Query 041382
Match_columns 600
No_of_seqs 548 out of 3050
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 10:46:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041382.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041382hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 1E-40 3.5E-45 354.1 21.5 234 177-418 140-389 (405)
2 4b4t_I 26S protease regulatory 100.0 2.7E-40 9.3E-45 351.7 20.2 235 177-419 174-424 (437)
3 4b4t_K 26S protease regulatory 100.0 3.5E-39 1.2E-43 346.8 23.4 215 177-399 164-388 (428)
4 4b4t_L 26S protease subunit RP 100.0 1.7E-39 5.9E-44 349.8 20.5 233 179-419 175-423 (437)
5 4b4t_M 26S protease regulatory 100.0 1.3E-39 4.3E-44 350.5 19.4 216 176-399 172-396 (434)
6 4b4t_H 26S protease regulatory 100.0 8.9E-39 3.1E-43 343.1 22.6 215 177-399 201-424 (467)
7 3cf2_A TER ATPase, transitiona 100.0 3.6E-37 1.2E-41 353.1 13.0 330 180-533 199-547 (806)
8 3cf2_A TER ATPase, transitiona 100.0 1.3E-34 4.3E-39 332.0 10.5 226 179-417 471-705 (806)
9 3cf0_A Transitional endoplasmi 100.0 8.2E-29 2.8E-33 256.3 23.7 225 178-415 8-241 (301)
10 2x8a_A Nuclear valosin-contain 100.0 8.5E-29 2.9E-33 252.9 21.7 219 180-414 5-237 (274)
11 1xwi_A SKD1 protein; VPS4B, AA 100.0 3.4E-27 1.2E-31 246.5 25.3 220 179-416 6-236 (322)
12 3h4m_A Proteasome-activating n 100.0 2.8E-27 9.5E-32 241.8 22.2 215 176-398 8-231 (285)
13 2ce7_A Cell division protein F 100.0 2.8E-27 9.5E-32 258.3 22.3 212 179-399 10-230 (476)
14 1lv7_A FTSH; alpha/beta domain 99.9 7.4E-27 2.5E-31 235.5 22.2 214 177-399 4-226 (257)
15 3hu3_A Transitional endoplasmi 99.9 2.5E-28 8.5E-33 268.3 9.8 209 180-399 199-416 (489)
16 3eie_A Vacuolar protein sortin 99.9 1E-26 3.5E-31 242.8 20.9 222 177-416 10-241 (322)
17 2qz4_A Paraplegin; AAA+, SPG7, 99.9 1.6E-26 5.6E-31 232.6 19.7 212 180-399 1-223 (262)
18 2qp9_X Vacuolar protein sortin 99.9 3.3E-26 1.1E-30 242.2 20.6 220 177-414 43-272 (355)
19 2zan_A Vacuolar protein sortin 99.9 1.5E-25 5.2E-30 244.0 21.8 222 177-416 126-358 (444)
20 2dhr_A FTSH; AAA+ protein, hex 99.9 3.1E-25 1.1E-29 243.4 19.3 231 180-419 26-272 (499)
21 1ixz_A ATP-dependent metallopr 99.9 2.8E-24 9.7E-29 216.2 21.6 214 177-399 8-230 (254)
22 2r62_A Cell division protease 99.9 3.3E-26 1.1E-30 231.9 7.1 213 179-398 5-226 (268)
23 3vfd_A Spastin; ATPase, microt 99.9 3.6E-24 1.2E-28 229.2 21.0 211 177-399 107-327 (389)
24 3d8b_A Fidgetin-like protein 1 99.9 5.6E-24 1.9E-28 225.3 20.8 210 178-399 77-296 (357)
25 3b9p_A CG5977-PA, isoform A; A 99.9 9.9E-24 3.4E-28 216.8 20.1 211 177-399 13-234 (297)
26 1iy2_A ATP-dependent metallopr 99.9 3.9E-23 1.3E-27 210.9 22.1 214 177-399 32-254 (278)
27 1ypw_A Transitional endoplasmi 99.9 1.6E-26 5.4E-31 268.5 -5.3 223 179-414 471-702 (806)
28 1ypw_A Transitional endoplasmi 99.9 2.4E-24 8.3E-29 250.2 10.8 301 179-502 198-510 (806)
29 3t15_A Ribulose bisphosphate c 99.9 9.5E-24 3.2E-28 217.5 14.1 171 213-395 30-221 (293)
30 3pfi_A Holliday junction ATP-d 99.8 3E-18 1E-22 179.1 23.2 172 169-374 17-202 (338)
31 2c9o_A RUVB-like 1; hexameric 99.8 2.7E-20 9.2E-25 203.3 4.4 178 180-367 32-237 (456)
32 1g41_A Heat shock protein HSLU 99.8 2.7E-19 9.3E-24 192.8 6.0 163 186-366 16-189 (444)
33 3syl_A Protein CBBX; photosynt 99.8 1.9E-17 6.5E-22 170.6 19.0 174 186-378 32-226 (309)
34 1hqc_A RUVB; extended AAA-ATPa 99.7 4.5E-17 1.6E-21 168.7 20.0 166 177-372 4-184 (324)
35 1ofh_A ATP-dependent HSL prote 99.7 1.5E-16 5E-21 163.4 18.7 172 186-367 16-213 (310)
36 3pxg_A Negative regulator of g 99.7 3.7E-18 1.3E-22 186.9 7.2 268 178-522 173-468 (468)
37 3u61_B DNA polymerase accessor 99.7 1.3E-16 4.5E-21 165.7 16.9 196 169-415 14-220 (324)
38 1d2n_A N-ethylmaleimide-sensit 99.7 1.2E-15 4.2E-20 154.6 20.4 167 185-367 33-210 (272)
39 2chg_A Replication factor C sm 99.7 6.7E-16 2.3E-20 149.3 17.3 155 177-371 9-176 (226)
40 3pxi_A Negative regulator of g 99.7 3.2E-17 1.1E-21 189.8 9.2 291 178-545 173-491 (758)
41 3uk6_A RUVB-like 2; hexameric 99.7 7.4E-16 2.5E-20 162.6 17.9 185 179-398 37-303 (368)
42 3hws_A ATP-dependent CLP prote 99.7 2.9E-17 9.8E-22 173.9 6.9 173 187-367 17-267 (363)
43 1jbk_A CLPB protein; beta barr 99.6 1.4E-16 4.7E-21 150.6 8.0 153 179-365 16-194 (195)
44 1njg_A DNA polymerase III subu 99.6 7E-15 2.4E-19 143.8 20.5 157 177-372 15-201 (250)
45 1sxj_A Activator 1 95 kDa subu 99.6 5.3E-16 1.8E-20 171.9 13.1 174 169-371 27-224 (516)
46 3m6a_A ATP-dependent protease 99.6 6.5E-16 2.2E-20 172.0 13.2 160 184-369 80-266 (543)
47 1qvr_A CLPB protein; coiled co 99.6 2.8E-15 9.7E-20 175.6 16.2 158 179-370 164-346 (854)
48 2chq_A Replication factor C sm 99.6 2.1E-15 7.2E-20 155.2 13.2 156 177-372 9-177 (319)
49 1r6b_X CLPA protein; AAA+, N-t 99.6 7.1E-15 2.4E-19 170.1 17.5 159 179-370 180-363 (758)
50 4fcw_A Chaperone protein CLPB; 99.6 7.4E-15 2.5E-19 151.1 15.8 161 185-371 17-231 (311)
51 3pvs_A Replication-associated 99.6 7.2E-15 2.5E-19 159.7 15.1 152 177-371 18-180 (447)
52 2r44_A Uncharacterized protein 99.6 6.9E-15 2.3E-19 153.3 14.3 154 181-371 23-200 (331)
53 1iqp_A RFCS; clamp loader, ext 99.6 1.7E-14 5.8E-19 148.9 16.6 160 169-372 13-185 (327)
54 1um8_A ATP-dependent CLP prote 99.6 3.9E-14 1.3E-18 150.4 19.6 174 186-367 22-284 (376)
55 1l8q_A Chromosomal replication 99.6 1.7E-14 5.7E-19 150.0 15.9 187 178-397 4-207 (324)
56 1sxj_D Activator 1 41 kDa subu 99.6 2.1E-14 7.3E-19 150.1 16.2 158 170-371 26-207 (353)
57 3bos_A Putative DNA replicatio 99.6 1.6E-14 5.6E-19 142.0 14.2 162 177-372 20-190 (242)
58 2v1u_A Cell division control p 99.6 2.7E-14 9.2E-19 150.7 16.6 161 182-370 16-215 (387)
59 1sxj_B Activator 1 37 kDa subu 99.6 2.8E-14 9.4E-19 147.1 15.7 154 177-370 13-180 (323)
60 1jr3_A DNA polymerase III subu 99.6 1.2E-13 4.1E-18 145.5 19.9 156 177-371 8-193 (373)
61 1in4_A RUVB, holliday junction 99.6 2.7E-13 9.3E-18 141.8 22.4 165 177-371 17-195 (334)
62 2p65_A Hypothetical protein PF 99.6 9.6E-15 3.3E-19 137.7 10.0 146 179-357 16-187 (187)
63 2qby_B CDC6 homolog 3, cell di 99.5 1.1E-13 3.8E-18 146.4 18.3 151 185-370 20-211 (384)
64 1g8p_A Magnesium-chelatase 38 99.5 4.6E-14 1.6E-18 147.5 14.8 157 178-369 17-232 (350)
65 3te6_A Regulatory protein SIR3 99.5 9.4E-14 3.2E-18 143.8 16.6 151 187-371 22-213 (318)
66 3pxi_A Negative regulator of g 99.5 5.5E-14 1.9E-18 162.7 16.4 159 185-370 491-676 (758)
67 2z4s_A Chromosomal replication 99.5 1.4E-13 4.8E-18 149.4 16.6 188 177-398 97-306 (440)
68 1sxj_E Activator 1 40 kDa subu 99.5 2.2E-13 7.7E-18 142.7 17.2 156 177-371 6-208 (354)
69 1r6b_X CLPA protein; AAA+, N-t 99.5 2E-13 6.8E-18 158.0 17.7 154 186-370 459-667 (758)
70 1fnn_A CDC6P, cell division co 99.5 7.5E-13 2.6E-17 139.9 20.5 159 183-370 15-207 (389)
71 2qby_A CDC6 homolog 1, cell di 99.5 2.8E-13 9.6E-18 142.6 17.0 162 179-370 14-211 (386)
72 2bjv_A PSP operon transcriptio 99.5 2.1E-13 7.1E-18 137.5 13.5 155 182-369 3-194 (265)
73 1sxj_C Activator 1 40 kDa subu 99.5 2.7E-13 9.3E-18 141.9 14.6 157 170-370 14-183 (340)
74 3n70_A Transport activator; si 99.4 3.7E-13 1.3E-17 123.5 9.4 132 186-356 2-144 (145)
75 1a5t_A Delta prime, HOLB; zinc 99.4 1.2E-11 4.2E-16 129.2 19.1 148 218-396 23-203 (334)
76 1qvr_A CLPB protein; coiled co 99.4 4E-12 1.4E-16 149.0 15.4 156 184-370 557-771 (854)
77 1ojl_A Transcriptional regulat 99.3 9E-12 3.1E-16 128.6 12.9 152 186-370 3-191 (304)
78 3co5_A Putative two-component 99.3 1.5E-12 5.3E-17 119.1 5.6 132 186-356 5-142 (143)
79 3nbx_X ATPase RAVA; AAA+ ATPas 99.3 1E-11 3.5E-16 136.3 12.4 146 186-370 23-197 (500)
80 2gno_A DNA polymerase III, gam 99.3 2.8E-11 9.4E-16 125.0 13.7 121 220-369 19-152 (305)
81 3f9v_A Minichromosome maintena 99.2 1.5E-12 5.1E-17 146.3 1.3 128 221-372 329-493 (595)
82 4akg_A Glutathione S-transfera 99.2 3.6E-11 1.2E-15 152.7 13.3 137 219-370 1267-1432(2695)
83 1w5s_A Origin recognition comp 99.2 3.3E-10 1.1E-14 120.6 17.5 164 183-370 20-229 (412)
84 3ec2_A DNA replication protein 99.2 2.2E-11 7.4E-16 115.3 6.2 98 179-282 4-112 (180)
85 1svm_A Large T antigen; AAA+ f 99.0 2E-10 6.7E-15 121.8 5.9 121 214-355 164-284 (377)
86 2w58_A DNAI, primosome compone 99.0 5.5E-10 1.9E-14 107.4 7.2 97 180-282 20-127 (202)
87 3cmw_A Protein RECA, recombina 98.9 6.9E-10 2.3E-14 135.7 7.8 147 182-334 1017-1218(1706)
88 1tue_A Replication protein E1; 98.9 2.4E-09 8.2E-14 103.2 10.0 115 215-357 54-180 (212)
89 3k1j_A LON protease, ATP-depen 98.9 3.5E-09 1.2E-13 119.3 11.9 54 177-245 33-86 (604)
90 2kjq_A DNAA-related protein; s 98.8 5.6E-09 1.9E-13 96.2 7.8 102 218-350 35-142 (149)
91 2qgz_A Helicase loader, putati 98.8 2E-09 6.9E-14 111.1 5.4 97 180-282 119-226 (308)
92 2fna_A Conserved hypothetical 98.7 1.9E-07 6.4E-12 96.7 17.2 177 182-397 10-249 (357)
93 2r2a_A Uncharacterized protein 98.7 2.2E-08 7.6E-13 96.7 9.1 121 220-360 6-157 (199)
94 2vhj_A Ntpase P4, P4; non- hyd 98.7 8.3E-09 2.8E-13 106.2 4.0 116 215-342 119-243 (331)
95 4akg_A Glutathione S-transfera 98.7 7.1E-08 2.4E-12 123.0 12.9 126 220-365 646-789 (2695)
96 3vkg_A Dynein heavy chain, cyt 98.6 2.6E-07 8.8E-12 118.6 17.3 134 219-369 1304-1469(3245)
97 2qen_A Walker-type ATPase; unk 98.6 1.5E-06 5.1E-11 89.7 19.2 153 181-370 8-217 (350)
98 1u0j_A DNA replication protein 98.6 2.2E-07 7.4E-12 93.4 12.0 59 217-282 102-160 (267)
99 3dzd_A Transcriptional regulat 98.5 1.5E-06 5.3E-11 91.7 15.0 152 186-370 130-317 (368)
100 1ny5_A Transcriptional regulat 98.5 1.6E-06 5.4E-11 92.3 14.8 154 184-370 136-326 (387)
101 3f8t_A Predicted ATPase involv 98.4 3.7E-07 1.3E-11 98.2 6.7 141 187-360 215-385 (506)
102 3vkg_A Dynein heavy chain, cyt 98.3 1.9E-06 6.6E-11 110.7 13.1 123 220-365 605-749 (3245)
103 3cmu_A Protein RECA, recombina 98.1 3.2E-06 1.1E-10 104.9 9.1 112 216-333 1424-1562(2050)
104 1ye8_A Protein THEP1, hypothet 97.9 4.4E-05 1.5E-09 72.0 9.5 27 221-247 2-28 (178)
105 1jr3_D DNA polymerase III, del 97.8 5.5E-05 1.9E-09 78.6 9.3 125 219-373 18-159 (343)
106 2cvh_A DNA repair and recombin 97.7 0.00016 5.6E-09 69.3 11.3 40 215-254 16-55 (220)
107 1z6t_A APAF-1, apoptotic prote 97.7 0.00053 1.8E-08 76.3 16.3 50 181-241 120-169 (591)
108 1n0w_A DNA repair protein RAD5 97.5 0.00019 6.6E-09 70.0 8.5 40 215-254 20-68 (243)
109 3hr8_A Protein RECA; alpha and 97.5 0.00022 7.5E-09 74.6 9.3 105 215-322 57-188 (356)
110 1qhx_A CPT, protein (chloramph 97.5 7.8E-05 2.7E-09 69.4 5.0 33 220-252 4-36 (178)
111 3trf_A Shikimate kinase, SK; a 97.5 4.9E-05 1.7E-09 71.3 3.6 33 219-251 5-37 (185)
112 2z43_A DNA repair and recombin 97.5 0.00014 4.9E-09 75.1 7.3 40 215-254 103-151 (324)
113 2w0m_A SSO2452; RECA, SSPF, un 97.5 0.00047 1.6E-08 66.4 10.4 37 215-251 19-58 (235)
114 3upu_A ATP-dependent DNA helic 97.4 0.0007 2.4E-08 73.3 12.5 63 177-252 16-82 (459)
115 2zr9_A Protein RECA, recombina 97.4 0.0002 6.8E-09 74.9 7.8 69 215-283 57-152 (349)
116 3vaa_A Shikimate kinase, SK; s 97.4 6.8E-05 2.3E-09 71.6 3.8 34 218-251 24-57 (199)
117 2rhm_A Putative kinase; P-loop 97.4 6.7E-05 2.3E-09 70.6 3.4 34 217-250 3-36 (193)
118 2orw_A Thymidine kinase; TMTK, 97.4 0.00016 5.5E-09 68.5 5.5 63 220-282 4-88 (184)
119 1xp8_A RECA protein, recombina 97.4 0.00046 1.6E-08 72.5 9.5 69 215-283 70-165 (366)
120 1u94_A RECA protein, recombina 97.3 0.00036 1.2E-08 73.2 7.8 69 215-283 59-154 (356)
121 3kb2_A SPBC2 prophage-derived 97.3 0.00014 4.6E-09 67.0 4.0 31 221-251 3-33 (173)
122 1v5w_A DMC1, meiotic recombina 97.3 0.00051 1.7E-08 71.5 8.8 40 215-254 118-166 (343)
123 3cmu_A Protein RECA, recombina 97.3 0.00047 1.6E-08 85.8 9.7 70 215-284 1077-1173(2050)
124 2iyv_A Shikimate kinase, SK; t 97.3 0.00013 4.5E-09 68.3 3.6 31 221-251 4-34 (184)
125 1via_A Shikimate kinase; struc 97.3 0.00012 4.1E-09 68.1 3.3 31 221-251 6-36 (175)
126 3iij_A Coilin-interacting nucl 97.3 0.00013 4.3E-09 68.2 3.4 33 219-251 11-43 (180)
127 3sfz_A APAF-1, apoptotic pepti 97.3 0.0016 5.4E-08 78.4 13.9 145 180-372 119-302 (1249)
128 1pzn_A RAD51, DNA repair and r 97.3 0.0005 1.7E-08 71.8 8.3 41 214-254 126-175 (349)
129 1zuh_A Shikimate kinase; alpha 97.2 0.00014 4.9E-09 67.1 3.5 32 220-251 8-39 (168)
130 1nlf_A Regulatory protein REPA 97.2 0.00067 2.3E-08 68.2 8.5 29 215-243 26-54 (279)
131 1y63_A LMAJ004144AAA protein; 97.2 0.00015 5.3E-09 68.2 3.5 33 219-251 10-43 (184)
132 1kag_A SKI, shikimate kinase I 97.2 0.00017 6E-09 66.6 3.7 30 220-249 5-34 (173)
133 2ehv_A Hypothetical protein PH 97.2 0.00087 3E-08 65.5 8.5 26 215-240 26-51 (251)
134 1gvn_B Zeta; postsegregational 97.1 0.00052 1.8E-08 69.7 6.8 35 218-252 32-66 (287)
135 2cdn_A Adenylate kinase; phosp 97.1 0.00023 8E-09 67.7 3.9 32 220-251 21-52 (201)
136 3io5_A Recombination and repai 97.1 0.00097 3.3E-08 68.4 8.6 117 215-336 25-173 (333)
137 1e6c_A Shikimate kinase; phosp 97.1 0.0002 6.8E-09 66.1 3.2 31 221-251 4-34 (173)
138 2ze6_A Isopentenyl transferase 97.1 0.00026 8.8E-09 70.5 4.1 32 221-252 3-34 (253)
139 1tev_A UMP-CMP kinase; ploop, 97.1 0.00022 7.6E-09 66.9 3.3 31 220-250 4-34 (196)
140 3lw7_A Adenylate kinase relate 97.1 0.00023 8E-09 65.2 3.3 29 221-250 3-31 (179)
141 3be4_A Adenylate kinase; malar 97.1 0.00022 7.6E-09 69.0 3.0 31 220-250 6-36 (217)
142 2i1q_A DNA repair and recombin 97.1 0.00062 2.1E-08 70.0 6.3 28 215-242 94-121 (322)
143 2c95_A Adenylate kinase 1; tra 97.0 0.00025 8.7E-09 66.7 3.1 32 220-251 10-41 (196)
144 2pt5_A Shikimate kinase, SK; a 97.0 0.00029 9.9E-09 64.7 3.4 31 221-251 2-32 (168)
145 1qf9_A UMP/CMP kinase, protein 97.0 0.00025 8.6E-09 66.4 3.1 33 219-251 6-38 (194)
146 1zp6_A Hypothetical protein AT 97.0 0.00026 9.1E-09 66.5 3.2 37 216-252 6-42 (191)
147 3t61_A Gluconokinase; PSI-biol 97.0 0.00034 1.2E-08 66.6 4.0 33 219-251 18-50 (202)
148 3cm0_A Adenylate kinase; ATP-b 97.0 0.00024 8.3E-09 66.4 2.7 30 221-250 6-35 (186)
149 1kht_A Adenylate kinase; phosp 97.0 0.00027 9.2E-09 66.2 2.9 25 220-244 4-28 (192)
150 3dl0_A Adenylate kinase; phosp 97.0 0.00034 1.2E-08 67.3 3.6 30 222-251 3-32 (216)
151 1zd8_A GTP:AMP phosphotransfer 97.0 0.00029 9.9E-09 68.6 3.0 32 219-250 7-38 (227)
152 1ly1_A Polynucleotide kinase; 97.0 0.0002 7E-09 66.3 1.9 28 220-247 3-31 (181)
153 1aky_A Adenylate kinase; ATP:A 97.0 0.00034 1.2E-08 67.6 3.5 31 220-250 5-35 (220)
154 2bwj_A Adenylate kinase 5; pho 97.0 0.0003 1E-08 66.4 2.9 33 219-251 12-44 (199)
155 2p5t_B PEZT; postsegregational 97.0 0.00069 2.4E-08 67.2 5.6 38 218-255 31-68 (253)
156 2a5y_B CED-4; apoptosis; HET: 97.0 0.015 5E-07 64.3 16.9 44 188-241 131-174 (549)
157 3fb4_A Adenylate kinase; psych 97.0 0.00037 1.3E-08 67.0 3.4 30 222-251 3-32 (216)
158 2pez_A Bifunctional 3'-phospho 96.9 0.00067 2.3E-08 63.2 4.8 34 219-252 5-41 (179)
159 1knq_A Gluconate kinase; ALFA/ 96.9 0.0005 1.7E-08 63.7 3.8 30 220-249 9-38 (175)
160 2vli_A Antibiotic resistance p 96.9 0.00041 1.4E-08 64.6 3.2 29 220-248 6-34 (183)
161 1ukz_A Uridylate kinase; trans 96.9 0.00047 1.6E-08 65.5 3.6 32 220-251 16-47 (203)
