~---~~~~i~~l~~~~~~t~a~i~~~l~~~~~~~~al 408 (600)
|+|..||.|++| ||.+.++++.|+.++|.+|++-+|..+... ...+++...+ +||++|+.+.+. .+++
T Consensus 239 NRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~--GySGSDLkelC~-----~Aa~ 309 (386)
T KOG0737|consen 239 NRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTE--GYSGSDLKELCR-----LAAL 309 (386)
T ss_pred CCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcC--CCcHHHHHHHHH-----HHhH
Confidence 999999999999 999999999999999999999999876543 3444444433 699999999985 7888
Q ss_pred HHHHHHHHhh
Q 041382 409 EDFITYLESK 418 (600)
Q Consensus 409 ~~l~~~l~~~ 418 (600)
..+++.+...
T Consensus 310 ~~ire~~~~~ 319 (386)
T KOG0737|consen 310 RPIRELLVSE 319 (386)
T ss_pred hHHHHHHHhc
Confidence 9999998875
No 26
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.96 E-value=4e-29 Score=273.04 Aligned_cols=205 Identities=23% Similarity=0.239 Sum_probs=163.4
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC---
Q 041382 180 HPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT--- 256 (600)
Q Consensus 180 ~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~--- 256 (600)
.+.+|++|+|.+.+|+.+.+....|. ..+...|.++|+|+|||||||||||++|+++|++++.+++.++++.+.
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~~~---~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTSFS---KQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHhh---HHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 34689999999999998887655443 345678999999999999999999999999999999999999987654
Q ss_pred ---ChhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEec
Q 041382 257 ---SDSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTT 331 (600)
Q Consensus 257 ---~~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TT 331 (600)
++..++.+|..+ .+||||||||||.++. .+... +..+.....++.|+..|+.. ..+++||+||
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~--~~~~~------~d~~~~~rvl~~lL~~l~~~----~~~V~vIaTT 367 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFS--NSESK------GDSGTTNRVLATFITWLSEK----KSPVFVVATA 367 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhc--cccCC------CCchHHHHHHHHHHHHHhcC----CCceEEEEec
Confidence 356788888754 5899999999999875 22111 12344567888899988853 2459999999
Q ss_pred CCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCc--cHHHHHHHhhh-cCCCHHHHHHHHH
Q 041382 332 NYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHD--LYCHIEKLMEK-VKVSPAEVAGELM 399 (600)
Q Consensus 332 N~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~--~~~~i~~l~~~-~~~t~a~i~~~l~ 399 (600)
|+++.|||+++||||||..|+++.|+.++|.+|++.++...... ....+..+... .+||+|||...+.
T Consensus 368 N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~ 438 (489)
T CHL00195 368 NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSII 438 (489)
T ss_pred CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999764321 12334444433 3799999998764
No 27
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.7e-28 Score=272.29 Aligned_cols=210 Identities=26% Similarity=0.347 Sum_probs=178.5
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC--
Q 041382 179 DHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT-- 256 (600)
Q Consensus 179 ~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~-- 256 (600)
.+..+|++++|.+..|+.+.+.+..++.+++.|...|+.+++|+|||||||||||++|+|+|++++.+|+.++.+++.
T Consensus 236 ~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk 315 (494)
T COG0464 236 DEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSK 315 (494)
T ss_pred CCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcc
Confidence 445799999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred ----ChhHHHHHHhhCC--CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEe
Q 041382 257 ----SDSSLEYLLLHVP--NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFT 330 (600)
Q Consensus 257 ----~~~~l~~~~~~~~--~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~T 330 (600)
++..++.+|..+. +||||||||+|++.+ .|.... .......+++||..|||+... .++++|+|
T Consensus 316 ~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~--~r~~~~-------~~~~~r~~~~lL~~~d~~e~~--~~v~vi~a 384 (494)
T COG0464 316 WVGESEKNIRELFEKARKLAPSIIFIDEIDSLAS--GRGPSE-------DGSGRRVVGQLLTELDGIEKA--EGVLVIAA 384 (494)
T ss_pred ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhc--cCCCCC-------chHHHHHHHHHHHHhcCCCcc--CceEEEec
Confidence 4578899998885 799999999999986 443221 122368999999999999665 44999999
Q ss_pred cCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCc--cHHHHHHHhh-hcCCCHHHHHHHHH
Q 041382 331 TNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHD--LYCHIEKLME-KVKVSPAEVAGELM 399 (600)
Q Consensus 331 TN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~--~~~~i~~l~~-~~~~t~a~i~~~l~ 399 (600)
||+|+.+|||++||||||..|++|+|+.++|.+|++.++...... .......+.+ ..++|++||...+.
T Consensus 385 TN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ 456 (494)
T COG0464 385 TNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVR 456 (494)
T ss_pred CCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999854432 1223333333 33599999998874
No 28
>CHL00176 ftsH cell division protein; Validated
Probab=99.96 E-value=1.3e-28 Score=276.84 Aligned_cols=232 Identities=24% Similarity=0.319 Sum_probs=183.9
Q ss_pred CCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC-
Q 041382 178 LDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT- 256 (600)
Q Consensus 178 ~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~- 256 (600)
.....+|++++|.+++|+.+.+.+ .+++.+..|...|..+++|+|||||||||||++|+++|++++.+++.++++.+.
T Consensus 176 ~~~~~~f~dv~G~~~~k~~l~eiv-~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~ 254 (638)
T CHL00176 176 ADTGITFRDIAGIEEAKEEFEEVV-SFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE 254 (638)
T ss_pred cCCCCCHHhccChHHHHHHHHHHH-HHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH
Confidence 445679999999999999987655 678889999999999999999999999999999999999999999999988764
Q ss_pred -----ChhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEE
Q 041382 257 -----SDSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVF 329 (600)
Q Consensus 257 -----~~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~ 329 (600)
+...++.+|..+ ..||||||||||++.. .|+...+ +.......+++.||..||++... .++++|+
T Consensus 255 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~--~r~~~~~----~~~~e~~~~L~~LL~~~dg~~~~--~~ViVIa 326 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGR--QRGAGIG----GGNDEREQTLNQLLTEMDGFKGN--KGVIVIA 326 (638)
T ss_pred HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhh--cccCCCC----CCcHHHHHHHHHHHhhhccccCC--CCeeEEE
Confidence 335677778776 4799999999999975 4432211 12334567899999999998654 3599999
Q ss_pred ecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhhh-cCCCHHHHHHHHHh-------c
Q 041382 330 TTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLMEK-VKVSPAEVAGELMK-------A 401 (600)
Q Consensus 330 TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~~-~~~t~a~i~~~l~~-------~ 401 (600)
|||+++.+||||+||||||++|+++.|+.++|.+|++.++..........+..+... .++|++|+...+-. .
T Consensus 327 aTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~ 406 (638)
T CHL00176 327 ATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARR 406 (638)
T ss_pred ecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999976443334445555543 36999999987631 1
Q ss_pred CCHHHHHHHHHHHHHhh
Q 041382 402 KGSKTSLEDFITYLESK 418 (600)
Q Consensus 402 ~~~~~al~~l~~~l~~~ 418 (600)
.......+++.+++.+.
T Consensus 407 ~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 407 KKATITMKEIDTAIDRV 423 (638)
T ss_pred CCCCcCHHHHHHHHHHH
Confidence 22223455666666554
No 29
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2e-29 Score=248.87 Aligned_cols=205 Identities=22% Similarity=0.267 Sum_probs=172.6
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCC--
Q 041382 180 HPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTS-- 257 (600)
Q Consensus 180 ~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~-- 257 (600)
+.+.|++|+|.+..|+++.+.+..+++-|.+|..-.+|| +|+|||||||||||.||+|+|.+.+-.|+.++.+++.+
T Consensus 128 PNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~Pw-rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKW 206 (439)
T KOG0739|consen 128 PNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPW-RGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKW 206 (439)
T ss_pred CCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcc-eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHH
Confidence 446899999999999999999999999999998877777 59999999999999999999999999999999998863
Q ss_pred ----hhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEec
Q 041382 258 ----DSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTT 331 (600)
Q Consensus 258 ----~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TT 331 (600)
+.-++.+|.-+ ..||||||||||.+++ .|..+ +...+++.-.+||-.|.|+-.. .++++++++|
T Consensus 207 mGESEkLVknLFemARe~kPSIIFiDEiDslcg--~r~en-------EseasRRIKTEfLVQMqGVG~d-~~gvLVLgAT 276 (439)
T KOG0739|consen 207 MGESEKLVKNLFEMARENKPSIIFIDEIDSLCG--SRSEN-------ESEASRRIKTEFLVQMQGVGND-NDGVLVLGAT 276 (439)
T ss_pred hccHHHHHHHHHHHHHhcCCcEEEeehhhhhcc--CCCCC-------chHHHHHHHHHHHHhhhccccC-CCceEEEecC
Confidence 34456676655 4799999999999986 44322 3455678888999999998543 4579999999
Q ss_pred CCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccH-HHHHHHhhh-cCCCHHHHHHH
Q 041382 332 NYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLY-CHIEKLMEK-VKVSPAEVAGE 397 (600)
Q Consensus 332 N~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~-~~i~~l~~~-~~~t~a~i~~~ 397 (600)
|-|+.||.|++| ||+..|++|.|...+|..+++..++..+|.+. .++..|... .+||++||.-.
T Consensus 277 NiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisiv 342 (439)
T KOG0739|consen 277 NIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIV 342 (439)
T ss_pred CCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEE
Confidence 999999999999 99999999999999999999999998887764 344445443 36999998643
No 30
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.96 E-value=4.9e-28 Score=279.96 Aligned_cols=330 Identities=21% Similarity=0.268 Sum_probs=227.5
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC---
Q 041382 180 HPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT--- 256 (600)
Q Consensus 180 ~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~--- 256 (600)
+..+|++|+|.+++++.|.+.+..++.+++.|..+|+.+++|+|||||||||||++++++|++++.+++.+++..+.
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~ 252 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY 252 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred ---ChhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEec
Q 041382 257 ---SDSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTT 331 (600)
Q Consensus 257 ---~~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TT 331 (600)
+...++.+|..+ ..|+||||||||.+.+ .|... ........++.|++.||++... ..+++|+||
T Consensus 253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~--~r~~~-------~~~~~~~~~~~Ll~~ld~l~~~--~~vivI~at 321 (733)
T TIGR01243 253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAP--KREEV-------TGEVEKRVVAQLLTLMDGLKGR--GRVIVIGAT 321 (733)
T ss_pred ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcc--cccCC-------cchHHHHHHHHHHHHhhccccC--CCEEEEeec
Confidence 235677788765 4689999999999975 33211 1123356788999999998654 358999999
Q ss_pred CCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhh-hcCCCHHHHHHHHHhcCCHHHHHHH
Q 041382 332 NYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLME-KVKVSPAEVAGELMKAKGSKTSLED 410 (600)
Q Consensus 332 N~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~-~~~~t~a~i~~~l~~~~~~~~al~~ 410 (600)
|+++.||+++.|||||+..|+++.|+.++|.+|++.+...........+..+.. ..+++++++...+. ++++..
T Consensus 322 n~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~-----~a~~~a 396 (733)
T TIGR01243 322 NRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAK-----EAAMAA 396 (733)
T ss_pred CChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHH-----HHHHHH
Confidence 999999999999999999999999999999999998776543322222333333 24699999987653 445555
Q ss_pred HHHHHHhhhccccccCCC-C-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCcc-hhhHHHHHHHHH
Q 041382 411 FITYLESKESQEEKSSTA-P-PLASNVDGNRPEPQENGNNISKSGVQDQSSHTETEAADMGNVGGYS-VKAEFANIIKAI 487 (600)
Q Consensus 411 l~~~l~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~S~~~~~~~~s~~~~~~~~~v~v~g~~-v~~~~~~~v~~~ 487 (600)
+.+.+......-...... . .........+...+.. ...++.... ..-......|.+++|++ ++..+.+.+.|+
T Consensus 397 l~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~--~v~ps~~~~--~~~~~~~~~~~di~g~~~~k~~l~~~v~~~ 472 (733)
T TIGR01243 397 LRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALK--MVEPSAIRE--VLVEVPNVRWSDIGGLEEVKQELREAVEWP 472 (733)
T ss_pred HHHHhhccccccccccccchhcccccccHHHHHHHHh--hccccccch--hhccccccchhhcccHHHHHHHHHHHHHhh
Confidence 544443211110000000 0 0000000000000000 000111000 00112246889999999 999999999999
Q ss_pred HhhhhHHHhcCccchhhHHHHHH---------HHHHHHHHHHhccccccccHHHH
Q 041382 488 FSKHGDIAANSCLQSKQCRSSLL---------EIVCRIIQKLQKAKLKDLKETEL 533 (600)
Q Consensus 488 ~~k~~di~~~~~~~~~~~r~~~~---------~~l~~vi~~l~~~p~~~ls~~el 533 (600)
.+||+++..+....+.- ++ ..++..++..++.|.-.++-.++
T Consensus 473 -~~~~~~~~~~g~~~~~g---iLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l 523 (733)
T TIGR01243 473 -LKHPEIFEKMGIRPPKG---VLLFGPPGTGKTLLAKAVATESGANFIAVRGPEI 523 (733)
T ss_pred -hhCHHHHHhcCCCCCce---EEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHH
Confidence 89999999886544321 11 23555666666666666655543
No 31
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.8e-29 Score=247.34 Aligned_cols=208 Identities=25% Similarity=0.304 Sum_probs=173.7
Q ss_pred CCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCC---
Q 041382 181 PMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTS--- 257 (600)
Q Consensus 181 p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~--- 257 (600)
..+|+.+.|.-++..++++.++.++.++..|.++|+.+|.|++||||||||||.+|+++|..++.+++.+..+.+.+
T Consensus 128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyi 207 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYI 207 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhc
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999888863
Q ss_pred ---hhHHHHHHhhCC--CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecC
Q 041382 258 ---DSSLEYLLLHVP--NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTN 332 (600)
Q Consensus 258 ---~~~l~~~~~~~~--~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN 332 (600)
..-++..|..+. .|||||+||||++++ .|..+ + .......+.||..|+|.|||+.... .+-+|+|||
T Consensus 208 GEsaRlIRemf~yA~~~~pciifmdeiDAigG--Rr~se-~---Ts~dreiqrTLMeLlnqmdgfd~l~--rVk~ImatN 279 (388)
T KOG0651|consen 208 GESARLIRDMFRYAREVIPCIIFMDEIDAIGG--RRFSE-G---TSSDREIQRTLMELLNQMDGFDTLH--RVKTIMATN 279 (388)
T ss_pred ccHHHHHHHHHHHHhhhCceEEeehhhhhhcc--EEecc-c---cchhHHHHHHHHHHHHhhccchhcc--cccEEEecC
Confidence 355777777774 699999999999986 33222 1 1234567899999999999997664 489999999
Q ss_pred CcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcC---cCCCccHHHHHHHhhhcCCCHHHHHHHH
Q 041382 333 YKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLD---INDHDLYCHIEKLMEKVKVSPAEVAGEL 398 (600)
Q Consensus 333 ~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~---~~~~~~~~~i~~l~~~~~~t~a~i~~~l 398 (600)
+|+.|||||+||||+|+.+++|.|+...|..|++-.-. ....-.++.+..+.+. +.++++...+
T Consensus 280 rpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~--f~gad~rn~~ 346 (388)
T KOG0651|consen 280 RPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDG--FNGADLRNVC 346 (388)
T ss_pred CccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhc--cChHHHhhhc
Confidence 99999999999999999999999999999998774432 2233345666666655 7788866544
No 32
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.96 E-value=9e-28 Score=256.46 Aligned_cols=214 Identities=24% Similarity=0.270 Sum_probs=171.9
Q ss_pred ccCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCcc
Q 041382 176 VNLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVV 255 (600)
Q Consensus 176 v~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~ 255 (600)
+...+..+|++++|.++++++|.+.+..++.+++.|..+|..+++|+|||||||||||++|+++|+.++.+++.+..+.+
T Consensus 113 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l 192 (364)
T TIGR01242 113 VEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 192 (364)
T ss_pred eccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHH
Confidence 44556679999999999999999999999999999999999999999999999999999999999999999998876654
Q ss_pred CC------hhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEE
Q 041382 256 TS------DSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKIT 327 (600)
Q Consensus 256 ~~------~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ii 327 (600)
.. ...++.+|..+ ..|+||||||+|.+.. .|..... +.......++..+++.++++... .++.|
T Consensus 193 ~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~--~~~~~~~----~~~~~~~~~l~~ll~~ld~~~~~--~~v~v 264 (364)
T TIGR01242 193 VRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAA--KRTDSGT----SGDREVQRTLMQLLAELDGFDPR--GNVKV 264 (364)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhcc--ccccCCC----CccHHHHHHHHHHHHHhhCCCCC--CCEEE
Confidence 31 23455566544 4799999999999975 3322111 12334567788999999987543 35899
Q ss_pred EEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCc---cHHHHHHHhhhcCCCHHHHHHHHH
Q 041382 328 VFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHD---LYCHIEKLMEKVKVSPAEVAGELM 399 (600)
Q Consensus 328 I~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~---~~~~i~~l~~~~~~t~a~i~~~l~ 399 (600)
|+|||+++.+|++++||||||..|+|+.|+.++|.+|++.++...... ....+.... .++|++|+...+.
T Consensus 265 I~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t--~g~sg~dl~~l~~ 337 (364)
T TIGR01242 265 IAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMT--EGASGADLKAICT 337 (364)
T ss_pred EEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHc--CCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999988654322 234444433 3699999998764
No 33
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.95 E-value=2.5e-27 Score=244.33 Aligned_cols=208 Identities=15% Similarity=0.112 Sum_probs=150.3
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC--
Q 041382 179 DHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT-- 256 (600)
Q Consensus 179 ~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~-- 256 (600)
....+|+.+.|.=.+-...++-+.... .+.+....|+.+|+|++||||||||||++|+++|+++|.+++.++.+++.
T Consensus 109 ~~~~~f~~~~g~~~~~p~f~dk~~~hi-~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk 187 (413)
T PLN00020 109 QRTRSFDNLVGGYYIAPAFMDKVAVHI-AKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE 187 (413)
T ss_pred hhhcchhhhcCccccCHHHHHHHHHHH-HhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcC
Confidence 344567776443333333333222111 23445557899999999999999999999999999999999999988875
Q ss_pred ----ChhHHHHHHhhCC-------CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCc--------
Q 041382 257 ----SDSSLEYLLLHVP-------NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGL-------- 317 (600)
Q Consensus 257 ----~~~~l~~~~~~~~-------~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~-------- 317 (600)
++..++.+|..+. +||||||||||++++ .|+... .....+...+.||+.||+.
T Consensus 188 ~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g--~r~~~~------~tv~~qiV~~tLLnl~D~p~~v~l~G~ 259 (413)
T PLN00020 188 NAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAG--RFGTTQ------YTVNNQMVNGTLMNIADNPTNVSLGGD 259 (413)
T ss_pred cCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCC--CCCCCC------cchHHHHHHHHHHHHhcCCcccccccc
Confidence 4578999997663 699999999999986 443111 1122345558999998863
Q ss_pred c--ccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhhhcCCCHHHHH
Q 041382 318 L--CCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLMEKVKVSPAEVA 395 (600)
Q Consensus 318 ~--~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~~~~~t~a~i~ 395 (600)
| ......++||+|||+|+.|||||+||||||..+ ..|+.++|.+|++.++...... ..++..++....--+-|.-
T Consensus 260 w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~ 336 (413)
T PLN00020 260 WREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFF 336 (413)
T ss_pred ccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhh
Confidence 3 122346899999999999999999999999965 5899999999999998875433 5777777766433333333
Q ss_pred HHH
Q 041382 396 GEL 398 (600)
Q Consensus 396 ~~l 398 (600)
+.|
T Consensus 337 GAl 339 (413)
T PLN00020 337 GAL 339 (413)
T ss_pred hHH
Confidence 333
No 34
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.95 E-value=2.3e-27 Score=279.49 Aligned_cols=178 Identities=15% Similarity=0.182 Sum_probs=137.6
Q ss_pred hCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCCh---------------------------
Q 041382 206 RGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSD--------------------------- 258 (600)
Q Consensus 206 ~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~~--------------------------- 258 (600)
+++..+.++|..+|+|+||+||||||||.||+|+|++.+.|++.++++++.+.
T Consensus 1617 ~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~ 1696 (2281)
T CHL00206 1617 HGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRD 1696 (2281)
T ss_pred cCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccc
Confidence 34667788999999999999999999999999999999999999988765421
Q ss_pred ----------------------hHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhh
Q 041382 259 ----------------------SSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAI 314 (600)
Q Consensus 259 ----------------------~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~l 314 (600)
..++.+|..| .+||||+|||||++.. + .....++++||+.|
T Consensus 1697 ~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~--~-------------ds~~ltL~qLLneL 1761 (2281)
T CHL00206 1697 LDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNV--N-------------ESNYLSLGLLVNSL 1761 (2281)
T ss_pred cchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCC--C-------------ccceehHHHHHHHh
Confidence 1255667665 5899999999999964 1 11224689999999
Q ss_pred cCcccc-CCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCC---CccHHHHHHHhh-hcCC
Q 041382 315 DGLLCC-CGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIND---HDLYCHIEKLME-KVKV 389 (600)
Q Consensus 315 dg~~~~-~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~---~~~~~~i~~l~~-~~~~ 389 (600)
||.... ...+++||||||+|+.|||||+||||||++|+++.|+..+|.+++...+.... ......+..++. ..++
T Consensus 1762 Dg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~Gf 1841 (2281)
T CHL00206 1762 SRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGS 1841 (2281)
T ss_pred ccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCC
Confidence 987432 23569999999999999999999999999999999999999998875432111 111112333333 2479
Q ss_pred CHHHHHHHH
Q 041382 390 SPAEVAGEL 398 (600)
Q Consensus 390 t~a~i~~~l 398 (600)
|+||++..+
T Consensus 1842 SGADLanLv 1850 (2281)
T CHL00206 1842 NARDLVALT 1850 (2281)
T ss_pred CHHHHHHHH
Confidence 999999876
No 35
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.94 E-value=1.5e-26 Score=262.59 Aligned_cols=212 Identities=24% Similarity=0.321 Sum_probs=172.6
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC--
Q 041382 179 DHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT-- 256 (600)
Q Consensus 179 ~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~-- 256 (600)
....+|+++.|.+..++++.+.+. ++..+..|...|...++|+||+||||||||++++++|++++.+++.++++++.
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~-~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~ 224 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVE-YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 224 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHH-HhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHh
Confidence 345689999999999999887664 56778888889989999999999999999999999999999999999987653
Q ss_pred ----ChhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEe
Q 041382 257 ----SDSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFT 330 (600)
Q Consensus 257 ----~~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~T 330 (600)
+...++.+|..+ ..||||||||||.++. .|....+ +.......++++||..|||+... .++++|+|
T Consensus 225 ~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~--~r~~~~~----g~~~~~~~~ln~lL~~mdg~~~~--~~vivIaa 296 (644)
T PRK10733 225 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGR--QRGAGLG----GGHDEREQTLNQMLVEMDGFEGN--EGIIVIAA 296 (644)
T ss_pred hhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhh--ccCCCCC----CCchHHHHHHHHHHHhhhcccCC--CCeeEEEe
Confidence 345677777665 4799999999999975 4432211 22344567899999999999665 45999999
Q ss_pred cCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhhh-cCCCHHHHHHHHH
Q 041382 331 TNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLMEK-VKVSPAEVAGELM 399 (600)
Q Consensus 331 TN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~~-~~~t~a~i~~~l~ 399 (600)
||+|+.||||++||||||++|+++.|+.++|.+|++.++..........+..+... .++|+|||...+.
T Consensus 297 TN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~ 366 (644)
T PRK10733 297 TNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVN 366 (644)
T ss_pred cCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999976543333333444443 4799999999874
No 36
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=99.94 E-value=9.2e-27 Score=229.57 Aligned_cols=101 Identities=49% Similarity=0.794 Sum_probs=97.2
Q ss_pred ccccccCCCcchhhHHHHHHHHHHhhhhHHHhcCccchhhHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHH
Q 041382 465 AADMGNVGGYSVKAEFANIIKAIFSKHGDIAANSCLQSKQCRSSLLEIVCRIIQKLQKAKLKDLKETELKSMLSELQDLE 544 (600)
Q Consensus 465 ~~~~v~v~g~~v~~~~~~~v~~~~~k~~di~~~~~~~~~~~r~~~~~~l~~vi~~l~~~p~~~ls~~el~~~~~~~~~L~ 544 (600)
+.++|+||||+|++++..++++||.|||||++||.++|+++|++||++||+||++|+..|+++||++++.++.+++.||+
T Consensus 83 ses~V~VngY~Vk~S~~silq~If~KHGDIAsNc~lkS~~~RS~yLe~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLe 162 (269)
T PF05278_consen 83 SESIVSVNGYQVKPSQVSILQKIFEKHGDIASNCKLKSQQFRSYYLECLCDIIQELQSTPLKELSESDLKEMIATLKDLE 162 (269)
T ss_pred ccceeeECCEEEcHhHHHHHHHHHHhCccHhhccccCcHHHHHHHHHHHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCcchhhchhHHHHHHHHHh
Q 041382 545 SMRLEVGWLRKRLDEIVEAMR 565 (600)
Q Consensus 545 ~~~~~~~wl~~~l~e~~~~~~ 565 (600)
++||+|+|||++|+||+++.+
T Consensus 163 sa~vkV~WLR~~L~Ei~Ea~e 183 (269)
T PF05278_consen 163 SAKVKVDWLRSKLEEILEAKE 183 (269)
T ss_pred HcCcchHHHHHHHHHHHHHHH
Confidence 999999999999999987744
No 37
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=9.3e-26 Score=256.72 Aligned_cols=208 Identities=20% Similarity=0.224 Sum_probs=165.6
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC-----cEEEEecCc
Q 041382 180 HPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY-----DIYNLNLSV 254 (600)
Q Consensus 180 ~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~-----~~~~l~~~~ 254 (600)
.-+.|++|+|.+.++..+.+.+..++.+|+.|...++.+|||+|||||||||||++|+|+|..+.. .++.-...+
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 346899999999999999999999999999999999999999999999999999999999998732 222222211
Q ss_pred c------CChhHHHHHHhhCC--CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeE
Q 041382 255 V------TSDSSLEYLLLHVP--NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKI 326 (600)
Q Consensus 255 ~------~~~~~l~~~~~~~~--~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~i 326 (600)
. ..+.+++-+|..+. .|+|||+||||-+.+.+.. .. .......++.||..|||+.+.+ .++
T Consensus 340 ~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSs--kq-------Eqih~SIvSTLLaLmdGldsRg--qVv 408 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSS--KQ-------EQIHASIVSTLLALMDGLDSRG--QVV 408 (1080)
T ss_pred hhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccc--hH-------HHhhhhHHHHHHHhccCCCCCC--ceE
Confidence 1 25678999998884 7999999999988763322 11 1123356788999999997764 599
Q ss_pred EEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHH-HHHhhh-cCCCHHHHHHHH
Q 041382 327 TVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHI-EKLMEK-VKVSPAEVAGEL 398 (600)
Q Consensus 327 iI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i-~~l~~~-~~~t~a~i~~~l 398 (600)
+|+|||+++.+||||+||||||+.++||+|+.++|.+|+...-....++..... ..+.+. .+|-+||+...+
T Consensus 409 vigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLC 482 (1080)
T KOG0732|consen 409 VIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALC 482 (1080)
T ss_pred EEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHH
Confidence 999999999999999999999999999999999999999988777665554333 333332 357777765554
No 38
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=8.2e-25 Score=230.99 Aligned_cols=211 Identities=20% Similarity=0.245 Sum_probs=178.1
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT 256 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~ 256 (600)
.-..++.|++++|.+..|+.+.+.+..+..++..|..+. ++.+|+||.||||||||+|++|+|.+.+..++.+..+++.
T Consensus 145 ~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLt 223 (428)
T KOG0740|consen 145 DTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLT 223 (428)
T ss_pred ccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhh
Confidence 344557899999999999999999999999999998774 4567999999999999999999999999999999998886
Q ss_pred C------hhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEE
Q 041382 257 S------DSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITV 328 (600)
Q Consensus 257 ~------~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI 328 (600)
+ +..++.+|.-+ .+|+|+||||||.++. .|.. .....+.....++|..+++..+...+.+++|
T Consensus 224 sK~~Ge~eK~vralf~vAr~~qPsvifidEidslls--~Rs~-------~e~e~srr~ktefLiq~~~~~s~~~drvlvi 294 (428)
T KOG0740|consen 224 SKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLS--KRSD-------NEHESSRRLKTEFLLQFDGKNSAPDDRVLVI 294 (428)
T ss_pred hhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHh--hcCC-------cccccchhhhhHHHhhhccccCCCCCeEEEE
Confidence 3 34566777555 4899999999999986 5522 2345667788899999999988888889999
Q ss_pred EecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccH-HHHHHHhhhc-CCCHHHHHHHHH
Q 041382 329 FTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLY-CHIEKLMEKV-KVSPAEVAGELM 399 (600)
Q Consensus 329 ~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~-~~i~~l~~~~-~~t~a~i~~~l~ 399 (600)
+|||.|+.+|.|++| ||...+++|.|+.++|..+|.+++....+.+. .+++.+++-+ +||.+||.+.+.
T Consensus 295 gaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~k 365 (428)
T KOG0740|consen 295 GATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCK 365 (428)
T ss_pred ecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHH
Confidence 999999999999999 99999999999999999999999987755443 4555554432 699999998875
No 39
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.9e-24 Score=226.00 Aligned_cols=209 Identities=23% Similarity=0.279 Sum_probs=158.9
Q ss_pred CCCCCcccc--ccChhHHHHHHH-HHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCc-EEEEecCc
Q 041382 179 DHPMTFGTL--VMDGDLKETVLN-DLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYD-IYNLNLSV 254 (600)
Q Consensus 179 ~~p~~f~~l--~g~~~~k~~i~~-~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~-~~~l~~~~ 254 (600)
.+.-.|+++ +|.+..-..|.. ......-.|+.-.++|++.-+|+|||||||||||.+|+.|..-|+.. --.++...
T Consensus 213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe 292 (744)
T KOG0741|consen 213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE 292 (744)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH
Confidence 333468875 555544444432 22233335888899999999999999999999999999999999753 33345444
Q ss_pred c------CChhHHHHHHhhCC----------CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCcc
Q 041382 255 V------TSDSSLEYLLLHVP----------NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLL 318 (600)
Q Consensus 255 ~------~~~~~l~~~~~~~~----------~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~ 318 (600)
+ .++.++|++|..+. .--||++||||+++. .|++.. ++.+.....+++||.-|||..
T Consensus 293 IL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICK--qRGS~~-----g~TGVhD~VVNQLLsKmDGVe 365 (744)
T KOG0741|consen 293 ILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICK--QRGSMA-----GSTGVHDTVVNQLLSKMDGVE 365 (744)
T ss_pred HHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHH--hcCCCC-----CCCCccHHHHHHHHHhcccHH
Confidence 3 26789999998873 235999999999986 554433 234556678999999999997
Q ss_pred ccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcC-------CCccHHHHHHHhhhcCCCH
Q 041382 319 CCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIN-------DHDLYCHIEKLMEKVKVSP 391 (600)
Q Consensus 319 ~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~-------~~~~~~~i~~l~~~~~~t~ 391 (600)
.- +++++|+.||+++.+|.||+|||||..+++++.||+..|.+|++.+.... ......+++.+... ||+
T Consensus 366 qL--NNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKN--fSG 441 (744)
T KOG0741|consen 366 QL--NNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKN--FSG 441 (744)
T ss_pred hh--hcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcC--Cch
Confidence 66 45999999999999999999999999999999999999999988665432 23344556555544 999
Q ss_pred HHHHHHH
Q 041382 392 AEVAGEL 398 (600)
Q Consensus 392 a~i~~~l 398 (600)
|++.+.+
T Consensus 442 AEleglV 448 (744)
T KOG0741|consen 442 AELEGLV 448 (744)
T ss_pred hHHHHHH
Confidence 9998876
No 40
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=99.86 E-value=1.7e-21 Score=168.37 Aligned_cols=93 Identities=32% Similarity=0.547 Sum_probs=86.0
Q ss_pred hCcHHHH----HHHHhhhc-CCCCcEEEEEecCCCCCcchHHHHHHHHhccCccCCCCCcceeEecccCCCccceeeccC
Q 041382 21 MIPDEVR----GYIWSITR-RFSTEITMIIKESHDGSTNRLFKAVVTYLDGHALSNSVLPKRLTVGKNENVRNFTYGLER 95 (600)
Q Consensus 21 ~~P~~l~----~~~~~l~~-~~~~~~ti~i~e~~~~~~n~ly~a~~~YL~t~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 95 (600)
|+|++|| +++++++. +++||+||+|+|++|+.+|++|+|+++||+++ ++++++||++++.+++++++++|++
T Consensus 1 ~~P~~lr~~~~~~~~~~~~~~~s~~~ti~I~E~~g~~~N~ly~a~~~YL~s~---~s~~a~rL~~~~~~~~~~~~l~l~~ 77 (98)
T PF14363_consen 1 LLPHELRSYLRSLLRRLFSSRFSPYLTIVIPEFDGLSRNELYDAAQAYLSSK---ISPSARRLKASKSKNSKNLVLSLDD 77 (98)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCCcEEEEEEeCCCccccHHHHHHHHHHhhc---cCcccceeeecccCCCCceEEecCC
Confidence 6899999 44555554 89999999999999999999999999999999 9999999999999999999999999
Q ss_pred CceeeeccCCeeEEEEEeecC
Q 041382 96 NSEIVDVFQGVTMKWKFNSDI 116 (600)
Q Consensus 96 ~~~~~d~~~g~~~~w~~~~~~ 116 (600)
|+++.|+|+|+++||.+++.+
T Consensus 78 ~e~V~D~F~Gv~v~W~~~~~e 98 (98)
T PF14363_consen 78 GEEVVDVFEGVKVWWSSVCTE 98 (98)
T ss_pred CCEEEEEECCEEEEEEEEccC
Confidence 999999999999999998763
No 41
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=4.2e-20 Score=200.42 Aligned_cols=256 Identities=17% Similarity=0.167 Sum_probs=173.8
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHcC----CcEEEEecCccCCh------hHHHHHHhhC--CCcceeeecchhhhhhh
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYMN----YDIYNLNLSVVTSD------SSLEYLLLHV--PNRSILVVEDIDCSIKL 285 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l~----~~~~~l~~~~~~~~------~~l~~~~~~~--~~~sIL~iDeiD~l~~~ 285 (600)
-+.++||+||+|||||.|++++++++. +++..++|+.+... ..++.+|..+ .+||||++||+|++++
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~- 508 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLAS- 508 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhc-
Confidence 345899999999999999999999984 45667899888643 2344555554 5899999999999985
Q ss_pred hccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHH
Q 041382 286 QNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLA 365 (600)
Q Consensus 286 ~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il 365 (600)
.++...+.++.....+..+||.+-......+..+.+|+|.+....|+|-|.+|++|+.++.+|.|...+|.+|+
T Consensus 509 ------~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL 582 (952)
T KOG0735|consen 509 ------ASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEIL 582 (952)
T ss_pred ------cCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHH
Confidence 11111233445556677788766544444445578999999999999999999999999999999999999999
Q ss_pred HHhcCcCC-CccHHHHHHHhh-hcCCCHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCCCC
Q 041382 366 ANYLDIND-HDLYCHIEKLME-KVKVSPAEVAGELMKAKGSKTSLEDFITYLESKESQEEKSSTAPPLASNVDGNRPEPQ 443 (600)
Q Consensus 366 ~~~l~~~~-~~~~~~i~~l~~-~~~~t~a~i~~~l~~~~~~~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (600)
+.++.... ......++-+.. ..+|.+-|+.-.. +. .+..+. ..+..+... -. .. ..++..
T Consensus 583 ~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifV------eR---ai~~a~-leris~~~k-ll----tk---e~f~ks 644 (952)
T KOG0735|consen 583 TTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFV------ER---AIHEAF-LERISNGPK-LL----TK---ELFEKS 644 (952)
T ss_pred HHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHH------HH---HHHHHH-HHHhccCcc-cc----hH---HHHHHH
Confidence 98886532 222333433322 2356666655432 22 222222 111111100 00 11 111112
Q ss_pred CC-CCCCCCCCCCCCCCCccccccccccCCCcc-hhhHHHHHHHHHHhhhhHHHhcCccchh
Q 041382 444 EN-GNNISKSGVQDQSSHTETEAADMGNVGGYS-VKAEFANIIKAIFSKHGDIAANSCLQSK 503 (600)
Q Consensus 444 ~~-~~~~S~~~~~~~~s~~~~~~~~~v~v~g~~-v~~~~~~~v~~~~~k~~di~~~~~~~~~ 503 (600)
.. ..+.+.++++..++. ...|.|+||++ ++.-+++++.|| .|||.||++|++-.+
T Consensus 645 L~~F~P~aLR~ik~~k~t----gi~w~digg~~~~k~~l~~~i~~P-~kyp~if~~~plr~~ 701 (952)
T KOG0735|consen 645 LKDFVPLALRGIKLVKST----GIRWEDIGGLFEAKKVLEEVIEWP-SKYPQIFANCPLRLR 701 (952)
T ss_pred HHhcChHHhhhccccccC----CCCceecccHHHHHHHHHHHHhcc-ccchHHHhhCCcccc
Confidence 22 234455666666544 37899999999 999999999999 999999999998764
No 42
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=6.3e-20 Score=200.87 Aligned_cols=294 Identities=15% Similarity=0.195 Sum_probs=185.5
Q ss_pred CCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC------ChhHHHHHHhhC--CCcceeeecchhhhhhhhcc
Q 041382 217 VWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT------SDSSLEYLLLHV--PNRSILVVEDIDCSIKLQNR 288 (600)
Q Consensus 217 ~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~------~~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r 288 (600)
.....+||+|+||||||++++++|.++|.+++.++|.++. ++..+...|..+ .+|+|||+-++|.+.. ++
T Consensus 429 ~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~i--d~ 506 (953)
T KOG0736|consen 429 TLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGI--DQ 506 (953)
T ss_pred ccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeee--cC
Confidence 3344799999999999999999999999999999999886 346677777776 4799999999998853 22
Q ss_pred ccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHh
Q 041382 289 ESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANY 368 (600)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~ 368 (600)
++ +..-.....+..++. +|.... ....+|+|+||+..+.+++.+.+ .|-+.|.+|.|++++|.+|++.|
T Consensus 507 dg-------ged~rl~~~i~~~ls-~e~~~~-~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y 575 (953)
T KOG0736|consen 507 DG-------GEDARLLKVIRHLLS-NEDFKF-SCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWY 575 (953)
T ss_pred CC-------chhHHHHHHHHHHHh-cccccC-CCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHH
Confidence 21 111222233333333 233322 22469999999999999999999 88899999999999999999999
Q ss_pred cCcCCCccHHHHHHHhhh-cCCCHHHHHHHHHhcCCHHHHHHHHHHHH-HhhhccccccCCCCCCCCCCCCCCCCCCCC-
Q 041382 369 LDINDHDLYCHIEKLMEK-VKVSPAEVAGELMKAKGSKTSLEDFITYL-ESKESQEEKSSTAPPLASNVDGNRPEPQEN- 445 (600)
Q Consensus 369 l~~~~~~~~~~i~~l~~~-~~~t~a~i~~~l~~~~~~~~al~~l~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 445 (600)
+.............++.. .++|.+++....... +.++...+.... .....+........ .......+++..+..
T Consensus 576 ~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~--s~~~~~~i~~~~l~g~~~~~~~~~~~~-~~~~l~~edf~kals~ 652 (953)
T KOG0736|consen 576 LNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHS--SLAAKTRIKNKGLAGGLQEEDEGELCA-AGFLLTEEDFDKALSR 652 (953)
T ss_pred HhccccchHHHHHHHHHhcCCCCHHHHHHHhcCc--hHHHHHHHHhhcccccchhcccccccc-ccceecHHHHHHHHHH
Confidence 986554444444455443 378999988765322 222323332222 11111111111111 111111111111111
Q ss_pred -CCCCCCCCCCCCCCCccccccccccCCCcc-hhhHHHHHHHHHHhhhhHHHhcCccchhhHHHHHH---------HHHH
Q 041382 446 -GNNISKSGVQDQSSHTETEAADMGNVGGYS-VKAEFANIIKAIFSKHGDIAANSCLQSKQCRSSLL---------EIVC 514 (600)
Q Consensus 446 -~~~~S~~~~~~~~s~~~~~~~~~v~v~g~~-v~~~~~~~v~~~~~k~~di~~~~~~~~~~~r~~~~---------~~l~ 514 (600)
+...+.....++.+ ++.|.||||++ ||.+++|+++.| .|||+++.. ....|+-++ ..|+
T Consensus 653 ~~~~fs~aiGAPKIP-----nV~WdDVGGLeevK~eIldTIqlP-L~hpeLfss----glrkRSGILLYGPPGTGKTLlA 722 (953)
T KOG0736|consen 653 LQKEFSDAIGAPKIP-----NVSWDDVGGLEEVKTEILDTIQLP-LKHPELFSS----GLRKRSGILLYGPPGTGKTLLA 722 (953)
T ss_pred HHHhhhhhcCCCCCC-----ccchhcccCHHHHHHHHHHHhcCc-ccChhhhhc----cccccceeEEECCCCCchHHHH
Confidence 11222333333322 47999999999 999999999999 999999976 444455443 2255
Q ss_pred HHHHHHhccccccccHHHHHHH
Q 041382 515 RIIQKLQKAKLKDLKETELKSM 536 (600)
Q Consensus 515 ~vi~~l~~~p~~~ls~~el~~~ 536 (600)
.-|+|=|...--...--||-+|
T Consensus 723 KAVATEcsL~FlSVKGPELLNM 744 (953)
T KOG0736|consen 723 KAVATECSLNFLSVKGPELLNM 744 (953)
T ss_pred HHHHhhceeeEEeecCHHHHHH
Confidence 5555555554333333444443
No 43
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=7.4e-20 Score=187.85 Aligned_cols=213 Identities=18% Similarity=0.231 Sum_probs=159.4
Q ss_pred ccchHHHHHHhHHHHHHHHHHHHhcCceeEEeecCCcccccc------------cccCCCCCCccccccChhHHHHHHHH
Q 041382 133 KMHTELVKKKYLVHVLEMAKMFKDRNRIVRFHTIRHDRWSSS------------GVNLDHPMTFGTLVMDGDLKETVLND 200 (600)
Q Consensus 133 ~~~~~~v~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~w~~~------------~v~~~~p~~f~~l~g~~~~k~~i~~~ 200 (600)
.+.-..|...|+..++.....++...+... .|... ........+|+.|+..+.++++|.+.
T Consensus 298 tkeg~~V~w~yi~r~LGqPSLiREsSrg~~-------pw~gsls~~k~~i~~~~~~s~~gk~pl~~ViL~psLe~Rie~l 370 (630)
T KOG0742|consen 298 TKEGTLVTWRYIERRLGQPSLIRESSRGRF-------PWIGSLSALKHPIQGSRSASSRGKDPLEGVILHPSLEKRIEDL 370 (630)
T ss_pred ccccchhHHHHHHHHcCCchhhhhhccccC-------CCcccHHHHhchhhhhHhhhhcCCCCcCCeecCHHHHHHHHHH
Confidence 444557888888888777766776665442 23210 11122334699999999999999776
Q ss_pred HHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC-----ChhHHHHHHhhCC---Ccc
Q 041382 201 LDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT-----SDSSLEYLLLHVP---NRS 272 (600)
Q Consensus 201 l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~-----~~~~l~~~~~~~~---~~s 272 (600)
...-.+. +....+-|++|||||||||||++|+-+|.+.|+++-.+..+++. ..+.++.+|..+. +.-
T Consensus 371 A~aTaNT-----K~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaVTkiH~lFDWakkS~rGL 445 (630)
T KOG0742|consen 371 AIATANT-----KKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAVTKIHKLFDWAKKSRRGL 445 (630)
T ss_pred HHHhccc-----ccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHHHHHHHHHHHHhhcccce
Confidence 5443332 22334557999999999999999999999999999888877775 4578888888774 467
Q ss_pred eeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEE
Q 041382 273 ILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHIN 352 (600)
Q Consensus 273 IL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~ 352 (600)
+|||||.|+++. .|... ..+...+..|+.||-..-.- ...+++|.+||+|+.||.|+-. |||..|+
T Consensus 446 llFIDEADAFLc--eRnkt------ymSEaqRsaLNAlLfRTGdq----SrdivLvlAtNrpgdlDsAV~D--Ride~ve 511 (630)
T KOG0742|consen 446 LLFIDEADAFLC--ERNKT------YMSEAQRSALNALLFRTGDQ----SRDIVLVLATNRPGDLDSAVND--RIDEVVE 511 (630)
T ss_pred EEEehhhHHHHH--Hhchh------hhcHHHHHHHHHHHHHhccc----ccceEEEeccCCccchhHHHHh--hhhheee
Confidence 999999999975 55432 22345667777777554322 2458999999999999999999 9999999
Q ss_pred eCCCCHHHHHHHHHHhcCc
Q 041382 353 LSYCTFSTFKQLAANYLDI 371 (600)
Q Consensus 353 ~~~p~~e~r~~il~~~l~~ 371 (600)
||.|..++|..|+..||..
T Consensus 512 FpLPGeEERfkll~lYlnk 530 (630)
T KOG0742|consen 512 FPLPGEEERFKLLNLYLNK 530 (630)
T ss_pred cCCCChHHHHHHHHHHHHH
Confidence 9999999999999999864
No 44
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.80 E-value=1.6e-19 Score=163.54 Aligned_cols=123 Identities=33% Similarity=0.509 Sum_probs=100.7
Q ss_pred eeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC------ChhHHHHHHhhC--CC-cceeeecchhhhhhhhccccCC
Q 041382 222 YLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT------SDSSLEYLLLHV--PN-RSILVVEDIDCSIKLQNRESQK 292 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~------~~~~l~~~~~~~--~~-~sIL~iDeiD~l~~~~~r~~~~ 292 (600)
+|||||||||||++|+++|++++.+++.+++..+. ....+...|..+ .. |+||+|||+|.+.+ +..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~--~~~--- 75 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFP--KSQ--- 75 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSH--HCS---
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccc--ccc---
Confidence 68999999999999999999999999999998876 235667777665 34 89999999999976 220
Q ss_pred CCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCC
Q 041382 293 GDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSY 355 (600)
Q Consensus 293 ~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~ 355 (600)
..........+..|++.++..... +.++++|+|||+++.++|+++| |||+..|++|.
T Consensus 76 ----~~~~~~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 76 ----PSSSSFEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp ----TSSSHHHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ----cccccccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 122345667888999999988654 2459999999999999999998 89999999974
No 45
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.79 E-value=3e-19 Score=208.07 Aligned_cols=205 Identities=18% Similarity=0.235 Sum_probs=138.1
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc----------CCcEEE
Q 041382 180 HPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM----------NYDIYN 249 (600)
Q Consensus 180 ~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l----------~~~~~~ 249 (600)
.|-.+++++|.++...++++.+.. ..+.+++|+||||||||++|+++|..+ +.+++.
T Consensus 182 r~~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~ 248 (852)
T TIGR03345 182 REGKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS 248 (852)
T ss_pred cCCCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence 577899999999987777766532 223489999999999999999999976 356888
Q ss_pred EecCccCC--------hhHHHHHHhhC---CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCcc
Q 041382 250 LNLSVVTS--------DSSLEYLLLHV---PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLL 318 (600)
Q Consensus 250 l~~~~~~~--------~~~l~~~~~~~---~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~ 318 (600)
++++.+.. ...++.++... ..++||||||||.+.+ .++.. + ... .-+-|+..+.
T Consensus 249 l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~--~g~~~-~------~~d---~~n~Lkp~l~--- 313 (852)
T TIGR03345 249 LDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIG--AGGQA-G------QGD---AANLLKPALA--- 313 (852)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhcc--CCCcc-c------ccc---HHHHhhHHhh---
Confidence 88876542 14667777655 3589999999999975 11110 0 000 1122333322
Q ss_pred ccCCCeeEEEEecCCcC-----cCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCC--CccHHHHHHHhhhcCCCH
Q 041382 319 CCCGDEKITVFTTNYKD-----RIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIND--HDLYCHIEKLMEKVKVSP 391 (600)
Q Consensus 319 ~~~~~~~iiI~TTN~~~-----~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~--~~~~~~i~~l~~~~~~t~ 391 (600)
.+.+.+|+||+..+ .+||||.| ||. .|.++.|+.+++..|++.+..... |...-.-+.+...+.+|.
T Consensus 314 ---~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ 387 (852)
T TIGR03345 314 ---RGELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSH 387 (852)
T ss_pred ---CCCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcc
Confidence 24588999888643 37999999 994 899999999999999876654432 221111111211223455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhccc
Q 041382 392 AEVAGELMKAKGSKTSLEDFITYLESKESQE 422 (600)
Q Consensus 392 a~i~~~l~~~~~~~~al~~l~~~l~~~~~~~ 422 (600)
.++.+..+ |+.|++-+.++....+...
T Consensus 388 ryi~~r~L----PDKAIdlldea~a~~~~~~ 414 (852)
T TIGR03345 388 RYIPGRQL----PDKAVSLLDTACARVALSQ 414 (852)
T ss_pred cccccccC----ccHHHHHHHHHHHHHHHhc
Confidence 55555444 8999999999887766543
No 46
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.79 E-value=8.8e-19 Score=202.66 Aligned_cols=251 Identities=16% Similarity=0.210 Sum_probs=173.1
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc----------CCcEEE
Q 041382 180 HPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM----------NYDIYN 249 (600)
Q Consensus 180 ~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l----------~~~~~~ 249 (600)
.|-.+|+++|.++...++++.+... .+.++||+||||||||++|+++|..+ +.+++.
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~~~-------------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~ 243 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLCRR-------------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS 243 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHhcC-------------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence 5678999999999988877665322 24589999999999999999999987 788999
Q ss_pred EecCccCCh--------hHHHHHHhhCC--CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccc
Q 041382 250 LNLSVVTSD--------SSLEYLLLHVP--NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLC 319 (600)
Q Consensus 250 l~~~~~~~~--------~~l~~~~~~~~--~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~ 319 (600)
++++.+... ..++.++..+. .++||||||||.+++. +... + + ....-+-|...+.
T Consensus 244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~--g~~~------~--~-~~~~~~~L~~~l~---- 308 (731)
T TIGR02639 244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGA--GATS------G--G-SMDASNLLKPALS---- 308 (731)
T ss_pred ecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhcc--CCCC------C--c-cHHHHHHHHHHHh----
Confidence 998776532 46778887653 5899999999999751 1100 0 0 0111122333332
Q ss_pred cCCCeeEEEEecCCcC-----cCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCC--Ccc--H-HHHHHHhhhcCC
Q 041382 320 CCGDEKITVFTTNYKD-----RIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIND--HDL--Y-CHIEKLMEKVKV 389 (600)
Q Consensus 320 ~~~~~~iiI~TTN~~~-----~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~--~~~--~-~~i~~l~~~~~~ 389 (600)
.+++.+|++||..+ .+|+||.| ||. .|+++.|+.+++.+|++.....+. |.. . +.+..+ +.+
T Consensus 309 --~g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~---~~l 380 (731)
T TIGR02639 309 --SGKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAA---VEL 380 (731)
T ss_pred --CCCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHH---HHh
Confidence 14588899888643 47999999 996 799999999999999997665421 211 1 111111 223
Q ss_pred CHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 041382 390 SPAEVAGELMKAKGSKTSLEDFITYLESKESQEEKSSTAPPLASNVDGNRPEPQENGNNISKSGVQDQSSHTETEAADMG 469 (600)
Q Consensus 390 t~a~i~~~l~~~~~~~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~~~s~~~~~~~~~v 469 (600)
+..++.+..+ |+.|++-+.++....+..... . .
T Consensus 381 s~ryi~~r~~----P~kai~lld~a~a~~~~~~~~---------------------------~-------~--------- 413 (731)
T TIGR02639 381 SARYINDRFL----PDKAIDVIDEAGASFRLRPKA---------------------------K-------K--------- 413 (731)
T ss_pred hhcccccccC----CHHHHHHHHHhhhhhhcCccc---------------------------c-------c---------
Confidence 4444443333 899998888877654332100 0 0
Q ss_pred cCCCcchhhHHHHHHHHHHhhhhHHHhcCccchhhHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHhCCc
Q 041382 470 NVGGYSVKAEFANIIKAIFSKHGDIAANSCLQSKQCRSSLLEIVCRIIQKLQKAKLKDLKETELKSMLSELQDLESMRL 548 (600)
Q Consensus 470 ~v~g~~v~~~~~~~v~~~~~k~~di~~~~~~~~~~~r~~~~~~l~~vi~~l~~~p~~~ls~~el~~~~~~~~~L~~~~~ 548 (600)
......+.|..+|+.|+++|+..++.+|..++.++...|++.=+
T Consensus 414 -----------------------------------~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~ 457 (731)
T TIGR02639 414 -----------------------------------KANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIF 457 (731)
T ss_pred -----------------------------------ccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhccee
Confidence 00122344899999999999999999999999999999887543
No 47
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.78 E-value=7.5e-18 Score=164.19 Aligned_cols=192 Identities=17% Similarity=0.209 Sum_probs=125.8
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT 256 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~ 256 (600)
..-.|.+|++++|+++++..+.-.+.....+ +. .-.++|||||||+||||||..||++++.++..++...+.
T Consensus 16 ~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r-------~~-~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~ 87 (233)
T PF05496_consen 16 ERLRPKSLDEFIGQEHLKGNLKILIRAAKKR-------GE-ALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE 87 (233)
T ss_dssp HHTS-SSCCCS-S-HHHHHHHHHHHHHHHCT-------TS----EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--
T ss_pred HhcCCCCHHHccCcHHHHhhhHHHHHHHHhc-------CC-CcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh
Confidence 3457899999999999998876555433322 11 123799999999999999999999999999999987777
Q ss_pred ChhHHHHHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCcc-----ccCC---------
Q 041382 257 SDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLL-----CCCG--------- 322 (600)
Q Consensus 257 ~~~~l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~-----~~~~--------- 322 (600)
...++..++.....+.||||||||.+-. ..-..|+..|+... ..+.
T Consensus 88 k~~dl~~il~~l~~~~ILFIDEIHRlnk--------------------~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l 147 (233)
T PF05496_consen 88 KAGDLAAILTNLKEGDILFIDEIHRLNK--------------------AQQEILLPAMEDGKIDIIIGKGPNARSIRINL 147 (233)
T ss_dssp SCHHHHHHHHT--TT-EEEECTCCC--H--------------------HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE-
T ss_pred hHHHHHHHHHhcCCCcEEEEechhhccH--------------------HHHHHHHHHhccCeEEEEeccccccceeeccC
Confidence 7788888888888899999999998843 22334666665332 1111
Q ss_pred CeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHH-HHHhhhcCCCHHHHHHHH
Q 041382 323 DEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHI-EKLMEKVKVSPAEVAGEL 398 (600)
Q Consensus 323 ~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i-~~l~~~~~~t~a~i~~~l 398 (600)
...-+|++|++...|.+.|+. ||....++.+.+.++..+|+++..........++. ..++....-||.-....|
T Consensus 148 ~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiAnrll 222 (233)
T PF05496_consen 148 PPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRIANRLL 222 (233)
T ss_dssp ---EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHHHHHH
T ss_pred CCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHHHHHH
Confidence 236789999999999999999 99999999999999999999976665554544333 333333345555433333
No 48
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=4.9e-19 Score=199.05 Aligned_cols=294 Identities=14% Similarity=0.190 Sum_probs=193.3
Q ss_pred CCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc----------CCcEEEEe
Q 041382 182 MTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM----------NYDIYNLN 251 (600)
Q Consensus 182 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l----------~~~~~~l~ 251 (600)
-.+|.++|.++.+.++++.|.+..+ .+.+|.|+||+|||.++..+|... +..++.+|
T Consensus 167 gklDPvIGRd~EI~r~iqIL~RR~K-------------NNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD 233 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILSRRTK-------------NNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD 233 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHhccCC-------------CCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec
Confidence 3689999999999999999876554 488999999999999999999965 67899999
Q ss_pred cCccCChh--------HHHHHHhhCC--CcceeeecchhhhhhhhccccCCCCC-CCCCCCChHHHHHHHHHhhcCcccc
Q 041382 252 LSVVTSDS--------SLEYLLLHVP--NRSILVVEDIDCSIKLQNRESQKGDE-PADSYRGPQVTLAGLLNAIDGLLCC 320 (600)
Q Consensus 252 ~~~~~~~~--------~l~~~~~~~~--~~sIL~iDeiD~l~~~~~r~~~~~~~-~~~~~~~~~~~ls~lL~~ldg~~~~ 320 (600)
++.+.... .++.++.... .+.||||||||.+.+ ++..++ ..+..+-.+..|+
T Consensus 234 ~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVG-----AG~~~G~a~DAaNiLKPaLA------------ 296 (786)
T COG0542 234 LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVG-----AGATEGGAMDAANLLKPALA------------ 296 (786)
T ss_pred HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcC-----CCcccccccchhhhhHHHHh------------
Confidence 99887543 4444444442 389999999999987 221111 1112222222221
Q ss_pred CCCeeEEEEecC------CcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCC--CccHHHHHHHhhhcCCCHH
Q 041382 321 CGDEKITVFTTN------YKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIND--HDLYCHIEKLMEKVKVSPA 392 (600)
Q Consensus 321 ~~~~~iiI~TTN------~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~--~~~~~~i~~l~~~~~~t~a 392 (600)
. ++.-+|++|. +.++ |+||-| || ..|.+..|+.++-..|++..-..+. |.....-..+...+.+|..
T Consensus 297 R-GeL~~IGATT~~EYRk~iEK-D~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~R 371 (786)
T COG0542 297 R-GELRCIGATTLDEYRKYIEK-DAALER--RF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDR 371 (786)
T ss_pred c-CCeEEEEeccHHHHHHHhhh-chHHHh--cC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHh
Confidence 1 3466666653 4455 999999 99 6999999999999999997665442 3322233334444557777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhccccccCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccC
Q 041382 393 EVAGELMKAKGSKTSLEDFITYLESKESQEEKSSTAPPL-ASNVDGNRPEPQENGNNISKSGVQDQSSHTETEAADMGNV 471 (600)
Q Consensus 393 ~i~~~l~~~~~~~~al~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~S~~~~~~~~s~~~~~~~~~v~v 471 (600)
+|.+..+ |++|++-+.++..+.+.+.. ....-.. .......+.+ + ....... .
T Consensus 372 YI~dR~L----PDKAIDLiDeA~a~~~l~~~-~p~~l~~~~~~~~~l~~e---~--------~~~~~e~-----~----- 425 (786)
T COG0542 372 YIPDRFL----PDKAIDLLDEAGARVRLEID-KPEELDELERELAQLEIE---K--------EALEREQ-----D----- 425 (786)
T ss_pred hcccCCC----CchHHHHHHHHHHHHHhccc-CCcchhHHHHHHHHHHHH---H--------HHHhhhh-----h-----
Confidence 7776666 99999999999988877654 2211000 0000000000 0 0000000 0
Q ss_pred CCcchhhHHHHHHHHHH-hhhhHHHhcCccchhhHHHHHHHH-HHHHHHHHhccccccccHHHHHHHHHHHHHHHhC
Q 041382 472 GGYSVKAEFANIIKAIF-SKHGDIAANSCLQSKQCRSSLLEI-VCRIIQKLQKAKLKDLKETELKSMLSELQDLESM 546 (600)
Q Consensus 472 ~g~~v~~~~~~~v~~~~-~k~~di~~~~~~~~~~~r~~~~~~-l~~vi~~l~~~p~~~ls~~el~~~~~~~~~L~~~ 546 (600)
+.....++.+..+. .+.|+....... . |.+. |+++|+.++|+|+.+++++|..++.++..+|++.
T Consensus 426 ---~~~k~~~~~~~~~~~~~~~~~~~~~~~-~------v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~r 492 (786)
T COG0542 426 ---EKEKKLIDEIIKLKEGRIPELEKELEA-E------VDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKR 492 (786)
T ss_pred ---HHHHHHHHHHHHHhhhhhhhHHHHHhh-c------cCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcc
Confidence 44445555555554 344444444433 1 4444 9999999999999999999999999999988764
No 49
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.76 E-value=7e-18 Score=197.28 Aligned_cols=204 Identities=14% Similarity=0.204 Sum_probs=136.3
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc----------CCcEEE
Q 041382 180 HPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM----------NYDIYN 249 (600)
Q Consensus 180 ~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l----------~~~~~~ 249 (600)
.|-.+++++|.++...++++.+.+. .+.+++|+||||||||++|+++|..+ +.+++.
T Consensus 173 r~~~l~~vigr~~ei~~~i~iL~r~-------------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~ 239 (857)
T PRK10865 173 EQGKLDPVIGRDEEIRRTIQVLQRR-------------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 239 (857)
T ss_pred hcCCCCcCCCCHHHHHHHHHHHhcC-------------CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEE
Confidence 4678999999999888887776432 23589999999999999999999987 789999
Q ss_pred EecCccCCh--------hHHHHHHhhC---CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCcc
Q 041382 250 LNLSVVTSD--------SSLEYLLLHV---PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLL 318 (600)
Q Consensus 250 l~~~~~~~~--------~~l~~~~~~~---~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~ 318 (600)
++++.+... ..++.+|... ..++||||||+|.+.+ .+.+. ++ . ..+.+|. ...
T Consensus 240 l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~--~~~~~------~~-~----d~~~~lk---p~l 303 (857)
T PRK10865 240 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVG--AGKAD------GA-M----DAGNMLK---PAL 303 (857)
T ss_pred EehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhcc--CCCCc------cc-h----hHHHHhc---chh
Confidence 988876422 3466676543 4689999999999975 11111 00 1 1122221 111
Q ss_pred ccCCCeeEEEEecCCcC-----cCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCC--CccHHHHHHHhhhcCCCH
Q 041382 319 CCCGDEKITVFTTNYKD-----RIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIND--HDLYCHIEKLMEKVKVSP 391 (600)
Q Consensus 319 ~~~~~~~iiI~TTN~~~-----~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~--~~~~~~i~~l~~~~~~t~ 391 (600)
. .+.+.+|+||+..+ .+|+||.| ||+ .|.++.|+.+++..|++.+..... |.....-+.+...+.++.
T Consensus 304 ~--~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ 378 (857)
T PRK10865 304 A--RGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSH 378 (857)
T ss_pred h--cCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhh
Confidence 2 24689999998776 37999999 997 699999999999999987765432 211111111111122344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhcc
Q 041382 392 AEVAGELMKAKGSKTSLEDFITYLESKESQ 421 (600)
Q Consensus 392 a~i~~~l~~~~~~~~al~~l~~~l~~~~~~ 421 (600)
.++.+.++ |+.|++-+..+....+..
T Consensus 379 ry~~~~~~----pdkAi~LiD~aaa~~rl~ 404 (857)
T PRK10865 379 RYIADRQL----PDKAIDLIDEAASSIRMQ 404 (857)
T ss_pred ccccCCCC----ChHHHHHHHHHhcccccc
Confidence 44433333 777877777776655443
No 50
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.76 E-value=1e-18 Score=204.37 Aligned_cols=317 Identities=13% Similarity=0.160 Sum_probs=193.8
Q ss_pred CCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc----------CCcEEEEe
Q 041382 182 MTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM----------NYDIYNLN 251 (600)
Q Consensus 182 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l----------~~~~~~l~ 251 (600)
-.+++++|.++..+++++.+... .+.+++|+||||||||++|+++|..+ +.+++.++
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~r~-------------~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILGRR-------------TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHccc-------------ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 35889999999999998876432 34589999999999999999999986 47899999
Q ss_pred cCccCC--------hhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHH-HhhcCcccc
Q 041382 252 LSVVTS--------DSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLL-NAIDGLLCC 320 (600)
Q Consensus 252 ~~~~~~--------~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL-~~ldg~~~~ 320 (600)
++.+.. +..++.++..+ ..++||||||||.+++. +. .. +. ...+.+| ..+.
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~--g~---~~---g~-----~~~a~lLkp~l~----- 304 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGA--GA---AE---GA-----IDAANILKPALA----- 304 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcC--CC---CC---Cc-----ccHHHHhHHHHh-----
Confidence 876542 23667777654 35899999999999751 11 00 00 1122233 2222
Q ss_pred CCCeeEEEEecCCcC-----cCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcC----CCccHHHHHHHhhhcCCCH
Q 041382 321 CGDEKITVFTTNYKD-----RIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIN----DHDLYCHIEKLMEKVKVSP 391 (600)
Q Consensus 321 ~~~~~iiI~TTN~~~-----~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~----~~~~~~~i~~l~~~~~~t~ 391 (600)
.+++.+|++|+..+ ..||+|.+ ||. .|.++.|+.++...|++...... .....++.-.. -..+|.
T Consensus 305 -rg~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~--i~~ls~ 378 (821)
T CHL00095 305 -RGELQCIGATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEA--AAKLSD 378 (821)
T ss_pred -CCCcEEEEeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHhh
Confidence 24588888888654 46999999 995 68999999999988887544321 11111111111 112333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccC
Q 041382 392 AEVAGELMKAKGSKTSLEDFITYLESKESQEEKSSTAPPLASNVDGNRPEPQENGNNISKSGVQDQSSHTETEAADMGNV 471 (600)
Q Consensus 392 a~i~~~l~~~~~~~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~~~s~~~~~~~~~v~v 471 (600)
.++.+..+ |+.|++-+.++....+.......... ........... .++.....-
T Consensus 379 ~yi~~r~l----Pdkaidlld~a~a~~~~~~~~~~~~~--~~~~~~~~~~~--------------------~~~~~~~~~ 432 (821)
T CHL00095 379 QYIADRFL----PDKAIDLLDEAGSRVRLINSRLPPAA--RELDKELREIL--------------------KDKDEAIRE 432 (821)
T ss_pred ccCccccC----chHHHHHHHHHHHHHHhhccCCchhH--HHHHHHHHHHH--------------------HHHHHHHhC
Confidence 34433332 89999999998887665432110000 00000000000 000001111
Q ss_pred CCcchhhHHHHHHHHHHhhhhHHHhcCccch--hhHHHHHHHH-HHHHHHHHhccccccccHHHHHHHHHHHHHHHhCCc
Q 041382 472 GGYSVKAEFANIIKAIFSKHGDIAANSCLQS--KQCRSSLLEI-VCRIIQKLQKAKLKDLKETELKSMLSELQDLESMRL 548 (600)
Q Consensus 472 ~g~~v~~~~~~~v~~~~~k~~di~~~~~~~~--~~~r~~~~~~-l~~vi~~l~~~p~~~ls~~el~~~~~~~~~L~~~~~ 548 (600)
..|.-...+++....+..+..++...|.... +.....+... |+.+|+.++|+|+..|.++|..++.++...|++.
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~-- 510 (821)
T CHL00095 433 QDFETAKQLRDREMEVRAQIAAIIQSKKTEEEKRLEVPVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKR-- 510 (821)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCc--
Confidence 2333334444444444455555555554321 1112335445 9999999999999999999999999999999875
Q ss_pred chhhchhHHHHHHHHH
Q 041382 549 EVGWLRKRLDEIVEAM 564 (600)
Q Consensus 549 ~~~wl~~~l~e~~~~~ 564 (600)
|-|=+.-.+.|+.+.
T Consensus 511 -v~GQ~~ai~~l~~~i 525 (821)
T CHL00095 511 -IIGQDEAVVAVSKAI 525 (821)
T ss_pred -CcChHHHHHHHHHHH
Confidence 556666666665543
No 51
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=5.9e-17 Score=176.60 Aligned_cols=200 Identities=22% Similarity=0.301 Sum_probs=139.6
Q ss_pred cccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCChhHHHH-
Q 041382 185 GTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEY- 263 (600)
Q Consensus 185 ~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~~~~l~~- 263 (600)
++..|.+++|++|++++.--. -.|..-+.-++|+||||+|||+++++||..+|+.|+.++.+.+.+..+++.
T Consensus 411 eDHYgm~dVKeRILEfiAV~k-------Lrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGK-------LRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHh-------hcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 457899999999999885322 223344456789999999999999999999999999999999987766652
Q ss_pred --------------HHhhC-CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHH------HhhcCc----c
Q 041382 264 --------------LLLHV-PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLL------NAIDGL----L 318 (600)
Q Consensus 264 --------------~~~~~-~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL------~~ldg~----~ 318 (600)
.+... ....+++|||||.++. + ..+.+...|-++| |++|.. .
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~-----g--------~qGDPasALLElLDPEQNanFlDHYLdVp~ 550 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGS-----G--------HQGDPASALLELLDPEQNANFLDHYLDVPV 550 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCC-----C--------CCCChHHHHHHhcChhhccchhhhcccccc
Confidence 22222 3566999999999953 1 1122222222222 122222 1
Q ss_pred ccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhhhcCCCHHHH----
Q 041382 319 CCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLMEKVKVSPAEV---- 394 (600)
Q Consensus 319 ~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~~~~~t~a~i---- 394 (600)
.- ..+++|||+|..+.|||+|+. || ..|+++-+..++...|+++||-. ......++++..|
T Consensus 551 DL--SkVLFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yLip----------~a~~~~gl~~e~v~is~ 615 (906)
T KOG2004|consen 551 DL--SKVLFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYLIP----------QALKDCGLKPEQVKISD 615 (906)
T ss_pred ch--hheEEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhhhh----------HHHHHcCCCHHhcCccH
Confidence 12 249999999999999999999 99 58999999999999999999953 2222233333332
Q ss_pred --HHHHHhcCCHHHHHHHHHHHHHhhh
Q 041382 395 --AGELMKAKGSKTSLEDFITYLESKE 419 (600)
Q Consensus 395 --~~~l~~~~~~~~al~~l~~~l~~~~ 419 (600)
...|+.+++.++.++.+.+-++...
T Consensus 616 ~al~~lI~~YcrEaGVRnLqk~iekI~ 642 (906)
T KOG2004|consen 616 DALLALIERYCREAGVRNLQKQIEKIC 642 (906)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2234566777888888877665543
No 52
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=7.1e-18 Score=169.26 Aligned_cols=177 Identities=23% Similarity=0.308 Sum_probs=133.1
Q ss_pred ccccccChhHHHHHHHHHHHHHhCHHHH-HHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcC---------CcEEEEecC
Q 041382 184 FGTLVMDGDLKETVLNDLDCFRRGKEYY-RKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMN---------YDIYNLNLS 253 (600)
Q Consensus 184 f~~l~g~~~~k~~i~~~l~~~l~~~~~y-~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~---------~~~~~l~~~ 253 (600)
|+.++.+..+|+++..+...-+.-.+.- ..--+.|.|-+|||||||||||+|++|+|+.+. ..++.+++.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 7788999999999998776554421111 111267889999999999999999999999873 356778877
Q ss_pred ccCC------hhHHHHHHhhCC-------CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCcccc
Q 041382 254 VVTS------DSSLEYLLLHVP-------NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCC 320 (600)
Q Consensus 254 ~~~~------~~~l~~~~~~~~-------~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~ 320 (600)
.+.+ ...+..+|.+.. .-..++|||++++.. .|.+..+. .+....-+.++.+|..||.+...
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~--aR~s~~S~---~EpsDaIRvVNalLTQlDrlK~~ 295 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAA--ARTSASSR---NEPSDAIRVVNALLTQLDRLKRY 295 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHH--HHHhhhcC---CCCchHHHHHHHHHHHHHHhccC
Confidence 7653 344555555542 234667999999976 44222111 12334557889999999999766
Q ss_pred CCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhc
Q 041382 321 CGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYL 369 (600)
Q Consensus 321 ~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l 369 (600)
.++++.+|+|-.+.||-|+.. |-|-..++++|+.+++.+|++..+
T Consensus 296 --~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~Ilksci 340 (423)
T KOG0744|consen 296 --PNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCI 340 (423)
T ss_pred --CCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHH
Confidence 459999999999999999999 999999999999999999998765
No 53
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.74 E-value=9.5e-17 Score=169.29 Aligned_cols=167 Identities=19% Similarity=0.221 Sum_probs=128.3
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT 256 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~ 256 (600)
....|.+|++++|.++.++.+...+...... + .+++++|||||||||||++|+++|++++.++...+...+.
T Consensus 17 ~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~-~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~ 88 (328)
T PRK00080 17 RSLRPKSLDEFIGQEKVKENLKIFIEAAKKR-------G-EALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE 88 (328)
T ss_pred hhcCcCCHHHhcCcHHHHHHHHHHHHHHHhc-------C-CCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc
Confidence 4457889999999999999988777543321 2 3346899999999999999999999999998888777666
Q ss_pred ChhHHHHHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCcc-----cc---------CC
Q 041382 257 SDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLL-----CC---------CG 322 (600)
Q Consensus 257 ~~~~l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~-----~~---------~~ 322 (600)
....+..++.....++||||||||.+.. .....|.+.|+... .. ..
T Consensus 89 ~~~~l~~~l~~l~~~~vl~IDEi~~l~~--------------------~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l 148 (328)
T PRK00080 89 KPGDLAAILTNLEEGDVLFIDEIHRLSP--------------------VVEEILYPAMEDFRLDIMIGKGPAARSIRLDL 148 (328)
T ss_pred ChHHHHHHHHhcccCCEEEEecHhhcch--------------------HHHHHHHHHHHhcceeeeeccCccccceeecC
Confidence 6677888888778899999999998742 01111333333211 00 01
Q ss_pred CeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCC
Q 041382 323 DEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIND 373 (600)
Q Consensus 323 ~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~ 373 (600)
..+.+|++||++..++++|.+ ||+..+.+++|+.+++.++++.......
T Consensus 149 ~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~ 197 (328)
T PRK00080 149 PPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILG 197 (328)
T ss_pred CCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 236789999999999999999 9999999999999999999998776543
No 54
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.73 E-value=7.1e-17 Score=164.83 Aligned_cols=171 Identities=11% Similarity=0.174 Sum_probs=123.1
Q ss_pred ccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCC---cceeeeCCCCCCHHHHHHHHHHHc-------CCcEEEEecC
Q 041382 184 FGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWK---RGYLLYGPPGTGKSSLIAAMANYM-------NYDIYNLNLS 253 (600)
Q Consensus 184 f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~---rgiLL~GppGtGKTsla~alA~~l-------~~~~~~l~~~ 253 (600)
+++++|.+++|+.|.+.+...... ......|...+ .++|||||||||||++|+++|+.+ ..+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 578999999999999887665443 33444565432 368999999999999999999975 2367777776
Q ss_pred ccCC------hhHHHHHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEE
Q 041382 254 VVTS------DSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKIT 327 (600)
Q Consensus 254 ~~~~------~~~l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ii 327 (600)
++.+ ...+..+|..+ .++||||||+|.+.. +. ........+..|+..|+... ..+++
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a-~~~VL~IDE~~~L~~----~~--------~~~~~~~~i~~Ll~~~e~~~----~~~~v 146 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKA-LGGVLFIDEAYSLAR----GG--------EKDFGKEAIDTLVKGMEDNR----NEFVL 146 (261)
T ss_pred HhhhhhccchHHHHHHHHHhc-cCCEEEEechhhhcc----CC--------ccchHHHHHHHHHHHHhccC----CCEEE
Confidence 6542 34556667655 468999999999842 10 11123446677888887642 33566
Q ss_pred EEecCCc-----CcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCC
Q 041382 328 VFTTNYK-----DRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDH 374 (600)
Q Consensus 328 I~TTN~~-----~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~ 374 (600)
|++++.. ..++|+|.+ ||+.+|+||.++.+++.+|++.++.....
T Consensus 147 ila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~ 196 (261)
T TIGR02881 147 ILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREY 196 (261)
T ss_pred EecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCC
Confidence 6655432 247899999 99999999999999999999998875443
No 55
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.73 E-value=1.1e-17 Score=196.34 Aligned_cols=205 Identities=14% Similarity=0.207 Sum_probs=139.7
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc----------CCcEE
Q 041382 179 DHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM----------NYDIY 248 (600)
Q Consensus 179 ~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l----------~~~~~ 248 (600)
-.|-.++.++|.++...++++.+.. ..+.+++|+||||||||++++++|..+ +.+++
T Consensus 167 ~~~~~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~ 233 (852)
T TIGR03346 167 AREGKLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLL 233 (852)
T ss_pred hhCCCCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEE
Confidence 3567899999999987777776632 224589999999999999999999986 67899
Q ss_pred EEecCccCCh--------hHHHHHHhhC---CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCc
Q 041382 249 NLNLSVVTSD--------SSLEYLLLHV---PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGL 317 (600)
Q Consensus 249 ~l~~~~~~~~--------~~l~~~~~~~---~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~ 317 (600)
.++++.+... ..+..++... ..++||||||||.+.+ .+.+. + .. ....+|. ..
T Consensus 234 ~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~--~g~~~---------~-~~-d~~~~Lk---~~ 297 (852)
T TIGR03346 234 ALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVG--AGKAE---------G-AM-DAGNMLK---PA 297 (852)
T ss_pred EeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhc--CCCCc---------c-hh-HHHHHhc---hh
Confidence 9987766421 2566666554 3589999999999975 11100 0 01 1122222 12
Q ss_pred cccCCCeeEEEEecCCcC-----cCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCC--CccHHHHHHHhhhcCCC
Q 041382 318 LCCCGDEKITVFTTNYKD-----RIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIND--HDLYCHIEKLMEKVKVS 390 (600)
Q Consensus 318 ~~~~~~~~iiI~TTN~~~-----~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~--~~~~~~i~~l~~~~~~t 390 (600)
.. .+.+.+|++|+..+ .+|+||.| ||. .|.++.|+.+++..|++.+..... |.....-..+...+.+|
T Consensus 298 l~--~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls 372 (852)
T TIGR03346 298 LA--RGELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLS 372 (852)
T ss_pred hh--cCceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhc
Confidence 11 24588889888664 47999999 995 689999999999999997755432 22211111222223456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhhcc
Q 041382 391 PAEVAGELMKAKGSKTSLEDFITYLESKESQ 421 (600)
Q Consensus 391 ~a~i~~~l~~~~~~~~al~~l~~~l~~~~~~ 421 (600)
..++.+..+ |++|++-+.++....+..
T Consensus 373 ~~yi~~r~l----PdkAidlld~a~a~~~~~ 399 (852)
T TIGR03346 373 HRYITDRFL----PDKAIDLIDEAAARIRME 399 (852)
T ss_pred cccccccCC----chHHHHHHHHHHHHHHhh
Confidence 666665444 899999999998876654
No 56
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=5.9e-17 Score=177.70 Aligned_cols=198 Identities=21% Similarity=0.213 Sum_probs=137.8
Q ss_pred ccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCChhHHHH--
Q 041382 186 TLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEY-- 263 (600)
Q Consensus 186 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~~~~l~~-- 263 (600)
+..|.+++|++|++++.-.... +.-.+.-++|+||||+|||||+++||+.+|+.|+.++++.+.+++.++.
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~-------~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLT-------KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHh-------ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 4689999999999988543322 2222235789999999999999999999999999999999998877762
Q ss_pred -------------HHhhC-CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCc---------cc-
Q 041382 264 -------------LLLHV-PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGL---------LC- 319 (600)
Q Consensus 264 -------------~~~~~-~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~---------~~- 319 (600)
.+.++ ....+++|||||.+.. .-|+ .+ -+.||..+|-- ..