162 3umf_A Adenylate kinase; rossm 96.9 0.00056 1.9E-08 66.6 4.0 32 217-248 27-58 (217)
163 1ak2_A Adenylate kinase isoenz 96.9 0.00051 1.7E-08 67.2 3.7 31 220-250 17-47 (233)
164 1zak_A Adenylate kinase; ATP:A 96.8 0.00033 1.1E-08 67.9 2.0 31 219-249 5-35 (222)
165 4eun_A Thermoresistant glucoki 96.8 0.00081 2.8E-08 64.0 4.4 30 219-248 29-58 (200)
166 2pbr_A DTMP kinase, thymidylat 96.8 0.00089 3.1E-08 62.7 4.7 31 222-252 3-36 (195)
167 3tlx_A Adenylate kinase 2; str 96.8 0.0006 2.1E-08 67.3 3.5 34 218-251 28-61 (243)
168 3e1s_A Exodeoxyribonuclease V, 96.8 0.0023 8E-08 71.2 8.6 63 220-282 205-291 (574)
169 2r8r_A Sensor protein; KDPD, P 96.8 0.0041 1.4E-07 60.6 9.3 33 220-252 7-42 (228)
170 3lda_A DNA repair protein RAD5 96.8 0.0026 8.9E-08 67.6 8.5 40 215-254 174-222 (400)
171 1e4v_A Adenylate kinase; trans 96.8 0.00055 1.9E-08 65.9 2.9 29 222-250 3-31 (214)
172 3crm_A TRNA delta(2)-isopenten 96.8 0.00082 2.8E-08 69.2 4.2 36 219-254 5-40 (323)
173 3sr0_A Adenylate kinase; phosp 96.7 0.00087 3E-08 64.7 4.0 27 222-248 3-29 (206)
174 2bbw_A Adenylate kinase 4, AK4 96.7 0.001 3.5E-08 65.5 4.2 30 219-248 27-56 (246)
175 2xb4_A Adenylate kinase; ATP-b 96.6 0.0011 3.8E-08 64.4 4.1 29 222-250 3-31 (223)
176 2jaq_A Deoxyguanosine kinase; 96.6 0.0012 4E-08 62.4 3.9 28 221-248 2-29 (205)
177 2ga8_A Hypothetical 39.9 kDa p 96.6 0.00071 2.4E-08 70.5 2.5 51 190-249 4-54 (359)
178 1vt4_I APAF-1 related killer D 96.6 0.021 7.1E-07 67.2 14.9 55 188-254 131-191 (1221)
179 2v54_A DTMP kinase, thymidylat 96.6 0.0013 4.5E-08 62.3 4.2 34 220-253 5-39 (204)
180 2if2_A Dephospho-COA kinase; a 96.6 0.00083 2.8E-08 63.9 2.7 30 221-251 3-32 (204)
181 3uie_A Adenylyl-sulfate kinase 96.6 0.0017 6E-08 61.7 4.9 33 219-251 25-60 (200)
182 2iut_A DNA translocase FTSK; n 96.6 0.02 7E-07 63.1 14.0 74 272-366 345-420 (574)
183 2z0h_A DTMP kinase, thymidylat 96.6 0.0016 5.4E-08 61.2 4.5 31 222-252 3-36 (197)
184 1cke_A CK, MSSA, protein (cyti 96.5 0.0015 5.2E-08 63.0 4.3 29 221-249 7-35 (227)
185 2plr_A DTMP kinase, probable t 96.5 0.0027 9.1E-08 60.3 5.9 31 220-250 5-37 (213)
186 1nks_A Adenylate kinase; therm 96.5 0.00083 2.9E-08 62.8 2.3 31 221-251 3-36 (194)
187 3nwj_A ATSK2; P loop, shikimat 96.5 0.0011 3.7E-08 66.0 3.2 33 219-251 48-80 (250)
188 3ake_A Cytidylate kinase; CMP 96.5 0.0012 4.3E-08 62.5 3.4 31 221-251 4-34 (208)
189 3a4m_A L-seryl-tRNA(SEC) kinas 96.5 0.0018 6.2E-08 64.5 4.7 32 220-251 5-39 (260)
190 1jjv_A Dephospho-COA kinase; P 96.5 0.0012 4E-08 63.0 2.9 30 221-251 4-33 (206)
191 2grj_A Dephospho-COA kinase; T 96.5 0.0013 4.5E-08 62.6 3.2 31 221-251 14-44 (192)
192 3r20_A Cytidylate kinase; stru 96.4 0.0019 6.6E-08 63.5 4.3 31 220-250 10-40 (233)
193 1g5t_A COB(I)alamin adenosyltr 96.4 0.038 1.3E-06 52.6 13.2 109 220-354 29-178 (196)
194 2b8t_A Thymidine kinase; deoxy 96.4 0.014 4.7E-07 56.9 10.3 62 221-282 14-101 (223)
195 4a74_A DNA repair and recombin 96.4 0.0038 1.3E-07 60.0 6.1 29 215-243 21-49 (231)
196 2ius_A DNA translocase FTSK; n 96.4 0.027 9.2E-07 61.6 13.4 74 272-366 299-374 (512)
197 3jvv_A Twitching mobility prot 96.3 0.0043 1.5E-07 64.9 6.4 60 220-279 124-205 (356)
198 2wwf_A Thymidilate kinase, put 96.3 0.00093 3.2E-08 63.7 1.2 30 219-248 10-39 (212)
199 1uf9_A TT1252 protein; P-loop, 96.3 0.0017 5.9E-08 61.3 3.0 31 220-251 9-39 (203)
200 2h92_A Cytidylate kinase; ross 96.2 0.0023 8E-08 61.4 3.6 32 220-251 4-35 (219)
201 2qor_A Guanylate kinase; phosp 96.2 0.0028 9.6E-08 60.4 3.9 28 217-244 10-37 (204)
202 2yvu_A Probable adenylyl-sulfa 96.2 0.0045 1.5E-07 57.9 5.1 33 219-251 13-48 (186)
203 1vht_A Dephospho-COA kinase; s 96.1 0.0025 8.6E-08 61.3 3.3 31 220-251 5-35 (218)
204 2dr3_A UPF0273 protein PH0284; 96.1 0.0036 1.2E-07 60.8 4.5 40 215-254 19-61 (247)
205 1kgd_A CASK, peripheral plasma 96.1 0.0031 1.1E-07 59.0 3.8 26 219-244 5-30 (180)
206 4e22_A Cytidylate kinase; P-lo 96.1 0.0038 1.3E-07 61.8 4.7 30 220-249 28-57 (252)
207 3cmw_A Protein RECA, recombina 96.1 0.0085 2.9E-07 73.9 8.5 119 210-333 1419-1567(1706)
208 1nn5_A Similar to deoxythymidy 96.1 0.0014 4.8E-08 62.5 1.4 26 220-245 10-35 (215)
209 4b3f_X DNA-binding protein smu 96.1 0.0076 2.6E-07 68.0 7.5 58 181-253 182-242 (646)
210 3foz_A TRNA delta(2)-isopenten 96.1 0.0036 1.2E-07 64.0 4.2 37 219-255 10-46 (316)
211 3a8t_A Adenylate isopentenyltr 96.1 0.0024 8.1E-08 66.1 2.9 36 220-255 41-76 (339)
212 1q3t_A Cytidylate kinase; nucl 96.0 0.0042 1.4E-07 60.7 4.4 31 220-250 17-47 (236)
213 1uj2_A Uridine-cytidine kinase 96.0 0.0033 1.1E-07 62.1 3.6 27 220-246 23-49 (252)
214 1ltq_A Polynucleotide kinase; 96.0 0.0022 7.5E-08 64.9 2.3 29 220-248 3-32 (301)
215 2qt1_A Nicotinamide riboside k 96.0 0.0022 7.5E-08 61.2 2.1 32 220-251 22-54 (207)
216 2bdt_A BH3686; alpha-beta prot 96.0 0.004 1.4E-07 58.3 3.9 25 221-245 4-28 (189)
217 1m7g_A Adenylylsulfate kinase; 96.0 0.0047 1.6E-07 59.2 4.3 33 219-251 25-61 (211)
218 2qmh_A HPR kinase/phosphorylas 96.0 0.0029 9.7E-08 60.6 2.7 33 219-252 34-66 (205)
219 2j41_A Guanylate kinase; GMP, 96.0 0.0035 1.2E-07 59.3 3.3 26 218-243 5-30 (207)
220 2zts_A Putative uncharacterize 95.9 0.0068 2.3E-07 58.9 5.0 39 215-253 26-68 (251)
221 3tau_A Guanylate kinase, GMP k 95.9 0.0044 1.5E-07 59.4 3.5 27 219-245 8-34 (208)
222 1rz3_A Hypothetical protein rb 95.8 0.014 4.8E-07 55.4 7.0 35 220-254 23-60 (201)
223 3d3q_A TRNA delta(2)-isopenten 95.8 0.0043 1.5E-07 64.3 3.4 34 220-253 8-41 (340)
224 3kw6_A 26S protease regulatory 95.8 0.0078 2.7E-07 48.3 4.2 46 354-399 1-47 (78)
225 2gxq_A Heat resistant RNA depe 95.8 0.064 2.2E-06 50.4 11.3 23 220-242 39-62 (207)
226 2f6r_A COA synthase, bifunctio 95.8 0.0039 1.3E-07 62.9 2.8 31 220-251 76-106 (281)
227 1kao_A RAP2A; GTP-binding prot 95.7 0.046 1.6E-06 48.7 9.8 22 221-242 5-26 (167)
228 3zvl_A Bifunctional polynucleo 95.7 0.0032 1.1E-07 67.3 1.9 31 219-249 258-288 (416)
229 3fdi_A Uncharacterized protein 95.7 0.0054 1.8E-07 58.7 3.4 29 221-249 8-36 (201)
230 3tr0_A Guanylate kinase, GMP k 95.7 0.0067 2.3E-07 57.3 3.9 25 220-244 8-32 (205)
231 1g41_A Heat shock protein HSLU 95.7 0.011 3.8E-07 63.4 6.0 95 262-366 242-346 (444)
232 2c9o_A RUVB-like 1; hexameric 95.6 0.026 8.8E-07 60.9 8.9 73 271-370 296-380 (456)
233 1sky_E F1-ATPase, F1-ATP synth 95.6 0.028 9.6E-07 60.6 9.0 23 221-243 153-175 (473)
234 3c8u_A Fructokinase; YP_612366 95.6 0.01 3.4E-07 56.8 4.9 26 219-244 22-47 (208)
235 3exa_A TRNA delta(2)-isopenten 95.6 0.006 2E-07 62.5 3.5 34 221-254 5-38 (322)
236 2px0_A Flagellar biosynthesis 95.6 0.019 6.6E-07 58.3 7.1 36 219-254 105-144 (296)
237 1ex7_A Guanylate kinase; subst 95.5 0.0085 2.9E-07 56.7 4.1 28 220-247 2-29 (186)
238 2fz4_A DNA repair protein RAD2 95.5 0.011 3.8E-07 57.9 4.9 32 221-252 110-141 (237)
239 3a00_A Guanylate kinase, GMP k 95.5 0.0077 2.6E-07 56.5 3.5 25 220-244 2-26 (186)
240 1qde_A EIF4A, translation init 95.4 0.073 2.5E-06 50.8 10.4 51 182-235 14-67 (224)
241 1lvg_A Guanylate kinase, GMP k 95.4 0.0077 2.6E-07 57.3 3.3 26 219-244 4-29 (198)
242 3kl4_A SRP54, signal recogniti 95.4 0.012 4.2E-07 62.9 5.2 35 219-253 97-134 (433)
243 3dm5_A SRP54, signal recogniti 95.3 0.014 4.8E-07 62.6 5.4 63 192-255 74-139 (443)
244 1x6v_B Bifunctional 3'-phospho 95.3 0.012 4.1E-07 65.9 4.9 33 219-251 52-87 (630)
245 3asz_A Uridine kinase; cytidin 95.3 0.0064 2.2E-07 57.9 2.4 25 220-244 7-31 (211)
246 3gmt_A Adenylate kinase; ssgci 95.3 0.0088 3E-07 58.5 3.4 29 222-250 11-39 (230)
247 2v9p_A Replication protein E1; 95.3 0.01 3.5E-07 60.6 3.9 34 214-247 121-154 (305)
248 1htw_A HI0065; nucleotide-bind 95.2 0.012 4.3E-07 54.0 4.0 27 217-243 31-57 (158)
249 1z0j_A RAB-22, RAS-related pro 95.2 0.025 8.4E-07 50.9 6.0 22 221-242 8-29 (170)
250 3eph_A TRNA isopentenyltransfe 95.2 0.0089 3.1E-07 63.2 3.3 34 220-253 3-36 (409)
251 1cr0_A DNA primase/helicase; R 95.2 0.0091 3.1E-07 60.2 3.2 40 214-253 30-73 (296)
252 2krk_A 26S protease regulatory 95.2 0.014 4.6E-07 48.0 3.6 48 352-399 7-55 (86)
253 3bc1_A RAS-related protein RAB 95.2 0.045 1.5E-06 50.3 7.8 22 220-241 12-33 (195)
254 3b9q_A Chloroplast SRP recepto 95.2 0.014 4.6E-07 59.6 4.4 52 192-243 71-124 (302)
255 2v3c_C SRP54, signal recogniti 95.1 0.02 7E-07 61.3 6.0 35 219-253 99-136 (432)
256 2ce2_X GTPase HRAS; signaling 95.1 0.049 1.7E-06 48.4 7.7 22 221-242 5-26 (166)
257 1z6g_A Guanylate kinase; struc 95.1 0.012 4E-07 56.9 3.7 26 218-243 22-47 (218)
258 2atv_A RERG, RAS-like estrogen 95.1 0.054 1.9E-06 50.5 8.3 24 219-242 28-51 (196)
259 1vma_A Cell division protein F 95.1 0.018 6.1E-07 58.8 5.2 60 193-253 79-141 (306)
260 1r8s_A ADP-ribosylation factor 95.1 0.16 5.6E-06 45.2 11.3 21 222-242 3-23 (164)
261 3ney_A 55 kDa erythrocyte memb 95.1 0.014 4.7E-07 55.8 3.9 26 219-244 19-44 (197)
262 2pt7_A CAG-ALFA; ATPase, prote 95.1 0.014 4.9E-07 60.2 4.3 62 219-280 171-250 (330)
263 1u8z_A RAS-related protein RAL 95.1 0.061 2.1E-06 48.0 8.1 23 220-242 5-27 (168)
264 1znw_A Guanylate kinase, GMP k 95.0 0.013 4.3E-07 55.9 3.6 27 218-244 19-45 (207)
265 4dsu_A GTPase KRAS, isoform 2B 95.0 0.049 1.7E-06 50.0 7.5 22 221-242 6-27 (189)
266 3bh0_A DNAB-like replicative h 95.0 0.02 6.7E-07 58.7 5.2 39 215-253 64-105 (315)
267 1ek0_A Protein (GTP-binding pr 95.0 0.03 1E-06 50.2 6.0 22 221-242 5-26 (170)
268 2eyu_A Twitching motility prot 95.0 0.015 5.3E-07 57.9 4.2 27 217-243 23-49 (261)
269 1p9r_A General secretion pathw 94.9 0.034 1.1E-06 59.3 6.9 56 181-250 143-201 (418)
270 1c9k_A COBU, adenosylcobinamid 94.9 0.013 4.3E-07 55.2 3.2 33 222-255 2-34 (180)
271 1s96_A Guanylate kinase, GMP k 94.9 0.015 5.1E-07 56.4 3.7 28 217-244 14-41 (219)
272 2nzj_A GTP-binding protein REM 94.9 0.052 1.8E-06 49.1 7.2 21 221-241 6-26 (175)
273 1vec_A ATP-dependent RNA helic 94.9 0.1 3.5E-06 49.0 9.5 18 220-237 41-58 (206)
274 2a9k_A RAS-related protein RAL 94.9 0.077 2.6E-06 48.4 8.4 23 220-242 19-41 (187)
275 1w4r_A Thymidine kinase; type 94.9 0.037 1.3E-06 52.6 6.2 32 220-251 21-55 (195)
276 1r2q_A RAS-related protein RAB 94.8 0.041 1.4E-06 49.4 6.3 21 221-241 8-28 (170)
277 3hdt_A Putative kinase; struct 94.8 0.013 4.5E-07 57.0 3.0 29 221-249 16-44 (223)
278 1c1y_A RAS-related protein RAP 94.8 0.059 2E-06 48.2 7.2 22 221-242 5-26 (167)
279 2bov_A RAla, RAS-related prote 94.8 0.089 3E-06 49.0 8.7 23 220-242 15-37 (206)
280 2og2_A Putative signal recogni 94.8 0.018 6.1E-07 60.2 4.2 52 192-243 128-181 (359)
281 1gtv_A TMK, thymidylate kinase 94.8 0.0056 1.9E-07 58.3 0.3 25 221-245 2-26 (214)
282 2efe_B Small GTP-binding prote 94.8 0.048 1.6E-06 49.7 6.7 23 220-242 13-35 (181)
283 1zu4_A FTSY; GTPase, signal re 94.7 0.026 8.9E-07 58.0 5.2 38 217-254 103-143 (320)
284 3tqf_A HPR(Ser) kinase; transf 94.7 0.017 5.9E-07 53.9 3.4 29 219-248 16-44 (181)
285 4eaq_A DTMP kinase, thymidylat 94.7 0.018 6.2E-07 56.1 3.8 30 221-250 28-59 (229)
286 4gp7_A Metallophosphoesterase; 94.7 0.015 5.2E-07 53.8 3.0 21 218-238 8-28 (171)
287 1nrj_B SR-beta, signal recogni 94.7 0.03 1E-06 53.1 5.3 24 220-243 13-36 (218)
288 2yhs_A FTSY, cell division pro 94.6 0.018 6.3E-07 62.5 3.9 25 219-243 293-317 (503)
289 1x3s_A RAS-related protein RAB 94.6 0.081 2.8E-06 48.8 8.0 22 221-242 17-38 (195)
290 2oil_A CATX-8, RAS-related pro 94.6 0.042 1.4E-06 51.0 6.0 22 221-242 27-48 (193)
291 2ewv_A Twitching motility prot 94.6 0.02 6.9E-07 60.1 4.2 28 216-243 133-160 (372)
292 3q72_A GTP-binding protein RAD 94.6 0.037 1.3E-06 49.7 5.5 21 221-241 4-24 (166)
293 1odf_A YGR205W, hypothetical 3 94.6 0.022 7.7E-07 57.6 4.3 26 219-244 31-56 (290)
294 3con_A GTPase NRAS; structural 94.6 0.068 2.3E-06 49.3 7.3 22 221-242 23-44 (190)
295 1hv8_A Putative ATP-dependent 94.6 0.18 6E-06 51.4 11.1 58 182-242 6-67 (367)
296 3clv_A RAB5 protein, putative; 94.6 0.063 2.1E-06 49.6 7.1 23 220-242 8-30 (208)
297 2r6a_A DNAB helicase, replicat 94.6 0.031 1.1E-06 60.2 5.6 39 215-253 199-241 (454)
298 3fe2_A Probable ATP-dependent 94.6 0.12 4E-06 50.3 9.3 53 182-237 29-84 (242)
299 2jeo_A Uridine-cytidine kinase 94.5 0.02 6.9E-07 56.1 3.6 26 221-246 27-52 (245)
300 2axn_A 6-phosphofructo-2-kinas 94.4 0.022 7.4E-07 62.6 3.9 32 220-251 36-70 (520)
301 2i3b_A HCR-ntpase, human cance 94.4 0.02 6.9E-07 54.2 3.2 23 221-243 3-25 (189)
302 1np6_A Molybdopterin-guanine d 94.4 0.024 8.2E-07 52.9 3.6 25 219-243 6-30 (174)
303 3t1o_A Gliding protein MGLA; G 94.4 0.064 2.2E-06 49.5 6.6 23 221-243 16-38 (198)
304 2h57_A ADP-ribosylation factor 94.3 0.04 1.4E-06 51.1 5.1 23 221-243 23-45 (190)
305 3e70_C DPA, signal recognition 94.3 0.047 1.6E-06 56.3 6.0 35 217-251 127-164 (328)
306 2q6t_A DNAB replication FORK h 94.3 0.033 1.1E-06 59.8 5.0 39 215-253 196-238 (444)
307 3ice_A Transcription terminati 94.3 0.23 7.9E-06 52.2 11.1 25 219-243 174-198 (422)
308 1a7j_A Phosphoribulokinase; tr 94.3 0.015 5.3E-07 58.8 2.2 36 221-256 7-45 (290)
309 1z0f_A RAB14, member RAS oncog 94.3 0.066 2.3E-06 48.5 6.3 23 220-242 16-38 (179)
310 3tkl_A RAS-related protein RAB 94.2 0.056 1.9E-06 50.0 5.8 22 221-242 18-39 (196)
311 3lnc_A Guanylate kinase, GMP k 94.2 0.014 4.8E-07 56.5 1.6 26 219-244 27-53 (231)
312 2erx_A GTP-binding protein DI- 94.1 0.052 1.8E-06 48.8 5.3 21 221-241 5-25 (172)
313 1m8p_A Sulfate adenylyltransfe 94.1 0.028 9.5E-07 62.5 4.0 33 220-252 397-433 (573)
314 2ged_A SR-beta, signal recogni 94.1 0.049 1.7E-06 50.4 5.1 26 218-243 47-72 (193)
315 1q0u_A Bstdead; DEAD protein, 94.0 0.3 1E-05 46.4 10.8 52 182-236 4-58 (219)
316 2xau_A PRE-mRNA-splicing facto 94.0 0.13 4.3E-06 59.3 9.4 23 220-242 110-132 (773)
317 1xjc_A MOBB protein homolog; s 94.0 0.05 1.7E-06 50.6 4.9 32 221-252 6-40 (169)
318 2f7s_A C25KG, RAS-related prot 94.0 0.11 3.6E-06 49.2 7.4 21 221-241 27-47 (217)
319 1wb9_A DNA mismatch repair pro 93.9 0.14 4.8E-06 59.1 9.5 24 219-242 607-630 (800)
320 3oes_A GTPase rhebl1; small GT 93.9 0.077 2.6E-06 49.7 6.2 23 220-242 25-47 (201)
321 3ihw_A Centg3; RAS, centaurin, 93.9 0.15 5E-06 47.2 8.0 22 221-242 22-43 (184)
322 1rj9_A FTSY, signal recognitio 93.9 0.034 1.2E-06 56.7 3.9 25 219-243 102-126 (304)
323 2j37_W Signal recognition part 93.8 0.043 1.5E-06 59.9 4.8 35 219-253 101-138 (504)
324 3thx_B DNA mismatch repair pro 93.8 0.11 3.7E-06 60.7 8.4 24 218-241 672-695 (918)
325 4a1f_A DNAB helicase, replicat 93.8 0.045 1.5E-06 56.6 4.7 39 215-253 42-83 (338)
326 3thx_A DNA mismatch repair pro 93.8 0.1 3.6E-06 61.0 8.3 23 219-241 662-684 (934)
327 2oap_1 GSPE-2, type II secreti 93.8 0.021 7E-07 62.6 2.1 26 219-244 260-285 (511)
328 3aez_A Pantothenate kinase; tr 93.7 0.037 1.3E-06 56.7 3.8 26 219-244 90-115 (312)
329 1s2m_A Putative ATP-dependent 93.7 0.27 9.2E-06 51.0 10.6 56 180-238 19-77 (400)
330 4i1u_A Dephospho-COA kinase; s 93.7 0.034 1.2E-06 53.6 3.3 31 221-252 11-41 (210)
331 3kta_A Chromosome segregation 93.7 0.034 1.2E-06 51.4 3.2 24 221-244 28-51 (182)
332 2xxa_A Signal recognition part 93.6 0.052 1.8E-06 58.1 4.9 39 218-256 99-141 (433)
333 3tqc_A Pantothenate kinase; bi 93.6 0.063 2.2E-06 55.1 5.3 35 221-255 94-133 (321)
334 2ocp_A DGK, deoxyguanosine kin 93.6 0.037 1.3E-06 53.9 3.5 25 220-244 3-27 (241)
335 1zbd_A Rabphilin-3A; G protein 93.5 0.1 3.5E-06 48.7 6.3 23 220-242 9-31 (203)
336 1sq5_A Pantothenate kinase; P- 93.5 0.056 1.9E-06 55.0 4.7 35 221-255 82-121 (308)
337 2gk6_A Regulator of nonsense t 93.5 0.036 1.2E-06 62.3 3.5 33 221-253 197-233 (624)
338 3bgw_A DNAB-like replicative h 93.5 0.05 1.7E-06 58.5 4.5 39 215-253 193-234 (444)
339 1p5z_B DCK, deoxycytidine kina 93.5 0.018 6.1E-07 57.1 0.9 25 220-244 25-49 (263)
340 1fzq_A ADP-ribosylation factor 93.5 0.082 2.8E-06 48.7 5.4 23 220-242 17-39 (181)
341 3v9p_A DTMP kinase, thymidylat 93.4 0.046 1.6E-06 53.3 3.7 31 221-251 27-64 (227)
342 2ffh_A Protein (FFH); SRP54, s 93.4 0.094 3.2E-06 55.9 6.4 36 218-253 97-135 (425)
343 2dyk_A GTP-binding protein; GT 93.4 0.042 1.5E-06 48.9 3.2 22 221-242 3-24 (161)
344 2f9l_A RAB11B, member RAS onco 93.3 0.041 1.4E-06 51.6 3.1 22 221-242 7-28 (199)
345 3pey_A ATP-dependent RNA helic 93.3 0.44 1.5E-05 48.9 11.2 54 182-238 5-63 (395)
346 1z2a_A RAS-related protein RAB 93.2 0.043 1.5E-06 49.2 3.0 23 220-242 6-28 (168)
347 2wjy_A Regulator of nonsense t 93.2 0.065 2.2E-06 61.9 5.1 23 221-243 373-395 (800)
348 4edh_A DTMP kinase, thymidylat 93.2 0.043 1.5E-06 52.9 3.1 31 221-251 8-41 (213)
349 2www_A Methylmalonic aciduria 93.2 0.061 2.1E-06 55.8 4.4 24 220-243 75-98 (349)
350 2fh5_B SR-beta, signal recogni 93.2 0.082 2.8E-06 49.9 5.0 23 220-242 8-30 (214)
351 1bif_A 6-phosphofructo-2-kinas 93.2 0.026 9E-07 61.1 1.6 27 220-246 40-66 (469)
352 3tif_A Uncharacterized ABC tra 93.1 0.033 1.1E-06 54.5 2.2 27 219-245 31-57 (235)
353 2cbz_A Multidrug resistance-as 93.1 0.034 1.2E-06 54.5 2.2 26 218-243 30-55 (237)
354 1g8f_A Sulfate adenylyltransfe 93.1 0.058 2E-06 58.9 4.3 26 220-245 396-421 (511)
355 1oix_A RAS-related protein RAB 93.1 0.041 1.4E-06 51.4 2.7 23 221-243 31-53 (191)
356 2p5s_A RAS and EF-hand domain 93.0 0.11 3.9E-06 48.4 5.7 23 220-242 29-51 (199)
357 1q57_A DNA primase/helicase; d 93.0 0.053 1.8E-06 59.1 3.7 39 215-253 238-280 (503)
358 3tmk_A Thymidylate kinase; pho 93.0 0.064 2.2E-06 51.9 3.9 31 220-250 6-36 (216)
359 1zj6_A ADP-ribosylation factor 93.0 0.36 1.2E-05 44.3 9.0 22 220-241 17-38 (187)
360 2pcj_A ABC transporter, lipopr 92.9 0.03 1E-06 54.4 1.5 25 220-244 31-55 (224)
361 1j8m_F SRP54, signal recogniti 92.9 0.071 2.4E-06 54.1 4.3 37 219-255 98-137 (297)
362 2hup_A RAS-related protein RAB 92.9 0.14 4.8E-06 48.0 6.2 21 221-241 31-51 (201)
363 3p32_A Probable GTPase RV1496/ 92.9 0.076 2.6E-06 55.2 4.6 33 220-252 80-115 (355)
364 3b85_A Phosphate starvation-in 92.8 0.041 1.4E-06 52.8 2.3 23 220-242 23-45 (208)
365 1w36_D RECD, exodeoxyribonucle 92.8 0.051 1.8E-06 60.8 3.4 24 220-243 165-188 (608)
366 2gf0_A GTP-binding protein DI- 92.8 0.13 4.6E-06 47.5 5.8 22 220-241 9-30 (199)
367 1wms_A RAB-9, RAB9, RAS-relate 92.8 0.058 2E-06 48.9 3.2 22 221-242 9-30 (177)
368 2onk_A Molybdate/tungstate ABC 92.7 0.049 1.7E-06 53.5 2.8 25 220-244 25-49 (240)
369 1z08_A RAS-related protein RAB 92.7 0.061 2.1E-06 48.4 3.2 22 221-242 8-29 (170)
370 1sgw_A Putative ABC transporte 92.7 0.04 1.4E-06 53.2 2.0 27 219-245 35-61 (214)
371 2wji_A Ferrous iron transport 92.7 0.056 1.9E-06 49.0 2.9 22 221-242 5-26 (165)
372 1b0u_A Histidine permease; ABC 92.7 0.043 1.5E-06 54.7 2.3 25 220-244 33-57 (262)
373 2pze_A Cystic fibrosis transme 92.7 0.037 1.2E-06 54.0 1.7 26 219-244 34-59 (229)
374 3iuy_A Probable ATP-dependent 92.7 0.95 3.3E-05 43.0 11.9 19 219-237 57-75 (228)
375 1lw7_A Transcriptional regulat 92.6 0.049 1.7E-06 56.8 2.8 28 219-246 170-197 (365)
376 1mv5_A LMRA, multidrug resista 92.6 0.042 1.4E-06 54.0 2.1 26 218-243 27-52 (243)
377 1ky3_A GTP-binding protein YPT 92.6 0.062 2.1E-06 48.8 3.2 23 220-242 9-31 (182)
378 2gza_A Type IV secretion syste 92.6 0.035 1.2E-06 58.0 1.6 27 218-244 174-200 (361)
379 3sop_A Neuronal-specific septi 92.5 0.05 1.7E-06 54.4 2.6 24 221-244 4-27 (270)
380 2olj_A Amino acid ABC transpor 92.5 0.043 1.5E-06 54.7 2.0 25 220-244 51-75 (263)
381 2ixe_A Antigen peptide transpo 92.5 0.043 1.5E-06 55.0 2.0 27 218-244 44-70 (271)
382 1g6h_A High-affinity branched- 92.5 0.043 1.5E-06 54.4 2.0 25 220-244 34-58 (257)
383 2zu0_C Probable ATP-dependent 92.5 0.056 1.9E-06 54.0 2.8 25 219-243 46-70 (267)
384 1g16_A RAS-related protein SEC 92.5 0.056 1.9E-06 48.5 2.6 22 221-242 5-26 (170)
385 2ghi_A Transport protein; mult 92.4 0.047 1.6E-06 54.3 2.2 27 218-244 45-71 (260)
386 3cr8_A Sulfate adenylyltranfer 92.4 0.042 1.4E-06 60.7 2.0 25 220-244 370-394 (552)
387 2d2e_A SUFC protein; ABC-ATPas 92.4 0.052 1.8E-06 53.6 2.5 24 219-242 29-52 (250)
388 1yrb_A ATP(GTP)binding protein 92.4 0.1 3.6E-06 51.0 4.7 32 221-252 16-49 (262)
389 2qi9_C Vitamin B12 import ATP- 92.3 0.042 1.4E-06 54.3 1.7 27 219-245 26-52 (249)
390 2zej_A Dardarin, leucine-rich 92.3 0.055 1.9E-06 50.0 2.4 21 221-241 4-24 (184)
391 2ff7_A Alpha-hemolysin translo 92.3 0.046 1.6E-06 53.9 2.0 26 219-244 35-60 (247)
392 3gfo_A Cobalt import ATP-bindi 92.3 0.043 1.5E-06 55.1 1.7 25 220-244 35-59 (275)
393 1f2t_A RAD50 ABC-ATPase; DNA d 92.3 0.066 2.2E-06 48.4 2.8 23 221-243 25-47 (149)
394 2zj8_A DNA helicase, putative 92.3 0.4 1.4E-05 54.4 10.1 18 219-236 39-56 (720)
395 2wjg_A FEOB, ferrous iron tran 92.2 0.061 2.1E-06 49.5 2.6 22 221-242 9-30 (188)
396 3q85_A GTP-binding protein REM 92.2 0.07 2.4E-06 47.9 2.9 21 221-241 4-24 (169)
397 1tf7_A KAIC; homohexamer, hexa 92.2 0.058 2E-06 59.2 2.8 29 215-243 277-305 (525)
398 1upt_A ARL1, ADP-ribosylation 92.2 0.075 2.6E-06 47.8 3.1 22 220-241 8-29 (171)
399 1ji0_A ABC transporter; ATP bi 92.2 0.05 1.7E-06 53.4 2.0 25 220-244 33-57 (240)
400 2hxs_A RAB-26, RAS-related pro 92.1 0.067 2.3E-06 48.5 2.8 21 221-241 8-28 (178)
401 1vpl_A ABC transporter, ATP-bi 92.1 0.055 1.9E-06 53.7 2.3 26 219-244 41-66 (256)
402 3lv8_A DTMP kinase, thymidylat 92.1 0.064 2.2E-06 52.6 2.7 24 220-243 28-51 (236)
403 3b1v_A Ferrous iron uptake tra 92.1 0.19 6.4E-06 50.2 6.2 22 221-242 5-26 (272)
404 2qm8_A GTPase/ATPase; G protei 92.1 0.13 4.5E-06 53.1 5.1 24 220-243 56-79 (337)
405 4f4c_A Multidrug resistance pr 92.1 0.33 1.1E-05 59.2 9.4 28 217-244 442-469 (1321)
406 2yz2_A Putative ABC transporte 92.0 0.058 2E-06 53.8 2.2 26 219-244 33-58 (266)
407 2y8e_A RAB-protein 6, GH09086P 92.0 0.068 2.3E-06 48.4 2.6 21 221-241 16-36 (179)
408 4dkx_A RAS-related protein RAB 92.0 0.17 5.9E-06 48.6 5.6 21 221-241 15-35 (216)
409 2ihy_A ABC transporter, ATP-bi 92.0 0.05 1.7E-06 54.7 1.7 26 220-245 48-73 (279)
410 2nq2_C Hypothetical ABC transp 91.9 0.054 1.8E-06 53.6 2.0 26 219-244 31-56 (253)
411 2lkc_A Translation initiation 91.9 0.085 2.9E-06 47.8 3.2 23 219-241 8-30 (178)
412 1ls1_A Signal recognition part 91.9 0.15 5E-06 51.7 5.1 35 219-253 98-135 (295)
413 1tf7_A KAIC; homohexamer, hexa 91.9 0.064 2.2E-06 58.8 2.7 40 215-254 35-78 (525)
414 4g1u_C Hemin import ATP-bindin 91.9 0.054 1.9E-06 54.1 1.9 26 219-244 37-62 (266)
415 2it1_A 362AA long hypothetical 91.8 0.071 2.4E-06 55.7 2.8 25 220-244 30-54 (362)
416 3llu_A RAS-related GTP-binding 91.8 0.23 7.9E-06 46.2 6.1 22 221-242 22-43 (196)
417 3fvq_A Fe(3+) IONS import ATP- 91.8 0.062 2.1E-06 56.1 2.2 25 220-244 31-55 (359)
418 2yyz_A Sugar ABC transporter, 91.7 0.073 2.5E-06 55.5 2.8 25 220-244 30-54 (359)
419 2fn4_A P23, RAS-related protei 91.7 0.077 2.6E-06 48.1 2.7 23 220-242 10-32 (181)
420 1z47_A CYSA, putative ABC-tran 91.7 0.068 2.3E-06 55.7 2.5 25 220-244 42-66 (355)
421 1v43_A Sugar-binding transport 91.7 0.076 2.6E-06 55.7 2.8 25 220-244 38-62 (372)
422 3ld9_A DTMP kinase, thymidylat 91.7 0.09 3.1E-06 51.1 3.2 26 220-245 22-47 (223)
423 1m7b_A RND3/RHOE small GTP-bin 91.6 0.078 2.7E-06 48.8 2.6 23 220-242 8-30 (184)
424 3tw8_B RAS-related protein RAB 91.6 0.087 3E-06 47.7 2.9 22 220-241 10-31 (181)
425 3rlf_A Maltose/maltodextrin im 91.6 0.078 2.7E-06 55.7 2.8 25 220-244 30-54 (381)
426 2bme_A RAB4A, RAS-related prot 91.6 0.079 2.7E-06 48.5 2.6 23 220-242 11-33 (186)
427 2o8b_B DNA mismatch repair pro 91.6 0.33 1.1E-05 57.4 8.5 22 219-240 789-810 (1022)
428 2xzl_A ATP-dependent helicase 91.6 0.085 2.9E-06 60.9 3.4 34 221-254 377-414 (802)
429 2gf9_A RAS-related protein RAB 91.6 0.095 3.3E-06 48.4 3.1 22 221-242 24-45 (189)
430 2g6b_A RAS-related protein RAB 91.6 0.097 3.3E-06 47.5 3.1 22 221-242 12-33 (180)
431 4tmk_A Protein (thymidylate ki 91.5 0.083 2.8E-06 50.9 2.7 23 221-243 5-27 (213)
432 3kkq_A RAS-related protein M-R 91.5 0.098 3.4E-06 47.8 3.1 22 221-242 20-41 (183)
433 1ko7_A HPR kinase/phosphatase; 91.5 0.1 3.4E-06 53.4 3.4 29 219-248 144-172 (314)
434 2wsm_A Hydrogenase expression/ 91.5 0.085 2.9E-06 50.1 2.7 25 220-244 31-55 (221)
435 4ag6_A VIRB4 ATPase, type IV s 91.5 0.18 6.2E-06 52.8 5.6 35 219-253 35-72 (392)
436 3iby_A Ferrous iron transport 91.5 0.18 6.1E-06 49.8 5.2 22 221-242 3-24 (256)
437 2gks_A Bifunctional SAT/APS ki 91.4 0.13 4.6E-06 56.6 4.6 32 220-251 373-407 (546)
438 2f1r_A Molybdopterin-guanine d 91.4 0.044 1.5E-06 51.0 0.6 24 221-244 4-27 (171)
439 2gj8_A MNME, tRNA modification 91.4 0.072 2.5E-06 48.8 2.1 22 221-242 6-27 (172)
440 1g29_1 MALK, maltose transport 91.4 0.077 2.6E-06 55.7 2.5 24 220-243 30-53 (372)
441 1mh1_A RAC1; GTP-binding, GTPa 91.3 0.1 3.5E-06 47.6 3.0 22 221-242 7-28 (186)
442 3bwd_D RAC-like GTP-binding pr 91.2 0.11 3.7E-06 47.3 3.1 23 220-242 9-31 (182)
443 1wrb_A DJVLGB; RNA helicase, D 91.2 0.56 1.9E-05 45.5 8.5 17 220-236 61-77 (253)
444 1vg8_A RAS-related protein RAB 91.2 0.11 3.7E-06 48.5 3.2 23 220-242 9-31 (207)
445 3c5c_A RAS-like protein 12; GD 91.2 0.11 3.8E-06 48.1 3.2 22 221-242 23-44 (187)
446 2iwr_A Centaurin gamma 1; ANK 91.2 0.084 2.9E-06 48.0 2.3 22 221-242 9-30 (178)
447 2obl_A ESCN; ATPase, hydrolase 91.2 0.14 4.7E-06 53.2 4.2 29 220-248 72-100 (347)
448 1svi_A GTP-binding protein YSX 91.2 0.085 2.9E-06 48.8 2.4 23 220-242 24-46 (195)
449 1z06_A RAS-related protein RAB 91.2 0.11 3.8E-06 47.9 3.2 21 221-241 22-42 (189)
450 4hlc_A DTMP kinase, thymidylat 91.1 0.17 5.9E-06 48.2 4.5 30 222-251 5-36 (205)
451 1zd9_A ADP-ribosylation factor 91.1 0.11 3.8E-06 48.0 3.1 22 221-242 24-45 (188)
452 1m2o_B GTP-binding protein SAR 91.1 0.095 3.2E-06 48.8 2.6 21 221-241 25-45 (190)
453 2pjz_A Hypothetical protein ST 91.0 0.083 2.8E-06 52.6 2.2 25 219-243 30-54 (263)
454 3d31_A Sulfate/molybdate ABC t 91.0 0.065 2.2E-06 55.7 1.5 25 220-244 27-51 (348)
455 3dkp_A Probable ATP-dependent 91.0 1.5 5.3E-05 42.0 11.4 17 220-236 67-83 (245)
456 2cxx_A Probable GTP-binding pr 91.0 0.088 3E-06 48.3 2.2 22 221-242 3-24 (190)
457 2dpy_A FLII, flagellum-specifi 91.0 0.17 5.7E-06 54.3 4.7 30 220-249 158-187 (438)
458 2a5j_A RAS-related protein RAB 90.9 0.12 4E-06 47.9 3.1 22 221-242 23-44 (191)
459 3reg_A RHO-like small GTPase; 90.9 0.12 4.1E-06 47.9 3.1 22 221-242 25-46 (194)
460 3cph_A RAS-related protein SEC 90.9 0.12 4.1E-06 48.5 3.1 23 220-242 21-43 (213)
461 1tq4_A IIGP1, interferon-induc 90.9 0.14 4.9E-06 54.3 4.0 23 221-243 71-93 (413)
462 2bbs_A Cystic fibrosis transme 90.9 0.068 2.3E-06 54.1 1.5 26 218-243 63-88 (290)
463 2fg5_A RAB-22B, RAS-related pr 90.9 0.1 3.6E-06 48.4 2.7 22 221-242 25-46 (192)
464 3dz8_A RAS-related protein RAB 90.8 0.1 3.6E-06 48.3 2.6 23 221-243 25-47 (191)
465 2bcg_Y Protein YP2, GTP-bindin 90.7 0.11 3.7E-06 48.7 2.6 23 220-242 9-31 (206)
466 2vp4_A Deoxynucleoside kinase; 90.7 0.12 4.2E-06 49.9 3.1 29 221-250 22-50 (230)
467 3t5g_A GTP-binding protein RHE 90.7 0.11 3.8E-06 47.3 2.6 22 220-241 7-28 (181)
468 2npi_A Protein CLP1; CLP1-PCF1 90.7 0.11 3.8E-06 56.0 3.0 28 216-243 135-162 (460)
469 1pui_A ENGB, probable GTP-bind 90.7 0.058 2E-06 50.7 0.7 23 220-242 27-49 (210)
470 2qag_B Septin-6, protein NEDD5 90.6 0.11 3.8E-06 55.3 2.9 21 222-242 45-65 (427)
471 1knx_A Probable HPR(Ser) kinas 90.6 0.1 3.5E-06 53.2 2.5 30 219-249 147-176 (312)
472 1moz_A ARL1, ADP-ribosylation 90.6 0.12 3.9E-06 47.2 2.7 23 219-241 18-40 (183)
473 1ksh_A ARF-like protein 2; sma 90.6 0.095 3.3E-06 48.1 2.1 23 219-241 18-40 (186)
474 3k53_A Ferrous iron transport 90.6 0.096 3.3E-06 52.0 2.2 23 220-242 4-26 (271)
475 3lxx_A GTPase IMAP family memb 90.5 0.12 4E-06 50.2 2.7 23 220-242 30-52 (239)
476 3pqc_A Probable GTP-binding pr 90.4 0.11 3.7E-06 47.8 2.3 23 220-242 24-46 (195)
477 2hf9_A Probable hydrogenase ni 90.3 0.12 4.2E-06 49.2 2.6 24 220-243 39-62 (226)
478 2p67_A LAO/AO transport system 90.3 0.21 7.1E-06 51.6 4.6 33 219-251 56-91 (341)
479 1qhl_A Protein (cell division 90.3 0.049 1.7E-06 53.1 -0.2 23 222-244 30-52 (227)
480 2fu5_C RAS-related protein RAB 90.3 0.085 2.9E-06 48.2 1.5 22 220-241 9-30 (183)
481 1oxx_K GLCV, glucose, ABC tran 90.3 0.066 2.3E-06 55.8 0.7 24 220-243 32-55 (353)
482 2rcn_A Probable GTPase ENGC; Y 90.3 0.13 4.5E-06 53.5 3.0 25 220-244 216-240 (358)
483 3gd7_A Fusion complex of cysti 90.2 0.11 3.6E-06 54.9 2.2 25 219-243 47-71 (390)
484 1gwn_A RHO-related GTP-binding 90.2 0.13 4.3E-06 48.7 2.6 22 221-242 30-51 (205)
485 3tui_C Methionine import ATP-b 90.1 0.13 4.5E-06 53.7 2.8 25 220-244 55-79 (366)
486 2cjw_A GTP-binding protein GEM 90.1 0.16 5.4E-06 47.4 3.1 22 221-242 8-29 (192)
487 3nh6_A ATP-binding cassette SU 90.0 0.068 2.3E-06 54.5 0.6 28 217-244 78-105 (306)
488 1dek_A Deoxynucleoside monopho 90.0 0.15 5E-06 50.2 2.9 26 222-247 4-29 (241)
489 2ew1_A RAS-related protein RAB 89.9 0.14 4.7E-06 48.4 2.6 22 221-242 28-49 (201)
490 3hjn_A DTMP kinase, thymidylat 89.9 0.25 8.7E-06 46.7 4.5 31 222-252 3-36 (197)
491 2b6h_A ADP-ribosylation factor 89.9 0.13 4.4E-06 47.9 2.4 22 220-241 30-51 (192)
492 1u0l_A Probable GTPase ENGC; p 89.8 0.12 4E-06 52.4 2.1 25 220-244 170-194 (301)
493 3ch4_B Pmkase, phosphomevalona 89.8 0.22 7.7E-06 47.5 3.9 39 216-254 8-47 (202)
494 1xx6_A Thymidine kinase; NESG, 89.8 0.29 9.8E-06 46.3 4.7 31 220-250 9-42 (191)
495 3qks_A DNA double-strand break 89.7 0.18 6.1E-06 47.9 3.3 25 221-245 25-49 (203)
496 2atx_A Small GTP binding prote 89.7 0.15 5.2E-06 47.1 2.7 22 221-242 20-41 (194)
497 2fv8_A H6, RHO-related GTP-bin 89.6 0.15 5.2E-06 47.9 2.7 22 221-242 27-48 (207)
498 2q3h_A RAS homolog gene family 89.6 0.17 5.8E-06 47.1 2.9 21 221-241 22-42 (201)
499 2yv5_A YJEQ protein; hydrolase 89.5 0.16 5.6E-06 51.4 2.9 24 220-244 166-189 (302)
500 3ug7_A Arsenical pump-driving 89.4 0.4 1.4E-05 49.5 5.9 50 215-267 22-74 (349)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-40 Score=354.11 Aligned_cols=234 Identities=23% Similarity=0.288 Sum_probs=190.7
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT 256 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~ 256 (600)
.-.+.++|++|+|.+++|++|.+.+..++.+|+.|...|+++|+|+|||||||||||++|+|+|++++.+++.++++.+.