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~s-s~rG------------DP---aSALLEVLDPEQN~~F~DhYLev 460 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGS-SFRG------------DP---ASALLEVLDPEQNNTFSDHYLEV 460 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCCeEEeechhhccC-CCCC------------Ch---HHHHHhhcCHhhcCchhhccccC
Confidence 12222 3567999999999853 1111 11 14455555421 00
Q ss_pred -cCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhhhcCCCHHH-----
Q 041382 320 -CCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLMEKVKVSPAE----- 393 (600)
Q Consensus 320 -~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~~~~~t~a~----- 393 (600)
..-.+|++|+|+|..+.+|.+|+. || ..|+++..+.++..+|+++||-. ..++..++.+.+
T Consensus 461 ~yDLS~VmFiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~LiP----------k~~~~~gL~~~el~i~d 527 (782)
T COG0466 461 PYDLSKVMFIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHLIP----------KQLKEHGLKKGELTITD 527 (782)
T ss_pred ccchhheEEEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhcch----------HHHHHcCCCccceeecH
Confidence 001359999999999999999999 99 59999999999999999999842 122222232222
Q ss_pred -HHHHHHhcCCHHHHHHHHHHHHHhhh
Q 041382 394 -VAGELMKAKGSKTSLEDFITYLESKE 419 (600)
Q Consensus 394 -i~~~l~~~~~~~~al~~l~~~l~~~~ 419 (600)
....+++.+..++.++.|.+.+....
T Consensus 528 ~ai~~iI~~YTREAGVR~LeR~i~ki~ 554 (782)
T COG0466 528 EAIKDIIRYYTREAGVRNLEREIAKIC 554 (782)
T ss_pred HHHHHHHHHHhHhhhhhHHHHHHHHHH
Confidence 22334556667777777766654433
No 57
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.72 E-value=4.2e-17 Score=187.03 Aligned_cols=249 Identities=16% Similarity=0.232 Sum_probs=163.1
Q ss_pred CccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc----------CCcEEEEec
Q 041382 183 TFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM----------NYDIYNLNL 252 (600)
Q Consensus 183 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l----------~~~~~~l~~ 252 (600)
.++.++|.++...++++.+... .+.++||+||||||||++|+++|..+ +..++.++.
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r~-------------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCRR-------------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhcc-------------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 5788999999888888766431 23588999999999999999999864 556777765
Q ss_pred CccCC--------hhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCC
Q 041382 253 SVVTS--------DSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCG 322 (600)
Q Consensus 253 ~~~~~--------~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~ 322 (600)
+.+.. +..++.++... ..++||||||||.+++ .+... . ....+..+|.. +...
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g--~g~~~---------~-g~~d~~nlLkp---~L~~-- 313 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIG--AGAAS---------G-GQVDAANLIKP---LLSS-- 313 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhc--cCCCC---------C-cHHHHHHHHHH---HHhC--
Confidence 55432 23355555433 4688999999999976 11100 0 01112222222 2112
Q ss_pred CeeEEEEecCCcC-----cCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCC--CccHHHHHHHhhhcCCCHHHHH
Q 041382 323 DEKITVFTTNYKD-----RIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIND--HDLYCHIEKLMEKVKVSPAEVA 395 (600)
Q Consensus 323 ~~~iiI~TTN~~~-----~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~--~~~~~~i~~l~~~~~~t~a~i~ 395 (600)
+++.+|++||.++ ..||||.| ||+ .|.++.|+.+++..|++.+...+. |...-....+...+.+|..++.
T Consensus 314 g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~ 390 (758)
T PRK11034 314 GKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYIN 390 (758)
T ss_pred CCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhcccc
Confidence 4588999998765 47999999 995 899999999999999997665432 2111111111111223333343
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCcc
Q 041382 396 GELMKAKGSKTSLEDFITYLESKESQEEKSSTAPPLASNVDGNRPEPQENGNNISKSGVQDQSSHTETEAADMGNVGGYS 475 (600)
Q Consensus 396 ~~l~~~~~~~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~~~s~~~~~~~~~v~v~g~~ 475 (600)
+.. -|+.|++-+.++....+.... . . . .
T Consensus 391 ~r~----lPdKaidlldea~a~~~~~~~-----------------~------------------~---~-~--------- 418 (758)
T PRK11034 391 DRH----LPDKAIDVIDEAGARARLMPV-----------------S------------------K---R-K--------- 418 (758)
T ss_pred Ccc----ChHHHHHHHHHHHHhhccCcc-----------------c------------------c---c-c---------
Confidence 333 389999999988875433100 0 0 0 0
Q ss_pred hhhHHHHHHHHHHhhhhHHHhcCccchhhHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHhC
Q 041382 476 VKAEFANIIKAIFSKHGDIAANSCLQSKQCRSSLLEIVCRIIQKLQKAKLKDLKETELKSMLSELQDLESM 546 (600)
Q Consensus 476 v~~~~~~~v~~~~~k~~di~~~~~~~~~~~r~~~~~~l~~vi~~l~~~p~~~ls~~el~~~~~~~~~L~~~ 546 (600)
+..-.+.|+.+|+.++|+|+..+.++|..++.++...|++.
T Consensus 419 ------------------------------~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ 459 (758)
T PRK11034 419 ------------------------------KTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKML 459 (758)
T ss_pred ------------------------------cccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcce
Confidence 00112448999999999999999999999999888887653
No 58
>CHL00181 cbbX CbbX; Provisional
Probab=99.72 E-value=2.7e-16 Score=162.28 Aligned_cols=170 Identities=16% Similarity=0.215 Sum_probs=124.3
Q ss_pred cccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCc-c--eeeeCCCCCCHHHHHHHHHHHcC-------CcEEEEecCc
Q 041382 185 GTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKR-G--YLLYGPPGTGKSSLIAAMANYMN-------YDIYNLNLSV 254 (600)
Q Consensus 185 ~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~r-g--iLL~GppGtGKTsla~alA~~l~-------~~~~~l~~~~ 254 (600)
++++|.+++|++|.+.+.. +..+..+...|..++. | +||+||||||||++|+++|+.+. .+++.++...
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 4799999999999987754 4445677778876542 3 79999999999999999999762 3577887655
Q ss_pred cCC------hhHHHHHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEE
Q 041382 255 VTS------DSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITV 328 (600)
Q Consensus 255 ~~~------~~~l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI 328 (600)
+.+ ......++..+ .++||||||+|.+.. .+. ...........|+..|+... .+++||
T Consensus 102 l~~~~~g~~~~~~~~~l~~a-~ggVLfIDE~~~l~~--~~~---------~~~~~~e~~~~L~~~me~~~----~~~~vI 165 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKA-MGGVLFIDEAYYLYK--PDN---------ERDYGSEAIEILLQVMENQR----DDLVVI 165 (287)
T ss_pred HHHHHhccchHHHHHHHHHc-cCCEEEEEccchhcc--CCC---------ccchHHHHHHHHHHHHhcCC----CCEEEE
Confidence 431 22345556554 468999999999853 111 11223456777888887542 347777
Q ss_pred EecCCcC-----cCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCC
Q 041382 329 FTTNYKD-----RIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIND 373 (600)
Q Consensus 329 ~TTN~~~-----~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~ 373 (600)
++++... .++|+|.+ ||+.+|+|++++.+++.+|+..++....
T Consensus 166 ~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~ 213 (287)
T CHL00181 166 FAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQ 213 (287)
T ss_pred EeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhc
Confidence 7775321 34699999 9999999999999999999999987543
No 59
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.71 E-value=3.1e-16 Score=163.55 Aligned_cols=159 Identities=17% Similarity=0.214 Sum_probs=121.3
Q ss_pred CccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCChhHHH
Q 041382 183 TFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLE 262 (600)
Q Consensus 183 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~~~~l~ 262 (600)
+|++++|.+++++.+...+......+ ..+.+++||||||||||++++++|+.++.++..++.+.......+.
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~--------~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~ 73 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQ--------EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLA 73 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcC--------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHH
Confidence 68999999999999887775443321 2235799999999999999999999999998887766555556677
Q ss_pred HHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCcc--------------ccCCCeeEEE
Q 041382 263 YLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLL--------------CCCGDEKITV 328 (600)
Q Consensus 263 ~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~--------------~~~~~~~iiI 328 (600)
..+.....+.||||||+|.+.+ .....|++.|+... .......++|
T Consensus 74 ~~l~~~~~~~vl~iDEi~~l~~--------------------~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li 133 (305)
T TIGR00635 74 AILTNLEEGDVLFIDEIHRLSP--------------------AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLV 133 (305)
T ss_pred HHHHhcccCCEEEEehHhhhCH--------------------HHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEE
Confidence 7777777889999999998843 01122333333211 0011237889
Q ss_pred EecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCc
Q 041382 329 FTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDI 371 (600)
Q Consensus 329 ~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~ 371 (600)
++||++..+++++++ ||...+.+++++.++..++++.....
T Consensus 134 ~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~ 174 (305)
T TIGR00635 134 GATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGL 174 (305)
T ss_pred EecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHH
Confidence 999999999999999 99999999999999999999876653
No 60
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.70 E-value=2.1e-16 Score=163.06 Aligned_cols=169 Identities=14% Similarity=0.183 Sum_probs=126.2
Q ss_pred ccccChhHHHHHHHHHHHHHhCHHHHHHhCCCC---CcceeeeCCCCCCHHHHHHHHHHHcC-------CcEEEEecCcc
Q 041382 186 TLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVW---KRGYLLYGPPGTGKSSLIAAMANYMN-------YDIYNLNLSVV 255 (600)
Q Consensus 186 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~---~rgiLL~GppGtGKTsla~alA~~l~-------~~~~~l~~~~~ 255 (600)
.++|.+++|+.|.+.+.. ...+..+.+.|.+. +.++||+||||||||++|+++|..+. .+++.+++.++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 689999999999887765 55667777888764 34899999999999999999999773 26888887555
Q ss_pred C------ChhHHHHHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEE
Q 041382 256 T------SDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVF 329 (600)
Q Consensus 256 ~------~~~~l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~ 329 (600)
. +...+..+|..+ .++||||||+|.+.+ .+. ...........|+..|+... .++++|+
T Consensus 102 ~~~~~g~~~~~~~~~~~~a-~~gvL~iDEi~~L~~--~~~---------~~~~~~~~~~~Ll~~le~~~----~~~~vI~ 165 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRA-MGGVLFIDEAYYLYR--PDN---------ERDYGQEAIEILLQVMENQR----DDLVVIL 165 (284)
T ss_pred hHhhcccchHHHHHHHHHc-cCcEEEEechhhhcc--CCC---------ccchHHHHHHHHHHHHhcCC----CCEEEEE
Confidence 3 224455666655 469999999998843 111 11223456677888887532 3477777
Q ss_pred ecCC--cCc---CCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCC
Q 041382 330 TTNY--KDR---IDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIND 373 (600)
Q Consensus 330 TTN~--~~~---Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~ 373 (600)
+++. .+. ++|+|.+ ||+..|+||+++.+++..|++.++....
T Consensus 166 a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~ 212 (284)
T TIGR02880 166 AGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQ 212 (284)
T ss_pred eCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhc
Confidence 7653 232 4899999 9999999999999999999999987643
No 61
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.69 E-value=6.9e-16 Score=152.39 Aligned_cols=172 Identities=20% Similarity=0.285 Sum_probs=144.2
Q ss_pred cccCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEe
Q 041382 175 GVNLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLN 251 (600)
Q Consensus 175 ~v~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~ 251 (600)
+|....|+.+++|+|.+.+|+.|.+....|+.. . +...+||||++|||||++++|+.+++ |+.++.++
T Consensus 17 ~i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G--------~-pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~ 87 (249)
T PF05673_consen 17 PIKHPDPIRLDDLIGIERQKEALIENTEQFLQG--------L-PANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVS 87 (249)
T ss_pred ecCCCCCCCHHHhcCHHHHHHHHHHHHHHHHcC--------C-CCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEEC
Confidence 677778899999999999999999999999874 2 45689999999999999999999976 78899999
Q ss_pred cCccCChhHHHHHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEec
Q 041382 252 LSVVTSDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTT 331 (600)
Q Consensus 252 ~~~~~~~~~l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TT 331 (600)
-.++.+-..+...+...+.+-|||+||+- +. ........|-..|||-....+++++|.+|+
T Consensus 88 k~~L~~l~~l~~~l~~~~~kFIlf~DDLs--Fe-----------------~~d~~yk~LKs~LeGgle~~P~NvliyATS 148 (249)
T PF05673_consen 88 KEDLGDLPELLDLLRDRPYKFILFCDDLS--FE-----------------EGDTEYKALKSVLEGGLEARPDNVLIYATS 148 (249)
T ss_pred HHHhccHHHHHHHHhcCCCCEEEEecCCC--CC-----------------CCcHHHHHHHHHhcCccccCCCcEEEEEec
Confidence 88888888888888888899999999973 21 122356778889999888888999999999
Q ss_pred CCcCcCCH-----------------------HHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCcc
Q 041382 332 NYKDRIDP-----------------------ALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDL 376 (600)
Q Consensus 332 N~~~~Ld~-----------------------aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~ 376 (600)
|+...++. +|-. ||+..|.|.+|+.++..+|++.|+...+...
T Consensus 149 NRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsD--RFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~ 214 (249)
T PF05673_consen 149 NRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSD--RFGLWLSFYPPDQEEYLAIVRHYAERYGLEL 214 (249)
T ss_pred chhhccchhhhhccCCCccccCcchHHHHHHhHHH--hCCcEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 97554433 2334 9999999999999999999999997655444
No 62
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.69 E-value=6.7e-16 Score=179.73 Aligned_cols=159 Identities=26% Similarity=0.259 Sum_probs=116.1
Q ss_pred ccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCCh-------
Q 041382 186 TLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSD------- 258 (600)
Q Consensus 186 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~~------- 258 (600)
+++|.+++|++|.+.+...... +...+.++||+||||||||++|+++|+.++.+++.++++.+.+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 3789999999999877544321 22233479999999999999999999999999999987665322
Q ss_pred --------hHHHHHHhhC-CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcC-----cccc----
Q 041382 259 --------SSLEYLLLHV-PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDG-----LLCC---- 320 (600)
Q Consensus 259 --------~~l~~~~~~~-~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg-----~~~~---- 320 (600)
..+...|..+ ..+.||||||||.+.+ +. .+. ..+.||..||. +...
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~--~~-----------~~~---~~~aLl~~ld~~~~~~f~d~~~~~ 457 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGS--SF-----------RGD---PASALLEVLDPEQNNAFSDHYLDV 457 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCCEEEEechhhcCC--cc-----------CCC---HHHHHHHhcCHHhcCccccccCCc
Confidence 2334444443 3455999999999853 11 011 23556666653 1100
Q ss_pred --CCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcC
Q 041382 321 --CGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLD 370 (600)
Q Consensus 321 --~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~ 370 (600)
.-.++++|+|||.++.+||+|++ ||+ .|+|+.|+.+++.+|+++|+.
T Consensus 458 ~~d~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~ 506 (775)
T TIGR00763 458 PFDLSKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLI 506 (775)
T ss_pred eeccCCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHH
Confidence 01358899999999999999999 995 899999999999999998873
No 63
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.67 E-value=1.4e-15 Score=150.94 Aligned_cols=185 Identities=16% Similarity=0.190 Sum_probs=140.9
Q ss_pred CCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCC
Q 041382 178 LDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTS 257 (600)
Q Consensus 178 ~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~ 257 (600)
.-+|.+|++.+|++++|+.+.=.+..-..+.+ ..-.+|||||||.||||||..||+++|.++-..+...+..
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e--------~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK 90 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGE--------ALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK 90 (332)
T ss_pred ccCcccHHHhcChHHHHHHHHHHHHHHHhcCC--------CcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC
Confidence 44689999999999999988776655443322 2247999999999999999999999999999999998988
Q ss_pred hhHHHHHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCcc-----cc---------CCC
Q 041382 258 DSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLL-----CC---------CGD 323 (600)
Q Consensus 258 ~~~l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~-----~~---------~~~ 323 (600)
..++..++.......||||||||.+.+ ..-.-|...|+.+. .. .-.
T Consensus 91 ~gDlaaiLt~Le~~DVLFIDEIHrl~~--------------------~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLp 150 (332)
T COG2255 91 PGDLAAILTNLEEGDVLFIDEIHRLSP--------------------AVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLP 150 (332)
T ss_pred hhhHHHHHhcCCcCCeEEEehhhhcCh--------------------hHHHHhhhhhhheeEEEEEccCCccceEeccCC
Confidence 899999999999999999999999853 11112333443221 00 012
Q ss_pred eeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHH-HHHHHhhhcCCCHH
Q 041382 324 EKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYC-HIEKLMEKVKVSPA 392 (600)
Q Consensus 324 ~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~-~i~~l~~~~~~t~a 392 (600)
.+-+|++|.+...|...|+. ||+...++.+.+.++..+|+.+.....+....+ ....++....-||.
T Consensus 151 pFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPR 218 (332)
T COG2255 151 PFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPR 218 (332)
T ss_pred CeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcH
Confidence 46789999999999999999 999999999999999999999877654444332 23344444455665
No 64
>PRK04195 replication factor C large subunit; Provisional
Probab=99.65 E-value=1.8e-15 Score=167.52 Aligned_cols=163 Identities=21% Similarity=0.288 Sum_probs=125.3
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT 256 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~ 256 (600)
....|.+|++++|++++++.+...+..+.+ |. +++++|||||||||||++|+++|++++.+++.+++++..
T Consensus 6 eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~-~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r 76 (482)
T PRK04195 6 EKYRPKTLSDVVGNEKAKEQLREWIESWLK--------GK-PKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQR 76 (482)
T ss_pred hhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CC-CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccc
Confidence 788999999999999999999998876653 22 257999999999999999999999999999999998876
Q ss_pred ChhHHHHHHhhC--------CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEE
Q 041382 257 SDSSLEYLLLHV--------PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITV 328 (600)
Q Consensus 257 ~~~~l~~~~~~~--------~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI 328 (600)
+...+....... ..+.||+|||+|.+.+ + .....+..|++.++.. ...+|
T Consensus 77 ~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~---~-------------~d~~~~~aL~~~l~~~------~~~iI 134 (482)
T PRK04195 77 TADVIERVAGEAATSGSLFGARRKLILLDEVDGIHG---N-------------EDRGGARAILELIKKA------KQPII 134 (482)
T ss_pred cHHHHHHHHHHhhccCcccCCCCeEEEEecCccccc---c-------------cchhHHHHHHHHHHcC------CCCEE
Confidence 655555544332 2477999999998843 0 0112345566666532 23467
Q ss_pred EecCCcCcCCH-HHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCC
Q 041382 329 FTTNYKDRIDP-ALLRAGRMDRHINLSYCTFSTFKQLAANYLDIND 373 (600)
Q Consensus 329 ~TTN~~~~Ld~-aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~ 373 (600)
++||.+..+++ .|.+ |+ ..|.|+.|+.++...+++..+...+
T Consensus 135 li~n~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~eg 177 (482)
T PRK04195 135 LTANDPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEG 177 (482)
T ss_pred EeccCccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcC
Confidence 78898888887 5655 55 6899999999999999988775543
No 65
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.63 E-value=2.1e-15 Score=156.38 Aligned_cols=152 Identities=24% Similarity=0.289 Sum_probs=112.4
Q ss_pred CCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCC
Q 041382 178 LDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTS 257 (600)
Q Consensus 178 ~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~ 257 (600)
.-+|.+|++++|++.+.-. -..+.+.+.. ..-.+.+|||||||||||+|+.||+.++.+|..++... .+
T Consensus 17 rmRP~~lde~vGQ~HLlg~-~~~lrr~v~~---------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-~g 85 (436)
T COG2256 17 RLRPKSLDEVVGQEHLLGE-GKPLRRAVEA---------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-SG 85 (436)
T ss_pred HhCCCCHHHhcChHhhhCC-CchHHHHHhc---------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-cc
Confidence 3469999999999876522 1112222221 11238999999999999999999999999999998643 46
Q ss_pred hhHHHHHHhhCC------CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEec
Q 041382 258 DSSLEYLLLHVP------NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTT 331 (600)
Q Consensus 258 ~~~l~~~~~~~~------~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TT 331 (600)
..+++.++..+. +..|||||||+.+-. . --..||-.++. +.+++|++|
T Consensus 86 vkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK----~----------------QQD~lLp~vE~------G~iilIGAT 139 (436)
T COG2256 86 VKDLREIIEEARKNRLLGRRTILFLDEIHRFNK----A----------------QQDALLPHVEN------GTIILIGAT 139 (436)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEehhhhcCh----h----------------hhhhhhhhhcC------CeEEEEecc
Confidence 678888887762 479999999999832 1 11236666653 347888755
Q ss_pred --CCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhc
Q 041382 332 --NYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYL 369 (600)
Q Consensus 332 --N~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l 369 (600)
|..-.|.+||++ |. +...+.+.+.++..+++++-+
T Consensus 140 TENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~ 176 (436)
T COG2256 140 TENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRAL 176 (436)
T ss_pred CCCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHH
Confidence 556789999999 87 688999999999999988743
No 66
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1e-14 Score=159.79 Aligned_cols=156 Identities=17% Similarity=0.321 Sum_probs=117.0
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC-----------
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY----------- 245 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~----------- 245 (600)
...+|.+|++++|++.+++.+...+. . | ..+.++||||||||||||+|+++|+.++.
T Consensus 6 ~kyRP~~~~divGq~~i~~~L~~~i~----~-------~-~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~ 73 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHVKKLIINALK----K-------N-SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNE 73 (472)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHH----c-------C-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcc
Confidence 45689999999999998777665443 1 1 23457999999999999999999998864
Q ss_pred -------------cEEEEecCccCChhHHHHHHhhCC------CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHH
Q 041382 246 -------------DIYNLNLSVVTSDSSLEYLLLHVP------NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVT 306 (600)
Q Consensus 246 -------------~~~~l~~~~~~~~~~l~~~~~~~~------~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ 306 (600)
+++.++.+.-.+...++.+..... ...|++|||+|.+.. ..
T Consensus 74 c~~c~~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~--------------------~a 133 (472)
T PRK14962 74 CRACRSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK--------------------EA 133 (472)
T ss_pred cHHHHHHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH--------------------HH
Confidence 567777654444455665544332 356999999998842 24
Q ss_pred HHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCc
Q 041382 307 LAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDI 371 (600)
Q Consensus 307 ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~ 371 (600)
...|+..++.. +..+++|++|+.+..+++++.+ |+ ..++|.+++.++...+++.....
T Consensus 134 ~~~LLk~LE~p----~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~ 191 (472)
T PRK14962 134 FNALLKTLEEP----PSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEA 191 (472)
T ss_pred HHHHHHHHHhC----CCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHH
Confidence 56678887753 2347777777788899999999 88 58999999999988888876643
No 67
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=5.9e-15 Score=159.72 Aligned_cols=156 Identities=15% Similarity=0.310 Sum_probs=117.3
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC-----------
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY----------- 245 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~----------- 245 (600)
...+|.+|++++|++.+...|...+.. | ..+..+|||||||||||++|+++|+.++.
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~L~~~i~~-----------~-ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~ 77 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGALQNALKS-----------G-KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNE 77 (484)
T ss_pred HHhCCCCHHHHhChHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCC
Confidence 567899999999999998887666531 1 12356999999999999999999999865
Q ss_pred -------------cEEEEecCccCChhHHHHHHhhC------CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHH
Q 041382 246 -------------DIYNLNLSVVTSDSSLEYLLLHV------PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVT 306 (600)
Q Consensus 246 -------------~~~~l~~~~~~~~~~l~~~~~~~------~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ 306 (600)
+++.++...-.+...++.+.... ....|+||||+|.+-. ..
T Consensus 78 C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~--------------------~A 137 (484)
T PRK14956 78 CTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD--------------------QS 137 (484)
T ss_pred CcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH--------------------HH
Confidence 35555554333445555554333 2356999999998832 35
Q ss_pred HHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCc
Q 041382 307 LAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDI 371 (600)
Q Consensus 307 ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~ 371 (600)
.+.||..|+.. ...+++|++|+.++.|.+++++ |+ .++.|..++.++..+.++..+..
T Consensus 138 ~NALLKtLEEP----p~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~ 195 (484)
T PRK14956 138 FNALLKTLEEP----PAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKI 195 (484)
T ss_pred HHHHHHHhhcC----CCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHH
Confidence 67788888653 3468899999999999999999 98 58999999988877777766554
No 68
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=5.3e-15 Score=163.71 Aligned_cols=157 Identities=17% Similarity=0.233 Sum_probs=122.9
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC-----------
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY----------- 245 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~----------- 245 (600)
...+|.+|++|+|++.+++.|...+..- ..++.|||+||+|||||++++.+|+.++.
T Consensus 8 rKYRPqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~ 75 (700)
T PRK12323 8 RKWRPRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITA 75 (700)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCC
Confidence 4568999999999999998887766421 23468999999999999999999998864
Q ss_pred ------------------cEEEEecCccCChhHHHHHHhhCC------CcceeeecchhhhhhhhccccCCCCCCCCCCC
Q 041382 246 ------------------DIYNLNLSVVTSDSSLEYLLLHVP------NRSILVVEDIDCSIKLQNRESQKGDEPADSYR 301 (600)
Q Consensus 246 ------------------~~~~l~~~~~~~~~~l~~~~~~~~------~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~ 301 (600)
+++.++..+-.+...++.++.... ...|+||||+|.+-.
T Consensus 76 ~PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~----------------- 138 (700)
T PRK12323 76 QPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN----------------- 138 (700)
T ss_pred CCCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH-----------------
Confidence 456666554445566776665532 356999999998832
Q ss_pred ChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcC
Q 041382 302 GPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIN 372 (600)
Q Consensus 302 ~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~ 372 (600)
...+.||..|+.- ...++||++||.+..|.+.+++ |+ ..+.|+.++.++..+.++.++..+
T Consensus 139 ---~AaNALLKTLEEP----P~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~E 199 (700)
T PRK12323 139 ---HAFNAMLKTLEEP----PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEE 199 (700)
T ss_pred ---HHHHHHHHhhccC----CCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHc
Confidence 3567788888753 3458899999999999999999 98 799999999999888888776543
No 69
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=2.2e-14 Score=160.68 Aligned_cols=157 Identities=17% Similarity=0.242 Sum_probs=121.5
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC-----------
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY----------- 245 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~----------- 245 (600)
...+|.+|++|+|++.+++.|...+.. ...++.||||||+|||||++++++|+.++.
T Consensus 8 rKYRPqtFdEVIGQe~Vv~~L~~aL~~------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~ 75 (830)
T PRK07003 8 RKWRPKDFASLVGQEHVVRALTHALDG------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGV 75 (830)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHhc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcc
Confidence 456799999999999999888766531 123458999999999999999999998853
Q ss_pred -------------cEEEEecCccCChhHHHHHHhhC------CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHH
Q 041382 246 -------------DIYNLNLSVVTSDSSLEYLLLHV------PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVT 306 (600)
Q Consensus 246 -------------~~~~l~~~~~~~~~~l~~~~~~~------~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ 306 (600)
+++.+|..+-.+...++.++... ....|+||||+|.+-. ..
T Consensus 76 C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~--------------------~A 135 (830)
T PRK07003 76 CRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN--------------------HA 135 (830)
T ss_pred cHHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH--------------------HH
Confidence 45666655434455666666553 2356999999998832 34
Q ss_pred HHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcC
Q 041382 307 LAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIN 372 (600)
Q Consensus 307 ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~ 372 (600)
.+.||..|+... ..++||++||++.+|.+.|++ |+ ..+.|..++.++..+.++..+..+
T Consensus 136 ~NALLKtLEEPP----~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~E 194 (830)
T PRK07003 136 FNAMLKTLEEPP----PHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEE 194 (830)
T ss_pred HHHHHHHHHhcC----CCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHc
Confidence 577888887642 358899999999999999999 98 799999999999988888777643
No 70
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.60 E-value=4.8e-14 Score=147.79 Aligned_cols=159 Identities=18% Similarity=0.160 Sum_probs=117.8
Q ss_pred cccccccccCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEE
Q 041382 169 DRWSSSGVNLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIY 248 (600)
Q Consensus 169 ~~w~~~~v~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~ 248 (600)
-.|. ....|.+|++++|++++++.+...+. .| ..+..+|||||||+|||++++++|++++.+++
T Consensus 9 ~~w~----~kyrP~~~~~~~~~~~~~~~l~~~~~-----------~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~ 72 (316)
T PHA02544 9 FMWE----QKYRPSTIDECILPAADKETFKSIVK-----------KG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVL 72 (316)
T ss_pred Ccce----eccCCCcHHHhcCcHHHHHHHHHHHh-----------cC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccce
Confidence 3676 78899999999999999988877663 12 23456777999999999999999999999999
Q ss_pred EEecCccCChhHHHHH----HhhC---CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccC
Q 041382 249 NLNLSVVTSDSSLEYL----LLHV---PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCC 321 (600)
Q Consensus 249 ~l~~~~~~~~~~l~~~----~~~~---~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~ 321 (600)
.++++. .....++.. .... ..+.||+|||+|.+.. . .....|...++...
T Consensus 73 ~i~~~~-~~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~----------------~---~~~~~L~~~le~~~--- 129 (316)
T PHA02544 73 FVNGSD-CRIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL----------------A---DAQRHLRSFMEAYS--- 129 (316)
T ss_pred EeccCc-ccHHHHHHHHHHHHHhhcccCCCeEEEEECcccccC----------------H---HHHHHHHHHHHhcC---
Confidence 999887 322222222 1111 3578999999997721 0 11223444455432
Q ss_pred CCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcC
Q 041382 322 GDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLD 370 (600)
Q Consensus 322 ~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~ 370 (600)
....+|+|||.+..+++++.+ || ..+.++.|+.+++..+++.++.
T Consensus 130 -~~~~~Ilt~n~~~~l~~~l~s--R~-~~i~~~~p~~~~~~~il~~~~~ 174 (316)
T PHA02544 130 -KNCSFIITANNKNGIIEPLRS--RC-RVIDFGVPTKEEQIEMMKQMIV 174 (316)
T ss_pred -CCceEEEEcCChhhchHHHHh--hc-eEEEeCCCCHHHHHHHHHHHHH
Confidence 346788999999999999999 88 4899999999999988886543
No 71
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=3.1e-14 Score=158.08 Aligned_cols=157 Identities=17% Similarity=0.309 Sum_probs=121.1
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC-----------
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY----------- 245 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~----------- 245 (600)
...+|.+|++|+|++.+++.|...+. .| ..+.+|||+||||||||++|+++|+.++.
T Consensus 7 rKyRPktFddVIGQe~vv~~L~~aI~-----------~g-rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~ 74 (702)
T PRK14960 7 RKYRPRNFNELVGQNHVSRALSSALE-----------RG-RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEV 74 (702)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHH-----------cC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCcc
Confidence 34679999999999999888877663 11 23468999999999999999999998864
Q ss_pred -------------cEEEEecCccCChhHHHHHHhhCC------CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHH
Q 041382 246 -------------DIYNLNLSVVTSDSSLEYLLLHVP------NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVT 306 (600)
Q Consensus 246 -------------~~~~l~~~~~~~~~~l~~~~~~~~------~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ 306 (600)
+++.++.++-.+...++.++.... +..|++|||+|.+-. ..
T Consensus 75 C~sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~--------------------~A 134 (702)
T PRK14960 75 CATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST--------------------HS 134 (702)
T ss_pred CHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH--------------------HH
Confidence 566677655445566777765542 346999999998832 24
Q ss_pred HHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcC
Q 041382 307 LAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIN 372 (600)
Q Consensus 307 ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~ 372 (600)
.+.|+..|+.. ...+.+|++|+.+..+++.+++ |+ ..+.|..++.++....++..+..+
T Consensus 135 ~NALLKtLEEP----P~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kE 193 (702)
T PRK14960 135 FNALLKTLEEP----PEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKE 193 (702)
T ss_pred HHHHHHHHhcC----CCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHc
Confidence 56788887754 2347788888889999999998 88 689999999999888887776544
No 72
>PLN03025 replication factor C subunit; Provisional
Probab=99.59 E-value=2.5e-14 Score=150.30 Aligned_cols=155 Identities=16% Similarity=0.173 Sum_probs=112.4
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcC-----CcEEEEe
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMN-----YDIYNLN 251 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~-----~~~~~l~ 251 (600)
...+|.+|++++|++++++.|...+. . | .. .++|||||||||||++|.++|+++. ..++.++
T Consensus 5 ~kyrP~~l~~~~g~~~~~~~L~~~~~----~-------~-~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln 71 (319)
T PLN03025 5 EKYRPTKLDDIVGNEDAVSRLQVIAR----D-------G-NM-PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN 71 (319)
T ss_pred hhcCCCCHHHhcCcHHHHHHHHHHHh----c-------C-CC-ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec
Confidence 77899999999999998887765432 1 1 11 2699999999999999999999872 3466677
Q ss_pred cCccCChhHHHHHHhh---C------CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCC
Q 041382 252 LSVVTSDSSLEYLLLH---V------PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCG 322 (600)
Q Consensus 252 ~~~~~~~~~l~~~~~~---~------~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~ 322 (600)
.++..+...++..+.. . ..+.|++|||+|.+.. ...+.|+..|+...
T Consensus 72 ~sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~--------------------~aq~aL~~~lE~~~---- 127 (319)
T PLN03025 72 ASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS--------------------GAQQALRRTMEIYS---- 127 (319)
T ss_pred ccccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH--------------------HHHHHHHHHHhccc----
Confidence 7665554445544321 1 2357999999998843 12344666665432
Q ss_pred CeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCc
Q 041382 323 DEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDI 371 (600)
Q Consensus 323 ~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~ 371 (600)
....+|++||.+..+.++|.+ |+ ..++|+.|+.++....++.....
T Consensus 128 ~~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~ 173 (319)
T PLN03025 128 NTTRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEA 173 (319)
T ss_pred CCceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHH
Confidence 224577889989999999999 87 58999999999988888766543
No 73
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.58 E-value=8.5e-15 Score=146.92 Aligned_cols=158 Identities=23% Similarity=0.276 Sum_probs=112.8
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC------cEEEE
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY------DIYNL 250 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~------~~~~l 250 (600)
....|.+|++++|++.+.+.+...+.. .. -..||||||||||||+.|.+.|.+++- .+..+
T Consensus 28 eKYrPkt~de~~gQe~vV~~L~~a~~~-~~------------lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~l 94 (346)
T KOG0989|consen 28 EKYRPKTFDELAGQEHVVQVLKNALLR-RI------------LPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLEL 94 (346)
T ss_pred HHhCCCcHHhhcchHHHHHHHHHHHhh-cC------------CceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhh
Confidence 789999999999999999999887754 11 127999999999999999999999864 23334
Q ss_pred ecCccCChhHH-------HHHHhhC----CC----cceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhc
Q 041382 251 NLSVVTSDSSL-------EYLLLHV----PN----RSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAID 315 (600)
Q Consensus 251 ~~~~~~~~~~l-------~~~~~~~----~~----~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ld 315 (600)
+.++..+.+-. ..+.... .. .-|++|||.|.+.. .+-+.|.+.|+
T Consensus 95 naSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts--------------------daq~aLrr~mE 154 (346)
T KOG0989|consen 95 NASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS--------------------DAQAALRRTME 154 (346)
T ss_pred cccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhH--------------------HHHHHHHHHHh
Confidence 44443322111 1111111 12 25999999998842 35567888888
Q ss_pred CccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCC
Q 041382 316 GLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDH 374 (600)
Q Consensus 316 g~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~ 374 (600)
... ....+|+.||+.+.|++.+.+ |+ ..+.|+....+.....++.....++.
T Consensus 155 ~~s----~~trFiLIcnylsrii~pi~S--RC-~KfrFk~L~d~~iv~rL~~Ia~~E~v 206 (346)
T KOG0989|consen 155 DFS----RTTRFILICNYLSRIIRPLVS--RC-QKFRFKKLKDEDIVDRLEKIASKEGV 206 (346)
T ss_pred ccc----cceEEEEEcCChhhCChHHHh--hH-HHhcCCCcchHHHHHHHHHHHHHhCC
Confidence 753 347899999999999999999 98 47778777776666666655544433
No 74
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=6.5e-14 Score=149.66 Aligned_cols=157 Identities=15% Similarity=0.263 Sum_probs=115.3
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC-----------
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY----------- 245 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~----------- 245 (600)
....|.+|++++|++.+++.+...+.. | ..++.+||+||||||||++|+++|+.++.
T Consensus 8 ~kyrP~~~~~iiGq~~~~~~l~~~~~~-----------~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~ 75 (363)
T PRK14961 8 RKWRPQYFRDIIGQKHIVTAISNGLSL-----------G-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRK 75 (363)
T ss_pred HHhCCCchhhccChHHHHHHHHHHHHc-----------C-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 345799999999999998887665531 1 23468999999999999999999998852
Q ss_pred -------------cEEEEecCccCChhHHHHHHhhC------CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHH
Q 041382 246 -------------DIYNLNLSVVTSDSSLEYLLLHV------PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVT 306 (600)
Q Consensus 246 -------------~~~~l~~~~~~~~~~l~~~~~~~------~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ 306 (600)
+++.++.+.-.....++.++... ....|++|||+|.+-. ..
T Consensus 76 c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~--------------------~a 135 (363)
T PRK14961 76 CIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR--------------------HS 135 (363)
T ss_pred CHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH--------------------HH
Confidence 34445543323344566555443 1346999999998732 24
Q ss_pred HHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcC
Q 041382 307 LAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIN 372 (600)
Q Consensus 307 ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~ 372 (600)
.+.||..++.. +..+.+|++|+.++.+.+++.+ |+ ..++|++++.++...++...+...
T Consensus 136 ~naLLk~lEe~----~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~ 194 (363)
T PRK14961 136 FNALLKTLEEP----PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKE 194 (363)
T ss_pred HHHHHHHHhcC----CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHc
Confidence 56688887753 2346777888888999999998 87 689999999999998888766543
No 75
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=7.3e-14 Score=153.84 Aligned_cols=158 Identities=19% Similarity=0.287 Sum_probs=120.5
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC-----------
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY----------- 245 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~----------- 245 (600)
...+|.+|++++|++.+++.+...+.. | ..+.++||+||||||||++|+++|+.++.
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~ai~~-----------~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~ 80 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYTILN-----------D-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIK 80 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcC
Confidence 567899999999999988877654421 1 23468999999999999999999998853
Q ss_pred -----------------cEEEEecCccCChhHHHHHHhhCC------CcceeeecchhhhhhhhccccCCCCCCCCCCCC
Q 041382 246 -----------------DIYNLNLSVVTSDSSLEYLLLHVP------NRSILVVEDIDCSIKLQNRESQKGDEPADSYRG 302 (600)
Q Consensus 246 -----------------~~~~l~~~~~~~~~~l~~~~~~~~------~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~ 302 (600)
+++.++..+-.+...++.++..+. ...|++|||+|.+..
T Consensus 81 ~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~------------------ 142 (507)
T PRK06645 81 TCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK------------------ 142 (507)
T ss_pred CCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH------------------
Confidence 345555544345567777766552 356999999998732
Q ss_pred hHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCC
Q 041382 303 PQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIND 373 (600)
Q Consensus 303 ~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~ 373 (600)
...+.|+..|+.. +..+++|++|+.++.+++++.+ |+ ..++|..++.++...+++..+..++
T Consensus 143 --~a~naLLk~LEep----p~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~eg 204 (507)
T PRK06645 143 --GAFNALLKTLEEP----PPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQEN 204 (507)
T ss_pred --HHHHHHHHHHhhc----CCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3466788887743 3457888888889999999999 88 6899999999999998888776543
No 76
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=8.9e-14 Score=152.08 Aligned_cols=158 Identities=15% Similarity=0.230 Sum_probs=122.9
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcC------------
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMN------------ 244 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~------------ 244 (600)
....|.+|++++|++.+++.+...+. .| ..++++||+|||||||||+|+.+|+.++
T Consensus 5 ~KyRP~~f~dliGQe~vv~~L~~a~~-----------~~-ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~ 72 (491)
T PRK14964 5 LKYRPSSFKDLVGQDVLVRILRNAFT-----------LN-KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGT 72 (491)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHH-----------cC-CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccc
Confidence 35679999999999998887765442 12 2356899999999999999999998652
Q ss_pred ------------CcEEEEecCccCChhHHHHHHhhCC------CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHH
Q 041382 245 ------------YDIYNLNLSVVTSDSSLEYLLLHVP------NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVT 306 (600)
Q Consensus 245 ------------~~~~~l~~~~~~~~~~l~~~~~~~~------~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ 306 (600)
.+++.+|.++-.+..+++.++.... ..-|++|||+|.+-. ..
T Consensus 73 C~~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~--------------------~A 132 (491)
T PRK14964 73 CHNCISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN--------------------SA 132 (491)
T ss_pred cHHHHHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH--------------------HH
Confidence 4678888776666677877766542 456999999998732 35
Q ss_pred HHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCC
Q 041382 307 LAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIND 373 (600)
Q Consensus 307 ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~ 373 (600)
.+.||..|+... ..+++|++|+.++.+.+.+++ |+ ..++|..++.++....+...+..++
T Consensus 133 ~NaLLK~LEePp----~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Eg 192 (491)
T PRK14964 133 FNALLKTLEEPA----PHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKEN 192 (491)
T ss_pred HHHHHHHHhCCC----CCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcC
Confidence 678888888642 457888888999999999999 88 6899999999998888887766543
No 77
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=8.6e-14 Score=154.84 Aligned_cols=292 Identities=24% Similarity=0.282 Sum_probs=186.8
Q ss_pred HhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC------ChhHHHHHHhhC--CCcceeee
Q 041382 205 RRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT------SDSSLEYLLLHV--PNRSILVV 276 (600)
Q Consensus 205 l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~------~~~~l~~~~~~~--~~~sIL~i 276 (600)
+..+..++..+..++++++++||||||||++++++|+. +.....++..... +...++..|..+ ..|+|+++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 34677889999999999999999999999999999999 5555555544433 345666777666 36799999
Q ss_pred cchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCC
Q 041382 277 EDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYC 356 (600)
Q Consensus 277 DeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p 356 (600)
|++|.+.+ .|.. ..........++++..+|++. .+. +++++.||.+..+|+++.+||||+..+.++.|
T Consensus 83 d~~~~~~~--~~~~-------~~~~~~~~v~~~l~~~~d~~~--~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 150 (494)
T COG0464 83 DEIDALAP--KRSS-------DQGEVERRVVAQLLALMDGLK--RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLP 150 (494)
T ss_pred chhhhccc--Cccc-------cccchhhHHHHHHHHhccccc--CCc-eEEEeecCCccccChhHhCccccceeeecCCC
Confidence 99999976 3322 123445677899999999997 555 88888999999999999999999999999999
Q ss_pred CHHHHHHHHHHhcCcCCCccHHHHHHHhh-hcCCCHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccccccCCCCCCCCCC
Q 041382 357 TFSTFKQLAANYLDINDHDLYCHIEKLME-KVKVSPAEVAGELMKAKGSKTSLEDFITYLESKESQEEKSSTAPPLASNV 435 (600)
Q Consensus 357 ~~e~r~~il~~~l~~~~~~~~~~i~~l~~-~~~~t~a~i~~~l~~~~~~~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~ 435 (600)
+...+.+++.................+.. ..+++.+++....- +.++..+...+ ...........
T Consensus 151 ~~~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~-----~~~~~~~~r~~---------~~~~~~~~~~~ 216 (494)
T COG0464 151 DEAGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAK-----EAALRELRRAI---------DLVGEYIGVTE 216 (494)
T ss_pred CHHHHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHH-----HHHHHHHHhhh---------ccCcccccccH
Confidence 99999888887654433222222222222 24577787776653 22222222221 00000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCcc-hhhHHHHHHHHHHhhhhHHHhcCccchhhH------HHH
Q 041382 436 DGNRPEPQENGNNISKSGVQDQSSHTETEAADMGNVGGYS-VKAEFANIIKAIFSKHGDIAANSCLQSKQC------RSS 508 (600)
Q Consensus 436 ~~~~~~~~~~~~~~S~~~~~~~~s~~~~~~~~~v~v~g~~-v~~~~~~~v~~~~~k~~di~~~~~~~~~~~------r~~ 508 (600)
+.. ....+....+ .+... ..+...|.+++|+. ++..+.+.+.++ .+||+.+.++....+.- .-+
T Consensus 217 ~~~--~~~l~~~~~~-~~~~~-----~~~~v~~~diggl~~~k~~l~e~v~~~-~~~~e~~~~~~~~~~~giLl~GpPGt 287 (494)
T COG0464 217 DDF--EEALKKVLPS-RGVLF-----EDEDVTLDDIGGLEEAKEELKEAIETP-LKRPELFRKLGLRPPKGVLLYGPPGT 287 (494)
T ss_pred HHH--HHHHHhcCcc-ccccc-----CCCCcceehhhcHHHHHHHHHHHHHhH-hhChHHHHhcCCCCCCeeEEECCCCC
Confidence 000 0000000000 01111 12247899999999 999999999999 99999988644444320 001
Q ss_pred HHHHHHHHHHHHhccccccccHHH
Q 041382 509 LLEIVCRIIQKLQKAKLKDLKETE 532 (600)
Q Consensus 509 ~~~~l~~vi~~l~~~p~~~ls~~e 532 (600)
-...|+.-|+..++.|.-.+.-.+
T Consensus 288 GKT~lAkava~~~~~~fi~v~~~~ 311 (494)
T COG0464 288 GKTLLAKAVALESRSRFISVKGSE 311 (494)
T ss_pred CHHHHHHHHHhhCCCeEEEeeCHH
Confidence 112355555555655554444433
No 78
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.55 E-value=7.5e-14 Score=151.73 Aligned_cols=152 Identities=22% Similarity=0.279 Sum_probs=112.9
Q ss_pred cCCCCCCccccccChhHHHH---HHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecC
Q 041382 177 NLDHPMTFGTLVMDGDLKET---VLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLS 253 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~---i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~ 253 (600)
...+|.+|++++|++.+... +...+. . ....+++|+||||||||++|+++|+.++.+++.+++.
T Consensus 4 ~~~RP~~l~d~vGq~~~v~~~~~L~~~i~----~---------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~ 70 (413)
T PRK13342 4 ERMRPKTLDEVVGQEHLLGPGKPLRRMIE----A---------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAV 70 (413)
T ss_pred hhhCCCCHHHhcCcHHHhCcchHHHHHHH----c---------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecc
Confidence 55789999999999987554 544442 1 1224799999999999999999999999999999876
Q ss_pred ccCChhHHHHHHhhC------CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEE
Q 041382 254 VVTSDSSLEYLLLHV------PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKIT 327 (600)
Q Consensus 254 ~~~~~~~l~~~~~~~------~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ii 327 (600)
.. +...++.++... ..+.||||||+|.+.. .....|+..++. ..+++
T Consensus 71 ~~-~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~--------------------~~q~~LL~~le~------~~iil 123 (413)
T PRK13342 71 TS-GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK--------------------AQQDALLPHVED------GTITL 123 (413)
T ss_pred cc-cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH--------------------HHHHHHHHHhhc------CcEEE
Confidence 43 344555555444 2678999999998742 123446666653 23566
Q ss_pred EEec--CCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCc
Q 041382 328 VFTT--NYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDI 371 (600)
Q Consensus 328 I~TT--N~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~ 371 (600)
|++| |....++++|++ |+ ..+.|++++.++...+++..+..
T Consensus 124 I~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 124 IGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred EEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHH
Confidence 6554 445689999999 88 78999999999999999987653
No 79
>PRK06893 DNA replication initiation factor; Validated
Probab=99.55 E-value=1.2e-13 Score=138.26 Aligned_cols=166 Identities=13% Similarity=0.160 Sum_probs=105.0
Q ss_pred cccCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEe
Q 041382 175 GVNLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLN 251 (600)
Q Consensus 175 ~v~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~ 251 (600)
++....+.+||+.++.+.. .....+.. .+. ..+.+.++||||||||||+|++|+|+++ +.....++
T Consensus 6 ~~~~~~~~~fd~f~~~~~~--~~~~~~~~------~~~---~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~ 74 (229)
T PRK06893 6 PIHQIDDETLDNFYADNNL--LLLDSLRK------NFI---DLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP 74 (229)
T ss_pred CCCCCCcccccccccCChH--HHHHHHHH------Hhh---ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee
Confidence 4566778899999876542 12222211 111 1122357999999999999999999986 45666666
Q ss_pred cCccCChhHHHHHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEec
Q 041382 252 LSVVTSDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTT 331 (600)
Q Consensus 252 ~~~~~~~~~l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TT 331 (600)
+.... ......+....+..+|+|||++.+.+ + ...... |++.++..... +..++|.|+
T Consensus 75 ~~~~~--~~~~~~~~~~~~~dlLilDDi~~~~~--~-------------~~~~~~---l~~l~n~~~~~--~~~illits 132 (229)
T PRK06893 75 LSKSQ--YFSPAVLENLEQQDLVCLDDLQAVIG--N-------------EEWELA---IFDLFNRIKEQ--GKTLLLISA 132 (229)
T ss_pred HHHhh--hhhHHHHhhcccCCEEEEeChhhhcC--C-------------hHHHHH---HHHHHHHHHHc--CCcEEEEeC
Confidence 54321 12224455556778999999998743 1 111223 44444433222 224445554
Q ss_pred -CCcCcCC---HHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCC
Q 041382 332 -NYKDRID---PALLRAGRMDRHINLSYCTFSTFKQLAANYLDIND 373 (600)
Q Consensus 332 -N~~~~Ld---~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~ 373 (600)
..|..++ |.|.++.+++..+.++.|+.+.|.+|++.......
T Consensus 133 ~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~ 178 (229)
T PRK06893 133 DCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG 178 (229)
T ss_pred CCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC
Confidence 4576665 89999556678999999999999999997765433
No 80
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=8.3e-14 Score=154.21 Aligned_cols=157 Identities=16% Similarity=0.276 Sum_probs=119.3
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC-----------
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY----------- 245 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~----------- 245 (600)
...+|.+|++|+|++.+++.+...+.. ...+..|||+||||||||++|+++|+.++.
T Consensus 8 ~kyRP~~f~divGq~~v~~~L~~~~~~------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~ 75 (509)
T PRK14958 8 RKWRPRCFQEVIGQAPVVRALSNALDQ------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCND 75 (509)
T ss_pred HHHCCCCHHHhcCCHHHHHHHHHHHHh------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCC
Confidence 456799999999999999988776632 123457999999999999999999998853
Q ss_pred -------------cEEEEecCccCChhHHHHHHhhCC------CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHH
Q 041382 246 -------------DIYNLNLSVVTSDSSLEYLLLHVP------NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVT 306 (600)
Q Consensus 246 -------------~~~~l~~~~~~~~~~l~~~~~~~~------~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ 306 (600)
+++.++..+-.+...++.++.... +..|++|||+|.+-. ..
T Consensus 76 C~~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~--------------------~a 135 (509)
T PRK14958 76 CENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG--------------------HS 135 (509)
T ss_pred CHHHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH--------------------HH
Confidence 267777655555666777665442 345999999998832 34
Q ss_pred HHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcC
Q 041382 307 LAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIN 372 (600)
Q Consensus 307 ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~ 372 (600)
.+.||..|+.. +..+.+|++|+.+..+.+.+++ |+ ..++|..++.++....++..+...
T Consensus 136 ~naLLk~LEep----p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~e 194 (509)
T PRK14958 136 FNALLKTLEEP----PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEE 194 (509)
T ss_pred HHHHHHHHhcc----CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHc
Confidence 67788888764 2447788888889999999999 88 688999988888776666665443
No 81
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=1.8e-13 Score=153.77 Aligned_cols=154 Identities=19% Similarity=0.305 Sum_probs=117.9
Q ss_pred CCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC------------
Q 041382 178 LDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY------------ 245 (600)
Q Consensus 178 ~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~------------ 245 (600)
..+|.+|++|+|++.+++.|...+.. | ..+..|||+||||||||++|+++|+.++.
T Consensus 9 KyRP~~f~divGQe~vv~~L~~~l~~-----------~-rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (647)
T PRK07994 9 KWRPQTFAEVVGQEHVLTALANALDL-----------G-RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGEC 76 (647)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCC
Confidence 45799999999999999877765532 1 23457999999999999999999998854
Q ss_pred ------------cEEEEecCccCChhHHHHHHhhCC------CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHH
Q 041382 246 ------------DIYNLNLSVVTSDSSLEYLLLHVP------NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTL 307 (600)
Q Consensus 246 ------------~~~~l~~~~~~~~~~l~~~~~~~~------~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~l 307 (600)
+++.++..+-.+...++.+..... ..-|+||||+|.+-. ...
T Consensus 77 ~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~--------------------~a~ 136 (647)
T PRK07994 77 DNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR--------------------HSF 136 (647)
T ss_pred HHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH--------------------HHH
Confidence 345565543334455666654432 345999999998832 356
Q ss_pred HHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcC
Q 041382 308 AGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLD 370 (600)
Q Consensus 308 s~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~ 370 (600)
+.||..|+.. ++.+++|++|+.+..|.+.+++ |+ ..++|..++.++....+...+.
T Consensus 137 NALLKtLEEP----p~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~ 192 (647)
T PRK07994 137 NALLKTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQ 192 (647)
T ss_pred HHHHHHHHcC----CCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHH
Confidence 7888888854 2457788888889999999999 87 7999999999998888887664
No 82
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.54 E-value=1.6e-13 Score=146.12 Aligned_cols=158 Identities=18% Similarity=0.350 Sum_probs=118.0
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcC------------
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMN------------ 244 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~------------ 244 (600)
....|.+|++++|.+.+++.+...+.. | ..++++|||||||+|||++++++|+.+.
T Consensus 6 ~~~rp~~~~~iig~~~~~~~l~~~~~~-----------~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~ 73 (355)
T TIGR02397 6 RKYRPQTFEDVIGQEHIVQTLKNAIKN-----------G-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNE 73 (355)
T ss_pred HHhCCCcHhhccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 567899999999999999988776631 1 2345899999999999999999999873
Q ss_pred ------------CcEEEEecCccCChhHHHHHHhhCC------CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHH
Q 041382 245 ------------YDIYNLNLSVVTSDSSLEYLLLHVP------NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVT 306 (600)
Q Consensus 245 ------------~~~~~l~~~~~~~~~~l~~~~~~~~------~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ 306 (600)
.+++.++.....+...++.++..+. .+-|++|||+|.+.. ..
T Consensus 74 c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~--------------------~~ 133 (355)
T TIGR02397 74 CESCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK--------------------SA 133 (355)
T ss_pred CHHHHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH--------------------HH
Confidence 2345555443333345566655442 345999999997732 24
Q ss_pred HHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCC
Q 041382 307 LAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIND 373 (600)
Q Consensus 307 ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~ 373 (600)
.+.|+..++.. +...++|++||+++.+.+++.+ |+ ..+++++|+.++...++..++...+
T Consensus 134 ~~~Ll~~le~~----~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g 193 (355)
T TIGR02397 134 FNALLKTLEEP----PEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEG 193 (355)
T ss_pred HHHHHHHHhCC----ccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 56788887653 2457788888999999999998 87 5899999999999998888776433
No 83
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=2.2e-13 Score=155.50 Aligned_cols=156 Identities=19% Similarity=0.264 Sum_probs=115.5
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCc----------
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYD---------- 246 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~---------- 246 (600)
...+|.+|++|+|++.+++.|...+.. ...+..|||+||||||||++|+++|+.++..
T Consensus 8 eKyRP~tFddIIGQe~Iv~~LknaI~~------------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~ 75 (944)
T PRK14949 8 RKWRPATFEQMVGQSHVLHALTNALTQ------------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGV 75 (944)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHh------------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCC
Confidence 345699999999999999887665531 1235578999999999999999999998643
Q ss_pred --------------EEEEecCccCChhHHHHHHhhCC------CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHH
Q 041382 247 --------------IYNLNLSVVTSDSSLEYLLLHVP------NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVT 306 (600)
Q Consensus 247 --------------~~~l~~~~~~~~~~l~~~~~~~~------~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ 306 (600)
++.++..+-.+...++.+..... ...|+||||+|.+-. ..
T Consensus 76 C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~--------------------eA 135 (944)
T PRK14949 76 CSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSR--------------------SS 135 (944)
T ss_pred chHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCH--------------------HH
Confidence 23333332223345565554332 346999999998832 36
Q ss_pred HHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCc
Q 041382 307 LAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDI 371 (600)
Q Consensus 307 ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~ 371 (600)
.+.||..|+.. ...+++|++|+.+..|.+.+++ |+ ..+.|..++.++....++..+..
T Consensus 136 qNALLKtLEEP----P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~ 193 (944)
T PRK14949 136 FNALLKTLEEP----PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQ 193 (944)
T ss_pred HHHHHHHHhcc----CCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHH
Confidence 77888888864 2447777788888999999999 88 78999999999988888876654
No 84
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=2.4e-13 Score=152.44 Aligned_cols=157 Identities=18% Similarity=0.286 Sum_probs=120.7
Q ss_pred CCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcC-------------
Q 041382 178 LDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMN------------- 244 (600)
Q Consensus 178 ~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~------------- 244 (600)
...|.+|++++|++.+++.+...+.. ...++.||||||+|||||++|+.+|+.++
T Consensus 9 k~rP~~f~~viGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C 76 (559)
T PRK05563 9 KWRPQTFEDVVGQEHITKTLKNAIKQ------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNEC 76 (559)
T ss_pred HhCCCcHHhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 45699999999999998888776642 12356899999999999999999999874
Q ss_pred -----------CcEEEEecCccCChhHHHHHHhhCC------CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHH
Q 041382 245 -----------YDIYNLNLSVVTSDSSLEYLLLHVP------NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTL 307 (600)
Q Consensus 245 -----------~~~~~l~~~~~~~~~~l~~~~~~~~------~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~l 307 (600)
.+++.++..+-.+...++.+..... ..-|++|||+|.+.. ...
T Consensus 77 ~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~--------------------~a~ 136 (559)
T PRK05563 77 EICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST--------------------GAF 136 (559)
T ss_pred HHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH--------------------HHH
Confidence 3567777655445566776665542 346999999998732 256
Q ss_pred HHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCC
Q 041382 308 AGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIND 373 (600)
Q Consensus 308 s~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~ 373 (600)
+.||..++.. +..+++|++|+.++.+++++++ |+ ..+.|+.|+.++....++..+...+
T Consensus 137 naLLKtLEep----p~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~eg 195 (559)
T PRK05563 137 NALLKTLEEP----PAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDKEG 195 (559)
T ss_pred HHHHHHhcCC----CCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHHcC
Confidence 7788888754 2457888888889999999998 88 5789999999998888887665443
No 85
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=1.8e-13 Score=151.81 Aligned_cols=156 Identities=16% Similarity=0.289 Sum_probs=116.7
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcC------------
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMN------------ 244 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~------------ 244 (600)
...+|.+|++++|++.+++.+...+.. | ..++++||+||||||||++|+++|+.+.
T Consensus 8 ~KyRP~~F~dIIGQe~iv~~L~~aI~~-----------~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~ 75 (605)
T PRK05896 8 RKYRPHNFKQIIGQELIKKILVNAILN-----------N-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNS 75 (605)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 567899999999999998877765521 1 2346899999999999999999999874
Q ss_pred ------------CcEEEEecCccCChhHHHHHHhhCC------CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHH
Q 041382 245 ------------YDIYNLNLSVVTSDSSLEYLLLHVP------NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVT 306 (600)
Q Consensus 245 ------------~~~~~l~~~~~~~~~~l~~~~~~~~------~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ 306 (600)
.+++.++.....+...++.+..... ..-|++|||+|.+-. ..
T Consensus 76 C~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~--------------------~A 135 (605)
T PRK05896 76 CSVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST--------------------SA 135 (605)
T ss_pred cHHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH--------------------HH
Confidence 2455566544334455666654332 345999999998732 13
Q ss_pred HHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCc
Q 041382 307 LAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDI 371 (600)
Q Consensus 307 ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~ 371 (600)
.+.||..|+.. +...++|++|+.+..|.+++++ |+ ..++|+.++.++....+...+..
T Consensus 136 ~NaLLKtLEEP----p~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il~k 193 (605)
T PRK05896 136 WNALLKTLEEP----PKHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIAKK 193 (605)
T ss_pred HHHHHHHHHhC----CCcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHHHH
Confidence 46788888754 2457888888889999999999 88 48999999999988777776543
No 86
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.52 E-value=2.9e-13 Score=131.68 Aligned_cols=174 Identities=21% Similarity=0.286 Sum_probs=143.7
Q ss_pred cccCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEe
Q 041382 175 GVNLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLN 251 (600)
Q Consensus 175 ~v~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~ 251 (600)
+++..+|+.+.+|+|.+.+|+.+.+....|..+ . +-..+||+|..||||||+++|+-+++ +..++.|+
T Consensus 50 pv~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G--------~-pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~ 120 (287)
T COG2607 50 PVPDPDPIDLADLVGVDRQKEALVRNTEQFAEG--------L-PANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVD 120 (287)
T ss_pred CCCCCCCcCHHHHhCchHHHHHHHHHHHHHHcC--------C-cccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEc
Confidence 577778899999999999999999999998874 2 34589999999999999999999887 67899999
Q ss_pred cCccCChhHHHHHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEec
Q 041382 252 LSVVTSDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTT 331 (600)
Q Consensus 252 ~~~~~~~~~l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TT 331 (600)
-.++.+-..+...+...+.+-|||+||+- + .........|-..|||-.+..+.+|+|.+|+
T Consensus 121 k~dl~~Lp~l~~~Lr~~~~kFIlFcDDLS--F-----------------e~gd~~yK~LKs~LeG~ve~rP~NVl~YATS 181 (287)
T COG2607 121 KEDLATLPDLVELLRARPEKFILFCDDLS--F-----------------EEGDDAYKALKSALEGGVEGRPANVLFYATS 181 (287)
T ss_pred HHHHhhHHHHHHHHhcCCceEEEEecCCC--C-----------------CCCchHHHHHHHHhcCCcccCCCeEEEEEec
Confidence 88888888889999999999999999982 1 1112345667788999888888999999999
Q ss_pred CCcCcCCHHHH--------------------hcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCcc
Q 041382 332 NYKDRIDPALL--------------------RAGRMDRHINLSYCTFSTFKQLAANYLDINDHDL 376 (600)
Q Consensus 332 N~~~~Ld~aLl--------------------rpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~ 376 (600)
|+...|+.... =..||+..+.|++|+.++..+|+..|........
T Consensus 182 NRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 182 NRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred CCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence 98776653322 1349999999999999999999999987655444
No 87
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.52 E-value=1.3e-13 Score=159.66 Aligned_cols=160 Identities=24% Similarity=0.253 Sum_probs=116.9
Q ss_pred ccc-cccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCChhHH-
Q 041382 184 FGT-LVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSL- 261 (600)
Q Consensus 184 f~~-l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~~~~l- 261 (600)
++. +.|.+++|++|++.+..... .+...+..++|+||||||||++++++|+.++.+++.++++...+...+
T Consensus 320 l~~~~~g~~~vK~~i~~~l~~~~~-------~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~ 392 (784)
T PRK10787 320 LDTDHYGLERVKDRILEYLAVQSR-------VNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIR 392 (784)
T ss_pred hhhhccCHHHHHHHHHHHHHHHHh-------cccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhc
Confidence 454 89999999999988864432 122233468999999999999999999999999999998876544333
Q ss_pred --------------HHHHhhCC-CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCc----cc---
Q 041382 262 --------------EYLLLHVP-NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGL----LC--- 319 (600)
Q Consensus 262 --------------~~~~~~~~-~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~----~~--- 319 (600)
...+..+. ...||+|||||.+.. +.. + ...+.|+..+|.- +.
T Consensus 393 g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~--~~~-----------g---~~~~aLlevld~~~~~~~~d~~ 456 (784)
T PRK10787 393 GHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSS--DMR-----------G---DPASALLEVLDPEQNVAFSDHY 456 (784)
T ss_pred cchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhccc--ccC-----------C---CHHHHHHHHhccccEEEEeccc
Confidence 22233332 455899999998853 110 0 1345677777631 00
Q ss_pred ----cCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcC
Q 041382 320 ----CCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLD 370 (600)
Q Consensus 320 ----~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~ 370 (600)
..-.++++|+|+|.. .|+|+|++ ||. .|.++.++.++..+|++.|+.
T Consensus 457 ~~~~~dls~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 457 LEVDYDLSDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred ccccccCCceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhh
Confidence 011458999999987 49999999 995 799999999999999999984
No 88
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=1.9e-13 Score=153.11 Aligned_cols=158 Identities=19% Similarity=0.291 Sum_probs=120.4
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC-----------
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY----------- 245 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~----------- 245 (600)
...+|.+|++|+|++.+++.|...+.. ...+++|||+||||||||++|+++|+.++.
T Consensus 8 rKYRP~tFddIIGQe~vv~~L~~ai~~------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~ 75 (709)
T PRK08691 8 RKWRPKTFADLVGQEHVVKALQNALDE------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGV 75 (709)
T ss_pred HHhCCCCHHHHcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcc
Confidence 456799999999999999888776642 133568999999999999999999998743
Q ss_pred -------------cEEEEecCccCChhHHHHHHhhC------CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHH
Q 041382 246 -------------DIYNLNLSVVTSDSSLEYLLLHV------PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVT 306 (600)
Q Consensus 246 -------------~~~~l~~~~~~~~~~l~~~~~~~------~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ 306 (600)
+++.++...-.+...++.++... ....|+||||+|.+-. ..
T Consensus 76 C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~--------------------~A 135 (709)
T PRK08691 76 CQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK--------------------SA 135 (709)
T ss_pred cHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH--------------------HH
Confidence 34455544444556677776543 2456999999997621 34
Q ss_pred HHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCC
Q 041382 307 LAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIND 373 (600)
Q Consensus 307 ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~ 373 (600)
.+.||..|+... +.+.+|++||.+..+.+.+++ |+ ..+.|+.++.++....+...+...+
T Consensus 136 ~NALLKtLEEPp----~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEg 195 (709)
T PRK08691 136 FNAMLKTLEEPP----EHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEK 195 (709)
T ss_pred HHHHHHHHHhCC----CCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcC
Confidence 677888887542 347788889999999999997 88 6889999999998888887776543
No 89
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=3.7e-13 Score=148.82 Aligned_cols=157 Identities=20% Similarity=0.341 Sum_probs=117.5
Q ss_pred CCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC------------
Q 041382 178 LDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY------------ 245 (600)
Q Consensus 178 ~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~------------ 245 (600)
...|.+|++|+|++.+++.|...+.. ...+..+|||||||||||++|+++|+.+..
T Consensus 7 KyRP~~~~dvvGq~~v~~~L~~~i~~------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~ 74 (504)
T PRK14963 7 RARPITFDEVVGQEHVKEVLLAALRQ------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECE 74 (504)
T ss_pred hhCCCCHHHhcChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcCh
Confidence 56799999999999998888776642 123457899999999999999999998842
Q ss_pred -----------cEEEEecCccCChhHHHHHHhhC------CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHH
Q 041382 246 -----------DIYNLNLSVVTSDSSLEYLLLHV------PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLA 308 (600)
Q Consensus 246 -----------~~~~l~~~~~~~~~~l~~~~~~~------~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls 308 (600)
+++.++...-.+...++.+.... ..+.|+||||+|.+. ...++
T Consensus 75 sc~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls--------------------~~a~n 134 (504)
T PRK14963 75 SCLAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS--------------------KSAFN 134 (504)
T ss_pred hhHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccC--------------------HHHHH
Confidence 25666655433444555543332 246799999998662 13567
Q ss_pred HHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCC
Q 041382 309 GLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIND 373 (600)
Q Consensus 309 ~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~ 373 (600)
.|+..|+.. ....++|++||.+..+.+++.+ |+ ..++|+.++.++....++..+...+
T Consensus 135 aLLk~LEep----~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~eg 192 (504)
T PRK14963 135 ALLKTLEEP----PEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEG 192 (504)
T ss_pred HHHHHHHhC----CCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcC
Confidence 788888754 2347888888999999999998 87 4899999999998888887765443
No 90
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=2.8e-13 Score=151.96 Aligned_cols=157 Identities=17% Similarity=0.258 Sum_probs=118.1
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC-----------
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY----------- 245 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~----------- 245 (600)
...+|.+|++++|++.+++.|...+.. ...+..||||||+|||||++++++|+.++.
T Consensus 8 ~KyRP~~f~dviGQe~vv~~L~~~l~~------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~ 75 (618)
T PRK14951 8 RKYRPRSFSEMVGQEHVVQALTNALTQ------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA 75 (618)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC
Confidence 456799999999999988877766532 123458999999999999999999998853
Q ss_pred ------------------cEEEEecCccCChhHHHHHHhhCC------CcceeeecchhhhhhhhccccCCCCCCCCCCC
Q 041382 246 ------------------DIYNLNLSVVTSDSSLEYLLLHVP------NRSILVVEDIDCSIKLQNRESQKGDEPADSYR 301 (600)
Q Consensus 246 ------------------~~~~l~~~~~~~~~~l~~~~~~~~------~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~ 301 (600)
+++.++..+-.+...++.++.... ..-|++|||+|.+..
T Consensus 76 ~pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~----------------- 138 (618)
T PRK14951 76 TPCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN----------------- 138 (618)
T ss_pred CCCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH-----------------
Confidence 355555544344556777765532 235999999998832
Q ss_pred ChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcC
Q 041382 302 GPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIN 372 (600)
Q Consensus 302 ~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~ 372 (600)
...+.||..|+.. ...+++|++|+.+..+.+.+++ |+ ..++|..++.++....++..+...
T Consensus 139 ---~a~NaLLKtLEEP----P~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~e 199 (618)
T PRK14951 139 ---TAFNAMLKTLEEP----PEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAE 199 (618)
T ss_pred ---HHHHHHHHhcccC----CCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHc
Confidence 3467788877753 2457788888889999999999 88 799999999998888887766443
No 91
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=2.8e-13 Score=153.12 Aligned_cols=157 Identities=21% Similarity=0.326 Sum_probs=117.6
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC-----------
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY----------- 245 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~----------- 245 (600)
...+|.+|++|+|++.+++.+...+.. ...+++||||||||||||++|+++|+.+..
T Consensus 10 ~KyRP~~f~dIiGQe~~v~~L~~aI~~------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~ 77 (725)
T PRK07133 10 RKYRPKTFDDIVGQDHIVQTLKNIIKS------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQ 77 (725)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchh
Confidence 567899999999999998888776642 124568999999999999999999998743
Q ss_pred ----------cEEEEecCccCChhHHHHHHhhCC------CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHH
Q 041382 246 ----------DIYNLNLSVVTSDSSLEYLLLHVP------NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAG 309 (600)
Q Consensus 246 ----------~~~~l~~~~~~~~~~l~~~~~~~~------~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~ 309 (600)
+++.++...-.+...++.+..... ...|++|||+|.+-. ...+.
T Consensus 78 ~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~--------------------~A~NA 137 (725)
T PRK07133 78 ECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK--------------------SAFNA 137 (725)
T ss_pred HHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH--------------------HHHHH
Confidence 223333322223445666655442 456999999998732 25677
Q ss_pred HHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcC
Q 041382 310 LLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIN 372 (600)
Q Consensus 310 lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~ 372 (600)
||..|+.. +..+++|++|+.++.|++++++ |+ ..+.|.+++.++....+...+...
T Consensus 138 LLKtLEEP----P~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~ke 193 (725)
T PRK07133 138 LLKTLEEP----PKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKE 193 (725)
T ss_pred HHHHhhcC----CCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHc
Confidence 88888864 2457888888899999999999 88 589999999999888887765543
No 92
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.51 E-value=4.1e-13 Score=144.08 Aligned_cols=155 Identities=17% Similarity=0.243 Sum_probs=113.7
Q ss_pred CccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCc----------------
Q 041382 183 TFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYD---------------- 246 (600)
Q Consensus 183 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~---------------- 246 (600)
.|++|+|++.+++.+...+..... .+...+.+.+++|||+||||+|||++|+++|+.+...
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~---~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA---DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc---cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 589999999999999888864433 2344455567899999999999999999999976432
Q ss_pred -------EEEEecCc-cCChhHHHHHHhhCC------CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHH
Q 041382 247 -------IYNLNLSV-VTSDSSLEYLLLHVP------NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLN 312 (600)
Q Consensus 247 -------~~~l~~~~-~~~~~~l~~~~~~~~------~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~ 312 (600)
++.+.... ..+...++.++.... ...|+||||+|.+.. ...+.||.
T Consensus 80 ~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~--------------------~aanaLLk 139 (394)
T PRK07940 80 LAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE--------------------RAANALLK 139 (394)
T ss_pred hcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH--------------------HHHHHHHH
Confidence 23333221 123456777665542 345999999999843 23466888
Q ss_pred hhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHH
Q 041382 313 AIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAAN 367 (600)
Q Consensus 313 ~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~ 367 (600)
.|+.. ..+.++|++|++++.|+|++++ |+ ..|.|++|+.++..+.+..
T Consensus 140 ~LEep----~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~ 187 (394)
T PRK07940 140 AVEEP----PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVR 187 (394)
T ss_pred HhhcC----CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHH
Confidence 88754 2346677777779999999999 88 6999999999998777763
No 93
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=7.5e-13 Score=141.81 Aligned_cols=158 Identities=20% Similarity=0.344 Sum_probs=115.7
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC-----------
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY----------- 245 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~----------- 245 (600)
...+|.+|++++|++..++.+...+.. | ..++++|||||||+|||++++++|+.+..
T Consensus 9 ~k~rP~~~~~iig~~~~~~~l~~~i~~-----------~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~ 76 (367)
T PRK14970 9 RKYRPQTFDDVVGQSHITNTLLNAIEN-----------N-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFS 76 (367)
T ss_pred HHHCCCcHHhcCCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 567899999999999988877776632 1 23468999999999999999999998743
Q ss_pred -cEEEEecCccCChhHHHHHHhhC------CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCcc
Q 041382 246 -DIYNLNLSVVTSDSSLEYLLLHV------PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLL 318 (600)
Q Consensus 246 -~~~~l~~~~~~~~~~l~~~~~~~------~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~ 318 (600)
.++.++.....+...++.++..+ ..+.|++|||+|.+.. ..++.|+..++..
T Consensus 77 ~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~--------------------~~~~~ll~~le~~- 135 (367)
T PRK14970 77 FNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS--------------------AAFNAFLKTLEEP- 135 (367)
T ss_pred cceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH--------------------HHHHHHHHHHhCC-
Confidence 23444433333345666666543 2356999999997732 2456788777653
Q ss_pred ccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCC
Q 041382 319 CCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIND 373 (600)
Q Consensus 319 ~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~ 373 (600)
+...++|++|+.+..+.+++.+ |+ ..++++.|+.++...++...+...+
T Consensus 136 ---~~~~~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g 184 (367)
T PRK14970 136 ---PAHAIFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEG 184 (367)
T ss_pred ---CCceEEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcC
Confidence 2346777788888999999998 77 4799999999998888877665433
No 94
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=3.8e-13 Score=155.67 Aligned_cols=158 Identities=17% Similarity=0.270 Sum_probs=119.8
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcC------------
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMN------------ 244 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~------------ 244 (600)
...+|.+|++|+|++.+++.|...+.. | ..++.||||||+|||||++|+++|+.++
T Consensus 7 ~KyRP~~f~eiiGqe~v~~~L~~~i~~-----------~-ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~ 74 (824)
T PRK07764 7 RRYRPATFAEVIGQEHVTEPLSTALDS-----------G-RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGE 74 (824)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHh-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcc
Confidence 467899999999999998887776532 1 2345799999999999999999999885
Q ss_pred --------------CcEEEEecCccCChhHHHHHHhhC------CCcceeeecchhhhhhhhccccCCCCCCCCCCCChH
Q 041382 245 --------------YDIYNLNLSVVTSDSSLEYLLLHV------PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQ 304 (600)
Q Consensus 245 --------------~~~~~l~~~~~~~~~~l~~~~~~~------~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~ 304 (600)
.+++.++..+..+...++.+.... ...-|+||||+|.+-.
T Consensus 75 C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~-------------------- 134 (824)
T PRK07764 75 CDSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP-------------------- 134 (824)
T ss_pred cHHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH--------------------
Confidence 235556554434445566554332 2456999999999832
Q ss_pred HHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCC
Q 041382 305 VTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIND 373 (600)
Q Consensus 305 ~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~ 373 (600)
...+.||..|+... ..++||++|+.++.|.++|++ |+ .++.|..++.++...++..++..++
T Consensus 135 ~a~NaLLK~LEEpP----~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EG 196 (824)
T PRK07764 135 QGFNALLKIVEEPP----EHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEG 196 (824)
T ss_pred HHHHHHHHHHhCCC----CCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 35677888888653 457888888989999999999 87 6899999999998888887775543
No 95
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=4.9e-13 Score=149.50 Aligned_cols=158 Identities=22% Similarity=0.330 Sum_probs=119.0
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcC------------
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMN------------ 244 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~------------ 244 (600)
...+|.+|++|+|++.+++.|...+.. | ..+..||||||+|||||++|+++|+.++
T Consensus 5 ~kyRP~~f~eivGq~~i~~~L~~~i~~-----------~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~ 72 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSALDA-----------G-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGV 72 (584)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccc
Confidence 356799999999999998887776632 1 2345799999999999999999999875
Q ss_pred --------------CcEEEEecCccCChhHHHHHHhhC------CCcceeeecchhhhhhhhccccCCCCCCCCCCCChH
Q 041382 245 --------------YDIYNLNLSVVTSDSSLEYLLLHV------PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQ 304 (600)
Q Consensus 245 --------------~~~~~l~~~~~~~~~~l~~~~~~~------~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~ 304 (600)
.+++.++.+...+...++.+.... ...-|++|||+|.+-.
T Consensus 73 C~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~-------------------- 132 (584)
T PRK14952 73 CESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT-------------------- 132 (584)
T ss_pred cHHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH--------------------
Confidence 235556655444455566554333 2346999999998732
Q ss_pred HHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCC
Q 041382 305 VTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIND 373 (600)
Q Consensus 305 ~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~ 373 (600)
...+.||..|+.. ...+++|++|+.++.|.+++++ |+ .+++|..++.++..+.+..++...+
T Consensus 133 ~A~NALLK~LEEp----p~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~eg 194 (584)
T PRK14952 133 AGFNALLKIVEEP----PEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEG 194 (584)
T ss_pred HHHHHHHHHHhcC----CCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 2567788888864 2458888888989999999999 86 6899999999988888887766543
No 96
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=6.3e-13 Score=147.38 Aligned_cols=156 Identities=16% Similarity=0.255 Sum_probs=115.1
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC-----------
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY----------- 245 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~----------- 245 (600)
...+|.+|++++|++.+++.+...+.. | ..+.++||+||||||||++|+++|+.++.
T Consensus 8 ~KyRP~~f~diiGq~~~v~~L~~~i~~-----------~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~ 75 (546)
T PRK14957 8 RKYRPQSFAEVAGQQHALNSLVHALET-----------Q-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNK 75 (546)
T ss_pred HHHCcCcHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcc
Confidence 456799999999999999887765531 1 23457999999999999999999998753
Q ss_pred -------------cEEEEecCccCChhHHHHHHhhC------CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHH
Q 041382 246 -------------DIYNLNLSVVTSDSSLEYLLLHV------PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVT 306 (600)
Q Consensus 246 -------------~~~~l~~~~~~~~~~l~~~~~~~------~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ 306 (600)
+++.++...-.+...++.++... ...-|++|||+|.+-. ..