T Consensus 140 ~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 219 (405)
T 4b4t_J 140 EKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELV 219 (405)
T ss_dssp ECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGS
T ss_pred cCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhh
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999998886
Q ss_pred C------hhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEE
Q 041382 257 S------DSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITV 328 (600)
Q Consensus 257 ~------~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI 328 (600)
+ ...++.+|..+ .+||||||||||++++ .|....+ +.......++++||+.|||+.+.. +++||
T Consensus 220 sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~--~R~~~~~----~~~~~~~~~l~~lL~~lDg~~~~~--~V~vI 291 (405)
T 4b4t_J 220 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGS--TRVEGSG----GGDSEVQRTMLELLNQLDGFETSK--NIKII 291 (405)
T ss_dssp CSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTT--SCSCSSS----GGGGHHHHHHHHHHHHHHTTTCCC--CEEEE
T ss_pred ccccchHHHHHHHHHHHHHHhCCceEeeecchhhcc--CCCCCCC----CCcHHHHHHHHHHHHhhhccCCCC--CeEEE
Confidence 3 46788888777 5799999999999976 4432221 223456778999999999997654 59999
Q ss_pred EecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhhh-cCCCHHHHHHHHHh-------
Q 041382 329 FTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLMEK-VKVSPAEVAGELMK------- 400 (600)
Q Consensus 329 ~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~~-~~~t~a~i~~~l~~------- 400 (600)
+|||+|+.|||||+||||||++|+||+|+.++|.+||+.++.........++..++.. .+||+|||...+..
T Consensus 292 aATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air 371 (405)
T 4b4t_J 292 MATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALR 371 (405)
T ss_dssp EEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHH
T ss_pred eccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999876543332334444443 36999999987631
Q ss_pred cCCHHHHHHHHHHHHHhh
Q 041382 401 AKGSKTSLEDFITYLESK 418 (600)
Q Consensus 401 ~~~~~~al~~l~~~l~~~ 418 (600)
........+++..++.+.
T Consensus 372 ~~~~~vt~~Df~~Al~~v 389 (405)
T 4b4t_J 372 ERRIHVTQEDFELAVGKV 389 (405)
T ss_dssp TTCSBCCHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHH
Confidence 112223345566666544
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-40 Score=351.70 Aligned_cols=235 Identities=23% Similarity=0.275 Sum_probs=191.0
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT 256 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~ 256 (600)
.-.+.++|++|+|.+++|+.|.+.+..|+.+|++|...|++||+|+|||||||||||++|+|+|++++.+++.++++++.
T Consensus 174 ~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~ 253 (437)
T 4b4t_I 174 DKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELI 253 (437)
T ss_dssp ESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGC
T ss_pred ccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhh
Confidence 34566899999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred C------hhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEE
Q 041382 257 S------DSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITV 328 (600)
Q Consensus 257 ~------~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI 328 (600)
+ ...++.+|..+ .+||||||||||++++ .|..... ........++++||+.|||+... ++++||
T Consensus 254 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~--~R~~~~~----~~~~~~~~~l~~LL~~lDg~~~~--~~ViVI 325 (437)
T 4b4t_I 254 QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGT--KRYDSNS----GGEREIQRTMLELLNQLDGFDDR--GDVKVI 325 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSC--CCSCSSC----SSCCHHHHHHHHHHHHHHHCCCS--SSEEEE
T ss_pred hccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcc--cCCCCCC----CccHHHHHHHHHHHHHhhCcCCC--CCEEEE
Confidence 3 46678888776 5799999999999976 5533221 23445678899999999998655 459999
Q ss_pred EecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhhh-cCCCHHHHHHHHHh-------
Q 041382 329 FTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLMEK-VKVSPAEVAGELMK------- 400 (600)
Q Consensus 329 ~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~~-~~~t~a~i~~~l~~------- 400 (600)
+|||+|+.|||||+||||||++|+|++|+.++|.+||+.++.........++..++.. .+||+|||...+..
T Consensus 326 aATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air 405 (437)
T 4b4t_I 326 MATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALR 405 (437)
T ss_dssp EEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHH
T ss_pred EeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999976543322234444433 36999999987741
Q ss_pred cCCHHHHHHHHHHHHHhhh
Q 041382 401 AKGSKTSLEDFITYLESKE 419 (600)
Q Consensus 401 ~~~~~~al~~l~~~l~~~~ 419 (600)
........++|.+++++..
T Consensus 406 ~~~~~It~eDf~~Al~rv~ 424 (437)
T 4b4t_I 406 ERRMQVTAEDFKQAKERVM 424 (437)
T ss_dssp TTCSCBCHHHHHHHHHHHH
T ss_pred cCCCccCHHHHHHHHHHHh
Confidence 1112233456666665543
No 3
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-39 Score=346.84 Aligned_cols=215 Identities=25% Similarity=0.317 Sum_probs=181.8
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT 256 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~ 256 (600)
.-.+.++|++|+|.+++|+.|.+.+..|+.+|++|...|++||+|+|||||||||||++|+|+|++++.+++.++++.+.
T Consensus 164 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~ 243 (428)
T 4b4t_K 164 NEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFV 243 (428)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred CCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhh
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred C------hhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEE
Q 041382 257 S------DSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITV 328 (600)
Q Consensus 257 ~------~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI 328 (600)
+ ...++.+|..+ .+||||||||+|++++ .|..... +.......++++||+.|||+.+.+ +++||
T Consensus 244 ~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~--~R~~~~~----~~~~~~~r~l~~lL~~ldg~~~~~--~v~vI 315 (428)
T 4b4t_K 244 HKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIAT--KRFDAQT----GSDREVQRILIELLTQMDGFDQST--NVKVI 315 (428)
T ss_dssp CSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHC--SCSSSCS----CCCCHHHHHHHHHHHHHHHSCSSC--SEEEE
T ss_pred ccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhc--cccCCCC----CCChHHHHHHHHHHHHhhCCCCCC--CEEEE
Confidence 3 46788888776 5799999999999986 4533222 233456789999999999997764 49999
Q ss_pred EecCCcCcCCHHHHhcCCcceEEEeC-CCCHHHHHHHHHHhcCcCCCccHHHHHHHhhh-cCCCHHHHHHHHH
Q 041382 329 FTTNYKDRIDPALLRAGRMDRHINLS-YCTFSTFKQLAANYLDINDHDLYCHIEKLMEK-VKVSPAEVAGELM 399 (600)
Q Consensus 329 ~TTN~~~~Ld~aLlrpgRfd~~I~~~-~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~~-~~~t~a~i~~~l~ 399 (600)
+|||+|+.|||||+||||||++|+|| +|+.++|..|++.++.........++..++.. .+||+|||...+.
T Consensus 316 ~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~ 388 (428)
T 4b4t_K 316 MATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQ 388 (428)
T ss_dssp EEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHH
T ss_pred EecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHH
Confidence 99999999999999999999999996 89999999999999875443222233444433 3699999998874
No 4
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-39 Score=349.77 Aligned_cols=233 Identities=20% Similarity=0.258 Sum_probs=189.3
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCC-
Q 041382 179 DHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTS- 257 (600)
Q Consensus 179 ~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~- 257 (600)
.+.++|++|+|.+++|+.|.+.+..++.+|+.|...|++||+|+|||||||||||++|+|+|++++.+++.++++.+.+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk 254 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDK 254 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCS
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccc
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999999988863
Q ss_pred -----hhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEe
Q 041382 258 -----DSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFT 330 (600)
Q Consensus 258 -----~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~T 330 (600)
...++.+|..+ .+||||||||||++++ .|..... ........++++||+.|||+.+. ++++||+|
T Consensus 255 ~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~--~R~~~~~----~~~~~~~~~l~~lL~~lDg~~~~--~~vivI~A 326 (437)
T 4b4t_L 255 YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGG--RRFSEGT----SADREIQRTLMELLTQMDGFDNL--GQTKIIMA 326 (437)
T ss_dssp SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSC--CCSSSCC----SSTTHHHHHHHHHHHHHHSSSCT--TSSEEEEE
T ss_pred cchHHHHHHHHHHHHHHhcCCceeeeeccccccc--ccccCCC----CcchHHHHHHHHHHHHhhcccCC--CCeEEEEe
Confidence 35677888766 5899999999999975 4533221 23345677899999999999765 45999999
Q ss_pred cCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhhh-cCCCHHHHHHHHHh-------cC
Q 041382 331 TNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLMEK-VKVSPAEVAGELMK-------AK 402 (600)
Q Consensus 331 TN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~~-~~~t~a~i~~~l~~-------~~ 402 (600)
||+|+.|||||+||||||++|+||+|+.++|.+||+.++.........++..++.. .+||+|||...+.. ..
T Consensus 327 TNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~ 406 (437)
T 4b4t_L 327 TNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDD 406 (437)
T ss_dssp ESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTT
T ss_pred cCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999876543322234444443 36999999987731 11
Q ss_pred CHHHHHHHHHHHHHhhh
Q 041382 403 GSKTSLEDFITYLESKE 419 (600)
Q Consensus 403 ~~~~al~~l~~~l~~~~ 419 (600)
......++|.+++++..
T Consensus 407 ~~~i~~~d~~~Al~~v~ 423 (437)
T 4b4t_L 407 RDHINPDDLMKAVRKVA 423 (437)
T ss_dssp CSSBCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 12233455666665443
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-39 Score=350.50 Aligned_cols=216 Identities=23% Similarity=0.281 Sum_probs=181.5
Q ss_pred ccCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCcc
Q 041382 176 VNLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVV 255 (600)
Q Consensus 176 v~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~ 255 (600)
+.-.++++|++|+|.+++|++|.+.+..|+.+|+.|...|+++|+|+|||||||||||++|+|+|++++.+++.++++.+
T Consensus 172 ~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l 251 (434)
T 4b4t_M 172 VDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQL 251 (434)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred cCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhh
Confidence 44567789999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CC------hhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEE
Q 041382 256 TS------DSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKIT 327 (600)
Q Consensus 256 ~~------~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ii 327 (600)
.+ ...++.+|..+ .+||||||||||++++ .|..... ++......++++||+.|||+.+. ++++|
T Consensus 252 ~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~--~R~~~~~----~~~~~~~~~~~~lL~~ldg~~~~--~~ViV 323 (434)
T 4b4t_M 252 VQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGT--KRFDSEK----SGDREVQRTMLELLNQLDGFSSD--DRVKV 323 (434)
T ss_dssp CSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHC--CCSSGGG----GTTHHHHHHHHHHHHHHTTSCSS--CSSEE
T ss_pred hhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhh--ccCCCCC----CCchHHHHHHHHHHHHhhccCCC--CCEEE
Confidence 63 46688888766 4799999999999986 4533211 12334567899999999999765 45999
Q ss_pred EEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhhh-cCCCHHHHHHHHH
Q 041382 328 VFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLMEK-VKVSPAEVAGELM 399 (600)
Q Consensus 328 I~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~~-~~~t~a~i~~~l~ 399 (600)
|+|||+|+.|||||+||||||++|+||+|+.++|.+||+.++..........+..++.. .+||+|||...+.
T Consensus 324 IaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~ 396 (434)
T 4b4t_M 324 LAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTV 396 (434)
T ss_dssp EEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHH
T ss_pred EEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999998875432222223334333 3699999998774
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.9e-39 Score=343.14 Aligned_cols=215 Identities=22% Similarity=0.233 Sum_probs=181.3
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT 256 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~ 256 (600)
.-.+.++|++|+|.+++|+.|.+.+..++.+|+.|..+|+++|+|+|||||||||||++|+|+|++++.+++.++++.+.
T Consensus 201 ~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~ 280 (467)
T 4b4t_H 201 EEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELV 280 (467)
T ss_dssp ESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhh
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999999998886
Q ss_pred C------hhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEE
Q 041382 257 S------DSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITV 328 (600)
Q Consensus 257 ~------~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI 328 (600)
+ ...++.+|..+ .+||||||||+|+++. .|..... +.......+++.+|+.|||+... .+++||
T Consensus 281 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~--~R~~~~~----~~~~~~~~~l~~lL~~lDg~~~~--~~ViVI 352 (467)
T 4b4t_H 281 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGG--ARFDDGA----GGDNEVQRTMLELITQLDGFDPR--GNIKVM 352 (467)
T ss_dssp CCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSB--CCSSSSC----GGGGHHHHHHHHHHHHHHSSCCT--TTEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcCCceEeecccccccc--cccCcCC----CccHHHHHHHHHHHHHhhccCCC--CcEEEE
Confidence 3 46788888776 5899999999999975 4433221 22344567899999999998665 459999
Q ss_pred EecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhhh-cCCCHHHHHHHHH
Q 041382 329 FTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLMEK-VKVSPAEVAGELM 399 (600)
Q Consensus 329 ~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~~-~~~t~a~i~~~l~ 399 (600)
+|||+|+.|||||+||||||++|+|++|+.++|.+||+.++..........+..++.. .+||+|||...+.
T Consensus 353 aATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~ 424 (467)
T 4b4t_H 353 FATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCT 424 (467)
T ss_dssp EECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred eCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999876543322223334332 3699999998774
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=3.6e-37 Score=353.05 Aligned_cols=330 Identities=20% Similarity=0.228 Sum_probs=241.5
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC---
Q 041382 180 HPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT--- 256 (600)
Q Consensus 180 ~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~--- 256 (600)
+.++|++|+|.+++|++|.+.+..++.+|+.|..+|..+|+|+|||||||||||++|+++|++++.+++.++++++.
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~ 278 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSC
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhccc
Confidence 44789999999999999999999999999999999999999999999999999999999999999999999987765
Q ss_pred ---ChhHHHHHHhhCC--CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEec
Q 041382 257 ---SDSSLEYLLLHVP--NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTT 331 (600)
Q Consensus 257 ---~~~~l~~~~~~~~--~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TT 331 (600)
+...++.+|..+. +||||||||||++++ .|... .......++++||..||++.+.. +++||+||
T Consensus 279 ~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~--~r~~~-------~~~~~~riv~~LL~~mdg~~~~~--~V~VIaaT 347 (806)
T 3cf2_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAP--KREKT-------HGEVERRIVSQLLTLMDGLKQRA--HVIVMAAT 347 (806)
T ss_dssp TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCC--TTTTC-------CCTTHHHHHHHHHTHHHHCCGGG--CEEEEEEC
T ss_pred chHHHHHHHHHHHHHHHcCCeEEEEehhccccc--ccCCC-------CChHHHHHHHHHHHHHhcccccC--CEEEEEec
Confidence 3467888998774 799999999999976 44322 22456788999999999997764 49999999
Q ss_pred CCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhhh-cCCCHHHHHHHHHhcCCHHHHHHH
Q 041382 332 NYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLMEK-VKVSPAEVAGELMKAKGSKTSLED 410 (600)
Q Consensus 332 N~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~~-~~~t~a~i~~~l~~~~~~~~al~~ 410 (600)
|+++.|||||+||||||++|+++.|+.++|.+|++.++..........+..++.. .+|+++|+...+. ++++.+
T Consensus 348 N~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~-----eA~~~A 422 (806)
T 3cf2_A 348 NRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCS-----EAALQA 422 (806)
T ss_dssp SSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHH-----HHHHHH
T ss_pred CChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHH-----HHHHHH
Confidence 9999999999999999999999999999999999999876543333334444443 4799999998874 556665
Q ss_pred HHHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCccccccccccCCCcc-hhhHHHHHHHHHH
Q 041382 411 FITYLESKESQEEKSSTAPPLASNVDGNRPEPQENG-NNISKSGVQDQSSHTETEAADMGNVGGYS-VKAEFANIIKAIF 488 (600)
Q Consensus 411 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~S~~~~~~~~s~~~~~~~~~v~v~g~~-v~~~~~~~v~~~~ 488 (600)
+.+.........................++..+.+. .+...+.... ...+..|.+++|++ ++..+.+.+.++
T Consensus 423 ~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~-----~~p~v~w~diggl~~~k~~l~e~v~~p- 496 (806)
T 3cf2_A 423 IRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVV-----EVPQVTWEDIGGLEDVKRELQELVQYP- 496 (806)
T ss_dssp HHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCC-----BCCCCCSTTCCSCHHHHHHHTTTTTTT-
T ss_pred HHhccccccccccccchhhhccceeeHHHHHHHHHhCCCcccccccc-----cCCCCCHHHhCCHHHHHHHHHHHHHhh-
Confidence 555544332221111000000000000011001110 0011111111 12347899999999 999999999999
Q ss_pred hhhhHHHhcCccchhhHHHHH--------HHHHHHHHHHHhccccccccHHHH
Q 041382 489 SKHGDIAANSCLQSKQCRSSL--------LEIVCRIIQKLQKAKLKDLKETEL 533 (600)
Q Consensus 489 ~k~~di~~~~~~~~~~~r~~~--------~~~l~~vi~~l~~~p~~~ls~~el 533 (600)
.+||+.+.++..+...- .+ -..++..|+.-++.|.-.++-.++
T Consensus 497 ~~~p~~f~~~g~~~~~g--vLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l 547 (806)
T 3cf2_A 497 VEHPDKFLKFGMTPSKG--VLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 547 (806)
T ss_dssp TTCSGGGSSSCCCCCSC--CEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHH
T ss_pred hhCHHHHHhcCCCCCce--EEEecCCCCCchHHHHHHHHHhCCceEEeccchh
Confidence 89999999886543210 00 024677777778887777776665
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.3e-34 Score=331.97 Aligned_cols=226 Identities=21% Similarity=0.270 Sum_probs=169.3
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC--
Q 041382 179 DHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT-- 256 (600)
Q Consensus 179 ~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~-- 256 (600)
.++++|++++|.+++|+.|.+.+..++.+++.|.+.|..+++|+|||||||||||++|+|+|++++.+++.++.+++.
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~ 550 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTT
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhcc
Confidence 355799999999999999999999999999999999999999999999999999999999999999999999977763
Q ss_pred ----ChhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEe
Q 041382 257 ----SDSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFT 330 (600)
Q Consensus 257 ----~~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~T 330 (600)
++..++.+|..+ ..||||||||||++++ .|+...+ +.......++++||.+|||+.+. .+++||+|
T Consensus 551 ~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~--~R~~~~~----~~~~~~~rv~~~lL~~mdg~~~~--~~V~vi~a 622 (806)
T 3cf2_A 551 WFGESEANVREIFDKARQAAPCVLFFDELDSIAK--ARGGNIG----DGGGAADRVINQILTEMDGMSTK--KNVFIIGA 622 (806)
T ss_dssp TCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------------CHHHHHHHHHHHSSCSS--SSEEEECC
T ss_pred ccchHHHHHHHHHHHHHHcCCceeechhhhHHhh--ccCCCCC----CCchHHHHHHHHHHHHHhCCCCC--CCEEEEEe
Confidence 567899999887 4799999999999986 5532211 12345567899999999999765 45999999
Q ss_pred cCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhhh-cCCCHHHHHHHHHhcCCHHHHHH
Q 041382 331 TNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLMEK-VKVSPAEVAGELMKAKGSKTSLE 409 (600)
Q Consensus 331 TN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~~-~~~t~a~i~~~l~~~~~~~~al~ 409 (600)
||+|+.||||++||||||++|+||+|+.++|.+||+.++.........++..+++. .+||+|||...+. ++++.
T Consensus 623 TN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~-----~A~~~ 697 (806)
T 3cf2_A 623 TNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQ-----RACKL 697 (806)
T ss_dssp -CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHH-----HHHHH
T ss_pred CCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHH-----HHHHH
Confidence 99999999999999999999999999999999999999976554333444455443 3699999999885 67777
Q ss_pred HHHHHHHh
Q 041382 410 DFITYLES 417 (600)
Q Consensus 410 ~l~~~l~~ 417 (600)
++.+.++.
T Consensus 698 a~r~~~~~ 705 (806)
T 3cf2_A 698 AIRESIES 705 (806)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHh
Confidence 77776653
No 9
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.96 E-value=8.2e-29 Score=256.27 Aligned_cols=225 Identities=20% Similarity=0.261 Sum_probs=179.2
Q ss_pred CCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC-
Q 041382 178 LDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT- 256 (600)
Q Consensus 178 ~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~- 256 (600)
..++.+|++++|.+++++.+.+.+..++.+++.|...|.++++++|||||||||||++|+++|+.++.+++.++++.+.