T Consensus 76 C~sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~--------------------~a 135 (546)
T PRK14957 76 CENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK--------------------QS 135 (546)
T ss_pred cHHHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH--------------------HH
Confidence 45556553333444555554433 2456999999998732 35
Q ss_pred HHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCc
Q 041382 307 LAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDI 371 (600)
Q Consensus 307 ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~ 371 (600)
.+.||..|+.. ++.+++|++|+.+..+.+++++ |+ ..++|..++.++....+...+..
T Consensus 136 ~naLLK~LEep----p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~ 193 (546)
T PRK14957 136 FNALLKTLEEP----PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAK 193 (546)
T ss_pred HHHHHHHHhcC----CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHH
Confidence 57788888864 2346777777778999999998 88 79999999999887777765543
No 97
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=3.1e-13 Score=150.58 Aligned_cols=156 Identities=18% Similarity=0.283 Sum_probs=117.5
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC-----------
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY----------- 245 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~----------- 245 (600)
...+|.+|++++|++.+++.+...+.. ...+.+|||+||||||||++|+++|+.++.
T Consensus 8 ~k~rP~~f~divGq~~v~~~L~~~i~~------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~ 75 (527)
T PRK14969 8 RKWRPKSFSELVGQEHVVRALTNALEQ------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGV 75 (527)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHc------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 345689999999999999887766542 123468999999999999999999998854
Q ss_pred -------------cEEEEecCccCChhHHHHHHhhCC------CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHH
Q 041382 246 -------------DIYNLNLSVVTSDSSLEYLLLHVP------NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVT 306 (600)
Q Consensus 246 -------------~~~~l~~~~~~~~~~l~~~~~~~~------~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ 306 (600)
+++.++.+.-.+...++.++.... ...|++|||+|.+-. ..
T Consensus 76 C~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~--------------------~a 135 (527)
T PRK14969 76 CSACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK--------------------SA 135 (527)
T ss_pred CHHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH--------------------HH
Confidence 355555543334556776665442 346999999998732 34
Q ss_pred HHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCc
Q 041382 307 LAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDI 371 (600)
Q Consensus 307 ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~ 371 (600)
.+.||..|+.. ++.+++|++|+.++.+.+.+++ |+ ..++|+.++.++....+...+..
T Consensus 136 ~naLLK~LEep----p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~ 193 (527)
T PRK14969 136 FNAMLKTLEEP----PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQ 193 (527)
T ss_pred HHHHHHHHhCC----CCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHH
Confidence 67788888764 2457788888888999989998 87 79999999999988777776643
No 98
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.49 E-value=4.1e-13 Score=149.93 Aligned_cols=186 Identities=18% Similarity=0.217 Sum_probs=122.1
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc----------CCc
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM----------NYD 246 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l----------~~~ 246 (600)
...+|.+|++++|.+...+.+...+. .+.+..+|||||||||||++|+++.+++ +.+
T Consensus 57 ~~~rp~~f~~iiGqs~~i~~l~~al~-------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~ 123 (531)
T TIGR02902 57 EKTRPKSFDEIIGQEEGIKALKAALC-------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAA 123 (531)
T ss_pred HhhCcCCHHHeeCcHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCC
Confidence 56789999999999988877764321 1224589999999999999999998753 367
Q ss_pred EEEEecCccC-ChhHHH-HHH--------------h------------hCCCcceeeecchhhhhhhhccccCCCCCCCC
Q 041382 247 IYNLNLSVVT-SDSSLE-YLL--------------L------------HVPNRSILVVEDIDCSIKLQNRESQKGDEPAD 298 (600)
Q Consensus 247 ~~~l~~~~~~-~~~~l~-~~~--------------~------------~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~ 298 (600)
++.+||+... ++..+. .++ . ......+|||||||.+-.
T Consensus 124 fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~-------------- 189 (531)
T TIGR02902 124 FVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHP-------------- 189 (531)
T ss_pred EEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCH--------------
Confidence 8999986421 111110 010 0 012357999999998843
Q ss_pred CCCChHHHHHHHHHhhcCc--------c-----------------ccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEe
Q 041382 299 SYRGPQVTLAGLLNAIDGL--------L-----------------CCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINL 353 (600)
Q Consensus 299 ~~~~~~~~ls~lL~~ldg~--------~-----------------~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~ 353 (600)
...+.||..|+.- . ..+.+-++|++|||.++.++|++++ |+ ..|.|
T Consensus 190 ------~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~-~~I~f 260 (531)
T TIGR02902 190 ------VQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RC-VEIFF 260 (531)
T ss_pred ------HHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hh-heeeC
Confidence 2334455444210 0 0011236667788899999999999 98 58999
Q ss_pred CCCCHHHHHHHHHHhcCcCCCccHHHHHHHhhhcCCCHHHHHHHH
Q 041382 354 SYCTFSTFKQLAANYLDINDHDLYCHIEKLMEKVKVSPAEVAGEL 398 (600)
Q Consensus 354 ~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~~~~~t~a~i~~~l 398 (600)
++++.+++.+|++..+........++.-.++.....+.+++.+.+
T Consensus 261 ~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~n~Rel~nll 305 (531)
T TIGR02902 261 RPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYASNGREAVNIV 305 (531)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhhhHHHHHHHH
Confidence 999999999999998876554433333333333333555555544
No 99
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=5.8e-13 Score=148.55 Aligned_cols=156 Identities=13% Similarity=0.213 Sum_probs=115.0
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC-----------
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY----------- 245 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~----------- 245 (600)
....|.+|++|+|++.+++.|...+.. | ..+..|||+||||||||++|+++|+.++.
T Consensus 8 ~KyRP~sf~dIiGQe~v~~~L~~ai~~-----------~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~ 75 (624)
T PRK14959 8 ARYRPQTFAEVAGQETVKAILSRAAQE-----------N-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNT 75 (624)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcc
Confidence 567899999999999988777765531 1 22358999999999999999999998864
Q ss_pred -------------cEEEEecCccCChhHHHHHHhhC------CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHH
Q 041382 246 -------------DIYNLNLSVVTSDSSLEYLLLHV------PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVT 306 (600)
Q Consensus 246 -------------~~~~l~~~~~~~~~~l~~~~~~~------~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ 306 (600)
+++.++...-.+...++.+.... ....|+||||+|.+-. ..
T Consensus 76 C~sC~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~--------------------~a 135 (624)
T PRK14959 76 CEQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR--------------------EA 135 (624)
T ss_pred cHHHHHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH--------------------HH
Confidence 25556543322334444433222 2456999999998832 24
Q ss_pred HHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCc
Q 041382 307 LAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDI 371 (600)
Q Consensus 307 ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~ 371 (600)
.+.||..|+... ..+++|++||.+..+.+.|++ |+ .+|+|+.++.++...++...+..
T Consensus 136 ~naLLk~LEEP~----~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~ 193 (624)
T PRK14959 136 FNALLKTLEEPP----ARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGR 193 (624)
T ss_pred HHHHHHHhhccC----CCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHH
Confidence 577888887532 347888999999999999998 88 58899999999988888765543
No 100
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=1.1e-12 Score=144.50 Aligned_cols=158 Identities=18% Similarity=0.274 Sum_probs=115.2
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC-----------
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY----------- 245 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~----------- 245 (600)
...+|.+|++++|++.+++.+...+.. ...++.||||||||+|||++|+++|..++.
T Consensus 8 ~kyRP~~f~diiGq~~i~~~L~~~i~~------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~ 75 (486)
T PRK14953 8 RKYRPKFFKEVIGQEIVVRILKNAVKL------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGK 75 (486)
T ss_pred HhhCCCcHHHccChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCc
Confidence 567899999999999999888776632 123457999999999999999999998752
Q ss_pred -------------cEEEEecCccCChhHHHHHHhhC------CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHH
Q 041382 246 -------------DIYNLNLSVVTSDSSLEYLLLHV------PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVT 306 (600)
Q Consensus 246 -------------~~~~l~~~~~~~~~~l~~~~~~~------~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ 306 (600)
+++.++.+.-.+...++.+.... ..+.|++|||+|.+.. ..
T Consensus 76 c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~--------------------~a 135 (486)
T PRK14953 76 CENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK--------------------EA 135 (486)
T ss_pred cHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH--------------------HH
Confidence 34445443323334455443332 2457999999997732 24
Q ss_pred HHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCC
Q 041382 307 LAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIND 373 (600)
Q Consensus 307 ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~ 373 (600)
.+.|+..++.. +...++|++|+.++.+++++.+ |+ ..+.|++++.++....+..++...+
T Consensus 136 ~naLLk~LEep----p~~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~eg 195 (486)
T PRK14953 136 FNALLKTLEEP----PPRTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNEEK 195 (486)
T ss_pred HHHHHHHHhcC----CCCeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 56678777754 2346777777788899999998 87 4899999999999988888766544
No 101
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.47 E-value=2.7e-13 Score=143.16 Aligned_cols=157 Identities=12% Similarity=0.205 Sum_probs=107.4
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcC-----CcEEEEe
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMN-----YDIYNLN 251 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~-----~~~~~l~ 251 (600)
....|.+|++++|.+.+++.+...+.. +. ..++|||||||||||++|+++|+++. .+++.++
T Consensus 7 ~ky~P~~~~~~~g~~~~~~~L~~~~~~-----------~~--~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~ 73 (337)
T PRK12402 7 EKYRPALLEDILGQDEVVERLSRAVDS-----------PN--LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN 73 (337)
T ss_pred HhhCCCcHHHhcCCHHHHHHHHHHHhC-----------CC--CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec
Confidence 677899999999999988887665531 11 12699999999999999999999884 3467777
Q ss_pred cCccCCh--------------------------hHHHHHHhhC-------CCcceeeecchhhhhhhhccccCCCCCCCC
Q 041382 252 LSVVTSD--------------------------SSLEYLLLHV-------PNRSILVVEDIDCSIKLQNRESQKGDEPAD 298 (600)
Q Consensus 252 ~~~~~~~--------------------------~~l~~~~~~~-------~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~ 298 (600)
+.++... ..++.+.... ..+.+|+|||+|.+.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~-------------- 139 (337)
T PRK12402 74 VADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE-------------- 139 (337)
T ss_pred hhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH--------------
Confidence 7654210 1122221111 2356999999997732
Q ss_pred CCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCC
Q 041382 299 SYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIND 373 (600)
Q Consensus 299 ~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~ 373 (600)
.....|+..++... ....+|+||+.+..+.++|.+ |+ ..+.+++|+.++...+++..+...+
T Consensus 140 ------~~~~~L~~~le~~~----~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~ 201 (337)
T PRK12402 140 ------DAQQALRRIMEQYS----RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEG 201 (337)
T ss_pred ------HHHHHHHHHHHhcc----CCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcC
Confidence 12234555555432 224466677777788888888 76 5799999999999988887765443
No 102
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=9.8e-13 Score=148.16 Aligned_cols=156 Identities=18% Similarity=0.293 Sum_probs=117.8
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC-----------
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY----------- 245 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~----------- 245 (600)
....|.+|++|+|++.+++.+...+.. | ..++.||||||||||||++|+++|+.++.
T Consensus 8 ~k~RP~~f~~iiGq~~v~~~L~~~i~~-----------~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~ 75 (576)
T PRK14965 8 RKYRPQTFSDLTGQEHVSRTLQNAIDT-----------G-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNV 75 (576)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCc
Confidence 345699999999999999888776642 1 24568999999999999999999999752
Q ss_pred -------------cEEEEecCccCChhHHHHHHhhCC------CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHH
Q 041382 246 -------------DIYNLNLSVVTSDSSLEYLLLHVP------NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVT 306 (600)
Q Consensus 246 -------------~~~~l~~~~~~~~~~l~~~~~~~~------~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ 306 (600)
+++.++..+-.+..+++.+..... ..-|++|||+|.+-. ..
T Consensus 76 c~~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~--------------------~a 135 (576)
T PRK14965 76 CPPCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST--------------------NA 135 (576)
T ss_pred cHHHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH--------------------HH
Confidence 255566544344456666655432 345999999998732 34
Q ss_pred HHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCc
Q 041382 307 LAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDI 371 (600)
Q Consensus 307 ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~ 371 (600)
.+.||..|+.. .+.+++|++|+.++.|.+.+++ |+ ..++|..++.++....+..++..
T Consensus 136 ~naLLk~LEep----p~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~ 193 (576)
T PRK14965 136 FNALLKTLEEP----PPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQ 193 (576)
T ss_pred HHHHHHHHHcC----CCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHH
Confidence 57788888864 2458888899999999999999 87 58999999998877777765544
No 103
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.46 E-value=1.2e-12 Score=130.26 Aligned_cols=160 Identities=15% Similarity=0.124 Sum_probs=101.5
Q ss_pred ccCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEec
Q 041382 176 VNLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNL 252 (600)
Q Consensus 176 v~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~ 252 (600)
.....+.+|++.+.. ..+.+++.+..+.. ...++.++|+||||||||++++++++++ +.+++.+++
T Consensus 6 ~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~---------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~ 74 (226)
T TIGR03420 6 VGLPDDPTFDNFYAG--GNAELLAALRQLAA---------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPL 74 (226)
T ss_pred CCCCCchhhcCcCcC--CcHHHHHHHHHHHh---------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeH
Confidence 445566789998732 22333333333322 1234689999999999999999999987 467888988
Q ss_pred CccCChhHHHHHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecC
Q 041382 253 SVVTSDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTN 332 (600)
Q Consensus 253 ~~~~~~~~l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN 332 (600)
..+... ....+.......+|+|||+|.+.. ... ....+...++...... ..+|+|++
T Consensus 75 ~~~~~~--~~~~~~~~~~~~lLvIDdi~~l~~---------------~~~---~~~~L~~~l~~~~~~~---~~iIits~ 131 (226)
T TIGR03420 75 AELAQA--DPEVLEGLEQADLVCLDDVEAIAG---------------QPE---WQEALFHLYNRVREAG---GRLLIAGR 131 (226)
T ss_pred HHHHHh--HHHHHhhcccCCEEEEeChhhhcC---------------ChH---HHHHHHHHHHHHHHcC---CeEEEECC
Confidence 776532 234444445567999999998732 000 1223444343322211 23445555
Q ss_pred -CcCcCC---HHHHhcCCc--ceEEEeCCCCHHHHHHHHHHhcCc
Q 041382 333 -YKDRID---PALLRAGRM--DRHINLSYCTFSTFKQLAANYLDI 371 (600)
Q Consensus 333 -~~~~Ld---~aLlrpgRf--d~~I~~~~p~~e~r~~il~~~l~~ 371 (600)
.+..++ +.|.+ |+ ..+|.+|+|+.+++..+++.+...
T Consensus 132 ~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~ 174 (226)
T TIGR03420 132 AAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAAR 174 (226)
T ss_pred CChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHH
Confidence 444432 78888 65 578999999999999999877653
No 104
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=2.1e-12 Score=141.39 Aligned_cols=156 Identities=18% Similarity=0.233 Sum_probs=114.4
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC-----------
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY----------- 245 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~----------- 245 (600)
....|.+|++++|++.+++.+...+.. ...+.++|||||||+|||++|+++|+.+..
T Consensus 9 ~kyRP~~~~diiGq~~~v~~L~~~i~~------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~ 76 (451)
T PRK06305 9 RKYRPQTFSEILGQDAVVAVLKNALRF------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCN 76 (451)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCc
Confidence 456799999999999998877766531 124568999999999999999999998742
Q ss_pred --------------cEEEEecCccCChhHHHHHHhhC------CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHH
Q 041382 246 --------------DIYNLNLSVVTSDSSLEYLLLHV------PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQV 305 (600)
Q Consensus 246 --------------~~~~l~~~~~~~~~~l~~~~~~~------~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~ 305 (600)
+++.++.....+...++.+.... ..+.|++|||+|.+-. .
T Consensus 77 ~c~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~--------------------~ 136 (451)
T PRK06305 77 QCASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK--------------------E 136 (451)
T ss_pred ccHHHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH--------------------H
Confidence 34455543333334444433222 3568999999998832 2
Q ss_pred HHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCc
Q 041382 306 TLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDI 371 (600)
Q Consensus 306 ~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~ 371 (600)
..+.|+..|+... +.+++|++||.+..|.+++.+ |+ ..++|+.++.++....+...+..
T Consensus 137 ~~n~LLk~lEep~----~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~ 195 (451)
T PRK06305 137 AFNSLLKTLEEPP----QHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQ 195 (451)
T ss_pred HHHHHHHHhhcCC----CCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHH
Confidence 3567888887642 347788888988999999999 88 58999999999988877766544
No 105
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.46 E-value=1.1e-12 Score=141.48 Aligned_cols=177 Identities=19% Similarity=0.212 Sum_probs=112.9
Q ss_pred Cccc-cccChhHHHHHHHHHHHHHhCHHHHHHh--CC-CCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCC-
Q 041382 183 TFGT-LVMDGDLKETVLNDLDCFRRGKEYYRKI--GK-VWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTS- 257 (600)
Q Consensus 183 ~f~~-l~g~~~~k~~i~~~l~~~l~~~~~y~~~--g~-~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~- 257 (600)
.++. |+|+++.|+.+...+....++-...... +. .++.++||+||||||||++|+++|..++.+++.++++.+..
T Consensus 68 ~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~ 147 (412)
T PRK05342 68 HLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEA 147 (412)
T ss_pred HHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccC
Confidence 3554 8999999999977665443321110000 11 23568999999999999999999999999999999887642
Q ss_pred -------hhHHHHHHhhC------CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccc-----
Q 041382 258 -------DSSLEYLLLHV------PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLC----- 319 (600)
Q Consensus 258 -------~~~l~~~~~~~------~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~----- 319 (600)
...+..++... ..++||||||||.+.. .+.+.+. ..+.....+.+.||..|||...
T Consensus 148 gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~--~~~~~~~----~~d~s~~~vQ~~LL~~Leg~~~~v~~~ 221 (412)
T PRK05342 148 GYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIAR--KSENPSI----TRDVSGEGVQQALLKILEGTVASVPPQ 221 (412)
T ss_pred CcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhcc--ccCCCCc----CCCcccHHHHHHHHHHHhcCeEEeCCC
Confidence 12233333322 3689999999999954 1111110 1111122466778888886421
Q ss_pred ----cCCCeeEEEEecCCcC----------------------------------------------------cCCHHHHh
Q 041382 320 ----CCGDEKITVFTTNYKD----------------------------------------------------RIDPALLR 343 (600)
Q Consensus 320 ----~~~~~~iiI~TTN~~~----------------------------------------------------~Ld~aLlr 343 (600)
....+.++|.|+|-.. .+.|+|+
T Consensus 222 gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl- 300 (412)
T PRK05342 222 GGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI- 300 (412)
T ss_pred CCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh-
Confidence 1112346666766400 0234444
Q ss_pred cCCcceEEEeCCCCHHHHHHHHHH
Q 041382 344 AGRMDRHINLSYCTFSTFKQLAAN 367 (600)
Q Consensus 344 pgRfd~~I~~~~p~~e~r~~il~~ 367 (600)
||+|..+.|.+.+.+....|+..
T Consensus 301 -gRld~iv~f~~L~~~~L~~Il~~ 323 (412)
T PRK05342 301 -GRLPVVATLEELDEEALVRILTE 323 (412)
T ss_pred -CCCCeeeecCCCCHHHHHHHHHH
Confidence 49999999999999999888874
No 106
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.45 E-value=1.2e-12 Score=150.47 Aligned_cols=159 Identities=17% Similarity=0.275 Sum_probs=114.2
Q ss_pred ccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCChhHHHHHH
Q 041382 186 TLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYLL 265 (600)
Q Consensus 186 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~~~~l~~~~ 265 (600)
.|+|+++.++.|.+.+.....+- ..- ..|...+||+||||||||.+|+++|..++.+++.++++.+........++
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl---~~~-~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~Li 534 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGL---GHE-HKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccc---cCC-CCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHc
Confidence 37899999999988875443210 000 12334699999999999999999999999999999998875332222222
Q ss_pred h---------------h---CCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcC-cccc-CC---
Q 041382 266 L---------------H---VPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDG-LLCC-CG--- 322 (600)
Q Consensus 266 ~---------------~---~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg-~~~~-~~--- 322 (600)
. . ....|||||||||.+-+ ...+.||..||. .... .+
T Consensus 535 G~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~--------------------~v~~~LLq~ld~G~ltd~~g~~v 594 (758)
T PRK11034 535 GAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP--------------------DVFNLLLQVMDNGTLTDNNGRKA 594 (758)
T ss_pred CCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH--------------------HHHHHHHHHHhcCeeecCCCcee
Confidence 1 1 12458999999998843 356778888873 2211 11
Q ss_pred --CeeEEEEecCCc-------------------------CcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcC
Q 041382 323 --DEKITVFTTNYK-------------------------DRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLD 370 (600)
Q Consensus 323 --~~~iiI~TTN~~-------------------------~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~ 370 (600)
.+.++|+|||.- ..+.|.|+. |+|..|.|++.+.+...+|+..++.
T Consensus 595 d~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 595 DFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred cCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 357899999921 235688888 9999999999999999999987774
No 107
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=1.9e-12 Score=145.51 Aligned_cols=158 Identities=15% Similarity=0.288 Sum_probs=118.1
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCc----------
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYD---------- 246 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~---------- 246 (600)
....|.+|++|+|++.+++.+...+.. | ..+.++|||||+|+|||++|+++|+.++..
T Consensus 16 ~KyRP~~f~dliGq~~~v~~L~~~~~~-----------g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~ 83 (598)
T PRK09111 16 RKYRPQTFDDLIGQEAMVRTLTNAFET-----------G-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI 83 (598)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc
Confidence 567899999999999999888776531 2 235689999999999999999999988532
Q ss_pred -------------------EEEEecCccCChhHHHHHHhhCC------CcceeeecchhhhhhhhccccCCCCCCCCCCC
Q 041382 247 -------------------IYNLNLSVVTSDSSLEYLLLHVP------NRSILVVEDIDCSIKLQNRESQKGDEPADSYR 301 (600)
Q Consensus 247 -------------------~~~l~~~~~~~~~~l~~~~~~~~------~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~ 301 (600)
++.++..+..+...++.++.... ..-|+||||+|.+-.
T Consensus 84 ~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~----------------- 146 (598)
T PRK09111 84 DLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST----------------- 146 (598)
T ss_pred ccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH-----------------
Confidence 33333333334456666655442 356999999998732
Q ss_pred ChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCC
Q 041382 302 GPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIND 373 (600)
Q Consensus 302 ~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~ 373 (600)
...+.||..|+... ..+++|++|+.++.+.+.+++ |+ ..++|..++.++....+...+....
T Consensus 147 ---~a~naLLKtLEePp----~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~keg 208 (598)
T PRK09111 147 ---AAFNALLKTLEEPP----PHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEG 208 (598)
T ss_pred ---HHHHHHHHHHHhCC----CCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcC
Confidence 34677888887542 347788888888889999998 87 6899999999998888887765443
No 108
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=2.8e-12 Score=143.48 Aligned_cols=155 Identities=17% Similarity=0.286 Sum_probs=115.2
Q ss_pred CCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC------------
Q 041382 178 LDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY------------ 245 (600)
Q Consensus 178 ~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~------------ 245 (600)
..+|.+|++++|++.+++.+...+.. | ..++.||||||||+|||++|+++|+.++.
T Consensus 9 kyRP~~f~diiGqe~iv~~L~~~i~~-----------~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C 76 (563)
T PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIES-----------N-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC 76 (563)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc
Confidence 45799999999999999988776642 1 23458999999999999999999998853
Q ss_pred ------------cEEEEecCccCChhHHHHHHhhC------CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHH
Q 041382 246 ------------DIYNLNLSVVTSDSSLEYLLLHV------PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTL 307 (600)
Q Consensus 246 ------------~~~~l~~~~~~~~~~l~~~~~~~------~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~l 307 (600)
+++.++...-.+-..++.+.... ...-|++|||+|.+-. ...
T Consensus 77 ~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~--------------------~a~ 136 (563)
T PRK06647 77 SSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN--------------------SAF 136 (563)
T ss_pred hHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH--------------------HHH
Confidence 34445433322334566555332 2456999999998732 356
Q ss_pred HHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCc
Q 041382 308 AGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDI 371 (600)
Q Consensus 308 s~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~ 371 (600)
+.||..++.. +..+++|++|+.+..|.++|.+ |+ ..++|..++.++...+++..+..
T Consensus 137 naLLK~LEep----p~~~vfI~~tte~~kL~~tI~S--Rc-~~~~f~~l~~~el~~~L~~i~~~ 193 (563)
T PRK06647 137 NALLKTIEEP----PPYIVFIFATTEVHKLPATIKS--RC-QHFNFRLLSLEKIYNMLKKVCLE 193 (563)
T ss_pred HHHHHhhccC----CCCEEEEEecCChHHhHHHHHH--hc-eEEEecCCCHHHHHHHHHHHHHH
Confidence 7788888753 3457888888888999999999 88 47999999999988888776644
No 109
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.43 E-value=2.3e-12 Score=131.69 Aligned_cols=128 Identities=26% Similarity=0.228 Sum_probs=92.5
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCChhHHH---------------------------------HHHh
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLE---------------------------------YLLL 266 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~~~~l~---------------------------------~~~~ 266 (600)
+.+||+||||||||++|+++|..+|.+++.++|..-.....+- .++.
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 4799999999999999999999999999999886533211111 0111
Q ss_pred hCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCcc-cc-----------CCCeeEEEEecCCc
Q 041382 267 HVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLL-CC-----------CGDEKITVFTTNYK 334 (600)
Q Consensus 267 ~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~-~~-----------~~~~~iiI~TTN~~ 334 (600)
....+.+|+|||||.+-+ .+.+.|+..|+.-. .- ...+..+|+|+|..
T Consensus 102 A~~~g~~lllDEi~r~~~--------------------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~ 161 (262)
T TIGR02640 102 AVREGFTLVYDEFTRSKP--------------------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPV 161 (262)
T ss_pred HHHcCCEEEEcchhhCCH--------------------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCc
Confidence 123567999999997632 34566676665321 00 01246789999965
Q ss_pred -----CcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcC
Q 041382 335 -----DRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLD 370 (600)
Q Consensus 335 -----~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~ 370 (600)
..++++|++ || ..+.+++|+.+.-.+|++...+
T Consensus 162 ~~~g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~ 199 (262)
T TIGR02640 162 EYAGVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTD 199 (262)
T ss_pred cccceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC
Confidence 356999999 99 7899999999999999997764
No 110
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=3.8e-12 Score=140.56 Aligned_cols=157 Identities=17% Similarity=0.238 Sum_probs=117.6
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcC------------
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMN------------ 244 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~------------ 244 (600)
...+|.+|++++|++.+++.+...+.. | ..++.||||||||+|||++|+++|+.+.
T Consensus 6 ~KyRP~~fdeiiGqe~v~~~L~~~I~~-----------g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~ 73 (535)
T PRK08451 6 LKYRPKHFDELIGQESVSKTLSLALDN-----------N-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDT 73 (535)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 456899999999999998888776631 1 2456899999999999999999999873
Q ss_pred ------------CcEEEEecCccCChhHHHHHHhhCC------CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHH
Q 041382 245 ------------YDIYNLNLSVVTSDSSLEYLLLHVP------NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVT 306 (600)
Q Consensus 245 ------------~~~~~l~~~~~~~~~~l~~~~~~~~------~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ 306 (600)
.+++.++..+-.+-..++.+..... ..-|++|||+|.+-. ..
T Consensus 74 C~~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~--------------------~A 133 (535)
T PRK08451 74 CIQCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK--------------------EA 133 (535)
T ss_pred cHHHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH--------------------HH
Confidence 2355555443334566777665421 245999999998732 35
Q ss_pred HHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcC
Q 041382 307 LAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIN 372 (600)
Q Consensus 307 ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~ 372 (600)
.+.||..|+... ....+|++|+.+..|.+++++ |+ .+++|.+++.++....+...+...
T Consensus 134 ~NALLK~LEEpp----~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~E 192 (535)
T PRK08451 134 FNALLKTLEEPP----SYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKE 192 (535)
T ss_pred HHHHHHHHhhcC----CceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHc
Confidence 677888888652 346777778888999999999 86 699999999988877777666543
No 111
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=2e-12 Score=139.77 Aligned_cols=156 Identities=17% Similarity=0.299 Sum_probs=112.1
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC-----------
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY----------- 245 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~----------- 245 (600)
....|.+|++++|++.+++.+...+.. | ..+.+||||||||+|||++|+++|+.+..
T Consensus 8 ~k~RP~~~~eiiGq~~~~~~L~~~~~~-----------~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~ 75 (397)
T PRK14955 8 RKYRPKKFADITAQEHITRTIQNSLRM-----------G-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQ 75 (397)
T ss_pred HhcCCCcHhhccChHHHHHHHHHHHHh-----------C-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccc
Confidence 356799999999999998877665531 1 23458999999999999999999998854
Q ss_pred ---------------------cEEEEecCccCChhHHHHHHhhC------CCcceeeecchhhhhhhhccccCCCCCCCC
Q 041382 246 ---------------------DIYNLNLSVVTSDSSLEYLLLHV------PNRSILVVEDIDCSIKLQNRESQKGDEPAD 298 (600)
Q Consensus 246 ---------------------~~~~l~~~~~~~~~~l~~~~~~~------~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~ 298 (600)
+++.++.....+...++.+.... ...-|+||||+|.+-.
T Consensus 76 ~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~-------------- 141 (397)
T PRK14955 76 EVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI-------------- 141 (397)
T ss_pred cCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH--------------
Confidence 23334433333345566554444 1346999999998732
Q ss_pred CCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCc
Q 041382 299 SYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDI 371 (600)
Q Consensus 299 ~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~ 371 (600)
...+.|+..++.. ....++|++|+.+..+-+++.+ |+ ..++|+.++.++....+...+..
T Consensus 142 ------~~~~~LLk~LEep----~~~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~~~ei~~~l~~~~~~ 201 (397)
T PRK14955 142 ------AAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLEEIQQQLQGICEA 201 (397)
T ss_pred ------HHHHHHHHHHhcC----CCCeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCCHHHHHHHHHHHHHH
Confidence 2456678777643 2346677777778899999998 77 48999999998887777766643
No 112
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.43 E-value=3.6e-12 Score=127.29 Aligned_cols=159 Identities=16% Similarity=0.172 Sum_probs=100.4
Q ss_pred cccCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEe
Q 041382 175 GVNLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLN 251 (600)
Q Consensus 175 ~v~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~ 251 (600)
..+...|.+||++++... +.+...+..+.. +....++++|+||||||||+|++++++++ +.+++.++
T Consensus 8 ~~~~~~~~~~d~f~~~~~--~~~~~~l~~~~~--------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~ 77 (227)
T PRK08903 8 DLGPPPPPTFDNFVAGEN--AELVARLRELAA--------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD 77 (227)
T ss_pred CCCCCChhhhcccccCCc--HHHHHHHHHHHh--------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 345667788999773321 122233322221 22345689999999999999999999975 66888888
Q ss_pred cCccCChhHHHHHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEec
Q 041382 252 LSVVTSDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTT 331 (600)
Q Consensus 252 ~~~~~~~~~l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TT 331 (600)
+..... .+.......+|+|||+|.+.+ ... ..|+..++..... ...++|+|+
T Consensus 78 ~~~~~~------~~~~~~~~~~liiDdi~~l~~-----------------~~~---~~L~~~~~~~~~~--~~~~vl~~~ 129 (227)
T PRK08903 78 AASPLL------AFDFDPEAELYAVDDVERLDD-----------------AQQ---IALFNLFNRVRAH--GQGALLVAG 129 (227)
T ss_pred hHHhHH------HHhhcccCCEEEEeChhhcCc-----------------hHH---HHHHHHHHHHHHc--CCcEEEEeC
Confidence 766432 123334577999999998621 112 2344444433222 223455555
Q ss_pred CCc---CcCCHHHHhcCCc--ceEEEeCCCCHHHHHHHHHHhcCcCC
Q 041382 332 NYK---DRIDPALLRAGRM--DRHINLSYCTFSTFKQLAANYLDIND 373 (600)
Q Consensus 332 N~~---~~Ld~aLlrpgRf--d~~I~~~~p~~e~r~~il~~~l~~~~ 373 (600)
+.+ ..+.+.|.+ || ...|++|+|+.+.+..++..+.....
T Consensus 130 ~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~ 174 (227)
T PRK08903 130 PAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERG 174 (227)
T ss_pred CCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcC
Confidence 532 235688887 76 57999999999988888886654433
No 113
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=4.7e-12 Score=142.56 Aligned_cols=154 Identities=16% Similarity=0.274 Sum_probs=112.6
Q ss_pred CCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC------------
Q 041382 178 LDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY------------ 245 (600)
Q Consensus 178 ~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~------------ 245 (600)
..+|.+|++++|++.+++.+...+.. ...+.+|||+||||||||++|+++|+.++.
T Consensus 9 kyRP~~f~eivGQe~i~~~L~~~i~~------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~ 76 (620)
T PRK14954 9 KYRPSKFADITAQEHITHTIQNSLRM------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQE 76 (620)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccc
Confidence 45799999999999998887665421 134568999999999999999999998854
Q ss_pred --------------------cEEEEecCccCChhHHHHHHhhC------CCcceeeecchhhhhhhhccccCCCCCCCCC
Q 041382 246 --------------------DIYNLNLSVVTSDSSLEYLLLHV------PNRSILVVEDIDCSIKLQNRESQKGDEPADS 299 (600)
Q Consensus 246 --------------------~~~~l~~~~~~~~~~l~~~~~~~------~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~ 299 (600)
+++.++.....+...++.+.... ...-|++|||+|.+-.
T Consensus 77 ~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~--------------- 141 (620)
T PRK14954 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST--------------- 141 (620)
T ss_pred cCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH---------------
Confidence 23334333333345666665444 2356999999998732
Q ss_pred CCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcC
Q 041382 300 YRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLD 370 (600)
Q Consensus 300 ~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~ 370 (600)
...+.||..|+... ...++|++|+.+..|.+++.+ |+ ..++|..++.++....+...+.
T Consensus 142 -----~a~naLLK~LEePp----~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~ 200 (620)
T PRK14954 142 -----AAFNAFLKTLEEPP----PHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICR 200 (620)
T ss_pred -----HHHHHHHHHHhCCC----CCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHH
Confidence 23567888887642 346777777888999999998 77 6899999999887777776554
No 114
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.42 E-value=3.5e-12 Score=136.30 Aligned_cols=158 Identities=16% Similarity=0.171 Sum_probs=109.3
Q ss_pred ccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcC---------CcEEEEecCc
Q 041382 184 FGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMN---------YDIYNLNLSV 254 (600)
Q Consensus 184 f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~---------~~~~~l~~~~ 254 (600)
.+.++|.++..+.|...+...+.+ ..+.++++|||||||||++++++++.+. ..++.++|..
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~---------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRG---------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 357899999999998888655432 1235799999999999999999998763 4677888865
Q ss_pred cCChhH--------------------------HHHHH---hhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHH
Q 041382 255 VTSDSS--------------------------LEYLL---LHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQV 305 (600)
Q Consensus 255 ~~~~~~--------------------------l~~~~---~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~ 305 (600)
..+... +..++ .....+.||+|||+|.+.+ . ...
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~--~---------------~~~ 147 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVG--D---------------DDD 147 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhcc--C---------------CcH
Confidence 443211 11111 1224578999999999852 0 011
Q ss_pred HHHHHHHhhcCccccCCCeeEEEEecCCcC---cCCHHHHhcCCcc-eEEEeCCCCHHHHHHHHHHhcC
Q 041382 306 TLAGLLNAIDGLLCCCGDEKITVFTTNYKD---RIDPALLRAGRMD-RHINLSYCTFSTFKQLAANYLD 370 (600)
Q Consensus 306 ~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~---~Ld~aLlrpgRfd-~~I~~~~p~~e~r~~il~~~l~ 370 (600)
.+..|+...+. ....+..+.+|+++|.++ .+++.+.+ ||. ..|+|++++.++..+|++..+.
T Consensus 148 ~L~~l~~~~~~-~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 148 LLYQLSRARSN-GDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred HHHhHhccccc-cCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 34444433211 112224588899998775 58889888 774 6799999999999999998774
No 115
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.42 E-value=9.9e-13 Score=150.58 Aligned_cols=154 Identities=22% Similarity=0.243 Sum_probs=106.4
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT 256 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~ 256 (600)
...+|.+|++++|++.+.... ..+...+.. + ...++|||||||||||++|+++|+.++.+++.+++...
T Consensus 20 ek~RP~tldd~vGQe~ii~~~-~~L~~~i~~-------~--~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~- 88 (725)
T PRK13341 20 DRLRPRTLEEFVGQDHILGEG-RLLRRAIKA-------D--RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA- 88 (725)
T ss_pred HhcCCCcHHHhcCcHHHhhhh-HHHHHHHhc-------C--CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-
Confidence 456799999999998876431 112222221 1 12378999999999999999999999999988887532
Q ss_pred ChhHHHHHHhh-------CCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEE
Q 041382 257 SDSSLEYLLLH-------VPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVF 329 (600)
Q Consensus 257 ~~~~l~~~~~~-------~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~ 329 (600)
+...++..+.. ...+.||||||||.+.. .....|+..++. ..+++|+
T Consensus 89 ~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~--------------------~qQdaLL~~lE~------g~IiLI~ 142 (725)
T PRK13341 89 GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK--------------------AQQDALLPWVEN------GTITLIG 142 (725)
T ss_pred hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH--------------------HHHHHHHHHhcC------ceEEEEE
Confidence 22233333222 23567999999998732 112345555543 2366666
Q ss_pred ec--CCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcC
Q 041382 330 TT--NYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLD 370 (600)
Q Consensus 330 TT--N~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~ 370 (600)
+| |....+++++++ |+ ..+.|++++.+++..+++.++.
T Consensus 143 aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 143 ATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred ecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHH
Confidence 54 344678999998 75 5799999999999999998775
No 116
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=3.7e-12 Score=144.01 Aligned_cols=156 Identities=19% Similarity=0.308 Sum_probs=116.0
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC-----------
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY----------- 245 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~----------- 245 (600)
....|.+|++++|++.+++.+...+.. | ....++|||||||||||++|+++|+.++.
T Consensus 8 ~kyRP~~f~~liGq~~i~~~L~~~l~~-----------~-rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~C 75 (620)
T PRK14948 8 HKYRPQRFDELVGQEAIATTLKNALIS-----------N-RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPC 75 (620)
T ss_pred HHhCCCcHhhccChHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCC
Confidence 566789999999999998888776642 1 12348999999999999999999998854
Q ss_pred ---------------cEEEEecCccCChhHHHHHHhhCC------CcceeeecchhhhhhhhccccCCCCCCCCCCCChH
Q 041382 246 ---------------DIYNLNLSVVTSDSSLEYLLLHVP------NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQ 304 (600)
Q Consensus 246 ---------------~~~~l~~~~~~~~~~l~~~~~~~~------~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~ 304 (600)
+++.++.....+...++.++..+. ..-|+||||+|.+-.
T Consensus 76 g~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~-------------------- 135 (620)
T PRK14948 76 GKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST-------------------- 135 (620)
T ss_pred cccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH--------------------
Confidence 344555443334566777765542 346999999998732
Q ss_pred HHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCc
Q 041382 305 VTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDI 371 (600)
Q Consensus 305 ~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~ 371 (600)
...+.||..|+.. ....++|++|++++.+.++|++ |+ ..++|+.++.++-...+......
T Consensus 136 ~a~naLLK~LEeP----p~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~k 195 (620)
T PRK14948 136 AAFNALLKTLEEP----PPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEK 195 (620)
T ss_pred HHHHHHHHHHhcC----CcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHH
Confidence 3567788888853 2457888888889999999998 88 67999999888766666655443
No 117
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=4.9e-12 Score=143.07 Aligned_cols=157 Identities=20% Similarity=0.327 Sum_probs=120.1
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcC------------
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMN------------ 244 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~------------ 244 (600)
....|.+|++|+|++.+++.+...+.. ...++.||||||+|+|||++|+++|+.+.
T Consensus 9 ~kyRP~~f~~viGq~~~~~~L~~~i~~------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg 76 (614)
T PRK14971 9 RKYRPSTFESVVGQEALTTTLKNAIAT------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACN 76 (614)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 567899999999999999888777641 12456899999999999999999999874
Q ss_pred -------------CcEEEEecCccCChhHHHHHHhhCC------CcceeeecchhhhhhhhccccCCCCCCCCCCCChHH
Q 041382 245 -------------YDIYNLNLSVVTSDSSLEYLLLHVP------NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQV 305 (600)
Q Consensus 245 -------------~~~~~l~~~~~~~~~~l~~~~~~~~------~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~ 305 (600)
.+++.++..+..+...++.++..+. ..-|++|||+|.+-. .
T Consensus 77 ~C~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~--------------------~ 136 (614)
T PRK14971 77 ECESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ--------------------A 136 (614)
T ss_pred cchHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH--------------------H
Confidence 4566676655445567777765543 245999999998732 3
Q ss_pred HHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcC
Q 041382 306 TLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIN 372 (600)
Q Consensus 306 ~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~ 372 (600)
..+.|+..|+... ...++|++|+.+..|-++|++ |+ ..++|+.++.++....+...+...
T Consensus 137 a~naLLK~LEepp----~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~e 196 (614)
T PRK14971 137 AFNAFLKTLEEPP----SYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKE 196 (614)
T ss_pred HHHHHHHHHhCCC----CCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHc
Confidence 4667888888642 346777888788899999999 87 579999999998887777665443
No 118
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.41 E-value=5.7e-12 Score=131.89 Aligned_cols=159 Identities=16% Similarity=0.209 Sum_probs=110.7
Q ss_pred ccccccccCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcC-----
Q 041382 170 RWSSSGVNLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMN----- 244 (600)
Q Consensus 170 ~w~~~~v~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~----- 244 (600)
.|. +...|.+|++++|.+++++.+...+.. |.. .++|||||||||||++++++++.+.
T Consensus 6 ~w~----~kyrP~~~~~~~g~~~~~~~l~~~i~~-----------~~~--~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~ 68 (319)
T PRK00440 6 IWV----EKYRPRTLDEIVGQEEIVERLKSYVKE-----------KNM--PHLLFAGPPGTGKTTAALALARELYGEDWR 68 (319)
T ss_pred ccc----hhhCCCcHHHhcCcHHHHHHHHHHHhC-----------CCC--CeEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence 576 788999999999999988887766531 111 2589999999999999999999873
Q ss_pred CcEEEEecCccCChhHHHHHH----hhC----CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcC
Q 041382 245 YDIYNLNLSVVTSDSSLEYLL----LHV----PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDG 316 (600)
Q Consensus 245 ~~~~~l~~~~~~~~~~l~~~~----~~~----~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg 316 (600)
.+++.++.++..+...++..+ ... ..+.+++|||+|.+.. .....|+..++.
T Consensus 69 ~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~--------------------~~~~~L~~~le~ 128 (319)
T PRK00440 69 ENFLELNASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS--------------------DAQQALRRTMEM 128 (319)
T ss_pred cceEEeccccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH--------------------HHHHHHHHHHhc
Confidence 345555544433222222221 111 2356999999998732 123446666654
Q ss_pred ccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcC
Q 041382 317 LLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIN 372 (600)
Q Consensus 317 ~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~ 372 (600)
.. ....+|+++|.+..+.+++.+ |+. .+++++++.++...+++.++...
T Consensus 129 ~~----~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~ 177 (319)
T PRK00440 129 YS----QNTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENE 177 (319)
T ss_pred CC----CCCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHc
Confidence 32 235677788888888888998 774 69999999999888888777543
No 119
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=6e-12 Score=142.38 Aligned_cols=156 Identities=17% Similarity=0.284 Sum_probs=114.1
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC-----------
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY----------- 245 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~----------- 245 (600)
....|.+|++|+|++.+++.+...+.. | ..+..||||||||+|||++++++|+.++.
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i~~-----------~-~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~ 75 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAIAE-----------G-RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCG 75 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHh-----------C-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 456799999999999999888766532 1 23457899999999999999999998742
Q ss_pred --------------cEEEEecCccCChhHHHHHHhhC------CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHH
Q 041382 246 --------------DIYNLNLSVVTSDSSLEYLLLHV------PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQV 305 (600)
Q Consensus 246 --------------~~~~l~~~~~~~~~~l~~~~~~~------~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~ 305 (600)
+++.++.+...+...++.+.... ...-|+||||+|.+.. .
T Consensus 76 ~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~--------------------~ 135 (585)
T PRK14950 76 TCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST--------------------A 135 (585)
T ss_pred cCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH--------------------H
Confidence 24445544334445566554332 2356999999998732 3
Q ss_pred HHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCc
Q 041382 306 TLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDI 371 (600)
Q Consensus 306 ~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~ 371 (600)
.++.||..|+... ...++|++|+..+.+.+.+.+ |+ ..++|+.++..+...++..++..
T Consensus 136 a~naLLk~LEepp----~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~ 194 (585)
T PRK14950 136 AFNALLKTLEEPP----PHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAA 194 (585)
T ss_pred HHHHHHHHHhcCC----CCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHH
Confidence 4677888887642 346777778888889999988 77 47899999999888877776544
No 120
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.40 E-value=2.7e-12 Score=139.28 Aligned_cols=191 Identities=17% Similarity=0.238 Sum_probs=113.8
Q ss_pred cCCCCCCccc-cccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc-----CCcEEEE
Q 041382 177 NLDHPMTFGT-LVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM-----NYDIYNL 250 (600)
Q Consensus 177 ~~~~p~~f~~-l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l-----~~~~~~l 250 (600)
.+.+..+||+ ++|.... . ....+..+...+ |.. ..+++||||||||||+|++|+|+++ +..++.+
T Consensus 102 ~l~~~~tfd~fi~g~~n~-~-a~~~~~~~~~~~------~~~-~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi 172 (405)
T TIGR00362 102 PLNPKYTFDNFVVGKSNR-L-AHAAALAVAENP------GKA-YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYV 172 (405)
T ss_pred CCCCCCcccccccCCcHH-H-HHHHHHHHHhCc------Ccc-CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 3556678999 4564432 1 222333232221 212 2468999999999999999999987 5678888
Q ss_pred ecCccCCh-------hHHHHHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCC
Q 041382 251 NLSVVTSD-------SSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGD 323 (600)
Q Consensus 251 ~~~~~~~~-------~~l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~ 323 (600)
++..+... ..+...........+|+|||||.+.+ . . .+...|+..++......
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~--~-------------~---~~~~~l~~~~n~~~~~~-- 232 (405)
T TIGR00362 173 SSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAG--K-------------E---RTQEEFFHTFNALHENG-- 232 (405)
T ss_pred EHHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcC--C-------------H---HHHHHHHHHHHHHHHCC--
Confidence 87654311 11112222234567999999998743 0 0 12233555554443321
Q ss_pred eeEEEEecCCcCc---CCHHHHhcCCcc--eEEEeCCCCHHHHHHHHHHhcCcCCCccHHH-HHHHhhhcCCCHHHHHHH
Q 041382 324 EKITVFTTNYKDR---IDPALLRAGRMD--RHINLSYCTFSTFKQLAANYLDINDHDLYCH-IEKLMEKVKVSPAEVAGE 397 (600)
Q Consensus 324 ~~iiI~TTN~~~~---Ld~aLlrpgRfd--~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~-i~~l~~~~~~t~a~i~~~ 397 (600)
..+||.+++.|.. +++.|.+ ||. ..+++++|+.++|..|++..+...+....++ +..++....-+.+++.+.
T Consensus 233 ~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~ 310 (405)
T TIGR00362 233 KQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGA 310 (405)
T ss_pred CCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHH
Confidence 2344444445544 5688888 885 5899999999999999998887654433333 333444444455554444
Q ss_pred H
Q 041382 398 L 398 (600)
Q Consensus 398 l 398 (600)
|
T Consensus 311 l 311 (405)
T TIGR00362 311 L 311 (405)
T ss_pred H
Confidence 3
No 121
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.40 E-value=3e-12 Score=137.53 Aligned_cols=225 Identities=18% Similarity=0.208 Sum_probs=132.0
Q ss_pred Cccc-cccChhHHHHHHHHHHHHHhCHHHHHHh----CCC-CCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC
Q 041382 183 TFGT-LVMDGDLKETVLNDLDCFRRGKEYYRKI----GKV-WKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT 256 (600)
Q Consensus 183 ~f~~-l~g~~~~k~~i~~~l~~~l~~~~~y~~~----g~~-~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~ 256 (600)
.++. |+|+++.++.+...+....++-...... +.. .+.++||+||||||||++|+++|..++.++..++++.+.
T Consensus 74 ~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~ 153 (413)
T TIGR00382 74 HLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLT 153 (413)
T ss_pred HhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcc
Confidence 3444 6999999998877764433321100000 111 135899999999999999999999999999998877653
Q ss_pred C--------hhHHHHHHhhC------CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCcccc--
Q 041382 257 S--------DSSLEYLLLHV------PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCC-- 320 (600)
Q Consensus 257 ~--------~~~l~~~~~~~------~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~-- 320 (600)
. ...+..++... ..++||||||||.+.. .+...+.. ..-......+.||..|+|....
T Consensus 154 ~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~--~~~~~s~~----~dvsg~~vq~~LL~iLeG~~~~v~ 227 (413)
T TIGR00382 154 EAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISR--KSENPSIT----RDVSGEGVQQALLKIIEGTVANVP 227 (413)
T ss_pred ccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhch--hhcccccc----ccccchhHHHHHHHHhhccceecc
Confidence 1 12233333322 3678999999999864 22111110 1111123566788888876421
Q ss_pred --C-----CCeeEEEEecCCc---------------------------C-----------------------cCCHHHHh
Q 041382 321 --C-----GDEKITVFTTNYK---------------------------D-----------------------RIDPALLR 343 (600)
Q Consensus 321 --~-----~~~~iiI~TTN~~---------------------------~-----------------------~Ld~aLlr 343 (600)
. -.+.++|+|+|-. + .+.|+|+
T Consensus 228 ~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl- 306 (413)
T TIGR00382 228 PQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI- 306 (413)
T ss_pred cCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh-
Confidence 1 1346888888850 0 0234444
Q ss_pred cCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhhh----cCCCHHHHHHHHHhcCCHHHHHHHHHHHHHhhh
Q 041382 344 AGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLMEK----VKVSPAEVAGELMKAKGSKTSLEDFITYLESKE 419 (600)
Q Consensus 344 pgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~~----~~~t~a~i~~~l~~~~~~~~al~~l~~~l~~~~ 419 (600)
||+|..+.|.+.+.+...+|+..-+. .+......++.. ..+|++-+....-...++....+.+...+++.-
T Consensus 307 -gRld~Iv~f~pL~~~~L~~Il~~~~n----~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l 381 (413)
T TIGR00382 307 -GRLPVIATLEKLDEEALIAILTKPKN----ALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLL 381 (413)
T ss_pred -CCCCeEeecCCCCHHHHHHHHHHHHH----HHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhh
Confidence 49999999999999998888875332 112222222211 135555444444333455555566666555443
No 122
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.40 E-value=2.8e-12 Score=140.98 Aligned_cols=193 Identities=18% Similarity=0.278 Sum_probs=115.3
Q ss_pred ccCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc-----CCcEEEE
Q 041382 176 VNLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM-----NYDIYNL 250 (600)
Q Consensus 176 v~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l-----~~~~~~l 250 (600)
..+.+..+|++.+..+.-.. ....+..+...+ |..+ ++++||||||||||+|++|+|+++ +..++.+
T Consensus 113 ~~l~~~~tfd~fv~g~~n~~-a~~~~~~~~~~~------~~~~-~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi 184 (450)
T PRK00149 113 SPLNPKYTFDNFVVGKSNRL-AHAAALAVAENP------GKAY-NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYV 184 (450)
T ss_pred cCCCCCCcccccccCCCcHH-HHHHHHHHHhCc------CccC-CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 34566678999543333222 222232222221 2222 469999999999999999999987 5568888
Q ss_pred ecCccCCh-------hHHHHHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCC
Q 041382 251 NLSVVTSD-------SSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGD 323 (600)
Q Consensus 251 ~~~~~~~~-------~~l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~ 323 (600)
++..+... .....+.....+..+|+|||||.+.+ + ..+...|+..++......
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~--~----------------~~~~~~l~~~~n~l~~~~-- 244 (450)
T PRK00149 185 TSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAG--K----------------ERTQEEFFHTFNALHEAG-- 244 (450)
T ss_pred EHHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcC--C----------------HHHHHHHHHHHHHHHHCC--
Confidence 87665321 11122333334678999999998843 1 012234555555443332
Q ss_pred eeEEEEecCCcCc---CCHHHHhcCCcc--eEEEeCCCCHHHHHHHHHHhcCcCCCccHHH-HHHHhhhcCCCHHHHHHH
Q 041382 324 EKITVFTTNYKDR---IDPALLRAGRMD--RHINLSYCTFSTFKQLAANYLDINDHDLYCH-IEKLMEKVKVSPAEVAGE 397 (600)
Q Consensus 324 ~~iiI~TTN~~~~---Ld~aLlrpgRfd--~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~-i~~l~~~~~~t~a~i~~~ 397 (600)
..++|.++..|.. +++.|.+ ||. ..+++++|+.++|..|++..+...+....++ ++.++....-+.+++.+.
T Consensus 245 ~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~ 322 (450)
T PRK00149 245 KQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGA 322 (450)
T ss_pred CcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHH
Confidence 2344444445554 6789998 885 6899999999999999998876543333322 333333334444444443
Q ss_pred H
Q 041382 398 L 398 (600)
Q Consensus 398 l 398 (600)
|
T Consensus 323 l 323 (450)
T PRK00149 323 L 323 (450)
T ss_pred H
Confidence 3
No 123
>PRK08727 hypothetical protein; Validated
Probab=99.39 E-value=5e-12 Score=126.96 Aligned_cols=160 Identities=19% Similarity=0.227 Sum_probs=104.0
Q ss_pred cccCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEe
Q 041382 175 GVNLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLN 251 (600)
Q Consensus 175 ~v~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~ 251 (600)
++......+||+.++.+.- ....+..... | .+...++||||+|||||+|+.|+|+++ +..+..++
T Consensus 9 ~~~~~~~~~f~~f~~~~~n---~~~~~~~~~~--------~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~ 76 (233)
T PRK08727 9 ALRYPSDQRFDSYIAAPDG---LLAQLQALAA--------G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP 76 (233)
T ss_pred cCCCCCcCChhhccCCcHH---HHHHHHHHHh--------c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4555666799998766542 1122211111 1 123459999999999999999998875 56667777
Q ss_pred cCccCChhHHHHHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEec
Q 041382 252 LSVVTSDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTT 331 (600)
Q Consensus 252 ~~~~~~~~~l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TT 331 (600)
+.... ..+...+....+..+|+|||+|.+.+ .......+-.++|.+. .. +.-+|+|+
T Consensus 77 ~~~~~--~~~~~~~~~l~~~dlLiIDDi~~l~~---------------~~~~~~~lf~l~n~~~---~~---~~~vI~ts 133 (233)
T PRK08727 77 LQAAA--GRLRDALEALEGRSLVALDGLESIAG---------------QREDEVALFDFHNRAR---AA---GITLLYTA 133 (233)
T ss_pred HHHhh--hhHHHHHHHHhcCCEEEEeCcccccC---------------ChHHHHHHHHHHHHHH---Hc---CCeEEEEC
Confidence 65533 23445666666778999999998742 0111223334444432 21 13355555
Q ss_pred C-CcCcC---CHHHHhcCCc--ceEEEeCCCCHHHHHHHHHHhcCc
Q 041382 332 N-YKDRI---DPALLRAGRM--DRHINLSYCTFSTFKQLAANYLDI 371 (600)
Q Consensus 332 N-~~~~L---d~aLlrpgRf--d~~I~~~~p~~e~r~~il~~~l~~ 371 (600)
| .|..+ +|+|.+ || ...+.+++|+.+++.++++.....
T Consensus 134 ~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~ 177 (233)
T PRK08727 134 RQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQR 177 (233)
T ss_pred CCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHH
Confidence 5 66665 799999 86 578999999999999999975543
No 124
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.37 E-value=1.1e-11 Score=143.76 Aligned_cols=154 Identities=16% Similarity=0.254 Sum_probs=111.1
Q ss_pred ccccChhHHHHHHHHHHHHHhCHHHHHHhCCC----CCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCChhH-
Q 041382 186 TLVMDGDLKETVLNDLDCFRRGKEYYRKIGKV----WKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSS- 260 (600)
Q Consensus 186 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~----~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~~~~- 260 (600)
.|+|+++.++.|...+... +.|.. |...+||+||||||||.+|+++|..++.+++.++++.+.....
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~ 526 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTV 526 (731)
T ss_pred ceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccH
Confidence 4688888888877766432 22332 2235899999999999999999999999999999887643211
Q ss_pred ------------------HHHHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccc--c
Q 041382 261 ------------------LEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLC--C 320 (600)
Q Consensus 261 ------------------l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~--~ 320 (600)
+...+. ....+||+|||||.+-+ ...+.|+..||.-.- .
T Consensus 527 ~~lig~~~gyvg~~~~~~l~~~~~-~~p~~VvllDEieka~~--------------------~~~~~Ll~~ld~g~~~d~ 585 (731)
T TIGR02639 527 SRLIGAPPGYVGFEQGGLLTEAVR-KHPHCVLLLDEIEKAHP--------------------DIYNILLQVMDYATLTDN 585 (731)
T ss_pred HHHhcCCCCCcccchhhHHHHHHH-hCCCeEEEEechhhcCH--------------------HHHHHHHHhhccCeeecC
Confidence 222222 23468999999997732 355677887764311 1
Q ss_pred C-----CCeeEEEEecCCc-------------------------CcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcC
Q 041382 321 C-----GDEKITVFTTNYK-------------------------DRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLD 370 (600)
Q Consensus 321 ~-----~~~~iiI~TTN~~-------------------------~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~ 370 (600)
. -.+.+||+|||.- ..+.|.|+. |||..|.|.+.+.++..+|++..+.
T Consensus 586 ~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~ 663 (731)
T TIGR02639 586 NGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVD 663 (731)
T ss_pred CCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 1 1357899999852 125778887 9999999999999999999998775
No 125
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.36 E-value=1.9e-11 Score=137.97 Aligned_cols=188 Identities=16% Similarity=0.179 Sum_probs=122.9
Q ss_pred cccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc----------CCcEEEEecCc
Q 041382 185 GTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM----------NYDIYNLNLSV 254 (600)
Q Consensus 185 ~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l----------~~~~~~l~~~~ 254 (600)
+.|.+.++..++|...|...+.. ..+...+++|||||||||++++.+.+++ ...++.++|..
T Consensus 755 D~LPhREeEIeeLasfL~paIkg--------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ--------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc--------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 56778888888888877665542 1222335699999999999999998876 25678899865
Q ss_pred cCCh-----------------------hHHHHHHhhC----CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHH
Q 041382 255 VTSD-----------------------SSLEYLLLHV----PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTL 307 (600)
Q Consensus 255 ~~~~-----------------------~~l~~~~~~~----~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~l 307 (600)
+.+. ..+..+|... ....||+|||||.|.. + .+..|
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~k---K--------------~QDVL 889 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLIT---K--------------TQKVL 889 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCc---c--------------HHHHH
Confidence 4321 2233444332 1356999999999963 0 12334
Q ss_pred HHHHHhhcCccccCCCeeEEEEecCC---cCcCCHHHHhcCCcce-EEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHH
Q 041382 308 AGLLNAIDGLLCCCGDEKITVFTTNY---KDRIDPALLRAGRMDR-HINLSYCTFSTFKQLAANYLDINDHDLYCHIEKL 383 (600)
Q Consensus 308 s~lL~~ldg~~~~~~~~~iiI~TTN~---~~~Ld~aLlrpgRfd~-~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l 383 (600)
-.|++... ..+..++||+++|. ++.|+|.+.+ ||.. .|.|++++.+++.+|++..+......
T Consensus 890 YnLFR~~~----~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gV-------- 955 (1164)
T PTZ00112 890 FTLFDWPT----KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEI-------- 955 (1164)
T ss_pred HHHHHHhh----ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCC--------
Confidence 44444322 12345888899985 6678899988 6643 48899999999999999877642111
Q ss_pred hhhcCCCHHHHHHHHH-----hcCCHHHHHHHHHHHHHh
Q 041382 384 MEKVKVSPAEVAGELM-----KAKGSKTSLEDFITYLES 417 (600)
Q Consensus 384 ~~~~~~t~a~i~~~l~-----~~~~~~~al~~l~~~l~~ 417 (600)
+++ ++.+.+. ..+|+..|++.+..+++.
T Consensus 956 -----LdD-dAIELIArkVAq~SGDARKALDILRrAgEi 988 (1164)
T PTZ00112 956 -----IDH-TAIQLCARKVANVSGDIRKALQICRKAFEN 988 (1164)
T ss_pred -----CCH-HHHHHHHHhhhhcCCHHHHHHHHHHHHHhh
Confidence 121 2222222 236788888888888763
No 126
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.36 E-value=2.3e-11 Score=122.27 Aligned_cols=161 Identities=17% Similarity=0.175 Sum_probs=96.5
Q ss_pred ccCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcC---CcEEEEec
Q 041382 176 VNLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMN---YDIYNLNL 252 (600)
Q Consensus 176 v~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~---~~~~~l~~ 252 (600)
+.+.+..+||+.+-... ......+...... +..+.++||||||||||+|++++|+++. ..+..+++
T Consensus 13 ~~~~~~~~fd~f~~~~n--~~a~~~l~~~~~~---------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~ 81 (235)
T PRK08084 13 LYLPDDETFASFYPGDN--DSLLAALQNALRQ---------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPL 81 (235)
T ss_pred CCCCCcCCccccccCcc--HHHHHHHHHHHhC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEH
Confidence 34556678999762211 1233333332211 1224799999999999999999999764 44566665
Q ss_pred CccCChhHHHHHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecC
Q 041382 253 SVVTSDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTN 332 (600)
Q Consensus 253 ~~~~~~~~l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN 332 (600)
..... ....++....+-.+|+|||++.+.+ .......+-.++|.+ ... +...+++.+++
T Consensus 82 ~~~~~--~~~~~~~~~~~~dlliiDdi~~~~~---------------~~~~~~~lf~l~n~~---~e~-g~~~li~ts~~ 140 (235)
T PRK08084 82 DKRAW--FVPEVLEGMEQLSLVCIDNIECIAG---------------DELWEMAIFDLYNRI---LES-GRTRLLITGDR 140 (235)
T ss_pred HHHhh--hhHHHHHHhhhCCEEEEeChhhhcC---------------CHHHHHHHHHHHHHH---HHc-CCCeEEEeCCC
Confidence 44321 1122222233346899999998742 011122333334333 222 11134544555
Q ss_pred CcCc---CCHHHHhcCCcc--eEEEeCCCCHHHHHHHHHHhcC
Q 041382 333 YKDR---IDPALLRAGRMD--RHINLSYCTFSTFKQLAANYLD 370 (600)
Q Consensus 333 ~~~~---Ld~aLlrpgRfd--~~I~~~~p~~e~r~~il~~~l~ 370 (600)
.|.. +.|.|.+ |+. ..+.+.+|+.+++.++++....
T Consensus 141 ~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~ 181 (235)
T PRK08084 141 PPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRAR 181 (235)
T ss_pred ChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHH
Confidence 6655 5799999 874 8999999999999999986443
No 127
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.36 E-value=1.3e-11 Score=129.60 Aligned_cols=157 Identities=19% Similarity=0.217 Sum_probs=105.0
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc-------CCcE--EE
Q 041382 179 DHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM-------NYDI--YN 249 (600)
Q Consensus 179 ~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l-------~~~~--~~ 249 (600)
..|.+|++++|++++++.+.-.+.. +...++||+||||||||++++++|+.+ +.++ ..
T Consensus 2 ~~~~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~ 68 (334)
T PRK13407 2 KKPFPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSAR 68 (334)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCc
Confidence 3577899999999998877643311 112489999999999999999999988 2211 11
Q ss_pred E------------------------ecC----ccCChhHHHHHHhhC-----------CCcceeeecchhhhhhhhcccc
Q 041382 250 L------------------------NLS----VVTSDSSLEYLLLHV-----------PNRSILVVEDIDCSIKLQNRES 290 (600)
Q Consensus 250 l------------------------~~~----~~~~~~~l~~~~~~~-----------~~~sIL~iDeiD~l~~~~~r~~ 290 (600)
+ ..+ .+.+...+...+... ....+||+|||+.+-+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~------ 142 (334)
T PRK13407 69 PEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLED------ 142 (334)
T ss_pred ccCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCH------
Confidence 0 000 011112222221111 2346999999998732
Q ss_pred CCCCCCCCCCCChHHHHHHHHHhhcCc---------cccCCCeeEEEEecCCcC-cCCHHHHhcCCcceEEEeCCCCH-H
Q 041382 291 QKGDEPADSYRGPQVTLAGLLNAIDGL---------LCCCGDEKITVFTTNYKD-RIDPALLRAGRMDRHINLSYCTF-S 359 (600)
Q Consensus 291 ~~~~~~~~~~~~~~~~ls~lL~~ldg~---------~~~~~~~~iiI~TTN~~~-~Ld~aLlrpgRfd~~I~~~~p~~-e 359 (600)
.+.+.|++.|+.- ....+..+++|+|+|..+ .++++|+. ||...|.+++|.. +
T Consensus 143 --------------~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~ 206 (334)
T PRK13407 143 --------------HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVE 206 (334)
T ss_pred --------------HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHH
Confidence 4566777777432 112233578888888544 68999999 9999999999987 8
Q ss_pred HHHHHHHHhcC
Q 041382 360 TFKQLAANYLD 370 (600)
Q Consensus 360 ~r~~il~~~l~ 370 (600)
+|.+++.....
T Consensus 207 e~~~il~~~~~ 217 (334)
T PRK13407 207 TRVEVIRRRDA 217 (334)
T ss_pred HHHHHHHHhhc
Confidence 89999987654
No 128
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.35 E-value=7.7e-12 Score=136.62 Aligned_cols=156 Identities=18% Similarity=0.326 Sum_probs=122.1
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCc------------
Q 041382 179 DHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYD------------ 246 (600)
Q Consensus 179 ~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~------------ 246 (600)
.+|.+|++++|++.+.+.|...+..-. -..+|||.||.||||||+|+.+|+.++..
T Consensus 10 yRP~~F~evvGQe~v~~~L~nal~~~r------------i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~ 77 (515)
T COG2812 10 YRPKTFDDVVGQEHVVKTLSNALENGR------------IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCI 77 (515)
T ss_pred hCcccHHHhcccHHHHHHHHHHHHhCc------------chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhh
Confidence 458999999999999998888775321 23599999999999999999999987542
Q ss_pred ------------EEEEecCccCChhHHHHHHhhCC------CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHH
Q 041382 247 ------------IYNLNLSVVTSDSSLEYLLLHVP------NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLA 308 (600)
Q Consensus 247 ------------~~~l~~~~~~~~~~l~~~~~~~~------~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls 308 (600)
++.+|..+-.+-.++|.+..+.. +.-|.+|||+|.+- ....+
T Consensus 78 ~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS--------------------~~afN 137 (515)
T COG2812 78 SCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS--------------------KQAFN 137 (515)
T ss_pred hhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh--------------------HHHHH
Confidence 23333333335577888877763 34599999999883 24677
Q ss_pred HHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCC
Q 041382 309 GLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIND 373 (600)
Q Consensus 309 ~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~ 373 (600)
.||..++. ++..+++|++|..++++++.+++ |+ .++.|...+.++....+..++..++
T Consensus 138 ALLKTLEE----PP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~ 195 (515)
T COG2812 138 ALLKTLEE----PPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEG 195 (515)
T ss_pred HHhccccc----CccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcC
Confidence 78877764 44679999999999999999999 88 6889999999998888888887654
No 129
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.33 E-value=1.3e-10 Score=125.49 Aligned_cols=158 Identities=19% Similarity=0.211 Sum_probs=108.8
Q ss_pred CccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc-----CCcEEEEecCccCC
Q 041382 183 TFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM-----NYDIYNLNLSVVTS 257 (600)
Q Consensus 183 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l-----~~~~~~l~~~~~~~ 257 (600)
..+.++|.++..+.|...+...+.+ ..+.++++|||||||||++++.+++.+ +..++.++|....+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~---------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRG---------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 4466888888888888877654432 123478999999999999999999987 56788888865432
Q ss_pred h-----------------------hHH-H---HHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHH
Q 041382 258 D-----------------------SSL-E---YLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGL 310 (600)
Q Consensus 258 ~-----------------------~~l-~---~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~l 310 (600)
. ..+ . ..+.....+.||+|||+|.+.. +. ....+..|
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~---~~-------------~~~~l~~l 162 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFE---KE-------------GNDVLYSL 162 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhc---cC-------------CchHHHHH
Confidence 1 111 1 1112223568999999999852 10 11245666
Q ss_pred HHhhcCccccCCCeeEEEEecCCc---CcCCHHHHhcCCcc-eEEEeCCCCHHHHHHHHHHhcC
Q 041382 311 LNAIDGLLCCCGDEKITVFTTNYK---DRIDPALLRAGRMD-RHINLSYCTFSTFKQLAANYLD 370 (600)
Q Consensus 311 L~~ldg~~~~~~~~~iiI~TTN~~---~~Ld~aLlrpgRfd-~~I~~~~p~~e~r~~il~~~l~ 370 (600)
+..++... +..+.+|+++|.. +.+++.+.+ ||. ..|+|++++.++..+|++..+.
T Consensus 163 ~~~~~~~~---~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~ 221 (394)
T PRK00411 163 LRAHEEYP---GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVE 221 (394)
T ss_pred HHhhhccC---CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHH
Confidence 66655432 2257788888865 457888887 663 6799999999999999997764
No 130
>PRK05642 DNA replication initiation factor; Validated
Probab=99.32 E-value=2.6e-11 Score=121.84 Aligned_cols=163 Identities=15% Similarity=0.135 Sum_probs=101.5
Q ss_pred cccCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEe
Q 041382 175 GVNLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLN 251 (600)
Q Consensus 175 ~v~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~ 251 (600)
++...+..+||+.+... .......+..+.... +....+.++||||+|||||+|++|+|+++ +..+++++
T Consensus 9 ~~~~~~~~tfdnF~~~~--~~~a~~~~~~~~~~~------~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~ 80 (234)
T PRK05642 9 GVRLRDDATFANYYPGA--NAAALGYVERLCEAD------AGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP 80 (234)
T ss_pred CCCCCCcccccccCcCC--hHHHHHHHHHHhhcc------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee
Confidence 45566667999976332 233444443332211 11112578999999999999999999865 56788888
Q ss_pred cCccCChhHHHHHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEec
Q 041382 252 LSVVTSDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTT 331 (600)
Q Consensus 252 ~~~~~~~~~l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TT 331 (600)
..++... ...++....+.-+|+|||++.+.+ ... .-..|++.++...... ..+++.++
T Consensus 81 ~~~~~~~--~~~~~~~~~~~d~LiiDDi~~~~~---------------~~~---~~~~Lf~l~n~~~~~g--~~ilits~ 138 (234)
T PRK05642 81 LAELLDR--GPELLDNLEQYELVCLDDLDVIAG---------------KAD---WEEALFHLFNRLRDSG--RRLLLAAS 138 (234)
T ss_pred HHHHHhh--hHHHHHhhhhCCEEEEechhhhcC---------------ChH---HHHHHHHHHHHHHhcC--CEEEEeCC
Confidence 7665432 122333333446899999997742 011 1233444444443322 24555555
Q ss_pred CCcCcC---CHHHHhcCCc--ceEEEeCCCCHHHHHHHHHHhc
Q 041382 332 NYKDRI---DPALLRAGRM--DRHINLSYCTFSTFKQLAANYL 369 (600)
Q Consensus 332 N~~~~L---d~aLlrpgRf--d~~I~~~~p~~e~r~~il~~~l 369 (600)
..|..+ .|.|.+ || ...+.+..|+.+.+..+++...
T Consensus 139 ~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 139 KSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred CCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 445433 699999 87 5788899999999999998544
No 131
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.31 E-value=2.4e-11 Score=110.49 Aligned_cols=116 Identities=28% Similarity=0.345 Sum_probs=82.2
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCChhHHHH-----------HHhhCCCcceeeecchhhhh
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTSDSSLEY-----------LLLHVPNRSILVVEDIDCSI 283 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~~~~l~~-----------~~~~~~~~sIL~iDeiD~l~ 283 (600)
..++++++||||||||++++.+++.+ +.+++.+++........... .......+.+|+|||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 34589999999999999999999998 89999999887654332221 22233468999999999762
Q ss_pred hhhccccCCCCCCCCCCCChHHHHHHHHHhhcCcccc--CCCeeEEEEecCCcC--cCCHHHHhcCCcceEEEeCC
Q 041382 284 KLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCC--CGDEKITVFTTNYKD--RIDPALLRAGRMDRHINLSY 355 (600)
Q Consensus 284 ~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~--~~~~~iiI~TTN~~~--~Ld~aLlrpgRfd~~I~~~~ 355 (600)
. .....++..+...... ...++.+|++||... .+++.+.+ ||+.+|.+++
T Consensus 98 ~--------------------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~~ 151 (151)
T cd00009 98 R--------------------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIPL 151 (151)
T ss_pred H--------------------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecCC
Confidence 1 1223444444443221 123478888888776 78889988 9998888863
No 132
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.31 E-value=1.4e-11 Score=134.59 Aligned_cols=191 Identities=17% Similarity=0.257 Sum_probs=110.4
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc-----CCcEEEEe
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM-----NYDIYNLN 251 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l-----~~~~~~l~ 251 (600)
++.+..|||+.+..+.-.. ....+..+..++ | +..+++||||||||||+|++|+|+++ +..+++++
T Consensus 97 ~l~~~~tFdnFv~g~~n~~-a~~~~~~~~~~~------~--~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~ 167 (440)
T PRK14088 97 PLNPDYTFENFVVGPGNSF-AYHAALEVAKNP------G--RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_pred CCCCCCcccccccCCchHH-HHHHHHHHHhCc------C--CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 4556678999763333222 222222222221 1 12469999999999999999999986 45678888
Q ss_pred cCccCCh-------hHHHHHHhhC-CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCC
Q 041382 252 LSVVTSD-------SSLEYLLLHV-PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGD 323 (600)
Q Consensus 252 ~~~~~~~-------~~l~~~~~~~-~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~ 323 (600)
+.++... ..+....... .++.+|+|||++.+.+ . . .+...|+..++.+....
T Consensus 168 ~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~--~-------------~---~~q~elf~~~n~l~~~~-- 227 (440)
T PRK14088 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIG--K-------------T---GVQTELFHTFNELHDSG-- 227 (440)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcC--c-------------H---HHHHHHHHHHHHHHHcC--
Confidence 7654311 1111222222 2578999999998753 0 0 01123444444443322
Q ss_pred eeEEEEecCCcCc---CCHHHHhcCCc--ceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHH-HHHhhhcCCCHHHHHHH
Q 041382 324 EKITVFTTNYKDR---IDPALLRAGRM--DRHINLSYCTFSTFKQLAANYLDINDHDLYCHI-EKLMEKVKVSPAEVAGE 397 (600)
Q Consensus 324 ~~iiI~TTN~~~~---Ld~aLlrpgRf--d~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i-~~l~~~~~~t~a~i~~~ 397 (600)
..+||.+.+.|.. +++.+.+ || +..+.+.+|+.+.|..|++......+..+.+++ ..++....-+.+++.+.
T Consensus 228 k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~ 305 (440)
T PRK14088 228 KQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_pred CeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHH
Confidence 2344444455555 4577887 66 568899999999999999988765443333333 33333333344444444
Q ss_pred H
Q 041382 398 L 398 (600)
Q Consensus 398 l 398 (600)
|
T Consensus 306 l 306 (440)
T PRK14088 306 I 306 (440)
T ss_pred H
Confidence 3
No 133
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.31 E-value=1.5e-11 Score=127.48 Aligned_cols=129 Identities=19% Similarity=0.182 Sum_probs=91.2
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCChhHHHH-------------H-----Hhh-CCCcceeeecch
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEY-------------L-----LLH-VPNRSILVVEDI 279 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~~~~l~~-------------~-----~~~-~~~~sIL~iDei 279 (600)
++.+||.||||||||++++.+|..++.+++.++++...+..++.. . +.. ...+++|++|||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEi 143 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDEY 143 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEechh
Confidence 468999999999999999999999999999998766542211110 0 111 135788999999
Q ss_pred hhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcC--ccc--------cCCCeeEEEEecCCcC------------cC
Q 041382 280 DCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDG--LLC--------CCGDEKITVFTTNYKD------------RI 337 (600)
Q Consensus 280 D~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg--~~~--------~~~~~~iiI~TTN~~~------------~L 337 (600)
|..-+ .+.+.|...++. ... .+...+.+|+|+|..+ .+
T Consensus 144 n~a~p--------------------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l 203 (327)
T TIGR01650 144 DAGRP--------------------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQI 203 (327)
T ss_pred hccCH--------------------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecC
Confidence 97622 233443333331 110 1123477899999765 46
Q ss_pred CHHHHhcCCcceEEEeCCCCHHHHHHHHHHhc
Q 041382 338 DPALLRAGRMDRHINLSYCTFSTFKQLAANYL 369 (600)
Q Consensus 338 d~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l 369 (600)
++|++. ||-..+.++||+.+.-.+|+....
T Consensus 204 ~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 204 NQAQMD--RWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred CHHHHh--heeeEeeCCCCCHHHHHHHHHhhc
Confidence 899999 998888999999999999987654
No 134
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.30 E-value=7.5e-11 Score=124.14 Aligned_cols=156 Identities=20% Similarity=0.241 Sum_probs=105.4
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC-------cEE----
Q 041382 180 HPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY-------DIY---- 248 (600)
Q Consensus 180 ~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~-------~~~---- 248 (600)
...+|.+|+|+++.|..+...+.. |...|+||.||+|||||++++++++.+.. +|.
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~~-------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVID-------------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhccC-------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 345899999999999998776543 22358999999999999999999887631 111
Q ss_pred -----------------------------EEecCc----cCChhHHHHHHhhC-----------CCcceeeecchhhhhh
Q 041382 249 -----------------------------NLNLSV----VTSDSSLEYLLLHV-----------PNRSILVVEDIDCSIK 284 (600)
Q Consensus 249 -----------------------------~l~~~~----~~~~~~l~~~~~~~-----------~~~sIL~iDeiD~l~~ 284 (600)
.+..+. +.+.-++...+... ....+|++|||+.+-+
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~ 158 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD 158 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH
Confidence 111110 01111223332222 2357999999998743
Q ss_pred hhccccCCCCCCCCCCCChHHHHHHHHHhhcC---------ccccCCCeeEEEEecCCcC-cCCHHHHhcCCcceEEEeC
Q 041382 285 LQNRESQKGDEPADSYRGPQVTLAGLLNAIDG---------LLCCCGDEKITVFTTNYKD-RIDPALLRAGRMDRHINLS 354 (600)
Q Consensus 285 ~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg---------~~~~~~~~~iiI~TTN~~~-~Ld~aLlrpgRfd~~I~~~ 354 (600)
.+.+.|+..|+. .....+..+++|+|.|..+ .++++|+. ||..+|.+.
T Consensus 159 --------------------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~ 216 (350)
T CHL00081 159 --------------------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIR 216 (350)
T ss_pred --------------------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecC
Confidence 345567777642 2212223467777777544 69999999 999999999
Q ss_pred CCC-HHHHHHHHHHhcC
Q 041382 355 YCT-FSTFKQLAANYLD 370 (600)
Q Consensus 355 ~p~-~e~r~~il~~~l~ 370 (600)
+|+ .+.+.+|++....
T Consensus 217 ~~~~~~~e~~il~~~~~ 233 (350)
T CHL00081 217 TVKDPELRVKIVEQRTS 233 (350)
T ss_pred CCCChHHHHHHHHhhhc
Confidence 998 5999999987654
No 135
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.29 E-value=5.8e-11 Score=134.74 Aligned_cols=159 Identities=17% Similarity=0.216 Sum_probs=106.4
Q ss_pred CCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc----------CCcE
Q 041382 178 LDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM----------NYDI 247 (600)
Q Consensus 178 ~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l----------~~~~ 247 (600)
...|.+|++++|.....+.+...+. .+.+..++|+||||||||++|+++++.. +.++
T Consensus 147 ~~rp~~~~~iiGqs~~~~~l~~~ia-------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~f 213 (615)
T TIGR02903 147 LLRPRAFSEIVGQERAIKALLAKVA-------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPF 213 (615)
T ss_pred hcCcCcHHhceeCcHHHHHHHHHHh-------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCe
Confidence 4568999999999988887655442 1234579999999999999999998765 3578
Q ss_pred EEEecCccCC-hhHHH----------------HHHhh------------CCCcceeeecchhhhhhhhccccCCCCCCCC
Q 041382 248 YNLNLSVVTS-DSSLE----------------YLLLH------------VPNRSILVVEDIDCSIKLQNRESQKGDEPAD 298 (600)
Q Consensus 248 ~~l~~~~~~~-~~~l~----------------~~~~~------------~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~ 298 (600)
+.+++..+.. ...+. ..+.. .....+|||||++.+-.
T Consensus 214 v~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~-------------- 279 (615)
T TIGR02903 214 VEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDP-------------- 279 (615)
T ss_pred EEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCH--------------
Confidence 8998876531 11110 11111 11357999999987732
Q ss_pred CCCChHHHHHHHHHhhcCc--------c----------------ccCCCeeEEEE-ecCCcCcCCHHHHhcCCcceEEEe
Q 041382 299 SYRGPQVTLAGLLNAIDGL--------L----------------CCCGDEKITVF-TTNYKDRIDPALLRAGRMDRHINL 353 (600)
Q Consensus 299 ~~~~~~~~ls~lL~~ldg~--------~----------------~~~~~~~iiI~-TTN~~~~Ld~aLlrpgRfd~~I~~ 353 (600)
.....|+..|+.- + ...+..+++|+ ||+.++.++++|++ ||. .+++
T Consensus 280 ------~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~ 350 (615)
T TIGR02903 280 ------LLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFF 350 (615)
T ss_pred ------HHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEe
Confidence 1122333333210 0 01122355554 56778899999998 996 6789
Q ss_pred CCCCHHHHHHHHHHhcCcC
Q 041382 354 SYCTFSTFKQLAANYLDIN 372 (600)
Q Consensus 354 ~~p~~e~r~~il~~~l~~~ 372 (600)
++++.++...|++.++...
T Consensus 351 ~pls~edi~~Il~~~a~~~ 369 (615)
T TIGR02903 351 EPLTPEDIALIVLNAAEKI 369 (615)
T ss_pred CCCCHHHHHHHHHHHHHHc
Confidence 9999999999999887643
No 136
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.29 E-value=4.5e-11 Score=130.56 Aligned_cols=137 Identities=18% Similarity=0.230 Sum_probs=90.1
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCCh-------hHHHHHHhhCCCcceeeecchhhhhhhhccc
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTSD-------SSLEYLLLHVPNRSILVVEDIDCSIKLQNRE 289 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~~-------~~l~~~~~~~~~~sIL~iDeiD~l~~~~~r~ 289 (600)
.+++||||||+|||+|++|+|+++ +..+++++...+... ...........+..+|+||||+.+.+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~----- 216 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSG----- 216 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcC-----
Confidence 479999999999999999999976 678888876554311 11111112234678999999998742
Q ss_pred cCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCC-c---CcCCHHHHhcCCc--ceEEEeCCCCHHHHHH
Q 041382 290 SQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNY-K---DRIDPALLRAGRM--DRHINLSYCTFSTFKQ 363 (600)
Q Consensus 290 ~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~-~---~~Ld~aLlrpgRf--d~~I~~~~p~~e~r~~ 363 (600)
....+..+-.++|.+ ... +..+|+|+|. | ..+++.|.+ || +..+.+++|+.+.|..
T Consensus 217 ----------k~~~qeelf~l~N~l---~~~---~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~ 278 (445)
T PRK12422 217 ----------KGATQEEFFHTFNSL---HTE---GKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRS 278 (445)
T ss_pred ----------ChhhHHHHHHHHHHH---HHC---CCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHH
Confidence 011122233334333 222 1345566654 4 356799999 88 4899999999999999
Q ss_pred HHHHhcCcCCCccHHH
Q 041382 364 LAANYLDINDHDLYCH 379 (600)
Q Consensus 364 il~~~l~~~~~~~~~~ 379 (600)
|++......+....++
T Consensus 279 iL~~k~~~~~~~l~~e 294 (445)
T PRK12422 279 FLERKAEALSIRIEET 294 (445)
T ss_pred HHHHHHHHcCCCCCHH
Confidence 9998776544333333
No 137
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.29 E-value=3e-11 Score=134.39 Aligned_cols=156 Identities=15% Similarity=0.212 Sum_probs=100.9
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHc-----CCcEEEEecCccCCh-------hHHHHHHhhCCCcceeeecchhhhhhhhc
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYM-----NYDIYNLNLSVVTSD-------SSLEYLLLHVPNRSILVVEDIDCSIKLQN 287 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l-----~~~~~~l~~~~~~~~-------~~l~~~~~~~~~~sIL~iDeiD~l~~~~~ 287 (600)
..++|||++|||||+|++|+|+++ +..++++++..+... ..+..+.....+..+|+||||+.+.+ +
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~g--k 392 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLED--K 392 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccC--C
Confidence 358999999999999999999987 567888887665421 11122223334678999999998843 0
Q ss_pred cccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCc----CcCCHHHHhcCCc--ceEEEeCCCCHHHH
Q 041382 288 RESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYK----DRIDPALLRAGRM--DRHINLSYCTFSTF 361 (600)
Q Consensus 288 r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~----~~Ld~aLlrpgRf--d~~I~~~~p~~e~r 361 (600)
. .+-..|++.++.+.... .-||+|+|.+ ..+++.|.+ || ...+++..|+.+.|
T Consensus 393 -------------e---~tqeeLF~l~N~l~e~g---k~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR 451 (617)
T PRK14086 393 -------------E---STQEEFFHTFNTLHNAN---KQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETR 451 (617)
T ss_pred -------------H---HHHHHHHHHHHHHHhcC---CCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHH
Confidence 1 12233444444443321 3355577643 357899999 77 77889999999999
Q ss_pred HHHHHHhcCcCCCccHHHHHH-HhhhcCCCHHHHHHHH
Q 041382 362 KQLAANYLDINDHDLYCHIEK-LMEKVKVSPAEVAGEL 398 (600)
Q Consensus 362 ~~il~~~l~~~~~~~~~~i~~-l~~~~~~t~a~i~~~l 398 (600)
.+|++.........+..++.. ++....-+.+++.+.|
T Consensus 452 ~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~LegaL 489 (617)
T PRK14086 452 IAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGAL 489 (617)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 999998876655444443333 3333344444444443
No 138
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.28 E-value=5.4e-12 Score=116.03 Aligned_cols=105 Identities=29% Similarity=0.382 Sum_probs=74.3
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCChhHHHHHHhh---------------CCCcceeeecchhhhhhh
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYLLLH---------------VPNRSILVVEDIDCSIKL 285 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~~~~l~~~~~~---------------~~~~sIL~iDeiD~l~~~ 285 (600)
++||+||||||||++|+.+|..++.+++.+.++...+..++.....- ...++|++||||+..-+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~~- 79 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAPP- 79 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG--H-
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCCH-
Confidence 48999999999999999999999999999999887665554422211 01578999999986522
Q ss_pred hccccCCCCCCCCCCCChHHHHHHHHHhhcCccc----------cCCC-----eeEEEEecCCcC----cCCHHHHhcCC
Q 041382 286 QNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLC----------CCGD-----EKITVFTTNYKD----RIDPALLRAGR 346 (600)
Q Consensus 286 ~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~----------~~~~-----~~iiI~TTN~~~----~Ld~aLlrpgR 346 (600)
.+++.|+..++.-.- .... +..+|+|+|..+ .+++||++ |
T Consensus 80 -------------------~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--R 138 (139)
T PF07728_consen 80 -------------------EVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--R 138 (139)
T ss_dssp -------------------HHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T
T ss_pred -------------------HHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--h
Confidence 345556665543211 1111 389999999888 99999999 8
Q ss_pred c
Q 041382 347 M 347 (600)
Q Consensus 347 f 347 (600)
|
T Consensus 139 f 139 (139)
T PF07728_consen 139 F 139 (139)
T ss_dssp -
T ss_pred C
Confidence 7
No 139
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.28 E-value=6.2e-11 Score=117.85 Aligned_cols=156 Identities=19% Similarity=0.270 Sum_probs=96.7
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHc-----CCcEEEEecCccCCh-------hHHHHHHhhCCCcceeeecchhhhhhhhcc
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYM-----NYDIYNLNLSVVTSD-------SSLEYLLLHVPNRSILVVEDIDCSIKLQNR 288 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l-----~~~~~~l~~~~~~~~-------~~l~~~~~~~~~~sIL~iDeiD~l~~~~~r 288 (600)
.++||||+|+|||.|++|+|+++ +..++++++..+... ..+..+.......-+|+|||++.+.+
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~---- 111 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAG---- 111 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTT----
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcC----
Confidence 58999999999999999999975 567888887665311 22334444456778999999999853
Q ss_pred ccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCc---CCHHHHhcCCc--ceEEEeCCCCHHHHHH
Q 041382 289 ESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDR---IDPALLRAGRM--DRHINLSYCTFSTFKQ 363 (600)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~---Ld~aLlrpgRf--d~~I~~~~p~~e~r~~ 363 (600)
...+-..|+..++.+.... ..+|+.+...|.. ++|.|.+ || ...+.+..|+.+.|..
T Consensus 112 --------------~~~~q~~lf~l~n~~~~~~--k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~ 173 (219)
T PF00308_consen 112 --------------KQRTQEELFHLFNRLIESG--KQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRR 173 (219)
T ss_dssp --------------HHHHHHHHHHHHHHHHHTT--SEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHH
T ss_pred --------------chHHHHHHHHHHHHHHhhC--CeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHH
Confidence 1123344555555554432 2455444455554 5788998 77 4589999999999999
Q ss_pred HHHHhcCcCCCccHHHHHH-HhhhcCCCHHHHHHHH
Q 041382 364 LAANYLDINDHDLYCHIEK-LMEKVKVSPAEVAGEL 398 (600)
Q Consensus 364 il~~~l~~~~~~~~~~i~~-l~~~~~~t~a~i~~~l 398 (600)
|++.........+.+++.. ++....-+.+++.+.|
T Consensus 174 il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l 209 (219)
T PF00308_consen 174 ILQKKAKERGIELPEEVIEYLARRFRRDVRELEGAL 209 (219)
T ss_dssp HHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHH
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHH
Confidence 9998887665555444433 3333344555555444
No 140
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.27 E-value=2.6e-10 Score=121.57 Aligned_cols=153 Identities=18% Similarity=0.252 Sum_probs=111.4
Q ss_pred CCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC------------
Q 041382 178 LDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY------------ 245 (600)
Q Consensus 178 ~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~------------ 245 (600)
..+|.+|++|+|+++.++.+...+.. | ..+.++||+||+|+||+++|.++|+.+-.
T Consensus 12 ~~~P~~~~~iiGq~~~~~~L~~~~~~-----------~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~ 79 (365)
T PRK07471 12 APHPRETTALFGHAAAEAALLDAYRS-----------G-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPP 79 (365)
T ss_pred CCCCCchhhccChHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccc
Confidence 36899999999999999988876532 1 34568999999999999999999997721
Q ss_pred ----------------------cEEEEecC--c-------cCChhHHHHHHhhC------CCcceeeecchhhhhhhhcc
Q 041382 246 ----------------------DIYNLNLS--V-------VTSDSSLEYLLLHV------PNRSILVVEDIDCSIKLQNR 288 (600)
Q Consensus 246 ----------------------~~~~l~~~--~-------~~~~~~l~~~~~~~------~~~sIL~iDeiD~l~~~~~r 288 (600)
+++.+... . ......++.+.... ..+-|++|||+|.+-
T Consensus 80 ~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~----- 154 (365)
T PRK07471 80 PTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN----- 154 (365)
T ss_pred cccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC-----
Confidence 12222210 0 01223445444332 246799999999773
Q ss_pred ccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHh
Q 041382 289 ESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANY 368 (600)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~ 368 (600)
....+.||..++... ...++|++|+.++.+.|.+++ |+ ..|.|++|+.++-.+++...
T Consensus 155 ---------------~~aanaLLK~LEepp----~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~ 212 (365)
T PRK07471 155 ---------------ANAANALLKVLEEPP----ARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAA 212 (365)
T ss_pred ---------------HHHHHHHHHHHhcCC----CCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHh
Confidence 245677888887542 347888899999999999988 88 69999999999998888865
Q ss_pred c
Q 041382 369 L 369 (600)
Q Consensus 369 l 369 (600)
.
T Consensus 213 ~ 213 (365)
T PRK07471 213 G 213 (365)
T ss_pred c
Confidence 4
No 141
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.26 E-value=5.8e-10 Score=116.96 Aligned_cols=149 Identities=13% Similarity=0.212 Sum_probs=109.4
Q ss_pred CCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC--------cEEEEec-
Q 041382 182 MTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY--------DIYNLNL- 252 (600)
Q Consensus 182 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~--------~~~~l~~- 252 (600)
.+|++++|++.+++.+...+.. ...++.||||||+|+|||++|+++|+.+.. +++.+..
T Consensus 1 m~~~~i~g~~~~~~~l~~~~~~------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~ 68 (313)
T PRK05564 1 MSFHTIIGHENIKNRIKNSIIK------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI 68 (313)
T ss_pred CChhhccCcHHHHHHHHHHHHc------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc
Confidence 3699999999999888776621 234568999999999999999999997621 3444433
Q ss_pred -CccCChhHHHHHHhhCC------CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCee
Q 041382 253 -SVVTSDSSLEYLLLHVP------NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEK 325 (600)
Q Consensus 253 -~~~~~~~~l~~~~~~~~------~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ 325 (600)
+...+...++.+..... ..-|++||++|.+-. ...+.||..++.. +.+.
T Consensus 69 ~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~--------------------~a~naLLK~LEep----p~~t 124 (313)
T PRK05564 69 NKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE--------------------QAQNAFLKTIEEP----PKGV 124 (313)
T ss_pred cCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCH--------------------HHHHHHHHHhcCC----CCCe
Confidence 11123456776665332 356999999998732 2456788888854 3457
Q ss_pred EEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhc
Q 041382 326 ITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYL 369 (600)
Q Consensus 326 iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l 369 (600)
++|++|++++.+.|++++ |+ ..++|+.|+.++....+...+
T Consensus 125 ~~il~~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 125 FIILLCENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred EEEEEeCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHh
Confidence 777888889999999999 88 699999999998877776544
No 142
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.26 E-value=1.5e-10 Score=127.60 Aligned_cols=196 Identities=19% Similarity=0.218 Sum_probs=127.4
Q ss_pred ccCCCCCCccccccChhHHHHHHHHHHHHHh---C--------------HHHHH----HhCCCCCcceeeeCCCCCCHHH
Q 041382 176 VNLDHPMTFGTLVMDGDLKETVLNDLDCFRR---G--------------KEYYR----KIGKVWKRGYLLYGPPGTGKSS 234 (600)
Q Consensus 176 v~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~---~--------------~~~y~----~~g~~~~rgiLL~GppGtGKTs 234 (600)
|+...|..|.+|.|++.+-.+++.+|..+-- + ++.+. ..+.|+++-+||+||||-||||
T Consensus 262 Vdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTT 341 (877)
T KOG1969|consen 262 VDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTT 341 (877)
T ss_pred ecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhH
Confidence 3889999999999999999999998876521 1 01111 1356677889999999999999
Q ss_pred HHHHHHHHcCCcEEEEecCccCChhHHHHHHhhC----------CCcceeeecchhhhhhhhccccCCCCCCCCCCCChH
Q 041382 235 LIAAMANYMNYDIYNLNLSVVTSDSSLEYLLLHV----------PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQ 304 (600)
Q Consensus 235 la~alA~~l~~~~~~l~~~~~~~~~~l~~~~~~~----------~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~ 304 (600)
||+.+|++.|+.++.++.++-.+...++.-+..+ .+|..|+|||||--. .
T Consensus 342 LAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~--------------------~ 401 (877)
T KOG1969|consen 342 LAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP--------------------R 401 (877)
T ss_pred HHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCc--------------------H
Confidence 9999999999999999999988776666544333 479999999998432 1
Q ss_pred HHHHHHHHhhc--Cccc---cC------------CCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHH
Q 041382 305 VTLAGLLNAID--GLLC---CC------------GDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAAN 367 (600)
Q Consensus 305 ~~ls~lL~~ld--g~~~---~~------------~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~ 367 (600)
..+..++..+. +... .. .=.+-||+.+|. ..-|||+.---|-..|+|++|......+=++.
T Consensus 402 ~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd--LYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~ 479 (877)
T KOG1969|consen 402 AAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICND--LYAPALRPLRPFAEIIAFVPPSQSRLVERLNE 479 (877)
T ss_pred HHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecC--ccchhhhhcccceEEEEecCCChhHHHHHHHH
Confidence 12222222221 0000 00 002568899996 34688873225778999999988765554444
Q ss_pred hcCcCCC-ccHHHHHHHhhhcCCCHHHHHH
Q 041382 368 YLDINDH-DLYCHIEKLMEKVKVSPAEVAG 396 (600)
Q Consensus 368 ~l~~~~~-~~~~~i~~l~~~~~~t~a~i~~ 396 (600)
....+.- .....+..|++ ++..||..
T Consensus 480 IC~rE~mr~d~~aL~~L~e---l~~~DIRs 506 (877)
T KOG1969|consen 480 ICHRENMRADSKALNALCE---LTQNDIRS 506 (877)
T ss_pred HHhhhcCCCCHHHHHHHHH---HhcchHHH
Confidence 4333321 12233333332 45556644
No 143
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.26 E-value=3e-11 Score=123.54 Aligned_cols=152 Identities=20% Similarity=0.255 Sum_probs=102.7
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCc---EEEEecC
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYD---IYNLNLS 253 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~---~~~l~~~ 253 (600)
+..+|.++++.+|++.+.-. ...+...+.. + --.+++|+||||||||+||+.||+-...+ ++.++..
T Consensus 130 ermRPktL~dyvGQ~hlv~q-~gllrs~ieq-------~--~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt 199 (554)
T KOG2028|consen 130 ERMRPKTLDDYVGQSHLVGQ-DGLLRSLIEQ-------N--RIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT 199 (554)
T ss_pred hhcCcchHHHhcchhhhcCc-chHHHHHHHc-------C--CCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc
Confidence 34578899999998876543 2223222221 1 11379999999999999999999988666 5555544
Q ss_pred ccCChhHHHHHHhhC-------CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeE
Q 041382 254 VVTSDSSLEYLLLHV-------PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKI 326 (600)
Q Consensus 254 ~~~~~~~l~~~~~~~-------~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~i 326 (600)
.- ...+++.+|..+ .++.|||||||+.+-. ..+ ..||-.++ + +.++
T Consensus 200 ~a-~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNk----sQQ----------------D~fLP~VE-----~-G~I~ 252 (554)
T KOG2028|consen 200 NA-KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK----SQQ----------------DTFLPHVE-----N-GDIT 252 (554)
T ss_pred cc-chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh----hhh----------------hcccceec-----c-CceE
Confidence 32 346678777765 3689999999998843 100 11333322 1 3477
Q ss_pred EEEec--CCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHh
Q 041382 327 TVFTT--NYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANY 368 (600)
Q Consensus 327 iI~TT--N~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~ 368 (600)
+|++| |..-.|..||++ |+ ..+-+.....+.-..|+.+-
T Consensus 253 lIGATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 253 LIGATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred EEecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHH
Confidence 77755 455678999999 77 56777788888888888763
No 144
>PRK06620 hypothetical protein; Validated
Probab=99.26 E-value=8e-11 Score=116.62 Aligned_cols=151 Identities=19% Similarity=0.211 Sum_probs=92.1
Q ss_pred ccCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCC-CcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCc
Q 041382 176 VNLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVW-KRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSV 254 (600)
Q Consensus 176 v~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~-~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~ 254 (600)
....++-+||+++..+.-.. ....+..+.. .++..+ .+.++||||||||||+|++++|+..+..++ +...
T Consensus 7 ~~~~~~~tfd~Fvvg~~N~~-a~~~~~~~~~------~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~--~~~~ 77 (214)
T PRK06620 7 FTTSSKYHPDEFIVSSSNDQ-AYNIIKNWQC------GFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYII--KDIF 77 (214)
T ss_pred CCCCCCCCchhhEecccHHH-HHHHHHHHHH------ccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEc--chhh
Confidence 34455568999755442221 2233322221 122222 367999999999999999999998875332 2111
Q ss_pred cCChhHHHHHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCc
Q 041382 255 VTSDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYK 334 (600)
Q Consensus 255 ~~~~~~l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~ 334 (600)
. . ...+ ....+|+|||||.+- ...+-.++|.+.. . +..++|+++..|
T Consensus 78 ~-~----~~~~---~~~d~lliDdi~~~~--------------------~~~lf~l~N~~~e---~--g~~ilits~~~p 124 (214)
T PRK06620 78 F-N----EEIL---EKYNAFIIEDIENWQ--------------------EPALLHIFNIINE---K--QKYLLLTSSDKS 124 (214)
T ss_pred h-c----hhHH---hcCCEEEEeccccch--------------------HHHHHHHHHHHHh---c--CCEEEEEcCCCc
Confidence 1 0 1111 234789999998431 1234455555432 2 235666666554
Q ss_pred Cc--CCHHHHhcCCcc--eEEEeCCCCHHHHHHHHHHhcCc
Q 041382 335 DR--IDPALLRAGRMD--RHINLSYCTFSTFKQLAANYLDI 371 (600)
Q Consensus 335 ~~--Ld~aLlrpgRfd--~~I~~~~p~~e~r~~il~~~l~~ 371 (600)
.. + |+|++ |+. ..+.+..|+.+.+..+++.....
T Consensus 125 ~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 125 RNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSI 162 (214)
T ss_pred cccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHH
Confidence 44 5 89999 874 47999999999999999877654
No 145
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.26 E-value=3.4e-10 Score=120.07 Aligned_cols=150 Identities=15% Similarity=0.214 Sum_probs=107.0
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC-------c-----
Q 041382 179 DHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY-------D----- 246 (600)
Q Consensus 179 ~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~-------~----- 246 (600)
.||..|+.|+|+++++..+...+.. | ..+.++||+||+|+|||++|.++|+.+.. +
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~-----------g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~ 84 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYRE-----------G-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD 84 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHc-----------C-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC
Confidence 6899999999999999888776531 1 23458999999999999999999998743 1
Q ss_pred ------------------EEEEecC---------ccCChhHHHHHHhhC------CCcceeeecchhhhhhhhccccCCC
Q 041382 247 ------------------IYNLNLS---------VVTSDSSLEYLLLHV------PNRSILVVEDIDCSIKLQNRESQKG 293 (600)
Q Consensus 247 ------------------~~~l~~~---------~~~~~~~l~~~~~~~------~~~sIL~iDeiD~l~~~~~r~~~~~ 293 (600)
++.+... ...+...++.+.... ...-|++|||+|.+-.
T Consensus 85 ~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~--------- 155 (351)
T PRK09112 85 PDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR--------- 155 (351)
T ss_pred CCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH---------
Confidence 1111100 000123333332221 1345999999998732
Q ss_pred CCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHH
Q 041382 294 DEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAAN 367 (600)
Q Consensus 294 ~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~ 367 (600)
...+.||..++... ...++|+.|+.++.+.|.+++ |+ ..+.|++|+.++...++..
T Consensus 156 -----------~aanaLLk~LEEpp----~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~ 211 (351)
T PRK09112 156 -----------NAANAILKTLEEPP----ARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSH 211 (351)
T ss_pred -----------HHHHHHHHHHhcCC----CCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHH
Confidence 34567888887642 346677777889999999998 88 6999999999999888886
No 146
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.25 E-value=1.7e-10 Score=135.63 Aligned_cols=161 Identities=19% Similarity=0.276 Sum_probs=111.1
Q ss_pred ccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCChhH
Q 041382 184 FGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTSDSS 260 (600)
Q Consensus 184 f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~~~~ 260 (600)
++.|+|++...+.|...+.....+-. .- ..|...+||+||||||||++|+++|+.+ +.+++.++++.+.....
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~---~~-~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~ 642 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLS---DP-NRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHS 642 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhccc---CC-CCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhh
Confidence 56789999998888888755431100 00 0111358999999999999999999987 45789999887754332
Q ss_pred HHHHH---------------hh---CCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCcc-cc-
Q 041382 261 LEYLL---------------LH---VPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLL-CC- 320 (600)
Q Consensus 261 l~~~~---------------~~---~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~-~~- 320 (600)
...++ .. ....+||+|||++.+-+ ...+.|++.++.-. ..
T Consensus 643 ~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~--------------------~v~~~Ll~ile~g~l~d~ 702 (857)
T PRK10865 643 VSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHP--------------------DVFNILLQVLDDGRLTDG 702 (857)
T ss_pred HHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCH--------------------HHHHHHHHHHhhCceecC
Confidence 32222 11 12348999999997632 34566777775321 11
Q ss_pred C-----CCeeEEEEecCCc-------------------------CcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcC
Q 041382 321 C-----GDEKITVFTTNYK-------------------------DRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLD 370 (600)
Q Consensus 321 ~-----~~~~iiI~TTN~~-------------------------~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~ 370 (600)
. -.+.+||+|||.. ..+.|+|+. |+|..|.|.+++.+....|++.++.
T Consensus 703 ~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~ 780 (857)
T PRK10865 703 QGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQ 780 (857)
T ss_pred CceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHH
Confidence 0 1246889999962 235688998 9999999999999999999998875
No 147
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.23 E-value=1.2e-10 Score=123.03 Aligned_cols=130 Identities=25% Similarity=0.270 Sum_probs=91.1
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCChhHH------HHH------HhhCCC----c--ceeeecchh
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSL------EYL------LLHVPN----R--SILVVEDID 280 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~~~~l------~~~------~~~~~~----~--sIL~iDeiD 280 (600)
.+.+||-||||||||++|+++|..++.+++.+.|..-....++ ... +.-.+. . +|+++|||+
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEIn 122 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEIN 122 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccc
Confidence 3589999999999999999999999999999999865433222 221 111111 1 399999997
Q ss_pred hhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcC-------cc-ccCCCeeEEEEecC-----CcCcCCHHHHhcCCc
Q 041382 281 CSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDG-------LL-CCCGDEKITVFTTN-----YKDRIDPALLRAGRM 347 (600)
Q Consensus 281 ~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg-------~~-~~~~~~~iiI~TTN-----~~~~Ld~aLlrpgRf 347 (600)
..- ..+.+.||..|+. .. -.-....++|+|+| ....|++|+++ ||
T Consensus 123 ra~--------------------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf 180 (329)
T COG0714 123 RAP--------------------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RF 180 (329)
T ss_pred cCC--------------------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hE
Confidence 552 2355667776654 11 11224578888889 56678999999 99
Q ss_pred ceEEEeCCC-CHHHHHHHHHHhcC
Q 041382 348 DRHINLSYC-TFSTFKQLAANYLD 370 (600)
Q Consensus 348 d~~I~~~~p-~~e~r~~il~~~l~ 370 (600)
-..+.+++| ..++...+......
T Consensus 181 ~~~~~v~yp~~~~e~~~i~~~~~~ 204 (329)
T COG0714 181 LLRIYVDYPDSEEEERIILARVGG 204 (329)
T ss_pred EEEEecCCCCchHHHHHHHHhCcc
Confidence 999999999 55555555554443
No 148
>PHA02244 ATPase-like protein
Probab=99.23 E-value=1.4e-10 Score=121.67 Aligned_cols=117 Identities=21% Similarity=0.312 Sum_probs=80.0
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCc----cC----ChhHHH--HHHhhCCCcceeeecchhhhhhhhccc
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSV----VT----SDSSLE--YLLLHVPNRSILVVEDIDCSIKLQNRE 289 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~----~~----~~~~l~--~~~~~~~~~sIL~iDeiD~l~~~~~r~ 289 (600)
..+||+||||||||++|+++|..++.+++.++... +. ....+. .++.......+|+|||++.+.+
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~~GgvLiLDEId~a~p----- 194 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFKKGGLFFIDEIDASIP----- 194 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhhcCCEEEEeCcCcCCH-----
Confidence 47999999999999999999999999999887321 00 000111 2233345678999999997632
Q ss_pred cCCCCCCCCCCCChHHHHHHHHHhhc--------CccccCCCeeEEEEecCCc-----------CcCCHHHHhcCCcceE
Q 041382 290 SQKGDEPADSYRGPQVTLAGLLNAID--------GLLCCCGDEKITVFTTNYK-----------DRIDPALLRAGRMDRH 350 (600)
Q Consensus 290 ~~~~~~~~~~~~~~~~~ls~lL~~ld--------g~~~~~~~~~iiI~TTN~~-----------~~Ld~aLlrpgRfd~~ 350 (600)
.+...|...++ +... ...++.+|+|+|.+ ..|++|+++ || .+
T Consensus 195 ---------------~vq~~L~~lLd~r~l~l~g~~i~-~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF-v~ 255 (383)
T PHA02244 195 ---------------EALIIINSAIANKFFDFADERVT-AHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF-AP 255 (383)
T ss_pred ---------------HHHHHHHHHhccCeEEecCcEEe-cCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc-EE
Confidence 22333444443 1111 12357889999963 578999999 99 68
Q ss_pred EEeCCCCHHH
Q 041382 351 INLSYCTFST 360 (600)
Q Consensus 351 I~~~~p~~e~ 360 (600)
|+|++|+..+
T Consensus 256 I~~dyp~~~E 265 (383)
T PHA02244 256 IEFDYDEKIE 265 (383)
T ss_pred eeCCCCcHHH
Confidence 9999998433
No 149
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.21 E-value=2.8e-10 Score=134.12 Aligned_cols=160 Identities=18% Similarity=0.263 Sum_probs=110.8
Q ss_pred cccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCChhHH
Q 041382 185 GTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTSDSSL 261 (600)
Q Consensus 185 ~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~~~~l 261 (600)
..|+|++...+.+...+.....+- .. ...|...+||+||||||||++|+++|..+ +.+++.++++.+......
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl---~~-~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~ 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGL---SD-PNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSV 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccC---CC-CCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchH
Confidence 458999999888888876543210 00 01123468999999999999999999987 568999999877543322
Q ss_pred HHHH---------------h---hCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCcc-cc-C
Q 041382 262 EYLL---------------L---HVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLL-CC-C 321 (600)
Q Consensus 262 ~~~~---------------~---~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~-~~-~ 321 (600)
..++ . .....+||+|||||.+-+ ...+.||..|+.-. .. .
T Consensus 641 ~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~--------------------~v~~~Ll~~l~~g~l~d~~ 700 (852)
T TIGR03346 641 ARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHP--------------------DVFNVLLQVLDDGRLTDGQ 700 (852)
T ss_pred HHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCH--------------------HHHHHHHHHHhcCceecCC
Confidence 2221 1 112357999999997632 35567777775321 11 1
Q ss_pred -----CCeeEEEEecCCcC-------------------------cCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcC
Q 041382 322 -----GDEKITVFTTNYKD-------------------------RIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLD 370 (600)
Q Consensus 322 -----~~~~iiI~TTN~~~-------------------------~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~ 370 (600)
-.+.+||+|||... .+.|.|+. |+|..|.|.+++.+....|+...+.
T Consensus 701 g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~ 777 (852)
T TIGR03346 701 GRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLG 777 (852)
T ss_pred CeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHH
Confidence 13578999999621 13467776 9999999999999999999987764
No 150
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.20 E-value=1e-10 Score=123.07 Aligned_cols=153 Identities=20% Similarity=0.251 Sum_probs=102.9
Q ss_pred CccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcC-------CcE--------
Q 041382 183 TFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMN-------YDI-------- 247 (600)
Q Consensus 183 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~-------~~~-------- 247 (600)
+|..|+|++++|..++-.+..+ ...+++|.|+||||||++++++++.+. .++
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 6899999999998886554321 235899999999999999999998762 111
Q ss_pred -------------------------EEEecC----ccCChhHHHHHHhh-----------CCCcceeeecchhhhhhhhc
Q 041382 248 -------------------------YNLNLS----VVTSDSSLEYLLLH-----------VPNRSILVVEDIDCSIKLQN 287 (600)
Q Consensus 248 -------------------------~~l~~~----~~~~~~~l~~~~~~-----------~~~~sIL~iDeiD~l~~~~~ 287 (600)
..+..+ .+.+.-++...+.. ...+.+||||||+.+-+
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~--- 145 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLED--- 145 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCH---
Confidence 111110 11122233332211 12457999999998732
Q ss_pred cccCCCCCCCCCCCChHHHHHHHHHhhcC---------ccccCCCeeEEEEecCCcC-cCCHHHHhcCCcceEEEeCCCC
Q 041382 288 RESQKGDEPADSYRGPQVTLAGLLNAIDG---------LLCCCGDEKITVFTTNYKD-RIDPALLRAGRMDRHINLSYCT 357 (600)
Q Consensus 288 r~~~~~~~~~~~~~~~~~~ls~lL~~ldg---------~~~~~~~~~iiI~TTN~~~-~Ld~aLlrpgRfd~~I~~~~p~ 357 (600)
.+.+.|++.|+. ........+++|+|+|..+ .++++|+. ||..+|.+++|.
T Consensus 146 -----------------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~ 206 (337)
T TIGR02030 146 -----------------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVR 206 (337)
T ss_pred -----------------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCC
Confidence 345667777642 2222223467888888544 69999999 999999999998
Q ss_pred H-HHHHHHHHHhcC
Q 041382 358 F-STFKQLAANYLD 370 (600)
Q Consensus 358 ~-e~r~~il~~~l~ 370 (600)
. ++|.+|+++...
T Consensus 207 ~~eer~eIL~~~~~ 220 (337)
T TIGR02030 207 DVELRVEIVERRTE 220 (337)
T ss_pred CHHHHHHHHHhhhh
Confidence 6 889999987544
No 151
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.19 E-value=4.4e-10 Score=108.99 Aligned_cols=124 Identities=18% Similarity=0.272 Sum_probs=90.1
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHcCC------------------------cEEEEecCc-cCChhHHHHHHhhC----
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYMNY------------------------DIYNLNLSV-VTSDSSLEYLLLHV---- 268 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l~~------------------------~~~~l~~~~-~~~~~~l~~~~~~~---- 268 (600)
.+..+|||||||+|||++++++|+.+.. ++..++... -.+...++.+....
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~ 92 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTP 92 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCc
Confidence 4568999999999999999999998732 233333221 12334555444443
Q ss_pred --CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCC
Q 041382 269 --PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGR 346 (600)
Q Consensus 269 --~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgR 346 (600)
..+.|++|||+|.+.. ...+.||..|+... ...++|++||.+..+.+++.+ |
T Consensus 93 ~~~~~kviiide~~~l~~--------------------~~~~~Ll~~le~~~----~~~~~il~~~~~~~l~~~i~s--r 146 (188)
T TIGR00678 93 QESGRRVVIIEDAERMNE--------------------AAANALLKTLEEPP----PNTLFILITPSPEKLLPTIRS--R 146 (188)
T ss_pred ccCCeEEEEEechhhhCH--------------------HHHHHHHHHhcCCC----CCeEEEEEECChHhChHHHHh--h
Confidence 2456999999998842 24567888887632 346777888888999999999 7
Q ss_pred cceEEEeCCCCHHHHHHHHHHh
Q 041382 347 MDRHINLSYCTFSTFKQLAANY 368 (600)
Q Consensus 347 fd~~I~~~~p~~e~r~~il~~~ 368 (600)
+ ..+++++|+.++...++...
T Consensus 147 ~-~~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 147 C-QVLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred c-EEeeCCCCCHHHHHHHHHHc
Confidence 7 58999999999988888765
No 152
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.19 E-value=2.4e-10 Score=125.17 Aligned_cols=160 Identities=15% Similarity=0.272 Sum_probs=101.0
Q ss_pred CCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc-----CCcEEEEecCcc
Q 041382 181 PMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM-----NYDIYNLNLSVV 255 (600)
Q Consensus 181 p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l-----~~~~~~l~~~~~ 255 (600)
+.+|++.+..+.-. .....+..+...+ |..+ .+++||||+|||||+|++|+++++ +..++++++..+
T Consensus 111 ~~tFdnFv~g~~n~-~A~~aa~~~a~~~------~~~~-npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f 182 (450)
T PRK14087 111 ENTFENFVIGSSNE-QAFIAVQTVSKNP------GISY-NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEF 182 (450)
T ss_pred ccchhcccCCCcHH-HHHHHHHHHHhCc------Cccc-CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 46888865333222 1223333332221 2222 468999999999999999999965 467778877655
Q ss_pred CCh---------hHHHHHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeE
Q 041382 256 TSD---------SSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKI 326 (600)
Q Consensus 256 ~~~---------~~l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~i 326 (600)
... ..+...........+|+|||++.+.+ ...+...|+..++...... ..
T Consensus 183 ~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~------------------k~~~~e~lf~l~N~~~~~~---k~ 241 (450)
T PRK14087 183 ARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSY------------------KEKTNEIFFTIFNNFIEND---KQ 241 (450)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccC------------------CHHHHHHHHHHHHHHHHcC---Cc
Confidence 311 12333334445677999999997742 0112333444444333222 24
Q ss_pred EEEecCC-cC---cCCHHHHhcCCc--ceEEEeCCCCHHHHHHHHHHhcCc
Q 041382 327 TVFTTNY-KD---RIDPALLRAGRM--DRHINLSYCTFSTFKQLAANYLDI 371 (600)
Q Consensus 327 iI~TTN~-~~---~Ld~aLlrpgRf--d~~I~~~~p~~e~r~~il~~~l~~ 371 (600)
+|+|+|. |+ .+++.|.+ || +..+.+.+|+.++|.+|++..+..
T Consensus 242 iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~ 290 (450)
T PRK14087 242 LFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKN 290 (450)
T ss_pred EEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHh
Confidence 5666663 43 35789999 87 578999999999999999988764
No 153
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=3.4e-10 Score=128.33 Aligned_cols=196 Identities=17% Similarity=0.236 Sum_probs=134.1
Q ss_pred cccccChhHHHHHHHHHHHHHhCHHHHHHhCCC----CCcceeeeCCCCCCHHHHHHHHHHHcC---CcEEEEecCccCC
Q 041382 185 GTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKV----WKRGYLLYGPPGTGKSSLIAAMANYMN---YDIYNLNLSVVTS 257 (600)
Q Consensus 185 ~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~----~~rgiLL~GppGtGKTsla~alA~~l~---~~~~~l~~~~~~~ 257 (600)
..|+|+++..+.|.+.+..-. .|+. |-.++||.||.|+|||-||+++|..+. ..++.+|++.+..
T Consensus 491 ~rViGQd~AV~avs~aIrraR--------aGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~E 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRAR--------AGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYME 562 (786)
T ss_pred cceeChHHHHHHHHHHHHHHh--------cCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHH
Confidence 457999999888888775432 3332 224788999999999999999999996 7899999999986
Q ss_pred hhHHHHHHhhC------------------CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccc
Q 041382 258 DSSLEYLLLHV------------------PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLC 319 (600)
Q Consensus 258 ~~~l~~~~~~~------------------~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~ 319 (600)
...+.+++..- ...|||+||||+..-+ ..++-||..||.-.-
T Consensus 563 kHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHp--------------------dV~nilLQVlDdGrL 622 (786)
T COG0542 563 KHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHP--------------------DVFNLLLQVLDDGRL 622 (786)
T ss_pred HHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCH--------------------HHHHHHHHHhcCCee
Confidence 66666554332 1358999999997633 477889999974321
Q ss_pred c--CC-----CeeEEEEecCCc----------------------------CcCCHHHHhcCCcceEEEeCCCCHHHHHHH
Q 041382 320 C--CG-----DEKITVFTTNYK----------------------------DRIDPALLRAGRMDRHINLSYCTFSTFKQL 364 (600)
Q Consensus 320 ~--~~-----~~~iiI~TTN~~----------------------------~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~i 364 (600)
. .| .+.|||||||-= ..+.|+++. |+|..|.|.+.+.+...+|
T Consensus 623 TD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~I 700 (786)
T COG0542 623 TDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERI 700 (786)
T ss_pred ecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHH
Confidence 1 12 257999999831 113577777 9999999999999999999
Q ss_pred HHHhcCcCCCccHHHHHHHhhh----cCCCHHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 041382 365 AANYLDINDHDLYCHIEKLMEK----VKVSPAEVAGELMKAKGSKTSLEDFITYLESK 418 (600)
Q Consensus 365 l~~~l~~~~~~~~~~i~~l~~~----~~~t~a~i~~~l~~~~~~~~al~~l~~~l~~~ 418 (600)
+...+.. +...+.. ..+|++-.....-+..++.-..+.+..+++..
T Consensus 701 v~~~L~~--------l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~ 750 (786)
T COG0542 701 VDLQLNR--------LAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQE 750 (786)
T ss_pred HHHHHHH--------HHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHH
Confidence 9988753 1111111 13444444333334445555555555555443
No 154
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.18 E-value=1.5e-10 Score=123.10 Aligned_cols=70 Identities=19% Similarity=0.306 Sum_probs=52.5
Q ss_pred ccccChhHHHHHHHHHHHHHhCHHHHHHh-CCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCcc
Q 041382 186 TLVMDGDLKETVLNDLDCFRRGKEYYRKI-GKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVV 255 (600)
Q Consensus 186 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~-g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~ 255 (600)
.++|+++.|+.+.-.+.....+......+ +-..|+++||+||||||||++++++|..++.+++.++.+.+
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~ 83 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 83 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeeccee
Confidence 37999999999987776543322111111 12245799999999999999999999999999999997644
No 155
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.18 E-value=4.3e-10 Score=132.18 Aligned_cols=159 Identities=18% Similarity=0.270 Sum_probs=108.5
Q ss_pred cccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCChhHH
Q 041382 185 GTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTSDSSL 261 (600)
Q Consensus 185 ~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~~~~l 261 (600)
+.|+|+++.++.|...+.....+ .... ..|...+||+||||||||++|+++|+.+ +.+++.++++.+.....+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~g---l~~~-~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVG---LKNP-NRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhc---ccCC-CCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccH
Confidence 45789988888888777533211 0000 1122358999999999999999999987 467889998876432222
Q ss_pred H-------------------HHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCcc-c-c
Q 041382 262 E-------------------YLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLL-C-C 320 (600)
Q Consensus 262 ~-------------------~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~-~-~ 320 (600)
. ..+.. ...+|++|||+|.+-+ ...+.|+..||.-. . .
T Consensus 585 ~~l~g~~~gyvg~~~~~~l~~~~~~-~p~~VvllDeieka~~--------------------~v~~~Llq~le~g~~~d~ 643 (821)
T CHL00095 585 SKLIGSPPGYVGYNEGGQLTEAVRK-KPYTVVLFDEIEKAHP--------------------DIFNLLLQILDDGRLTDS 643 (821)
T ss_pred HHhcCCCCcccCcCccchHHHHHHh-CCCeEEEECChhhCCH--------------------HHHHHHHHHhccCceecC
Confidence 2 22211 2348999999997732 35667788877421 1 1
Q ss_pred C-----CCeeEEEEecCCcCc-------------------------------------CCHHHHhcCCcceEEEeCCCCH
Q 041382 321 C-----GDEKITVFTTNYKDR-------------------------------------IDPALLRAGRMDRHINLSYCTF 358 (600)
Q Consensus 321 ~-----~~~~iiI~TTN~~~~-------------------------------------Ld~aLlrpgRfd~~I~~~~p~~ 358 (600)
. -.+.+||+|||.... +.|.|+. |+|..|.|.+.+.
T Consensus 644 ~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~ 721 (821)
T CHL00095 644 KGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTK 721 (821)
T ss_pred CCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCH
Confidence 1 135899999984211 2366777 9999999999999
Q ss_pred HHHHHHHHHhcC
Q 041382 359 STFKQLAANYLD 370 (600)
Q Consensus 359 e~r~~il~~~l~ 370 (600)
++..+|+...+.
T Consensus 722 ~~l~~Iv~~~l~ 733 (821)
T CHL00095 722 NDVWEIAEIMLK 733 (821)
T ss_pred HHHHHHHHHHHH
Confidence 999999987775
No 156
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=9e-10 Score=117.31 Aligned_cols=191 Identities=15% Similarity=0.184 Sum_probs=127.2
Q ss_pred cccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCc-----EEEEecCccCChhHH
Q 041382 187 LVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYD-----IYNLNLSVVTSDSSL 261 (600)
Q Consensus 187 l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~-----~~~l~~~~~~~~~~l 261 (600)
+.+.+++.+.+...+..++.+ ..|.++++|||||||||++++.++.++.-. ++++||....+...+
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~---------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 19 LPHREEEINQLASFLAPALRG---------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcC---------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHH
Confidence 888999999999888776663 123469999999999999999999988544 889999877643222
Q ss_pred H-------------------------HHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcC
Q 041382 262 E-------------------------YLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDG 316 (600)
Q Consensus 262 ~-------------------------~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg 316 (600)
- +.+.......|+++||+|.+.. +. . ..+-.|+...+.
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~---~~-----------~---~~LY~L~r~~~~ 152 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVD---KD-----------G---EVLYSLLRAPGE 152 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcc---cc-----------c---hHHHHHHhhccc
Confidence 1 1222223467999999999974 10 0 244444444333
Q ss_pred ccccCCCeeEEEEecCCc---CcCCHHHHhcCCc-ceEEEeCCCCHHHHHHHHHHhcCc--CCCccHHHHHHHhhhcCCC
Q 041382 317 LLCCCGDEKITVFTTNYK---DRIDPALLRAGRM-DRHINLSYCTFSTFKQLAANYLDI--NDHDLYCHIEKLMEKVKVS 390 (600)
Q Consensus 317 ~~~~~~~~~iiI~TTN~~---~~Ld~aLlrpgRf-d~~I~~~~p~~e~r~~il~~~l~~--~~~~~~~~i~~l~~~~~~t 390 (600)
. ...+++|+.+|.. +.+||.+.+ ++ ..+|.||+.+.++...|+...... .+....+.+-.++.
T Consensus 153 ~----~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia----- 221 (366)
T COG1474 153 N----KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIA----- 221 (366)
T ss_pred c----ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHH-----
Confidence 3 3457888988864 678999987 55 356999999999999999977652 12222222222211
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHHhhh
Q 041382 391 PAEVAGELM-KAKGSKTSLEDFITYLESKE 419 (600)
Q Consensus 391 ~a~i~~~l~-~~~~~~~al~~l~~~l~~~~ 419 (600)
..-. ..+|+..|++-+..+.+...
T Consensus 222 -----~~~a~~~GDAR~aidilr~A~eiAe 246 (366)
T COG1474 222 -----ALVAAESGDARKAIDILRRAGEIAE 246 (366)
T ss_pred -----HHHHHcCccHHHHHHHHHHHHHHHH
Confidence 1111 22478888888888876544
No 157
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.17 E-value=1.5e-10 Score=123.26 Aligned_cols=71 Identities=21% Similarity=0.295 Sum_probs=51.8
Q ss_pred ccccChhHHHHHHHHHHHHHhCHHHHHHhCC-CCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC
Q 041382 186 TLVMDGDLKETVLNDLDCFRRGKEYYRKIGK-VWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT 256 (600)
Q Consensus 186 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~-~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~ 256 (600)
.|+|+++.|+.+...+.....+......... -.|+++||+||||||||++|+++|..++.+++.++++.+.
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~ 87 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFT 87 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhc
Confidence 3899999999998777543221111001111 1257899999999999999999999999999999986443
No 158
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.16 E-value=5.6e-10 Score=130.93 Aligned_cols=156 Identities=19% Similarity=0.284 Sum_probs=108.4
Q ss_pred cccccChhHHHHHHHHHHHHHhCHHHHHHhCC-CCCcc-eeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCChh
Q 041382 185 GTLVMDGDLKETVLNDLDCFRRGKEYYRKIGK-VWKRG-YLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTSDS 259 (600)
Q Consensus 185 ~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~-~~~rg-iLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~~~ 259 (600)
..|+|+++..+.|.+.+.....+ +.. ..|.| +||+||||||||.+|+++|..+ ...++.++++.+....
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~g------l~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAG------LEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAH 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcC------CCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhh
Confidence 35789999999888887654221 111 12334 7999999999999999999998 4578899987764221
Q ss_pred H-------------------HHHHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCcc--
Q 041382 260 S-------------------LEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLL-- 318 (600)
Q Consensus 260 ~-------------------l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~-- 318 (600)
. +...+.. ...+||+|||||..-+ ...+.|+..+|.-.
T Consensus 640 ~~~~l~g~~~gyvg~~~~g~L~~~v~~-~p~svvllDEieka~~--------------------~v~~~Llq~ld~g~l~ 698 (852)
T TIGR03345 640 TVSRLKGSPPGYVGYGEGGVLTEAVRR-KPYSVVLLDEVEKAHP--------------------DVLELFYQVFDKGVME 698 (852)
T ss_pred hhccccCCCCCcccccccchHHHHHHh-CCCcEEEEechhhcCH--------------------HHHHHHHHHhhcceee
Confidence 1 2222222 4579999999986532 34566777776332
Q ss_pred ccCC-----CeeEEEEecCCc-----------------------------CcCCHHHHhcCCcceEEEeCCCCHHHHHHH
Q 041382 319 CCCG-----DEKITVFTTNYK-----------------------------DRIDPALLRAGRMDRHINLSYCTFSTFKQL 364 (600)
Q Consensus 319 ~~~~-----~~~iiI~TTN~~-----------------------------~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~i 364 (600)
...| .+.+||+|||.. ..+.|+|+. |++ .|.|.+.+.+...+|
T Consensus 699 d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~I 775 (852)
T TIGR03345 699 DGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAI 775 (852)
T ss_pred cCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHH
Confidence 1111 357999999841 125678888 997 899999999999999
Q ss_pred HHHhcC
Q 041382 365 AANYLD 370 (600)
Q Consensus 365 l~~~l~ 370 (600)
+...+.
T Consensus 776 v~~~L~ 781 (852)
T TIGR03345 776 VRLKLD 781 (852)
T ss_pred HHHHHH
Confidence 987774
No 159
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=99.13 E-value=1.8e-10 Score=119.84 Aligned_cols=126 Identities=24% Similarity=0.335 Sum_probs=119.0
Q ss_pred CCcchhhHHHHHHHHHHhhhhHHHhcCccchhhHHHHHHHHHHHHHHHHh--ccccccccHHHHHHHHHHHHHHHhCCcc
Q 041382 472 GGYSVKAEFANIIKAIFSKHGDIAANSCLQSKQCRSSLLEIVCRIIQKLQ--KAKLKDLKETELKSMLSELQDLESMRLE 549 (600)
Q Consensus 472 ~g~~v~~~~~~~v~~~~~k~~di~~~~~~~~~~~r~~~~~~l~~vi~~l~--~~p~~~ls~~el~~~~~~~~~L~~~~~~ 549 (600)
+||++..++.++++.++++||++++.|+.+++.+|..|+..+++.|++++ ++ ++.++..++..+.....++..+||+
T Consensus 156 ~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~lk~~~~~~l~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~ 234 (297)
T KOG1987|consen 156 NGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRHLKLACMPVLLSLIETLNVSQS-LQEASNYDLKEAKSALTYVIAAGFK 234 (297)
T ss_pred ceEEEeccchHHHHHhhcCChhhhhccccccHHHHHHHHHHHHHHHHhhhhccc-HHHhchhHHHHHHHHHHHHHhccch
Confidence 99999999999999999999999999999999999999999999999999 77 6899999999999999999999999
Q ss_pred hhhchhHHHHH--------HHHHhHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhcc
Q 041382 550 VGWLRKRLDEI--------VEAMRLFELIAVSEKLSDTIFSTEVKLNCIYNKSLVEG 598 (600)
Q Consensus 550 ~~wl~~~l~e~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 598 (600)
+|||.+|++++ ....++++++++++.+++.|.+++..+.+.++++.++.
T Consensus 235 ld~l~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 291 (297)
T KOG1987|consen 235 LDWLEKKLNEVKEKKKKDLWYEIRLQELEEELKSLKDKCSDLEGLLVKDKAEVEAES 291 (297)
T ss_pred HhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhccc
Confidence 99999999986 44678889999999999999999999999988887664
No 160
>PRK09087 hypothetical protein; Validated
Probab=99.13 E-value=7.5e-10 Score=110.59 Aligned_cols=125 Identities=14% Similarity=0.146 Sum_probs=79.3
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCChhHHHHHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCC
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSY 300 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~ 300 (600)
.++||||+|+|||+|++++|+..+..++.. ..+. ...+..+ ...+|+|||+|.+..
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~~i~~--~~~~-~~~~~~~-----~~~~l~iDDi~~~~~---------------- 101 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDALLIHP--NEIG-SDAANAA-----AEGPVLIEDIDAGGF---------------- 101 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCEEecH--HHcc-hHHHHhh-----hcCeEEEECCCCCCC----------------
Confidence 489999999999999999999876554433 2221 1111111 125889999996521
Q ss_pred CChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCc---CCHHHHhcCCcc--eEEEeCCCCHHHHHHHHHHhcCcCCCc
Q 041382 301 RGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDR---IDPALLRAGRMD--RHINLSYCTFSTFKQLAANYLDINDHD 375 (600)
Q Consensus 301 ~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~---Ld~aLlrpgRfd--~~I~~~~p~~e~r~~il~~~l~~~~~~ 375 (600)
.+..+-.++|. .... +..++|.++..|.. ..|.|++ ||. ..+++..|+.+.|.+++++.+...+..
T Consensus 102 --~~~~lf~l~n~---~~~~--g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~ 172 (226)
T PRK09087 102 --DETGLFHLINS---VRQA--GTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLY 172 (226)
T ss_pred --CHHHHHHHHHH---HHhC--CCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 11223334444 3322 12444444444433 3688998 874 899999999999999999888765443
Q ss_pred cHH
Q 041382 376 LYC 378 (600)
Q Consensus 376 ~~~ 378 (600)
+.+
T Consensus 173 l~~ 175 (226)
T PRK09087 173 VDP 175 (226)
T ss_pred CCH
Confidence 333
No 161
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.11 E-value=7.6e-10 Score=119.07 Aligned_cols=133 Identities=18% Similarity=0.319 Sum_probs=79.6
Q ss_pred ccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCc-----EEEEecC-----
Q 041382 184 FGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYD-----IYNLNLS----- 253 (600)
Q Consensus 184 f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~-----~~~l~~~----- 253 (600)
++++.+.++..+.+...+. .+++++|+||||||||++|+++|..++.. +..+..+
T Consensus 174 l~d~~i~e~~le~l~~~L~---------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySY 238 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT---------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSY 238 (459)
T ss_pred hhcccCCHHHHHHHHHHHh---------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccH
Confidence 4556666655555544432 24689999999999999999999988532 1111111
Q ss_pred -ccC-----C-------hhHHHHHHhhC----CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhc-
Q 041382 254 -VVT-----S-------DSSLEYLLLHV----PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAID- 315 (600)
Q Consensus 254 -~~~-----~-------~~~l~~~~~~~----~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ld- 315 (600)
++. . ...+.++...+ ..|+|||||||+..-. . ..+..++..|+
T Consensus 239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani--~-----------------kiFGel~~lLE~ 299 (459)
T PRK11331 239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL--S-----------------KVFGEVMMLMEH 299 (459)
T ss_pred HHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCH--H-----------------Hhhhhhhhhccc
Confidence 110 0 01122222232 3589999999986421 0 11112222221
Q ss_pred -------------------CccccCCCeeEEEEecCCcC----cCCHHHHhcCCcceEEEeCC
Q 041382 316 -------------------GLLCCCGDEKITVFTTNYKD----RIDPALLRAGRMDRHINLSY 355 (600)
Q Consensus 316 -------------------g~~~~~~~~~iiI~TTN~~~----~Ld~aLlrpgRfd~~I~~~~ 355 (600)
.+ .-+.++.||+|+|..+ .+|.||+| || ..|++.+
T Consensus 300 ~~rg~~~~v~l~y~e~d~e~f--~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF-~fi~i~p 357 (459)
T PRK11331 300 DKRGENWSVPLTYSENDEERF--YVPENVYIIGLMNTADRSLAVVDYALRR--RF-SFIDIEP 357 (459)
T ss_pred cccccccceeeeccccccccc--cCCCCeEEEEecCccccchhhccHHHHh--hh-heEEecC
Confidence 12 2235799999999887 79999999 99 4677764
No 162
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.08 E-value=2.1e-10 Score=109.56 Aligned_cols=108 Identities=25% Similarity=0.409 Sum_probs=74.3
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHcCC----cEEEEecCccCC----hhHHHHHHhhCC------Ccceeeecchhhhh
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYMNY----DIYNLNLSVVTS----DSSLEYLLLHVP------NRSILVVEDIDCSI 283 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l~~----~~~~l~~~~~~~----~~~l~~~~~~~~------~~sIL~iDeiD~l~ 283 (600)
|...+||.||+|||||.+|+++|..+.. +++.+|++.+.. ...+..++...+ ...||||||||.+.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~ 81 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAH 81 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCS
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhcc
Confidence 3457899999999999999999999996 999999999987 455555555443 34699999999985
Q ss_pred hhhccccCCCCCCCCCCCChHHHHHHHHHhhcCcccc--CC-----CeeEEEEecCCc
Q 041382 284 KLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCC--CG-----DEKITVFTTNYK 334 (600)
Q Consensus 284 ~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~--~~-----~~~iiI~TTN~~ 334 (600)
+ +. +. ..+.......+.||..||+-.-. .+ .+.++|+|+|--
T Consensus 82 ~---~~--~~----~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 82 P---SN--SG----GADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp H---TT--TT----CSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred c---cc--cc----cchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 4 10 00 11122234567778877643211 11 358999999853
No 163
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.08 E-value=1.5e-09 Score=114.55 Aligned_cols=146 Identities=18% Similarity=0.245 Sum_probs=104.5
Q ss_pred Ccccccc-ChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC----------------
Q 041382 183 TFGTLVM-DGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY---------------- 245 (600)
Q Consensus 183 ~f~~l~g-~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~---------------- 245 (600)
.|++|+| ++.+++.+...+.. ...+..||||||+|+||+++|+++|+.+..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 4778888 77777777665521 134568999999999999999999998621
Q ss_pred --------cEEEEecCc-cCChhHHHHHHhhCC------CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHH
Q 041382 246 --------DIYNLNLSV-VTSDSSLEYLLLHVP------NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGL 310 (600)
Q Consensus 246 --------~~~~l~~~~-~~~~~~l~~~~~~~~------~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~l 310 (600)
++..+.... -.+...++.+....+ ..-|++||++|.+-. ...+.|
T Consensus 71 ~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~--------------------~a~NaL 130 (329)
T PRK08058 71 RIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA--------------------SAANSL 130 (329)
T ss_pred HHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH--------------------HHHHHH
Confidence 233332211 112345665554332 346999999998732 355778
Q ss_pred HHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHH
Q 041382 311 LNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAAN 367 (600)
Q Consensus 311 L~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~ 367 (600)
|..|+.. ++..++|++|+.+..|.|++++ |+ ..++|++|+.++..+.+..
T Consensus 131 LK~LEEP----p~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 131 LKFLEEP----SGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHHhcCC----CCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 8888864 3457888899999999999999 88 6899999999987766653
No 164
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.08 E-value=1.1e-09 Score=125.25 Aligned_cols=153 Identities=21% Similarity=0.199 Sum_probs=105.7
Q ss_pred CccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc-------------------
Q 041382 183 TFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM------------------- 243 (600)
Q Consensus 183 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l------------------- 243 (600)
+|..|+|++.+|..+.-.+... ...|+||+||||||||++|+++++.+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 5889999999887775443211 12489999999999999999999988
Q ss_pred ----------------CCcEEEEecCcc----CChhHHHHHHhhC-----------CCcceeeecchhhhhhhhccccCC
Q 041382 244 ----------------NYDIYNLNLSVV----TSDSSLEYLLLHV-----------PNRSILVVEDIDCSIKLQNRESQK 292 (600)
Q Consensus 244 ----------------~~~~~~l~~~~~----~~~~~l~~~~~~~-----------~~~sIL~iDeiD~l~~~~~r~~~~ 292 (600)
..+++.+.++.. .+..++...+... ....|||||||+.+-.
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~-------- 140 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD-------- 140 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH--------
Confidence 356777665532 1222333333211 2446999999998842
Q ss_pred CCCCCCCCCChHHHHHHHHHhhcCc---------cccCCCeeEEEEecCCc-CcCCHHHHhcCCcceEEEeCCCC-HHHH
Q 041382 293 GDEPADSYRGPQVTLAGLLNAIDGL---------LCCCGDEKITVFTTNYK-DRIDPALLRAGRMDRHINLSYCT-FSTF 361 (600)
Q Consensus 293 ~~~~~~~~~~~~~~ls~lL~~ldg~---------~~~~~~~~iiI~TTN~~-~~Ld~aLlrpgRfd~~I~~~~p~-~e~r 361 (600)
.+.+.|+..|+.- .......+++|+|+|.. ..+.++|+. ||+.+|.++++. .+++
T Consensus 141 ------------~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~ 206 (633)
T TIGR02442 141 ------------HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEER 206 (633)
T ss_pred ------------HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHH
Confidence 3566778777521 11112347888999853 468999999 999999998885 5778
Q ss_pred HHHHHHhcC
Q 041382 362 KQLAANYLD 370 (600)
Q Consensus 362 ~~il~~~l~ 370 (600)
.+++...+.
T Consensus 207 ~~il~~~~~ 215 (633)
T TIGR02442 207 VEIIRRRLA 215 (633)
T ss_pred HHHHHHHHh
Confidence 888876543
No 165
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.06 E-value=5.1e-09 Score=110.15 Aligned_cols=125 Identities=18% Similarity=0.278 Sum_probs=94.3
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHcCC------------------------cEEEEecC---ccCChhHHHHHHhhCC-
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYMNY------------------------DIYNLNLS---VVTSDSSLEYLLLHVP- 269 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l~~------------------------~~~~l~~~---~~~~~~~l~~~~~~~~- 269 (600)
.+.++||+||+|+|||++|.++|+.+.. +++.+... ...+...++.+.....
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~ 100 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQ 100 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhh
Confidence 3568999999999999999999998732 45555432 1234466776655442
Q ss_pred -----CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhc
Q 041382 270 -----NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRA 344 (600)
Q Consensus 270 -----~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrp 344 (600)
..-|++||++|.+-. ...+.||..|+.. +++.++|++|++++.|.|.+++
T Consensus 101 ~~~~~~~kv~iI~~a~~m~~--------------------~aaNaLLK~LEEP----p~~~~fiL~t~~~~~ll~TI~S- 155 (328)
T PRK05707 101 TAQLGGRKVVLIEPAEAMNR--------------------NAANALLKSLEEP----SGDTVLLLISHQPSRLLPTIKS- 155 (328)
T ss_pred ccccCCCeEEEECChhhCCH--------------------HHHHHHHHHHhCC----CCCeEEEEEECChhhCcHHHHh-
Confidence 345889999998832 3567899988864 2458899999999999999999
Q ss_pred CCcceEEEeCCCCHHHHHHHHHHhc
Q 041382 345 GRMDRHINLSYCTFSTFKQLAANYL 369 (600)
Q Consensus 345 gRfd~~I~~~~p~~e~r~~il~~~l 369 (600)
|+ ..+.|++|+.++-.+.+....
T Consensus 156 -Rc-~~~~~~~~~~~~~~~~L~~~~ 178 (328)
T PRK05707 156 -RC-QQQACPLPSNEESLQWLQQAL 178 (328)
T ss_pred -hc-eeeeCCCcCHHHHHHHHHHhc
Confidence 99 579999999998877776543
No 166
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.06 E-value=4.5e-09 Score=109.99 Aligned_cols=147 Identities=14% Similarity=0.179 Sum_probs=105.3
Q ss_pred CccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC-----------------
Q 041382 183 TFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY----------------- 245 (600)
Q Consensus 183 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~----------------- 245 (600)
.|++|+|++.+++.+...+.. | ..+.+|||+||+|+||+++|.++|+.+-.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------N-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------C-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 589999999999988877642 1 22459999999999999999999998621
Q ss_pred -cEEEEecCcc-----------------------CChhHHHHHHhhCC------CcceeeecchhhhhhhhccccCCCCC
Q 041382 246 -DIYNLNLSVV-----------------------TSDSSLEYLLLHVP------NRSILVVEDIDCSIKLQNRESQKGDE 295 (600)
Q Consensus 246 -~~~~l~~~~~-----------------------~~~~~l~~~~~~~~------~~sIL~iDeiD~l~~~~~r~~~~~~~ 295 (600)
+++.+..... ..-..++.+..... ..-|++||++|.+-.
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~----------- 138 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE----------- 138 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH-----------
Confidence 1222222100 01123444433321 356999999987732
Q ss_pred CCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhc
Q 041382 296 PADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYL 369 (600)
Q Consensus 296 ~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l 369 (600)
...+.||..|+... ..++|++|++++.|-|++++ |+ ..|.|++++.++..+++....
T Consensus 139 ---------~aaNaLLK~LEEPp-----~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 139 ---------AAANALLKTLEEPG-----NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred ---------HHHHHHHHHHhCCC-----CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhh
Confidence 35577888887642 34678888899999999999 88 799999999999888888653
No 167
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.04 E-value=3.3e-10 Score=101.55 Aligned_cols=105 Identities=25% Similarity=0.302 Sum_probs=61.3
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCChhHHHHH--Hh-------hCC---Ccceeeecchhhhhhhhcc
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYL--LL-------HVP---NRSILVVEDIDCSIKLQNR 288 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~~~~l~~~--~~-------~~~---~~sIL~iDeiD~l~~~~~r 288 (600)
.+||.|+||+|||++|+++|+.++..+..+.++.-...+++... +. -.. -..|+++|||...-
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrap----- 75 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAP----- 75 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS------
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCC-----
Confidence 47999999999999999999999999999987532222222211 11 011 13599999997553
Q ss_pred ccCCCCCCCCCCCChHHHHHHHHHhhc-------CccccCCCeeEEEEecCCcC-----cCCHHHHhcCCc
Q 041382 289 ESQKGDEPADSYRGPQVTLAGLLNAID-------GLLCCCGDEKITVFTTNYKD-----RIDPALLRAGRM 347 (600)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~ls~lL~~ld-------g~~~~~~~~~iiI~TTN~~~-----~Ld~aLlrpgRf 347 (600)
..+.+.||..|. |..-..+...+||+|-|..+ .|+.|++. ||
T Consensus 76 ---------------pktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 76 ---------------PKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp ---------------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred ---------------HHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 257788888883 33333445688999999877 78999999 88
No 168
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.03 E-value=2.3e-09 Score=116.34 Aligned_cols=128 Identities=20% Similarity=0.197 Sum_probs=81.8
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcCC--cEEEEecC-----ccCChhHHHH-----HHhh-----CCCcceeeecchhh
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMNY--DIYNLNLS-----VVTSDSSLEY-----LLLH-----VPNRSILVVEDIDC 281 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~~--~~~~l~~~-----~~~~~~~l~~-----~~~~-----~~~~sIL~iDeiD~ 281 (600)
...+||+||||||||++|+++|..++. ++..+.+. ++.+...+.. .|.. .+...+||+|||..
T Consensus 39 g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~r 118 (498)
T PRK13531 39 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWK 118 (498)
T ss_pred CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeeccccc
Confidence 458999999999999999999998753 33433332 1211111111 1111 11334999999975
Q ss_pred hhhhhccccCCCCCCCCCCCChHHHHHHHHHhhc-CccccCC-----CeeEEEEecCCcC---cCCHHHHhcCCcceEEE
Q 041382 282 SIKLQNRESQKGDEPADSYRGPQVTLAGLLNAID-GLLCCCG-----DEKITVFTTNYKD---RIDPALLRAGRMDRHIN 352 (600)
Q Consensus 282 l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ld-g~~~~~~-----~~~iiI~TTN~~~---~Ld~aLlrpgRfd~~I~ 352 (600)
+. ..+.+.||..|. +.....+ +.+++++|||... ...+|+.. ||-..|.
T Consensus 119 as--------------------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~ 176 (498)
T PRK13531 119 AG--------------------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLW 176 (498)
T ss_pred CC--------------------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEE
Confidence 42 357788898883 3322111 2357777888422 23359999 9988999
Q ss_pred eCCCC-HHHHHHHHHHh
Q 041382 353 LSYCT-FSTFKQLAANY 368 (600)
Q Consensus 353 ~~~p~-~e~r~~il~~~ 368 (600)
+|+|+ .++.++|+...
T Consensus 177 vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 177 LDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CCCCCchHHHHHHHHcc
Confidence 99997 56778888764
No 169
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.03 E-value=2.1e-09 Score=121.23 Aligned_cols=206 Identities=18% Similarity=0.210 Sum_probs=120.1
Q ss_pred cccccccccCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEE
Q 041382 169 DRWSSSGVNLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIY 248 (600)
Q Consensus 169 ~~w~~~~v~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~ 248 (600)
..|. ....|.++++|+|+++..+.+...+.... .+..+++.++|+||||||||++++++|+.++..++
T Consensus 72 ~pW~----eKyrP~~ldel~~~~~ki~~l~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~ 139 (637)
T TIGR00602 72 EPWV----EKYKPETQHELAVHKKKIEEVETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQ 139 (637)
T ss_pred CchH----HHhCCCCHHHhcCcHHHHHHHHHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHH
Confidence 3577 78899999999999999888777664322 12334456999999999999999999999886543
Q ss_pred E-Ee---cCc--------------c----CChhHHHHHHhhC------------CCcceeeecchhhhhhhhccccCCCC
Q 041382 249 N-LN---LSV--------------V----TSDSSLEYLLLHV------------PNRSILVVEDIDCSIKLQNRESQKGD 294 (600)
Q Consensus 249 ~-l~---~~~--------------~----~~~~~l~~~~~~~------------~~~sIL~iDeiD~l~~~~~r~~~~~~ 294 (600)
. .+ +.. + .....+..++..+ ..+.||||||||.++. |
T Consensus 140 Ew~npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~---r------ 210 (637)
T TIGR00602 140 EWSNPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFY---R------ 210 (637)
T ss_pred HHhhhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhch---h------
Confidence 3 11 100 0 1123333333322 2567999999998753 1
Q ss_pred CCCCCCCChHHHHHHHHH-hhcCccccCCCeeEEEEecCCcC--------------cCCHHHHhcCCcceEEEeCCCCHH
Q 041382 295 EPADSYRGPQVTLAGLLN-AIDGLLCCCGDEKITVFTTNYKD--------------RIDPALLRAGRMDRHINLSYCTFS 359 (600)
Q Consensus 295 ~~~~~~~~~~~~ls~lL~-~ldg~~~~~~~~~iiI~TTN~~~--------------~Ld~aLlrpgRfd~~I~~~~p~~e 359 (600)
....+..+|. .... .+ .-.+|+++|..+. .|.++++...|+ .+|.|++.+..
T Consensus 211 --------~~~~lq~lLr~~~~e---~~-~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t 277 (637)
T TIGR00602 211 --------DTRALHEILRWKYVS---IG-RCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPT 277 (637)
T ss_pred --------hHHHHHHHHHHHhhc---CC-CceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHH
Confidence 1113444544 1111 11 1123333331221 134788853355 48999999999
Q ss_pred HHHHHHHHhcCcCCCccHHHHHHHhhhcCC-CHHHHHHHH-HhcCCHHHHHHHHHHHH
Q 041382 360 TFKQLAANYLDINDHDLYCHIEKLMEKVKV-SPAEVAGEL-MKAKGSKTSLEDFITYL 415 (600)
Q Consensus 360 ~r~~il~~~l~~~~~~~~~~i~~l~~~~~~-t~a~i~~~l-~~~~~~~~al~~l~~~l 415 (600)
..+..++..+..+...... ...+ ++..+...+ ...+|...|+..|.-+.
T Consensus 278 ~l~K~L~rIl~~E~~~~~~-------~~~~p~~~~l~~I~~~s~GDiRsAIn~LQf~~ 328 (637)
T TIGR00602 278 IMKKFLNRIVTIEAKKNGE-------KIKVPKKTSVELLCQGCSGDIRSAINSLQFSS 328 (637)
T ss_pred HHHHHHHHHHHhhhhcccc-------ccccCCHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 9888888777543211110 0111 223333333 23456777777776554
No 170
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.01 E-value=4.4e-09 Score=110.24 Aligned_cols=143 Identities=20% Similarity=0.229 Sum_probs=101.0
Q ss_pred ccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcC---------------------
Q 041382 186 TLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMN--------------------- 244 (600)
Q Consensus 186 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~--------------------- 244 (600)
++++.+.....+....... | ..+..+|||||||||||++|.++|+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~----------~-~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES----------G-RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CcccchhHHHHHHHHHHhc----------C-CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 4556666666665544321 1 2233799999999999999999999886
Q ss_pred ---CcEEEEecCccCC----hhHHHHHHhhCC------CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHH
Q 041382 245 ---YDIYNLNLSVVTS----DSSLEYLLLHVP------NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLL 311 (600)
Q Consensus 245 ---~~~~~l~~~~~~~----~~~l~~~~~~~~------~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL 311 (600)
-+++.++.++... ...++.+..... ..-|++|||+|.+-. ...+.++
T Consensus 71 ~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~--------------------~A~nall 130 (325)
T COG0470 71 GNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE--------------------DAANALL 130 (325)
T ss_pred cCCCceEEecccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH--------------------HHHHHHH
Confidence 5788888887765 334554444332 346999999999843 2445677
Q ss_pred HhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHH
Q 041382 312 NAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAA 366 (600)
Q Consensus 312 ~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~ 366 (600)
..+... ..+..+|++||++..+-|.+.+ |+ ..+.|++|+...+.....
T Consensus 131 k~lEep----~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 131 KTLEEP----PKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIAWLE 178 (325)
T ss_pred HHhccC----CCCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHHHhh
Confidence 666643 3457899999999999999999 88 689998866655544443
No 171
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.00 E-value=9.7e-10 Score=110.68 Aligned_cols=122 Identities=20% Similarity=0.337 Sum_probs=77.3
Q ss_pred HHHHHhcCceeEEeecCCcccccccccCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCC
Q 041382 151 AKMFKDRNRIVRFHTIRHDRWSSSGVNLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGT 230 (600)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~w~~~~v~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGt 230 (600)
+.++..+++..+++..- ..|. -.+..++.+|++.....+..+.+...+..|... +. ....+++|+|||||
T Consensus 41 ~~~i~~~~~q~~~~~~~-~~s~--i~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~---~~----~~~~~~~l~G~~Gt 110 (244)
T PRK07952 41 SAALERENRAMKMQRTF-NRSG--IRPLHQNCSFENYRVECEGQMNALSKARQYVEE---FD----GNIASFIFSGKPGT 110 (244)
T ss_pred HHHHHHHHHHHHHHHHH-HHcC--CCccccCCccccccCCCchHHHHHHHHHHHHHh---hc----cCCceEEEECCCCC
Confidence 33455555554444331 1333 224556789999865544444455555555432 11 11248999999999
Q ss_pred CHHHHHHHHHHHc---CCcEEEEecCccCC---------hhHHHHHHhhCCCcceeeecchhhh
Q 041382 231 GKSSLIAAMANYM---NYDIYNLNLSVVTS---------DSSLEYLLLHVPNRSILVVEDIDCS 282 (600)
Q Consensus 231 GKTsla~alA~~l---~~~~~~l~~~~~~~---------~~~l~~~~~~~~~~sIL~iDeiD~l 282 (600)
|||+|+.|||+++ +..++.++..++.. +.....++.......+|+|||+++.
T Consensus 111 GKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~ 174 (244)
T PRK07952 111 GKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQ 174 (244)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCC
Confidence 9999999999988 67788887766541 1123345555667889999999875
No 172
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.97 E-value=2.9e-09 Score=95.69 Aligned_cols=118 Identities=25% Similarity=0.330 Sum_probs=72.6
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcCCc---EEEEecCccCC--------------------hhHHHHHHhhCC--Ccce
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMNYD---IYNLNLSVVTS--------------------DSSLEYLLLHVP--NRSI 273 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~~~---~~~l~~~~~~~--------------------~~~l~~~~~~~~--~~sI 273 (600)
++.++|+||||||||++++++|..+... ++.+++..... .......+..+. .+.|
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 3579999999999999999999999775 88887765421 123333333332 3599
Q ss_pred eeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHH--HHhhcCccccCCCeeEEEEecCC-cCcCCHHHHhcCCcceE
Q 041382 274 LVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGL--LNAIDGLLCCCGDEKITVFTTNY-KDRIDPALLRAGRMDRH 350 (600)
Q Consensus 274 L~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~l--L~~ldg~~~~~~~~~iiI~TTN~-~~~Ld~aLlrpgRfd~~ 350 (600)
|+|||++.+..... ....... ........ ......+|+++|. ....+..+.+ |++.+
T Consensus 82 iiiDei~~~~~~~~----------------~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~ 141 (148)
T smart00382 82 LILDEITSLLDAEQ----------------EALLLLLEELRLLLLLK--SEKNLTVILTTNDEKDLGPALLRR--RFDRR 141 (148)
T ss_pred EEEECCcccCCHHH----------------HHHHHhhhhhHHHHHHH--hcCCCEEEEEeCCCccCchhhhhh--ccceE
Confidence 99999998853100 0000000 00000111 1134778888886 4444555555 99999
Q ss_pred EEeCCC
Q 041382 351 INLSYC 356 (600)
Q Consensus 351 I~~~~p 356 (600)
+.++.+
T Consensus 142 ~~~~~~ 147 (148)
T smart00382 142 IVLLLI 147 (148)
T ss_pred EEecCC
Confidence 888765
No 173
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.96 E-value=6.8e-09 Score=115.85 Aligned_cols=129 Identities=18% Similarity=0.221 Sum_probs=85.5
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEEE----ecCccCC---------hhHHHHHHhhCCCcceeeecchhhhhhhhc
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNL----NLSVVTS---------DSSLEYLLLHVPNRSILVVEDIDCSIKLQN 287 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~l----~~~~~~~---------~~~l~~~~~~~~~~sIL~iDeiD~l~~~~~ 287 (600)
.+||+|+||||||++++++++......+.. ++..+.. ...++.-........+++|||+|.+-.