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 87 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh
Confidence 3466899999999999999999999999999999999999999999999999999999999999999999999987763
Q ss_pred -----ChhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEE
Q 041382 257 -----SDSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVF 329 (600)
Q Consensus 257 -----~~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~ 329 (600)
+...++.+|..+ ..|+||||||||.+.. .|..... .........++.||..||++... .+++||+
T Consensus 88 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~--~~~~~~~----~~~~~~~~~~~~lL~~l~~~~~~--~~v~vi~ 159 (301)
T 3cf0_A 88 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAK--ARGGNIG----DGGGAADRVINQILTEMDGMSTK--KNVFIIG 159 (301)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHH--HHTTTTC----CSSCSCCHHHHHHHHHHHSSCTT--SSEEEEE
T ss_pred hhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhh--ccCCCcC----CcchHHHHHHHHHHHHhhcccCC--CCEEEEE
Confidence 345677777765 4689999999999976 3322211 11233456788999999988543 4599999
Q ss_pred ecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhh-hcCCCHHHHHHHHHhcCCHHHHH
Q 041382 330 TTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLME-KVKVSPAEVAGELMKAKGSKTSL 408 (600)
Q Consensus 330 TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~-~~~~t~a~i~~~l~~~~~~~~al 408 (600)
|||+++.||++++|||||+..|+++.|+.++|.+|++.++..........+..+.. ..+++++||...+- .+++
T Consensus 160 atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~-----~a~~ 234 (301)
T 3cf0_A 160 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQ-----RACK 234 (301)
T ss_dssp EESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHH-----HHHH
T ss_pred ecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHH-----HHHH
Confidence 99999999999999999999999999999999999999987643221122223332 34699999998874 4444
Q ss_pred HHHHHHH
Q 041382 409 EDFITYL 415 (600)
Q Consensus 409 ~~l~~~l 415 (600)
..+.+.+
T Consensus 235 ~a~~~~~ 241 (301)
T 3cf0_A 235 LAIRESI 241 (301)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 10
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.96 E-value=8.5e-29 Score=252.89 Aligned_cols=219 Identities=19% Similarity=0.279 Sum_probs=168.4
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCC--
Q 041382 180 HPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTS-- 257 (600)
Q Consensus 180 ~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~-- 257 (600)
+.++|++|+|.+++|+.|.+.+..++.++..|+.+|..+++|++|+||||||||++++++|+.++.+++.++...+.+
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY 84 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh
Confidence 457899999999999999999999999999999999999999999999999999999999999999999999887753
Q ss_pred ----hhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEec
Q 041382 258 ----DSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTT 331 (600)
Q Consensus 258 ----~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TT 331 (600)
...+..+|..+ ..|+|+|+||+|.+.. .|.... .......++.++..|+|.... ..++++++|
T Consensus 85 ~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~--~r~~~~-------~~~~~~~~~~~l~~Lsgg~~~--~~~i~ia~t 153 (274)
T 2x8a_A 85 VGESERAVRQVFQRAKNSAPCVIFFDEVDALCP--RRSDRE-------TGASVRVVNQLLTEMDGLEAR--QQVFIMAAT 153 (274)
T ss_dssp THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC------------------CTTHHHHHHHHHHTCCST--TCEEEEEEE
T ss_pred hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhc--ccCCCc-------chHHHHHHHHHHHhhhccccc--CCEEEEeec
Confidence 24567777764 4799999999999864 232110 112335678999999998544 348999999
Q ss_pred CCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCC---CccHHHHHHHhh---hcCCCHHHHHHHHHhcCCHH
Q 041382 332 NYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIND---HDLYCHIEKLME---KVKVSPAEVAGELMKAKGSK 405 (600)
Q Consensus 332 N~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~---~~~~~~i~~l~~---~~~~t~a~i~~~l~~~~~~~ 405 (600)
|+|+.|||+++||||||.+|++++|+.++|.+|++.++.... ......+..+.. ..+||+|||...+- +
T Consensus 154 n~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~-----~ 228 (274)
T 2x8a_A 154 NRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVR-----E 228 (274)
T ss_dssp SCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHH-----H
T ss_pred CChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHH-----H
Confidence 999999999999999999999999999999999999885321 111222344443 34899999999874 5
Q ss_pred HHHHHHHHH
Q 041382 406 TSLEDFITY 414 (600)
Q Consensus 406 ~al~~l~~~ 414 (600)
+++..+.+.
T Consensus 229 a~~~a~~~~ 237 (274)
T 2x8a_A 229 ASICALRQE 237 (274)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
No 11
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.95 E-value=3.4e-27 Score=246.52 Aligned_cols=220 Identities=19% Similarity=0.209 Sum_probs=177.6
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc-CCcEEEEecCccC-
Q 041382 179 DHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM-NYDIYNLNLSVVT- 256 (600)
Q Consensus 179 ~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l-~~~~~~l~~~~~~- 256 (600)
.++++|++|+|.+++|+.|.+.+..++.+++.|.. +..+++|+|||||||||||++|+++|+++ +.+++.++++.+.
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 45689999999999999999999999999998874 35667899999999999999999999999 8999999988765
Q ss_pred -----ChhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEE
Q 041382 257 -----SDSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVF 329 (600)
Q Consensus 257 -----~~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~ 329 (600)
+...++.+|..+ .+|+||||||||.+.+ .|... ........+++|+..||++... ..+++||+
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~--~~~~~-------~~~~~~~~~~~ll~~ld~~~~~-~~~v~vI~ 154 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCG--SRSEN-------ESEAARRIKTEFLVQMQGVGVD-NDGILVLG 154 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGC--CSSSC-------CTTHHHHHHHHHHHHHHCSSSC-CTTEEEEE
T ss_pred hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcc--ccccc-------cchHHHHHHHHHHHHHhccccc-CCCEEEEE
Confidence 345677777655 5799999999999975 33221 1234567789999999998532 24699999
Q ss_pred ecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCc-cHHHHHHHhhhc-CCCHHHHHHHHHhcCCHHHH
Q 041382 330 TTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHD-LYCHIEKLMEKV-KVSPAEVAGELMKAKGSKTS 407 (600)
Q Consensus 330 TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~-~~~~i~~l~~~~-~~t~a~i~~~l~~~~~~~~a 407 (600)
|||+++.+|++++| ||+..|++++|+.++|.+|++.++...... ....+..+.... ++|++||...+- +++
T Consensus 155 atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~-----~A~ 227 (322)
T 1xwi_A 155 ATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVR-----DAL 227 (322)
T ss_dssp EESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHH-----HHH
T ss_pred ecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH-----HHH
Confidence 99999999999999 999999999999999999999998765443 344555565543 699999998874 555
Q ss_pred HHHHHHHHH
Q 041382 408 LEDFITYLE 416 (600)
Q Consensus 408 l~~l~~~l~ 416 (600)
+..+.+...
T Consensus 228 ~~a~r~~~~ 236 (322)
T 1xwi_A 228 MQPVRKVQS 236 (322)
T ss_dssp THHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555543
No 12
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=2.8e-27 Score=241.77 Aligned_cols=215 Identities=23% Similarity=0.258 Sum_probs=173.3
Q ss_pred ccCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCcc
Q 041382 176 VNLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVV 255 (600)
Q Consensus 176 v~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~ 255 (600)
+...++.+|++++|.+++++.|.+.+..++..++.|...|..+++++|||||||||||++|+++|+.++.+++.+++..+
T Consensus 8 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~ 87 (285)
T 3h4m_A 8 VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSEL 87 (285)
T ss_dssp EESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGG
T ss_pred ccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHH
Confidence 44566789999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred CC------hhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEE
Q 041382 256 TS------DSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKIT 327 (600)
Q Consensus 256 ~~------~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ii 327 (600)
.+ ...+..+|..+ ..|+||||||+|.+.+ +|.... .+........+..+++.+++.... .++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~--~~~~~~----~~~~~~~~~~l~~ll~~~~~~~~~--~~~~v 159 (285)
T 3h4m_A 88 VKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAA--KRTDAL----TGGDREVQRTLMQLLAEMDGFDAR--GDVKI 159 (285)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHB--CCSSSC----CGGGGHHHHHHHHHHHHHHTTCSS--SSEEE
T ss_pred HHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcc--cCcccc----CCccHHHHHHHHHHHHHhhCCCCC--CCEEE
Confidence 53 23455555544 4689999999999975 332211 112334567888899999887543 45999
Q ss_pred EEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhhh-cCCCHHHHHHHH
Q 041382 328 VFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLMEK-VKVSPAEVAGEL 398 (600)
Q Consensus 328 I~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~~-~~~t~a~i~~~l 398 (600)
|+|||.++.+|++++|||||+..++++.|+.++|.+|++.++..........+..+... .+++++++...+
T Consensus 160 I~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~ 231 (285)
T 3h4m_A 160 IGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAIC 231 (285)
T ss_dssp EEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHH
T ss_pred EEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999998875443222223333332 358999998866
No 13
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.95 E-value=2.8e-27 Score=258.26 Aligned_cols=212 Identities=23% Similarity=0.315 Sum_probs=168.9
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCC-
Q 041382 179 DHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTS- 257 (600)
Q Consensus 179 ~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~- 257 (600)
..+.+|++|+|.++.|+++.+.+. ++.++..|..+|...++|+||+||||||||++++++|++++.+++.++++++..
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~-~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVE-FLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHH-HHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHH-HhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 456799999999999999998775 567889999999999999999999999999999999999999999999887752
Q ss_pred -----hhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEe
Q 041382 258 -----DSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFT 330 (600)
Q Consensus 258 -----~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~T 330 (600)
...++.+|..+ ..||||||||||.+.. .|.... .+.......++++||..||++... .+++||+|
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~--~r~~~~----~g~~~~~~~~l~~LL~~ld~~~~~--~~viVIaa 160 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGR--HRGAGL----GGGHDEREQTLNQLLVEMDGFDSK--EGIIVMAA 160 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCC--C-------------CHHHHHHHHHHHHHHHSCGG--GTEEEEEE
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhh--hccccc----CcCcHHHHHHHHHHHHHHhccCCC--CCEEEEEe
Confidence 35567777766 4799999999999964 332211 122344567899999999987654 35999999
Q ss_pred cCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhhh-cCCCHHHHHHHHH
Q 041382 331 TNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLMEK-VKVSPAEVAGELM 399 (600)
Q Consensus 331 TN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~~-~~~t~a~i~~~l~ 399 (600)
||+++.|||+++||||||..|.++.|+.++|.+|++.++..........+..+... .+++++||.+.+-
T Consensus 161 Tn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~ 230 (476)
T 2ce7_A 161 TNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVN 230 (476)
T ss_dssp ESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred cCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999998876432221223333332 3689999988763
No 14
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.95 E-value=7.4e-27 Score=235.47 Aligned_cols=214 Identities=23% Similarity=0.313 Sum_probs=164.5
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT 256 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~ 256 (600)
+..++.+|++++|.+++++.+.+.+. ++..+..|...|...++|+|||||||||||++++++|+.++.+++.++++.+.
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~ 82 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELVE-YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 82 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHHH-HHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSST
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHHH-HHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHH
Confidence 45677899999999999999988764 57778888899999999999999999999999999999999999999988764
Q ss_pred ------ChhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEE
Q 041382 257 ------SDSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITV 328 (600)
Q Consensus 257 ------~~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI 328 (600)
....++.+|..+ ..|+|+||||+|.+.. .+..... +........++.+|..++++... ..+++|
T Consensus 83 ~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~--~~~~~~~----~~~~~~~~~~~~ll~~l~~~~~~--~~~~vI 154 (257)
T 1lv7_A 83 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGR--QRGAGLG----GGHDEREQTLNQMLVEMDGFEGN--EGIIVI 154 (257)
T ss_dssp TSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTC--CCSTTSC----CTTCHHHHHHHHHHHHHHTCCSS--SCEEEE
T ss_pred HHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhcc--CCCCCcC----CCchHHHHHHHHHHHHhhCcccC--CCEEEE
Confidence 235567777665 3689999999999864 2221111 12233456788999999988643 459999
Q ss_pred EecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhhh-cCCCHHHHHHHHH
Q 041382 329 FTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLMEK-VKVSPAEVAGELM 399 (600)
Q Consensus 329 ~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~~-~~~t~a~i~~~l~ 399 (600)
+|||+++.+|++++|||||+..|+++.|+.++|.+|++.++.............+... .+++++++...+.
T Consensus 155 ~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~ 226 (257)
T 1lv7_A 155 AATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVN 226 (257)
T ss_dssp EEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred EeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999865432221222233332 3589999998763
No 15
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.95 E-value=2.5e-28 Score=268.26 Aligned_cols=209 Identities=22% Similarity=0.270 Sum_probs=172.6
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCC--
Q 041382 180 HPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTS-- 257 (600)
Q Consensus 180 ~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~-- 257 (600)
.+.+|++++|.+.+++.|.+.+..++.+++.|..+|.++++++|||||||||||++|+++|++++.+++.++|+.+.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999877642
Q ss_pred ----hhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEec
Q 041382 258 ----DSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTT 331 (600)
Q Consensus 258 ----~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TT 331 (600)
...++.+|..+ ..|+||||||||.+.+ .|... ........++.||..|++.... ..++||+||
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~--~~~~~-------~~~~~~~~~~~LL~~ld~~~~~--~~v~vIaaT 347 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAP--KREKT-------HGEVERRIVSQLLTLMDGLKQR--AHVIVMAAT 347 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCB--CTTSC-------CCHHHHHHHHHHHHHHHHSCTT--SCEEEEEEE
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhcc--ccccc-------cchHHHHHHHHHHHHhhccccC--CceEEEEec
Confidence 24566777665 4689999999999975 33211 1233467888999999987544 459999999
Q ss_pred CCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhh-hcCCCHHHHHHHHH
Q 041382 332 NYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLME-KVKVSPAEVAGELM 399 (600)
Q Consensus 332 N~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~-~~~~t~a~i~~~l~ 399 (600)
|+++.||++++|+|||+..|+++.|+.++|.+|++.++..........+..+.. ..+++++++...+.
T Consensus 348 n~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~ 416 (489)
T 3hu3_A 348 NRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCS 416 (489)
T ss_dssp SCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHH
Confidence 999999999999999999999999999999999999987544332222333433 24699999987764
No 16
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.95 E-value=1e-26 Score=242.78 Aligned_cols=222 Identities=18% Similarity=0.192 Sum_probs=175.9
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT 256 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~ 256 (600)
...++.+|++++|.+++|+.|.+.+..++..+..|.. +..+++|+|||||||||||++|+++|++++.+++.++++.+.
T Consensus 10 ~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~ 88 (322)
T 3eie_A 10 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 88 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred ecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHh
Confidence 4567789999999999999999999999999988877 445677999999999999999999999999999999987764
Q ss_pred C------hhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEE
Q 041382 257 S------DSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITV 328 (600)
Q Consensus 257 ~------~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI 328 (600)
+ ...++.+|..+ ..|+||||||||.+.+ .|... .........+.|+..|++.... ..+++||
T Consensus 89 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~--~~~~~-------~~~~~~~~~~~ll~~l~~~~~~-~~~v~vi 158 (322)
T 3eie_A 89 SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTG--TRGEG-------ESEASRRIKTELLVQMNGVGND-SQGVLVL 158 (322)
T ss_dssp TTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSC--C-------------CCTHHHHHHHHHHHGGGGTS-CCCEEEE
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhc--cCCCC-------cchHHHHHHHHHHHHhcccccc-CCceEEE
Confidence 2 24466666554 4789999999999965 33211 2234567789999999998533 2469999
Q ss_pred EecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCc-cHHHHHHHhhhc-CCCHHHHHHHHHhcCCHHH
Q 041382 329 FTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHD-LYCHIEKLMEKV-KVSPAEVAGELMKAKGSKT 406 (600)
Q Consensus 329 ~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~-~~~~i~~l~~~~-~~t~a~i~~~l~~~~~~~~ 406 (600)
+|||+++.||++++| ||+..|+++.|+.++|.+|++.++...... ....+..+.... ++++++|...+- ++
T Consensus 159 ~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~-----~a 231 (322)
T 3eie_A 159 GATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVK-----DA 231 (322)
T ss_dssp EEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHH-----HH
T ss_pred EecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH-----HH
Confidence 999999999999999 999999999999999999999999865543 344555555543 699999998774 44
Q ss_pred HHHHHHHHHH
Q 041382 407 SLEDFITYLE 416 (600)
Q Consensus 407 al~~l~~~l~ 416 (600)
++..+.+...
T Consensus 232 ~~~a~r~~~~ 241 (322)
T 3eie_A 232 LMQPIRKIQS 241 (322)
T ss_dssp TTHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 4455554443
No 17
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.94 E-value=1.6e-26 Score=232.60 Aligned_cols=212 Identities=25% Similarity=0.314 Sum_probs=154.6
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCC--
Q 041382 180 HPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTS-- 257 (600)
Q Consensus 180 ~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~-- 257 (600)
++.+|++++|.+++|+.+.+.+. ++..+..|...|.+.++++|||||||||||++|+++|++++.+++.++++.+.+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVD-YLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHH-HHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH-HHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 35789999999999999988775 477888999999999999999999999999999999999999999999987752
Q ss_pred ----hhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEec
Q 041382 258 ----DSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTT 331 (600)
Q Consensus 258 ----~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TT 331 (600)
...++.+|..+ ..|+||||||+|.+.. .|..... ..........+..+++.+++.... ..+++|+||
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~--~~~~~~~---~~~~~~~~~~l~~ll~~~~~~~~~--~~~~vi~~t 152 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGK--KRSTTMS---GFSNTEEEQTLNQLLVEMDGMGTT--DHVIVLAST 152 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC------------------------CHHHHHHHHHHHTCCTT--CCEEEEEEE
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhc--ccccccc---CccchhHHHHHHHHHHHhhCcCCC--CCEEEEecC
Confidence 24456666655 3689999999999965 3321110 011233456788999999987543 459999999
Q ss_pred CCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHH--HHHHhhh-cCCCHHHHHHHHH
Q 041382 332 NYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCH--IEKLMEK-VKVSPAEVAGELM 399 (600)
Q Consensus 332 N~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~--i~~l~~~-~~~t~a~i~~~l~ 399 (600)
|.++.+|++++|||||+..+++++|+.++|.+|++.++.......... ...+... .+++++++...+.
T Consensus 153 n~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~ 223 (262)
T 2qz4_A 153 NRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICN 223 (262)
T ss_dssp SCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred CChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999987654433322 2334333 3689999987763
No 18
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.94 E-value=3.3e-26 Score=242.22 Aligned_cols=220 Identities=18% Similarity=0.197 Sum_probs=171.3
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT 256 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~ 256 (600)
...++.+|++|+|.+++++.|.+.+..++..+..|.. +..+++|+|||||||||||++|+++|++++.+++.++++.+.
T Consensus 43 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~ 121 (355)
T 2qp9_X 43 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 121 (355)
T ss_dssp ----CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHh
Confidence 3456789999999999999999999999999988876 556778999999999999999999999999999999987653
Q ss_pred ------ChhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEE
Q 041382 257 ------SDSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITV 328 (600)
Q Consensus 257 ------~~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI 328 (600)
....++.+|..+ ..|+||||||||.+.+ .|... .........++||..|+++... ...++||
T Consensus 122 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~--~r~~~-------~~~~~~~~~~~ll~~l~~~~~~-~~~v~vI 191 (355)
T 2qp9_X 122 SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTG--TRGEG-------ESEASRRIKTELLVQMNGVGND-SQGVLVL 191 (355)
T ss_dssp SCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC---------------CTHHHHHHHHHHHHHHHCC----CCEEEE
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcc--cCCCC-------cchHHHHHHHHHHHHhhccccc-CCCeEEE
Confidence 345566777655 4799999999999965 33211 1234566788999999987542 2459999
Q ss_pred EecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCc-cHHHHHHHhhhc-CCCHHHHHHHHHhcCCHHH
Q 041382 329 FTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHD-LYCHIEKLMEKV-KVSPAEVAGELMKAKGSKT 406 (600)
Q Consensus 329 ~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~-~~~~i~~l~~~~-~~t~a~i~~~l~~~~~~~~ 406 (600)
+|||+++.||++++| ||+..|++++|+.++|.+|++.++...... ....+..+.... ++++++|...+- ++
T Consensus 192 ~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~-----~A 264 (355)
T 2qp9_X 192 GATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVK-----DA 264 (355)
T ss_dssp EEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHH-----HH
T ss_pred eecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH-----HH
Confidence 999999999999999 999999999999999999999999765432 234455555443 699999998874 44
Q ss_pred HHHHHHHH
Q 041382 407 SLEDFITY 414 (600)
Q Consensus 407 al~~l~~~ 414 (600)
++..+.+.
T Consensus 265 ~~~a~~~~ 272 (355)
T 2qp9_X 265 LMQPIRKI 272 (355)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 19
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.93 E-value=1.5e-25 Score=243.96 Aligned_cols=222 Identities=18% Similarity=0.196 Sum_probs=173.8
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc-CCcEEEEecCcc
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM-NYDIYNLNLSVV 255 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l-~~~~~~l~~~~~ 255 (600)
...++.+|++|+|.+++++.|.+.+..++.++..|.. +..+++|+|||||||||||++|+++|+++ +.+++.++++.+
T Consensus 126 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l 204 (444)
T 2zan_A 126 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 204 (444)
T ss_dssp CCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC--
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHH
Confidence 3456789999999999999999999999998888874 34566899999999999999999999999 899999999877
Q ss_pred CC------hhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEE
Q 041382 256 TS------DSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKIT 327 (600)
Q Consensus 256 ~~------~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ii 327 (600)
.+ ...++.+|..+ ..|+||||||||.+.+ .|... ........++.||..|+++... ..+++|
T Consensus 205 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~--~~~~~-------~~~~~~~~~~~lL~~l~~~~~~-~~~v~v 274 (444)
T 2zan_A 205 VSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCG--SRSEN-------ESEAARRIKTEFLVQMQGVGVD-NDGILV 274 (444)
T ss_dssp -------CCCTHHHHHHHHHHSCSEEEEESCTTTTCC--CSSCC-------CCGGGHHHHHHHHTTTTCSSCC-CSSCEE
T ss_pred HhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcc--CCCCc-------cccHHHHHHHHHHHHHhCcccC-CCCEEE
Confidence 52 34566666654 4799999999999865 33211 1234567889999999997532 246999
Q ss_pred EEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCc-cHHHHHHHhhh-cCCCHHHHHHHHHhcCCHH
Q 041382 328 VFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHD-LYCHIEKLMEK-VKVSPAEVAGELMKAKGSK 405 (600)
Q Consensus 328 I~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~-~~~~i~~l~~~-~~~t~a~i~~~l~~~~~~~ 405 (600)
|+|||+++.|||+|+| ||+..|+++.|+.++|..|++.++...... ....+..+... .++|+++|...+- +
T Consensus 275 I~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~-----~ 347 (444)
T 2zan_A 275 LGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVR-----D 347 (444)
T ss_dssp EEEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHH-----H
T ss_pred EecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH-----H
Confidence 9999999999999999 999999999999999999999998765432 23445555543 3699999998874 5
Q ss_pred HHHHHHHHHHH
Q 041382 406 TSLEDFITYLE 416 (600)
Q Consensus 406 ~al~~l~~~l~ 416 (600)
+++..+.+...