T Consensus 238 ~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~--- 314 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVLADNGVCCIDEFDKMDD--- 314 (509)
T ss_pred eEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCccEEecCCCEEEEechhhCCH---
Confidence 699999999999999999999886554432 2211211 000111001113568999999998732
Q ss_pred cccCCCCCCCCCCCChHHHHHHHHHhhcCc---------cccCCCeeEEEEecCCcC-------------cCCHHHHhcC
Q 041382 288 RESQKGDEPADSYRGPQVTLAGLLNAIDGL---------LCCCGDEKITVFTTNYKD-------------RIDPALLRAG 345 (600)
Q Consensus 288 r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~---------~~~~~~~~iiI~TTN~~~-------------~Ld~aLlrpg 345 (600)
...+.|+..|+.- ...-+....+|+|+|..+ .|++++++
T Consensus 315 -----------------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs-- 375 (509)
T smart00350 315 -----------------SDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS-- 375 (509)
T ss_pred -----------------HHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--
Confidence 2345566666432 111223467889999653 59999999
Q ss_pred CcceEEEe-CCCCHHHHHHHHHHhcCc
Q 041382 346 RMDRHINL-SYCTFSTFKQLAANYLDI 371 (600)
Q Consensus 346 Rfd~~I~~-~~p~~e~r~~il~~~l~~ 371 (600)
|||..+.+ ++|+.+...+|++..+..
T Consensus 376 RFdLi~~~~d~~~~~~d~~i~~~i~~~ 402 (509)
T smart00350 376 RFDLLFVVLDEVDEERDRELAKHVVDL 402 (509)
T ss_pred ceeeEEEecCCCChHHHHHHHHHHHHh
Confidence 99986555 899999999999876643
No 174
>PRK08116 hypothetical protein; Validated
Probab=98.94 E-value=7.3e-09 Score=106.16 Aligned_cols=123 Identities=21% Similarity=0.303 Sum_probs=79.2
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCCh----------hHHHHHHhhCCCcceeeecchhhhhhh
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTSD----------SSLEYLLLHVPNRSILVVEDIDCSIKL 285 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~~----------~~l~~~~~~~~~~sIL~iDeiD~l~~~ 285 (600)
+.|++|+||||||||+|+.|+|+++ +.+++.++...+... .....++.......+|+|||+...-
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~-- 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGAER-- 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccCCC--
Confidence 4589999999999999999999986 778888886654311 1122344445566799999995321
Q ss_pred hccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCc-Cc----CCHHHHhcCCc---ceEEEeCCCC
Q 041382 286 QNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYK-DR----IDPALLRAGRM---DRHINLSYCT 357 (600)
Q Consensus 286 ~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~-~~----Ld~aLlrpgRf---d~~I~~~~p~ 357 (600)
........|.+.++..... +..+|+|||.+ +. +++.+.+ |+ ...|.++.++
T Consensus 192 ----------------~t~~~~~~l~~iin~r~~~---~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d 250 (268)
T PRK08116 192 ----------------DTEWAREKVYNIIDSRYRK---GLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKS 250 (268)
T ss_pred ----------------CCHHHHHHHHHHHHHHHHC---CCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcC
Confidence 1123445566666654322 24588888853 33 4677777 74 3456666666
Q ss_pred HHHHHHHHH
Q 041382 358 FSTFKQLAA 366 (600)
Q Consensus 358 ~e~r~~il~ 366 (600)
. |..+.+
T Consensus 251 ~--R~~~~~ 257 (268)
T PRK08116 251 Y--RKEIAK 257 (268)
T ss_pred h--hHHHHH
Confidence 5 444444
No 175
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.93 E-value=2.8e-09 Score=103.63 Aligned_cols=46 Identities=30% Similarity=0.522 Sum_probs=36.1
Q ss_pred CccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc
Q 041382 183 TFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 183 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l 243 (600)
.|.+|+|++..|..+.-... | ++++||+||||||||++|++++..+
T Consensus 1 Df~dI~GQe~aKrAL~iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 38899999999998865442 2 3599999999999999999999866
No 176
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.93 E-value=3.3e-08 Score=93.72 Aligned_cols=112 Identities=17% Similarity=0.277 Sum_probs=81.1
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHcC-----------------------CcEEEEecCcc---CChhHHHHHHhhCC--
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYMN-----------------------YDIYNLNLSVV---TSDSSLEYLLLHVP-- 269 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l~-----------------------~~~~~l~~~~~---~~~~~l~~~~~~~~-- 269 (600)
.+..+||+||+|+||+++|.++|+.+- .+++.++.... .....++.+.....
T Consensus 18 l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~ 97 (162)
T PF13177_consen 18 LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFLSLS 97 (162)
T ss_dssp --SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHCTSS
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHHHHHHHHHHH
Confidence 356899999999999999999999651 24666655443 34566776665553
Q ss_pred ----CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcC
Q 041382 270 ----NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAG 345 (600)
Q Consensus 270 ----~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpg 345 (600)
..-|++|||+|.+-. ...+.||..|+... ...++|++|+.++.|.|.+++
T Consensus 98 ~~~~~~KviiI~~ad~l~~--------------------~a~NaLLK~LEepp----~~~~fiL~t~~~~~il~TI~S-- 151 (162)
T PF13177_consen 98 PSEGKYKVIIIDEADKLTE--------------------EAQNALLKTLEEPP----ENTYFILITNNPSKILPTIRS-- 151 (162)
T ss_dssp -TTSSSEEEEEETGGGS-H--------------------HHHHHHHHHHHSTT----TTEEEEEEES-GGGS-HHHHT--
T ss_pred HhcCCceEEEeehHhhhhH--------------------HHHHHHHHHhcCCC----CCEEEEEEECChHHChHHHHh--
Confidence 345999999998842 46688999988653 458999999999999999999
Q ss_pred CcceEEEeCCC
Q 041382 346 RMDRHINLSYC 356 (600)
Q Consensus 346 Rfd~~I~~~~p 356 (600)
|+ ..|.|++.
T Consensus 152 Rc-~~i~~~~l 161 (162)
T PF13177_consen 152 RC-QVIRFRPL 161 (162)
T ss_dssp TS-EEEEE---
T ss_pred hc-eEEecCCC
Confidence 88 67887754
No 177
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.92 E-value=2.3e-08 Score=105.15 Aligned_cols=64 Identities=22% Similarity=0.291 Sum_probs=51.3
Q ss_pred CCcc-ccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC-------cEEEEec
Q 041382 182 MTFG-TLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY-------DIYNLNL 252 (600)
Q Consensus 182 ~~f~-~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~-------~~~~l~~ 252 (600)
.-|+ +++|.++.++++.+.+..... .. ...++.++|.|||||||||+|+++|+.++. ++|.+..
T Consensus 47 ~~F~~~~~G~~~~i~~lv~~l~~~a~------g~-~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 47 RFFDHDFFGMEEAIERFVNYFKSAAQ------GL-EERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred cccchhccCcHHHHHHHHHHHHHHHh------cC-CCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 4577 899999999999887754432 11 233568899999999999999999999976 8998876
No 178
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.91 E-value=6.7e-09 Score=100.92 Aligned_cols=187 Identities=17% Similarity=0.237 Sum_probs=115.8
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc-C----CcEEEEe
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM-N----YDIYNLN 251 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l-~----~~~~~l~ 251 (600)
+...|.-+.+++|.++..+++.-.. +-|--| ++++.|||||||||-+.++|+++ | --+..++
T Consensus 19 eKYrP~~l~dIVGNe~tv~rl~via-----------~~gnmP--~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELN 85 (333)
T KOG0991|consen 19 EKYRPSVLQDIVGNEDTVERLSVIA-----------KEGNMP--NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELN 85 (333)
T ss_pred HhhCchHHHHhhCCHHHHHHHHHHH-----------HcCCCC--ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhcc
Confidence 8889999999999999888775433 223222 79999999999999999999987 3 2456777
Q ss_pred cCccCChhHHH---HHHhhCC------CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCC
Q 041382 252 LSVVTSDSSLE---YLLLHVP------NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCG 322 (600)
Q Consensus 252 ~~~~~~~~~l~---~~~~~~~------~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~ 322 (600)
.++-.+-.-++ +.|.... +.-|+++||.|++-. . .-..|-..|+-..+.
T Consensus 86 ASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~-----------------g---AQQAlRRtMEiyS~t-- 143 (333)
T KOG0991|consen 86 ASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTA-----------------G---AQQALRRTMEIYSNT-- 143 (333)
T ss_pred CccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhh-----------------H---HHHHHHHHHHHHccc--
Confidence 77665544443 3444432 335999999998742 0 111233333333222
Q ss_pred CeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhhhcCCCHHHHHHHHHh-c
Q 041382 323 DEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLMEKVKVSPAEVAGELMK-A 401 (600)
Q Consensus 323 ~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~~~~~t~a~i~~~l~~-~ 401 (600)
.-+..++|..+++=..+.+ |+. .+.+...+.++ ++.+.+.. .-.+.+.||+.-+...++. .
T Consensus 144 --tRFalaCN~s~KIiEPIQS--RCA-iLRysklsd~q---iL~Rl~~v----------~k~Ekv~yt~dgLeaiifta~ 205 (333)
T KOG0991|consen 144 --TRFALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQ---ILKRLLEV----------AKAEKVNYTDDGLEAIIFTAQ 205 (333)
T ss_pred --chhhhhhcchhhhhhhHHh--hhH-hhhhcccCHHH---HHHHHHHH----------HHHhCCCCCcchHHHhhhhcc
Confidence 3367888988887777776 552 33333333333 22222211 1124567888888777653 3
Q ss_pred CCHHHHHHHHHHHHH
Q 041382 402 KGSKTSLEDFITYLE 416 (600)
Q Consensus 402 ~~~~~al~~l~~~l~ 416 (600)
+|-..|+..+..-+.
T Consensus 206 GDMRQalNnLQst~~ 220 (333)
T KOG0991|consen 206 GDMRQALNNLQSTVN 220 (333)
T ss_pred chHHHHHHHHHHHhc
Confidence 566666666665544
No 179
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.91 E-value=2.1e-08 Score=105.79 Aligned_cols=125 Identities=15% Similarity=0.154 Sum_probs=88.3
Q ss_pred CCCcceeeeCCCCCCHHHHHHHHHHHcCCc-------------------------EEEEecC------------------
Q 041382 217 VWKRGYLLYGPPGTGKSSLIAAMANYMNYD-------------------------IYNLNLS------------------ 253 (600)
Q Consensus 217 ~~~rgiLL~GppGtGKTsla~alA~~l~~~-------------------------~~~l~~~------------------ 253 (600)
..+.+|||+||+|+||+++|.++|+.+... ++.+...
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 456799999999999999999999987321 2222111
Q ss_pred -----------ccCChhHHHHHHhhCC------CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcC
Q 041382 254 -----------VVTSDSSLEYLLLHVP------NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDG 316 (600)
Q Consensus 254 -----------~~~~~~~l~~~~~~~~------~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg 316 (600)
....-..++.+..... ..-|++||++|.+- ...-+.||..|+.
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~--------------------~~AaNaLLKtLEE 158 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN--------------------VAAANALLKTLEE 158 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC--------------------HHHHHHHHHHhcC
Confidence 0112234444433332 12366666666652 3466889999885
Q ss_pred ccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHh
Q 041382 317 LLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANY 368 (600)
Q Consensus 317 ~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~ 368 (600)
. +.++++|++|++++.|.|.+++ |+ ..|.|++|+.++..+.+...
T Consensus 159 P----p~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 159 P----PPGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred C----CcCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 3 4568999999999999999999 99 79999999999988877653
No 180
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.87 E-value=3.2e-08 Score=109.74 Aligned_cols=171 Identities=19% Similarity=0.257 Sum_probs=107.8
Q ss_pred CCcccccccccCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCc
Q 041382 167 RHDRWSSSGVNLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYD 246 (600)
Q Consensus 167 ~~~~w~~~~v~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~ 246 (600)
+...|. +...|.+.++|+..++..++|..++...+. +..+++-+||+||||||||++++.+|+++|..
T Consensus 5 ~~~~W~----~ky~P~~~~eLavhkkKv~eV~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~ 72 (519)
T PF03215_consen 5 ESEPWV----EKYAPKTLDELAVHKKKVEEVRSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFE 72 (519)
T ss_pred ccCccc----hhcCCCCHHHhhccHHHHHHHHHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 445787 889999999999999988888888875432 33445678899999999999999999999988
Q ss_pred EEEEe-cCcc----------CCh-----------hHHHHH-HhhC-------------CCcceeeecchhhhhhhhcccc
Q 041382 247 IYNLN-LSVV----------TSD-----------SSLEYL-LLHV-------------PNRSILVVEDIDCSIKLQNRES 290 (600)
Q Consensus 247 ~~~l~-~~~~----------~~~-----------~~l~~~-~~~~-------------~~~sIL~iDeiD~l~~~~~r~~ 290 (600)
+..-. ...+ .+. ..+..+ +... .++.||+|||+-.++.
T Consensus 73 v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~------ 146 (519)
T PF03215_consen 73 VQEWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFH------ 146 (519)
T ss_pred eEEecCCCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccc------
Confidence 77642 1110 000 011111 1111 2467999999976542
Q ss_pred CCCCCCCCCCCChHHHHHHHHHhhcCccccCCC-eeEEEEe-c------CCcC--------cCCHHHHhcCCcceEEEeC
Q 041382 291 QKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGD-EKITVFT-T------NYKD--------RIDPALLRAGRMDRHINLS 354 (600)
Q Consensus 291 ~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~-~~iiI~T-T------N~~~--------~Ld~aLlrpgRfd~~I~~~ 354 (600)
......-..|...+.. .+. .+|||+| + |... .+++.++.-.++ .+|.|.
T Consensus 147 ----------~~~~~f~~~L~~~l~~----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FN 211 (519)
T PF03215_consen 147 ----------RDTSRFREALRQYLRS----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFN 211 (519)
T ss_pred ----------hhHHHHHHHHHHHHHc----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEec
Confidence 1111222222333332 112 5777777 1 1111 467888764455 589998
Q ss_pred CCCHHHHHHHHHHhcC
Q 041382 355 YCTFSTFKQLAANYLD 370 (600)
Q Consensus 355 ~p~~e~r~~il~~~l~ 370 (600)
+-.....+..+++.+.
T Consensus 212 pIa~T~mkKaL~rI~~ 227 (519)
T PF03215_consen 212 PIAPTFMKKALKRILK 227 (519)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8888776666666554
No 181
>PRK08181 transposase; Validated
Probab=98.86 E-value=7.6e-09 Score=105.72 Aligned_cols=64 Identities=25% Similarity=0.463 Sum_probs=49.2
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCC-------hhHHHHHHhhCCCcceeeecchhhh
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTS-------DSSLEYLLLHVPNRSILVVEDIDCS 282 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~-------~~~l~~~~~~~~~~sIL~iDeiD~l 282 (600)
+.+++|+||||||||+|+.|+|+++ |..++.++...+.. +..+...+....++.+|+|||++..
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~ 179 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYV 179 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccc
Confidence 3589999999999999999999865 67787777655532 1234455566677889999999865
No 182
>PRK12377 putative replication protein; Provisional
Probab=98.85 E-value=1.4e-08 Score=102.65 Aligned_cols=115 Identities=23% Similarity=0.353 Sum_probs=72.4
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCC--------hhHHHHHHhhCCCcceeeecchhhhhhhhcc
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTS--------DSSLEYLLLHVPNRSILVVEDIDCSIKLQNR 288 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~--------~~~l~~~~~~~~~~sIL~iDeiD~l~~~~~r 288 (600)
.+++|+||||||||+|+.|||+++ +..++.++..++.. .......+.......+|+|||++....
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~~---- 177 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQRE---- 177 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCC----
Confidence 589999999999999999999987 56777777665532 112334566667889999999975421
Q ss_pred ccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCc-C----cCCHHHHhcCCcc----eEEEeCCCC
Q 041382 289 ESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYK-D----RIDPALLRAGRMD----RHINLSYCT 357 (600)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~-~----~Ld~aLlrpgRfd----~~I~~~~p~ 357 (600)
... ....|.+.++.-.. ...-+|+|||.. + .++..+++ |+- ..|.|.-++
T Consensus 178 -----------s~~---~~~~l~~ii~~R~~---~~~ptiitSNl~~~~l~~~~~~ri~d--Rl~~~~~~~v~~~g~s 236 (248)
T PRK12377 178 -----------TKN---EQVVLNQIIDRRTA---SMRSVGMLTNLNHEAMSTLLGERVMD--RMTMNGGRWVNFNWES 236 (248)
T ss_pred -----------CHH---HHHHHHHHHHHHHh---cCCCEEEEcCCCHHHHHHHhhHHHHH--HHhhCCCeEEEeCCcC
Confidence 111 22334445544322 124578899942 2 34556666 552 235555444
No 183
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.85 E-value=9.5e-09 Score=107.14 Aligned_cols=97 Identities=27% Similarity=0.350 Sum_probs=65.8
Q ss_pred CCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccC-
Q 041382 181 PMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVT- 256 (600)
Q Consensus 181 p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~- 256 (600)
..+|+++.....-+..+......|+.. |.. | +.++|++||||||||||+|+.|+|+++ |..+..+....+.
T Consensus 123 ~atf~~~~~~~~~~~~~~~~~~~fi~~---~~~-~-~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~ 197 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMAALDFLEA---YPP-G-EKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIR 197 (306)
T ss_pred cCcHHHhcCCChHHHHHHHHHHHHHHH---hhc-c-CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHH
Confidence 467777766554444444444445432 111 1 245799999999999999999999988 7778777766543
Q ss_pred ------ChhHHHHHHhhCCCcceeeecchhhh
Q 041382 257 ------SDSSLEYLLLHVPNRSILVVEDIDCS 282 (600)
Q Consensus 257 ------~~~~l~~~~~~~~~~sIL~iDeiD~l 282 (600)
++..+...+.......+|+||||..-
T Consensus 198 ~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e 229 (306)
T PRK08939 198 ELKNSISDGSVKEKIDAVKEAPVLMLDDIGAE 229 (306)
T ss_pred HHHHHHhcCcHHHHHHHhcCCCEEEEecCCCc
Confidence 12234455666678899999999643
No 184
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.84 E-value=2.4e-08 Score=95.10 Aligned_cols=127 Identities=19% Similarity=0.200 Sum_probs=80.4
Q ss_pred cccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCChhHHHH
Q 041382 187 LVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTSDSSLEY 263 (600)
Q Consensus 187 l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~~~~l~~ 263 (600)
++|.....+++++.+...... +..+||+|++||||+.+|++|-+.. +.||+.++|+.+..+.--..
T Consensus 1 liG~s~~m~~~~~~~~~~a~~-----------~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASS-----------DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTS-----------TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCC-----------CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhh
Confidence 466667777777777655543 3589999999999999999999865 47999999998855443345
Q ss_pred HHhhC-----------------CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCc-cccC----
Q 041382 264 LLLHV-----------------PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGL-LCCC---- 321 (600)
Q Consensus 264 ~~~~~-----------------~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~-~~~~---- 321 (600)
+|... .....||||||+.+-. ..-..|++.|+.- ....
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~--------------------~~Q~~Ll~~l~~~~~~~~g~~~ 129 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLPP--------------------ELQAKLLRVLEEGKFTRLGSDK 129 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-H--------------------HHHHHHHHHHHHSEEECCTSSS
T ss_pred hhccccccccccccccCCceeeccceEEeecchhhhHH--------------------HHHHHHHHHHhhchhccccccc
Confidence 55432 2457999999999843 2445566666521 1111
Q ss_pred --CCeeEEEEecCCcCcCCHHHHhcCCc
Q 041382 322 --GDEKITVFTTNYKDRIDPALLRAGRM 347 (600)
Q Consensus 322 --~~~~iiI~TTN~~~~Ld~aLlrpgRf 347 (600)
.-++-||+||+.. |. .+...|+|
T Consensus 130 ~~~~~~RiI~st~~~--l~-~~v~~g~f 154 (168)
T PF00158_consen 130 PVPVDVRIIASTSKD--LE-ELVEQGRF 154 (168)
T ss_dssp EEE--EEEEEEESS---HH-HHHHTTSS
T ss_pred cccccceEEeecCcC--HH-HHHHcCCC
Confidence 1246778888752 22 44555677
No 185
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.83 E-value=3.1e-08 Score=104.58 Aligned_cols=156 Identities=22% Similarity=0.244 Sum_probs=107.6
Q ss_pred CCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCc--------------
Q 041382 181 PMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYD-------------- 246 (600)
Q Consensus 181 p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~-------------- 246 (600)
..+|..++|++..|..+.-....+ --.|+|+-|+.|||||++++|+|..|.--
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av~P-------------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAVDP-------------QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhccc-------------ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 457889999999998886543322 22499999999999999999999987321
Q ss_pred --------------------------EEEEecCcc----CChhHHHHHHhhC-----------CCcceeeecchhhhhhh
Q 041382 247 --------------------------IYNLNLSVV----TSDSSLEYLLLHV-----------PNRSILVVEDIDCSIKL 285 (600)
Q Consensus 247 --------------------------~~~l~~~~~----~~~~~l~~~~~~~-----------~~~sIL~iDeiD~l~~~ 285 (600)
++.+.++.. .+.-++.+.+..- .++.||+|||+..|-+
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d- 158 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDD- 158 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccH-
Confidence 111111111 1111223333221 2568999999987732
Q ss_pred hccccCCCCCCCCCCCChHHHHHHHHHhh---------cCccccCCCeeEEEEecC-CcCcCCHHHHhcCCcceEEEeCC
Q 041382 286 QNRESQKGDEPADSYRGPQVTLAGLLNAI---------DGLLCCCGDEKITVFTTN-YKDRIDPALLRAGRMDRHINLSY 355 (600)
Q Consensus 286 ~~r~~~~~~~~~~~~~~~~~~ls~lL~~l---------dg~~~~~~~~~iiI~TTN-~~~~Ld~aLlrpgRfd~~I~~~~ 355 (600)
.....||+.+ +|+.-...-.+++|+|+| ....|-|-|+. ||+.+|.+.+
T Consensus 159 -------------------~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~ 217 (423)
T COG1239 159 -------------------HLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHY 217 (423)
T ss_pred -------------------HHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccC
Confidence 3556667665 344434445689999999 55789999999 9999999966
Q ss_pred C-CHHHHHHHHHHhcCc
Q 041382 356 C-TFSTFKQLAANYLDI 371 (600)
Q Consensus 356 p-~~e~r~~il~~~l~~ 371 (600)
| +.++|.+|..+-+..
T Consensus 218 ~~~~~~rv~Ii~r~~~f 234 (423)
T COG1239 218 PLDLEERVEIIRRRLAF 234 (423)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 6 668899999887765
No 186
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.82 E-value=2.1e-08 Score=113.44 Aligned_cols=128 Identities=20% Similarity=0.178 Sum_probs=90.3
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCC--cEEEEecCcc----CChhHHHHHHhh-----------CCCcceeeecchhhh
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNY--DIYNLNLSVV----TSDSSLEYLLLH-----------VPNRSILVVEDIDCS 282 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~--~~~~l~~~~~----~~~~~l~~~~~~-----------~~~~sIL~iDeiD~l 282 (600)
+|+||.|+||||||+++++++..+.. +|+.++++.. .+.-.+...+.. .....+||||||+.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 48999999999999999999998864 5777775322 122222221111 124579999999987
Q ss_pred hhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCc---------cccCCCeeEEEEecCCcC---cCCHHHHhcCCcceE
Q 041382 283 IKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGL---------LCCCGDEKITVFTTNYKD---RIDPALLRAGRMDRH 350 (600)
Q Consensus 283 ~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~---------~~~~~~~~iiI~TTN~~~---~Ld~aLlrpgRfd~~ 350 (600)
-+ .+.+.|+..|+.- .......+.+|+|+|..+ .|+++|+. ||+.+
T Consensus 97 ~~--------------------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~ 154 (589)
T TIGR02031 97 DD--------------------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALH 154 (589)
T ss_pred CH--------------------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCe
Confidence 43 4567788877521 111223478889999765 79999999 99999
Q ss_pred EEeCCC-CHHHHHHHHHHhc
Q 041382 351 INLSYC-TFSTFKQLAANYL 369 (600)
Q Consensus 351 I~~~~p-~~e~r~~il~~~l 369 (600)
|.+.++ +.++|.+|++.++
T Consensus 155 v~~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 155 VSLEDVASQDLRVEIVRRER 174 (589)
T ss_pred eecCCCCCHHHHHHHHHHHH
Confidence 988654 6677899998876
No 187
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.82 E-value=6.5e-08 Score=102.06 Aligned_cols=154 Identities=18% Similarity=0.167 Sum_probs=102.4
Q ss_pred CccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCChh
Q 041382 183 TFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTSDS 259 (600)
Q Consensus 183 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~~~ 259 (600)
.|++++|.....+.+.+.+...... ...+||+|++||||+++|+++-... +.+++.++|..+.. .
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~-----------~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~-~ 71 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPL-----------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE-N 71 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCH-H
Confidence 4778999998888888888766542 3479999999999999999997765 46899999998753 3
Q ss_pred HHHH-HHh-----------------hCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCcc-cc
Q 041382 260 SLEY-LLL-----------------HVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLL-CC 320 (600)
Q Consensus 260 ~l~~-~~~-----------------~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~-~~ 320 (600)
.+.. +|. .......|||||||.+-. .....|++.++.-. ..
T Consensus 72 ~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~--------------------~~Q~~L~~~l~~~~~~~ 131 (326)
T PRK11608 72 LLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPM--------------------LVQEKLLRVIEYGELER 131 (326)
T ss_pred HHHHHHccccccccCCcccccCCchhccCCCeEEeCChhhCCH--------------------HHHHHHHHHHhcCcEEe
Confidence 3332 221 122457899999998842 23345666664321 11
Q ss_pred CC------CeeEEEEecCCc-------CcCCHHHHhcCCc-ceEEEeCCCCH--HHHHHHHHHhcC
Q 041382 321 CG------DEKITVFTTNYK-------DRIDPALLRAGRM-DRHINLSYCTF--STFKQLAANYLD 370 (600)
Q Consensus 321 ~~------~~~iiI~TTN~~-------~~Ld~aLlrpgRf-d~~I~~~~p~~--e~r~~il~~~l~ 370 (600)
.+ .++-||+||+.. ..+.+.|.. || ...|++|+... ++...|+..|+.
T Consensus 132 ~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl~ 195 (326)
T PRK11608 132 VGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHFAI 195 (326)
T ss_pred CCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHHHH
Confidence 11 136677777642 456677887 77 45677766644 334556666654
No 188
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.81 E-value=1.1e-07 Score=101.57 Aligned_cols=191 Identities=17% Similarity=0.212 Sum_probs=108.9
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc-----CCcEEEEe
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM-----NYDIYNLN 251 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l-----~~~~~~l~ 251 (600)
.+.+.-+|++.+..+.-....- ....... .-|. .-.-++||||.|.|||.|++|++++. +..++++.
T Consensus 79 ~l~~~ytFdnFv~g~~N~~A~a-a~~~va~------~~g~-~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~ 150 (408)
T COG0593 79 GLNPKYTFDNFVVGPSNRLAYA-AAKAVAE------NPGG-AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT 150 (408)
T ss_pred cCCCCCchhheeeCCchHHHHH-HHHHHHh------ccCC-cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc
Confidence 3455568999765554322211 1111111 1122 22368999999999999999999987 23455555
Q ss_pred cCccCCh-------hHHHHHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCe
Q 041382 252 LSVVTSD-------SSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDE 324 (600)
Q Consensus 252 ~~~~~~~-------~~l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~ 324 (600)
...+... .... -|.+.-+--+++||||+.+.+ + . .+-.+|.+.+..+....+
T Consensus 151 se~f~~~~v~a~~~~~~~-~Fk~~y~~dlllIDDiq~l~g--k-------------~---~~qeefFh~FN~l~~~~k-- 209 (408)
T COG0593 151 SEDFTNDFVKALRDNEME-KFKEKYSLDLLLIDDIQFLAG--K-------------E---RTQEEFFHTFNALLENGK-- 209 (408)
T ss_pred HHHHHHHHHHHHHhhhHH-HHHHhhccCeeeechHhHhcC--C-------------h---hHHHHHHHHHHHHHhcCC--
Confidence 4433210 1111 122222445999999999864 1 1 122334444444433322
Q ss_pred eEEEEecCCcCcC---CHHHHhcCCc--ceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHH-HhhhcCCCHHHHHHHH
Q 041382 325 KITVFTTNYKDRI---DPALLRAGRM--DRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEK-LMEKVKVSPAEVAGEL 398 (600)
Q Consensus 325 ~iiI~TTN~~~~L---d~aLlrpgRf--d~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~-l~~~~~~t~a~i~~~l 398 (600)
.|++.+-..|..+ .|.|.+ || +..+.+.+|+.+.|..|++......+....+++.. ++....-+-.++.+.|
T Consensus 210 qIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL 287 (408)
T COG0593 210 QIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGAL 287 (408)
T ss_pred EEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHH
Confidence 4444444455554 599999 87 46788999999999999998666555554444433 3333344445554444
No 189
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.80 E-value=1.5e-07 Score=96.80 Aligned_cols=63 Identities=30% Similarity=0.408 Sum_probs=46.3
Q ss_pred cccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcC--CcEEEEecCcc
Q 041382 185 GTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMN--YDIYNLNLSVV 255 (600)
Q Consensus 185 ~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~--~~~~~l~~~~~ 255 (600)
|-++|+.+.+++.==.+.. . +-|+-.++|+|+.||||||||.||-+||++|| .||..++.+.+
T Consensus 39 dG~VGQ~~AReAaGvIv~m-i-------k~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEi 103 (450)
T COG1224 39 DGLVGQEEAREAAGVIVKM-I-------KQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEI 103 (450)
T ss_pred CcccchHHHHHhhhHHHHH-H-------HhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeecccee
Confidence 5688988887764333222 2 23555678999999999999999999999996 56666666555
No 190
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.80 E-value=1.1e-07 Score=99.13 Aligned_cols=64 Identities=30% Similarity=0.413 Sum_probs=44.6
Q ss_pred ccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcC--CcEEEEecCcc
Q 041382 184 FGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMN--YDIYNLNLSVV 255 (600)
Q Consensus 184 f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~--~~~~~l~~~~~ 255 (600)
.+-++|+.+.+++.--.+..-.. |+--+|++||.||||||||.||-+||++|| .||..++.+.+
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~--------~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEi 88 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKE--------GKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEI 88 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHT--------T--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG
T ss_pred cccccChHHHHHHHHHHHHHHhc--------ccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEccccee
Confidence 46799999998887555443322 334467999999999999999999999996 56776665555
No 191
>PRK04132 replication factor C small subunit; Provisional
Probab=98.79 E-value=6.7e-08 Score=111.94 Aligned_cols=154 Identities=10% Similarity=0.127 Sum_probs=110.9
Q ss_pred eeeeC--CCCCCHHHHHHHHHHHc-----CCcEEEEecCccCChhHHHHHHhhC----C----Ccceeeecchhhhhhhh
Q 041382 222 YLLYG--PPGTGKSSLIAAMANYM-----NYDIYNLNLSVVTSDSSLEYLLLHV----P----NRSILVVEDIDCSIKLQ 286 (600)
Q Consensus 222 iLL~G--ppGtGKTsla~alA~~l-----~~~~~~l~~~~~~~~~~l~~~~~~~----~----~~sIL~iDeiD~l~~~~ 286 (600)
.+..| |++.||||+|.|+|+++ +.+++.+|+++..+...++..+... + ..-|++|||+|.+-.
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~-- 644 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQ-- 644 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCH--
Confidence 46669 99999999999999998 5689999999877777777665432 1 235999999998832
Q ss_pred ccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHH
Q 041382 287 NRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAA 366 (600)
Q Consensus 287 ~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~ 366 (600)
...+.|+..|+... ....+|++||.+..+.++|++ |+ ..+.|++|+.++....+.
T Consensus 645 ------------------~AQnALLk~lEep~----~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~ 699 (846)
T PRK04132 645 ------------------DAQQALRRTMEMFS----SNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLR 699 (846)
T ss_pred ------------------HHHHHHHHHhhCCC----CCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHH
Confidence 24466888887542 347899999999999999999 88 799999999988877777
Q ss_pred HhcCcCCCccHHHHHHHhhhcCCCHHHHHHHH-HhcCCHHHHHHHHHHHH
Q 041382 367 NYLDINDHDLYCHIEKLMEKVKVSPAEVAGEL-MKAKGSKTSLEDFITYL 415 (600)
Q Consensus 367 ~~l~~~~~~~~~~i~~l~~~~~~t~a~i~~~l-~~~~~~~~al~~l~~~l 415 (600)
.....++ ..+++..+...+ ...+|...|+..+..+.
T Consensus 700 ~I~~~Eg-------------i~i~~e~L~~Ia~~s~GDlR~AIn~Lq~~~ 736 (846)
T PRK04132 700 YIAENEG-------------LELTEEGLQAILYIAEGDMRRAINILQAAA 736 (846)
T ss_pred HHHHhcC-------------CCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6554322 123333333333 23356666666665443
No 192
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.78 E-value=8.7e-08 Score=107.86 Aligned_cols=157 Identities=20% Similarity=0.204 Sum_probs=103.6
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccC
Q 041382 180 HPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVT 256 (600)
Q Consensus 180 ~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~ 256 (600)
...+|+.++|.....+++.+.+...... ...+||+|++||||+++|++|.... +.+++.+||..+.
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~~~~a~~-----------~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQARVVARS-----------NSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred ccCccCceEECCHHHHHHHHHHHHHhCc-----------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 3458999999999988888888665432 3479999999999999999999875 5799999999885
Q ss_pred ChhHHHH-HHhh-----------------CCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCc-
Q 041382 257 SDSSLEY-LLLH-----------------VPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGL- 317 (600)
Q Consensus 257 ~~~~l~~-~~~~-----------------~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~- 317 (600)
. ..+.. +|.. ......|||||||.+-. .....|+..++.-
T Consensus 260 ~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~--------------------~~Q~~Ll~~l~~~~ 318 (534)
T TIGR01817 260 E-TLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISP--------------------AFQAKLLRVLQEGE 318 (534)
T ss_pred H-HHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCH--------------------HHHHHHHHHHhcCc
Confidence 4 33332 2221 12467999999998843 2334566666432
Q ss_pred cccCC------CeeEEEEecCCc-------CcCCHHHHhcCCc-ceEEEeCCCC--HHHHHHHHHHhcC
Q 041382 318 LCCCG------DEKITVFTTNYK-------DRIDPALLRAGRM-DRHINLSYCT--FSTFKQLAANYLD 370 (600)
Q Consensus 318 ~~~~~------~~~iiI~TTN~~-------~~Ld~aLlrpgRf-d~~I~~~~p~--~e~r~~il~~~l~ 370 (600)
....+ .++-+|+||+.. ..+.+.|.. |+ ...|.+|+.. .+....|+..|+.
T Consensus 319 ~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~ 385 (534)
T TIGR01817 319 FERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLE 385 (534)
T ss_pred EEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHH
Confidence 11111 135677777642 223444444 44 3467777765 3556667777764
No 193
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.77 E-value=7e-08 Score=101.86 Aligned_cols=149 Identities=19% Similarity=0.196 Sum_probs=93.9
Q ss_pred ccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCChhHHH-H
Q 041382 188 VMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTSDSSLE-Y 263 (600)
Q Consensus 188 ~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~~~~l~-~ 263 (600)
+|.....+.+.+.+...... ...+||+|++||||+++|++|-... +.+++.+||..+... .+. .
T Consensus 2 iG~S~~m~~~~~~~~~~a~~-----------~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~-~l~~~ 69 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLAPL-----------DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSEN-LLDSE 69 (329)
T ss_pred CcCCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChH-HHHHH
Confidence 45555666666666554432 3479999999999999999997765 479999999987532 232 2
Q ss_pred HHh-----------------hCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCcc-c------
Q 041382 264 LLL-----------------HVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLL-C------ 319 (600)
Q Consensus 264 ~~~-----------------~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~-~------ 319 (600)
+|. .......|||||||.+-. .....|+..++.-. .
T Consensus 70 lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~--------------------~~Q~~Ll~~l~~~~~~~~g~~~ 129 (329)
T TIGR02974 70 LFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATASL--------------------LVQEKLLRVIEYGEFERVGGSQ 129 (329)
T ss_pred HhccccccccCcccccCCchhhCCCCEEEeCChHhCCH--------------------HHHHHHHHHHHcCcEEecCCCc
Confidence 321 122468999999998832 23345666654221 1
Q ss_pred cCCCeeEEEEecCCc-------CcCCHHHHhcCCcc-eEEEeCCCC--HHHHHHHHHHhcC
Q 041382 320 CCGDEKITVFTTNYK-------DRIDPALLRAGRMD-RHINLSYCT--FSTFKQLAANYLD 370 (600)
Q Consensus 320 ~~~~~~iiI~TTN~~-------~~Ld~aLlrpgRfd-~~I~~~~p~--~e~r~~il~~~l~ 370 (600)
....++-+|+|||.. ..+.+.|.. |+. ..|++|+.. .++...|+..|+.
T Consensus 130 ~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~~~~i~lPpLReR~eDI~~L~~~fl~ 188 (329)
T TIGR02974 130 TLQVDVRLVCATNADLPALAAEGRFRADLLD--RLAFDVITLPPLRERQEDIMLLAEHFAI 188 (329)
T ss_pred eeccceEEEEechhhHHHHhhcCchHHHHHH--HhcchhcCCCchhhhhhhHHHHHHHHHH
Confidence 111236677887742 345577777 773 456666665 3445556666654
No 194
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.76 E-value=9.2e-08 Score=100.19 Aligned_cols=124 Identities=11% Similarity=0.132 Sum_probs=92.6
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHcCC------------------------cEEEEec--CccCChhHHHHHHhhCC--
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYMNY------------------------DIYNLNL--SVVTSDSSLEYLLLHVP-- 269 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l~~------------------------~~~~l~~--~~~~~~~~l~~~~~~~~-- 269 (600)
.+.++||+||+|+||+++|.++|+.+.. +++.+.. +.-.+...+|.+.....
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~ 102 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQH 102 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhc
Confidence 3569999999999999999999997621 2444432 11224456666554432
Q ss_pred ----CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcC
Q 041382 270 ----NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAG 345 (600)
Q Consensus 270 ----~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpg 345 (600)
..-|++||++|.+-. ..-+.||..|+.- +...++|.+|++++.|.|.+++
T Consensus 103 ~~~g~~KV~iI~~a~~m~~--------------------~AaNaLLKtLEEP----p~~~~fiL~t~~~~~llpTI~S-- 156 (325)
T PRK06871 103 AQQGGNKVVYIQGAERLTE--------------------AAANALLKTLEEP----RPNTYFLLQADLSAALLPTIYS-- 156 (325)
T ss_pred cccCCceEEEEechhhhCH--------------------HHHHHHHHHhcCC----CCCeEEEEEECChHhCchHHHh--
Confidence 235999999998832 4567889888864 4568999999999999999999
Q ss_pred CcceEEEeCCCCHHHHHHHHHHh
Q 041382 346 RMDRHINLSYCTFSTFKQLAANY 368 (600)
Q Consensus 346 Rfd~~I~~~~p~~e~r~~il~~~ 368 (600)
|+ ..+.|++|+.++..+.+...
T Consensus 157 RC-~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 157 RC-QTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred hc-eEEeCCCCCHHHHHHHHHHH
Confidence 98 68999999999887777653
No 195
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.73 E-value=1.4e-07 Score=108.50 Aligned_cols=155 Identities=17% Similarity=0.140 Sum_probs=99.8
Q ss_pred CCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCCh
Q 041382 182 MTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTSD 258 (600)
Q Consensus 182 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~~ 258 (600)
.+|++++|.....+++++.+...... ...+||+|++||||+++|++|.+.. +.+++.+||..+..+
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~~-----------~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAKS-----------SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhCc-----------CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 36889999888888888777665442 2469999999999999999998875 469999999988643
Q ss_pred hHHHHHHhhC--------------CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCcc-ccCC-
Q 041382 259 SSLEYLLLHV--------------PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLL-CCCG- 322 (600)
Q Consensus 259 ~~l~~~~~~~--------------~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~-~~~~- 322 (600)
.--..+|... .....|||||||.+-. .....|+..++.-. ...+
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~--------------------~~Q~~Ll~~l~~~~~~~~~~ 450 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSP--------------------ELQSALLQVLKTGVITRLDS 450 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCH--------------------HHHHHHHHHHhcCcEEeCCC
Confidence 3233444321 2467899999998832 23345666664321 1111
Q ss_pred -----CeeEEEEecCCcCcCCHHHHhcCCc---------ceEEEeCCCCH--HHHHHHHHHhcC
Q 041382 323 -----DEKITVFTTNYKDRIDPALLRAGRM---------DRHINLSYCTF--STFKQLAANYLD 370 (600)
Q Consensus 323 -----~~~iiI~TTN~~~~Ld~aLlrpgRf---------d~~I~~~~p~~--e~r~~il~~~l~ 370 (600)
-++-+|+|||..- ..+...|+| ...|.+|+... ++...|+..|+.
T Consensus 451 ~~~~~~~~riI~~t~~~l---~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~ 511 (638)
T PRK11388 451 RRLIPVDVRVIATTTADL---AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLR 511 (638)
T ss_pred CceEEeeEEEEEeccCCH---HHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHH
Confidence 1356888887531 234444555 44566655543 234456666654
No 196
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=2.7e-07 Score=97.49 Aligned_cols=124 Identities=14% Similarity=0.135 Sum_probs=92.5
Q ss_pred CCCcceeeeCCCCCCHHHHHHHHHHHcCC------------------------cEEEEecC---ccCChhHHHHHHhhCC
Q 041382 217 VWKRGYLLYGPPGTGKSSLIAAMANYMNY------------------------DIYNLNLS---VVTSDSSLEYLLLHVP 269 (600)
Q Consensus 217 ~~~rgiLL~GppGtGKTsla~alA~~l~~------------------------~~~~l~~~---~~~~~~~l~~~~~~~~ 269 (600)
..+.++||+||+|+||+++|.++|..+-. +++.+... ...+...++.+.....
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 34569999999999999999999997721 34444322 1234456666555442
Q ss_pred ------CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHh
Q 041382 270 ------NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLR 343 (600)
Q Consensus 270 ------~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlr 343 (600)
..-|++||++|.+-. ..-+.||..|+.- +...++|.+|++++.|.|.+++
T Consensus 102 ~~~~~g~~kV~iI~~ae~m~~--------------------~AaNaLLKtLEEP----p~~t~fiL~t~~~~~lLpTIrS 157 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALLTD--------------------AAANALLKTLEEP----PENTWFFLACREPARLLATLRS 157 (334)
T ss_pred hccccCCceEEEEcchHhhCH--------------------HHHHHHHHHhcCC----CCCeEEEEEECChhhChHHHHh
Confidence 345999999998832 3567899888864 4568999999999999999999
Q ss_pred cCCcceEEEeCCCCHHHHHHHHHH
Q 041382 344 AGRMDRHINLSYCTFSTFKQLAAN 367 (600)
Q Consensus 344 pgRfd~~I~~~~p~~e~r~~il~~ 367 (600)
|+. .+.|++|+.++..+.+..
T Consensus 158 --RCq-~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 158 --RCR-LHYLAPPPEQYALTWLSR 178 (334)
T ss_pred --ccc-cccCCCCCHHHHHHHHHH
Confidence 984 789999999887776653
No 197
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.72 E-value=1.6e-07 Score=98.14 Aligned_cols=123 Identities=14% Similarity=0.151 Sum_probs=92.5
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHcC-----------------------CcEEEEecC---ccCChhHHHHHHhhCC--
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYMN-----------------------YDIYNLNLS---VVTSDSSLEYLLLHVP-- 269 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l~-----------------------~~~~~l~~~---~~~~~~~l~~~~~~~~-- 269 (600)
.+.++||+||+|+||+++|.++|..+- -+++.+... ...+...++.+.....
T Consensus 24 l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~ 103 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQES 103 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhhC
Confidence 456999999999999999999999762 145555432 1224455665543331
Q ss_pred ----CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcC
Q 041382 270 ----NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAG 345 (600)
Q Consensus 270 ----~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpg 345 (600)
..-|++||++|.+-. ..-+.||..++.. +.+.++|++|++++.|.|.+++
T Consensus 104 ~~~~~~kV~iI~~ae~m~~--------------------~AaNaLLKtLEEP----p~~t~fiL~t~~~~~lLpTI~S-- 157 (319)
T PRK06090 104 SQLNGYRLFVIEPADAMNE--------------------SASNALLKTLEEP----APNCLFLLVTHNQKRLLPTIVS-- 157 (319)
T ss_pred cccCCceEEEecchhhhCH--------------------HHHHHHHHHhcCC----CCCeEEEEEECChhhChHHHHh--
Confidence 235999999998832 3567899888864 3568999999999999999999
Q ss_pred CcceEEEeCCCCHHHHHHHHHH
Q 041382 346 RMDRHINLSYCTFSTFKQLAAN 367 (600)
Q Consensus 346 Rfd~~I~~~~p~~e~r~~il~~ 367 (600)
|+ ..+.|++|+.++..+.+..
T Consensus 158 RC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 158 RC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred cc-eeEeCCCCCHHHHHHHHHH
Confidence 98 6999999999988777764
No 198
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=2.4e-07 Score=99.40 Aligned_cols=135 Identities=20% Similarity=0.246 Sum_probs=95.8
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCcEEEEe-cCccC------ChhHHHHHHhhCC--Ccceeeecchhhhhhhhcccc
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN-LSVVT------SDSSLEYLLLHVP--NRSILVVEDIDCSIKLQNRES 290 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~~~~l~-~~~~~------~~~~l~~~~~~~~--~~sIL~iDeiD~l~~~~~r~~ 290 (600)
.++||+||||+|||+||.-+|...++|++.+- ..++. ....+.+.|..+. .-+||++|||+.+++...-
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpI-- 616 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPI-- 616 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccccc--
Confidence 47999999999999999999999999999763 33332 2255778888874 4589999999999863221
Q ss_pred CCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCC-HHHHhcCCcceEEEeCCCCH-HHHHHHHHH
Q 041382 291 QKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRID-PALLRAGRMDRHINLSYCTF-STFKQLAAN 367 (600)
Q Consensus 291 ~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld-~aLlrpgRfd~~I~~~~p~~-e~r~~il~~ 367 (600)
+...+..++..|+-.+.... ..|...+|++||...+-|. -.++. .|+..|++|..+. ++-.+++..
T Consensus 617 --------GPRfSN~vlQaL~VllK~~p-pkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 617 --------GPRFSNLVLQALLVLLKKQP-PKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred --------CchhhHHHHHHHHHHhccCC-CCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHHH
Confidence 12345566666776666543 3344566777777665552 34556 8999999998876 566666653
No 199
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.71 E-value=6.8e-09 Score=99.87 Aligned_cols=63 Identities=37% Similarity=0.616 Sum_probs=45.7
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccC-------ChhHHHHHHhhCCCcceeeecchhh
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVT-------SDSSLEYLLLHVPNRSILVVEDIDC 281 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~-------~~~~l~~~~~~~~~~sIL~iDeiD~ 281 (600)
+.|++|+||||||||.||.|+|+++ |..++.++..++. ........+....+..+|+|||+..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~ 119 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGY 119 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccccccEecccccce
Confidence 4699999999999999999999876 7888888876653 2223334455555778999999953
No 200
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=5.2e-07 Score=94.44 Aligned_cols=123 Identities=13% Similarity=0.185 Sum_probs=89.0
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHcCC---------------------cEEEEe--cCc-------cCChhHHHHHHhh
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYMNY---------------------DIYNLN--LSV-------VTSDSSLEYLLLH 267 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l~~---------------------~~~~l~--~~~-------~~~~~~l~~~~~~ 267 (600)
.+.++||+||+|+||+++|.++|+.+-. +++.+. ... -..-..++.+...
T Consensus 25 l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~ 104 (319)
T PRK08769 25 LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQK 104 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHH
Confidence 4568999999999999999999986621 244442 111 0123455555443
Q ss_pred CC------CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHH
Q 041382 268 VP------NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPAL 341 (600)
Q Consensus 268 ~~------~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aL 341 (600)
.. ..-|++||++|.+-. ..-+.||..|+.. +.+.++|.+|++++.|.|.+
T Consensus 105 ~~~~p~~g~~kV~iI~~ae~m~~--------------------~AaNaLLKtLEEP----p~~~~fiL~~~~~~~lLpTI 160 (319)
T PRK08769 105 LALTPQYGIAQVVIVDPADAINR--------------------AACNALLKTLEEP----SPGRYLWLISAQPARLPATI 160 (319)
T ss_pred HhhCcccCCcEEEEeccHhhhCH--------------------HHHHHHHHHhhCC----CCCCeEEEEECChhhCchHH
Confidence 32 235999999998832 3567889888864 34578999999999999999
Q ss_pred HhcCCcceEEEeCCCCHHHHHHHHHH
Q 041382 342 LRAGRMDRHINLSYCTFSTFKQLAAN 367 (600)
Q Consensus 342 lrpgRfd~~I~~~~p~~e~r~~il~~ 367 (600)
++ |+ ..|.|+.|+.++-.+.+..
T Consensus 161 rS--RC-q~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 161 RS--RC-QRLEFKLPPAHEALAWLLA 183 (319)
T ss_pred Hh--hh-eEeeCCCcCHHHHHHHHHH
Confidence 99 98 6899999999887766654
No 201
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=1.2e-07 Score=99.85 Aligned_cols=124 Identities=13% Similarity=0.188 Sum_probs=89.8
Q ss_pred CCCcceeeeCCCCCCHHHHHHHHHHHcC-------------------------CcEEEEecCc----------cCChhHH
Q 041382 217 VWKRGYLLYGPPGTGKSSLIAAMANYMN-------------------------YDIYNLNLSV----------VTSDSSL 261 (600)
Q Consensus 217 ~~~rgiLL~GppGtGKTsla~alA~~l~-------------------------~~~~~l~~~~----------~~~~~~l 261 (600)
..+.++||+||+|+|||++|+++|+.+. -+++.++... ..+-..+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 3456899999999999999999999762 2455565421 1234556
Q ss_pred HHHHhhCC------CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcC
Q 041382 262 EYLLLHVP------NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKD 335 (600)
Q Consensus 262 ~~~~~~~~------~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~ 335 (600)
|.+..... ..-|++||++|.+-. ...+.|+..++... .+..+|++|++++
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~--------------------~a~naLLk~LEep~----~~~~~Ilvth~~~ 154 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNL--------------------QAANSLLKVLEEPP----PQVVFLLVSHAAD 154 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCH--------------------HHHHHHHHHHHhCc----CCCEEEEEeCChH
Confidence 66554442 345888999998732 34466777777652 2366788999999
Q ss_pred cCCHHHHhcCCcceEEEeCCCCHHHHHHHHHH
Q 041382 336 RIDPALLRAGRMDRHINLSYCTFSTFKQLAAN 367 (600)
Q Consensus 336 ~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~ 367 (600)
.+.|.+.+ |+ ..+.|++|+.++..+.+..
T Consensus 155 ~ll~ti~S--Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 155 KVLPTIKS--RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred hChHHHHH--Hh-hhhcCCCCCHHHHHHHHHh
Confidence 99999999 88 6899999999887766653
No 202
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1e-07 Score=96.73 Aligned_cols=123 Identities=22% Similarity=0.353 Sum_probs=79.1
Q ss_pred ccc-cccChhHHHHHHHHHHHHHhCHHHHHHhCC--------CCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCc
Q 041382 184 FGT-LVMDGDLKETVLNDLDCFRRGKEYYRKIGK--------VWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSV 254 (600)
Q Consensus 184 f~~-l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~--------~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~ 254 (600)
+|+ ++|++..|+-+-=.+-++ |+++.. -.+.++||.||.|||||.||+.+|+.++.||-.-|++.
T Consensus 59 Ld~YVIGQe~AKKvLsVAVYNH------YKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATt 132 (408)
T COG1219 59 LDEYVIGQEQAKKVLSVAVYNH------YKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATT 132 (408)
T ss_pred hhhheecchhhhceeeeeehhH------HHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccc
Confidence 443 677777776554333222 223211 12358999999999999999999999999999999888
Q ss_pred cCC--------hhHHHHHHhhCC------CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCcc
Q 041382 255 VTS--------DSSLEYLLLHVP------NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLL 318 (600)
Q Consensus 255 ~~~--------~~~l~~~~~~~~------~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~ 318 (600)
+.. +.-+.+++..+. .+.|++|||||.+.. .+...+-..+- ...-.-..||..|+|..
T Consensus 133 LTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIar----kSeN~SITRDV--SGEGVQQALLKiiEGTv 204 (408)
T COG1219 133 LTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIAR----KSENPSITRDV--SGEGVQQALLKIIEGTV 204 (408)
T ss_pred hhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhc----cCCCCCccccc--CchHHHHHHHHHHcCce
Confidence 751 233556666552 689999999999953 22111111111 11223345788888764
No 203
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.68 E-value=9.5e-08 Score=98.09 Aligned_cols=134 Identities=25% Similarity=0.425 Sum_probs=79.9
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcCCc---EEEEecCccCChhHHHHHHhhC-------------CCcceeeecchhhh
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMNYD---IYNLNLSVVTSDSSLEYLLLHV-------------PNRSILVVEDIDCS 282 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~~~---~~~l~~~~~~~~~~l~~~~~~~-------------~~~sIL~iDeiD~l 282 (600)
++.+||.||+|||||++++..-..+.-. ...++++...+...+...+... .+++|+||||+..-
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMP 112 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCC
Confidence 4589999999999999998877666433 3346666554445555444332 14579999999854
Q ss_pred hhhhccccCCCCCCCCCCCChHHHHHHHHHhh-c--CccccCC------CeeEEEEecCCcC---cCCHHHHhcCCcceE
Q 041382 283 IKLQNRESQKGDEPADSYRGPQVTLAGLLNAI-D--GLLCCCG------DEKITVFTTNYKD---RIDPALLRAGRMDRH 350 (600)
Q Consensus 283 ~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~l-d--g~~~~~~------~~~iiI~TTN~~~---~Ld~aLlrpgRfd~~ 350 (600)
.. + ..+ .+.. .+||..+ | |.+.... .++.+|+++|... .+++.|+| .| ..
T Consensus 113 ~~--d-----------~yg-tq~~-iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i 174 (272)
T PF12775_consen 113 QP--D-----------KYG-TQPP-IELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NI 174 (272)
T ss_dssp ----------------TTS---HH-HHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EE
T ss_pred CC--C-----------CCC-CcCH-HHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EE
Confidence 22 1 111 1122 2444433 2 3332211 2477888887432 47899998 88 68
Q ss_pred EEeCCCCHHHHHHHHHHhcC
Q 041382 351 INLSYCTFSTFKQLAANYLD 370 (600)
Q Consensus 351 I~~~~p~~e~r~~il~~~l~ 370 (600)
+.+++|+.+....|+..++.
T Consensus 175 ~~~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 175 LNIPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp EE----TCCHHHHHHHHHHH
T ss_pred EEecCCChHHHHHHHHHHHh
Confidence 99999999998888777664
No 204
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=5.3e-08 Score=112.17 Aligned_cols=153 Identities=17% Similarity=0.239 Sum_probs=101.3
Q ss_pred ccccccC-hhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc----------CCcEEEEec
Q 041382 184 FGTLVMD-GDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM----------NYDIYNLNL 252 (600)
Q Consensus 184 f~~l~g~-~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l----------~~~~~~l~~ 252 (600)
++.++|. ++..+++++.+.+ .-+++.+|.|.||+|||.++.-+|+.. +..++.+++
T Consensus 185 ldPvigr~deeirRvi~iL~R-------------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSR-------------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCccCCchHHHHHHHHHHhc-------------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 6788887 7777777776642 223689999999999999999999965 456778887
Q ss_pred CccCCh--------hHHHHHHhh---CCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccC
Q 041382 253 SVVTSD--------SSLEYLLLH---VPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCC 321 (600)
Q Consensus 253 ~~~~~~--------~~l~~~~~~---~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~ 321 (600)
..+... ..+..+... .....||||||++.+.+... .........+|..+-+ .
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~-------------~~~~~d~~nlLkp~L~---r- 314 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGS-------------NYGAIDAANLLKPLLA---R- 314 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCC-------------cchHHHHHHhhHHHHh---c-
Confidence 765532 345555554 34678999999999975111 0012223334433322 2
Q ss_pred CCeeEEEEecCCcC-----cCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcC
Q 041382 322 GDEKITVFTTNYKD-----RIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLD 370 (600)
Q Consensus 322 ~~~~iiI~TTN~~~-----~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~ 370 (600)
+++-+|+||..-+ .-||+|-| ||+ .+.++.|+.+.-..|+.....
T Consensus 315 -g~l~~IGatT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~~ 364 (898)
T KOG1051|consen 315 -GGLWCIGATTLETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLSE 364 (898)
T ss_pred -CCeEEEecccHHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhhh
Confidence 2377888664221 22999999 996 678899998775556654443
No 205
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.66 E-value=1.2e-07 Score=105.04 Aligned_cols=142 Identities=14% Similarity=0.159 Sum_probs=87.6
Q ss_pred CCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC---------------
Q 041382 181 PMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY--------------- 245 (600)
Q Consensus 181 p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~--------------- 245 (600)
+..|+++.|....++.+.-.+ .....++|+||||||||+++++++..+.-
T Consensus 188 ~~d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~ 252 (499)
T TIGR00368 188 DLDLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSL 252 (499)
T ss_pred CCCHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccc
Confidence 347999999888866554322 22347999999999999999999975421
Q ss_pred -------------cEEEEecCcc-----CChhHHHHHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHH
Q 041382 246 -------------DIYNLNLSVV-----TSDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTL 307 (600)
Q Consensus 246 -------------~~~~l~~~~~-----~~~~~l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~l 307 (600)
||....++.. .+....+.-........+|||||++.+-. ..+
T Consensus 253 ~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~--------------------~~~ 312 (499)
T TIGR00368 253 VGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKR--------------------SVL 312 (499)
T ss_pred hhhhccccccccCCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCCH--------------------HHH
Confidence 1111111100 00000111111223468999999997632 344
Q ss_pred HHHHHhhcCcc---------ccCCCeeEEEEecCCc-----C------------------cCCHHHHhcCCcceEEEeCC
Q 041382 308 AGLLNAIDGLL---------CCCGDEKITVFTTNYK-----D------------------RIDPALLRAGRMDRHINLSY 355 (600)
Q Consensus 308 s~lL~~ldg~~---------~~~~~~~iiI~TTN~~-----~------------------~Ld~aLlrpgRfd~~I~~~~ 355 (600)
..|+..|+.-. .....++.+|+|||.- . .+.+.|++ |||.++.++.
T Consensus 313 ~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~ 390 (499)
T TIGR00368 313 DALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPL 390 (499)
T ss_pred HHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcC
Confidence 55666664211 0112357888888842 1 58899999 9999999999
Q ss_pred CCHH
Q 041382 356 CTFS 359 (600)
Q Consensus 356 p~~e 359 (600)
++.+
T Consensus 391 ~~~~ 394 (499)
T TIGR00368 391 LPPE 394 (499)
T ss_pred CCHH
Confidence 8865
No 206
>PRK06526 transposase; Provisional
Probab=98.65 E-value=2.5e-08 Score=101.27 Aligned_cols=64 Identities=20% Similarity=0.363 Sum_probs=46.5
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCC-------hhHHHHHHhhCCCcceeeecchhhh
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTS-------DSSLEYLLLHVPNRSILVVEDIDCS 282 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~-------~~~l~~~~~~~~~~sIL~iDeiD~l 282 (600)
+.+++|+||||||||+|+.+++.++ |..++...+..+.. ...+...+.....+.+|+|||++.+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~ 171 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYI 171 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccC
Confidence 3589999999999999999999875 66666655544321 1123344555567889999999865
No 207
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.64 E-value=3.2e-07 Score=102.30 Aligned_cols=158 Identities=21% Similarity=0.225 Sum_probs=101.1
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccC
Q 041382 180 HPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVT 256 (600)
Q Consensus 180 ~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~ 256 (600)
...+|++++|.....+.+.+.+..+... ...+||+|++||||+++|++|-+.. +.|++.+||..+.
T Consensus 207 ~~~~f~~iiG~S~~m~~~~~~i~~~A~~-----------~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~ 275 (526)
T TIGR02329 207 TRYRLDDLLGASAPMEQVRALVRLYARS-----------DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIA 275 (526)
T ss_pred cccchhheeeCCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCC
Confidence 3467999999999888888888665543 2479999999999999999998764 6799999999885
Q ss_pred ChhHHH-HHHh------------------hCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCc
Q 041382 257 SDSSLE-YLLL------------------HVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGL 317 (600)
Q Consensus 257 ~~~~l~-~~~~------------------~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~ 317 (600)
. ..+. .+|. +......|||||||.+-. .....|+..++.-
T Consensus 276 e-~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~--------------------~~Q~~Ll~~L~~~ 334 (526)
T TIGR02329 276 E-SLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPL--------------------PLQTRLLRVLEER 334 (526)
T ss_pred h-hHHHHHhcCCcccccccccccccccchhhcCCceEEecChHhCCH--------------------HHHHHHHHHHhcC
Confidence 4 2233 2332 112457899999998832 2334566666421
Q ss_pred c-cc------CCCeeEEEEecCCc-C------cCCHHHHhcCCcc-eEEEeCCCCH--HHHHHHHHHhcCc
Q 041382 318 L-CC------CGDEKITVFTTNYK-D------RIDPALLRAGRMD-RHINLSYCTF--STFKQLAANYLDI 371 (600)
Q Consensus 318 ~-~~------~~~~~iiI~TTN~~-~------~Ld~aLlrpgRfd-~~I~~~~p~~--e~r~~il~~~l~~ 371 (600)
. .. ..-++-+|+|||.. . .+.+.|.. |+. ..|++|+... ++...|+..|+..
T Consensus 335 ~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~~~~I~lPPLReR~eDI~~L~~~fl~~ 403 (526)
T TIGR02329 335 EVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLSILRIALPPLRERPGDILPLAAEYLVQ 403 (526)
T ss_pred cEEecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHH--hcCCcEEeCCCchhchhHHHHHHHHHHHH
Confidence 1 01 01123577777642 1 23334443 552 4666666644 3455566766653
No 208
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.61 E-value=1.7e-07 Score=95.25 Aligned_cols=94 Identities=22% Similarity=0.417 Sum_probs=61.4
Q ss_pred CCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCC
Q 041382 181 PMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTS 257 (600)
Q Consensus 181 p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~ 257 (600)
...+.++-+.+...+.....+..+.. +|. -+.+++||||||||||.|+.|||+++ |.+++.+...++..
T Consensus 75 ~~~~~d~~~~~~~~~~~l~~~~~~~~---~~~-----~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~ 146 (254)
T COG1484 75 TFEEFDFEFQPGIDKKALEDLASLVE---FFE-----RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLS 146 (254)
T ss_pred CcccccccCCcchhHHHHHHHHHHHH---Hhc-----cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 34444555555555544444443332 222 34699999999999999999999987 67888888777652
Q ss_pred h-------hHHH-HHHhhCCCcceeeecchhhh
Q 041382 258 D-------SSLE-YLLLHVPNRSILVVEDIDCS 282 (600)
Q Consensus 258 ~-------~~l~-~~~~~~~~~sIL~iDeiD~l 282 (600)
+ .... .+.....+.-+|+|||+-..
T Consensus 147 ~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~ 179 (254)
T COG1484 147 KLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYE 179 (254)
T ss_pred HHHHHHhcCchHHHHHHHhhcCCEEEEecccCc
Confidence 1 1122 22333567789999999654
No 209
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.60 E-value=8e-07 Score=99.57 Aligned_cols=158 Identities=18% Similarity=0.168 Sum_probs=97.6
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccC
Q 041382 180 HPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVT 256 (600)
Q Consensus 180 ~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~ 256 (600)
...+|++++|.....+++++.+...... ...+||+|++||||+++|+++-... +.+++.++|..+.
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~~-----------~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAML-----------DAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 3458999999988878887777554332 2369999999999999999986654 4689999999876
Q ss_pred ChhHHHHHHhh-----------------CCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcC-cc
Q 041382 257 SDSSLEYLLLH-----------------VPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDG-LL 318 (600)
Q Consensus 257 ~~~~l~~~~~~-----------------~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg-~~ 318 (600)
...--..+|.. ......|||||||.+-. ..-..|++.+.. ..
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~--------------------~~Q~~Ll~~l~~~~~ 327 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSP--------------------RMQAKLLRFLNDGTF 327 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCH--------------------HHHHHHHHHHhcCCc
Confidence 42222233321 12357899999998843 122445555532 11
Q ss_pred ccCC------CeeEEEEecCCc-------CcCCHHHHhcCCcc-eEEEeCCCCH--HHHHHHHHHhcC
Q 041382 319 CCCG------DEKITVFTTNYK-------DRIDPALLRAGRMD-RHINLSYCTF--STFKQLAANYLD 370 (600)
Q Consensus 319 ~~~~------~~~iiI~TTN~~-------~~Ld~aLlrpgRfd-~~I~~~~p~~--e~r~~il~~~l~ 370 (600)
...| .++-||+||+.. ..+.+.|.. |+. ..|++|+... +....++..|+.
T Consensus 328 ~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~~~i~lPpLreR~~Di~~L~~~fl~ 393 (520)
T PRK10820 328 RRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLNVLTLNLPPLRDRPQDIMPLTELFVA 393 (520)
T ss_pred ccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCeeEEeCCCcccChhHHHHHHHHHHH
Confidence 1111 135577777642 234556666 653 4556655543 234445555554
No 210
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.58 E-value=2.6e-07 Score=97.23 Aligned_cols=105 Identities=21% Similarity=0.305 Sum_probs=68.2
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCCh---------hHHHHHHhhCCCcceeeecchhhhhhhhc
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTSD---------SSLEYLLLHVPNRSILVVEDIDCSIKLQN 287 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~~---------~~l~~~~~~~~~~sIL~iDeiD~l~~~~~ 287 (600)
.+++||||||||||+|+.|||+++ |..++.++...+... ......+......-+|+|||+.....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e~~--- 260 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTEKI--- 260 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCCCC---
Confidence 689999999999999999999987 777888877665321 11122244445678999999965421
Q ss_pred cccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCC-cCc----CCHHHHhcCCc
Q 041382 288 RESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNY-KDR----IDPALLRAGRM 347 (600)
Q Consensus 288 r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~-~~~----Ld~aLlrpgRf 347 (600)
.....+.|++.++..... +.-+|+|||. ++. +++.+.+ |+
T Consensus 261 ---------------t~~~~~~Lf~iin~R~~~---~k~tIiTSNl~~~el~~~~~eri~S--RL 305 (329)
T PRK06835 261 ---------------TEFSKSELFNLINKRLLR---QKKMIISTNLSLEELLKTYSERISS--RL 305 (329)
T ss_pred ---------------CHHHHHHHHHHHHHHHHC---CCCEEEECCCCHHHHHHHHhHHHHH--HH
Confidence 123345566666544322 2347788884 333 3566666 65
No 211
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.56 E-value=1.6e-07 Score=86.38 Aligned_cols=126 Identities=19% Similarity=0.256 Sum_probs=75.2
Q ss_pred cChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC---cEEEEecCccCChhHHHHHH
Q 041382 189 MDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY---DIYNLNLSVVTSDSSLEYLL 265 (600)
Q Consensus 189 g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~---~~~~l~~~~~~~~~~l~~~~ 265 (600)
|.....+++.+.+...... ...+||+|+|||||+++|+++....+. +++.++|.... .+++
T Consensus 2 G~S~~~~~l~~~l~~~a~~-----------~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----~~~l 65 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKS-----------SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----AELL 65 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCS-----------SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----HHHH
T ss_pred CCCHHHHHHHHHHHHHhCC-----------CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----HHHH
Confidence 4445566677766655442 347999999999999999999997753 55666666543 3344
Q ss_pred hhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCc------CCH
Q 041382 266 LHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDR------IDP 339 (600)
Q Consensus 266 ~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~------Ld~ 339 (600)
..+ .+..|+|+|||.+-. .....|++.+.... ....++|..++..++. +++
T Consensus 66 ~~a-~~gtL~l~~i~~L~~--------------------~~Q~~L~~~l~~~~--~~~~RlI~ss~~~l~~l~~~~~~~~ 122 (138)
T PF14532_consen 66 EQA-KGGTLYLKNIDRLSP--------------------EAQRRLLDLLKRQE--RSNVRLIASSSQDLEELVEEGRFSP 122 (138)
T ss_dssp HHC-TTSEEEEECGCCS-H--------------------HHHHHHHHHHHHCT--TTTSEEEEEECC-CCCHHHHSTHHH
T ss_pred HHc-CCCEEEECChHHCCH--------------------HHHHHHHHHHHhcC--CCCeEEEEEeCCCHHHHhhccchhH
Confidence 444 788999999999843 23344555554321 1122444444434433 567
Q ss_pred HHHhcCCcc-eEEEeCC
Q 041382 340 ALLRAGRMD-RHINLSY 355 (600)
Q Consensus 340 aLlrpgRfd-~~I~~~~ 355 (600)
.|.. |+. ..|.+|+
T Consensus 123 ~L~~--~l~~~~i~lPp 137 (138)
T PF14532_consen 123 DLYY--RLSQLEIHLPP 137 (138)
T ss_dssp HHHH--HCSTCEEEE--
T ss_pred HHHH--HhCCCEEeCCC
Confidence 7776 654 5666664
No 212
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.54 E-value=7.3e-07 Score=99.47 Aligned_cols=90 Identities=21% Similarity=0.264 Sum_probs=68.8
Q ss_pred CCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHH-----------cCCcEEEE
Q 041382 182 MTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANY-----------MNYDIYNL 250 (600)
Q Consensus 182 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~-----------l~~~~~~l 250 (600)
.+|++++|.....+.+.+.+..+... ...+||+|++||||+++|++|-+. .+.||+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s-----------~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARS-----------SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 46999999999888888887665543 247999999999999999999887 46799999
Q ss_pred ecCccCChhHHH-HHHh------------------hCCCcceeeecchhhhh
Q 041382 251 NLSVVTSDSSLE-YLLL------------------HVPNRSILVVEDIDCSI 283 (600)
Q Consensus 251 ~~~~~~~~~~l~-~~~~------------------~~~~~sIL~iDeiD~l~ 283 (600)
||..+.. ..+. .+|. +......||||||+.+-
T Consensus 285 nCaal~e-~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp 335 (538)
T PRK15424 285 NCGAIAE-SLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMP 335 (538)
T ss_pred ecccCCh-hhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCC
Confidence 9998864 2232 2222 11245689999999883
No 213
>PF13173 AAA_14: AAA domain
Probab=98.54 E-value=2.6e-07 Score=83.90 Aligned_cols=115 Identities=22% Similarity=0.323 Sum_probs=71.5
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcC--CcEEEEecCccCChh----HHHHHHhhC--CCcceeeecchhhhhhhhccccC
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMN--YDIYNLNLSVVTSDS----SLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQ 291 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~--~~~~~l~~~~~~~~~----~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~ 291 (600)
+.++|+||+|||||++++.++..+. .+++.+++.+..... .+...+... ..+.+||||||+.+-.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~~~------- 75 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYLPD------- 75 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhhcc-------
Confidence 4689999999999999999999886 888888887654321 123333333 3679999999987621
Q ss_pred CCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHH--HhcCCcceEEEeCCCCHHHH
Q 041382 292 KGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPAL--LRAGRMDRHINLSYCTFSTF 361 (600)
Q Consensus 292 ~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aL--lrpgRfd~~I~~~~p~~e~r 361 (600)
-...+..+. |. . .+.-+|+|+.....+.... .=+||.. .+++.+.+..++
T Consensus 76 -----------~~~~lk~l~---d~----~-~~~~ii~tgS~~~~l~~~~~~~l~gr~~-~~~l~Plsf~E~ 127 (128)
T PF13173_consen 76 -----------WEDALKFLV---DN----G-PNIKIILTGSSSSLLSKDIAESLAGRVI-EIELYPLSFREF 127 (128)
T ss_pred -----------HHHHHHHHH---Hh----c-cCceEEEEccchHHHhhcccccCCCeEE-EEEECCCCHHHh
Confidence 112222222 21 1 1244555554333332211 1246884 899999888764
No 214
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=1.1e-06 Score=90.10 Aligned_cols=70 Identities=17% Similarity=0.275 Sum_probs=52.4
Q ss_pred ccccChhHHHHHHHHHHHHHhCHHHHHHh-CCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCcc
Q 041382 186 TLVMDGDLKETVLNDLDCFRRGKEYYRKI-GKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVV 255 (600)
Q Consensus 186 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~-g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~ 255 (600)
.++|+.+.|+.+-=.+.+...+...-..+ .--.|+++|..||.|+|||-+|+-+|+..+.||+.+..+.+
T Consensus 16 yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKf 86 (444)
T COG1220 16 YIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKF 86 (444)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeee
Confidence 37899999998876665444332222221 12246799999999999999999999999999999877655
No 215
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.52 E-value=3e-07 Score=101.56 Aligned_cols=140 Identities=19% Similarity=0.256 Sum_probs=87.2
Q ss_pred CccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCc--EEEEecCccCC---
Q 041382 183 TFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYD--IYNLNLSVVTS--- 257 (600)
Q Consensus 183 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~--~~~l~~~~~~~--- 257 (600)
.|..+.|....++.+.-. ......++|+||||||||++++.+++.+.-. -..++.+.+.+
T Consensus 189 d~~~v~Gq~~~~~al~la---------------a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEIT---------------AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred CeEEEECcHHHHhhhhee---------------ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 577777766655443211 1234579999999999999999999866311 01122111110
Q ss_pred ------------------hhHHHHHH----------hhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHH
Q 041382 258 ------------------DSSLEYLL----------LHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAG 309 (600)
Q Consensus 258 ------------------~~~l~~~~----------~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~ 309 (600)
......++ .......+|||||++.+- ..++..
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~--------------------~~~~~~ 313 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFE--------------------RRTLDA 313 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCCEEecCCchhCC--------------------HHHHHH
Confidence 00011122 122345799999998762 245667
Q ss_pred HHHhhc-Ccc--cc------CCCeeEEEEecCCcC---------------------cCCHHHHhcCCcceEEEeCCCCHH
Q 041382 310 LLNAID-GLL--CC------CGDEKITVFTTNYKD---------------------RIDPALLRAGRMDRHINLSYCTFS 359 (600)
Q Consensus 310 lL~~ld-g~~--~~------~~~~~iiI~TTN~~~---------------------~Ld~aLlrpgRfd~~I~~~~p~~e 359 (600)
|++.|+ +.. +. ...++.+|+|+|... .|++++++ |||.++.+++|+.+
T Consensus 314 L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 314 LREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred HHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 777773 221 11 123578999999642 58889999 99999999999987
No 216
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.50 E-value=1.2e-06 Score=101.64 Aligned_cols=91 Identities=19% Similarity=0.308 Sum_probs=68.4
Q ss_pred CCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCCh
Q 041382 182 MTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTSD 258 (600)
Q Consensus 182 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~~ 258 (600)
.+|++++|.....+.+.+.+...... ...+||+|++|||||++|++|.... +.+++.++|..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~-----------~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQS-----------DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 57899999999999998888765442 2479999999999999999998865 579999999887532
Q ss_pred hHHHHHHh-----------------hCCCcceeeecchhhhh
Q 041382 259 SSLEYLLL-----------------HVPNRSILVVEDIDCSI 283 (600)
Q Consensus 259 ~~l~~~~~-----------------~~~~~sIL~iDeiD~l~ 283 (600)
.--..+|. .......|||||||.+-
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~ 483 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMP 483 (686)
T ss_pred HhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhCC
Confidence 11111111 12346799999999873
No 217
>PRK06921 hypothetical protein; Provisional
Probab=98.49 E-value=4.1e-07 Score=93.15 Aligned_cols=63 Identities=27% Similarity=0.378 Sum_probs=45.3
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHc----CCcEEEEecCccCCh-----hHHHHHHhhCCCcceeeecchhh
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYM----NYDIYNLNLSVVTSD-----SSLEYLLLHVPNRSILVVEDIDC 281 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l----~~~~~~l~~~~~~~~-----~~l~~~~~~~~~~sIL~iDeiD~ 281 (600)
..+++|+||||||||+|+.|||+++ +..++.++..++... ..+...+.......+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 4589999999999999999999986 566777776543211 11223344445678999999953
No 218
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.48 E-value=2.2e-06 Score=84.79 Aligned_cols=158 Identities=21% Similarity=0.244 Sum_probs=80.8
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcCCcE---EEEecCccCCh-------------------------------------
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMNYDI---YNLNLSVVTSD------------------------------------- 258 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~~~~---~~l~~~~~~~~------------------------------------- 258 (600)
.+.++||||+|+|||+|++.+.+.+...- +.++.......
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 35799999999999999999999884321 11111111100
Q ss_pred ----hHHHHHHhh---CCCcceeeecchhhhh-hhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEe
Q 041382 259 ----SSLEYLLLH---VPNRSILVVEDIDCSI-KLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFT 330 (600)
Q Consensus 259 ----~~l~~~~~~---~~~~sIL~iDeiD~l~-~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~T 330 (600)
..+..++.. ...+.||+|||++.+. . .......+..|.+.++...... ++.+|++
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~---------------~~~~~~~~~~l~~~~~~~~~~~--~~~~v~~ 162 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIA---------------SEEDKDFLKSLRSLLDSLLSQQ--NVSIVIT 162 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBC---------------TTTTHHHHHHHHHHHHH----T--TEEEEEE
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhc---------------ccchHHHHHHHHHHHhhccccC--CceEEEE
Confidence 111111111 1234899999999986 2 0123356667777777643332 2444444
Q ss_pred cCCcCc------CCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCC--CccHHHHHHHhhhcCCCHHHHHH
Q 041382 331 TNYKDR------IDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIND--HDLYCHIEKLMEKVKVSPAEVAG 396 (600)
Q Consensus 331 TN~~~~------Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~--~~~~~~i~~l~~~~~~t~a~i~~ 396 (600)
+..... -.+.+. ||+.. +.+++.+.++..+++...+.... ......+..+..-.+=.|++|..
T Consensus 163 ~S~~~~~~~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 163 GSSDSLMEEFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp ESSHHHHHHTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred CCchHHHHHhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 332111 122233 48876 99999999999999998654331 11344555555555666666653
No 219
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.48 E-value=7.9e-07 Score=94.84 Aligned_cols=159 Identities=14% Similarity=0.107 Sum_probs=104.0
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHH----cCCcEEEEecCcc
Q 041382 180 HPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANY----MNYDIYNLNLSVV 255 (600)
Q Consensus 180 ~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~----l~~~~~~l~~~~~ 255 (600)
....+++++|....-+++++.+..+- +....+|++|++||||+.+|++|... .+.|++.+||..+
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~a-----------p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~ 141 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAYA-----------PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAY 141 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhhC-----------CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHh
Confidence 34568999999988888888876522 22347999999999999999999753 3669999999999
Q ss_pred CChhHHHHHHhhC-----------------CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCc-
Q 041382 256 TSDSSLEYLLLHV-----------------PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGL- 317 (600)
Q Consensus 256 ~~~~~l~~~~~~~-----------------~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~- 317 (600)
..+-....+|... ....+||+|||..+-. .....|+..||.-
T Consensus 142 ~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~--------------------~~Q~kLl~~le~g~ 201 (403)
T COG1221 142 SENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPP--------------------EGQEKLLRVLEEGE 201 (403)
T ss_pred CcCHHHHHHhccccceeecccCCcCchheecCCCEEehhhhhhCCH--------------------hHHHHHHHHHHcCc
Confidence 8766665555422 1357999999998743 1234467777641
Q ss_pred cc------cCCCeeEEEEecCC-c-CcCCH--HHHhcCCcceEEEeCCCCH--HHHHHHHHHhcC
Q 041382 318 LC------CCGDEKITVFTTNY-K-DRIDP--ALLRAGRMDRHINLSYCTF--STFKQLAANYLD 370 (600)
Q Consensus 318 ~~------~~~~~~iiI~TTN~-~-~~Ld~--aLlrpgRfd~~I~~~~p~~--e~r~~il~~~l~ 370 (600)
+. ....++-+|++||- + +.+-. .|.+ -|+...|++|+..+ +++..++..|+.