T Consensus 348 a~~~a~r~~~~ 358 (444)
T 2zan_A 348 ALMQPVRKVQS 358 (444)
T ss_dssp HHTHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 55555555543
No 20
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.93 E-value=3.1e-25 Score=243.44 Aligned_cols=231 Identities=23% Similarity=0.287 Sum_probs=176.9
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCC--
Q 041382 180 HPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTS-- 257 (600)
Q Consensus 180 ~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~-- 257 (600)
++.+|++|+|.+++|..+.+.+. ++.++..|..+|...++|+||+||||||||+|++++|++++.+++.++++++..
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~-~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHH-HHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHH-HhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 67899999999999999988765 567788899999999999999999999999999999999999999999987752
Q ss_pred ----hhHHHHHHhhCC--CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEec
Q 041382 258 ----DSSLEYLLLHVP--NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTT 331 (600)
Q Consensus 258 ----~~~l~~~~~~~~--~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TT 331 (600)
...++.+|..+. .|+|+||||||.+.. .|..... ........+++++|..|+|.... ..++++++|
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~--~r~~~~~----~~~~e~~~~l~~LL~~Ldg~~~~--~~viviAat 176 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGR--KRGSGVG----GGNDEREQTLNQLLVEMDGFEKD--TAIVVMAAT 176 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCC--CSSSSTT----TSSHHHHHHHHHHHHHGGGCCSS--CCCEEEECC
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHH--hhccCcC----CCcHHHHHHHHHHHHHhcccccC--ccEEEEEec
Confidence 245778888774 589999999999864 3321100 11223457889999999988543 458999999
Q ss_pred CCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhhh-cCCCHHHHHHHHHhc-------CC
Q 041382 332 NYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLMEK-VKVSPAEVAGELMKA-------KG 403 (600)
Q Consensus 332 N~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~~-~~~t~a~i~~~l~~~-------~~ 403 (600)
|+|+.|||+++||||||++|+++.|+.++|.+|++.++..........+..+... .+++++|+.+.+-.. ..
T Consensus 177 n~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~ 256 (499)
T 2dhr_A 177 NRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGR 256 (499)
T ss_dssp SCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCC
T ss_pred CChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999988765332222223333332 368999998876311 11
Q ss_pred HHHHHHHHHHHHHhhh
Q 041382 404 SKTSLEDFITYLESKE 419 (600)
Q Consensus 404 ~~~al~~l~~~l~~~~ 419 (600)
.....+++.+++....
T Consensus 257 ~~It~~dl~~al~~v~ 272 (499)
T 2dhr_A 257 RKITMKDLEEAADRVM 272 (499)
T ss_dssp SSCCSHHHHHHHHHHT
T ss_pred CccCHHHHHHHHHHHh
Confidence 2233456666665543
No 21
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.92 E-value=2.8e-24 Score=216.16 Aligned_cols=214 Identities=23% Similarity=0.280 Sum_probs=162.9
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT 256 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~ 256 (600)
...++.+|++++|.++.+..+.+.... +..+..+...+...++|++|+||||||||++++++|+.++.+++.+++..+.
T Consensus 8 ~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~ 86 (254)
T 1ixz_A 8 TEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 86 (254)
T ss_dssp CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHH
Confidence 445667999999999999999876654 5678889999999999999999999999999999999999999999876542
Q ss_pred ------ChhHHHHHHhhCC--CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEE
Q 041382 257 ------SDSSLEYLLLHVP--NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITV 328 (600)
Q Consensus 257 ------~~~~l~~~~~~~~--~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI 328 (600)
....+..+|.... .|+++++||||.+.. .+..... .........++.++..|+|.... ..++++
T Consensus 87 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~--~~~~~~~----~~~~~~~~~~~~ll~~l~g~~~~--~~~i~~ 158 (254)
T 1ixz_A 87 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGR--KRGSGVG----GGNDEREQTLNQLLVEMDGFEKD--TAIVVM 158 (254)
T ss_dssp HSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------------CHHHHHHHHHHHHHHHTCCTT--CCEEEE
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhc--ccCcccc----ccchHHHHHHHHHHHHHhCCCCC--CCEEEE
Confidence 1244666777653 589999999999864 2211100 01123356778899999987543 348899
Q ss_pred EecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhhh-cCCCHHHHHHHHH
Q 041382 329 FTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLMEK-VKVSPAEVAGELM 399 (600)
Q Consensus 329 ~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~~-~~~t~a~i~~~l~ 399 (600)
++||+|+.||++++|||||+..|+++.|+.++|.+|++.+...........+..+... .+++++|+...+.
T Consensus 159 a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~ 230 (254)
T 1ixz_A 159 AATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLN 230 (254)
T ss_dssp EEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred EccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999988764332222223333332 3689999988774
No 22
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.92 E-value=3.3e-26 Score=231.89 Aligned_cols=213 Identities=24% Similarity=0.339 Sum_probs=158.7
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCC-
Q 041382 179 DHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTS- 257 (600)
Q Consensus 179 ~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~- 257 (600)
.++.+|++++|.+++++.+.+.+. ++..++.|...|...++|+|||||||||||++|+++|+.++.+++.++++.+.+
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHH-HHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHH-HHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 456789999999999999998765 578899999999999999999999999999999999999999999999877642
Q ss_pred -----hhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEe
Q 041382 258 -----DSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFT 330 (600)
Q Consensus 258 -----~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~T 330 (600)
...++.+|..+ ..|+||||||+|.+.. .|...... .........++.|++.+++.... ...+++|+|
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~--~~~~~~~~---~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vi~t 157 (268)
T 2r62_A 84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGK--SRAAGGVV---SGNDEREQTLNQLLAEMDGFGSE-NAPVIVLAA 157 (268)
T ss_dssp CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC---------------CCCSCSSTTTTTTTTTCSSCS-CSCCEEEEC
T ss_pred hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcc--cccccccC---CCchhHHHHHHHHHHHhhCcccC-CCCEEEEEe
Confidence 22233344333 4689999999999965 22111100 01112233456788888876432 245899999
Q ss_pred cCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhhh-cCCCHHHHHHHH
Q 041382 331 TNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLMEK-VKVSPAEVAGEL 398 (600)
Q Consensus 331 TN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~~-~~~t~a~i~~~l 398 (600)
||.++.+|++++|+|||+..|+++.|+.++|.++++.++..........+..+... .+++++++...+
T Consensus 158 tn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~ 226 (268)
T 2r62_A 158 TNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANII 226 (268)
T ss_dssp BSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHH
T ss_pred cCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999875432211112223222 358888888765
No 23
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.92 E-value=3.6e-24 Score=229.25 Aligned_cols=211 Identities=21% Similarity=0.257 Sum_probs=165.3
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT 256 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~ 256 (600)
...+|.+|++++|.+.+++.|.+.+..+..++..|...+. +++++|||||||||||++|+++|++++.+++.++++.+.
T Consensus 107 ~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~ 185 (389)
T 3vfd_A 107 DNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRA-PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLT 185 (389)
T ss_dssp CCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGC-CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-
T ss_pred ccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCC-CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhh
Confidence 5678899999999999999999999999988888887774 467999999999999999999999999999999998875
Q ss_pred C------hhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEE
Q 041382 257 S------DSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITV 328 (600)
Q Consensus 257 ~------~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI 328 (600)
+ ...++.+|..+ ..|+||||||||.++. .+.. ............|+..+++........++||
T Consensus 186 ~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~--~~~~-------~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI 256 (389)
T 3vfd_A 186 SKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLC--ERRE-------GEHDASRRLKTEFLIEFDGVQSAGDDRVLVM 256 (389)
T ss_dssp ------CHHHHHHHHHHHHHSSSEEEEEETGGGGC-----------------CTHHHHHHHHHHHHHHHC-----CEEEE
T ss_pred ccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcc--cCCC-------ccchHHHHHHHHHHHHhhcccccCCCCEEEE
Confidence 3 34455666554 4789999999999965 2221 1234466788899999998876555679999
Q ss_pred EecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCcc-HHHHHHHhhh-cCCCHHHHHHHHH
Q 041382 329 FTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDL-YCHIEKLMEK-VKVSPAEVAGELM 399 (600)
Q Consensus 329 ~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~-~~~i~~l~~~-~~~t~a~i~~~l~ 399 (600)
+|||.++.||++++| ||+..|+++.|+.++|..|++.++....... ...+..+... .+++++++...+.
T Consensus 257 ~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 257 GATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp EEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999 9999999999999999999999987654433 2344444433 3688888877653
No 24
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.92 E-value=5.6e-24 Score=225.25 Aligned_cols=210 Identities=20% Similarity=0.263 Sum_probs=164.7
Q ss_pred CCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCC
Q 041382 178 LDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTS 257 (600)
Q Consensus 178 ~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~ 257 (600)
..+|.+|++++|.+++++.|.+.+..++..+..|...+ .+++++|||||||||||++|+++|+.++.+++.++++.+.+
T Consensus 77 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~ 155 (357)
T 3d8b_A 77 HGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 155 (357)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhc
Confidence 34678999999999999999999999888888887665 45679999999999999999999999999999999988753
Q ss_pred ------hhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEE
Q 041382 258 ------DSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVF 329 (600)
Q Consensus 258 ------~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~ 329 (600)
...++.+|..+ ..|+||||||||.+.+ .|.. +........++.||..+++.....+..++||+
T Consensus 156 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~--~~~~-------~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~ 226 (357)
T 3d8b_A 156 KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLS--QRGD-------GEHESSRRIKTEFLVQLDGATTSSEDRILVVG 226 (357)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTB--C-------------CHHHHHHHHHHHHHHC----CCCCEEEEE
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhc--cCCC-------CcchHHHHHHHHHHHHHhcccccCCCCEEEEE
Confidence 23455555544 4689999999999965 3221 12234567788999999988655456799999
Q ss_pred ecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCcc-HHHHHHHhhh-cCCCHHHHHHHHH
Q 041382 330 TTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDL-YCHIEKLMEK-VKVSPAEVAGELM 399 (600)
Q Consensus 330 TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~-~~~i~~l~~~-~~~t~a~i~~~l~ 399 (600)
|||.++.||++++| ||+..++++.|+.++|.+++..++....... ...+..+... .+++++++...+-
T Consensus 227 atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 227 ATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred ecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999999 9999999999999999999998886543332 3344455443 3689999987763
No 25
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.91 E-value=9.9e-24 Score=216.83 Aligned_cols=211 Identities=20% Similarity=0.260 Sum_probs=162.6
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT 256 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~ 256 (600)
...++.+|++++|.+++++.+.+.+..+..+++.|...+ .+++++||+||||||||++|+++|+.++.+++.++++.+.
T Consensus 13 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 91 (297)
T 3b9p_A 13 EGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLT 91 (297)
T ss_dssp CCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTS
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHh
Confidence 445788999999999999999999999888888887766 3467999999999999999999999999999999998775
Q ss_pred C------hhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCcccc-CCCeeEE
Q 041382 257 S------DSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCC-CGDEKIT 327 (600)
Q Consensus 257 ~------~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~-~~~~~ii 327 (600)
+ ...++.+|..+ ..|+||||||+|.+.+ .+... .........+.|+..+++.... .+..++|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~--~~~~~-------~~~~~~~~~~~ll~~l~~~~~~~~~~~v~v 162 (297)
T 3b9p_A 92 SKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLS--ERSSS-------EHEASRRLKTEFLVEFDGLPGNPDGDRIVV 162 (297)
T ss_dssp SSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSB--CC------------CCSHHHHHHHHHHHHHCC------CEEE
T ss_pred hcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhcc--ccccC-------cchHHHHHHHHHHHHHhcccccCCCCcEEE
Confidence 2 23445555443 4799999999999975 22211 1233456778899999887543 2245899
Q ss_pred EEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCcc-HHHHHHHhhh-cCCCHHHHHHHHH
Q 041382 328 VFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDL-YCHIEKLMEK-VKVSPAEVAGELM 399 (600)
Q Consensus 328 I~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~-~~~i~~l~~~-~~~t~a~i~~~l~ 399 (600)
|+|||.++.+|++++| ||+..++++.|+.++|..|++.++....... ...+..+... .+++++++...+-
T Consensus 163 i~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 163 LAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAK 234 (297)
T ss_dssp EEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999999999999 9999999999999999999999887544332 2334444433 3688888887653
No 26
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.91 E-value=3.9e-23 Score=210.94 Aligned_cols=214 Identities=23% Similarity=0.292 Sum_probs=161.9
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT 256 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~ 256 (600)
...++.+|++++|.+++++++.+... ++..+..+..++...++|++|+||||||||++++++|+.++.+++.+++..+.
T Consensus 32 ~~~~~~~~~~i~g~~~~~~~l~~l~~-~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~ 110 (278)
T 1iy2_A 32 TEAPKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 110 (278)
T ss_dssp CCCCCCCGGGSSSCHHHHHHHHHHHH-HHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHH-HHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHH
Confidence 34467899999999999999987665 45678889999999999999999999999999999999999999999876543
Q ss_pred ------ChhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEE
Q 041382 257 ------SDSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITV 328 (600)
Q Consensus 257 ------~~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI 328 (600)
....+..+|... ..|+++++||+|.+.. .+..... .........+..++..++|.... ..++++
T Consensus 111 ~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~--~~~~~~~----~~~~~~~~~~~~ll~~lsgg~~~--~~~i~~ 182 (278)
T 1iy2_A 111 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGR--KRGSGVG----GGNDEREQTLNQLLVEMDGFEKD--TAIVVM 182 (278)
T ss_dssp HSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHC--C------------CHHHHHHHHHHHHHHTTCCTT--CCEEEE
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhc--ccccccC----CcchHHHHHHHHHHHHHhCCCCC--CCEEEE
Confidence 123456667665 4689999999999864 2211100 01122356778899999987543 348889
Q ss_pred EecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhhh-cCCCHHHHHHHHH
Q 041382 329 FTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLMEK-VKVSPAEVAGELM 399 (600)
Q Consensus 329 ~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~~-~~~t~a~i~~~l~ 399 (600)
++||+|+.|||+++|||||+..|+++.|+.++|.+|++.++..........+..+... .+++++||...+.
T Consensus 183 a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~ 254 (278)
T 1iy2_A 183 AATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLN 254 (278)
T ss_dssp EEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred EecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999988764332222223333332 3688899887764
No 27
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.90 E-value=1.6e-26 Score=268.53 Aligned_cols=223 Identities=21% Similarity=0.264 Sum_probs=171.8
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC--
Q 041382 179 DHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT-- 256 (600)
Q Consensus 179 ~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~-- 256 (600)
.+..+|++++|.+++|+.+.+.+..++.++..|...|..+++++|||||||||||++|+++|+.++.+++.++++.+.
T Consensus 471 ~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~ 550 (806)
T 1ypw_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTC
T ss_pred CccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhh
Confidence 345789999999999999999988888888888899999999999999999999999999999999999999988864
Q ss_pred ----ChhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEe
Q 041382 257 ----SDSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFT 330 (600)
Q Consensus 257 ----~~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~T 330 (600)
....++.+|..+ ..||||||||||.+.. .|.+..+ ........+++.||+.||+.... .+++||+|
T Consensus 551 ~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~--~r~~~~~----~~~~~~~~v~~~LL~~ld~~~~~--~~v~vI~t 622 (806)
T 1ypw_A 551 WFGESEANVREIFDKARQAAPCVLFFDELDSIAK--ARGGNIG----DGGGAADRVINQILTEMDGMSTK--KNVFIIGA 622 (806)
T ss_dssp CTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCC--TTTTCCS----HHHHHHHHHHHHHHTTCC--------CCBCCCC
T ss_pred hcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhh--hccCCCC----CcchhHHHHHHHHHHHHhccccc--CCeEEEEe
Confidence 345677788776 3689999999999975 3322111 11224567889999999998654 45999999
Q ss_pred cCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhh-hcCCCHHHHHHHHHhcCCHHHHHH
Q 041382 331 TNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLME-KVKVSPAEVAGELMKAKGSKTSLE 409 (600)
Q Consensus 331 TN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~-~~~~t~a~i~~~l~~~~~~~~al~ 409 (600)
||+++.||||++|||||+..|++++|+.++|.+|++.++..........+..+.. ..++|+++|...+. ++++.
T Consensus 623 TN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~-----~a~~~ 697 (806)
T 1ypw_A 623 TNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQ-----RACKL 697 (806)
T ss_dssp CBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHH-----HHHHH
T ss_pred cCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHH-----HHHHH
Confidence 9999999999999999999999999999999999999886543221112222322 23699999998774 44444
Q ss_pred HHHHH
Q 041382 410 DFITY 414 (600)
Q Consensus 410 ~l~~~ 414 (600)
++.+.
T Consensus 698 a~~~~ 702 (806)
T 1ypw_A 698 AIRES 702 (806)
T ss_dssp HHSCC
T ss_pred HHHHH
Confidence 44433
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.90 E-value=2.4e-24 Score=250.17 Aligned_cols=301 Identities=20% Similarity=0.243 Sum_probs=207.7
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCC-
Q 041382 179 DHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTS- 257 (600)
Q Consensus 179 ~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~- 257 (600)
..+.+|++|+|.+++++.|.+.+..++.+++.|..++..+++++|||||||||||++++++|+.++.+++.+++..+.+
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh
Confidence 3467999999999999999999999999999999999999999999999999999999999999999999999877643
Q ss_pred -----hhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEe
Q 041382 258 -----DSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFT 330 (600)
Q Consensus 258 -----~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~T 330 (600)
...+..+|..+ ..|+|+||||||.+.+ +|... .........+.|+..+++.... ..+++|+|
T Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~--~~~~~-------~~~~~~~~~~~Ll~ll~g~~~~--~~v~vI~a 346 (806)
T 1ypw_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAP--KREKT-------HGEVERRIVSQLLTLMDGLKQR--AHVIVMAA 346 (806)
T ss_dssp STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSC--TTSCC-------CSHHHHHHHHHHHHHHHSSCTT--SCCEEEEE
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhh--ccccc-------cchHHHHHHHHHHHHhhhhccc--ccEEEecc
Confidence 24566667665 3689999999999975 32211 1223456788899999998654 45899999
Q ss_pred cCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhh-hcCCCHHHHHHHHHhcCCHHHHHH
Q 041382 331 TNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLME-KVKVSPAEVAGELMKAKGSKTSLE 409 (600)
Q Consensus 331 TN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~-~~~~t~a~i~~~l~~~~~~~~al~ 409 (600)
||+++.+|+++.|+|||+..|.++.|+.++|.+|++.+...........+..+.. ..+++++++...+. ++++.
T Consensus 347 tn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~-----ea~~~ 421 (806)
T 1ypw_A 347 TNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCS-----EAALQ 421 (806)
T ss_dssp CSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHH-----HHHHH
T ss_pred cCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHH-----HHHHH
Confidence 9999999999999999999999999999999999998876543322222333333 34688998877653 33333
Q ss_pred HHHHHHHhhhccccccC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCcc-hhhHHHHHHHH
Q 041382 410 DFITYLESKESQEEKSS--TAPPLASNVDGNRPEPQENGNNISKSGVQDQSSHTETEAADMGNVGGYS-VKAEFANIIKA 486 (600)
Q Consensus 410 ~l~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~~~s~~~~~~~~~v~v~g~~-v~~~~~~~v~~ 486 (600)
.+.+............. .........+ +....... ..++.. ...........|.++.|++ ++..+.+.+.+
T Consensus 422 a~r~~~~~i~~~~~~~~~~~~~~~~v~~~--d~~~al~~--~~~s~~--~~~~~~~~~v~~~di~gl~~vk~~l~~~v~~ 495 (806)
T 1ypw_A 422 AIRKKMDLIDLEDETIDAEVMNSLAVTMD--DFRWALSQ--SNPSAL--RETVVEVPQVTWEDIGGLEDVKRELQELVQY 495 (806)
T ss_dssp HHHHTTTTTSCHHHHCCHHHHTTCCCCTT--HHHHHHHH--SCCCCC--CCCCCCCCCCSSCSSSCCCCHHHHHHTTTTS
T ss_pred HHhhhccccchhhhccchhhhhhhhhhhh--hhhccccc--cCchhh--hhhcccCccccccccccchhhhhhHHHHHHh
Confidence 33322111000000000 0000000000 00000000 000000 0011112246788999999 99999999988
Q ss_pred HHhhhhHHHhcCccch
Q 041382 487 IFSKHGDIAANSCLQS 502 (600)
Q Consensus 487 ~~~k~~di~~~~~~~~ 502 (600)
+ .+||+.+.++....
T Consensus 496 ~-~~~~~~~~~~~~~~ 510 (806)
T 1ypw_A 496 P-VEHPDKFLKFGMTP 510 (806)
T ss_dssp S-SSSCTTTTCCCCCC
T ss_pred h-hhchHHHHhcCCCC
Confidence 8 78888888776543
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.90 E-value=9.5e-24 Score=217.51 Aligned_cols=171 Identities=15% Similarity=0.087 Sum_probs=122.5
Q ss_pred HhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCC------hhHHHHHHhhC------CCcceeeecchh
Q 041382 213 KIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTS------DSSLEYLLLHV------PNRSILVVEDID 280 (600)
Q Consensus 213 ~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~------~~~l~~~~~~~------~~~sIL~iDeiD 280 (600)
..+.++|+|+|||||||||||++|+++|++++.+++.++++.+.+ ...++..|..+ ..||||||||||
T Consensus 30 ~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD 109 (293)
T 3t15_A 30 LPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLD 109 (293)
T ss_dssp CTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechh
Confidence 346778899999999999999999999999999999999887653 24466666554 379999999999
Q ss_pred hhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCcc---------ccCCCeeEEEEecCCcCcCCHHHHhcCCcceEE
Q 041382 281 CSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLL---------CCCGDEKITVFTTNYKDRIDPALLRAGRMDRHI 351 (600)
Q Consensus 281 ~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~---------~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I 351 (600)
.+.+ .+.+.. ......+...+.|++.||+.. .....+++||+|||+++.||++|+|||||+.+|
T Consensus 110 ~~~~--~~~~~~-----~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i 182 (293)
T 3t15_A 110 AGAG--RMGGTT-----QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFY 182 (293)
T ss_dssp ---------------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEE
T ss_pred hhcC--CCCCCc-----cccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeE
Confidence 9875 222111 112244566788999988543 112245899999999999999999999999999
Q ss_pred EeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhhhcCCCHHHHH
Q 041382 352 NLSYCTFSTFKQLAANYLDINDHDLYCHIEKLMEKVKVSPAEVA 395 (600)
Q Consensus 352 ~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~~~~~t~a~i~ 395 (600)
++ |+.++|.+|++.++.... .....+..+... ++++++.
T Consensus 183 ~~--P~~~~r~~Il~~~~~~~~-~~~~~l~~~~~~--~~~~~l~ 221 (293)
T 3t15_A 183 WA--PTREDRIGVCTGIFRTDN-VPAEDVVKIVDN--FPGQSID 221 (293)
T ss_dssp EC--CCHHHHHHHHHHHHGGGC-CCHHHHHHHHHH--SCSCCHH
T ss_pred eC--cCHHHHHHHHHHhccCCC-CCHHHHHHHhCC--CCcccHH
Confidence 74 699999999998887533 334556666555 6666664
No 30
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.80 E-value=3e-18 Score=179.08 Aligned_cols=172 Identities=14% Similarity=0.163 Sum_probs=136.6
Q ss_pred cccccccccCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEE
Q 041382 169 DRWSSSGVNLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIY 248 (600)
Q Consensus 169 ~~w~~~~v~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~ 248 (600)
..|. ....|.+|++++|.+..++.+...+...... .....++||+||||||||++|+++|+.++.+++
T Consensus 17 ~~~~----~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~--------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~ 84 (338)
T 3pfi_A 17 ETYE----TSLRPSNFDGYIGQESIKKNLNVFIAAAKKR--------NECLDHILFSGPAGLGKTTLANIISYEMSANIK 84 (338)
T ss_dssp ----------CCCCSGGGCCSCHHHHHHHHHHHHHHHHT--------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEE
T ss_pred hhhh----hccCCCCHHHhCChHHHHHHHHHHHHHHHhc--------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeE
Confidence 4576 5678889999999999999998887655331 134458999999999999999999999999999
Q ss_pred EEecCccCChhHHHHHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccc---------
Q 041382 249 NLNLSVVTSDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLC--------- 319 (600)
Q Consensus 249 ~l~~~~~~~~~~l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~--------- 319 (600)
.+++..+.....+...+.....+++|||||||.+.. .....|+..++...-
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~--------------------~~~~~Ll~~l~~~~~~~~~~~~~~ 144 (338)
T 3pfi_A 85 TTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSP--------------------AIEEVLYPAMEDYRLDIIIGSGPA 144 (338)
T ss_dssp EEEGGGCCSHHHHHHHHHTCCTTCEEEEETGGGCCH--------------------HHHHHHHHHHHTSCC---------
T ss_pred EecchhccchhHHHHHHHhccCCCEEEEechhhcCH--------------------HHHHHHHHHHHhccchhhcccCcc
Confidence 999998888888888888888999999999998732 244556666654310
Q ss_pred -----cCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCC
Q 041382 320 -----CCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDH 374 (600)
Q Consensus 320 -----~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~ 374 (600)
.....+++|++||....++++|++ ||+..|++++|+.+++..+++.++.....
T Consensus 145 ~~~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~ 202 (338)
T 3pfi_A 145 AQTIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNK 202 (338)
T ss_dssp CCCCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTC
T ss_pred ccceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCC
Confidence 000137899999999999999999 99999999999999999999988765443
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.79 E-value=2.7e-20 Score=203.30 Aligned_cols=178 Identities=15% Similarity=0.075 Sum_probs=124.3
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcC--CcEEEEecCccCC
Q 041382 180 HPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMN--YDIYNLNLSVVTS 257 (600)
Q Consensus 180 ~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~--~~~~~l~~~~~~~ 257 (600)
+...|++++|.+++++.+...+..+. .|..+++|+|||||||||||++|+++|++++ .+++.++++.+.+
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~~~--------~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVELIK--------SKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHHH--------TTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred hhhchhhccCHHHHHHHHHHHHHHHH--------hCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 34568999999999999887764332 3566778999999999999999999999999 9999999988763
Q ss_pred h-----hHHHHHHhhC-----CCcceeeecchhhhhhhhccccCCCCCCCCC------------CCChHHHHHHHHHhhc
Q 041382 258 D-----SSLEYLLLHV-----PNRSILVVEDIDCSIKLQNRESQKGDEPADS------------YRGPQVTLAGLLNAID 315 (600)
Q Consensus 258 ~-----~~l~~~~~~~-----~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~------------~~~~~~~ls~lL~~ld 315 (600)
. ..++..|..+ ..||||||||+|++++ +|.....+..... ........+.++..++
T Consensus 104 ~~~~~~~~~~~~f~~a~~~~~~~~~il~iDEid~l~~--~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~ 181 (456)
T 2c9o_A 104 TEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTP--CETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQ 181 (456)
T ss_dssp SSSCHHHHHHHHHHHTEEEEEEEEEEEEEEEEEEEEE--C--------------CEEEEEEETTEEEEEEECHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHhhhhcCCcEEEEechhhccc--ccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHh
Confidence 2 3377788776 4799999999999986 4432211000000 0001122334666665
Q ss_pred CccccCCCeeEEEEecCCcCcCCHHHHhcCCcce--EEEeCCCC--HHHHHHHHHH
Q 041382 316 GLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDR--HINLSYCT--FSTFKQLAAN 367 (600)
Q Consensus 316 g~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~--~I~~~~p~--~e~r~~il~~ 367 (600)
......++.++|++|||+++.+|+++.||||||. .+.+|.|+ .++|++|++.
T Consensus 182 ~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~ 237 (456)
T 2c9o_A 182 KERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQD 237 (456)
T ss_dssp HTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEE
T ss_pred hccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHH
Confidence 3222334456666899999999999999999998 56667774 4667666553
No 32
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.76 E-value=2.7e-19 Score=192.78 Aligned_cols=163 Identities=17% Similarity=0.160 Sum_probs=73.3
Q ss_pred ccccChhHHHHHHHHHHHHHhCHHHHHHhCC-CCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCC-------
Q 041382 186 TLVMDGDLKETVLNDLDCFRRGKEYYRKIGK-VWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTS------- 257 (600)
Q Consensus 186 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~-~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~------- 257 (600)
.|+|+++.|+.+...+..+..++..+...+. .+++++||+||||||||++|+++|+.++.+++.++++.+.+
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d 95 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeecc
Confidence 6899999999999888776655554444433 35689999999999999999999999999999999866532
Q ss_pred -hhHHHHHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEe-cCCcC
Q 041382 258 -DSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFT-TNYKD 335 (600)
Q Consensus 258 -~~~l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~T-TN~~~ 335 (600)
...++.+|..+ ..++++|++|.+.+ . . .......+++.||+.|||+.+... + +++ ||+++
T Consensus 96 ~e~~lr~lf~~a--~~~~~~De~d~~~~---~--~-------~~~~e~rvl~~LL~~~dg~~~~~~--v--~a~~TN~~~ 157 (444)
T 1g41_A 96 VDSIIRDLTDSA--MKLVRQQEIAKNRA---R--A-------EDVAEERILDALLPPAKNQWGEVE--N--HDSHSSTRQ 157 (444)
T ss_dssp THHHHHHHHHHH--HHHHHHHHHHSCC-----------------------------------------------------
T ss_pred HHHHHHHHHHHH--Hhcchhhhhhhhhc---c--c-------hhhHHHHHHHHHHHHhhccccccc--c--ccccccCHH
Confidence 34566666554 23456888887642 1 0 112345789999999999965432 2 454 99999
Q ss_pred cCCHHHHhcCCcceEEEeCCCCHH-HHHHHHH
Q 041382 336 RIDPALLRAGRMDRHINLSYCTFS-TFKQLAA 366 (600)
Q Consensus 336 ~Ld~aLlrpgRfd~~I~~~~p~~e-~r~~il~ 366 (600)
.|||||+||||||++|+++.|+.. .|.+|+.
T Consensus 158 ~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~ 189 (444)
T 1g41_A 158 AFRKKLREGQLDDKEIEIDVSAGVSMGVEIMA 189 (444)
T ss_dssp --------------------------------
T ss_pred HHHHHHHcCCCcceEEEEcCCCCccchhhhhc
Confidence 999999999999999999999998 6777754
No 33
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.75 E-value=1.9e-17 Score=170.58 Aligned_cols=174 Identities=14% Similarity=0.209 Sum_probs=133.3
Q ss_pred ccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCC---cceeeeCCCCCCHHHHHHHHHHHc-------CCcEEEEecCcc
Q 041382 186 TLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWK---RGYLLYGPPGTGKSSLIAAMANYM-------NYDIYNLNLSVV 255 (600)
Q Consensus 186 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~---rgiLL~GppGtGKTsla~alA~~l-------~~~~~~l~~~~~ 255 (600)
+++|.+++|+.|.+.+..+.. +..+...|...+ .++|||||||||||++|+++|+.+ +.+++.++++.+
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 699999999999998877654 666777775543 369999999999999999999988 348999998877
Q ss_pred CC------hhHHHHHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEE
Q 041382 256 TS------DSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVF 329 (600)
Q Consensus 256 ~~------~~~l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~ 329 (600)
.+ ...+..+|..+ .++||||||+|.+.+ .+. ........++.|++.|+.. ..++++|+
T Consensus 111 ~~~~~g~~~~~~~~~~~~~-~~~vl~iDEid~l~~--~~~---------~~~~~~~~~~~Ll~~l~~~----~~~~~~i~ 174 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA-MGGVLFIDEAYYLYR--PDN---------ERDYGQEAIEILLQVMENN----RDDLVVIL 174 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH-TTSEEEEETGGGSCC--CC------------CCTHHHHHHHHHHHHHC----TTTCEEEE
T ss_pred hhhcccccHHHHHHHHHhc-CCCEEEEEChhhhcc--CCC---------cccccHHHHHHHHHHHhcC----CCCEEEEE
Confidence 53 23455666555 578999999999864 211 1123456778888888853 23578889
Q ss_pred ecCCcC-----cCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHH
Q 041382 330 TTNYKD-----RIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYC 378 (600)
Q Consensus 330 TTN~~~-----~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~ 378 (600)
|||..+ .++|+|++ ||+.+|+|++|+.+++..|++.++.........
T Consensus 175 ~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~ 226 (309)
T 3syl_A 175 AGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTP 226 (309)
T ss_dssp EECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECH
T ss_pred eCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCH
Confidence 998653 35899999 999999999999999999999998765544333
No 34
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.74 E-value=4.5e-17 Score=168.73 Aligned_cols=166 Identities=19% Similarity=0.199 Sum_probs=131.4
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT 256 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~ 256 (600)
....|.+|++++|.+..++.+...+..... .+ ..++++||+||||||||++|+++|+.++.+++.++++.+.
T Consensus 4 ~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~-------~~-~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 75 (324)
T 1hqc_A 4 LALRPKTLDEYIGQERLKQKLRVYLEAAKA-------RK-EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIE 75 (324)
T ss_dssp -CCCCCSTTTCCSCHHHHHHHHHHHHHHHH-------HC-SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCC
T ss_pred cccCcccHHHhhCHHHHHHHHHHHHHHHHc-------cC-CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccC
Confidence 345788999999999999988887765432 11 2346899999999999999999999999999999999888
Q ss_pred ChhHHHHHHhh-CCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccc--------------cC
Q 041382 257 SDSSLEYLLLH-VPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLC--------------CC 321 (600)
Q Consensus 257 ~~~~l~~~~~~-~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~--------------~~ 321 (600)
....+...+.. ...+++|||||||.+.. .....|+..++...- ..
T Consensus 76 ~~~~l~~~l~~~~~~~~~l~lDEi~~l~~--------------------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~ 135 (324)
T 1hqc_A 76 KPGDLAAILANSLEEGDILFIDEIHRLSR--------------------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLE 135 (324)
T ss_dssp SHHHHHHHHTTTCCTTCEEEETTTTSCCH--------------------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEE
T ss_pred ChHHHHHHHHHhccCCCEEEEECCccccc--------------------chHHHHHHHHHhhhhHHhccccccccccccC
Confidence 87888888877 57889999999998742 123445555543210 00
Q ss_pred CCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcC
Q 041382 322 GDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIN 372 (600)
Q Consensus 322 ~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~ 372 (600)
..++++|+|||.++.++++|.+ ||+..+.+++|+.+++..++..++...
T Consensus 136 ~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~ 184 (324)
T 1hqc_A 136 LPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLL 184 (324)
T ss_dssp CCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhc
Confidence 1247899999999999999999 999899999999999999999887543
No 35
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.72 E-value=1.5e-16 Score=163.41 Aligned_cols=172 Identities=19% Similarity=0.254 Sum_probs=122.2
Q ss_pred ccccChhHHHHHHHHHHHHHhCHHHHHHh-CCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCC-------
Q 041382 186 TLVMDGDLKETVLNDLDCFRRGKEYYRKI-GKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTS------- 257 (600)
Q Consensus 186 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~-g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~------- 257 (600)
.++|.+++++.+...+............. +...+.++||+||||||||++|+++|+.++.+++.++++.+.+
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~ 95 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence 48999999999998886643322111111 1124568999999999999999999999999999999987653
Q ss_pred -hhHHHHHHhhC-------CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCcccc------CCC
Q 041382 258 -DSSLEYLLLHV-------PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCC------CGD 323 (600)
Q Consensus 258 -~~~l~~~~~~~-------~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~------~~~ 323 (600)
...+..++... ..++||||||+|.+.. .+... ..........+.|+..+++.... ...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~--~~~~~------~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~ 167 (310)
T 1ofh_A 96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICK--KGEYS------GADVSREGVQRDLLPLVEGSTVSTKHGMVKTD 167 (310)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSC--CSSCC------SSHHHHHHHHHHHHHHHHCCEEEETTEEEECT
T ss_pred HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCc--ccccc------ccchhHHHHHHHHHHHhcCCeEecccccccCC
Confidence 23466666543 2479999999999854 11100 01111222356778888764210 113
Q ss_pred eeEEEEe----cCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHH
Q 041382 324 EKITVFT----TNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAAN 367 (600)
Q Consensus 324 ~~iiI~T----TN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~ 367 (600)
.+++|+| ++.+..++|+|++ ||+..|+|++|+.+++.+|++.
T Consensus 168 ~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 168 HILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTE 213 (310)
T ss_dssp TCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHS
T ss_pred cEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHh
Confidence 4778887 5688899999999 9999999999999999999984
No 36
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.72 E-value=3.7e-18 Score=186.90 Aligned_cols=268 Identities=12% Similarity=0.129 Sum_probs=172.3
Q ss_pred CCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc----------CCcE
Q 041382 178 LDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM----------NYDI 247 (600)
Q Consensus 178 ~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l----------~~~~ 247 (600)
...|..|++++|.++.++.+...+.. ..+.++||+||||||||++|+++|+.+ +.++
T Consensus 173 ~~r~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~ 239 (468)
T 3pxg_A 173 IAKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV 239 (468)
T ss_dssp HTTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCE
T ss_pred HHhcCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeE
Confidence 45677899999999999888776632 234589999999999999999999997 7889
Q ss_pred EEEecCccC-C--hhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCC
Q 041382 248 YNLNLSVVT-S--DSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCG 322 (600)
Q Consensus 248 ~~l~~~~~~-~--~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~ 322 (600)
+.++++.-. + ...++.+|... ..++||||| .. . ...+.|+..|+ .
T Consensus 240 ~~l~~~~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~~------~-------------~a~~~L~~~L~----~-- 289 (468)
T 3pxg_A 240 MTLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA------I-------------DASNILKPSLA----R-- 289 (468)
T ss_dssp ECC----------CTTHHHHHHHHHTCCCCEEEEC-----C---------------------------CCCTT----S--
T ss_pred EEeeCCccccchHHHHHHHHHHHHHhcCCeEEEEe-----Cc------h-------------hHHHHHHHhhc----C--
Confidence 999887211 1 23455666544 368999999 11 0 01122333333 1
Q ss_pred CeeEEEEecCCcC-----cCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhhhcCCCHHHHHHH
Q 041382 323 DEKITVFTTNYKD-----RIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLMEKVKVSPAEVAGE 397 (600)
Q Consensus 323 ~~~iiI~TTN~~~-----~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~~~~~t~a~i~~~ 397 (600)
+.+.+|++||.++ .+|++|.| ||. .|.|++|+.+++..|++.++...... ....+++..+...
T Consensus 290 g~v~vI~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~---------~~~~i~~~al~~l 357 (468)
T 3pxg_A 290 GELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAH---------HRVSITDDAIEAA 357 (468)
T ss_dssp SSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGG---------SSCSCCHHHHHHH
T ss_pred CCEEEEecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHh---------cCCCCCHHHHHHH
Confidence 3588999999887 68999999 997 59999999999999999887653210 0012232222222
Q ss_pred HH-------hcCCHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q 041382 398 LM-------KAKGSKTSLEDFITYLESKESQEEKSSTAPPLASNVDGNRPEPQENGNNISKSGVQDQSSHTETEAADMGN 470 (600)
Q Consensus 398 l~-------~~~~~~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~~~s~~~~~~~~~v~ 470 (600)
.. ...-|+.+++.+.++....+.......... .+.+ ..... . ..+....+.
T Consensus 358 ~~~s~~~~~~~~lp~~ai~ll~~a~~~~~~~~~~~p~~i--------~~l~----------~~i~~---l-~~~~~~~~~ 415 (468)
T 3pxg_A 358 VKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNL--------KELE----------QKLDE---V-RKEKDAAVQ 415 (468)
T ss_dssp HHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTTSCCSST--------HHHH----------HHHHH---H-HHHHHHHHH
T ss_pred HHHHHHHhccCcCCcHHHHHHHHHHHHHHhccCCCchHH--------HHHH----------HHHHH---H-HHHHHHHHh
Confidence 11 012366777777776655443222111000 0000 00000 0 001122355
Q ss_pred CCCcchhhHHHHHHHHHHhhhhHHHhcCccchhhHHHHHHHH-HHHHHHHHhc
Q 041382 471 VGGYSVKAEFANIIKAIFSKHGDIAANSCLQSKQCRSSLLEI-VCRIIQKLQK 522 (600)
Q Consensus 471 v~g~~v~~~~~~~v~~~~~k~~di~~~~~~~~~~~r~~~~~~-l~~vi~~l~~ 522 (600)
.++|+-++.+++....+..+.......|..++...+..+++. |++||+.++|
T Consensus 416 ~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (468)
T 3pxg_A 416 SQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVDDIAMVVSSWTG 468 (468)
T ss_dssp HCCSHHHHHHHHHHHHHHHHHHHHHSGGGHHHHHHTTCCCTHHHHHHHHTTC-
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHhC
Confidence 788999999999999999999999999998887767777777 9999999886
No 37
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.71 E-value=1.3e-16 Score=165.73 Aligned_cols=196 Identities=17% Similarity=0.166 Sum_probs=139.8
Q ss_pred cccccccccCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEE
Q 041382 169 DRWSSSGVNLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIY 248 (600)
Q Consensus 169 ~~w~~~~v~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~ 248 (600)
..|. ....|.+|++++|.++.++.+...+. .| ..+..+|++||||||||++++++|+.++.+++
T Consensus 14 ~~~~----~k~rP~~~~~ivg~~~~~~~l~~~l~-----------~~-~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~ 77 (324)
T 3u61_B 14 HILE----QKYRPSTIDECILPAFDKETFKSITS-----------KG-KIPHIILHSPSPGTGKTTVAKALCHDVNADMM 77 (324)
T ss_dssp SSHH----HHSCCCSTTTSCCCHHHHHHHHHHHH-----------TT-CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEE
T ss_pred chHH----HhhCCCCHHHHhCcHHHHHHHHHHHH-----------cC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEE
Confidence 4576 66789999999999999888877664 12 33457899999999999999999999999999
Q ss_pred EEecCccCChhHHHHHHhh----CC---CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccC
Q 041382 249 NLNLSVVTSDSSLEYLLLH----VP---NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCC 321 (600)
Q Consensus 249 ~l~~~~~~~~~~l~~~~~~----~~---~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~ 321 (600)
.++++... ...++..+.. .+ .+.||||||+|.+.+ ....+.|+..++...
T Consensus 78 ~i~~~~~~-~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~-------------------~~~~~~L~~~le~~~--- 134 (324)
T 3u61_B 78 FVNGSDCK-IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL-------------------AESQRHLRSFMEAYS--- 134 (324)
T ss_dssp EEETTTCC-HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG-------------------HHHHHHHHHHHHHHG---
T ss_pred EEcccccC-HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc-------------------HHHHHHHHHHHHhCC---
Confidence 99987754 4444443322 22 678999999998841 123455666666432
Q ss_pred CCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhh--hcCCCHHHHHHHHH
Q 041382 322 GDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLME--KVKVSPAEVAGELM 399 (600)
Q Consensus 322 ~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~--~~~~t~a~i~~~l~ 399 (600)
..+.+|+|||.+..++++|.+ ||. .++|++|+.+++.+|+..++.. +...+. ...+++.++.+.+.
T Consensus 135 -~~~~iI~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~--------l~~~~~~~~~~~~~~~~~~~l~ 202 (324)
T 3u61_B 135 -SNCSIIITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRR--------LTEICKHEGIAIADMKVVAALV 202 (324)
T ss_dssp -GGCEEEEEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHH--------HHHHHHHHTCCBSCHHHHHHHH
T ss_pred -CCcEEEEEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHH--------HHHHHHHcCCCCCcHHHHHHHH
Confidence 347888999999999999999 994 7999999999998888876532 222222 23455524444443
Q ss_pred h--cCCHHHHHHHHHHHH
Q 041382 400 K--AKGSKTSLEDFITYL 415 (600)
Q Consensus 400 ~--~~~~~~al~~l~~~l 415 (600)
. .++...++..+..+.
T Consensus 203 ~~~~gd~R~a~~~L~~~~ 220 (324)
T 3u61_B 203 KKNFPDFRKTIGELDSYS 220 (324)
T ss_dssp HHTCSCTTHHHHHHHHHG
T ss_pred HhCCCCHHHHHHHHHHHh
Confidence 3 245656666665554
No 38
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.68 E-value=1.2e-15 Score=154.59 Aligned_cols=167 Identities=19% Similarity=0.212 Sum_probs=115.9
Q ss_pred cccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC-C------
Q 041382 185 GTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT-S------ 257 (600)
Q Consensus 185 ~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~-~------ 257 (600)
+.++|.....+.+......+. ..+...+..+++++|||||||||||++|+++|+.++.+++.+++++.. +
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~---~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLV---QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHH---HHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHH---HHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 456777776666665422221 223334556778999999999999999999999999999999876532 1
Q ss_pred hhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcC
Q 041382 258 DSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKD 335 (600)
Q Consensus 258 ~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~ 335 (600)
...++.+|..+ ..++||||||||.+++ .+.. ........+..|+..+++... .+..+++|+|||.++
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~--~~~~--------~~~~~~~~l~~L~~~~~~~~~-~~~~~~ii~ttn~~~ 178 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLD--YVPI--------GPRFSNLVLQALLVLLKKAPP-QGRKLLIIGTTSRKD 178 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTT--CBTT--------TTBCCHHHHHHHHHHTTCCCS-TTCEEEEEEEESCHH
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhc--cCCC--------ChhHHHHHHHHHHHHhcCccC-CCCCEEEEEecCChh
Confidence 13455666653 4689999999999975 2211 112234556666677776532 335688999999999
Q ss_pred cCCH-HHHhcCCcceEEEeCCCCH-HHHHHHHHH
Q 041382 336 RIDP-ALLRAGRMDRHINLSYCTF-STFKQLAAN 367 (600)
Q Consensus 336 ~Ld~-aLlrpgRfd~~I~~~~p~~-e~r~~il~~ 367 (600)
.+++ .+.+ ||+..|++|+++. ++...++..