T Consensus 202 ~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~-rl~~~~I~LPpLrER~~Di~~L~e~Fl~ 265 (403)
T COG1221 202 YRRVGGSQPRPVDVRLICATTEDLEEAVLAGADLTR-RLNILTITLPPLRERKEDILLLAEHFLK 265 (403)
T ss_pred eEecCCCCCcCCCceeeeccccCHHHHHHhhcchhh-hhcCceecCCChhhchhhHHHHHHHHHH
Confidence 11 12235777777762 1 22222 3332 15667777776654 334556666654
No 220
>PRK09183 transposase/IS protein; Provisional
Probab=98.47 E-value=2.5e-07 Score=94.35 Aligned_cols=64 Identities=19% Similarity=0.298 Sum_probs=46.2
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCCh-------hHHHHHHhh-CCCcceeeecchhhh
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTSD-------SSLEYLLLH-VPNRSILVVEDIDCS 282 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~~-------~~l~~~~~~-~~~~sIL~iDeiD~l 282 (600)
+.+++|+||||||||+|+.++|..+ |..+..+++..+... ..+...+.. ...+.+++|||++..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYL 176 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccC
Confidence 3589999999999999999998764 677777776554311 123344443 456789999999764
No 221
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=4.3e-06 Score=96.73 Aligned_cols=122 Identities=22% Similarity=0.297 Sum_probs=81.6
Q ss_pred ccccChhHHHHHHHHHHHHHhCHHHHHHhCCC-CCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccC-----
Q 041382 186 TLVMDGDLKETVLNDLDCFRRGKEYYRKIGKV-WKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVT----- 256 (600)
Q Consensus 186 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~-~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~----- 256 (600)
.|+|+++....|-+.+.....+ ++.+ +.-.+||.||.|+|||-||+|+|.++ .-.++.+|++.+.
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~g------l~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskl 636 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAG------LKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKL 636 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcc------cCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhc
Confidence 4688888888888887655431 2222 44578999999999999999999988 4568899998632
Q ss_pred --------ChhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCcc--ccCC--
Q 041382 257 --------SDSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLL--CCCG-- 322 (600)
Q Consensus 257 --------~~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~--~~~~-- 322 (600)
+....-.+.... ..-+||+|||||..-+ ..++.|+..+|... ...|
T Consensus 637 igsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~--------------------~v~n~llq~lD~GrltDs~Gr~ 696 (898)
T KOG1051|consen 637 IGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHP--------------------DVLNILLQLLDRGRLTDSHGRE 696 (898)
T ss_pred cCCCcccccchhHHHHHHHHhcCCceEEEEechhhcCH--------------------HHHHHHHHHHhcCccccCCCcE
Confidence 112222333333 2458999999997532 35566666666432 1122
Q ss_pred ---CeeEEEEecCC
Q 041382 323 ---DEKITVFTTNY 333 (600)
Q Consensus 323 ---~~~iiI~TTN~ 333 (600)
.+.|||+|+|.
T Consensus 697 Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 697 VDFKNAIFIMTSNV 710 (898)
T ss_pred eeccceEEEEeccc
Confidence 35899999874
No 222
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.45 E-value=2.2e-06 Score=85.69 Aligned_cols=160 Identities=18% Similarity=0.273 Sum_probs=109.9
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc-CCcE--------
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM-NYDI-------- 247 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l-~~~~-------- 247 (600)
....|.+|+.+.+.++....+..... . | .. ..+|+|||+|+||-|.+.++-+++ |..+
T Consensus 5 dkyrpksl~~l~~~~e~~~~Lksl~~-----~------~-d~-PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~ 71 (351)
T KOG2035|consen 5 DKYRPKSLDELIYHEELANLLKSLSS-----T------G-DF-PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETR 71 (351)
T ss_pred hhcCcchhhhcccHHHHHHHHHHhcc-----c------C-CC-CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeE
Confidence 67889999999998888777765432 0 0 11 279999999999999999999876 2111
Q ss_pred --------------------EEEecCccC--ChhHHHHHHhhCC-----------CcceeeecchhhhhhhhccccCCCC
Q 041382 248 --------------------YNLNLSVVT--SDSSLEYLLLHVP-----------NRSILVVEDIDCSIKLQNRESQKGD 294 (600)
Q Consensus 248 --------------------~~l~~~~~~--~~~~l~~~~~~~~-----------~~sIL~iDeiD~l~~~~~r~~~~~~ 294 (600)
+.++.++.+ +.--+..++.... .--+++|-|+|.+- |+
T Consensus 72 t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT----~d----- 142 (351)
T KOG2035|consen 72 TFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELT----RD----- 142 (351)
T ss_pred EEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhh----HH-----
Confidence 112222222 1122344443331 12489999999883 22
Q ss_pred CCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCC
Q 041382 295 EPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDH 374 (600)
Q Consensus 295 ~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~ 374 (600)
.-..|-..|+...+.| -+|..+|....+=+++.+ |+ ..|.+|.|+.++...++...+..++.
T Consensus 143 -----------AQ~aLRRTMEkYs~~~----RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l 204 (351)
T KOG2035|consen 143 -----------AQHALRRTMEKYSSNC----RLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGL 204 (351)
T ss_pred -----------HHHHHHHHHHHHhcCc----eEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcc
Confidence 2345666777765554 377888988899999998 87 68999999999999999988876654
Q ss_pred cc
Q 041382 375 DL 376 (600)
Q Consensus 375 ~~ 376 (600)
.+
T Consensus 205 ~l 206 (351)
T KOG2035|consen 205 QL 206 (351)
T ss_pred cC
Confidence 43
No 223
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=8.2e-07 Score=93.46 Aligned_cols=132 Identities=21% Similarity=0.319 Sum_probs=84.5
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCC--------hhHHHHHHhhCC------Ccceeeecchhhhhh
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTS--------DSSLEYLLLHVP------NRSILVVEDIDCSIK 284 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~--------~~~l~~~~~~~~------~~sIL~iDeiD~l~~ 284 (600)
+.++||.||.|+|||.|++-+|+.++.||...||+.+.- ++-+.+++..+. +..|+||||+|.+..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 348999999999999999999999999999999998851 355677777763 678999999999963
Q ss_pred hhccccCCCCCCCCCCCChHHHHHHHHHhhcCccc---------cCCCeeEEEEecC-------CcCcCCHHHHhcCCc-
Q 041382 285 LQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLC---------CCGDEKITVFTTN-------YKDRIDPALLRAGRM- 347 (600)
Q Consensus 285 ~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~---------~~~~~~iiI~TTN-------~~~~Ld~aLlrpgRf- 347 (600)
... +.....+. .-+-.-..||..++|..- ...++.+.|=||| .--.||.-+-| |+
T Consensus 306 ~~~--~i~~~RDV----sGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~r--R~~ 377 (564)
T KOG0745|consen 306 KAE--SIHTSRDV----SGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISR--RLD 377 (564)
T ss_pred cCc--cccccccc----cchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHH--hhc
Confidence 111 00000000 111233457777776421 1112233333333 34456777776 66
Q ss_pred ceEEEeCCCCH
Q 041382 348 DRHINLSYCTF 358 (600)
Q Consensus 348 d~~I~~~~p~~ 358 (600)
|..+-|+.|+-
T Consensus 378 d~slGFg~~s~ 388 (564)
T KOG0745|consen 378 DKSLGFGAPSS 388 (564)
T ss_pred chhcccCCCCC
Confidence 45567777733
No 224
>PHA02624 large T antigen; Provisional
Probab=98.44 E-value=1.3e-06 Score=96.78 Aligned_cols=124 Identities=20% Similarity=0.248 Sum_probs=83.5
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCChhHHHHHHhhCCCcceeeecchhhhhhhhccccCCCC
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGD 294 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~ 294 (600)
|+|.++.++||||||||||+++.+|++.++..++.++++ .+.+...+.-+...-+.+|||+-.-.- .+..-.
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsP----t~ks~FwL~pl~D~~~~l~dD~t~~~~-~~~~Lp--- 498 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCP----PDKLNFELGCAIDQFMVVFEDVKGQPA-DNKDLP--- 498 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCC----cchhHHHhhhhhhceEEEeeecccccc-ccccCC---
Confidence 678888999999999999999999999997777777643 345556666666778999999853221 000000
Q ss_pred CCCCCCCChHHHHHHHHHhhcCccccC-----CCe-----eEEEEecCCcCcCCHHHHhcCCcceEEEeC
Q 041382 295 EPADSYRGPQVTLAGLLNAIDGLLCCC-----GDE-----KITVFTTNYKDRIDPALLRAGRMDRHINLS 354 (600)
Q Consensus 295 ~~~~~~~~~~~~ls~lL~~ldg~~~~~-----~~~-----~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~ 354 (600)
.+..-..+..|-|.+||-..-+ ... --.|.|||. ..||..+.- ||-..+.|.
T Consensus 499 -----~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~ 560 (647)
T PHA02624 499 -----SGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFK 560 (647)
T ss_pred -----cccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhcccc
Confidence 0111123456788888862110 011 135678886 467999998 998888885
No 225
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.44 E-value=5.8e-07 Score=91.53 Aligned_cols=159 Identities=19% Similarity=0.241 Sum_probs=101.5
Q ss_pred cccccccccCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCc--
Q 041382 169 DRWSSSGVNLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYD-- 246 (600)
Q Consensus 169 ~~w~~~~v~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~-- 246 (600)
..|. +-.+|.+++++++.++....+.+.. ..+.- .+.|+|||||||||+.+.+.|..+-.+
T Consensus 29 ~pwv----ekyrP~~l~dv~~~~ei~st~~~~~-----------~~~~l--Ph~L~YgPPGtGktsti~a~a~~ly~~~~ 91 (360)
T KOG0990|consen 29 QPWV----EKYRPPFLGIVIKQEPIWSTENRYS-----------GMPGL--PHLLFYGPPGTGKTSTILANARDFYSPHP 91 (360)
T ss_pred CCCc----cCCCCchhhhHhcCCchhhHHHHhc-----------cCCCC--CcccccCCCCCCCCCchhhhhhhhcCCCC
Confidence 3566 8889999999999988766665441 11111 289999999999999999999987442
Q ss_pred ----EEEEecCccCCh---hHHHHHHhhCC---------CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHH
Q 041382 247 ----IYNLNLSVVTSD---SSLEYLLLHVP---------NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGL 310 (600)
Q Consensus 247 ----~~~l~~~~~~~~---~~l~~~~~~~~---------~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~l 310 (600)
+..++.++-.+- ..-...|..+. .+-.+++||.|+.-. + .-+.|
T Consensus 92 ~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~----~----------------AQnAL 151 (360)
T KOG0990|consen 92 TTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTR----D----------------AQNAL 151 (360)
T ss_pred chhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhH----H----------------HHHHH
Confidence 222333332211 11122333332 467999999998832 1 22333
Q ss_pred HHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCc
Q 041382 311 LNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDI 371 (600)
Q Consensus 311 L~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~ 371 (600)
-..+.... .+.-|+..+|++..+.|++.. ||- ...+.+.+..+-..........
T Consensus 152 RRviek~t----~n~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~ 205 (360)
T KOG0990|consen 152 RRVIEKYT----ANTRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRES 205 (360)
T ss_pred HHHHHHhc----cceEEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhc
Confidence 34444432 235566788999999999998 884 5566666665555555555443
No 226
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.43 E-value=2.4e-06 Score=85.56 Aligned_cols=132 Identities=18% Similarity=0.175 Sum_probs=81.1
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCChhHHHHHHhhCC-CcceeeecchhhhhhhhccccCCCCCCC
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYLLLHVP-NRSILVVEDIDCSIKLQNRESQKGDEPA 297 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~~~~l~~~~~~~~-~~sIL~iDeiD~l~~~~~r~~~~~~~~~ 297 (600)
..|-.++||+|||||.+++++|..+|.+++.++|+.-.+-..+.+++..+. ..+-+++||++.+-.
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~GaW~cfdefnrl~~------------- 98 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQSGAWLCFDEFNRLSE------------- 98 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHHT-EEEEETCCCSSH-------------
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhcCchhhhhhhhhhhH-------------
Confidence 347789999999999999999999999999999999988888888887764 689999999998732
Q ss_pred CCCCChHHHHHHHHHhh-cCcccc------------CCCeeEEEEecC----CcCcCCHHHHhcCCcceEEEeCCCCHHH
Q 041382 298 DSYRGPQVTLAGLLNAI-DGLLCC------------CGDEKITVFTTN----YKDRIDPALLRAGRMDRHINLSYCTFST 360 (600)
Q Consensus 298 ~~~~~~~~~ls~lL~~l-dg~~~~------------~~~~~iiI~TTN----~~~~Ld~aLlrpgRfd~~I~~~~p~~e~ 360 (600)
..-..+++.+..+ +.+... -..+.-+++|.| ....||+.|.. -| +.|.|..||...
T Consensus 99 ----~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~~~ 171 (231)
T PF12774_consen 99 ----EVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDLSL 171 (231)
T ss_dssp ----HHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--HHH
T ss_pred ----HHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCHHH
Confidence 0111222222222 111000 001233455666 34578988886 66 899999999987
Q ss_pred HHHHHHHhcC
Q 041382 361 FKQLAANYLD 370 (600)
Q Consensus 361 r~~il~~~l~ 370 (600)
..++.-.-.+
T Consensus 172 I~ei~L~s~G 181 (231)
T PF12774_consen 172 IAEILLLSQG 181 (231)
T ss_dssp HHHHHHHCCC
T ss_pred HHHHHHHHcC
Confidence 6666543333
No 227
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.42 E-value=1.2e-05 Score=81.97 Aligned_cols=127 Identities=18% Similarity=0.209 Sum_probs=70.9
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCC-cEEEEec--CccC-----------------C--h----hHHHHHHh---hCCCc
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNY-DIYNLNL--SVVT-----------------S--D----SSLEYLLL---HVPNR 271 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~-~~~~l~~--~~~~-----------------~--~----~~l~~~~~---~~~~~ 271 (600)
-++|+||+|+|||++++.+++.+.. .+..... .... . . ..+...+. ....+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 5789999999999999999998862 3222111 1110 0 0 01111111 12467
Q ss_pred ceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecC--CcCcC----CHHHHhcC
Q 041382 272 SILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTN--YKDRI----DPALLRAG 345 (600)
Q Consensus 272 sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN--~~~~L----d~aLlrpg 345 (600)
.+|+|||+|.+.. .....+..+.+... ..+..+.+|++.. ..+.+ ...+.+
T Consensus 125 ~vliiDe~~~l~~-----------------~~~~~l~~l~~~~~----~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~-- 181 (269)
T TIGR03015 125 ALLVVDEAQNLTP-----------------ELLEELRMLSNFQT----DNAKLLQIFLVGQPEFRETLQSPQLQQLRQ-- 181 (269)
T ss_pred eEEEEECcccCCH-----------------HHHHHHHHHhCccc----CCCCeEEEEEcCCHHHHHHHcCchhHHHHh--
Confidence 8999999997632 01112222222211 1112233333332 22222 124556
Q ss_pred CcceEEEeCCCCHHHHHHHHHHhcC
Q 041382 346 RMDRHINLSYCTFSTFKQLAANYLD 370 (600)
Q Consensus 346 Rfd~~I~~~~p~~e~r~~il~~~l~ 370 (600)
|+...+++++.+.++...++...+.
T Consensus 182 r~~~~~~l~~l~~~e~~~~l~~~l~ 206 (269)
T TIGR03015 182 RIIASCHLGPLDREETREYIEHRLE 206 (269)
T ss_pred heeeeeeCCCCCHHHHHHHHHHHHH
Confidence 8888999999999999888887764
No 228
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.41 E-value=2.5e-06 Score=95.45 Aligned_cols=154 Identities=16% Similarity=0.167 Sum_probs=97.7
Q ss_pred CccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCChh
Q 041382 183 TFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTSDS 259 (600)
Q Consensus 183 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~~~ 259 (600)
.+++++|.....+.+.+.+...... +..+||+|++||||+++|++|.... +.+++.+||..+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~-----------~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~- 252 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAAS-----------DLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPES- 252 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChH-
Confidence 5788999999998998888765432 3489999999999999999998875 579999999988542
Q ss_pred HHH-HHHh-----------------hCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCcc-cc
Q 041382 260 SLE-YLLL-----------------HVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLL-CC 320 (600)
Q Consensus 260 ~l~-~~~~-----------------~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~-~~ 320 (600)
.+. .+|. .......|||||||.+-. .....|+..++.-. ..
T Consensus 253 ~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~--------------------~~Q~~Ll~~l~~~~~~~ 312 (509)
T PRK05022 253 LAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPL--------------------ALQAKLLRVLQYGEIQR 312 (509)
T ss_pred HHHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCCH--------------------HHHHHHHHHHhcCCEee
Confidence 222 2222 112457899999998843 23345666664321 11
Q ss_pred ------CCCeeEEEEecCCc-------CcCCHHHHhcCCcc-eEEEeCCCCH--HHHHHHHHHhcC
Q 041382 321 ------CGDEKITVFTTNYK-------DRIDPALLRAGRMD-RHINLSYCTF--STFKQLAANYLD 370 (600)
Q Consensus 321 ------~~~~~iiI~TTN~~-------~~Ld~aLlrpgRfd-~~I~~~~p~~--e~r~~il~~~l~ 370 (600)
...++-+|+|||.. ..+.+.|.. |+. ..|++|+... ++...|++.|+.
T Consensus 313 ~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~~~~i~lPpLreR~eDI~~L~~~fl~ 376 (509)
T PRK05022 313 VGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYH--RLSVFPLSVPPLRERGDDVLLLAGYFLE 376 (509)
T ss_pred CCCCcceecceEEEEecCCCHHHHHHcCCccHHHHh--cccccEeeCCCchhchhhHHHHHHHHHH
Confidence 11135677777752 234455554 553 3455555533 233345555553
No 229
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.39 E-value=4.2e-07 Score=79.97 Aligned_cols=61 Identities=21% Similarity=0.361 Sum_probs=39.4
Q ss_pred eeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCChhHHHHHHhhCCCcceeeecchhhh
Q 041382 222 YLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYLLLHVPNRSILVVEDIDCS 282 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~sIL~iDeiD~l 282 (600)
+.||||||+|||++++.+|..+...+-.-....+.....-...+.......++++||+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~~q~vvi~DD~~~~ 61 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQGQPVVIIDDFGQD 61 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccCCCcEEEEeecCcc
Confidence 5799999999999999999877533311111111111222334455567789999999755
No 230
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=8.6e-07 Score=95.14 Aligned_cols=48 Identities=25% Similarity=0.368 Sum_probs=39.6
Q ss_pred CCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc
Q 041382 181 PMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 181 p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l 243 (600)
...|.||+|++..|..+.-.. ...+++|++||||||||++|+-+...|
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAA---------------AGgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAA---------------AGGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHH---------------hcCCcEEEecCCCCchHHhhhhhcccC
Confidence 457999999999998886443 234699999999999999999887754
No 231
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.37 E-value=1.4e-05 Score=85.33 Aligned_cols=161 Identities=17% Similarity=0.093 Sum_probs=108.6
Q ss_pred ccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc-----CCcEEEEecCccCCh
Q 041382 184 FGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM-----NYDIYNLNLSVVTSD 258 (600)
Q Consensus 184 f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l-----~~~~~~l~~~~~~~~ 258 (600)
=+++.|.+.....+.+++...+.. .-++++.+.|-||||||.+..-+-..+ ....++++|.++...
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~---------~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~ 219 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLEL---------NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEA 219 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhc---------ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccch
Confidence 357888888888888777666553 335689999999999999988665544 234588898876422
Q ss_pred hH---------------------HHHHHhh----CCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHh
Q 041382 259 SS---------------------LEYLLLH----VPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNA 313 (600)
Q Consensus 259 ~~---------------------l~~~~~~----~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ 313 (600)
.. ....|.. ...+-++++||+|.++. |+. +.|..
T Consensus 220 ~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~t---r~~------------------~vLy~ 278 (529)
T KOG2227|consen 220 SAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLIT---RSQ------------------TVLYT 278 (529)
T ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhh---ccc------------------ceeee
Confidence 11 1112211 12467999999999973 211 12222
Q ss_pred hcCccccCCCeeEEEEecCCcCcCCHHHHh----cCCcceEEEeCCCCHHHHHHHHHHhcCcCCC
Q 041382 314 IDGLLCCCGDEKITVFTTNYKDRIDPALLR----AGRMDRHINLSYCTFSTFKQLAANYLDINDH 374 (600)
Q Consensus 314 ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlr----pgRfd~~I~~~~p~~e~r~~il~~~l~~~~~ 374 (600)
++......+..+++|+.+|..+.=|..|.| .+.-...+.|++++.++..+|++.-+.....
T Consensus 279 lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t 343 (529)
T KOG2227|consen 279 LFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEEST 343 (529)
T ss_pred ehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccc
Confidence 222222344568999999988877766653 3445678999999999999999998876543
No 232
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.35 E-value=2e-06 Score=99.50 Aligned_cols=128 Identities=17% Similarity=0.203 Sum_probs=79.0
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCC-------cEEEEecCccCC-h------hHHHHHHhhCCCcceeeecchhhhhhh
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNY-------DIYNLNLSVVTS-D------SSLEYLLLHVPNRSILVVEDIDCSIKL 285 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~-------~~~~l~~~~~~~-~------~~l~~~~~~~~~~sIL~iDeiD~l~~~ 285 (600)
-.+||.|+||||||.+++++++.... ++..+.+..... . ..++.-........+++|||+|.+-.
T Consensus 493 ihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms~- 571 (915)
T PTZ00111 493 INVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCHN- 571 (915)
T ss_pred ceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhCCH-
Confidence 37999999999999999999986533 333444433211 0 00000001113467999999998732
Q ss_pred hccccCCCCCCCCCCCChHHHHHHHHHhhcCc---------cccCCCeeEEEEecCCcC-------------cCCHHHHh
Q 041382 286 QNRESQKGDEPADSYRGPQVTLAGLLNAIDGL---------LCCCGDEKITVFTTNYKD-------------RIDPALLR 343 (600)
Q Consensus 286 ~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~---------~~~~~~~~iiI~TTN~~~-------------~Ld~aLlr 343 (600)
...+.|+..|+.- ...-+...-||+|+|..+ .|+++|++
T Consensus 572 -------------------~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS 632 (915)
T PTZ00111 572 -------------------ESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT 632 (915)
T ss_pred -------------------HHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh
Confidence 2334566666422 111223467889998642 36899999
Q ss_pred cCCcceEE-EeCCCCHHHHHHHHHHhc
Q 041382 344 AGRMDRHI-NLSYCTFSTFKQLAANYL 369 (600)
Q Consensus 344 pgRfd~~I-~~~~p~~e~r~~il~~~l 369 (600)
|||... -++.|+.+.=+.|....+
T Consensus 633 --RFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 633 --RFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred --hhcEEEEecCCCChHHHHHHHHHHH
Confidence 999764 448888776556655444
No 233
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.32 E-value=1e-05 Score=81.48 Aligned_cols=52 Identities=31% Similarity=0.420 Sum_probs=36.8
Q ss_pred cccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 185 GTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 185 ~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
+-++|+...+++.--.+ ...+.+ .-.+|++||.||||||||.||-+|+.++|
T Consensus 38 ~g~vGQ~~AReAagiiv-dlik~K-------kmaGravLlaGppgtGKTAlAlaisqELG 89 (456)
T KOG1942|consen 38 AGFVGQENAREAAGIIV-DLIKSK-------KMAGRAVLLAGPPGTGKTALALAISQELG 89 (456)
T ss_pred cccccchhhhhhhhHHH-HHHHhh-------hccCcEEEEecCCCCchhHHHHHHHHHhC
Confidence 34688887776543222 222222 12357999999999999999999999985
No 234
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.31 E-value=1.2e-05 Score=82.51 Aligned_cols=184 Identities=18% Similarity=0.215 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHhcCceeEEeecCCcccccccccCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCccee
Q 041382 144 LVHVLEMAKMFKDRNRIVRFHTIRHDRWSSSGVNLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYL 223 (600)
Q Consensus 144 l~~v~~~~~~~~~~~~~~~~~~~~~~~w~~~~v~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiL 223 (600)
++|+...+..+......-+|.....++|- |.+.. +++++.+...+..|. ..-..++|
T Consensus 9 ~~HL~~~~~~~~~l~~~eRI~~i~~~rWI----------------gY~~A-~~~L~~L~~Ll~~P~------~~Rmp~lL 65 (302)
T PF05621_consen 9 YSHLHPDARELLQLSDEERIAYIRADRWI----------------GYPRA-KEALDRLEELLEYPK------RHRMPNLL 65 (302)
T ss_pred hhhcCHHHHHHHhcCHHHHHHHHhcCCee----------------cCHHH-HHHHHHHHHHHhCCc------ccCCCceE
Confidence 35555555554443333333333345776 33333 345555655555442 11124899
Q ss_pred eeCCCCCCHHHHHHHHHHHc---------CCcEEEEecCccCChhHHHHHH------------------------hhCCC
Q 041382 224 LYGPPGTGKSSLIAAMANYM---------NYDIYNLNLSVVTSDSSLEYLL------------------------LHVPN 270 (600)
Q Consensus 224 L~GppGtGKTsla~alA~~l---------~~~~~~l~~~~~~~~~~l~~~~------------------------~~~~~ 270 (600)
|+|++|.|||++++..+... ..|++.+.+..-.+...+-..+ .....
T Consensus 66 ivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~ 145 (302)
T PF05621_consen 66 IVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLG 145 (302)
T ss_pred EecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcC
Confidence 99999999999999998744 2467777765544433332211 11124
Q ss_pred cceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcC--cCCHHHHhcCCcc
Q 041382 271 RSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKD--RIDPALLRAGRMD 348 (600)
Q Consensus 271 ~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~--~Ld~aLlrpgRfd 348 (600)
.-+|+|||++.++..+ .. . -..+||.+-.+.....=.++.|+|-.-.. .-|+.|-+ ||+
T Consensus 146 vrmLIIDE~H~lLaGs-------------~~-~---qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~--RF~ 206 (302)
T PF05621_consen 146 VRMLIIDEFHNLLAGS-------------YR-K---QREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLAS--RFE 206 (302)
T ss_pred CcEEEeechHHHhccc-------------HH-H---HHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHh--ccC
Confidence 5699999999986411 11 1 22344444444333222356666653222 23899999 996
Q ss_pred eEEEeCC-CCHHHHHHHHHHhcC
Q 041382 349 RHINLSY-CTFSTFKQLAANYLD 370 (600)
Q Consensus 349 ~~I~~~~-p~~e~r~~il~~~l~ 370 (600)
.+.+|. ...+++..++..|-.
T Consensus 207 -~~~Lp~W~~d~ef~~LL~s~e~ 228 (302)
T PF05621_consen 207 -PFELPRWELDEEFRRLLASFER 228 (302)
T ss_pred -CccCCCCCCCcHHHHHHHHHHH
Confidence 555543 334556677766543
No 235
>PF05729 NACHT: NACHT domain
Probab=98.31 E-value=4.1e-06 Score=78.34 Aligned_cols=134 Identities=20% Similarity=0.232 Sum_probs=71.7
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCC---------cEEEEecCccCChh---HHHHH------------------HhhCCC
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNY---------DIYNLNLSVVTSDS---SLEYL------------------LLHVPN 270 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~---------~~~~l~~~~~~~~~---~l~~~------------------~~~~~~ 270 (600)
-++++|+||+|||++++.++..+.. -++.+.+....... .+... +.....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 5789999999999999999987621 12234443332211 12211 222345
Q ss_pred cceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceE
Q 041382 271 RSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRH 350 (600)
Q Consensus 271 ~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~ 350 (600)
+.+|+||.+|.+.. ... ..........+.+.+... .. .++-+|.|+.. ...+ .+.+...-...
T Consensus 82 ~~llilDglDE~~~--~~~----------~~~~~~~~~~l~~l~~~~-~~--~~~~liit~r~-~~~~-~~~~~~~~~~~ 144 (166)
T PF05729_consen 82 RVLLILDGLDELEE--QDQ----------SQERQRLLDLLSQLLPQA-LP--PGVKLIITSRP-RAFP-DLRRRLKQAQI 144 (166)
T ss_pred ceEEEEechHhccc--chh----------hhHHHHHHHHHHHHhhhc-cC--CCCeEEEEEcC-ChHH-HHHHhcCCCcE
Confidence 78999999998853 000 000111122222333321 11 12333344332 1211 13331111257
Q ss_pred EEeCCCCHHHHHHHHHHhcCc
Q 041382 351 INLSYCTFSTFKQLAANYLDI 371 (600)
Q Consensus 351 I~~~~p~~e~r~~il~~~l~~ 371 (600)
++++..+.++..+++++|+..
T Consensus 145 ~~l~~~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 145 LELEPFSEEDIKQYLRKYFSN 165 (166)
T ss_pred EEECCCCHHHHHHHHHHHhhc
Confidence 999999999999999998863
No 236
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=2.5e-05 Score=78.93 Aligned_cols=113 Identities=15% Similarity=0.127 Sum_probs=78.6
Q ss_pred CCCcceeeeCCCCCCHHHHHHHHHHHcCC----------------------cEEEEecC-ccCChhHHHHHHhhC---C-
Q 041382 217 VWKRGYLLYGPPGTGKSSLIAAMANYMNY----------------------DIYNLNLS-VVTSDSSLEYLLLHV---P- 269 (600)
Q Consensus 217 ~~~rgiLL~GppGtGKTsla~alA~~l~~----------------------~~~~l~~~-~~~~~~~l~~~~~~~---~- 269 (600)
.++.++||+||+|+||..+|.++|..+-. +++.+... ...+...++.+.... +
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 45679999999999999999999997621 22222111 111234444444332 1
Q ss_pred ---CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCC
Q 041382 270 ---NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGR 346 (600)
Q Consensus 270 ---~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgR 346 (600)
..-|++|+++|.+-. ...+.||..++.- +.+.++|++|+.++.+.|.+++ |
T Consensus 85 e~~~~KV~II~~ae~m~~--------------------~AaNaLLK~LEEP----p~~t~fiLit~~~~~lLpTI~S--R 138 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNK--------------------QSANSLLKLIEEP----PKNTYGIFTTRNENNILNTILS--R 138 (261)
T ss_pred hcCCCEEEEeccHhhhCH--------------------HHHHHHHHhhcCC----CCCeEEEEEECChHhCchHhhh--h
Confidence 235888888887732 4567888888763 4568999999999999999999 8
Q ss_pred cceEEEeCCC
Q 041382 347 MDRHINLSYC 356 (600)
Q Consensus 347 fd~~I~~~~p 356 (600)
+ ..+.++.+
T Consensus 139 C-q~~~~~~~ 147 (261)
T PRK05818 139 C-VQYVVLSK 147 (261)
T ss_pred e-eeeecCCh
Confidence 8 45777766
No 237
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.29 E-value=2.5e-06 Score=77.02 Aligned_cols=37 Identities=32% Similarity=0.589 Sum_probs=29.5
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHc--------CCcEEEEecCccC
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYM--------NYDIYNLNLSVVT 256 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l--------~~~~~~l~~~~~~ 256 (600)
+.++++||||+|||++++.++..+ +.+++.+++....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR 49 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC
Confidence 578999999999999999999987 6778888776554
No 238
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.28 E-value=6.4e-06 Score=84.76 Aligned_cols=112 Identities=13% Similarity=0.163 Sum_probs=81.2
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHcCC----------------cEEEEecCc---cCChhHHHHHHhhCC------Ccc
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYMNY----------------DIYNLNLSV---VTSDSSLEYLLLHVP------NRS 272 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l~~----------------~~~~l~~~~---~~~~~~l~~~~~~~~------~~s 272 (600)
.+.+|||+||+|+||+.+|.++|..+-. +++.+.... ..+-..++.+..... ..-
T Consensus 18 l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~k 97 (290)
T PRK05917 18 VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYK 97 (290)
T ss_pred cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCce
Confidence 4569999999999999999999997621 244442211 123445555554442 235
Q ss_pred eeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEE
Q 041382 273 ILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHIN 352 (600)
Q Consensus 273 IL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~ 352 (600)
|++||++|.+-. ..-+.||..|+.. ++++++|..|+.++.|.|.+++ |+ ..+.
T Consensus 98 v~ii~~ad~mt~--------------------~AaNaLLK~LEEP----p~~~~fiL~~~~~~~ll~TI~S--Rc-q~~~ 150 (290)
T PRK05917 98 IYIIHEADRMTL--------------------DAISAFLKVLEDP----PQHGVIILTSAKPQRLPPTIRS--RS-LSIH 150 (290)
T ss_pred EEEEechhhcCH--------------------HHHHHHHHHhhcC----CCCeEEEEEeCChhhCcHHHHh--cc-eEEE
Confidence 999999998842 3557788888864 3568999999999999999999 88 5788
Q ss_pred eCCC
Q 041382 353 LSYC 356 (600)
Q Consensus 353 ~~~p 356 (600)
|+++
T Consensus 151 ~~~~ 154 (290)
T PRK05917 151 IPME 154 (290)
T ss_pred ccch
Confidence 8765
No 239
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.24 E-value=3e-06 Score=92.21 Aligned_cols=135 Identities=21% Similarity=0.250 Sum_probs=91.0
Q ss_pred CCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCc
Q 041382 178 LDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSV 254 (600)
Q Consensus 178 ~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~ 254 (600)
+..+.+|++++|......++++.+..+.. ..-.+|+.|.+||||..+|++|-+.. +.||+.+||..
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~A~-----------tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaA 306 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRIAK-----------TDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAA 306 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhhcC-----------CCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEeccc
Confidence 45667899999999888888777755443 23489999999999999999998865 67999999998
Q ss_pred cCChhHHH-HH-------HhhC-----------CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhc
Q 041382 255 VTSDSSLE-YL-------LLHV-----------PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAID 315 (600)
Q Consensus 255 ~~~~~~l~-~~-------~~~~-----------~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ld 315 (600)
+.. .-+. .+ |..+ .+..-||+|||..+ +...-+.||..+.
T Consensus 307 iPe-~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgem--------------------pl~LQaKLLRVLQ 365 (560)
T COG3829 307 IPE-TLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEM--------------------PLPLQAKLLRVLQ 365 (560)
T ss_pred CCH-HHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccC--------------------CHHHHHHHHHHHh
Confidence 852 2222 11 2222 23468999999765 2235566777764
Q ss_pred C--cc-----ccCCCeeEEEEecCCcCcCCHHHHhcCCc
Q 041382 316 G--LL-----CCCGDEKITVFTTNYKDRIDPALLRAGRM 347 (600)
Q Consensus 316 g--~~-----~~~~~~~iiI~TTN~~~~Ld~aLlrpgRf 347 (600)
. ++ ..-.-++-||+|||.. | ..++.-|+|
T Consensus 366 Ekei~rvG~t~~~~vDVRIIAATN~n--L-~~~i~~G~F 401 (560)
T COG3829 366 EKEIERVGGTKPIPVDVRIIAATNRN--L-EKMIAEGTF 401 (560)
T ss_pred hceEEecCCCCceeeEEEEEeccCcC--H-HHHHhcCcc
Confidence 2 11 1112357899999962 2 234445666
No 240
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.23 E-value=1.2e-05 Score=88.36 Aligned_cols=89 Identities=18% Similarity=0.221 Sum_probs=61.7
Q ss_pred CccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCChh
Q 041382 183 TFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTSDS 259 (600)
Q Consensus 183 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~~~ 259 (600)
.+..++|.....+.+...+..... ....++++|++||||+++|+++.... +.+++.++|..+.. .
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~-----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~-~ 204 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAP-----------SDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPE-N 204 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCCh-H
Confidence 355677766666666665543221 23479999999999999999998765 46899999998854 3
Q ss_pred HHHH-HHhh-----------------CCCcceeeecchhhhh
Q 041382 260 SLEY-LLLH-----------------VPNRSILVVEDIDCSI 283 (600)
Q Consensus 260 ~l~~-~~~~-----------------~~~~sIL~iDeiD~l~ 283 (600)
.+.. +|.. ......|||||||.+-
T Consensus 205 ~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~ 246 (445)
T TIGR02915 205 LLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLP 246 (445)
T ss_pred HHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCC
Confidence 3333 2221 1245789999999884
No 241
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.23 E-value=1.4e-05 Score=88.66 Aligned_cols=155 Identities=16% Similarity=0.176 Sum_probs=96.2
Q ss_pred CccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCChh
Q 041382 183 TFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTSDS 259 (600)
Q Consensus 183 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~~~ 259 (600)
++.+++|.......+...+..... ....+|+.|++||||+++|+++.... +.+++.++|..+....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~-----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~ 204 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSR-----------SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL 204 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhc-----------cCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH
Confidence 456788877766666665543322 23479999999999999999998876 4699999999884332
Q ss_pred HHHHHHhh-----------------CCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCcc--cc
Q 041382 260 SLEYLLLH-----------------VPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLL--CC 320 (600)
Q Consensus 260 ~l~~~~~~-----------------~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~--~~ 320 (600)
--..+|.. ...+..|||||||.+-. .....|+..++.-. ..
T Consensus 205 ~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~--------------------~~q~~L~~~l~~~~~~~~ 264 (469)
T PRK10923 205 IESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPL--------------------DVQTRLLRVLADGQFYRV 264 (469)
T ss_pred HHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCH--------------------HHHHHHHHHHhcCcEEeC
Confidence 22233321 12356899999998743 23345666654321 00
Q ss_pred C-----CCeeEEEEecCCc-------CcCCHHHHhcCCc-ceEEEeCCCCH--HHHHHHHHHhcC
Q 041382 321 C-----GDEKITVFTTNYK-------DRIDPALLRAGRM-DRHINLSYCTF--STFKQLAANYLD 370 (600)
Q Consensus 321 ~-----~~~~iiI~TTN~~-------~~Ld~aLlrpgRf-d~~I~~~~p~~--e~r~~il~~~l~ 370 (600)
. ..++-+|+||+.. ..+.+.|.. |+ ...|++|+... +....|+..|+.
T Consensus 265 ~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~~PpLreR~~Di~~l~~~~l~ 327 (469)
T PRK10923 265 GGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLNVIRVHLPPLRERREDIPRLARHFLQ 327 (469)
T ss_pred CCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--HhcceeecCCCcccchhhHHHHHHHHHH
Confidence 1 1134677777642 245667776 76 45666666543 334456666664
No 242
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.21 E-value=1.9e-05 Score=82.13 Aligned_cols=123 Identities=16% Similarity=0.205 Sum_probs=89.9
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHc--------C---C--cEEEEec-CccCChhHHHHHHhhCC-------Ccceeee
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYM--------N---Y--DIYNLNL-SVVTSDSSLEYLLLHVP-------NRSILVV 276 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l--------~---~--~~~~l~~-~~~~~~~~l~~~~~~~~-------~~sIL~i 276 (600)
.+..|||||+.|.||+.++.++|+.+ + . +++.++. +...+...++.+....+ ..-|++|
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~~~~~~~~~~KvvII 96 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLYFSSFVQSQKKILII 96 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhccCCcccCCceEEEE
Confidence 34689999999999999999999987 1 1 2344441 12223456666655542 4569999
Q ss_pred cchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCC
Q 041382 277 EDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYC 356 (600)
Q Consensus 277 DeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p 356 (600)
|++|.+-. ...+.||..|+.. +...++|++|+.++.|-|++.+ |+ ..++|+++
T Consensus 97 ~~~e~m~~--------------------~a~NaLLK~LEEP----p~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l 149 (299)
T PRK07132 97 KNIEKTSN--------------------SLLNALLKTIEEP----PKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEP 149 (299)
T ss_pred ecccccCH--------------------HHHHHHHHHhhCC----CCCeEEEEEeCChHhChHHHHh--Ce-EEEECCCC
Confidence 99987632 3556788888864 3457888888888999999999 87 68999999
Q ss_pred CHHHHHHHHHH
Q 041382 357 TFSTFKQLAAN 367 (600)
Q Consensus 357 ~~e~r~~il~~ 367 (600)
+.++..+.+..
T Consensus 150 ~~~~l~~~l~~ 160 (299)
T PRK07132 150 DQQKILAKLLS 160 (299)
T ss_pred CHHHHHHHHHH
Confidence 98887766653
No 243
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.19 E-value=2.3e-05 Score=86.59 Aligned_cols=152 Identities=19% Similarity=0.237 Sum_probs=94.8
Q ss_pred cccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCChhHH
Q 041382 185 GTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTSDSSL 261 (600)
Q Consensus 185 ~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~~~~l 261 (600)
..++|......++...+..... ....+++.|.+||||+++++++.... +.+++.++|..+.. ..+
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~-----------~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~-~~~ 201 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSR-----------SDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPK-DLI 201 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhC-----------cCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCH-HHH
Confidence 4577777766666666544322 23478999999999999999998865 56899999998843 333
Q ss_pred HH-HHhh-----------------CCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCc-ccc--
Q 041382 262 EY-LLLH-----------------VPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGL-LCC-- 320 (600)
Q Consensus 262 ~~-~~~~-----------------~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~-~~~-- 320 (600)
.. +|.. ...++.|||||||.+-. .....|+..++.- ...
T Consensus 202 ~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~--------------------~~q~~ll~~l~~~~~~~~~ 261 (463)
T TIGR01818 202 ESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPL--------------------DAQTRLLRVLADGEFYRVG 261 (463)
T ss_pred HHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCH--------------------HHHHHHHHHHhcCcEEECC
Confidence 32 2221 12467899999998843 1234456555421 111
Q ss_pred ----CCCeeEEEEecCCc-------CcCCHHHHhcCCcc-eEEEeCCCC--HHHHHHHHHHhcC
Q 041382 321 ----CGDEKITVFTTNYK-------DRIDPALLRAGRMD-RHINLSYCT--FSTFKQLAANYLD 370 (600)
Q Consensus 321 ----~~~~~iiI~TTN~~-------~~Ld~aLlrpgRfd-~~I~~~~p~--~e~r~~il~~~l~ 370 (600)
...++-+|+||+.. ..+.+.|.. |+. .+|++|+.. .++...++..|+.
T Consensus 262 ~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLr~R~~Di~~l~~~~l~ 323 (463)
T TIGR01818 262 GRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLNVIRIHLPPLRERREDIPRLARHFLA 323 (463)
T ss_pred CCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCcceecCCCcccchhhHHHHHHHHHH
Confidence 11135577777642 234445555 543 477887776 5566677776664
No 244
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.19 E-value=5.5e-05 Score=84.34 Aligned_cols=166 Identities=19% Similarity=0.238 Sum_probs=101.1
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHc----------CCcEEEEecCccCCh----------------------hHHHHHHh--
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYM----------NYDIYNLNLSVVTSD----------------------SSLEYLLL-- 266 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l----------~~~~~~l~~~~~~~~----------------------~~l~~~~~-- 266 (600)
.+++.|-||||||.++..+-..| .++++.+|.-.+.+. ..|..-|.
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 57788999999999999998866 356777776555432 22333344
Q ss_pred -hCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHh--
Q 041382 267 -HVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLR-- 343 (600)
Q Consensus 267 -~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlr-- 343 (600)
....++|++|||+|.|+. | .+ .-|.|++|-... .+...+||+..|+.+. +..++-
T Consensus 504 k~~~~~~VvLiDElD~Lvt---r--------------~Q---dVlYn~fdWpt~-~~sKLvvi~IaNTmdl-PEr~l~nr 561 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVT---R--------------SQ---DVLYNIFDWPTL-KNSKLVVIAIANTMDL-PERLLMNR 561 (767)
T ss_pred CCCCCCEEEEeccHHHHhc---c--------------cH---HHHHHHhcCCcC-CCCceEEEEecccccC-HHHHhccc
Confidence 113578999999999974 1 11 225566664432 3345777777776543 444441
Q ss_pred -cCCcc-eEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhhhcCCCHHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 041382 344 -AGRMD-RHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLMEKVKVSPAEVAGELMKAKGSKTSLEDFITYLESK 418 (600)
Q Consensus 344 -pgRfd-~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~~~~~t~a~i~~~l~~~~~~~~al~~l~~~l~~~ 418 (600)
.-|++ ..|.|.+.+.++..+|+...|....+-....++-.... |+ .-++|+..|++-...+.+..
T Consensus 562 vsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvark-------VA---avSGDaRraldic~RA~Eia 628 (767)
T KOG1514|consen 562 VSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARK-------VA---AVSGDARRALDICRRAAEIA 628 (767)
T ss_pred hhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHH-------HH---hccccHHHHHHHHHHHHHHh
Confidence 12554 46889999999999999988865422222222211111 11 11356666766666666544
No 245
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.17 E-value=2.4e-05 Score=84.93 Aligned_cols=74 Identities=23% Similarity=0.329 Sum_probs=57.5
Q ss_pred CcccccccccCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcE
Q 041382 168 HDRWSSSGVNLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDI 247 (600)
Q Consensus 168 ~~~w~~~~v~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~ 247 (600)
+.-|. ....|.+.++|+-+.....+|.+++..+... ......+-+||+||+||||||.++.||.++|+.+
T Consensus 69 ~elW~----eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~------~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~ 138 (634)
T KOG1970|consen 69 FELWV----EKYKPRTLEELAVHKKKISEVKQWLKQVAEF------TPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQL 138 (634)
T ss_pred cchhH----HhcCcccHHHHhhhHHhHHHHHHHHHHHHHh------ccCCCceEEEEeCCCCCCchhHHHHHHHhhCcee
Confidence 45677 7889999999999999888888888622211 0112234688999999999999999999999988
Q ss_pred EEEe
Q 041382 248 YNLN 251 (600)
Q Consensus 248 ~~l~ 251 (600)
..-.
T Consensus 139 ~Ew~ 142 (634)
T KOG1970|consen 139 IEWS 142 (634)
T ss_pred eeec
Confidence 8754
No 246
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.17 E-value=7.5e-06 Score=92.34 Aligned_cols=119 Identities=19% Similarity=0.151 Sum_probs=86.3
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCC--cEEEEecCc----cCChhHHHHHHhhC-----------CCcceeeecchhhh
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNY--DIYNLNLSV----VTSDSSLEYLLLHV-----------PNRSILVVEDIDCS 282 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~--~~~~l~~~~----~~~~~~l~~~~~~~-----------~~~sIL~iDeiD~l 282 (600)
+|+||-|++|||||+++++++..+.. +|..+..+. +.+.-++...+... ....||||||+..+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~ 105 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERL 105 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccC
Confidence 59999999999999999999999854 777765543 22344444444332 23579999999766
Q ss_pred hhhhccccCCCCCCCCCCCChHHHHHHHHHhhcC---------ccccCCCeeEEEEecCCc---CcCCHHHHhcCCcceE
Q 041382 283 IKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDG---------LLCCCGDEKITVFTTNYK---DRIDPALLRAGRMDRH 350 (600)
Q Consensus 283 ~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg---------~~~~~~~~~iiI~TTN~~---~~Ld~aLlrpgRfd~~ 350 (600)
- ..+++.|+..|+. ........+++|+|-|.. ..|+++++. ||+.+
T Consensus 106 ~--------------------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~ 163 (584)
T PRK13406 106 E--------------------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFH 163 (584)
T ss_pred C--------------------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEE
Confidence 2 2578889988853 222333457788875432 569999999 99999
Q ss_pred EEeCCCCHHH
Q 041382 351 INLSYCTFST 360 (600)
Q Consensus 351 I~~~~p~~e~ 360 (600)
|.+++|+..+
T Consensus 164 v~v~~~~~~~ 173 (584)
T PRK13406 164 LDLDGLALRD 173 (584)
T ss_pred EEcCCCChHH
Confidence 9999998764
No 247
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.16 E-value=2.4e-05 Score=89.09 Aligned_cols=50 Identities=30% Similarity=0.405 Sum_probs=40.8
Q ss_pred CCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCc
Q 041382 182 MTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYD 246 (600)
Q Consensus 182 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~ 246 (600)
.-|++++|+++.++.+...+. .+++++|+||||||||++++++|+.++.+
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~---------------~~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAK---------------QKRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHH---------------cCCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 568899999988877665553 12489999999999999999999999654
No 248
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.13 E-value=5.6e-06 Score=96.42 Aligned_cols=171 Identities=18% Similarity=0.202 Sum_probs=113.3
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHh-CHHHHHHhCCCCC-c-ceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecC
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRR-GKEYYRKIGKVWK-R-GYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLS 253 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~-~~~~y~~~g~~~~-r-giLL~GppGtGKTsla~alA~~l~~~~~~l~~~ 253 (600)
.-..|.....+.|....-..+.+.+...-. .+..|...+.... . ..|++||||+|||+.+.++|..+|+.++..|.+
T Consensus 312 ~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas 391 (871)
T KOG1968|consen 312 EKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNAS 391 (871)
T ss_pred cccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCcc
Confidence 566777778888888777777777766522 2223333222111 2 369999999999999999999999999999999
Q ss_pred ccCChhHHHHHHhhCC--------------------CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHh
Q 041382 254 VVTSDSSLEYLLLHVP--------------------NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNA 313 (600)
Q Consensus 254 ~~~~~~~l~~~~~~~~--------------------~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ 313 (600)
...++..+...+..+. .-.||++||+|.+.+ .+|+. -..++.+...
T Consensus 392 ~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~-~dRg~-------------v~~l~~l~~k 457 (871)
T KOG1968|consen 392 DVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG-EDRGG-------------VSKLSSLCKK 457 (871)
T ss_pred ccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc-hhhhh-------------HHHHHHHHHh
Confidence 8877666654443321 123999999998864 33321 1223333331
Q ss_pred hcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcC
Q 041382 314 IDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIN 372 (600)
Q Consensus 314 ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~ 372 (600)
.-+-+|+|+|.........+. |-+.-++|+-|+.++...-+..++..+
T Consensus 458 ---------s~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se 505 (871)
T KOG1968|consen 458 ---------SSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSE 505 (871)
T ss_pred ---------ccCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhccc
Confidence 124588888876655543333 444679999999999877666666543
No 249
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.13 E-value=2.2e-05 Score=86.54 Aligned_cols=89 Identities=17% Similarity=0.219 Sum_probs=60.4
Q ss_pred ccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCChhH
Q 041382 184 FGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTSDSS 260 (600)
Q Consensus 184 f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~~~~ 260 (600)
+..++|.......+.+.+...... ...+|++|++||||+++|+++.... +.+++.++|..+....-
T Consensus 142 ~~~ii~~S~~~~~~~~~~~~~a~~-----------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTAKIALS-----------QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL 210 (457)
T ss_pred ccceecccHHHhHHHHHHHHHcCC-----------CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH
Confidence 445666655555555555433321 2479999999999999999998764 57999999998854322
Q ss_pred HHHHHhh-----------------CCCcceeeecchhhhh
Q 041382 261 LEYLLLH-----------------VPNRSILVVEDIDCSI 283 (600)
Q Consensus 261 l~~~~~~-----------------~~~~sIL~iDeiD~l~ 283 (600)
-..+|.. .....+|||||||.+-
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~ 250 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMP 250 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhCC
Confidence 2233321 1235799999999884
No 250
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.10 E-value=0.00014 Score=75.20 Aligned_cols=119 Identities=16% Similarity=0.230 Sum_probs=82.7
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHcCC------------------------cEEEEecC-ccCChhHHHHHHhhCC---
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYMNY------------------------DIYNLNLS-VVTSDSSLEYLLLHVP--- 269 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l~~------------------------~~~~l~~~-~~~~~~~l~~~~~~~~--- 269 (600)
.+.+|||+|| +||+++|.++|..+-. +++.+... ...+...++.+.....
T Consensus 23 l~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~p 100 (290)
T PRK07276 23 LNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQSG 100 (290)
T ss_pred cceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhCc
Confidence 4569999996 6899999999986521 23333221 1123456666554442
Q ss_pred ---CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCC
Q 041382 270 ---NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGR 346 (600)
Q Consensus 270 ---~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgR 346 (600)
..-|++||++|.+-. ..-+.||..++.. +.+.++|.+|++++.|-|.+++ |
T Consensus 101 ~~~~~kV~II~~ad~m~~--------------------~AaNaLLKtLEEP----p~~t~~iL~t~~~~~lLpTI~S--R 154 (290)
T PRK07276 101 YEGKQQVFIIKDADKMHV--------------------NAANSLLKVIEEP----QSEIYIFLLTNDENKVLPTIKS--R 154 (290)
T ss_pred ccCCcEEEEeehhhhcCH--------------------HHHHHHHHHhcCC----CCCeEEEEEECChhhCchHHHH--c
Confidence 346999999998832 3567899988864 3558999999999999999999 9
Q ss_pred cceEEEeCCCCHHHHHHHHH
Q 041382 347 MDRHINLSYCTFSTFKQLAA 366 (600)
Q Consensus 347 fd~~I~~~~p~~e~r~~il~ 366 (600)
+ .+|.|+. +.+...+++.
T Consensus 155 c-q~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 155 T-QIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred c-eeeeCCC-cHHHHHHHHH
Confidence 8 6888976 5555445444
No 251
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.07 E-value=6.7e-05 Score=92.06 Aligned_cols=153 Identities=17% Similarity=0.188 Sum_probs=91.0
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcE---EEEecC
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDI---YNLNLS 253 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~---~~l~~~ 253 (600)
...++..+++++|.++..+++...+. .+....+-+-++||+|+||||||+++++.+..++ +.++..
T Consensus 176 ~~~~~~~~~~~vG~~~~l~~l~~lL~-----------l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~ 244 (1153)
T PLN03210 176 NLTPSNDFEDFVGIEDHIAKMSSLLH-----------LESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRA 244 (1153)
T ss_pred ccccCcccccccchHHHHHHHHHHHc-----------cccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecc
Confidence 34456678999999888887776552 1223345688999999999999999988764322 112110
Q ss_pred ccC------C---------hhH-----HHHHHhh---------------CCCcceeeecchhhhhhhhccccCCCCCCCC
Q 041382 254 VVT------S---------DSS-----LEYLLLH---------------VPNRSILVVEDIDCSIKLQNRESQKGDEPAD 298 (600)
Q Consensus 254 ~~~------~---------~~~-----l~~~~~~---------------~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~ 298 (600)
.+. . ... +..++.. ..++.+|+|||+|...
T Consensus 245 ~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~--------------- 309 (1153)
T PLN03210 245 FISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQD--------------- 309 (1153)
T ss_pred ccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHH---------------
Confidence 000 0 000 1111110 1356799999987431
Q ss_pred CCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCc
Q 041382 299 SYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDI 371 (600)
Q Consensus 299 ~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~ 371 (600)
.+..+....+.. +.+--||+||. |..+++....++.++++.|+.++-.+++..+.-.
T Consensus 310 -------~l~~L~~~~~~~----~~GsrIIiTTr-----d~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~ 366 (1153)
T PLN03210 310 -------VLDALAGQTQWF----GSGSRIIVITK-----DKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFK 366 (1153)
T ss_pred -------HHHHHHhhCccC----CCCcEEEEEeC-----cHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcC
Confidence 122222222211 12234556666 3455554567889999999999999999887643
No 252
>PHA02774 E1; Provisional
Probab=98.05 E-value=2.5e-05 Score=86.46 Aligned_cols=58 Identities=24% Similarity=0.496 Sum_probs=43.7
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEE-EecCccCChhHHHHHHhhCCCcceeeecch
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYN-LNLSVVTSDSSLEYLLLHVPNRSILVVEDI 279 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~-l~~~~~~~~~~l~~~~~~~~~~sIL~iDei 279 (600)
|+|.++.++||||||||||+++.+|++.++..++. ++..+ ...+......-|++|||+
T Consensus 430 ~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s-------~FwLqpl~d~ki~vlDD~ 488 (613)
T PHA02774 430 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS-------HFWLQPLADAKIALLDDA 488 (613)
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc-------ccccchhccCCEEEEecC
Confidence 56666789999999999999999999999766654 55321 222444445569999998
No 253
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.02 E-value=4.9e-06 Score=88.69 Aligned_cols=95 Identities=18% Similarity=0.270 Sum_probs=58.3
Q ss_pred CCCCcceeeeCCCCCCHHHHHHHHHHHcCC-cEEEEecCccC------------ChhHHHHHHhhCCCc-ceeeecchhh
Q 041382 216 KVWKRGYLLYGPPGTGKSSLIAAMANYMNY-DIYNLNLSVVT------------SDSSLEYLLLHVPNR-SILVVEDIDC 281 (600)
Q Consensus 216 ~~~~rgiLL~GppGtGKTsla~alA~~l~~-~~~~l~~~~~~------------~~~~l~~~~~~~~~~-sIL~iDeiD~ 281 (600)
.++++|++||||+|+|||+|.-...+.+.. .-..+....+. ....+..+.....+. .||+|||+..
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~~~lLcfDEF~V 138 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKESRLLCFDEFQV 138 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCEEEEeeeec
Confidence 457899999999999999999999887743 11111111111 111122222222333 4999999974
Q ss_pred hhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCC
Q 041382 282 SIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNY 333 (600)
Q Consensus 282 l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~ 333 (600)
- +......+..|++.+-. .++++|+|+|+
T Consensus 139 ~-----------------DiaDAmil~rLf~~l~~------~gvvlVaTSN~ 167 (362)
T PF03969_consen 139 T-----------------DIADAMILKRLFEALFK------RGVVLVATSNR 167 (362)
T ss_pred c-----------------chhHHHHHHHHHHHHHH------CCCEEEecCCC
Confidence 3 11234567777776532 34899999996
No 254
>PRK15115 response regulator GlrR; Provisional
Probab=98.01 E-value=4.7e-05 Score=83.73 Aligned_cols=63 Identities=25% Similarity=0.316 Sum_probs=47.7
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCChhHHH-HHHhh-----------------CCCcceeeecc
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTSDSSLE-YLLLH-----------------VPNRSILVVED 278 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~~~~l~-~~~~~-----------------~~~~sIL~iDe 278 (600)
..++++|++||||+++|+++.... +.+++.++|..+... .+. .+|.. ......|||||
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~-~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~ 236 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQ-LLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHH-HHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEc
Confidence 468999999999999999998875 579999999987432 232 23221 12457899999
Q ss_pred hhhhh
Q 041382 279 IDCSI 283 (600)
Q Consensus 279 iD~l~ 283 (600)
||.+-
T Consensus 237 i~~l~ 241 (444)
T PRK15115 237 IGDMP 241 (444)
T ss_pred cccCC
Confidence 99884
No 255
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.91 E-value=4.4e-05 Score=74.41 Aligned_cols=114 Identities=16% Similarity=0.217 Sum_probs=60.7
Q ss_pred eeeeCCCCCCHHHHHHHH-HHH---cCCcEEEEecCccC-----C---------------------hhHHHHHHhhCCCc
Q 041382 222 YLLYGPPGTGKSSLIAAM-ANY---MNYDIYNLNLSVVT-----S---------------------DSSLEYLLLHVPNR 271 (600)
Q Consensus 222 iLL~GppGtGKTsla~al-A~~---l~~~~~~l~~~~~~-----~---------------------~~~l~~~~~~~~~~ 271 (600)
++++|.||+|||+.|-.. +.. -|.+++. +...+. . ...+. .....+..
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 80 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPD-DWRKLPKG 80 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHH-HHTTSGTT
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhh-hhcccCCC
Confidence 688999999999988665 433 2666665 444221 0 01121 22223368
Q ss_pred ceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEE
Q 041382 272 SILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHI 351 (600)
Q Consensus 272 sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I 351 (600)
+||+|||+...++ .|..... .....++.+... +..+.-||++|.++..+|+.+++ +.+.++
T Consensus 81 ~liviDEa~~~~~--~r~~~~~------------~~~~~~~~l~~h---Rh~g~diiliTQ~~~~id~~ir~--lve~~~ 141 (193)
T PF05707_consen 81 SLIVIDEAQNFFP--SRSWKGK------------KVPEIIEFLAQH---RHYGWDIILITQSPSQIDKFIRD--LVEYHY 141 (193)
T ss_dssp -EEEETTGGGTSB-----T-T----------------HHHHGGGGC---CCTT-EEEEEES-GGGB-HHHHC--CEEEEE
T ss_pred cEEEEECChhhcC--CCccccc------------cchHHHHHHHHh---CcCCcEEEEEeCCHHHHhHHHHH--HHheEE
Confidence 9999999999876 3332100 012233444322 22347899999999999999987 999888
Q ss_pred EeCCC
Q 041382 352 NLSYC 356 (600)
Q Consensus 352 ~~~~p 356 (600)
++.-+
T Consensus 142 ~~~k~ 146 (193)
T PF05707_consen 142 HCRKL 146 (193)
T ss_dssp EEEE-
T ss_pred EEEee
Confidence 87644
No 256
>PHA00729 NTP-binding motif containing protein
Probab=97.90 E-value=1.6e-05 Score=78.86 Aligned_cols=27 Identities=19% Similarity=0.490 Sum_probs=24.1
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcE
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDI 247 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~ 247 (600)
.++|+|+||||||++|.++|..++..+
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~~~l 45 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVFWKL 45 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 799999999999999999999876433
No 257
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.88 E-value=8.2e-05 Score=69.01 Aligned_cols=63 Identities=16% Similarity=0.371 Sum_probs=43.0
Q ss_pred eeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCC-----------------------------hhHH---HHHHh
Q 041382 222 YLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTS-----------------------------DSSL---EYLLL 266 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~-----------------------------~~~l---~~~~~ 266 (600)
++++||||+|||+++..++..+ +.+++.++...... .... ...+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999999877 45666655432211 0000 12233
Q ss_pred hCCCcceeeecchhhhhh
Q 041382 267 HVPNRSILVVEDIDCSIK 284 (600)
Q Consensus 267 ~~~~~sIL~iDeiD~l~~ 284 (600)
....+.+++|||+..+..
T Consensus 82 ~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 82 ERGGDDLIILDELTRLVR 99 (165)
T ss_pred hCCCCEEEEEEcHHHHHH
Confidence 345788999999998865
No 258
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.85 E-value=0.00017 Score=74.12 Aligned_cols=125 Identities=21% Similarity=0.190 Sum_probs=67.1
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHH--cC--Cc-EEEEecCccCChh------------------------HHHHHHhhC
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANY--MN--YD-IYNLNLSVVTSDS------------------------SLEYLLLHV 268 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~--l~--~~-~~~l~~~~~~~~~------------------------~l~~~~~~~ 268 (600)
..+-+.|+|++|+|||+||..+++. .. ++ ++-++++...+.. .+...+...
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 97 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLREL 97 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHH
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence 3457889999999999999999987 32 22 2334433322111 111111111
Q ss_pred --CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCC
Q 041382 269 --PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGR 346 (600)
Q Consensus 269 --~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgR 346 (600)
..+++|+|||++... .+..+...+-.. ..+.-||+||...... ...- .
T Consensus 98 L~~~~~LlVlDdv~~~~----------------------~~~~l~~~~~~~----~~~~kilvTTR~~~v~-~~~~---~ 147 (287)
T PF00931_consen 98 LKDKRCLLVLDDVWDEE----------------------DLEELREPLPSF----SSGSKILVTTRDRSVA-GSLG---G 147 (287)
T ss_dssp HCCTSEEEEEEEE-SHH----------------------HH-------HCH----HSS-EEEEEESCGGGG-TTHH---S
T ss_pred hccccceeeeeeecccc----------------------cccccccccccc----cccccccccccccccc-cccc---c
Confidence 348999999997542 122222222111 1124466677654321 1111 1
Q ss_pred cceEEEeCCCCHHHHHHHHHHhcCcC
Q 041382 347 MDRHINLSYCTFSTFKQLAANYLDIN 372 (600)
Q Consensus 347 fd~~I~~~~p~~e~r~~il~~~l~~~ 372 (600)
-...++++..+.++-.+++..+....
T Consensus 148 ~~~~~~l~~L~~~ea~~L~~~~~~~~ 173 (287)
T PF00931_consen 148 TDKVIELEPLSEEEALELFKKRAGRK 173 (287)
T ss_dssp CEEEEECSS--HHHHHHHHHHHHTSH
T ss_pred cccccccccccccccccccccccccc
Confidence 15789999999999999999887643
No 259
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.83 E-value=2.5e-05 Score=86.46 Aligned_cols=67 Identities=24% Similarity=0.273 Sum_probs=51.1
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc-CCcEEEEec
Q 041382 179 DHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM-NYDIYNLNL 252 (600)
Q Consensus 179 ~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l-~~~~~~l~~ 252 (600)
.+..-|+++.|.++++++|++.+..-.. .++ ..++.++|.||||+|||+|+++||+.+ .+++|.+..
T Consensus 70 ~ry~fF~d~yGlee~ieriv~~l~~Aa~------gl~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 70 KRYPAFEEFYGMEEAIEQIVSYFRHAAQ------GLE-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred ccccchhcccCcHHHHHHHHHHHHHHHH------hcC-CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 3445699999999999999987743332 122 234578899999999999999999988 467887644
No 260
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.83 E-value=1.3e-05 Score=71.51 Aligned_cols=31 Identities=29% Similarity=0.703 Sum_probs=27.9
Q ss_pred eeeeCCCCCCHHHHHHHHHHHcCCcEEEEec
Q 041382 222 YLLYGPPGTGKSSLIAAMANYMNYDIYNLNL 252 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l~~~~~~l~~ 252 (600)
|++.|||||||||+++.+|+.+|.+++.++-
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 6899999999999999999999988876663
No 261
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.82 E-value=7.4e-05 Score=73.47 Aligned_cols=40 Identities=23% Similarity=0.384 Sum_probs=33.6
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCc
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSV 254 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~ 254 (600)
|++.+.-++++||||||||+++..+|... +..++.++...
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 67778889999999999999999888643 66788888765
No 262
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.80 E-value=0.00017 Score=79.18 Aligned_cols=86 Identities=20% Similarity=0.225 Sum_probs=58.3
Q ss_pred ccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCChhHHH
Q 041382 186 TLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTSDSSLE 262 (600)
Q Consensus 186 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~~~~l~ 262 (600)
.++|.......+...+..+. +....++++|.+||||+++++++.... +.+++.++|..+.. ..+.
T Consensus 140 ~lig~s~~~~~~~~~i~~~~-----------~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~-~~~~ 207 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVA-----------PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNE-SLLE 207 (441)
T ss_pred ceEecCHHHHHHHHHHhhcc-----------CCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCH-HHHH
Confidence 35555555555555443221 223579999999999999999997754 57899999998753 3333
Q ss_pred HH-Hhh-----------------CCCcceeeecchhhhh
Q 041382 263 YL-LLH-----------------VPNRSILVVEDIDCSI 283 (600)
Q Consensus 263 ~~-~~~-----------------~~~~sIL~iDeiD~l~ 283 (600)
.. |.. ...++.|||||||.+.
T Consensus 208 ~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~ 246 (441)
T PRK10365 208 SELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDIS 246 (441)
T ss_pred HHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCC
Confidence 32 221 1246789999999884
No 263
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.80 E-value=0.00022 Score=77.66 Aligned_cols=195 Identities=17% Similarity=0.167 Sum_probs=114.8
Q ss_pred CccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCChh
Q 041382 183 TFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTSDS 259 (600)
Q Consensus 183 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~~~ 259 (600)
.+..++|.....+++.+.+...-.. .-.+|++|++||||-.+|++|-... +.||+.+||..+..+-
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~s-----------~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAPS-----------DASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 4667899888888888877655442 2479999999999999999998876 4699999999986332
Q ss_pred HHHHHHhhC-----------------CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcC-ccccC
Q 041382 260 SLEYLLLHV-----------------PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDG-LLCCC 321 (600)
Q Consensus 260 ~l~~~~~~~-----------------~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg-~~~~~ 321 (600)
-=..+|... .....||||||..+-- ..-..||..+.. -...-
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl--------------------~~Q~kLLRvLqe~~~~rv 267 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPL--------------------ELQVKLLRVLQEREFERV 267 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccCCH--------------------HHHHHHHHHHHcCeeEec
Confidence 222233311 2457999999976621 233456666641 11111
Q ss_pred C------CeeEEEEecCCcCcCCHHHHhcCCcc-------eEEEeCCCCHHHHHH----HHHHhcCcCCCccHHHHHHH-
Q 041382 322 G------DEKITVFTTNYKDRIDPALLRAGRMD-------RHINLSYCTFSTFKQ----LAANYLDINDHDLYCHIEKL- 383 (600)
Q Consensus 322 ~------~~~iiI~TTN~~~~Ld~aLlrpgRfd-------~~I~~~~p~~e~r~~----il~~~l~~~~~~~~~~i~~l- 383 (600)
| -++-||++||.. |. ....-|+|- ..+.+..|.--+|.+ |+..|+... ....
T Consensus 268 G~~~~i~vdvRiIaaT~~d--L~-~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~-------~~~~~ 337 (464)
T COG2204 268 GGNKPIKVDVRIIAATNRD--LE-EEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRF-------AAELG 337 (464)
T ss_pred CCCcccceeeEEEeecCcC--HH-HHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHH-------HHHcC
Confidence 1 246788999862 22 333345552 244555555444543 555555321 0001
Q ss_pred hhhcCCCHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc
Q 041382 384 MEKVKVSPAEVAGELMKAKGSKTSLEDFITYLESKES 420 (600)
Q Consensus 384 ~~~~~~t~a~i~~~l~~~~~~~~al~~l~~~l~~~~~ 420 (600)
.....+|+..+... +...-| ..++.|...+++...
T Consensus 338 ~~~~~~s~~a~~~L-~~y~WP-GNVREL~N~ver~~i 372 (464)
T COG2204 338 RPPKGFSPEALAAL-LAYDWP-GNVRELENVVERAVI 372 (464)
T ss_pred CCCCCCCHHHHHHH-HhCCCC-hHHHHHHHHHHHHHh
Confidence 12234666655543 333333 345677777766543
No 264
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.78 E-value=9.3e-05 Score=82.18 Aligned_cols=158 Identities=22% Similarity=0.261 Sum_probs=91.6
Q ss_pred ccccChhHHHHHHHHHHHHHhCHHHHHHhC-CCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCc-------cC-
Q 041382 186 TLVMDGDLKETVLNDLDCFRRGKEYYRKIG-KVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSV-------VT- 256 (600)
Q Consensus 186 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g-~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~-------~~- 256 (600)
.|.|.+++|+.++-.| |=-....+...| ....-++||+|-||||||-|.+.+++.+-.-.|.=--++ ..
T Consensus 430 sIye~edvKkglLLqL--fGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQL--FGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhHHHHH--hcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 4678888888876443 332233333333 112237999999999999999999998866655421110 00
Q ss_pred ChhHHHHHHhhC-----CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhc---------CccccCC
Q 041382 257 SDSSLEYLLLHV-----PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAID---------GLLCCCG 322 (600)
Q Consensus 257 ~~~~l~~~~~~~-----~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ld---------g~~~~~~ 322 (600)
-+.+-+.+..+. ....|-.|||+|.+-. .+-+.|+..|+ |+...-+
T Consensus 508 rd~dtkqlVLesGALVLSD~GiCCIDEFDKM~d--------------------StrSvLhEvMEQQTvSIAKAGII~sLN 567 (804)
T KOG0478|consen 508 KDPDTRQLVLESGALVLSDNGICCIDEFDKMSD--------------------STRSVLHEVMEQQTLSIAKAGIIASLN 567 (804)
T ss_pred ecCccceeeeecCcEEEcCCceEEchhhhhhhH--------------------HHHHHHHHHHHHhhhhHhhcceeeecc
Confidence 011111222221 3577899999999843 12344555443 3333322
Q ss_pred CeeEEEEecCCcC-------------cCCHHHHhcCCcceEEEe-CCCCHHHHHHHHHH
Q 041382 323 DEKITVFTTNYKD-------------RIDPALLRAGRMDRHINL-SYCTFSTFKQLAAN 367 (600)
Q Consensus 323 ~~~iiI~TTN~~~-------------~Ld~aLlrpgRfd~~I~~-~~p~~e~r~~il~~ 367 (600)
..--|++++|..+ .|+|.|++ |||...-+ ..||+..=+.|...
T Consensus 568 AR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~~Dr~La~H 624 (804)
T KOG0478|consen 568 ARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDERSDRRLADH 624 (804)
T ss_pred ccceeeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchhHHHHHHHH
Confidence 3345778887322 36899999 99976444 77777633444443
No 265
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.77 E-value=5.4e-05 Score=75.09 Aligned_cols=22 Identities=50% Similarity=0.893 Sum_probs=19.9
Q ss_pred cceeeeCCCCCCHHHHHHHHHH
Q 041382 220 RGYLLYGPPGTGKSSLIAAMAN 241 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~ 241 (600)
.-+|+||+||+|||++|+.+++
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcCC
Confidence 4599999999999999999974
No 266
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.74 E-value=0.00031 Score=83.96 Aligned_cols=125 Identities=22% Similarity=0.318 Sum_probs=88.3
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCChhHHHHHH--------------------hhCCCcceeeecc
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYLL--------------------LHVPNRSILVVED 278 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~~~~l~~~~--------------------~~~~~~sIL~iDe 278 (600)
.+++||-|.||+|||+|+.|+|+..|..++.++++.- +++..+| .......-+++||
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQ---TdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDE 1619 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQ---TDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDE 1619 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeecccc---chHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeeh
Confidence 3589999999999999999999999999999998754 2333333 2223456788899
Q ss_pred hhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcC-----------ccccCCCeeEEEEecCC------cCcCCHHH
Q 041382 279 IDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDG-----------LLCCCGDEKITVFTTNY------KDRIDPAL 341 (600)
Q Consensus 279 iD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg-----------~~~~~~~~~iiI~TTN~------~~~Ld~aL 341 (600)
+... ++..+.+|=..+|. ..+. -.+..|++|-|. ...||..+
T Consensus 1620 iNLa--------------------SQSVlEGLNacLDhR~eayIPEld~~f~~-HpnfrVFAaqNPq~qggGRKgLPkSF 1678 (4600)
T COG5271 1620 INLA--------------------SQSVLEGLNACLDHRREAYIPELDKTFDV-HPNFRVFAAQNPQDQGGGRKGLPKSF 1678 (4600)
T ss_pred hhhh--------------------HHHHHHHHHHHHhhccccccccccceeec-cCCeeeeeecCchhcCCCcccCCHHH
Confidence 8643 23455555555543 2222 234566666653 34689999
Q ss_pred HhcCCcceEEEeCCCCHHHHHHHHHHhcC
Q 041382 342 LRAGRMDRHINLSYCTFSTFKQLAANYLD 370 (600)
Q Consensus 342 lrpgRfd~~I~~~~p~~e~r~~il~~~l~ 370 (600)
+. || ..|++...+.+....|+.....
T Consensus 1679 ~n--RF-svV~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1679 LN--RF-SVVKMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred hh--hh-heEEecccccchHHHHHHhhCC
Confidence 99 99 5899988888888777776554
No 267
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=97.71 E-value=0.00021 Score=77.24 Aligned_cols=90 Identities=17% Similarity=0.294 Sum_probs=67.9
Q ss_pred CCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCCh
Q 041382 182 MTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTSD 258 (600)
Q Consensus 182 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~~ 258 (600)
..+..++|.......+++.++....+ .-.+||.|..||||-.+|++|-... +.|++.+||..+...
T Consensus 220 ~~~~~iIG~S~am~~ll~~i~~VA~S-----------d~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPes 288 (550)
T COG3604 220 LEVGGIIGRSPAMRQLLKEIEVVAKS-----------DSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPES 288 (550)
T ss_pred cccccceecCHHHHHHHHHHHHHhcC-----------CCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchH
Confidence 46788999999988888888765543 2489999999999999999998866 679999999988522
Q ss_pred ---hHH----HHHHhhC----------CCcceeeecchhhh
Q 041382 259 ---SSL----EYLLLHV----------PNRSILVVEDIDCS 282 (600)
Q Consensus 259 ---~~l----~~~~~~~----------~~~sIL~iDeiD~l 282 (600)
++| +..|..+ ....-||+|||.-+
T Consensus 289 LlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGel 329 (550)
T COG3604 289 LLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGEL 329 (550)
T ss_pred HHHHHHhcccccccccchhccCcceeecCCCeEechhhccC
Confidence 221 1223222 24679999999765
No 268
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.69 E-value=3.6e-05 Score=72.88 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=30.5
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
.+..++|+||||||||++++++|..++.++++.+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 4568999999999999999999999999888654
No 269
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.67 E-value=0.00029 Score=71.44 Aligned_cols=43 Identities=21% Similarity=0.113 Sum_probs=32.4
Q ss_pred cCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHH
Q 041382 334 KDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCH 379 (600)
Q Consensus 334 ~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~ 379 (600)
|.-+|-.|+. |+ ..|...+.+.++.++|++.....++....++
T Consensus 339 phGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~ 381 (454)
T KOG2680|consen 339 PHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPD 381 (454)
T ss_pred CCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHH
Confidence 7788999999 88 6888888888888899987665544443333
No 270
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.65 E-value=2.3e-05 Score=82.87 Aligned_cols=162 Identities=22% Similarity=0.215 Sum_probs=85.3
Q ss_pred ccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCc----cC-----
Q 041382 186 TLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSV----VT----- 256 (600)
Q Consensus 186 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~----~~----- 256 (600)
.+.|.+.+|..|.-.+..-...... ........-++||.|.||||||.|.+.+++.....+|.---+. +.
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~~~-~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~~~ 103 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKNDP-DGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASVSR 103 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCCCC-T-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEECC
T ss_pred cCcCcHHHHHHHHHHHHhccccccc-cccccccccceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccceecc
Confidence 4678888888776443211110000 0000112237999999999999999999877666665432111 10
Q ss_pred ----ChhHHHH-HHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCc---------cccCC
Q 041382 257 ----SDSSLEY-LLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGL---------LCCCG 322 (600)
Q Consensus 257 ----~~~~l~~-~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~---------~~~~~ 322 (600)
+++.+.. .+. .....|++|||+|.+-. .....|+..|+.- ...-+
T Consensus 104 d~~~~~~~leaGalv-lad~GiccIDe~dk~~~--------------------~~~~~l~eaMEqq~isi~kagi~~~l~ 162 (331)
T PF00493_consen 104 DPVTGEWVLEAGALV-LADGGICCIDEFDKMKE--------------------DDRDALHEAMEQQTISIAKAGIVTTLN 162 (331)
T ss_dssp CGGTSSECEEE-HHH-HCTTSEEEECTTTT--C--------------------HHHHHHHHHHHCSCEEECTSSSEEEEE
T ss_pred ccccceeEEeCCchh-cccCceeeecccccccc--------------------hHHHHHHHHHHcCeeccchhhhccccc
Confidence 1111111 111 13678999999998732 2345677777542 11111
Q ss_pred CeeEEEEecCCcC-------------cCCHHHHhcCCcceEEEe-CCCCHHHHHHHHHHhcCc
Q 041382 323 DEKITVFTTNYKD-------------RIDPALLRAGRMDRHINL-SYCTFSTFKQLAANYLDI 371 (600)
Q Consensus 323 ~~~iiI~TTN~~~-------------~Ld~aLlrpgRfd~~I~~-~~p~~e~r~~il~~~l~~ 371 (600)
...-|++++|... .+++.|++ |||..+.+ ..|+.+.=..+.+..+..
T Consensus 163 ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~ 223 (331)
T PF00493_consen 163 ARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDS 223 (331)
T ss_dssp ---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTT
T ss_pred chhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEec
Confidence 2346788888655 47899999 99988765 677766666677766654
No 271
>PRK07261 topology modulation protein; Provisional
Probab=97.63 E-value=0.00015 Score=69.37 Aligned_cols=100 Identities=19% Similarity=0.282 Sum_probs=61.2
Q ss_pred eeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCChhHHHHHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCC
Q 041382 222 YLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYR 301 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~ 301 (600)
+++.|+||+||||+++.++..++.+++.+|.-....+ +. + .
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~------~~-----------~----------------------~ 43 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN------WQ-----------E----------------------R 43 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc------cc-----------c----------------------C
Confidence 7899999999999999999999988877663221100 00 0 0
Q ss_pred ChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcC
Q 041382 302 GPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLD 370 (600)
Q Consensus 302 ~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~ 370 (600)
.....+..+...+. . + . .|+-.|+...+-+..+. ++|..|.+..|.......++++.+.
T Consensus 44 ~~~~~~~~~~~~~~----~--~-~-wIidg~~~~~~~~~~l~--~ad~vI~Ld~p~~~~~~R~lkR~~~ 102 (171)
T PRK07261 44 DDDDMIADISNFLL----K--H-D-WIIDGNYSWCLYEERMQ--EADQIIFLNFSRFNCLYRAFKRYLK 102 (171)
T ss_pred CHHHHHHHHHHHHh----C--C-C-EEEcCcchhhhHHHHHH--HCCEEEEEcCCHHHHHHHHHHHHHH
Confidence 00011111122221 1 2 2 34444444434345556 8899999999988888888887653
No 272
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.60 E-value=0.00056 Score=73.51 Aligned_cols=151 Identities=15% Similarity=0.140 Sum_probs=77.1
Q ss_pred cceeeeCCCCCCHHHHHHHHHHH--c--CCcEEEEecCccCChhHHHHHHhhCCCcceeeecchhhhhhhhccccCCCCC
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANY--M--NYDIYNLNLSVVTSDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDE 295 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~--l--~~~~~~l~~~~~~~~~~l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~ 295 (600)
.++++.||||||||+++.+++.+ + | .......+..+-. ...+......-+|+|||+..+.-
T Consensus 210 ~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~-~~~lg~v~~~DlLI~DEvgylp~----------- 274 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIS-TRQIGLVGRWDVVAFDEVATLKF----------- 274 (449)
T ss_pred CcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHH-HHHHhhhccCCEEEEEcCCCCcC-----------
Confidence 48999999999999999998887 2 3 1112222211111 13344445788999999976421
Q ss_pred CCCCCCChHHHHHHHHHhhc-CccccCCC------eeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCH---HHHHHHH
Q 041382 296 PADSYRGPQVTLAGLLNAID-GLLCCCGD------EKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTF---STFKQLA 365 (600)
Q Consensus 296 ~~~~~~~~~~~ls~lL~~ld-g~~~~~~~------~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~---e~r~~il 365 (600)
...+..++.|-+.|. |.++.... ..++++-+|+ ..+.-+.. .++.-|.|.. .++..=+
T Consensus 275 -----~~~~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi~~--~v~~~~~~-----~~Lf~~lP~~~~DsAflDRi 342 (449)
T TIGR02688 275 -----AKPKELIGILKNYMESGSFTRGDETKSSDASFVFLGNVPL--TSEHMVKN-----SDLFSPLPEFMRDSAFLDRI 342 (449)
T ss_pred -----CchHHHHHHHHHHHHhCceeccceeeeeeeEEEEEcccCC--cchhhcCc-----ccccccCChhhhhhHHHHhh
Confidence 112234556666664 33332211 1344443333 22222212 2333355544 2444455
Q ss_pred HHhcCcCCCccHHHHHHHhhhcCCCHHHHHHHH
Q 041382 366 ANYLDINDHDLYCHIEKLMEKVKVSPAEVAGEL 398 (600)
Q Consensus 366 ~~~l~~~~~~~~~~i~~l~~~~~~t~a~i~~~l 398 (600)
..|+.....+-... +.+....++...++++.|
T Consensus 343 H~yiPGWeipk~~~-e~~t~~yGl~~DylsE~l 374 (449)
T TIGR02688 343 HGYLPGWEIPKIRK-EMFSNGYGFVVDYFAEAL 374 (449)
T ss_pred hccCCCCcCccCCH-HHcccCCcchHHHHHHHH
Confidence 55666554333221 234445566556666555
No 273
>PRK08118 topology modulation protein; Reviewed
Probab=97.55 E-value=6.2e-05 Score=71.69 Aligned_cols=100 Identities=20% Similarity=0.200 Sum_probs=62.9
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCChhHHHHHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCC
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSY 300 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~ 300 (600)
-+++.||||+||||+|+.||+.++.+++.+|.-... |.-.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~--------------~~w~-------------------------- 42 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK--------------PNWE-------------------------- 42 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc--------------cCCc--------------------------
Confidence 589999999999999999999999999888742110 0000
Q ss_pred CChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcC
Q 041382 301 RGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLD 370 (600)
Q Consensus 301 ~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~ 370 (600)
.........++..+- .. ++ .|+-.|....++..+ . +.|..|.+..|.......++++.+.
T Consensus 43 ~~~~~~~~~~~~~~~---~~--~~--wVidG~~~~~~~~~l-~--~~d~vi~Ld~p~~~~~~R~~~R~~~ 102 (167)
T PRK08118 43 GVPKEEQITVQNELV---KE--DE--WIIDGNYGGTMDIRL-N--AADTIIFLDIPRTICLYRAFKRRVQ 102 (167)
T ss_pred CCCHHHHHHHHHHHh---cC--CC--EEEeCCcchHHHHHH-H--hCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 000011111222111 11 12 445666666666444 3 7899999999988887778877664
No 274
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.55 E-value=0.00043 Score=71.45 Aligned_cols=156 Identities=17% Similarity=0.189 Sum_probs=97.0
Q ss_pred ccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHH---HHHcCCcEEEEecCccC-C-h--
Q 041382 186 TLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAM---ANYMNYDIYNLNLSVVT-S-D-- 258 (600)
Q Consensus 186 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~al---A~~l~~~~~~l~~~~~~-~-~-- 258 (600)
.+.|..+..+.+.+.+..-....+ ...+++.||.|+|||.++... +.+.|-+++.+-+.... . .
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gE---------snsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGE---------SNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcC---------CCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 456777777777777655443221 348999999999999987744 33677788776654432 1 1
Q ss_pred -----------------------hHHHHHHhhC-------CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHH
Q 041382 259 -----------------------SSLEYLLLHV-------PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLA 308 (600)
Q Consensus 259 -----------------------~~l~~~~~~~-------~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls 308 (600)
..+.+++... ..+.|.++||||.+.+ ..+.++
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~-----------------h~rQtl- 157 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAP-----------------HSRQTL- 157 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhcccc-----------------chhhHH-
Confidence 1222222222 1245667789998864 122233
Q ss_pred HHHHhhcCccccCCCeeEEEEecCCc---CcCCHHHHhcCCcceE-EEeC-CCCHHHHHHHHHHhcCcC
Q 041382 309 GLLNAIDGLLCCCGDEKITVFTTNYK---DRIDPALLRAGRMDRH-INLS-YCTFSTFKQLAANYLDIN 372 (600)
Q Consensus 309 ~lL~~ldg~~~~~~~~~iiI~TTN~~---~~Ld~aLlrpgRfd~~-I~~~-~p~~e~r~~il~~~l~~~ 372 (600)
+.|.+|-..+. ..++.||+-|.+- +.|...+.+ ||.+. |+|+ ....++...++++.+...
T Consensus 158 -lYnlfDisqs~-r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll~v~ 222 (408)
T KOG2228|consen 158 -LYNLFDISQSA-RAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLLSVP 222 (408)
T ss_pred -HHHHHHHHhhc-CCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHhcCC
Confidence 55666655433 3457777766544 455677778 99765 7774 446788999999988653
No 275
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.54 E-value=0.00037 Score=72.97 Aligned_cols=113 Identities=17% Similarity=0.198 Sum_probs=62.0
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCC---------------------hhHHH---HHHhh
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTS---------------------DSSLE---YLLLH 267 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~---------------------~~~l~---~~~~~ 267 (600)
|+|..+.+++|||||||||+|+-.++... +.++..++.....+ ..... ..+..
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 67777789999999999999987765543 56666665433211 11111 11122
Q ss_pred CCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecC
Q 041382 268 VPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTN 332 (600)
Q Consensus 268 ~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN 332 (600)
...+.+||||-+-++.+...-.+..++ .........++.+|..|.+.....+ +.+|+|..
T Consensus 131 ~~~~~lIVIDSv~al~~~~E~e~~~g~---~~~~~~aR~m~~~lr~L~~~l~~~~--~tvi~tNQ 190 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPKAEIEGEMGD---SHVGLQARLMSQALRKLTGALSKSN--TTAIFINQ 190 (321)
T ss_pred ccCCcEEEEcchhhhccchhhcccccc---cchhHHHHHHHHHHHHHHHHHHhCC--CEEEEEec
Confidence 246889999999988641111111000 0011222344566666655544433 66666644
No 276
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.54 E-value=0.00035 Score=74.69 Aligned_cols=105 Identities=17% Similarity=0.254 Sum_probs=64.0
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHc----C-CcEEEEecCccC----------------------ChhHHHHHHhhCCCc
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYM----N-YDIYNLNLSVVT----------------------SDSSLEYLLLHVPNR 271 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l----~-~~~~~l~~~~~~----------------------~~~~l~~~~~~~~~~ 271 (600)
++.++|.||+|+||||++..||..+ | ..+..+....+. +...+...+......
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 4578899999999999999999864 3 244444433321 223344555555667
Q ss_pred ceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHh
Q 041382 272 SILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLR 343 (600)
Q Consensus 272 sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlr 343 (600)
.+|+||..... .....+.+.+..+.+.... -..++++-+|+..+.++..+.+
T Consensus 217 DlVLIDTaG~~-------------------~~d~~l~e~La~L~~~~~~-~~~lLVLsAts~~~~l~evi~~ 268 (374)
T PRK14722 217 HMVLIDTIGMS-------------------QRDRTVSDQIAMLHGADTP-VQRLLLLNATSHGDTLNEVVQA 268 (374)
T ss_pred CEEEEcCCCCC-------------------cccHHHHHHHHHHhccCCC-CeEEEEecCccChHHHHHHHHH
Confidence 88888887422 1123456666666554221 1235555677777777765543
No 277
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.50 E-value=0.00087 Score=72.74 Aligned_cols=125 Identities=16% Similarity=0.143 Sum_probs=72.5
Q ss_pred HHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEE-ecCccCChhHHH---HHHhhCC--Ccceeeecchhhhhh
Q 041382 211 YRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNL-NLSVVTSDSSLE---YLLLHVP--NRSILVVEDIDCSIK 284 (600)
Q Consensus 211 y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l-~~~~~~~~~~l~---~~~~~~~--~~sIL~iDeiD~l~~ 284 (600)
.+.....++ -++++||.+|||||+++-+...+.-.++.+ .+........+. ..+.... .++.||||||+++-+
T Consensus 30 ~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v~~ 108 (398)
T COG1373 30 IKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNVPD 108 (398)
T ss_pred HhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEecccCchh
Confidence 333444444 789999999999999988888876554433 343333333332 2222222 458999999988732
Q ss_pred hhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCc-CcCCHHHHhcCCcceEEEeCCCCHHHHHH
Q 041382 285 LQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYK-DRIDPALLRAGRMDRHINLSYCTFSTFKQ 363 (600)
Q Consensus 285 ~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~-~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~ 363 (600)
-...+..+ .|.. .. -++|.++|.. -....+-.=|||. ..+++.+.+..++..
T Consensus 109 ------------------W~~~lk~l---~d~~----~~-~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 109 ------------------WERALKYL---YDRG----NL-DVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred ------------------HHHHHHHH---Hccc----cc-eEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 11122222 2221 11 2444444432 2223333347895 789999999999864
No 278
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.47 E-value=0.00051 Score=72.01 Aligned_cols=113 Identities=13% Similarity=0.190 Sum_probs=63.2
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccC---------------------ChhHHHHH---Hhh
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVT---------------------SDSSLEYL---LLH 267 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~---------------------~~~~l~~~---~~~ 267 (600)
|+|..+-+++|||||||||+|+-.+|... +..++.++...-. +..+.... +..
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 57777778999999999999999877543 6677777653311 11111111 122
Q ss_pred CCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecC
Q 041382 268 VPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTN 332 (600)
Q Consensus 268 ~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN 332 (600)
...+.+||||-+-++.+ |....+...+.........++++|..|.+.....+ +.+|+|..
T Consensus 131 s~~~~lIVIDSvaal~~---~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~--~~vI~tNQ 190 (325)
T cd00983 131 SGAVDLIVVDSVAALVP---KAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSN--TTVIFINQ 190 (325)
T ss_pred ccCCCEEEEcchHhhcc---cccccccccccchHHHHHHHHHHHHHHHHHHHhCC--CEEEEEEc
Confidence 24688999999998864 11110100000001123445666666665544433 56666544
No 279
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.47 E-value=0.00024 Score=72.33 Aligned_cols=92 Identities=17% Similarity=0.156 Sum_probs=59.3
Q ss_pred ccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC-----cEEE-----EecCcc
Q 041382 186 TLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY-----DIYN-----LNLSVV 255 (600)
Q Consensus 186 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~-----~~~~-----l~~~~~ 255 (600)
.|.|+.-+++.|+..+..++.++. -..|-.+=|||+|||||+..++.||+.+-. +++. .++..-
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 478999999999999988887642 011223448999999999999999997621 2211 111111
Q ss_pred CCh----hHHHHHHhh---CCCcceeeecchhhhh
Q 041382 256 TSD----SSLEYLLLH---VPNRSILVVEDIDCSI 283 (600)
Q Consensus 256 ~~~----~~l~~~~~~---~~~~sIL~iDeiD~l~ 283 (600)
..- .+|...+.. ....+|.++||+|.+-
T Consensus 157 ~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp 191 (344)
T KOG2170|consen 157 SKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLP 191 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcC
Confidence 111 222222222 2578999999999883
No 280
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.47 E-value=0.0002 Score=64.37 Aligned_cols=52 Identities=19% Similarity=0.091 Sum_probs=41.4
Q ss_pred ccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc
Q 041382 186 TLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 186 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l 243 (600)
.|.|++-+++.|...+..++.++. -..|--+-|+||||||||.+++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~------p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPN------PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCC------CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 478999999999999998887541 1112244599999999999999999985
No 281
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.45 E-value=0.00051 Score=68.01 Aligned_cols=39 Identities=26% Similarity=0.419 Sum_probs=31.6
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecC
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLS 253 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~ 253 (600)
|++.+.-++++||||||||+++..+|... +.+++.++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 67777779999999999999999998765 5677677653
No 282
>PF14516 AAA_35: AAA-like domain
Probab=97.45 E-value=0.0016 Score=68.92 Aligned_cols=132 Identities=18% Similarity=0.155 Sum_probs=78.5
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCC-----h--------------------------------
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTS-----D-------------------------------- 258 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~-----~-------------------------------- 258 (600)
+.-+.++||..+||||+...+.+.+ |+..+.+|+..+.+ .
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~ 110 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSK 110 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCCh
Confidence 3467899999999999999988766 78888888876531 0
Q ss_pred hH----HHH-HHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCC-----Cee--E
Q 041382 259 SS----LEY-LLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCG-----DEK--I 326 (600)
Q Consensus 259 ~~----l~~-~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~-----~~~--i 326 (600)
.. +.. ++.....|-||+|||||++++. . .....|+..+......+. ... +
T Consensus 111 ~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~---------------~---~~~~dF~~~LR~~~~~~~~~~~~~~L~li 172 (331)
T PF14516_consen 111 ISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEY---------------P---QIADDFFGLLRSWYEQRKNNPIWQKLRLI 172 (331)
T ss_pred hhHHHHHHHHHHhcCCCCEEEEEechhhhccC---------------c---chHHHHHHHHHHHHHhcccCcccceEEEE
Confidence 00 111 1223357889999999999741 0 122334444332211111 112 2
Q ss_pred EEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhc
Q 041382 327 TVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYL 369 (600)
Q Consensus 327 iI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l 369 (600)
++..|.. ......=.+|=-+...|.++.-+.++-..+++.|-
T Consensus 173 ~~~~t~~-~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~ 214 (331)
T PF14516_consen 173 LAGSTED-YIILDINQSPFNIGQPIELPDFTPEEVQELAQRYG 214 (331)
T ss_pred EecCccc-ccccCCCCCCcccccceeCCCCCHHHHHHHHHhhh
Confidence 2233321 11111113455567789999999999999988764
No 283
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.45 E-value=0.00049 Score=68.54 Aligned_cols=39 Identities=23% Similarity=0.401 Sum_probs=33.2
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecC
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLS 253 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~ 253 (600)
|++.+.-++++||||||||+++..+|... +.+++.+++.
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 67777778999999999999999998754 6788888876
No 284
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.44 E-value=0.00073 Score=64.85 Aligned_cols=31 Identities=29% Similarity=0.315 Sum_probs=24.2
Q ss_pred eeeeCCCCCCHHHHHHHHHHHc---CCcEEEEec
Q 041382 222 YLLYGPPGTGKSSLIAAMANYM---NYDIYNLNL 252 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l---~~~~~~l~~ 252 (600)
+|++||||||||+++..++... |.+++.++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 6899999999999999876643 556665553
No 285
>PRK03839 putative kinase; Provisional
Probab=97.43 E-value=0.00011 Score=70.52 Aligned_cols=30 Identities=27% Similarity=0.597 Sum_probs=27.8
Q ss_pred eeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 222 YLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
++|.|+||+||||+++.+|+.++++++.++
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 789999999999999999999999987765
No 286
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.42 E-value=0.00013 Score=67.68 Aligned_cols=31 Identities=23% Similarity=0.396 Sum_probs=28.4
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
.++|+||||+|||++++.+|..++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 3789999999999999999999999988666
No 287
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.41 E-value=0.002 Score=63.02 Aligned_cols=90 Identities=27% Similarity=0.415 Sum_probs=52.4
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCC----------hhHHHHHHhhC-----------CCcceee
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTS----------DSSLEYLLLHV-----------PNRSILV 275 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~----------~~~l~~~~~~~-----------~~~sIL~ 275 (600)
+..++.||||||||++++.++..+ +..++.+..+.-.. ...+..++... ....+|+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 467889999999999999988765 56777665543211 11122222222 2347999
Q ss_pred ecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCC
Q 041382 276 VEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNY 333 (600)
Q Consensus 276 iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~ 333 (600)
|||+-.+.. ..+..++..+.. .+..+++|+=.+.
T Consensus 99 VDEasmv~~--------------------~~~~~ll~~~~~----~~~klilvGD~~Q 132 (196)
T PF13604_consen 99 VDEASMVDS--------------------RQLARLLRLAKK----SGAKLILVGDPNQ 132 (196)
T ss_dssp ESSGGG-BH--------------------HHHHHHHHHS-T-----T-EEEEEE-TTS
T ss_pred EecccccCH--------------------HHHHHHHHHHHh----cCCEEEEECCcch
Confidence 999976632 345556665543 2345777787664
No 288
>PRK13947 shikimate kinase; Provisional
Probab=97.40 E-value=0.00014 Score=69.03 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=29.6
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEEEec
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNLNL 252 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~l~~ 252 (600)
.++|.|+||||||++++.+|+.++.++++.|.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 58999999999999999999999999988763
No 289
>PRK05973 replicative DNA helicase; Provisional
Probab=97.39 E-value=0.00078 Score=67.67 Aligned_cols=38 Identities=24% Similarity=0.040 Sum_probs=28.9
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEec
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNL 252 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~ 252 (600)
|.+++.-+++.|+||+|||+++-.+|... |.+++.+++
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl 100 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL 100 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 56667789999999999999988776643 666655543
No 290
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.39 E-value=0.00042 Score=67.83 Aligned_cols=113 Identities=20% Similarity=0.242 Sum_probs=65.4
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCChhHHHHHHhhCCCcceeeecchhhhhhhhccccCCCC
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGD 294 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~ 294 (600)
|......++|.|+.|+|||++++.|+... +.=+.....++..+. .....-|+.+||++.+.. .
T Consensus 48 g~k~d~~lvl~G~QG~GKStf~~~L~~~~----~~d~~~~~~~kd~~~----~l~~~~iveldEl~~~~k----~----- 110 (198)
T PF05272_consen 48 GCKNDTVLVLVGKQGIGKSTFFRKLGPEY----FSDSINDFDDKDFLE----QLQGKWIVELDELDGLSK----K----- 110 (198)
T ss_pred CCcCceeeeEecCCcccHHHHHHHHhHHh----ccCccccCCCcHHHH----HHHHhHheeHHHHhhcch----h-----
Confidence 44445567899999999999999997662 211122222222222 223457899999987631 0
Q ss_pred CCCCCCCChHHHHHHHHHhh-cCcc-------ccCCCeeEEEEecCCcCcC-CHHHHhcCCcceEEEeCC
Q 041382 295 EPADSYRGPQVTLAGLLNAI-DGLL-------CCCGDEKITVFTTNYKDRI-DPALLRAGRMDRHINLSY 355 (600)
Q Consensus 295 ~~~~~~~~~~~~ls~lL~~l-dg~~-------~~~~~~~iiI~TTN~~~~L-d~aLlrpgRfd~~I~~~~ 355 (600)
....+..++..- |.+. ...+...++|+|||..+-| |+.=-| || ..|+++.
T Consensus 111 --------~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR--Rf-~~v~v~~ 169 (198)
T PF05272_consen 111 --------DVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR--RF-WPVEVSK 169 (198)
T ss_pred --------hHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe--EE-EEEEEcC
Confidence 112233333221 1111 1122346889999988765 666667 88 6777765
No 291
>PRK00625 shikimate kinase; Provisional
Probab=97.39 E-value=0.00014 Score=69.60 Aligned_cols=31 Identities=26% Similarity=0.548 Sum_probs=29.2
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
.++|.|+||+|||++++.+|+.++++++++|
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4899999999999999999999999998877
No 292
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.38 E-value=0.0017 Score=69.29 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=21.8
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCC
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNY 245 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~ 245 (600)
-.|++||||+|||+|++.|++....
T Consensus 171 R~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 171 RGLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred eEEEeCCCCCChhHHHHHHHHHHHh
Confidence 3788999999999999999997743
No 293
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.37 E-value=0.00014 Score=69.02 Aligned_cols=33 Identities=27% Similarity=0.363 Sum_probs=30.6
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCcEEEEec
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNL 252 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~ 252 (600)
+.+.|.|++|+||||+.+++|+.|+++|++.|.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~ 35 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQ 35 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchH
Confidence 468999999999999999999999999998873
No 294
>PRK13949 shikimate kinase; Provisional
Probab=97.37 E-value=0.00015 Score=69.14 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=29.2
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
.++|.||||+|||++++.+|+.+++++++.|
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5899999999999999999999999998876
No 295
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.36 E-value=0.0003 Score=73.21 Aligned_cols=122 Identities=19% Similarity=0.235 Sum_probs=69.7
Q ss_pred CCCCcceeeeCCCCCCHHHHHHHHHHHcCCcE-EEEecCccC--ChhHHHHHHhhC-----------CCcceeeecchhh
Q 041382 216 KVWKRGYLLYGPPGTGKSSLIAAMANYMNYDI-YNLNLSVVT--SDSSLEYLLLHV-----------PNRSILVVEDIDC 281 (600)
Q Consensus 216 ~~~~rgiLL~GppGtGKTsla~alA~~l~~~~-~~l~~~~~~--~~~~l~~~~~~~-----------~~~sIL~iDeiD~ 281 (600)
-.+++|+.||||-|.|||.|....-..+..+- ..+....+. --..+..+-... .+--||+|||+..
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~~~~~vLCfDEF~V 141 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDPLPPIADELAAETRVLCFDEFEV 141 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCCccHHHHHHHHhcCCEEEeeeeee
Confidence 34678999999999999999988877664322 112111111 001111111111 1235999999863
Q ss_pred hhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCC-cCcCCHHHHhcCCcceEEEeCCCCHHH
Q 041382 282 SIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNY-KDRIDPALLRAGRMDRHINLSYCTFST 360 (600)
Q Consensus 282 l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~-~~~Ld~aLlrpgRfd~~I~~~~p~~e~ 360 (600)
- +-.....++.|++.|-. .++++|+|+|. |+.|-+ +++.+.-.+|
T Consensus 142 t-----------------DI~DAMiL~rL~~~Lf~------~GV~lvaTSN~~P~~LY~-----dGlqR~~FLP------ 187 (367)
T COG1485 142 T-----------------DIADAMILGRLLEALFA------RGVVLVATSNTAPDNLYK-----DGLQRERFLP------ 187 (367)
T ss_pred c-----------------ChHHHHHHHHHHHHHHH------CCcEEEEeCCCChHHhcc-----cchhHHhhHH------
Confidence 2 11234577778877653 35999999994 454432 3333333333
Q ss_pred HHHHHHHhcCc
Q 041382 361 FKQLAANYLDI 371 (600)
Q Consensus 361 r~~il~~~l~~ 371 (600)
...++++++..
T Consensus 188 ~I~li~~~~~v 198 (367)
T COG1485 188 AIDLIKSHFEV 198 (367)
T ss_pred HHHHHHHheEE
Confidence 45677777654
No 296
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.36 E-value=0.0004 Score=82.44 Aligned_cols=141 Identities=20% Similarity=0.217 Sum_probs=86.7
Q ss_pred CCCCcceeeeCCCCCCHHHH-HHHHHHHcCCcEEEEecCccCC-hhHHHHHHhhC------------CC----cceeeec
Q 041382 216 KVWKRGYLLYGPPGTGKSSL-IAAMANYMNYDIYNLNLSVVTS-DSSLEYLLLHV------------PN----RSILVVE 277 (600)
Q Consensus 216 ~~~~rgiLL~GppGtGKTsl-a~alA~~l~~~~~~l~~~~~~~-~~~l~~~~~~~------------~~----~sIL~iD 277 (600)
....|+|+++||||+|||++ .-++-+.+-..++.++.+.-.. .+.+..+-... +. .-|||.|
T Consensus 1491 lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLFcD 1570 (3164)
T COG5245 1491 LNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLFCD 1570 (3164)
T ss_pred HhccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCCHHHHHHHHhhceeeccCCeEEEccCcchhheEEEee
Confidence 34568999999999999995 5678888888999998776543 33444333222 12 2499999
Q ss_pred chhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCC------CeeEEEEecCCcCcC-----CHHHHhcCC
Q 041382 278 DIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCG------DEKITVFTTNYKDRI-----DPALLRAGR 346 (600)
Q Consensus 278 eiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~------~~~iiI~TTN~~~~L-----d~aLlrpgR 346 (600)
||. + + ..+.-.+. ..-..+..|+ .=.|+|+... .++++++++|.+.+. +..++| |
T Consensus 1571 eIn-L-p-~~~~y~~~--------~vI~FlR~l~-e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r--~ 1636 (3164)
T COG5245 1571 EIN-L-P-YGFEYYPP--------TVIVFLRPLV-ERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIR--K 1636 (3164)
T ss_pred ccC-C-c-cccccCCC--------ceEEeeHHHH-HhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhc--C
Confidence 998 3 2 11111111 1111111121 2255665422 247888999976552 233443 2
Q ss_pred cceEEEeCCCCHHHHHHHHHHhcCc
Q 041382 347 MDRHINLSYCTFSTFKQLAANYLDI 371 (600)
Q Consensus 347 fd~~I~~~~p~~e~r~~il~~~l~~ 371 (600)
...|++.+|.-....+|...++..
T Consensus 1637 -~v~vf~~ype~~SL~~Iyea~l~~ 1660 (3164)
T COG5245 1637 -PVFVFCCYPELASLRNIYEAVLMG 1660 (3164)
T ss_pred -ceEEEecCcchhhHHHHHHHHHHH
Confidence 357888999999998888877753
No 297
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.36 E-value=0.0013 Score=65.96 Aligned_cols=38 Identities=26% Similarity=0.320 Sum_probs=30.7
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEec
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNL 252 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~ 252 (600)
|+|.+..++++||||||||+++..++... +.+++.++.
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 67888889999999999999999996542 566666654
No 298
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.35 E-value=0.00034 Score=79.51 Aligned_cols=161 Identities=19% Similarity=0.188 Sum_probs=86.9
Q ss_pred cccccChhHHHHHHHHHHHHHhCHHHHHHhC-CCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEec-Cc---cC---
Q 041382 185 GTLVMDGDLKETVLNDLDCFRRGKEYYRKIG-KVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNL-SV---VT--- 256 (600)
Q Consensus 185 ~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g-~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~-~~---~~--- 256 (600)
-++.|.+++|+.|.-.+ |-..+......+ +..--++||.|-||||||.|.+.+++.+-..+|.--- ++ +.
T Consensus 286 PsIyG~e~VKkAilLqL--fgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav 363 (682)
T COG1241 286 PSIYGHEDVKKAILLQL--FGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAV 363 (682)
T ss_pred ccccCcHHHHHHHHHHh--cCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEE
Confidence 35678888887775433 111111000000 0111258999999999999999999988777765211 11 11
Q ss_pred ChhHH-HHHHhhC-----CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCc---------cccC
Q 041382 257 SDSSL-EYLLLHV-----PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGL---------LCCC 321 (600)
Q Consensus 257 ~~~~l-~~~~~~~-----~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~---------~~~~ 321 (600)
..... -++..++ ..+.|.+|||+|.+-. ...+.+...|+.. ...-
T Consensus 364 ~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~--------------------~dr~aihEaMEQQtIsIaKAGI~atL 423 (682)
T COG1241 364 VRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNE--------------------EDRVAIHEAMEQQTISIAKAGITATL 423 (682)
T ss_pred EEccCCCeEEEeCCEEEEecCCEEEEEeccCCCh--------------------HHHHHHHHHHHhcEeeecccceeeec
Confidence 00000 0111122 3689999999997632 1223344455321 1000
Q ss_pred CCeeEEEEecCCcC-------------cCCHHHHhcCCcceEEEe-CCCCHHHHHHHHHHhc
Q 041382 322 GDEKITVFTTNYKD-------------RIDPALLRAGRMDRHINL-SYCTFSTFKQLAANYL 369 (600)
Q Consensus 322 ~~~~iiI~TTN~~~-------------~Ld~aLlrpgRfd~~I~~-~~p~~e~r~~il~~~l 369 (600)
+...-+++++|.+. .|+++|++ |||..+-+ ..|+.+.=..++...+
T Consensus 424 nARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~hil 483 (682)
T COG1241 424 NARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAEHIL 483 (682)
T ss_pred chhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHHHHH
Confidence 01123556677543 46899999 99977655 5666654344444433
No 299
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.35 E-value=0.0018 Score=69.69 Aligned_cols=26 Identities=42% Similarity=0.696 Sum_probs=23.1
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHc
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l 243 (600)
.++.++|+||+|+||||++..+|..+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999999876
No 300
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.34 E-value=0.0001 Score=67.54 Aligned_cols=26 Identities=38% Similarity=0.726 Sum_probs=23.2
Q ss_pred eeeeCCCCCCHHHHHHHHHHHcCCcE
Q 041382 222 YLLYGPPGTGKSSLIAAMANYMNYDI 247 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l~~~~ 247 (600)
+++.|||||||||+|+.++..++..+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~ 27 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVV 27 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEE
Confidence 68999999999999999999998333
No 301
>PF08740 BCS1_N: BCS1 N terminal; InterPro: IPR014851 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. This domain is found at the N terminus of the mitochondrial BSC1 subfamily, belonging to the AAA ATPase family. At2g21640 and BCS1 are both highly stress responsive genes which encode mitochondrial proteins. The promoter of BCS1 was not responsive to H2O2 or rotenone, but highly responsive to salicylic acid (SA). The SA dependent pathway represented by BCS1 is one of at least three distinctive pathways to regulate mitochondrial stress response at a transcriptional level []. The BCS1 product is a mitochondrial protein required for the assembly of respiratory complex III []. BCS1, a component of the inner membrane of mitochondria, belongs to the group of proteins with internal, noncleavable import signals. It has a transmembrane domain (amino acid residues 51 to 68), a presequence type helix (residues 69 to 83), and an import auxiliary region (residues 84 to 126) [].
Probab=97.33 E-value=0.012 Score=56.79 Aligned_cols=132 Identities=11% Similarity=0.143 Sum_probs=89.6
Q ss_pred cEEEEEecCCCCCcchHHHHHHHHhccCccCCCCCcceeEeccc----------------------CCCccceeeccCCc
Q 041382 40 EITMIIKESHDGSTNRLFKAVVTYLDGHALSNSVLPKRLTVGKN----------------------ENVRNFTYGLERNS 97 (600)
Q Consensus 40 ~~ti~i~e~~~~~~n~ly~a~~~YL~t~~~~~~~~~~~l~~~~~----------------------~~~~~~~~~~~~~~ 97 (600)
..+|.|+. ..++|+.+-.+|+.++ ....++++.+... +....+.+.|..|
T Consensus 26 ~~sv~I~~-----~D~~Y~~lm~Wls~q~--~~~~~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~G- 97 (187)
T PF08740_consen 26 TSSVEIPS-----DDEAYDWLMRWLSSQP--FSKRSRHLSATTRSNSSWDDDESDDEDSWDTNTSDDKKKPIRFTPSPG- 97 (187)
T ss_pred EEEEEECC-----CCHHHHHHHHHHhhCC--cccccceeEEEeecccccccccccccchhccccccCCcCCeEEEeCCC-
Confidence 35677764 4589999999999885 4444455555431 1456788899999
Q ss_pred eeeeccCCeeEEEEEeecCCCC--Cc----ccceEEEEeecccchHHHHHHhHHHHHHHHHHHHhcCceeEEeecCCcc-
Q 041382 98 EIVDVFQGVTMKWKFNSDINST--SH----FETRWYELKFHKMHTELVKKKYLVHVLEMAKMFKDRNRIVRFHTIRHDR- 170 (600)
Q Consensus 98 ~~~d~~~g~~~~w~~~~~~~~~--~~----~~~~~~~l~~~~~~~~~v~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~- 170 (600)
.....|+| +|..+.+.... .. .+...++|++..+.+ .+++.+|.++.+.. .+..+..+.||...+..
T Consensus 98 ~h~F~y~G---~~~~~~R~~~~~~~~~~~~~~~e~l~l~~lg~s~-~~l~~ll~ear~~~--~~~~~~~t~Iy~~~~~~~ 171 (187)
T PF08740_consen 98 THWFWYKG---RWFWFSRQRESNSYNSWTGAPDETLTLSCLGRSP-KPLKDLLEEAREYY--LKKQKGKTTIYRADGSEY 171 (187)
T ss_pred CEEEEECC---EEEEEEEEeccccccccCCCCceEEEEEEecCCH-HHHHHHHHHHHHHH--HHhcCCcEEEEeCCCCCC
Confidence 77779999 56665554321 11 236789999988876 46666666655544 23444556799887665
Q ss_pred -cccccccCCCCCCcccc
Q 041382 171 -WSSSGVNLDHPMTFGTL 187 (600)
Q Consensus 171 -w~~~~v~~~~p~~f~~l 187 (600)
|. .+.-.+++++++|
T Consensus 172 ~W~--~~~~r~~RplsTV 187 (187)
T PF08740_consen 172 RWR--RVASRPKRPLSTV 187 (187)
T ss_pred CCc--CCCCcCCCCCCCC
Confidence 99 7777788888875
No 302
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.32 E-value=0.0005 Score=75.97 Aligned_cols=163 Identities=18% Similarity=0.268 Sum_probs=97.5
Q ss_pred ccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCC--cceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCc----c--
Q 041382 184 FGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWK--RGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSV----V-- 255 (600)
Q Consensus 184 f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~--rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~----~-- 255 (600)
|-.|.|.+.+|.-|.-.+ +-+-..+..-|.+.+ -++++.|.||||||-+.+++++.+-+.+|.---.+ +
T Consensus 344 ~PsIyGhe~VK~GilL~L---fGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTa 420 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSL---FGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTA 420 (764)
T ss_pred CccccchHHHHhhHHHHH---hCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceE
Confidence 567788888888776433 222222222233332 26899999999999999999999988887642111 1
Q ss_pred ---CChhHHHHHHhhC----CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcC---------ccc
Q 041382 256 ---TSDSSLEYLLLHV----PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDG---------LLC 319 (600)
Q Consensus 256 ---~~~~~l~~~~~~~----~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg---------~~~ 319 (600)
.++......+... ....|-.|||+|.+-. + .+ ..++..|+. +..
T Consensus 421 aVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~---~--------------dq---vAihEAMEQQtISIaKAGv~a 480 (764)
T KOG0480|consen 421 AVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDV---K--------------DQ---VAIHEAMEQQTISIAKAGVVA 480 (764)
T ss_pred EEEecCCCCceeeecCcEEEccCceEEechhcccCh---H--------------hH---HHHHHHHHhheehheecceEE
Confidence 1111111222211 3578999999998731 0 01 234555532 111
Q ss_pred cCCCeeEEEEecCCcC-------------cCCHHHHhcCCcceE-EEeCCCCHHHHHHHHHHhcCc
Q 041382 320 CCGDEKITVFTTNYKD-------------RIDPALLRAGRMDRH-INLSYCTFSTFKQLAANYLDI 371 (600)
Q Consensus 320 ~~~~~~iiI~TTN~~~-------------~Ld~aLlrpgRfd~~-I~~~~p~~e~r~~il~~~l~~ 371 (600)
.-+..--|++++|... .+++++++ |||.. |-+..|++..=..|.+..+..
T Consensus 481 TLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~ 544 (764)
T KOG0480|consen 481 TLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDL 544 (764)
T ss_pred eecchhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHH
Confidence 1111124567776422 36899999 99965 566999998877777776654
No 303
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.31 E-value=0.0019 Score=65.48 Aligned_cols=27 Identities=30% Similarity=0.546 Sum_probs=23.8
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcCC
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMNY 245 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~~ 245 (600)
+.-+++.||+|+|||++++.+++.+..
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 346899999999999999999998754
No 304
>PF06431 Polyoma_lg_T_C: Polyomavirus large T antigen C-terminus; InterPro: IPR010932 The group of polyomaviruses is formed by the homonymous murine virus (Py) as well as other representative members such as the simian virus 40 (SV40) and the human BK and JC viruses []. Their large T antigen (T-ag) protein binds to and activates DNA replication from the origin of DNA replication (ori). Insofar as is known, the T-ag binds to the origin first as a monomer to its pentanucleotide recognition element. The monomers are then thought to assemble into hexamers and double hexamers, which constitute the form that is active in initiation of DNA replication. When bound to the ori, T-ag double hexamers encircle DNA []. T-ag is a multidomain protein that contains an N-terminal J domain, which mediates protein interactions (see PDOC00553 from PROSITEDOC, IPR001623 from INTERPRO), a central origin-binding domain (OBD), and a C-terminal superfamily 3 helicase domain (see PDOC51206 from PROSITEDOC, IPR010932 from INTERPRO) []. This entry represents the helicase domain of LTag, which assembles into a hexameric structure containing a positively charged central channel that can bind both single- and double-stranded DNA []. ATP binding and hydrolysis trigger large conformational changes which are thought to be coupled to the melting of origin DNA and the unwinding of duplex DNA []. These conformational changes cause the angles and orientations between regions of a monomer to alter, creating what was described as an "iris"-like motion in the hexamer. In addition to this, six beta hairpins on the channel surface move longitudinally along the central channel, possibly serving as a motor for pulling DNA into the LTag double hexamer for unwinding.; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 2H1L_H 1SVO_A 1SVM_E 1SVL_B 1N25_A 4E2I_K.
Probab=97.31 E-value=0.0014 Score=68.59 Aligned_cols=137 Identities=21% Similarity=0.284 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCChhHHHHHHhhCCCcce
Q 041382 194 KETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYLLLHVPNRSI 273 (600)
Q Consensus 194 k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~sI 273 (600)
.+.|.+.|..... .+|.+|.+||-||-.|||||+|+|+-+.+|.....+++. ...+..-+.-+-..-.
T Consensus 138 ~~~i~~iL~~lv~--------N~PKkRy~lFkGPvNsGKTTlAAAlLdL~gG~~LNvN~p----~dkl~FELG~AiDQfm 205 (417)
T PF06431_consen 138 DDVILEILKCLVE--------NIPKKRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCP----PDKLNFELGCAIDQFM 205 (417)
T ss_dssp HHHHHHHHHHHHH--------TBTTB-EEEEE-STTSSHHHHHHHHHHHH-EEEE-TSS-----TTTHHHHHCCCTT-SE
T ss_pred HHHHHHHHHHHhc--------CCCcceeEEEecCcCCchHHHHHHHHHhcCCceeecCCC----hhhcchhhheeeceEE
Confidence 3445555554444 357788999999999999999999999999888888875 3566666666667788
Q ss_pred eeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccC-----CCe-----eEEEEecCCcCcCCHHHHh
Q 041382 274 LVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCC-----GDE-----KITVFTTNYKDRIDPALLR 343 (600)
Q Consensus 274 L~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~-----~~~-----~iiI~TTN~~~~Ld~aLlr 343 (600)
+++||+--- .+....-..+..-..|..|-..+||...-. -.. ---|+|+|.. .||..+.-
T Consensus 206 VvFEDVKGq---------~~~~~~Lp~G~G~~NLDNLRD~LDG~V~VNLErKH~NK~sQiFPPgIvTmNeY-~iP~Tv~v 275 (417)
T PF06431_consen 206 VVFEDVKGQ---------PSDNKDLPPGQGMNNLDNLRDYLDGAVKVNLERKHQNKRSQIFPPGIVTMNEY-KIPQTVKV 275 (417)
T ss_dssp EEEEEE--S---------STTTTT----SHHHHHHTTHHHHH-SS-EEEECSSSEEEEE----EEEEESS--B--HHHHT
T ss_pred EEEEecCCC---------cCCCCCCCCCCCcccchhhhhhccCceeechhhhhcccccccCCCceEeeccc-cCCcceee
Confidence 899998311 111111122334455666777788753210 001 1246788864 57999998
Q ss_pred cCCcceEEEeC
Q 041382 344 AGRMDRHINLS 354 (600)
Q Consensus 344 pgRfd~~I~~~ 354 (600)
||-..+.|.
T Consensus 276 --Rf~~~~~F~ 284 (417)
T PF06431_consen 276 --RFCKVLDFR 284 (417)
T ss_dssp --TEEEEEE--
T ss_pred --eeEeeEecc
Confidence 998888876
No 305
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.31 E-value=0.00013 Score=69.74 Aligned_cols=59 Identities=25% Similarity=0.309 Sum_probs=37.3
Q ss_pred cccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCc---EEEEecCcc
Q 041382 187 LVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYD---IYNLNLSVV 255 (600)
Q Consensus 187 l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~---~~~l~~~~~ 255 (600)
++|.++..+++...+. ... ...++.++|+||||+|||++++++...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~-~~~---------~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AAQ---------SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GTS---------S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-HHH---------cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 4677777777776664 111 1234689999999999999999998877544 777777655
No 306
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.31 E-value=0.0016 Score=65.31 Aligned_cols=31 Identities=26% Similarity=0.552 Sum_probs=27.5
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
-++|.||||+||||+++.+|+.+|.+.+.++
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 4899999999999999999999998776554
No 307
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.31 E-value=0.00099 Score=66.61 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=31.3
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHc---------CCcEEEEecCc
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYM---------NYDIYNLNLSV 254 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l---------~~~~~~l~~~~ 254 (600)
|++.+.-+.|+||||||||+++..+|... +..++.++...
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 57777778999999999999999998543 25677777544
No 308
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.30 E-value=0.002 Score=69.15 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=22.8
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
+.-+++.||||+|||++++.+++.+.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhc
Confidence 34589999999999999999999864
No 309
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.29 E-value=0.0013 Score=61.32 Aligned_cols=24 Identities=29% Similarity=0.613 Sum_probs=21.8
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHc
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l 243 (600)
.-+.+.||||+||||++.-+|+.+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 368999999999999999999876
No 310
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.29 E-value=0.0011 Score=65.91 Aligned_cols=40 Identities=20% Similarity=0.190 Sum_probs=31.5
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHc---C------CcEEEEecCc
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYM---N------YDIYNLNLSV 254 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l---~------~~~~~l~~~~ 254 (600)
|++.+.-+.|+||||+|||+++..+|... + ..++.++...
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 67777788999999999999999998753 2 5666676544
No 311
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.27 E-value=0.0054 Score=61.22 Aligned_cols=124 Identities=10% Similarity=0.067 Sum_probs=92.2
Q ss_pred cceeeeCCCC-CCHHHHHHHHHHHcC---------CcEEEEecC-------ccCChhHHHHHHhhCC------Ccceeee
Q 041382 220 RGYLLYGPPG-TGKSSLIAAMANYMN---------YDIYNLNLS-------VVTSDSSLEYLLLHVP------NRSILVV 276 (600)
Q Consensus 220 rgiLL~GppG-tGKTsla~alA~~l~---------~~~~~l~~~-------~~~~~~~l~~~~~~~~------~~sIL~i 276 (600)
..|||.|..+ +||.-++..++..+. -+++.+... ...+...+|.+..... ..-|++|
T Consensus 16 hAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViII 95 (263)
T PRK06581 16 NSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAII 95 (263)
T ss_pred heeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEEE
Confidence 4899999998 999999998888662 245555432 1234456666554442 3459999
Q ss_pred cchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCC
Q 041382 277 EDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYC 356 (600)
Q Consensus 277 DeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p 356 (600)
+++|.+-. ...+.||..++.. +.+.++|.+|..++.|.|.+++ |+ ..+.++.|
T Consensus 96 ~~ae~mt~--------------------~AANALLKtLEEP----P~~t~fILit~~~~~LLpTIrS--RC-q~i~~~~p 148 (263)
T PRK06581 96 YSAELMNL--------------------NAANSCLKILEDA----PKNSYIFLITSRAASIISTIRS--RC-FKINVRSS 148 (263)
T ss_pred echHHhCH--------------------HHHHHHHHhhcCC----CCCeEEEEEeCChhhCchhHhh--ce-EEEeCCCC
Confidence 99998842 3567788888753 3568888999999999999999 98 68999999
Q ss_pred CHHHHHHHHHHhcC
Q 041382 357 TFSTFKQLAANYLD 370 (600)
Q Consensus 357 ~~e~r~~il~~~l~ 370 (600)
....-.++...++.
T Consensus 149 ~~~~~~e~~~~~~~ 162 (263)
T PRK06581 149 ILHAYNELYSQFIQ 162 (263)
T ss_pred CHHHHHHHHHHhcc
Confidence 99877777766554
No 312
>PRK13948 shikimate kinase; Provisional
Probab=97.27 E-value=0.00028 Score=68.19 Aligned_cols=35 Identities=20% Similarity=0.088 Sum_probs=31.9
Q ss_pred CCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 217 VWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 217 ~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
++++.++|.|++|+|||++++.+|+.++.++++.|
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 34578999999999999999999999999999777
No 313
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.27 E-value=0.0034 Score=66.87 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.6
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~ 244 (600)
-.++.||||||||++++.+|+.+.
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i~ 158 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAVA 158 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 469999999999999999999773
No 314
>PTZ00202 tuzin; Provisional
Probab=97.25 E-value=0.017 Score=62.57 Aligned_cols=64 Identities=19% Similarity=0.150 Sum_probs=49.4
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecC
Q 041382 180 HPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLS 253 (600)
Q Consensus 180 ~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~ 253 (600)
-|..-.+.+|.+.....+...+.. .....++-+.|.||+|||||++++.++..++...+.+|..
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~----------~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRR----------LDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhc----------cCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 345566789988888888766632 2222345678999999999999999999999888888877
No 315
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.25 E-value=0.00025 Score=68.06 Aligned_cols=28 Identities=21% Similarity=0.504 Sum_probs=24.7
Q ss_pred eeeeCCCCCCHHHHHHHHHHHcCCcEEE
Q 041382 222 YLLYGPPGTGKSSLIAAMANYMNYDIYN 249 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l~~~~~~ 249 (600)
+++.|||||||||+++.+|..++...+.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is 29 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLS 29 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 6899999999999999999999865544
No 316
>PRK06217 hypothetical protein; Validated
Probab=97.24 E-value=0.00027 Score=68.17 Aligned_cols=31 Identities=23% Similarity=0.383 Sum_probs=28.5
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
-|+|.|+||+||||+++++|..++.+++.+|
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999999987766
No 317
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.24 E-value=0.00039 Score=66.89 Aligned_cols=30 Identities=37% Similarity=0.699 Sum_probs=24.5
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEEEec
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNLNL 252 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~l~~ 252 (600)
-+++.||||+||||+|+.||+.++ +..++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~--i~hlst 31 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG--LPHLDT 31 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CcEEcH
Confidence 478999999999999999999954 444443
No 318
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.23 E-value=0.0017 Score=68.24 Aligned_cols=64 Identities=30% Similarity=0.327 Sum_probs=47.6
Q ss_pred Ccc-ccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc-CCcEEEEecC
Q 041382 183 TFG-TLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM-NYDIYNLNLS 253 (600)
Q Consensus 183 ~f~-~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l-~~~~~~l~~~ 253 (600)
.|+ ++.|.++..+++++.+..-.. .+-.-++-++|.||+|+|||++++.+.+.+ .+++|.+..+
T Consensus 58 ~f~~~~~G~~~~i~~lV~~fk~AA~-------g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~ 123 (358)
T PF08298_consen 58 FFEDEFYGMEETIERLVNYFKSAAQ-------GLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGC 123 (358)
T ss_pred CccccccCcHHHHHHHHHHHHHHHh-------ccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCC
Confidence 356 799999999988886643222 123345678999999999999999999987 4577777433
No 319
>PRK14532 adenylate kinase; Provisional
Probab=97.21 E-value=0.00029 Score=68.10 Aligned_cols=30 Identities=20% Similarity=0.422 Sum_probs=26.4
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNL 250 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~l 250 (600)
.++|.|||||||||+++.+|+.+|...++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 488999999999999999999998776544
No 320
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.19 E-value=0.00031 Score=64.47 Aligned_cols=30 Identities=23% Similarity=0.452 Sum_probs=28.1
Q ss_pred eeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 222 YLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
+.+.|+||||||++++.+|..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 678999999999999999999999998877
No 321
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.19 E-value=0.00031 Score=65.20 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=24.8
Q ss_pred eeeeCCCCCCHHHHHHHHHHHcCCcEEE
Q 041382 222 YLLYGPPGTGKSSLIAAMANYMNYDIYN 249 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l~~~~~~ 249 (600)
++|.||||+||||+++.++..++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998876654
No 322
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.19 E-value=0.0003 Score=64.50 Aligned_cols=45 Identities=27% Similarity=0.349 Sum_probs=34.6
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCChhHHHHHHh
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYLLL 266 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~~~~l~~~~~ 266 (600)
..+|+.|-||||||+++..+|..++++.+.+ +++..+.++..-+.
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~i--sd~vkEn~l~~gyD 52 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEI--SDLVKENNLYEGYD 52 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEeh--hhHHhhhcchhccc
Confidence 4899999999999999999999999887654 45554444444443
No 323
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.19 E-value=0.0017 Score=61.11 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=22.0
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHc
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l 243 (600)
+-.+++.||+|||||++.+++|+..
T Consensus 29 Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CceEEEeCCCCccHHHHHHHHHhcc
Confidence 3468999999999999999999954
No 324
>PRK14531 adenylate kinase; Provisional
Probab=97.18 E-value=0.00035 Score=67.44 Aligned_cols=31 Identities=26% Similarity=0.470 Sum_probs=27.2
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIYNL 250 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~~~~l 250 (600)
+-+++.||||+||||+++.+|..+|.+.+..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 3589999999999999999999998776553
No 325
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.17 E-value=0.00065 Score=77.50 Aligned_cols=52 Identities=25% Similarity=0.326 Sum_probs=42.6
Q ss_pred CCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 178 LDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 178 ~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
-.+|..|++++|+++.++.+...+.. ++.++|+||||||||++++++|..+.
T Consensus 24 ~~~~~~~~~vigq~~a~~~L~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 24 EVPERLIDQVIGQEHAVEVIKKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred ccCcccHHHcCChHHHHHHHHHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 34578899999999988877654431 24799999999999999999999875
No 326
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.16 E-value=0.00087 Score=64.04 Aligned_cols=64 Identities=17% Similarity=0.193 Sum_probs=47.1
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCChh-----------------------HHHHHHhh-CCCcceeee
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDS-----------------------SLEYLLLH-VPNRSILVV 276 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~~~-----------------------~l~~~~~~-~~~~sIL~i 276 (600)
-+|+.||||||||++|..+|..++.+++.+......+.. ++..++.. ..++.+++|
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~~~~VlI 82 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAPGRCVLV 82 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCCCCEEEe
Confidence 479999999999999999999998888877765544331 23344444 345668999
Q ss_pred cchhhhhh
Q 041382 277 EDIDCSIK 284 (600)
Q Consensus 277 DeiD~l~~ 284 (600)
|-+-.+..
T Consensus 83 D~Lt~~~~ 90 (170)
T PRK05800 83 DCLTTWVT 90 (170)
T ss_pred hhHHHHHH
Confidence 99888753
No 327
>PRK08233 hypothetical protein; Provisional
Probab=97.16 E-value=0.0027 Score=60.61 Aligned_cols=32 Identities=13% Similarity=0.198 Sum_probs=25.5
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcC-CcEEEEec
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMN-YDIYNLNL 252 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~-~~~~~l~~ 252 (600)
-+.+.|+||+||||+++.+|..++ ..++..+.
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 467889999999999999999985 44544443
No 328
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.16 E-value=0.0018 Score=64.26 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=20.2
Q ss_pred cceeeeCCCCCCHHHHHHHHHH
Q 041382 220 RGYLLYGPPGTGKSSLIAAMAN 241 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~ 241 (600)
+.++|.||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6799999999999999999983
No 329
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.16 E-value=0.0024 Score=68.62 Aligned_cols=69 Identities=22% Similarity=0.326 Sum_probs=47.0
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccC--------------------ChhHHHHHHhh--CC
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVT--------------------SDSSLEYLLLH--VP 269 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~--------------------~~~~l~~~~~~--~~ 269 (600)
|++++.-++|+||||+|||+++..+|..+ +.++++++...-. ....+..++.. ..
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 57777778999999999999999998765 3467666543211 11122222222 24
Q ss_pred Ccceeeecchhhhh
Q 041382 270 NRSILVVEDIDCSI 283 (600)
Q Consensus 270 ~~sIL~iDeiD~l~ 283 (600)
+|.+|+||.|..+.
T Consensus 158 ~~~lVVIDSIq~l~ 171 (372)
T cd01121 158 KPDLVIIDSIQTVY 171 (372)
T ss_pred CCcEEEEcchHHhh
Confidence 78999999999875
No 330
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.16 E-value=0.0023 Score=70.44 Aligned_cols=70 Identities=23% Similarity=0.356 Sum_probs=48.4
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccC--------------------ChhHHHHHHhhC--C
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVT--------------------SDSSLEYLLLHV--P 269 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~--------------------~~~~l~~~~~~~--~ 269 (600)
|+++..-+||+||||+|||+++..+|... +.++++++...-. ....+..++... .
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 67777788999999999999999998865 5677777654321 111222222222 3
Q ss_pred Ccceeeecchhhhhh
Q 041382 270 NRSILVVEDIDCSIK 284 (600)
Q Consensus 270 ~~sIL~iDeiD~l~~ 284 (600)
.|.+++||.|..+..
T Consensus 156 ~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 156 KPDLVVIDSIQTMYS 170 (446)
T ss_pred CCCEEEEechhhhcc
Confidence 688999999988753
No 331
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.15 E-value=0.00035 Score=65.81 Aligned_cols=28 Identities=29% Similarity=0.598 Sum_probs=24.4
Q ss_pred eeeeCCCCCCHHHHHHHHHHHcCCcEEE
Q 041382 222 YLLYGPPGTGKSSLIAAMANYMNYDIYN 249 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l~~~~~~ 249 (600)
++|.|||||||||+++.+++.++..++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 5789999999999999999999866543
No 332
>PRK09354 recA recombinase A; Provisional
Probab=97.14 E-value=0.0017 Score=68.63 Aligned_cols=70 Identities=16% Similarity=0.190 Sum_probs=45.8
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHH---cCCcEEEEecCccCC---------------------hhHH---HHHHhh
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANY---MNYDIYNLNLSVVTS---------------------DSSL---EYLLLH 267 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~---l~~~~~~l~~~~~~~---------------------~~~l---~~~~~~ 267 (600)
|+|..+-+++|||||||||+|+-.++.. .|...+.++...-.+ .... ...+..
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 5777778899999999999999876643 366666666543211 1111 111222
Q ss_pred CCCcceeeecchhhhhh
Q 041382 268 VPNRSILVVEDIDCSIK 284 (600)
Q Consensus 268 ~~~~sIL~iDeiD~l~~ 284 (600)
...+.+||||-+-++.+
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 24678999999998863
No 333
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.13 E-value=0.00039 Score=67.23 Aligned_cols=29 Identities=31% Similarity=0.529 Sum_probs=25.9
Q ss_pred eeeeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 041382 222 YLLYGPPGTGKSSLIAAMANYMNYDIYNL 250 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l~~~~~~l 250 (600)
+++.||||+|||++++.+|..+|...+.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 78999999999999999999998776554
No 334
>PRK13946 shikimate kinase; Provisional
Probab=97.11 E-value=0.00041 Score=67.04 Aligned_cols=33 Identities=27% Similarity=0.418 Sum_probs=30.6
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
++.++|.|+||||||++++.+|+.+|+++++.|
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 457999999999999999999999999998877
No 335
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.10 E-value=0.00048 Score=65.87 Aligned_cols=33 Identities=33% Similarity=0.628 Sum_probs=30.2
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCcEEEEec
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNL 252 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~ 252 (600)
..++|.||+|+|||++++.+|+.++++++..|.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 469999999999999999999999999987774
No 336
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.09 E-value=0.0021 Score=66.55 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=28.5
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHc----C-CcEEEEecCc
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYM----N-YDIYNLNLSV 254 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l----~-~~~~~l~~~~ 254 (600)
++.++|.||+|+||||++..+|.++ + ..+..+++..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 4468899999999999999999876 3 5666666554
No 337
>PLN02674 adenylate kinase
Probab=97.07 E-value=0.00073 Score=68.18 Aligned_cols=30 Identities=23% Similarity=0.439 Sum_probs=25.9
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCcEEE
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIYN 249 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~~~~ 249 (600)
..++|.||||+||||+++.||..++...+.
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~~~his 61 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYCLCHLA 61 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEEc
Confidence 468999999999999999999999865543
No 338
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.06 E-value=0.0012 Score=67.68 Aligned_cols=90 Identities=22% Similarity=0.387 Sum_probs=57.1
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC---cEEEEec-Ccc
Q 041382 180 HPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY---DIYNLNL-SVV 255 (600)
Q Consensus 180 ~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~---~~~~l~~-~~~ 255 (600)
.+.+++++...+...+.+.+.+..... .++.+++.||+|+||||+++++..++.. .++.+.- ..+
T Consensus 99 ~~~sle~l~~~~~~~~~~~~~l~~~v~-----------~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEEIAEFLRSAVR-----------GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp S--CHCCCCHTHHCHHHHHHHHHHCHH-----------TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred ccccHhhccCchhhHHHHHHHHhhccc-----------cceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 445888888877766666666644332 2458999999999999999999998843 3444431 111
Q ss_pred -------------CChhHHHHHHhhC--CCcceeeecchh
Q 041382 256 -------------TSDSSLEYLLLHV--PNRSILVVEDID 280 (600)
Q Consensus 256 -------------~~~~~l~~~~~~~--~~~sIL~iDeiD 280 (600)
.....+..++..+ ..|.+|++.||.
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 1223455555544 469999999994
No 339
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.06 E-value=0.00049 Score=64.13 Aligned_cols=28 Identities=21% Similarity=0.504 Sum_probs=25.9
Q ss_pred eeeeCCCCCCHHHHHHHHHHHcCCcEEE
Q 041382 222 YLLYGPPGTGKSSLIAAMANYMNYDIYN 249 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l~~~~~~ 249 (600)
+-+.|||||||||+++-+|.++|+++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5678999999999999999999999875
No 340
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.06 E-value=0.0028 Score=61.45 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=23.4
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
.++-++|.||||+|||+|++.+.....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~ 29 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHP 29 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCC
Confidence 456789999999999999999988763
No 341
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.05 E-value=0.0011 Score=69.53 Aligned_cols=57 Identities=23% Similarity=0.212 Sum_probs=41.0
Q ss_pred ChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 190 DGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 190 ~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
.++.++.+.+.+...+.. .....++..+.|.|+||||||++++.+|..+|.++++++
T Consensus 109 ~~~~~~~~~~~l~~~~~~-----~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 109 SPAQLARVRDALSGMLGA-----GRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred CHHHHHHHHHHHHHHHhh-----hhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 344555555555443331 112455668999999999999999999999999999655
No 342
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.04 E-value=0.0006 Score=64.77 Aligned_cols=31 Identities=26% Similarity=0.480 Sum_probs=28.9
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
.++|.|+||||||++++.+|..+|.++++.|
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 5889999999999999999999999998776
No 343
>PRK14530 adenylate kinase; Provisional
Probab=97.03 E-value=0.00058 Score=67.63 Aligned_cols=30 Identities=27% Similarity=0.446 Sum_probs=27.0
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNL 250 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~l 250 (600)
.++|.||||+||||+++.+|..++.+++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 589999999999999999999999877644
No 344
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.02 E-value=0.0005 Score=65.77 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=27.5
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
+-++|.||||+||||++++++..++.+++.++
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~ 34 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFG 34 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccC
Confidence 46899999999999999999999887766443
No 345
>PRK06762 hypothetical protein; Provisional
Probab=97.00 E-value=0.00075 Score=63.76 Aligned_cols=32 Identities=13% Similarity=0.306 Sum_probs=27.3
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
.-++|.|+||+||||+|+.++..++..++.++
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~ 34 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVS 34 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEec
Confidence 46889999999999999999999966666565
No 346
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.00 E-value=0.018 Score=57.92 Aligned_cols=124 Identities=16% Similarity=0.265 Sum_probs=75.4
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcCC---cEEEEecCccC----------------ChhHH-----------HHHHhhC
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMNY---DIYNLNLSVVT----------------SDSSL-----------EYLLLHV 268 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~~---~~~~l~~~~~~----------------~~~~l-----------~~~~~~~ 268 (600)
+-.+.+.||+|||||+++..+-..+.. +++.+. .... ....+ .+.....
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t-~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~ 91 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT-PEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKS 91 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe-cCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhh
Confidence 346899999999999999999887643 222221 1110 11111 1111111
Q ss_pred -----CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHh
Q 041382 269 -----PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLR 343 (600)
Q Consensus 269 -----~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlr 343 (600)
..+++|++||+-.- ......+..+++. |- --++-+|+++...-.|||.++.
T Consensus 92 ~~~k~~~~~LiIlDD~~~~------------------~~k~~~l~~~~~~--gR----H~~is~i~l~Q~~~~lp~~iR~ 147 (241)
T PF04665_consen 92 PQKKNNPRFLIILDDLGDK------------------KLKSKILRQFFNN--GR----HYNISIIFLSQSYFHLPPNIRS 147 (241)
T ss_pred cccCCCCCeEEEEeCCCCc------------------hhhhHHHHHHHhc--cc----ccceEEEEEeeecccCCHHHhh
Confidence 23689999997320 0112345566642 11 1247788889888999999877
Q ss_pred cCCcceEEEeCCCCHHHHHHHHHHhcC
Q 041382 344 AGRMDRHINLSYCTFSTFKQLAANYLD 370 (600)
Q Consensus 344 pgRfd~~I~~~~p~~e~r~~il~~~l~ 370 (600)
=++..+-++ -+......|++++..
T Consensus 148 --n~~y~i~~~-~s~~dl~~i~~~~~~ 171 (241)
T PF04665_consen 148 --NIDYFIIFN-NSKRDLENIYRNMNI 171 (241)
T ss_pred --cceEEEEec-CcHHHHHHHHHhccc
Confidence 788877776 467777777776543
No 347
>PF13245 AAA_19: Part of AAA domain
Probab=96.99 E-value=0.001 Score=54.71 Aligned_cols=32 Identities=34% Similarity=0.627 Sum_probs=21.7
Q ss_pred ceeeeCCCCCCHH-HHHHHHHHHc------CCcEEEEec
Q 041382 221 GYLLYGPPGTGKS-SLIAAMANYM------NYDIYNLNL 252 (600)
Q Consensus 221 giLL~GppGtGKT-sla~alA~~l------~~~~~~l~~ 252 (600)
-+++.|||||||| ++++.++..+ +..+..+..
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~ 50 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP 50 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 3556999999999 5666666655 445555544
No 348
>PRK06547 hypothetical protein; Provisional
Probab=96.98 E-value=0.00081 Score=64.38 Aligned_cols=34 Identities=26% Similarity=0.443 Sum_probs=29.2
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
.+.-+++.||+|||||++++.+|+.++.+++.++
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 3457889999999999999999999988877654
No 349
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.97 E-value=0.00077 Score=71.91 Aligned_cols=45 Identities=29% Similarity=0.558 Sum_probs=39.0
Q ss_pred CCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 182 MTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 182 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
.++++....+.+++++.+-. +|+|+.||||.||||+|+|+|.++.
T Consensus 244 ~~ledY~L~dkl~eRL~era------------------eGILIAG~PGaGKsTFaqAlAefy~ 288 (604)
T COG1855 244 LSLEDYGLSDKLKERLEERA------------------EGILIAGAPGAGKSTFAQALAEFYA 288 (604)
T ss_pred echhhcCCCHHHHHHHHhhh------------------cceEEecCCCCChhHHHHHHHHHHH
Confidence 37888888899988887643 4999999999999999999999874
No 350
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=96.97 E-value=0.0069 Score=63.16 Aligned_cols=128 Identities=21% Similarity=0.251 Sum_probs=86.6
Q ss_pred cccCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEe
Q 041382 175 GVNLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLN 251 (600)
Q Consensus 175 ~v~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~ 251 (600)
.+...+...|+.+++.....+.+++....+.. + .-.+|+.|..||||-.+|+|--... ..+|+.++
T Consensus 194 ~~~~~~~~~F~~~v~~S~~mk~~v~qA~k~Am-------l----DAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalN 262 (511)
T COG3283 194 NVAAQDVSGFEQIVAVSPKMKHVVEQAQKLAM-------L----DAPLLITGETGTGKDLLAKACHLASPRHSKPFLALN 262 (511)
T ss_pred hcccccccchHHHhhccHHHHHHHHHHHHhhc-------c----CCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEee
Confidence 45566777899999988777777665544332 1 1258999999999999998743322 67999999
Q ss_pred cCccCChhHHHHHHhhCC------------CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhh-cCcc
Q 041382 252 LSVVTSDSSLEYLLLHVP------------NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAI-DGLL 318 (600)
Q Consensus 252 ~~~~~~~~~l~~~~~~~~------------~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~l-dg~~ 318 (600)
|..+-.+..=.++|..++ +..-+|+|+|..+.+ ..-..||.++ ||..
T Consensus 263 CA~lPe~~aEsElFG~apg~~gk~GffE~AngGTVlLDeIgEmSp--------------------~lQaKLLRFL~DGtF 322 (511)
T COG3283 263 CASLPEDAAESELFGHAPGDEGKKGFFEQANGGTVLLDEIGEMSP--------------------RLQAKLLRFLNDGTF 322 (511)
T ss_pred cCCCchhHhHHHHhcCCCCCCCccchhhhccCCeEEeehhhhcCH--------------------HHHHHHHHHhcCCce
Confidence 999976555555555443 456788999965532 3445567666 5544
Q ss_pred ccCCC------eeEEEEecCC
Q 041382 319 CCCGD------EKITVFTTNY 333 (600)
Q Consensus 319 ~~~~~------~~iiI~TTN~ 333 (600)
..-|+ ++-||+||..
T Consensus 323 RRVGee~Ev~vdVRVIcatq~ 343 (511)
T COG3283 323 RRVGEDHEVHVDVRVICATQV 343 (511)
T ss_pred eecCCcceEEEEEEEEecccc
Confidence 33332 3778899875
No 351
>PRK14528 adenylate kinase; Provisional
Probab=96.95 E-value=0.00074 Score=65.41 Aligned_cols=30 Identities=20% Similarity=0.480 Sum_probs=26.8
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNL 250 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~l 250 (600)
.+++.||||+|||++++.+|..+|.+.+..
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 489999999999999999999999877654
No 352
>PRK14529 adenylate kinase; Provisional
Probab=96.94 E-value=0.0015 Score=65.11 Aligned_cols=28 Identities=25% Similarity=0.465 Sum_probs=25.4
Q ss_pred eeeeCCCCCCHHHHHHHHHHHcCCcEEE
Q 041382 222 YLLYGPPGTGKSSLIAAMANYMNYDIYN 249 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l~~~~~~ 249 (600)
++|.||||+||||+++.||..++.+.++
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is 30 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIE 30 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcc
Confidence 7899999999999999999999977653
No 353
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.93 E-value=0.0008 Score=64.59 Aligned_cols=29 Identities=17% Similarity=0.383 Sum_probs=25.4
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEE
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYN 249 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~ 249 (600)
-+++.||||+||||+++.+|..+|...+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 57899999999999999999999866543
No 354
>PRK02496 adk adenylate kinase; Provisional
Probab=96.92 E-value=0.00074 Score=65.01 Aligned_cols=29 Identities=24% Similarity=0.535 Sum_probs=26.1
Q ss_pred eeeeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 041382 222 YLLYGPPGTGKSSLIAAMANYMNYDIYNL 250 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l~~~~~~l 250 (600)
+++.||||+|||++++.+|..++.+.+..
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 78999999999999999999998776654
No 355
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.91 E-value=0.0016 Score=60.96 Aligned_cols=27 Identities=37% Similarity=0.546 Sum_probs=23.4
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
+..-+.|.||.|+|||++++++++.+.
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345688999999999999999999764
No 356
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.90 E-value=0.0083 Score=62.94 Aligned_cols=30 Identities=30% Similarity=0.278 Sum_probs=25.7
Q ss_pred CCCcceeeeCCCCCCHHHHHHHHHHHcCCc
Q 041382 217 VWKRGYLLYGPPGTGKSSLIAAMANYMNYD 246 (600)
Q Consensus 217 ~~~rgiLL~GppGtGKTsla~alA~~l~~~ 246 (600)
..+..+-|+||=|+|||++++.+-+++...
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 456688999999999999999998887544
No 357
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.90 E-value=0.0054 Score=61.36 Aligned_cols=23 Identities=35% Similarity=0.548 Sum_probs=20.8
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHc
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l 243 (600)
-+-+.||+|||||||.+.+|+..
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999999965
No 358
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.90 E-value=0.0021 Score=65.11 Aligned_cols=65 Identities=25% Similarity=0.381 Sum_probs=53.2
Q ss_pred CcceeeeCCCCCCHHHHHHHHHH------HcCCcEEEEecCccCChhHHHHHHhhC-----------------CCcceee
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMAN------YMNYDIYNLNLSVVTSDSSLEYLLLHV-----------------PNRSILV 275 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~------~l~~~~~~l~~~~~~~~~~l~~~~~~~-----------------~~~sIL~ 275 (600)
+..+||.||.|.|||.|++-|-. .+..+++.++|..+.++..+..+|... ....+||
T Consensus 208 r~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlf 287 (531)
T COG4650 208 RAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLF 287 (531)
T ss_pred cCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEe
Confidence 34699999999999999998754 567899999999999888777776543 2357999
Q ss_pred ecchhhhh
Q 041382 276 VEDIDCSI 283 (600)
Q Consensus 276 iDeiD~l~ 283 (600)
+|||..+.
T Consensus 288 ldeigelg 295 (531)
T COG4650 288 LDEIGELG 295 (531)
T ss_pred hHhhhhcC
Confidence 99998774
No 359
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.88 E-value=0.0026 Score=61.64 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=22.4
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCC
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNY 245 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~ 245 (600)
=++|.|+||+|||++++-+|+.|..
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHH
Confidence 3789999999999999999998843
No 360
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.87 E-value=0.035 Score=66.56 Aligned_cols=148 Identities=16% Similarity=0.126 Sum_probs=79.8
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCCh------------------------------------hHHHH
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSD------------------------------------SSLEY 263 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~~------------------------------------~~l~~ 263 (600)
+-++++||+|.|||+++...+...+ ++.-+++..-.++ ..+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 4689999999999999999887766 5554444211100 00111
Q ss_pred HHh---hCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCH-
Q 041382 264 LLL---HVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDP- 339 (600)
Q Consensus 264 ~~~---~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~- 339 (600)
++. ....|.+|||||++.+-+ ......+..|+.. . +.++.+|+|+.....++-
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~~----------------~~~~~~l~~l~~~---~----~~~~~lv~~sR~~~~~~~~ 168 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLITN----------------PEIHEAMRFFLRH---Q----PENLTLVVLSRNLPPLGIA 168 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCCC----------------hHHHHHHHHHHHh---C----CCCeEEEEEeCCCCCCchH
Confidence 222 225689999999997621 1111233333332 2 233555556654222321
Q ss_pred HHHhcCCcceEEEeC----CCCHHHHHHHHHHhcCcCCCccHHHHHHHhhhcCCCHHHHHH
Q 041382 340 ALLRAGRMDRHINLS----YCTFSTFKQLAANYLDINDHDLYCHIEKLMEKVKVSPAEVAG 396 (600)
Q Consensus 340 aLlrpgRfd~~I~~~----~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~~~~~t~a~i~~ 396 (600)
.+... +..+++. ..+.++-.+++...++.. .....+..+.+.++=-|.-+..
T Consensus 169 ~l~~~---~~~~~l~~~~l~f~~~e~~~ll~~~~~~~--~~~~~~~~l~~~t~Gwp~~l~l 224 (903)
T PRK04841 169 NLRVR---DQLLEIGSQQLAFDHQEAQQFFDQRLSSP--IEAAESSRLCDDVEGWATALQL 224 (903)
T ss_pred hHHhc---CcceecCHHhCCCCHHHHHHHHHhccCCC--CCHHHHHHHHHHhCChHHHHHH
Confidence 22211 2234444 668888888887666542 2334455555555555555543
No 361
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.86 E-value=0.0036 Score=64.26 Aligned_cols=25 Identities=28% Similarity=0.583 Sum_probs=23.0
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
.++++.||||+||||+.+++++.+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 4899999999999999999999874
No 362
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.85 E-value=0.00093 Score=65.93 Aligned_cols=29 Identities=28% Similarity=0.505 Sum_probs=25.9
Q ss_pred eeeeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 041382 222 YLLYGPPGTGKSSLIAAMANYMNYDIYNL 250 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l~~~~~~l 250 (600)
+++.||||+||||+++.+|..+|+..+..
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 78999999999999999999998777653
No 363
>PLN02200 adenylate kinase family protein
Probab=96.85 E-value=0.0011 Score=66.63 Aligned_cols=34 Identities=18% Similarity=0.306 Sum_probs=27.6
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCc
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSV 254 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~ 254 (600)
+.-+++.|||||||||+++.+|..+|... +++++
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~h--is~gd 76 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFKH--LSAGD 76 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCeE--EEccH
Confidence 34688999999999999999999998654 44443
No 364
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.85 E-value=0.015 Score=63.62 Aligned_cols=36 Identities=25% Similarity=0.373 Sum_probs=27.7
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHc-----CCcEEEEecCc
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYM-----NYDIYNLNLSV 254 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l-----~~~~~~l~~~~ 254 (600)
++.++|.||+|+||||++..+|..+ +..+..+++..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 4568899999999999999998754 34566666544
No 365
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.84 E-value=0.0016 Score=52.33 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=24.0
Q ss_pred eeeeCCCCCCHHHHHHHHHHHc-CCcEEEEe
Q 041382 222 YLLYGPPGTGKSSLIAAMANYM-NYDIYNLN 251 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l-~~~~~~l~ 251 (600)
+.+.|+||+|||+++++++..+ +.++..++
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~ 32 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLD 32 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEe
Confidence 5688999999999999999997 34444444
No 366
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.84 E-value=0.00076 Score=63.64 Aligned_cols=30 Identities=27% Similarity=0.551 Sum_probs=27.0
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
-+++.|.|||||||+++.++ .+|++++.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 37899999999999999999 9999888765
No 367
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.84 E-value=0.0036 Score=61.35 Aligned_cols=62 Identities=16% Similarity=0.296 Sum_probs=40.9
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHH-----cCCcEE-------------EEecC-ccC--------ChhHHHHHHhhCC--
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANY-----MNYDIY-------------NLNLS-VVT--------SDSSLEYLLLHVP-- 269 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~-----l~~~~~-------------~l~~~-~~~--------~~~~l~~~~~~~~-- 269 (600)
++.++|.||.|+||||+++.++.. .|.++- .+... .+. .-..+..++....
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~ 104 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKG 104 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCC
Confidence 357899999999999999999863 344321 01000 000 0134566777777
Q ss_pred Ccceeeecchh
Q 041382 270 NRSILVVEDID 280 (600)
Q Consensus 270 ~~sIL~iDeiD 280 (600)
.|.++++||.-
T Consensus 105 ~p~llllDEp~ 115 (199)
T cd03283 105 EPVLFLLDEIF 115 (199)
T ss_pred CCeEEEEeccc
Confidence 89999999974
No 368
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.83 E-value=0.001 Score=65.93 Aligned_cols=29 Identities=28% Similarity=0.479 Sum_probs=26.1
Q ss_pred eeeeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 041382 222 YLLYGPPGTGKSSLIAAMANYMNYDIYNL 250 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l~~~~~~l 250 (600)
++++||||+|||++++.+|..++...+.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 78999999999999999999999776653
No 369
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=96.81 E-value=0.0014 Score=69.36 Aligned_cols=115 Identities=21% Similarity=0.284 Sum_probs=67.0
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCChhHHHHHHhhCCCcceeeecchhhhhhhhccccCCCC
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGD 294 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~ 294 (600)
|+|.+..+++||||+||||+++-++-+.++..++..- ++.-+..+.-...--|-+|||+-.-.=
T Consensus 258 g~PKKnClvi~GPPdTGKS~F~~SLi~Fl~GkViSf~------Ns~ShFWLqPL~d~Ki~llDDAT~~cW---------- 321 (432)
T PF00519_consen 258 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFV------NSKSHFWLQPLADAKIALLDDATYPCW---------- 321 (432)
T ss_dssp TBTTSSEEEEESSCCCSHHHHHHHHHHHHTSEEE-GG------GTTSCGGGGGGCT-SSEEEEEE-HHHH----------
T ss_pred CCCcccEEEEECCCCCchhHHHHHHHHHhCCEEEEec------CCCCcccccchhcCcEEEEcCCcccHH----------
Confidence 7888889999999999999999999999998887631 122233455555567889999843210
Q ss_pred CCCCCCCChHHHHHHHHHhhcCcccc----CCCe-----eEEEEecCCcCcCC---HHHHhcCCcceEEEeCCCC
Q 041382 295 EPADSYRGPQVTLAGLLNAIDGLLCC----CGDE-----KITVFTTNYKDRID---PALLRAGRMDRHINLSYCT 357 (600)
Q Consensus 295 ~~~~~~~~~~~~ls~lL~~ldg~~~~----~~~~-----~iiI~TTN~~~~Ld---~aLlrpgRfd~~I~~~~p~ 357 (600)
.-.=..|-|.+||-.-+ .... .-++.|||.-=.-+ .-|.+ |+ ..++||.|-
T Consensus 322 ---------~Y~D~ylRNaLDGN~vsiD~KHkap~Qik~PPLlITsN~dv~~~~~~~YLhS--Ri-~~f~F~n~~ 384 (432)
T PF00519_consen 322 ---------DYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKKDDRWKYLHS--RI-TCFEFPNPF 384 (432)
T ss_dssp ---------HHHHHHTHHHHCTSEEEEEESSSEEEEEE---EEEEESS-TTTSCCCHHHCT--TE-EEEE--S-S
T ss_pred ---------HHHHHHHHhccCCCeeeeeccCCCceEeecCceEEecCCCCCcchhhhhhhh--eE-EEEEcCCcc
Confidence 00112355778874210 0001 23568888422223 34556 87 678876553
No 370
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.80 E-value=0.0043 Score=59.20 Aligned_cols=63 Identities=14% Similarity=0.199 Sum_probs=45.5
Q ss_pred eeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCCh-----------------------hHHHHHHhhCCCcceeeecc
Q 041382 222 YLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSD-----------------------SSLEYLLLHVPNRSILVVED 278 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~~-----------------------~~l~~~~~~~~~~sIL~iDe 278 (600)
+|+.||||+|||++|..+|...+.+.+++....-.+. .++...+...+.+.+++||-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~VLIDc 81 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDVVLIDC 81 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCEEEEEc
Confidence 6899999999999999999888878887765543321 23334443334566899999
Q ss_pred hhhhhh
Q 041382 279 IDCSIK 284 (600)
Q Consensus 279 iD~l~~ 284 (600)
+.....
T Consensus 82 lt~~~~ 87 (169)
T cd00544 82 LTLWVT 87 (169)
T ss_pred HhHHHH
Confidence 887764
No 371
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.79 E-value=0.011 Score=62.35 Aligned_cols=151 Identities=15% Similarity=0.192 Sum_probs=85.6
Q ss_pred ccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCCh-------
Q 041382 186 TLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSD------- 258 (600)
Q Consensus 186 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~~------- 258 (600)
.+.+.+.+...+...+- .+ .-..|..+.|||-.|||||.+++.+-+.++.+.+.++|-+..+-
T Consensus 7 ~v~~Re~qi~~L~~Llg---~~-------~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLG---NN-------SCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred CccchHHHHHHHHHHhC---CC-------CcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHH
Confidence 34566666666554431 11 11345577999999999999999999999988888776443210
Q ss_pred ---------------------hHHHHHHhhC---C---CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHH
Q 041382 259 ---------------------SSLEYLLLHV---P---NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLL 311 (600)
Q Consensus 259 ---------------------~~l~~~~~~~---~---~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL 311 (600)
..+...|... . ....|++|.+|.+-+ .....+..|+
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD-----------------~~a~ll~~l~ 139 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRD-----------------MDAILLQCLF 139 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhc-----------------cchHHHHHHH
Confidence 1122333331 1 246889999999842 1113444444
Q ss_pred HhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcc-eEEEeCCCCHHHHHHHHHHh
Q 041382 312 NAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMD-RHINLSYCTFSTFKQLAANY 368 (600)
Q Consensus 312 ~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd-~~I~~~~p~~e~r~~il~~~ 368 (600)
..-.-+ . .+.+.|...-.+. .+.-+.+-|-++ ..++||.++.++..+|+..-
T Consensus 140 ~L~el~-~---~~~i~iils~~~~-e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 140 RLYELL-N---EPTIVIILSAPSC-EKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred HHHHHh-C---CCceEEEEecccc-HHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 322211 1 1123333222110 011222334443 47899999999999888743
No 372
>PF13479 AAA_24: AAA domain
Probab=96.78 E-value=0.002 Score=63.74 Aligned_cols=60 Identities=25% Similarity=0.448 Sum_probs=37.0
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEE-EEecCc-------------cCChhHHHHHHhhC----CCcceeeecchhhh
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIY-NLNLSV-------------VTSDSSLEYLLLHV----PNRSILVVEDIDCS 282 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~-~l~~~~-------------~~~~~~l~~~~~~~----~~~sIL~iDeiD~l 282 (600)
.++||||||+|||+++..+ +.+++ .++.+. +.+-..+...+... ..--.|+||-++.+
T Consensus 5 ~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~~ 80 (213)
T PF13479_consen 5 KILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISWL 80 (213)
T ss_pred EEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHHH
Confidence 5899999999999998887 32222 222221 01234455544332 23469999998886
Q ss_pred hh
Q 041382 283 IK 284 (600)
Q Consensus 283 ~~ 284 (600)
..
T Consensus 81 ~~ 82 (213)
T PF13479_consen 81 ED 82 (213)
T ss_pred HH
Confidence 43
No 373
>PRK14527 adenylate kinase; Provisional
Probab=96.77 E-value=0.001 Score=64.55 Aligned_cols=31 Identities=23% Similarity=0.509 Sum_probs=26.6
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcCCcEEE
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMNYDIYN 249 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~~~~~~ 249 (600)
+.-++++||||+||||+++.+|..++...+.
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 3468999999999999999999999866543
No 374
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.75 E-value=0.0032 Score=58.28 Aligned_cols=65 Identities=18% Similarity=0.251 Sum_probs=40.3
Q ss_pred CCCcceeeeCCCCCCHHHHHHHHHHHcCC-----------cEEEEecCccCChhHHHHHHh--hCCCcceeeecchhhhh
Q 041382 217 VWKRGYLLYGPPGTGKSSLIAAMANYMNY-----------DIYNLNLSVVTSDSSLEYLLL--HVPNRSILVVEDIDCSI 283 (600)
Q Consensus 217 ~~~rgiLL~GppGtGKTsla~alA~~l~~-----------~~~~l~~~~~~~~~~l~~~~~--~~~~~sIL~iDeiD~l~ 283 (600)
.++..+.|.||+|+|||||++++++.+.. .+..+. .+.....-+-.+. -..+|.++++||-..-+
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~--~lS~G~~~rv~laral~~~p~illlDEP~~~L 101 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFE--QLSGGEKMRLALAKLLLENPNLLLLDEPTNHL 101 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEc--cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 34456889999999999999999997631 111111 1222222222222 23589999999986543
No 375
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.72 E-value=0.00096 Score=59.50 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=20.9
Q ss_pred eeeeCCCCCCHHHHHHHHHHHc
Q 041382 222 YLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l 243 (600)
|+|.|+|||||||+++.++..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999998
No 376
>PRK04040 adenylate kinase; Provisional
Probab=96.71 E-value=0.0014 Score=63.58 Aligned_cols=29 Identities=24% Similarity=0.562 Sum_probs=25.0
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHc--CCcEE
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYM--NYDIY 248 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l--~~~~~ 248 (600)
.-++++|+|||||||+++.++..+ +..++
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 468999999999999999999999 55553
No 377
>PRK04182 cytidylate kinase; Provisional
Probab=96.70 E-value=0.0015 Score=62.18 Aligned_cols=29 Identities=24% Similarity=0.479 Sum_probs=26.6
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEE
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYN 249 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~ 249 (600)
-+.|.|+||||||++++.+|..+|++++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 37899999999999999999999998875
No 378
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.67 E-value=0.003 Score=56.10 Aligned_cols=23 Identities=26% Similarity=0.288 Sum_probs=20.5
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHc
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l 243 (600)
+++++||+|+|||+++.+.+..+
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 68999999999999988887765
No 379
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.67 E-value=0.0057 Score=62.70 Aligned_cols=86 Identities=17% Similarity=0.252 Sum_probs=53.2
Q ss_pred CCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcC---CcEEEEe------
Q 041382 181 PMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMN---YDIYNLN------ 251 (600)
Q Consensus 181 p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~---~~~~~l~------ 251 (600)
+.+++++...++..+.+.+.+. ...+.+++.||+|+||||+++++..++. ..++.+.
T Consensus 56 ~~~l~~lg~~~~~~~~l~~~~~--------------~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~ 121 (264)
T cd01129 56 ILDLEKLGLKPENLEIFRKLLE--------------KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ 121 (264)
T ss_pred CCCHHHcCCCHHHHHHHHHHHh--------------cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec
Confidence 4568888887777666544431 1123578999999999999999988774 3345442
Q ss_pred cCccC-----C--hhHHHHHHhhC--CCcceeeecchh
Q 041382 252 LSVVT-----S--DSSLEYLLLHV--PNRSILVVEDID 280 (600)
Q Consensus 252 ~~~~~-----~--~~~l~~~~~~~--~~~sIL~iDeiD 280 (600)
...+. . ...+...+..+ ..|.+|++.||.
T Consensus 122 ~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 122 IPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 11110 0 11233333332 479999999994
No 380
>PRK06696 uridine kinase; Validated
Probab=96.67 E-value=0.0056 Score=61.01 Aligned_cols=43 Identities=9% Similarity=0.172 Sum_probs=34.3
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCChhHH
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTSDSSL 261 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~~~~l 261 (600)
+.-+.+.|+||+||||+|+.||..+ |.+++.+.+.++......
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~ 67 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVI 67 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHH
Confidence 4467899999999999999999998 677887777777644333
No 381
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.66 E-value=0.0011 Score=61.83 Aligned_cols=26 Identities=27% Similarity=0.520 Sum_probs=22.5
Q ss_pred eeCCCCCCHHHHHHHHHHHcCCcEEE
Q 041382 224 LYGPPGTGKSSLIAAMANYMNYDIYN 249 (600)
Q Consensus 224 L~GppGtGKTsla~alA~~l~~~~~~ 249 (600)
+.||||+|||++++.||..+|+..+.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is 26 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHIS 26 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceec
Confidence 57999999999999999999765443
No 382
>PLN02199 shikimate kinase
Probab=96.65 E-value=0.0033 Score=64.79 Aligned_cols=33 Identities=24% Similarity=0.508 Sum_probs=30.7
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
++.++|.|++|+|||++++.+|+.+|+++++.|
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 358999999999999999999999999999877
No 383
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.64 E-value=0.0017 Score=61.23 Aligned_cols=29 Identities=24% Similarity=0.591 Sum_probs=26.4
Q ss_pred eeeeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 041382 222 YLLYGPPGTGKSSLIAAMANYMNYDIYNL 250 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l~~~~~~l 250 (600)
+.++|+||+|||++++.+|+.++.+++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 68999999999999999999999887654
No 384
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=96.64 E-value=0.0025 Score=58.90 Aligned_cols=50 Identities=16% Similarity=0.264 Sum_probs=38.7
Q ss_pred CCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCChhHHHHHHhhC
Q 041382 217 VWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYLLLHV 268 (600)
Q Consensus 217 ~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~~~~l~~~~~~~ 268 (600)
+.+..+++-|++||||||++++++.+++.+|++- .++.+..+.+++-...
T Consensus 10 ~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dg--Dd~Hp~~NveKM~~Gi 59 (191)
T KOG3354|consen 10 PFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDG--DDLHPPANVEKMTQGI 59 (191)
T ss_pred CCceeEEEEecCCCChhhHHHHHHHHhCCccccc--ccCCCHHHHHHHhcCC
Confidence 4455788999999999999999999999888654 4666666666654433
No 385
>PTZ00035 Rad51 protein; Provisional
Probab=96.63 E-value=0.0075 Score=63.99 Aligned_cols=40 Identities=18% Similarity=0.116 Sum_probs=29.8
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHc---------CCcEEEEecCc
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYM---------NYDIYNLNLSV 254 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l---------~~~~~~l~~~~ 254 (600)
|++.+.-+.++||||||||+++..+|... +..+++++...
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~ 162 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEG 162 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccC
Confidence 66777778899999999999999887532 34555666543
No 386
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.63 E-value=0.0055 Score=64.31 Aligned_cols=40 Identities=15% Similarity=0.051 Sum_probs=30.3
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHH---------cCCcEEEEecCc
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANY---------MNYDIYNLNLSV 254 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~---------l~~~~~~l~~~~ 254 (600)
|++...-++++||||||||.++..+|-. .+..++++|...
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 5777777899999999999999877632 245677777544
No 387
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.63 E-value=0.023 Score=60.96 Aligned_cols=59 Identities=20% Similarity=0.303 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecC
Q 041382 191 GDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLS 253 (600)
Q Consensus 191 ~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~ 253 (600)
.++++.+.+.+...+..+..+ ...++-++|.||+|+||||++..||..+ +..+..+++.
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~----~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aD 278 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVF----EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD 278 (436)
T ss_pred HHHHHHHHHHHHHHhcccccc----ccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Confidence 345666666665555432211 1224678999999999999999999877 3455555543
No 388
>PRK01184 hypothetical protein; Provisional
Probab=96.62 E-value=0.0018 Score=62.34 Aligned_cols=29 Identities=24% Similarity=0.341 Sum_probs=24.6
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNL 250 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~l 250 (600)
-++|.||||+||||+++ ++..+|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 47899999999999887 788898877654
No 389
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.62 E-value=0.0041 Score=58.81 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.2
Q ss_pred CCCcceeeeCCCCCCHHHHHHHHHHHc
Q 041382 217 VWKRGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 217 ~~~rgiLL~GppGtGKTsla~alA~~l 243 (600)
.++.-+.|.||.|+|||||.+.|++..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344568899999999999999999875
No 390
>PRK04296 thymidine kinase; Provisional
Probab=96.61 E-value=0.016 Score=56.39 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=24.0
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHc---CCcEEEE
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYM---NYDIYNL 250 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l---~~~~~~l 250 (600)
-.+++||||+|||+++..++..+ +..++.+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 46899999999999998888765 5565555
No 391
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.61 E-value=0.0045 Score=55.76 Aligned_cols=65 Identities=23% Similarity=0.261 Sum_probs=42.6
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHcCC--------------------cEEEEecCccCChhHHHHH--HhhCCCcceee
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYMNY--------------------DIYNLNLSVVTSDSSLEYL--LLHVPNRSILV 275 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l~~--------------------~~~~l~~~~~~~~~~l~~~--~~~~~~~sIL~ 275 (600)
...-++|+|+=|+|||++++++|..+|. +++.+|+--+.+...+..+ +......+|.+
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg~~~~V~SPTF~l~~~Y~~~~~~l~H~DLYRl~~~~e~~~~g~~e~~~~~~i~~ 93 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARALGIDEEVTSPTFSLVNEYEGGNIPLYHFDLYRLEDPEELEDLGLEEYLFEDGICV 93 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHTT--S----TTTTSEEEEEETTEEEEEEE-TT-SSTHHHHHCTTTTCSSSSEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCCCcCCCCeEEEEEecCCCceEEEeeccccCCHHHHHHCCchhhhCCCCEEE
Confidence 3457899999999999999999998864 3444555555555544432 23335678888
Q ss_pred ecchhhh
Q 041382 276 VEDIDCS 282 (600)
Q Consensus 276 iDeiD~l 282 (600)
|+=-+.+
T Consensus 94 IEW~e~~ 100 (123)
T PF02367_consen 94 IEWPERL 100 (123)
T ss_dssp EESGGGG
T ss_pred EECcccc
Confidence 8755544
No 392
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.60 E-value=0.0048 Score=64.39 Aligned_cols=25 Identities=28% Similarity=0.563 Sum_probs=23.2
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHc
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l 243 (600)
++++++.||+|+||||+++++++++
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999986
No 393
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.60 E-value=0.0014 Score=64.66 Aligned_cols=22 Identities=41% Similarity=0.824 Sum_probs=18.2
Q ss_pred eeeeCCCCCCHHHHHHHHHHHc
Q 041382 222 YLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l 243 (600)
.++.||||||||+++.+++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 7899999999998887777766
No 394
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.60 E-value=0.0076 Score=69.95 Aligned_cols=70 Identities=13% Similarity=0.170 Sum_probs=44.4
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHH---HcCCcEEEEecCccC---------------------ChhHHHHHH---hh
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMAN---YMNYDIYNLNLSVVT---------------------SDSSLEYLL---LH 267 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~---~l~~~~~~l~~~~~~---------------------~~~~l~~~~---~~ 267 (600)
|++..+.++++||||||||+|+..++. ..|..+..++...-. ......... ..
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 577777889999999999999965433 235566666543311 111111111 12
Q ss_pred CCCcceeeecchhhhhh
Q 041382 268 VPNRSILVVEDIDCSIK 284 (600)
Q Consensus 268 ~~~~sIL~iDeiD~l~~ 284 (600)
...+.+|+||-|..+..
T Consensus 136 ~~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 136 SGALDIVVIDSVAALVP 152 (790)
T ss_pred cCCCeEEEEcchhhhcc
Confidence 23688999999998863
No 395
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.59 E-value=0.013 Score=56.15 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=23.2
Q ss_pred CCCcceeeeCCCCCCHHHHHHHHHHHc
Q 041382 217 VWKRGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 217 ~~~rgiLL~GppGtGKTsla~alA~~l 243 (600)
+++.-+.|.||+|+|||||++++|+..
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 344568899999999999999999975
No 396
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.59 E-value=0.0023 Score=58.52 Aligned_cols=29 Identities=24% Similarity=0.421 Sum_probs=25.3
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHcCCc
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYMNYD 246 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l~~~ 246 (600)
++.-++|.|+.|+|||++++++++.++..
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 34468899999999999999999999854
No 397
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.59 E-value=0.0078 Score=63.84 Aligned_cols=40 Identities=15% Similarity=0.091 Sum_probs=29.8
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHc---------CCcEEEEecCc
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYM---------NYDIYNLNLSV 254 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l---------~~~~~~l~~~~ 254 (600)
|++.+.-+.|+||||||||.|+..+|-.. +..++++|...
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~ 170 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG 170 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC
Confidence 56777778899999999999999876322 34666776544
No 398
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=96.58 E-value=0.0019 Score=68.18 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=20.9
Q ss_pred CCCcceeeeCCCCCCHHHHHHHHHH
Q 041382 217 VWKRGYLLYGPPGTGKSSLIAAMAN 241 (600)
Q Consensus 217 ~~~rgiLL~GppGtGKTsla~alA~ 241 (600)
.+|+|++|||.-|||||+|.-..-.
T Consensus 112 ~~PkGlYlYG~VGcGKTmLMDlFy~ 136 (467)
T KOG2383|consen 112 GPPKGLYLYGSVGCGKTMLMDLFYD 136 (467)
T ss_pred CCCceEEEecccCcchhHHHHHHhh
Confidence 3478999999999999999876543
No 399
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.57 E-value=0.0049 Score=60.78 Aligned_cols=23 Identities=35% Similarity=0.755 Sum_probs=21.3
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHc
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l 243 (600)
+.|+.|||||||||+.+-+|..+
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~ 161 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLL 161 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHh
Confidence 68999999999999999999976
No 400
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.55 E-value=0.0015 Score=61.54 Aligned_cols=26 Identities=38% Similarity=0.683 Sum_probs=20.6
Q ss_pred eeeeCCCCCCHHHHHHHHHHHcCCcEE
Q 041382 222 YLLYGPPGTGKSSLIAAMANYMNYDIY 248 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l~~~~~ 248 (600)
|.|.|+||||||||++++|.. |.+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 679999999999999999999 76655
No 401
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.53 E-value=0.0027 Score=59.19 Aligned_cols=30 Identities=30% Similarity=0.534 Sum_probs=25.7
Q ss_pred eeeeCCCCCCHHHHHHHHHHHc---CCcEEEEe
Q 041382 222 YLLYGPPGTGKSSLIAAMANYM---NYDIYNLN 251 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l---~~~~~~l~ 251 (600)
+++.|+||+|||++++.++..+ +.+.+.++
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~ 34 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLD 34 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 6899999999999999999998 65666654
No 402
>PHA00350 putative assembly protein
Probab=96.52 E-value=0.015 Score=62.64 Aligned_cols=119 Identities=13% Similarity=0.130 Sum_probs=64.2
Q ss_pred ceeeeCCCCCCHHHHHHH--HHH--HcCCcEEEEecCccCCh--------------------------hHHHHHHhhCCC
Q 041382 221 GYLLYGPPGTGKSSLIAA--MAN--YMNYDIYNLNLSVVTSD--------------------------SSLEYLLLHVPN 270 (600)
Q Consensus 221 giLL~GppGtGKTsla~a--lA~--~l~~~~~~l~~~~~~~~--------------------------~~l~~~~~~~~~ 270 (600)
-++++|.||+|||+-+-. +-. ..|+.++. ++..+.-+ ......+...+.
T Consensus 3 I~l~tG~pGSGKT~~aV~~~i~palk~GR~V~T-NI~Gl~le~i~~~~~~~p~~~~li~i~~~~~~~~~~~~~~~~w~p~ 81 (399)
T PHA00350 3 IYAIVGRPGSYKSYEAVVYHIIPALKDGRKVIT-NIPGLNLDVFEKVFGEFPSTARLIRIVDRNLEGFESMNRPFSWRPR 81 (399)
T ss_pred eEEEecCCCCchhHHHHHHHHHHHHHCCCEEEE-CCCCCCHHHHHhhcccCcccceeEEeccccccchhhhccccccCCC
Confidence 368999999999998875 322 33665553 43322100 011111222457
Q ss_pred cceeeecchhhhhhhhccccCCC-C---CCCCC----CCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHH
Q 041382 271 RSILVVEDIDCSIKLQNRESQKG-D---EPADS----YRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALL 342 (600)
Q Consensus 271 ~sIL~iDeiD~l~~~~~r~~~~~-~---~~~~~----~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLl 342 (600)
.++|||||+..+++ .|.+... + ...+. .+.........+.... ..+.=||++|.++..||..++
T Consensus 82 gaLIViDEaq~~~p--~r~~~~~~~~~~~p~~~~~~~~~~~p~~~i~~l~~HR------H~G~DIiliTQ~~~~Id~~iR 153 (399)
T PHA00350 82 GALYVIDEAQMIFP--KRLGFKMANIFKRPFTDFEPHLPEGPENFLEAFMRHR------HYNWDIILLTPNIRKIHSDIR 153 (399)
T ss_pred CCEEEEECchhhcC--CCccccccccccccccccccccccCCHHHHHHHHHhc------ccCceEEEEeCCHHHhhHHHH
Confidence 78999999999986 3322000 0 00000 0001112222222211 123558889999999999998
Q ss_pred hcCCcceE
Q 041382 343 RAGRMDRH 350 (600)
Q Consensus 343 rpgRfd~~ 350 (600)
. +++++
T Consensus 154 ~--lvE~~ 159 (399)
T PHA00350 154 A--MIEMT 159 (399)
T ss_pred H--hhhhe
Confidence 7 77653
No 403
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.50 E-value=0.034 Score=67.67 Aligned_cols=130 Identities=16% Similarity=0.170 Sum_probs=81.4
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCChhHH---------------HHHHhhC-CCcceeeecchhhhhh
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSL---------------EYLLLHV-PNRSILVVEDIDCSIK 284 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~~~~l---------------~~~~~~~-~~~sIL~iDeiD~l~~ 284 (600)
.+|+.||..||||+++..+|...|..++.++-..-.+-... ..++.++ ++.--|++||+.....
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~GyWIVLDELNLApT 969 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRGYWIVLDELNLAPT 969 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcCcEEEeeccccCcH
Confidence 58999999999999999999999999999985433211111 1233333 3456789999864321
Q ss_pred hhccccCCCCCCCCCCCChHHHHHHHHHhhcCccc-------cCCCeeEEEEecCCcC------cCCHHHHhcCCcceEE
Q 041382 285 LQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLC-------CCGDEKITVFTTNYKD------RIDPALLRAGRMDRHI 351 (600)
Q Consensus 285 ~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~-------~~~~~~iiI~TTN~~~------~Ld~aLlrpgRfd~~I 351 (600)
..-..++.||.--..+.- .+-.+..+++|-|.|. .|..|++. || ..+
T Consensus 970 -----------------DVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RF-lE~ 1029 (4600)
T COG5271 970 -----------------DVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RF-LEM 1029 (4600)
T ss_pred -----------------HHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hh-Hhh
Confidence 122233444322111100 1123456667777654 36788888 99 678
Q ss_pred EeCCCCHHHHHHHHHHhcC
Q 041382 352 NLSYCTFSTFKQLAANYLD 370 (600)
Q Consensus 352 ~~~~p~~e~r~~il~~~l~ 370 (600)
+|..-..++...|++....
T Consensus 1030 hFddipedEle~ILh~rc~ 1048 (4600)
T COG5271 1030 HFDDIPEDELEEILHGRCE 1048 (4600)
T ss_pred hcccCcHHHHHHHHhccCc
Confidence 8877777888888775443
No 404
>PRK14526 adenylate kinase; Provisional
Probab=96.50 E-value=0.0024 Score=63.24 Aligned_cols=28 Identities=32% Similarity=0.724 Sum_probs=24.8
Q ss_pred eeeeCCCCCCHHHHHHHHHHHcCCcEEE
Q 041382 222 YLLYGPPGTGKSSLIAAMANYMNYDIYN 249 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l~~~~~~ 249 (600)
++|.||||+||||+++.+|..++...+.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 7899999999999999999998866543
No 405
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.50 E-value=0.0083 Score=66.23 Aligned_cols=69 Identities=23% Similarity=0.279 Sum_probs=46.1
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccC--------------------ChhHHHHHHhh--CC
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVT--------------------SDSSLEYLLLH--VP 269 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~--------------------~~~~l~~~~~~--~~ 269 (600)
|++++.-+|++|+||+|||+|+..+|..+ +.++++++...-. ....+..+... ..
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 67777788999999999999999987765 3466666643211 01112222221 23
Q ss_pred Ccceeeecchhhhh
Q 041382 270 NRSILVVEDIDCSI 283 (600)
Q Consensus 270 ~~sIL~iDeiD~l~ 283 (600)
.|.+++||.|-.+.
T Consensus 170 ~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 170 NPQACVIDSIQTLY 183 (454)
T ss_pred CCcEEEEecchhhc
Confidence 68899999998874
No 406
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.50 E-value=0.0024 Score=62.41 Aligned_cols=36 Identities=33% Similarity=0.497 Sum_probs=27.7
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT 256 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~ 256 (600)
-++++||+|||||.++-++|+.+|.+++.+|--..+
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y 38 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCY 38 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecc
Confidence 478999999999999999999999999999854443
No 407
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.50 E-value=0.0023 Score=66.56 Aligned_cols=28 Identities=29% Similarity=0.279 Sum_probs=23.8
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHc-CCcE
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYM-NYDI 247 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l-~~~~ 247 (600)
.-+++.|||||||||+++.++..+ +..+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~ 31 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVN 31 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEE
Confidence 357899999999999999999998 4433
No 408
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.49 E-value=0.0049 Score=59.31 Aligned_cols=66 Identities=12% Similarity=0.145 Sum_probs=39.2
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHcCCc--EEEEec-------C--ccCChhHHHHHH--hhCCCcceeeecchhhhh
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYMNYD--IYNLNL-------S--VVTSDSSLEYLL--LHVPNRSILVVEDIDCSI 283 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l~~~--~~~l~~-------~--~~~~~~~l~~~~--~~~~~~sIL~iDeiD~l~ 283 (600)
.+.-+.|.||.|+|||||++.+++.+... -+.++. . .+.....-+-.+ .-...|.++++||--.-+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~L 102 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYL 102 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 34467799999999999999999975211 111111 1 122222222222 223589999999986443
No 409
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.49 E-value=0.0075 Score=63.08 Aligned_cols=81 Identities=16% Similarity=0.289 Sum_probs=49.2
Q ss_pred ChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEe----cCccCChhHHHHHH
Q 041382 190 DGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN----LSVVTSDSSLEYLL 265 (600)
Q Consensus 190 ~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~----~~~~~~~~~l~~~~ 265 (600)
++++++-+.+.+-.-+.. ..+....++|+|+.|+|||++++.+...+|-...... +..+.+. +..+
T Consensus 54 d~~~~~~l~~~lg~~L~~-------~~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~~~~~---~f~~ 123 (304)
T TIGR01613 54 DNELIEYLQRVIGYSLTG-------NYTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEFQEH---RFGL 123 (304)
T ss_pred CHHHHHHHHHHHhHHhcC-------CCCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhhccCC---Cchh
Confidence 445565565555433332 1345568899999999999999999998886542221 2221110 1122
Q ss_pred hhCCCcceeeecchh
Q 041382 266 LHVPNRSILVVEDID 280 (600)
Q Consensus 266 ~~~~~~sIL~iDeiD 280 (600)
......-+++.+|++
T Consensus 124 a~l~gk~l~~~~E~~ 138 (304)
T TIGR01613 124 ARLEGKRAVIGDEVQ 138 (304)
T ss_pred hhhcCCEEEEecCCC
Confidence 333456788889986
No 410
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.49 E-value=0.017 Score=54.65 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=18.8
Q ss_pred cceeeeCCCCCCHHH-HHHHHHHHc
Q 041382 220 RGYLLYGPPGTGKSS-LIAAMANYM 243 (600)
Q Consensus 220 rgiLL~GppGtGKTs-la~alA~~l 243 (600)
+.+++.||+|||||. ++..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 489999999999999 555555544
No 411
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.47 E-value=0.097 Score=54.92 Aligned_cols=98 Identities=13% Similarity=0.115 Sum_probs=52.9
Q ss_pred CcceeeecchhhhhhhhccccCCCCCCCCCCCChH-HHHHHHHHhhcCccccCCCeeEE-EEecC---CcC--cCCHHHH
Q 041382 270 NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQ-VTLAGLLNAIDGLLCCCGDEKIT-VFTTN---YKD--RIDPALL 342 (600)
Q Consensus 270 ~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~-~~ls~lL~~ldg~~~~~~~~~ii-I~TTN---~~~--~Ld~aLl 342 (600)
-|.++-||++.+++..+.-. +.....-.... .....|++.+.|-..-.++.+++ +.+|. .+. .++.+|.
T Consensus 156 ~PVL~avD~~n~l~~~S~Y~----~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~~~~~l~~~L~ 231 (309)
T PF10236_consen 156 PPVLVAVDGFNALFGPSAYR----DPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAPKSPTLPVALG 231 (309)
T ss_pred CceEEEehhhHHhhCCcccc----CCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccccCCccchhhhc
Confidence 47788999999998632111 11001111222 33344555544444333333332 44442 333 5677777
Q ss_pred hcCCc---c----------------eEEEeCCCCHHHHHHHHHHhcCc
Q 041382 343 RAGRM---D----------------RHINLSYCTFSTFKQLAANYLDI 371 (600)
Q Consensus 343 rpgRf---d----------------~~I~~~~p~~e~r~~il~~~l~~ 371 (600)
...-+ | ..|+++..+.++.+.++..|...
T Consensus 232 ~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~ 279 (309)
T PF10236_consen 232 GKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADS 279 (309)
T ss_pred cccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHC
Confidence 42111 1 26889999999999999977754
No 412
>PLN02459 probable adenylate kinase
Probab=96.45 E-value=0.007 Score=61.56 Aligned_cols=29 Identities=17% Similarity=0.464 Sum_probs=25.1
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEE
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYN 249 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~ 249 (600)
.++|.||||+||||+++.+|..+++..+.
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~~~~is 59 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLGVPHIA 59 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 47889999999999999999999865543
No 413
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.43 E-value=0.12 Score=52.13 Aligned_cols=133 Identities=19% Similarity=0.121 Sum_probs=75.5
Q ss_pred CCcce-eeeCCCCCCHHHHHHHHHHHcCCcE---EEEecCccCC--------------------------hhHHHHHHhh
Q 041382 218 WKRGY-LLYGPPGTGKSSLIAAMANYMNYDI---YNLNLSVVTS--------------------------DSSLEYLLLH 267 (600)
Q Consensus 218 ~~rgi-LL~GppGtGKTsla~alA~~l~~~~---~~l~~~~~~~--------------------------~~~l~~~~~~ 267 (600)
..+|+ .+.|+-|||||.+++|+...++.+- +.++...+.. ...+..++.+
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~ 128 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKK 128 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHh
Confidence 34554 5899999999999998887775432 2333333221 1223344455
Q ss_pred CCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecC-CcCcCCH---HHHh
Q 041382 268 VPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTN-YKDRIDP---ALLR 343 (600)
Q Consensus 268 ~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN-~~~~Ld~---aLlr 343 (600)
..+|.++++||.+.+.+ ..-..+.-|.|.-++.... -.+++|+=.. .+..--| .+..
T Consensus 129 g~r~v~l~vdEah~L~~-----------------~~le~Lrll~nl~~~~~~~--l~ivL~Gqp~L~~~lr~~~l~e~~~ 189 (269)
T COG3267 129 GKRPVVLMVDEAHDLND-----------------SALEALRLLTNLEEDSSKL--LSIVLIGQPKLRPRLRLPVLRELEQ 189 (269)
T ss_pred CCCCeEEeehhHhhhCh-----------------hHHHHHHHHHhhcccccCc--eeeeecCCcccchhhchHHHHhhhh
Confidence 56789999999998743 0111222233332222111 2244444322 1111122 2335
Q ss_pred cCCcceEEEeCCCCHHHHHHHHHHhcCc
Q 041382 344 AGRMDRHINLSYCTFSTFKQLAANYLDI 371 (600)
Q Consensus 344 pgRfd~~I~~~~p~~e~r~~il~~~l~~ 371 (600)
|++..|++++.+.++-...++..++.
T Consensus 190 --R~~ir~~l~P~~~~~t~~yl~~~Le~ 215 (269)
T COG3267 190 --RIDIRIELPPLTEAETGLYLRHRLEG 215 (269)
T ss_pred --eEEEEEecCCcChHHHHHHHHHHHhc
Confidence 88877999999999777777766654
No 414
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.42 E-value=0.003 Score=63.96 Aligned_cols=30 Identities=37% Similarity=0.606 Sum_probs=25.0
Q ss_pred eeeeCCCCCCHHHHHHHHHHHc---CCcEEEEe
Q 041382 222 YLLYGPPGTGKSSLIAAMANYM---NYDIYNLN 251 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l---~~~~~~l~ 251 (600)
++|.|+||+||||+|+++|..+ +.+++.++
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~ 34 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILG 34 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEc
Confidence 6899999999999999999988 45555554
No 415
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.41 E-value=0.0035 Score=64.34 Aligned_cols=62 Identities=15% Similarity=0.291 Sum_probs=34.4
Q ss_pred eeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccC----------ChhHHHHHHhhC-----CCcceeeecchhhhh
Q 041382 222 YLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVT----------SDSSLEYLLLHV-----PNRSILVVEDIDCSI 283 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~----------~~~~l~~~~~~~-----~~~sIL~iDeiD~l~ 283 (600)
++|+|.||+|||++|+.|+.++ +..+..++-..+. .+..++..+... ....|+++|+...+-
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYiK 83 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYIK 83 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---SH
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchHH
Confidence 7899999999999999999986 5666666533221 123333333222 456899999987663
No 416
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.38 E-value=0.0076 Score=59.01 Aligned_cols=62 Identities=18% Similarity=0.254 Sum_probs=39.2
Q ss_pred cceeeeCCCCCCHHHHHHHHHHH-----cCCcE--------------EEEecCccC---------ChhHHHHHHhhCCCc
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANY-----MNYDI--------------YNLNLSVVT---------SDSSLEYLLLHVPNR 271 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~-----l~~~~--------------~~l~~~~~~---------~~~~l~~~~~~~~~~ 271 (600)
+-++|.||.|+|||++.+.++.. .|..+ ..++..+.. .-..+..++.....|
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i~~~~~~~ 109 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLELKEILSLATPR 109 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHHHHHHHHHHHhccCC
Confidence 46899999999999999999932 22211 111111100 113344555556789
Q ss_pred ceeeecchhh
Q 041382 272 SILVVEDIDC 281 (600)
Q Consensus 272 sIL~iDeiD~ 281 (600)
.++++||.-.
T Consensus 110 ~llllDEp~~ 119 (202)
T cd03243 110 SLVLIDELGR 119 (202)
T ss_pred eEEEEecCCC
Confidence 9999999854
No 417
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.38 E-value=0.0027 Score=61.33 Aligned_cols=29 Identities=34% Similarity=0.509 Sum_probs=25.1
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEE
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYN 249 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~ 249 (600)
-+.|.||+|+||||+++.||..++.+++.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~~~~~~ 32 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQTQLLV 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCeEEE
Confidence 57899999999999999999988765543
No 418
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.36 E-value=0.015 Score=58.07 Aligned_cols=62 Identities=23% Similarity=0.331 Sum_probs=40.7
Q ss_pred CcceeeeCCCCCCHHHHHHHHHH-Hc----CCc---------EE-----EEecC-ccC--------ChhHHHHHHhhCCC
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMAN-YM----NYD---------IY-----NLNLS-VVT--------SDSSLEYLLLHVPN 270 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~-~l----~~~---------~~-----~l~~~-~~~--------~~~~l~~~~~~~~~ 270 (600)
++-++|.||.|+|||++.+.++. .+ |.. ++ .+... ++. .-.++..++..+..
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~ 110 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCTS 110 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhCCC
Confidence 34689999999999999999988 21 211 11 11111 111 11345667777889
Q ss_pred cceeeecchh
Q 041382 271 RSILVVEDID 280 (600)
Q Consensus 271 ~sIL~iDeiD 280 (600)
+++++|||+.
T Consensus 111 ~sLvllDE~~ 120 (222)
T cd03287 111 RSLVILDELG 120 (222)
T ss_pred CeEEEEccCC
Confidence 9999999984
No 419
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.34 E-value=0.022 Score=55.68 Aligned_cols=117 Identities=20% Similarity=0.288 Sum_probs=66.9
Q ss_pred CHHHHHHhC--CCCCcceeeeCCCCCCHHHHHHHHHHHc---CCc----------------------------------E
Q 041382 207 GKEYYRKIG--KVWKRGYLLYGPPGTGKSSLIAAMANYM---NYD----------------------------------I 247 (600)
Q Consensus 207 ~~~~y~~~g--~~~~rgiLL~GppGtGKTsla~alA~~l---~~~----------------------------------~ 247 (600)
+.+.-+++| +|.+.=+|+-|+.|||||.|.+.+|-=+ +.. +
T Consensus 14 ndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~ 93 (235)
T COG2874 14 NDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLF 93 (235)
T ss_pred cHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEE
Confidence 334445554 6666667889999999999999887621 222 2
Q ss_pred EEEecCccCChhH-----HHHHHhh--CCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCcccc
Q 041382 248 YNLNLSVVTSDSS-----LEYLLLH--VPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCC 320 (600)
Q Consensus 248 ~~l~~~~~~~~~~-----l~~~~~~--~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~ 320 (600)
+.++...+..+.. |..++.. ..+..|++||-+..+.. ......+..|++.+..+.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~----------------~~~~~~vl~fm~~~r~l~d- 156 (235)
T COG2874 94 FPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFAT----------------YDSEDAVLNFMTFLRKLSD- 156 (235)
T ss_pred EEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhh----------------cccHHHHHHHHHHHHHHHh-
Confidence 2333222222222 2222222 23578999999988753 1122344455555555533
Q ss_pred CCCeeEEEEecCCcCcCCHHHHh
Q 041382 321 CGDEKITVFTTNYKDRIDPALLR 343 (600)
Q Consensus 321 ~~~~~iiI~TTN~~~~Ld~aLlr 343 (600)
.+.+||+|. ||..+|.+++-
T Consensus 157 --~gKvIilTv-hp~~l~e~~~~ 176 (235)
T COG2874 157 --LGKVIILTV-HPSALDEDVLT 176 (235)
T ss_pred --CCCEEEEEe-ChhhcCHHHHH
Confidence 335555555 56788888886
No 420
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.33 E-value=0.0077 Score=61.77 Aligned_cols=83 Identities=19% Similarity=0.231 Sum_probs=51.6
Q ss_pred ccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCCh----hHH
Q 041382 186 TLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSD----SSL 261 (600)
Q Consensus 186 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~~----~~l 261 (600)
+++..+++.+-|.... +-+. .+++..||.|.+||||+++++..|.-.+..++.+..+.-.+- .++
T Consensus 9 ~lVlf~~ai~hi~ri~-RvL~----------~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~~~~f~~dL 77 (268)
T PF12780_consen 9 NLVLFDEAIEHIARIS-RVLS----------QPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYSIKDFKEDL 77 (268)
T ss_dssp -----HHHHHHHHHHH-HHHC----------STTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTHHHHHHHHH
T ss_pred ceeeHHHHHHHHHHHH-HHHc----------CCCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcCHHHHHHHH
Confidence 3555666665555433 2222 234578999999999999999999999999999987664433 345
Q ss_pred HHHHhhC---CCcceeeecch
Q 041382 262 EYLLLHV---PNRSILVVEDI 279 (600)
Q Consensus 262 ~~~~~~~---~~~sIL~iDei 279 (600)
+.++..+ ..|++++|+|-
T Consensus 78 k~~~~~ag~~~~~~vfll~d~ 98 (268)
T PF12780_consen 78 KKALQKAGIKGKPTVFLLTDS 98 (268)
T ss_dssp HHHHHHHHCS-S-EEEEEECC
T ss_pred HHHHHHHhccCCCeEEEecCc
Confidence 5555444 35777777553
No 421
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.33 E-value=0.0083 Score=57.09 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=23.4
Q ss_pred CCCcceeeeCCCCCCHHHHHHHHHHHc
Q 041382 217 VWKRGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 217 ~~~rgiLL~GppGtGKTsla~alA~~l 243 (600)
+++.-+.|.||+|+|||||.+.||+.+
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 344568899999999999999999975
No 422
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.32 E-value=0.0042 Score=63.50 Aligned_cols=39 Identities=18% Similarity=0.129 Sum_probs=31.5
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHH---cCCcEEEEecC
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANY---MNYDIYNLNLS 253 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~---l~~~~~~l~~~ 253 (600)
|++.+..++++||||||||+++..+|.. .|.++..++..
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 6777788999999999999999987664 26677777764
No 423
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.32 E-value=0.0038 Score=62.17 Aligned_cols=38 Identities=24% Similarity=0.366 Sum_probs=28.7
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHc----CCcEEEEec
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYM----NYDIYNLNL 252 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l----~~~~~~l~~ 252 (600)
|+|.+..+|+.||||||||+++..++... |.+++.+..
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ 56 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF 56 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe
Confidence 77888889999999999999998765422 677766654
No 424
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.31 E-value=0.0046 Score=59.04 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=23.3
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
+.-++|.|+||+||||+++++++.+.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 44688999999999999999999885
No 425
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.31 E-value=0.075 Score=57.39 Aligned_cols=44 Identities=27% Similarity=0.355 Sum_probs=30.6
Q ss_pred EEEEecC--CcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCc
Q 041382 326 ITVFTTN--YKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDI 371 (600)
Q Consensus 326 iiI~TTN--~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~ 371 (600)
+|+.|++ ....|..|| |.|.-+.|.++.++++.-+..+...|..
T Consensus 186 VIFlT~dv~~~k~LskaL--Pn~vf~tI~L~Das~~~Ak~yV~~~L~~ 231 (431)
T PF10443_consen 186 VIFLTDDVSYSKPLSKAL--PNRVFKTISLSDASPESAKQYVLSQLDE 231 (431)
T ss_pred EEEECCCCchhhhHHHhC--CCCceeEEeecCCCHHHHHHHHHHHhcc
Confidence 4444444 334455565 4477789999999999888877777764
No 426
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.31 E-value=0.0043 Score=60.72 Aligned_cols=28 Identities=32% Similarity=0.405 Sum_probs=24.9
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCcE
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYDI 247 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~~ 247 (600)
.-+++.|+||+||||+++.+|..++...
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 4688999999999999999999988654
No 427
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.29 E-value=0.0049 Score=58.81 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=26.9
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEec
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNL 252 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~ 252 (600)
+.-+.|.|+||+|||++++++|..+ +.++..++.
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~ 40 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDG 40 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcC
Confidence 3467899999999999999999987 334555553
No 428
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.29 E-value=0.02 Score=63.57 Aligned_cols=26 Identities=35% Similarity=0.497 Sum_probs=22.3
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHc
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l 243 (600)
+++.+.|.||+|+||||++..||..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 35577899999999999999998864
No 429
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.29 E-value=0.012 Score=64.44 Aligned_cols=62 Identities=16% Similarity=0.194 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCcc
Q 041382 193 LKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVV 255 (600)
Q Consensus 193 ~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~ 255 (600)
+.+.+.+.+...+.......... ..|..++|+||||+||||++..+|.++ |..+..+++...
T Consensus 70 ~~~~v~~~L~~~l~~~~~~~~~~-~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 70 VIKIVYEELVKLLGEETEPLVLP-LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred HHHHHHHHHHHHhCCCccccccC-CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 34555555544443221111111 345678999999999999999999977 566666666544
No 430
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.25 E-value=0.0056 Score=61.62 Aligned_cols=40 Identities=30% Similarity=0.241 Sum_probs=32.0
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHH---cCCcEEEEecCc
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANY---MNYDIYNLNLSV 254 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~---l~~~~~~l~~~~ 254 (600)
|++.+..+|++||||||||+++..++.. -|.+.+.+....
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 7888888999999999999999866543 367787777643
No 431
>PRK10436 hypothetical protein; Provisional
Probab=96.25 E-value=0.031 Score=61.72 Aligned_cols=86 Identities=19% Similarity=0.297 Sum_probs=53.4
Q ss_pred CCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcC---CcEEEEe------
Q 041382 181 PMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMN---YDIYNLN------ 251 (600)
Q Consensus 181 p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~---~~~~~l~------ 251 (600)
+.+|+++.+.+...+.+.+.+.. +.+.+|+.||+|+||||+..++.++++ .+++.+.
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~~--------------~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~ 259 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQQ--------------PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIP 259 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHHh--------------cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCcccc
Confidence 35788898888777666654421 223578999999999999988877774 3344442
Q ss_pred cCcc-----C--ChhHHHHHHhhC--CCcceeeecchh
Q 041382 252 LSVV-----T--SDSSLEYLLLHV--PNRSILVVEDID 280 (600)
Q Consensus 252 ~~~~-----~--~~~~l~~~~~~~--~~~sIL~iDeiD 280 (600)
+..+ . ....+...+... ..|-||+|.||-
T Consensus 260 l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 260 LAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred CCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 1111 0 111233333333 368899998883
No 432
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=96.24 E-value=0.0092 Score=66.11 Aligned_cols=67 Identities=21% Similarity=0.352 Sum_probs=44.5
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCc--cC------ChhHHHHHHhhC-----CCcceeeecchhhhhhhhc
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSV--VT------SDSSLEYLLLHV-----PNRSILVVEDIDCSIKLQN 287 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~l~~~~--~~------~~~~l~~~~~~~-----~~~sIL~iDeiD~l~~~~~ 287 (600)
++||.|-||||||-+.+.+++-..+.++.--.+. +. .+.--+.+..++ ..+.|-+|||+|.+-+ ++
T Consensus 484 nvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMnd-qD 562 (854)
T KOG0477|consen 484 NVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMND-QD 562 (854)
T ss_pred eEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeCCccceeeeccCeEEEccCceEEeehhhhhcc-cc
Confidence 5899999999999999999998877766532211 11 011112222222 3578999999999854 44
Q ss_pred c
Q 041382 288 R 288 (600)
Q Consensus 288 r 288 (600)
|
T Consensus 563 R 563 (854)
T KOG0477|consen 563 R 563 (854)
T ss_pred c
Confidence 4
No 433
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.23 E-value=0.0094 Score=62.45 Aligned_cols=51 Identities=12% Similarity=0.109 Sum_probs=37.3
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHc---------CCcEEEEecCccCChhHHHHHH
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYM---------NYDIYNLNLSVVTSDSSLEYLL 265 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l---------~~~~~~l~~~~~~~~~~l~~~~ 265 (600)
|++.+.-++++||||||||+++-.+|... +..+++++...-.+...+....
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~ 150 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMA 150 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHH
Confidence 56777778999999999999999988653 3377888876543444555444
No 434
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.23 E-value=0.0058 Score=62.33 Aligned_cols=50 Identities=22% Similarity=0.158 Sum_probs=37.3
Q ss_pred hCCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCChhHHHHHH
Q 041382 214 IGKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTSDSSLEYLL 265 (600)
Q Consensus 214 ~g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~~~~l~~~~ 265 (600)
-|.|.++.+|++|+||||||+++...+... |.+++.+.... +...+.+.+
T Consensus 18 GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e--~~~~l~~~~ 70 (260)
T COG0467 18 GGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE--SPEELLENA 70 (260)
T ss_pred CCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecC--CHHHHHHHH
Confidence 367888889999999999999998877654 67788887654 334444443
No 435
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.20 E-value=0.0046 Score=59.39 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=25.7
Q ss_pred eeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 222 YLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
+.|+|+||+||||+++.+++ +|+++++.|
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D 30 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDAD 30 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEecC
Confidence 67999999999999999999 888877665
No 436
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.19 E-value=0.0074 Score=57.23 Aligned_cols=36 Identities=28% Similarity=0.460 Sum_probs=30.8
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCcc
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVV 255 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~ 255 (600)
..+.|.|.+|+||||+|.|++..| |+++|.+|...+
T Consensus 24 ~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnv 62 (197)
T COG0529 24 AVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNV 62 (197)
T ss_pred eEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhH
Confidence 467799999999999999999977 889999986443
No 437
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.18 E-value=0.0097 Score=63.35 Aligned_cols=62 Identities=24% Similarity=0.437 Sum_probs=39.2
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcCC----cEEEEecC-c--------------cC-ChhHHHHHHhhC--CCcceeee
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMNY----DIYNLNLS-V--------------VT-SDSSLEYLLLHV--PNRSILVV 276 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~~----~~~~l~~~-~--------------~~-~~~~l~~~~~~~--~~~sIL~i 276 (600)
...+|+.||+|+||||+++++++++.. .++.+.-. . +. ....+...+..+ ..|-+|++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~v 201 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILI 201 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEE
Confidence 346789999999999999999997742 34433211 0 00 011233333332 47999999
Q ss_pred cchh
Q 041382 277 EDID 280 (600)
Q Consensus 277 DeiD 280 (600)
||+.
T Consensus 202 gEir 205 (343)
T TIGR01420 202 GEMR 205 (343)
T ss_pred eCCC
Confidence 9983
No 438
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.14 E-value=0.015 Score=55.40 Aligned_cols=25 Identities=28% Similarity=0.570 Sum_probs=22.1
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHc
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l 243 (600)
+.-+.|.||.|+|||||.+.||+.+
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3457899999999999999999975
No 439
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.14 E-value=0.0062 Score=57.20 Aligned_cols=35 Identities=26% Similarity=0.402 Sum_probs=29.1
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCcc
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVV 255 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~ 255 (600)
.+.|.|.||+||||+|+++...| +.+++.+|...+
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~l 41 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNL 41 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcch
Confidence 57899999999999999999987 788888886443
No 440
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.11 E-value=0.069 Score=57.95 Aligned_cols=36 Identities=22% Similarity=0.372 Sum_probs=27.0
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHc----CCcEEEEecCc
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYM----NYDIYNLNLSV 254 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l----~~~~~~l~~~~ 254 (600)
+.-++|.||+|+||||++..+|..+ |..+..+++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 3458899999999999999999754 44555555443
No 441
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.11 E-value=0.017 Score=60.83 Aligned_cols=25 Identities=40% Similarity=0.699 Sum_probs=22.7
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHc
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l 243 (600)
++++++.||+|+||||++++++.++
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999999874
No 442
>PRK12338 hypothetical protein; Provisional
Probab=96.11 E-value=0.0051 Score=64.33 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=25.8
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcCCcE
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMNYDI 247 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~~~~ 247 (600)
|.-+++.|+|||||||+++++|..+|...
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~~ 32 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIKH 32 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCeE
Confidence 35789999999999999999999998754
No 443
>PRK10646 ADP-binding protein; Provisional
Probab=96.07 E-value=0.023 Score=53.20 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=23.6
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCC
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNY 245 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~ 245 (600)
.-++|.|+=|+|||++++++|+.+|.
T Consensus 29 ~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 29 TVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 46899999999999999999999874
No 444
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.07 E-value=0.023 Score=54.85 Aligned_cols=60 Identities=13% Similarity=0.262 Sum_probs=38.1
Q ss_pred eeeeCCCCCCHHHHHHHHHH-----HcCCcE---------E-----EEecCccC---------ChhHHHHHHhhCCCcce
Q 041382 222 YLLYGPPGTGKSSLIAAMAN-----YMNYDI---------Y-----NLNLSVVT---------SDSSLEYLLLHVPNRSI 273 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~-----~l~~~~---------~-----~l~~~~~~---------~~~~l~~~~~~~~~~sI 273 (600)
++|+||.|+|||++.+.++- ..|..+ + .+...+-. .-..+..++..+..|++
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~l 81 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSL 81 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeE
Confidence 68999999999999999983 223221 1 11111110 11234455666678999
Q ss_pred eeecchhh
Q 041382 274 LVVEDIDC 281 (600)
Q Consensus 274 L~iDeiD~ 281 (600)
+++||.-.
T Consensus 82 lllDEp~~ 89 (185)
T smart00534 82 VLLDELGR 89 (185)
T ss_pred EEEecCCC
Confidence 99999854
No 445
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.06 E-value=0.0049 Score=58.96 Aligned_cols=25 Identities=24% Similarity=0.382 Sum_probs=22.4
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCC
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNY 245 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~ 245 (600)
-+++.||||+||||++++||..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 4789999999999999999998754
No 446
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.06 E-value=0.017 Score=60.76 Aligned_cols=40 Identities=18% Similarity=0.086 Sum_probs=29.9
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHc------C---CcEEEEecCc
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYM------N---YDIYNLNLSV 254 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l------~---~~~~~l~~~~ 254 (600)
|++...-+.++||||+|||+++..+|... | ..+++++...
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~ 140 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEG 140 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCC
Confidence 56777778899999999999999887632 1 2556666554
No 447
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.03 E-value=0.015 Score=59.77 Aligned_cols=38 Identities=24% Similarity=0.251 Sum_probs=29.6
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCcc
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVV 255 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~ 255 (600)
.++-++|.||||+||||++..+|..+ |..+..+++..+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 35678889999999999999999877 556666665443
No 448
>PLN02165 adenylate isopentenyltransferase
Probab=96.03 E-value=0.0058 Score=64.18 Aligned_cols=36 Identities=28% Similarity=0.396 Sum_probs=30.1
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCcc
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVV 255 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~ 255 (600)
.-+.|.||+|+|||+++..||..++..++..|--.+
T Consensus 44 ~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~Qv 79 (334)
T PLN02165 44 KVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQV 79 (334)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHcCCceecCChhee
Confidence 358899999999999999999999988777664433
No 449
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.03 E-value=0.012 Score=62.05 Aligned_cols=36 Identities=19% Similarity=0.160 Sum_probs=28.3
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecC
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLS 253 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~ 253 (600)
.+.-++|.||+|+||||++..+|..+ +..+..+++.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 34568899999999999999999987 4556555543
No 450
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.01 E-value=0.07 Score=58.59 Aligned_cols=52 Identities=25% Similarity=0.311 Sum_probs=40.7
Q ss_pred CCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcc-eeeeCCCCCCHHHHHHHHHHHcCCcE
Q 041382 181 PMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRG-YLLYGPPGTGKSSLIAAMANYMNYDI 247 (600)
Q Consensus 181 p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg-iLL~GppGtGKTsla~alA~~l~~~~ 247 (600)
..+|+.+++.+...+.+...+.. |.| +|+.||.|+||||..-++-++++.+.
T Consensus 234 ~l~l~~Lg~~~~~~~~~~~~~~~---------------p~GliLvTGPTGSGKTTTLY~~L~~ln~~~ 286 (500)
T COG2804 234 ILDLEKLGMSPFQLARLLRLLNR---------------PQGLILVTGPTGSGKTTTLYAALSELNTPE 286 (500)
T ss_pred cCCHHHhCCCHHHHHHHHHHHhC---------------CCeEEEEeCCCCCCHHHHHHHHHHHhcCCC
Confidence 35789999999888877766531 235 57889999999999999999986543
No 451
>PRK13808 adenylate kinase; Provisional
Probab=96.01 E-value=0.0056 Score=64.41 Aligned_cols=29 Identities=24% Similarity=0.466 Sum_probs=25.6
Q ss_pred eeeeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 041382 222 YLLYGPPGTGKSSLIAAMANYMNYDIYNL 250 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l~~~~~~l 250 (600)
++|+||||+|||++++.||..+|+..+++
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is~ 31 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLST 31 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 88999999999999999999998755543
No 452
>PRK13764 ATPase; Provisional
Probab=96.00 E-value=0.0068 Score=68.64 Aligned_cols=26 Identities=38% Similarity=0.767 Sum_probs=23.8
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
++++|+.|||||||||+++|++.++.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999999874
No 453
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=95.99 E-value=0.0066 Score=68.57 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=29.8
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEEEec
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNLNL 252 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~l~~ 252 (600)
-++|.|.||+||||+.+.+|+.++++++++|.
T Consensus 8 ~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~ 39 (542)
T PRK14021 8 QAVIIGMMGAGKTRVGKEVAQMMRLPFADADV 39 (542)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCEEEchH
Confidence 47899999999999999999999999999873
No 454
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.99 E-value=0.014 Score=61.49 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=36.2
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHc---------CCcEEEEecCccCChhHHHHH
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYM---------NYDIYNLNLSVVTSDSSLEYL 264 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l---------~~~~~~l~~~~~~~~~~l~~~ 264 (600)
|++.+.-++++||||||||+++-.+|-.. +..+++++...-.+...+...
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~ 156 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQM 156 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHH
Confidence 57777778999999999999999998653 346777877653333444433
No 455
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=95.97 E-value=0.011 Score=64.17 Aligned_cols=168 Identities=17% Similarity=0.109 Sum_probs=88.7
Q ss_pred ccccChhHHHHHHHHHHHHHhCHHHHHHhC--CCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC---ChhH
Q 041382 186 TLVMDGDLKETVLNDLDCFRRGKEYYRKIG--KVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT---SDSS 260 (600)
Q Consensus 186 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g--~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~---~~~~ 260 (600)
.+.|.+++|+.++-.+..-.. .-..-| +...-+++|-|.||+.||-|.+.+.+..-..+|.---++-. +..-
T Consensus 343 EIyGheDVKKaLLLlLVGgvd---~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSGVGLTAAV 419 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVD---KSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSGVGLTAAV 419 (721)
T ss_pred hhccchHHHHHHHHHhhCCCC---CCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCccccchhh
Confidence 467888888888655532111 000011 11122589999999999999999999887777764322110 0000
Q ss_pred HHH------HHhh----CCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEe
Q 041382 261 LEY------LLLH----VPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFT 330 (600)
Q Consensus 261 l~~------~~~~----~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~T 330 (600)
++. .++. .....|-.|||+|.+.. .+|.+-.. . ..+.++|--- .|+...-+...-|+++
T Consensus 420 mkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e-~DRtAIHE-----V--MEQQTISIaK---AGI~TtLNAR~sILaA 488 (721)
T KOG0482|consen 420 MKDPVTGEMVLEGGALVLADGGICCIDEFDKMDE-SDRTAIHE-----V--MEQQTISIAK---AGINTTLNARTSILAA 488 (721)
T ss_pred hcCCCCCeeEeccceEEEccCceEeehhhhhhhh-hhhHHHHH-----H--HHhhhhhhhh---hccccchhhhHHhhhh
Confidence 110 0111 12467889999999854 33321100 0 0000111000 1111111111235556
Q ss_pred cCCc-------------CcCCHHHHhcCCcceEEEe-CCCCHHHHHHHHHHhc
Q 041382 331 TNYK-------------DRIDPALLRAGRMDRHINL-SYCTFSTFKQLAANYL 369 (600)
Q Consensus 331 TN~~-------------~~Ld~aLlrpgRfd~~I~~-~~p~~e~r~~il~~~l 369 (600)
.|.. =.||+||++ |||...-+ ..|+.+.=..+++...
T Consensus 489 ANPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiT 539 (721)
T KOG0482|consen 489 ANPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHIT 539 (721)
T ss_pred cCccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhH
Confidence 5531 147999999 99976655 7787777666666544
No 456
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.97 E-value=0.0054 Score=58.46 Aligned_cols=22 Identities=32% Similarity=0.776 Sum_probs=20.0
Q ss_pred eeeeCCCCCCHHHHHHHHHHHc
Q 041382 222 YLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l 243 (600)
++|.|+||+||||+++.+++.+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999999988
No 457
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.96 E-value=0.0096 Score=59.75 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=33.3
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHc----CCcEEEEecCc
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYM----NYDIYNLNLSV 254 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l----~~~~~~l~~~~ 254 (600)
|++++.-++|.||||+|||+++..+|... +.+++.+++..
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~ 52 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM 52 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 77777789999999999999999887654 77888887654
No 458
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=95.95 E-value=0.0061 Score=59.60 Aligned_cols=38 Identities=21% Similarity=0.292 Sum_probs=29.1
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHc-CCcEEEEecCcc
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYM-NYDIYNLNLSVV 255 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l-~~~~~~l~~~~~ 255 (600)
.|.-+++.|+||+|||+++..+...+ +..++.++...+
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~ 52 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEF 52 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGG
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHH
Confidence 45688999999999999999999988 777788876554
No 459
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.94 E-value=0.01 Score=58.33 Aligned_cols=36 Identities=14% Similarity=0.145 Sum_probs=27.9
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcC-CcEEEEecCcc
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMN-YDIYNLNLSVV 255 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~-~~~~~l~~~~~ 255 (600)
.-+.+.||+|||||||+++|++.++ ..+..++...+
T Consensus 7 ~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~ 43 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSY 43 (209)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcc
Confidence 4678999999999999999999983 34555555443
No 460
>PRK04328 hypothetical protein; Provisional
Probab=95.94 E-value=0.0097 Score=60.41 Aligned_cols=40 Identities=30% Similarity=0.238 Sum_probs=31.6
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHH---cCCcEEEEecCc
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANY---MNYDIYNLNLSV 254 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~---l~~~~~~l~~~~ 254 (600)
|+|.+..+|++||||||||+|+..++.. -|.+.+.++...
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee 61 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE 61 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC
Confidence 6777888999999999999998876543 366777777644
No 461
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=95.94 E-value=0.0068 Score=59.21 Aligned_cols=31 Identities=23% Similarity=0.192 Sum_probs=27.4
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
-+.++|++|+|||++++.+++.+|.++++.|
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i~~D 33 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPILDAD 33 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEeeCc
Confidence 4789999999999999999998898887654
No 462
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.92 E-value=0.025 Score=57.71 Aligned_cols=108 Identities=17% Similarity=0.149 Sum_probs=62.5
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHc---------CCcEEEEecCccCChhHHHHHHhh------------------
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYM---------NYDIYNLNLSVVTSDSSLEYLLLH------------------ 267 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l---------~~~~~~l~~~~~~~~~~l~~~~~~------------------ 267 (600)
|++.+.-+=|+||||||||-|+-.+|-.. +..++++|...-.+..++..+...
T Consensus 34 Gi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~ 113 (256)
T PF08423_consen 34 GIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVF 113 (256)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-S
T ss_pred CCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecC
Confidence 44443333499999999999998887543 345888886654333333222211
Q ss_pred -----------------CCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEe
Q 041382 268 -----------------VPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFT 330 (600)
Q Consensus 268 -----------------~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~T 330 (600)
..+-.+|+||-|-.++.. ...+. +........+..+++.|..+....+ +.||.|
T Consensus 114 ~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalfr~-e~~~~------~~~~~R~~~L~~~~~~L~~lA~~~~--iaVvvT 184 (256)
T PF08423_consen 114 DLEELLELLEQLPKLLSESKIKLIVIDSIAALFRS-EFSGR------GDLAERQRMLARLARILKRLARKYN--IAVVVT 184 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHHHH-HSGST------TTHHHHHHHHHHHHHHHHHHHHHTT---EEEEE
T ss_pred CHHHHHHHHHHHHhhccccceEEEEecchHHHHHH-HHccc------hhhHHHHHHHHHHHHHHHHHHHhCC--ceEEee
Confidence 123469999999998752 11110 1112345677777777777765544 555544
Q ss_pred c
Q 041382 331 T 331 (600)
Q Consensus 331 T 331 (600)
.
T Consensus 185 N 185 (256)
T PF08423_consen 185 N 185 (256)
T ss_dssp E
T ss_pred c
Confidence 3
No 463
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.91 E-value=0.023 Score=63.26 Aligned_cols=85 Identities=21% Similarity=0.315 Sum_probs=53.7
Q ss_pred CCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcc-eeeeCCCCCCHHHHHHHHHHHcC---CcEEEEec----
Q 041382 181 PMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRG-YLLYGPPGTGKSSLIAAMANYMN---YDIYNLNL---- 252 (600)
Q Consensus 181 p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg-iLL~GppGtGKTsla~alA~~l~---~~~~~l~~---- 252 (600)
+.+++++...+++.+.+...+. .++| +|+.||+|+||||+..++.++++ .+++.+.-
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~---------------~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIR---------------RPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHh---------------cCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 4578888888877766655442 1235 68999999999999998888774 34555421
Q ss_pred --CccC-----C--hhHHHHHHhhC--CCcceeeecchh
Q 041382 253 --SVVT-----S--DSSLEYLLLHV--PNRSILVVEDID 280 (600)
Q Consensus 253 --~~~~-----~--~~~l~~~~~~~--~~~sIL~iDeiD 280 (600)
..+. . ...+...+... ..|-||++.||.
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR 321 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR 321 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 1110 1 11122222222 479999999984
No 464
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.91 E-value=0.0058 Score=61.63 Aligned_cols=29 Identities=31% Similarity=0.807 Sum_probs=22.0
Q ss_pred eeCCCCCCHHHHHHHHHHHc---CCcEEEEec
Q 041382 224 LYGPPGTGKSSLIAAMANYM---NYDIYNLNL 252 (600)
Q Consensus 224 L~GppGtGKTsla~alA~~l---~~~~~~l~~ 252 (600)
+.||||+||||+++++.+.+ +++++.+|+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNL 32 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNL 32 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEc
Confidence 36999999999999999987 566666664
No 465
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.90 E-value=0.0086 Score=57.64 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=27.9
Q ss_pred eeeeCCCCCCHHHHHHHHHHHcC---CcEEEEecCccC
Q 041382 222 YLLYGPPGTGKSSLIAAMANYMN---YDIYNLNLSVVT 256 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l~---~~~~~l~~~~~~ 256 (600)
+.+.|+||||||++++.++..++ .++..+++.++.
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~ 39 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY 39 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence 57899999999999999999873 556666655544
No 466
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.90 E-value=0.016 Score=55.72 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=27.0
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT 256 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~ 256 (600)
-+.+.||+|+||||+++++++.++.. .++...+.
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l~~~--~i~gd~~~ 38 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFSAK--FIDGDDLH 38 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCE--EECCcccC
Confidence 57899999999999999999998764 34444443
No 467
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.89 E-value=0.0098 Score=56.53 Aligned_cols=34 Identities=26% Similarity=0.403 Sum_probs=28.5
Q ss_pred eeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCcc
Q 041382 222 YLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVV 255 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~ 255 (600)
+++.||||+|||+++..+|..+ +..+..+++...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 6889999999999999999876 667777877654
No 468
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.88 E-value=0.011 Score=58.95 Aligned_cols=38 Identities=21% Similarity=0.145 Sum_probs=29.6
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEec
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNL 252 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~ 252 (600)
|++.+..++++||||||||+++..+|... +.+++.++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 67777789999999999999999876532 556666664
No 469
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.88 E-value=0.0081 Score=58.69 Aligned_cols=27 Identities=33% Similarity=0.434 Sum_probs=24.1
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
++.-+.|.||+|+|||++++.+++.+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 445789999999999999999999876
No 470
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=95.87 E-value=0.033 Score=52.55 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=20.5
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHc
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l 243 (600)
+..++.||.|+|||++.++++-.+
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~ 45 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLAL 45 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999999986543
No 471
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.84 E-value=0.012 Score=58.90 Aligned_cols=37 Identities=27% Similarity=0.358 Sum_probs=27.0
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHH-Hc--CCcEEEEe
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMAN-YM--NYDIYNLN 251 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~-~l--~~~~~~l~ 251 (600)
|++.+.-+++.||||||||+++..++. .+ |...+.++
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 567777899999999999999754444 32 45555555
No 472
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.84 E-value=0.0078 Score=58.39 Aligned_cols=30 Identities=17% Similarity=0.289 Sum_probs=24.1
Q ss_pred eeeeCCCCCCHHHHHHHHHHHc-CCcEEEEe
Q 041382 222 YLLYGPPGTGKSSLIAAMANYM-NYDIYNLN 251 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l-~~~~~~l~ 251 (600)
+.+.|+|||||||+|+.++..+ +..++.+|
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i~~D 32 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVIHQD 32 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEEccc
Confidence 5678999999999999999998 44444443
No 473
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.84 E-value=0.0092 Score=46.96 Aligned_cols=23 Identities=39% Similarity=0.696 Sum_probs=20.7
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHc
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l 243 (600)
..+|+||.|+||||+..|+.-.+
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999997765
No 474
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.84 E-value=0.0071 Score=58.48 Aligned_cols=26 Identities=27% Similarity=0.678 Sum_probs=23.3
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
+..+++.||+|+||||+++++++.+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 45799999999999999999999764
No 475
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.83 E-value=0.025 Score=55.62 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=19.9
Q ss_pred cceeeeCCCCCCHHHHHHHHHH
Q 041382 220 RGYLLYGPPGTGKSSLIAAMAN 241 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~ 241 (600)
+-++|.||.|+|||++.+.++.
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999974
No 476
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.81 E-value=0.1 Score=52.42 Aligned_cols=21 Identities=48% Similarity=0.561 Sum_probs=18.7
Q ss_pred eeeeCCCCCCHHHHHHHHHHH
Q 041382 222 YLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~ 242 (600)
-+|+||||+|||+|+-.+|-.
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 479999999999999988864
No 477
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.81 E-value=0.04 Score=59.04 Aligned_cols=43 Identities=28% Similarity=0.359 Sum_probs=29.4
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcC-------CcEEEEecCccCChhHH
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMN-------YDIYNLNLSVVTSDSSL 261 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~-------~~~~~l~~~~~~~~~~l 261 (600)
++-+.|.||.|+||||...-+|..+. .-++.+|.--+.....+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQL 252 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQL 252 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHH
Confidence 55678999999999998888887653 24555555444433333
No 478
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.80 E-value=0.011 Score=57.47 Aligned_cols=34 Identities=12% Similarity=0.237 Sum_probs=25.9
Q ss_pred eeeeCCCCCCHHHHHHHHHHHcC-CcEEEEecCcc
Q 041382 222 YLLYGPPGTGKSSLIAAMANYMN-YDIYNLNLSVV 255 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l~-~~~~~l~~~~~ 255 (600)
+.|.||+|+||||+++++++.++ ..+..+++..+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~ 36 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSY 36 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccc
Confidence 56899999999999999999873 34555554443
No 479
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.79 E-value=0.022 Score=54.90 Aligned_cols=23 Identities=39% Similarity=0.700 Sum_probs=20.3
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHc
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l 243 (600)
-.+++||||+|||+++..+|..+
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~ 56 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAAL 56 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 37899999999999999988855
No 480
>PRK06761 hypothetical protein; Provisional
Probab=95.78 E-value=0.0092 Score=61.51 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=27.7
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCcEEEEec
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNL 252 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~ 252 (600)
+-+++.||||+||||+++.++..++...+.++.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~ 36 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVEL 36 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEE
Confidence 358899999999999999999999766555553
No 481
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.78 E-value=0.013 Score=58.20 Aligned_cols=39 Identities=18% Similarity=0.146 Sum_probs=30.9
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecC
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLS 253 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~ 253 (600)
|++.+..++++|+||+|||+++..+|... +.+++.++..
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 67777789999999999999998887542 6667666654
No 482
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=95.78 E-value=0.021 Score=62.45 Aligned_cols=29 Identities=31% Similarity=0.345 Sum_probs=26.5
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHcCCc
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYMNYD 246 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l~~~ 246 (600)
.|.-++++|+||||||+++..+|..++..
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~ 282 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLGIT 282 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 36688999999999999999999999985
No 483
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=95.78 E-value=0.0072 Score=57.24 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=22.2
Q ss_pred eCCCCCCHHHHHHHHHHHcCCcEEEE
Q 041382 225 YGPPGTGKSSLIAAMANYMNYDIYNL 250 (600)
Q Consensus 225 ~GppGtGKTsla~alA~~l~~~~~~l 250 (600)
.|||||||||+++++|..++..++.-
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~ 26 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDG 26 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeC
Confidence 49999999999999999998655543
No 484
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.78 E-value=0.01 Score=58.34 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=22.0
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCC
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNY 245 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~ 245 (600)
-+.+.||+|+||||++++|++.++.
T Consensus 8 vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 8 IIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4568999999999999999998863
No 485
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=95.74 E-value=0.079 Score=60.26 Aligned_cols=85 Identities=20% Similarity=0.269 Sum_probs=53.0
Q ss_pred CCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC---cEEEEec------
Q 041382 182 MTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY---DIYNLNL------ 252 (600)
Q Consensus 182 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~---~~~~l~~------ 252 (600)
.+++++.+.++..+.+.+.+.. +.+.+|+.||+|+||||+..++.++++. +++.+.-
T Consensus 293 ~~l~~lg~~~~~~~~l~~~~~~--------------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~~ 358 (564)
T TIGR02538 293 LDIDKLGFEPDQKALFLEAIHK--------------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINL 358 (564)
T ss_pred CCHHHcCCCHHHHHHHHHHHHh--------------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceecC
Confidence 4688888888877777655421 1234689999999999999988888742 3444321
Q ss_pred CccC-------ChhHHHHHHhhC--CCcceeeecchh
Q 041382 253 SVVT-------SDSSLEYLLLHV--PNRSILVVEDID 280 (600)
Q Consensus 253 ~~~~-------~~~~l~~~~~~~--~~~sIL~iDeiD 280 (600)
..+. ....+...+... ..|-||++.||.
T Consensus 359 ~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiR 395 (564)
T TIGR02538 359 PGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIR 395 (564)
T ss_pred CCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCC
Confidence 1110 011233333332 368899999884
No 486
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.73 E-value=0.012 Score=62.03 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=23.0
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHc
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l 243 (600)
+.++|+.||+|+||||++++++.++
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999999876
No 487
>PRK08356 hypothetical protein; Provisional
Probab=95.73 E-value=0.01 Score=57.83 Aligned_cols=31 Identities=13% Similarity=0.086 Sum_probs=24.4
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCc
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSV 254 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~l~~~~ 254 (600)
-++|.||||+||||+++.++. .|++. +++++
T Consensus 7 ~i~~~G~~gsGK~t~a~~l~~-~g~~~--is~~~ 37 (195)
T PRK08356 7 IVGVVGKIAAGKTTVAKFFEE-KGFCR--VSCSD 37 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcE--EeCCC
Confidence 478999999999999999964 67664 44444
No 488
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.72 E-value=0.0086 Score=58.55 Aligned_cols=34 Identities=26% Similarity=0.426 Sum_probs=25.3
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEec
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNL 252 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~ 252 (600)
|+-++|.||+|+||||.+.-+|.++ +..+--+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~ 37 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISA 37 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecC
Confidence 4578999999999999999999876 344444443
No 489
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.72 E-value=0.16 Score=50.79 Aligned_cols=27 Identities=30% Similarity=0.504 Sum_probs=23.2
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcCC
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMNY 245 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~~ 245 (600)
+.-+-|.||+|+|||||++.+++.+..
T Consensus 33 ~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 33 RTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 446778999999999999999998743
No 490
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=95.71 E-value=0.011 Score=57.76 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=26.6
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
-+.|+|++||||||+++.++. +|+++++.|
T Consensus 4 ~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D 33 (194)
T PRK00081 4 IIGLTGGIGSGKSTVANLFAE-LGAPVIDAD 33 (194)
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCCEEEEec
Confidence 588999999999999999998 888877665
No 491
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=95.68 E-value=0.01 Score=61.98 Aligned_cols=36 Identities=25% Similarity=0.431 Sum_probs=31.1
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCcc
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVV 255 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~ 255 (600)
.-+++.||+|||||+++..+|..++..++..|.-.+
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qv 40 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNGEIISADSMQV 40 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccce
Confidence 468899999999999999999999988887775444
No 492
>PRK14974 cell division protein FtsY; Provisional
Probab=95.68 E-value=0.025 Score=59.95 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=27.4
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecC
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLS 253 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~ 253 (600)
++-++|.||||+||||+++.+|..+ +..+..+++.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 4578999999999999999999876 4455555543
No 493
>PHA00012 I assembly protein
Probab=95.68 E-value=0.044 Score=57.08 Aligned_cols=58 Identities=9% Similarity=0.035 Sum_probs=37.9
Q ss_pred CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHh
Q 041382 269 PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLR 343 (600)
Q Consensus 269 ~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlr 343 (600)
+..+|++|||+...++ .|..++. .. ....+.+.... ..+.-+|++|.++..+|..++.
T Consensus 80 p~gsLlVlDEaq~~fp--~R~~~sk--------~p-~~vie~l~~hR------h~G~DvilITQ~ps~VDs~IR~ 137 (361)
T PHA00012 80 SKNGLLVLDECGTWFN--SRSWNDK--------ER-QPVIDWFLHAR------KLGWDIIFIIQDISIMDKQARE 137 (361)
T ss_pred CCCcEEEEECcccccC--CCCcCcC--------Cc-HHHHHHHHHhc------cCCceEEEEcCCHHHHhHHHHH
Confidence 4678999999999886 5543321 11 22233333322 2346788999999999999874
No 494
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.68 E-value=0.016 Score=56.74 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=19.6
Q ss_pred cceeeeCCCCCCHHHHHHHHH
Q 041382 220 RGYLLYGPPGTGKSSLIAAMA 240 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA 240 (600)
+.++|.||.|+|||++.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 469999999999999999998
No 495
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=95.68 E-value=0.012 Score=61.15 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=26.2
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHcCCc
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYMNYD 246 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l~~~ 246 (600)
.|-.+++.||+|||||++|..+|..++.+
T Consensus 91 ~p~iIlI~G~sgsGKStlA~~La~~l~~~ 119 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAFELASRLGIR 119 (301)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 34578999999999999999999999877
No 496
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.67 E-value=0.013 Score=65.34 Aligned_cols=39 Identities=21% Similarity=0.218 Sum_probs=31.9
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHH----cCCcEEEEecC
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANY----MNYDIYNLNLS 253 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~----l~~~~~~l~~~ 253 (600)
|++.++.+|+.||||||||+++..++.. .|.+.+.+...
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 6888899999999999999999987432 26787777764
No 497
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.66 E-value=0.021 Score=62.22 Aligned_cols=38 Identities=16% Similarity=0.307 Sum_probs=31.2
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccC
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVT 256 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~ 256 (600)
|.-++|.||+|+||||++..+|.++ |..+..+++....
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 4568899999999999999999887 6677777765544
No 498
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.65 E-value=0.019 Score=61.30 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=22.1
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHc
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l 243 (600)
.-+++.|.||||||.++-.+|..+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh
Confidence 357899999999999999999988
No 499
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=95.64 E-value=0.025 Score=55.32 Aligned_cols=33 Identities=24% Similarity=0.513 Sum_probs=24.3
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHc-------CCcEEEEecC
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYM-------NYDIYNLNLS 253 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l-------~~~~~~l~~~ 253 (600)
++|+.|++|+|||+++++++..+ ...++.+|..
T Consensus 40 h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k 79 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPK 79 (205)
T ss_dssp SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TT
T ss_pred eEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCC
Confidence 79999999999999999887755 3457777755
No 500
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.64 E-value=0.018 Score=61.58 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=22.4
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHc
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l 243 (600)
...+++.||+|+||||+++++++++
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468899999999999999999987
Done!