T Consensus 179 ~l~~~~l~~--rf~~~i~~p~l~~r~~i~~i~~~ 210 (272)
T 1d2n_A 179 VLQEMEMLN--AFSTTIHVPNIATGEQLLEALEL 210 (272)
T ss_dssp HHHHTTCTT--TSSEEEECCCEEEHHHHHHHHHH
T ss_pred hcchhhhhc--ccceEEcCCCccHHHHHHHHHHh
Confidence 8888 5555 9999999988776 555555554
No 39
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.68 E-value=6.7e-16 Score=149.35 Aligned_cols=155 Identities=16% Similarity=0.181 Sum_probs=117.9
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc-----CCcEEEEe
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM-----NYDIYNLN 251 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l-----~~~~~~l~ 251 (600)
....|.+|++++|.++.++.+.+.+.. + ...++||+||||||||++++++|+.+ ...++.++
T Consensus 9 ~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 75 (226)
T 2chg_A 9 EKYRPRTLDEVVGQDEVIQRLKGYVER-----------K--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN 75 (226)
T ss_dssp HHTSCSSGGGCCSCHHHHHHHHHHHHT-----------T--CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE
T ss_pred HhcCCCCHHHHcCcHHHHHHHHHHHhC-----------C--CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEec
Confidence 556789999999999988888776632 1 12359999999999999999999986 45688888
Q ss_pred cCccCChhHHHHHHhh--------CCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCC
Q 041382 252 LSVVTSDSSLEYLLLH--------VPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGD 323 (600)
Q Consensus 252 ~~~~~~~~~l~~~~~~--------~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~ 323 (600)
++...+...+...+.. ...+.||+|||+|.+.. .....|+..++.. ..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------------------~~~~~l~~~l~~~----~~ 131 (226)
T 2chg_A 76 ASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA--------------------DAQAALRRTMEMY----SK 131 (226)
T ss_dssp TTCTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH--------------------HHHHHHHHHHHHT----TT
T ss_pred cccccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH--------------------HHHHHHHHHHHhc----CC
Confidence 8776655444433222 14689999999998743 1334455555543 23
Q ss_pred eeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCc
Q 041382 324 EKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDI 371 (600)
Q Consensus 324 ~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~ 371 (600)
+..+|+|||.++.+++++.+ ||. .+++++|+.++...++..++..
T Consensus 132 ~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~ 176 (226)
T 2chg_A 132 SCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEK 176 (226)
T ss_dssp TEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHH
Confidence 47888999999999999999 997 9999999999999999877643
No 40
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.68 E-value=3.2e-17 Score=189.80 Aligned_cols=291 Identities=13% Similarity=0.144 Sum_probs=177.6
Q ss_pred CCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc----------CCcE
Q 041382 178 LDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM----------NYDI 247 (600)
Q Consensus 178 ~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l----------~~~~ 247 (600)
...|..|++++|.++.++.+...+.. ..+.++|||||||||||++|+++|+.+ +.++
T Consensus 173 ~~~~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~ 239 (758)
T 3pxi_A 173 IAKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV 239 (758)
T ss_dssp HTTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCE
T ss_pred HHhhCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeE
Confidence 34677899999999999988876532 334589999999999999999999997 8889
Q ss_pred EEEecCcc-C--ChhHHHHHHhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCC
Q 041382 248 YNLNLSVV-T--SDSSLEYLLLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCG 322 (600)
Q Consensus 248 ~~l~~~~~-~--~~~~l~~~~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~ 322 (600)
+.+++..- . ....++.+|..+ ..|+||||| .. . ...+.|+..|+ .
T Consensus 240 ~~~~~g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~~------~-------------~~~~~L~~~l~------~ 289 (758)
T 3pxi_A 240 MTLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA------I-------------DASNILKPSLA------R 289 (758)
T ss_dssp ECC----------CTTHHHHHHHHHTCCCCEEEEC-----C---------------------------CCCTT------S
T ss_pred EEecccccccchHHHHHHHHHHHHHhcCCEEEEEc-----Cc------h-------------hHHHHHHHHHh------c
Confidence 98887221 1 123566666544 468999999 11 0 01122333333 2
Q ss_pred CeeEEEEecCCcC-----cCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhhhcCCCHHHHHHH
Q 041382 323 DEKITVFTTNYKD-----RIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLMEKVKVSPAEVAGE 397 (600)
Q Consensus 323 ~~~iiI~TTN~~~-----~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~~~~~t~a~i~~~ 397 (600)
+++.+|+|||..+ .+||+|.| || ..|.|+.|+.+++.+|++.+....... ....+++..+...
T Consensus 290 ~~v~~I~at~~~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~~~~---------~~~~i~~~al~~~ 357 (758)
T 3pxi_A 290 GELQCIGATTLDEYRKYIEKDAALER--RF-QPIQVDQPSVDESIQILQGLRDRYEAH---------HRVSITDDAIEAA 357 (758)
T ss_dssp SSCEEEEECCTTTTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHHHHHTTTTSGGG---------SSCSCCHHHHHHH
T ss_pred CCEEEEeCCChHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHh---------cCCCCCHHHHHHH
Confidence 3588999999888 79999999 99 569999999999999999877653110 0111222222221
Q ss_pred H------H-hcCCHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q 041382 398 L------M-KAKGSKTSLEDFITYLESKESQEEKSSTAPPLASNVDGNRPEPQENGNNISKSGVQDQSSHTETEAADMGN 470 (600)
Q Consensus 398 l------~-~~~~~~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~~~s~~~~~~~~~v~ 470 (600)
. + ...-|+.+++-+.++............... ...+ .... .-..+....+.
T Consensus 358 ~~~s~~~i~~~~~p~~ai~ll~~a~~~~~~~~~~~p~~~--------~~l~----------~~~~----~~~~~~~~~~~ 415 (758)
T 3pxi_A 358 VKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNL--------KELE----------QKLD----EVRKEKDAAVQ 415 (758)
T ss_dssp HHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTTC--CCT--------HHHH----------HHHH----HHHHHHHHHHH
T ss_pred HHHhhcccccCcCCcHHHHHHHHHHHHHHhhccCCCcch--------hhHH----------HHHH----HHHHHHHHHHh
Confidence 1 0 112356666666666554433222100000 0000 0000 00000112233
Q ss_pred CCCcchhhHHHHHHHHHHhhhhHHHhcCccchhhHHHHHHHH-HHHHHHHHhccccccccHHHHHHHHHHHHHHHh
Q 041382 471 VGGYSVKAEFANIIKAIFSKHGDIAANSCLQSKQCRSSLLEI-VCRIIQKLQKAKLKDLKETELKSMLSELQDLES 545 (600)
Q Consensus 471 v~g~~v~~~~~~~v~~~~~k~~di~~~~~~~~~~~r~~~~~~-l~~vi~~l~~~p~~~ls~~el~~~~~~~~~L~~ 545 (600)
-+.|+.++.+++.+..+..+..++...|.......+..+... |..+|+.++++|+..+.+++..++.++...|.+
T Consensus 416 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~i~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~ 491 (758)
T 3pxi_A 416 SQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHS 491 (758)
T ss_dssp HCCSHHHHHHHHHHHHHHHHHHHHHSGGGHHHHCC---CCTHHHHHHHHTTC-------CHHHHSCC-CHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcccCHHHHHHHHHHHhCCChHHhhHHHHHHHHHHHHHHhC
Confidence 467888889999999998999999999988776666655555 999999999999999999998888777777664
No 41
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.67 E-value=7.4e-16 Score=162.57 Aligned_cols=185 Identities=17% Similarity=0.116 Sum_probs=125.4
Q ss_pred CCCCC-ccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC--cEEEEecCcc
Q 041382 179 DHPMT-FGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY--DIYNLNLSVV 255 (600)
Q Consensus 179 ~~p~~-f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~--~~~~l~~~~~ 255 (600)
..|.. |++++|.+..++.+...+.... .|..+++++|||||||||||++|+++|+.++. +++.+++..+
T Consensus 37 ~~p~~~~~~ivG~~~~~~~l~~l~~~~~--------~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 108 (368)
T 3uk6_A 37 LEPRQASQGMVGQLAARRAAGVVLEMIR--------EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEI 108 (368)
T ss_dssp SCBCSEETTEESCHHHHHHHHHHHHHHH--------TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGG
T ss_pred cCcCcchhhccChHHHHHHHHHHHHHHH--------cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhh
Confidence 34555 9999999999887665443322 24455679999999999999999999999974 7777776542
Q ss_pred CC-------------------------------------------------------hhHHHHHHhhC-----------C
Q 041382 256 TS-------------------------------------------------------DSSLEYLLLHV-----------P 269 (600)
Q Consensus 256 ~~-------------------------------------------------------~~~l~~~~~~~-----------~ 269 (600)
.+ ...++..+... .
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~ 188 (368)
T 3uk6_A 109 FSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEI 188 (368)
T ss_dssp SCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---
T ss_pred hhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccc
Confidence 11 12233333221 1
Q ss_pred CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEec-----------CCcCcCC
Q 041382 270 NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTT-----------NYKDRID 338 (600)
Q Consensus 270 ~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TT-----------N~~~~Ld 338 (600)
.|+||||||+|.+.. ...+.|+..++... ..+++++|. |.+..++
T Consensus 189 ~~~vl~IDEi~~l~~--------------------~~~~~L~~~le~~~----~~~~ii~t~~~~~~i~~t~~~~~~~l~ 244 (368)
T 3uk6_A 189 IPGVLFIDEVHMLDI--------------------ESFSFLNRALESDM----APVLIMATNRGITRIRGTSYQSPHGIP 244 (368)
T ss_dssp CBCEEEEESGGGSBH--------------------HHHHHHHHHTTCTT----CCEEEEEESCSEEECBTSSCEEETTCC
T ss_pred cCceEEEhhccccCh--------------------HHHHHHHHHhhCcC----CCeeeeecccceeeeeccCCCCcccCC
Confidence 268999999998732 34566777765432 235444443 3588899
Q ss_pred HHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcCCCccH-HHHHHHhhhcC-CCHHHHHHHH
Q 041382 339 PALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLY-CHIEKLMEKVK-VSPAEVAGEL 398 (600)
Q Consensus 339 ~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~-~~i~~l~~~~~-~t~a~i~~~l 398 (600)
++|++ ||.. |+|++|+.+++.++++.++........ +.+..+..... -+++++...+
T Consensus 245 ~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 245 IDLLD--RLLI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp HHHHT--TEEE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHh--hccE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 99999 9965 899999999999999988765443333 33334444333 5667666655
No 42
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.67 E-value=2.9e-17 Score=173.86 Aligned_cols=173 Identities=16% Similarity=0.226 Sum_probs=117.8
Q ss_pred cccChhHHHHHHHHHHHHHhCHHHHHH-hCC-CCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCC-------
Q 041382 187 LVMDGDLKETVLNDLDCFRRGKEYYRK-IGK-VWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTS------- 257 (600)
Q Consensus 187 l~g~~~~k~~i~~~l~~~l~~~~~y~~-~g~-~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~------- 257 (600)
|+|.+.+++.+...+............ .+. .+++++||+||||||||++|+++|+.++.+++.++++.+..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 699999999999888654432110000 111 24679999999999999999999999999999999987652
Q ss_pred -hhHHHHHHhhC------CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCcccc----------
Q 041382 258 -DSSLEYLLLHV------PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCC---------- 320 (600)
Q Consensus 258 -~~~l~~~~~~~------~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~---------- 320 (600)
...+..++... ..++||||||||.+.. .|..... +.........+.||..|+|....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~--~~~~~~~----~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~ 170 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISR--KSDNPSI----TRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHP 170 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCC--CSSCC-------CHHHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcc--ccccccc----ccccchHHHHHHHHHHhcCceeeccCccccccC
Confidence 23345555544 3578999999999864 3221110 01111233788899999854210
Q ss_pred -------CCCeeEEEEecCCc----------Cc-----------------------------------CCHHHHhcCCcc
Q 041382 321 -------CGDEKITVFTTNYK----------DR-----------------------------------IDPALLRAGRMD 348 (600)
Q Consensus 321 -------~~~~~iiI~TTN~~----------~~-----------------------------------Ld~aLlrpgRfd 348 (600)
...++++|+|+|.. .. +.|+|+. ||+
T Consensus 171 ~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~ 248 (363)
T 3hws_A 171 QQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLP 248 (363)
T ss_dssp ---CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCC
T ss_pred CCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccC
Confidence 11234455555431 11 7899998 999
Q ss_pred eEEEeCCCCHHHHHHHHHH
Q 041382 349 RHINLSYCTFSTFKQLAAN 367 (600)
Q Consensus 349 ~~I~~~~p~~e~r~~il~~ 367 (600)
..+.+++|+.+.+..|+..
T Consensus 249 ~~~~~~pl~~~~~~~I~~~ 267 (363)
T 3hws_A 249 VVATLNELSEEALIQILKE 267 (363)
T ss_dssp EEEECCCCCHHHHHHHHHS
T ss_pred eeeecCCCCHHHHHHHHHH
Confidence 9999999999999999886
No 43
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.65 E-value=1.4e-16 Score=150.61 Aligned_cols=153 Identities=16% Similarity=0.227 Sum_probs=107.8
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc----------CCcEE
Q 041382 179 DHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM----------NYDIY 248 (600)
Q Consensus 179 ~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l----------~~~~~ 248 (600)
..|.+|++++|.++..+.+.+.+.. ..++++||+||||||||++++++|+.+ +.+++
T Consensus 16 ~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (195)
T 1jbk_A 16 AEQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVL 82 (195)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEE
T ss_pred HhhccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEE
Confidence 4577899999999888887765421 234689999999999999999999986 78888
Q ss_pred EEecCccCC--------hhHHHHHHh---hCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCc
Q 041382 249 NLNLSVVTS--------DSSLEYLLL---HVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGL 317 (600)
Q Consensus 249 ~l~~~~~~~--------~~~l~~~~~---~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~ 317 (600)
.+++..+.. ...+..++. ....++||+|||+|.+.+ .+... ........+..++ +.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~--~~~~~-------~~~~~~~~l~~~~---~~- 149 (195)
T 1jbk_A 83 ALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVG--AGKAD-------GAMDAGNMLKPAL---AR- 149 (195)
T ss_dssp EECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT---------------CCCCHHHHHHHH---HT-
T ss_pred EeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhc--cCccc-------chHHHHHHHHHhh---cc-
Confidence 888766531 123344443 345688999999999864 11100 0111222222222 21
Q ss_pred cccCCCeeEEEEecCCcC-----cCCHHHHhcCCcceEEEeCCCCHHHHHHHH
Q 041382 318 LCCCGDEKITVFTTNYKD-----RIDPALLRAGRMDRHINLSYCTFSTFKQLA 365 (600)
Q Consensus 318 ~~~~~~~~iiI~TTN~~~-----~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il 365 (600)
.++.+|+|||.++ .+++++.+ ||+ .|++++|+.+++.+|+
T Consensus 150 -----~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 150 -----GELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp -----TSCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred -----CCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 2477888888776 78999999 997 7999999999998765
No 44
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.65 E-value=7e-15 Score=143.79 Aligned_cols=157 Identities=18% Similarity=0.286 Sum_probs=118.2
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC-----------
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY----------- 245 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~----------- 245 (600)
....|.+|++++|.+..++.+...+.. | ..++.++|+||||||||++++++++.++.
T Consensus 15 ~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~ 82 (250)
T 1njg_A 15 RKWRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 82 (250)
T ss_dssp HHTCCCSGGGCCSCHHHHHHHHHHHHH-----------T-CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSC
T ss_pred hccCCccHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 456788999999999998888776642 1 12347999999999999999999998743
Q ss_pred -------------cEEEEecCccCChhHHHHHHhhCC------CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHH
Q 041382 246 -------------DIYNLNLSVVTSDSSLEYLLLHVP------NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVT 306 (600)
Q Consensus 246 -------------~~~~l~~~~~~~~~~l~~~~~~~~------~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ 306 (600)
.++.++.........++.++.... .+.+|+|||+|.+.. ..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~--------------------~~ 142 (250)
T 1njg_A 83 CDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR--------------------HS 142 (250)
T ss_dssp SHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH--------------------HH
T ss_pred cHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccH--------------------HH
Confidence 344455443333345666665542 578999999998632 24
Q ss_pred HHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcC
Q 041382 307 LAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIN 372 (600)
Q Consensus 307 ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~ 372 (600)
+..|+..++.. ...+.+|+|||.+..+++++.+ |+ ..|++++++.++..+++..++...
T Consensus 143 ~~~l~~~l~~~----~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~ 201 (250)
T 1njg_A 143 FNALLKTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEE 201 (250)
T ss_dssp HHHHHHHHHSC----CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC----CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhc
Confidence 56677777643 2358889999999999999998 76 799999999999999999887543
No 45
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.64 E-value=5.3e-16 Score=171.88 Aligned_cols=174 Identities=18% Similarity=0.224 Sum_probs=121.8
Q ss_pred cccccccccCCCCCCccccccChhHHHHHHHHHHHHHhC-HHHHHHhCC---CCCcceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 169 DRWSSSGVNLDHPMTFGTLVMDGDLKETVLNDLDCFRRG-KEYYRKIGK---VWKRGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 169 ~~w~~~~v~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~-~~~y~~~g~---~~~rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
..|. ....|.+|++++|.++.++.+.+.+..+... +..|...|. ++++++||+||||||||++|+++|++++
T Consensus 27 ~lW~----ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~ 102 (516)
T 1sxj_A 27 KLWT----VKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG 102 (516)
T ss_dssp CCHH----HHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcc----cccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4677 6788999999999999999999888764432 122333333 3567999999999999999999999999
Q ss_pred CcEEEEecCccCChhHHHHHHh-------------h-------CCCcceeeecchhhhhhhhccccCCCCCCCCCCCChH
Q 041382 245 YDIYNLNLSVVTSDSSLEYLLL-------------H-------VPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQ 304 (600)
Q Consensus 245 ~~~~~l~~~~~~~~~~l~~~~~-------------~-------~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~ 304 (600)
.+++.++++...+...+...+. . ...++||||||+|.+.. . ..
T Consensus 103 ~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~--~---------------~~ 165 (516)
T 1sxj_A 103 YDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSG--G---------------DR 165 (516)
T ss_dssp CEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCT--T---------------ST
T ss_pred CCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccch--h---------------hH
Confidence 9999999998876544433322 1 14678999999998853 0 01
Q ss_pred HHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCc
Q 041382 305 VTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDI 371 (600)
Q Consensus 305 ~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~ 371 (600)
..+..|++.++.. +..+|+|+++.....++ .+. |+...|.|+.|+.+++.+++...+..
T Consensus 166 ~~l~~L~~~l~~~----~~~iIli~~~~~~~~l~-~l~---~r~~~i~f~~~~~~~~~~~L~~i~~~ 224 (516)
T 1sxj_A 166 GGVGQLAQFCRKT----STPLILICNERNLPKMR-PFD---RVCLDIQFRRPDANSIKSRLMTIAIR 224 (516)
T ss_dssp THHHHHHHHHHHC----SSCEEEEESCTTSSTTG-GGT---TTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc----CCCEEEEEcCCCCccch-hhH---hceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 1345566655532 12244444444444454 344 44579999999999999988876643
No 46
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.64 E-value=6.5e-16 Score=172.04 Aligned_cols=160 Identities=20% Similarity=0.174 Sum_probs=113.3
Q ss_pred ccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCChh----
Q 041382 184 FGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDS---- 259 (600)
Q Consensus 184 f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~~~---- 259 (600)
.++++|.+++++.+.+.+.....+.. . .+..+||+||||||||++++++|+.++.+++.++++.+....
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~~------~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g 152 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTKS------L-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRG 152 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSSS------C-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC---------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhccc------C-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhh
Confidence 45689999999998776543222111 1 345799999999999999999999999999999987754321
Q ss_pred -----------HHHHHHhhCC-CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCcccc-------
Q 041382 260 -----------SLEYLLLHVP-NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCC------- 320 (600)
Q Consensus 260 -----------~l~~~~~~~~-~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~------- 320 (600)
.+...|..+. ...||||||||.+.. ++.+ ...+.||..||.....
T Consensus 153 ~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~--~~~~--------------~~~~~LL~~ld~~~~~~~~~~~~ 216 (543)
T 3m6a_A 153 HRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSS--DFRG--------------DPSSAMLEVLDPEQNSSFSDHYI 216 (543)
T ss_dssp -----------CHHHHHHTTCSSSEEEEEEESSSCC-------------------------CCGGGTCTTTTTBCCCSSS
T ss_pred HHHHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhh--hhcc--------------CHHHHHHHHHhhhhcceeecccC
Confidence 2233454442 344999999999854 2110 1234577777643211
Q ss_pred ----CCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhc
Q 041382 321 ----CGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYL 369 (600)
Q Consensus 321 ----~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l 369 (600)
.-.++++|+|||.++.+||+|++ ||+ .|+|+.|+.+++..|++.++
T Consensus 217 ~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 217 EETFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp CCCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTH
T ss_pred CeeecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHH
Confidence 01358999999999999999999 995 79999999999999999887
No 47
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.62 E-value=2.8e-15 Score=175.62 Aligned_cols=158 Identities=18% Similarity=0.237 Sum_probs=105.8
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc----------CCcEE
Q 041382 179 DHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM----------NYDIY 248 (600)
Q Consensus 179 ~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l----------~~~~~ 248 (600)
..|.+|++++|.++..+.+.+.+.. ..++++||+||||||||++++++|+.+ +.+++
T Consensus 164 ~r~~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~ 230 (854)
T 1qvr_A 164 AAEGKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIV 230 (854)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEE
T ss_pred HhcCCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEE
Confidence 3577899999999888888776521 234589999999999999999999987 88999
Q ss_pred EEecCccCCh--------hHHHHHHhhC---CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCc
Q 041382 249 NLNLSVVTSD--------SSLEYLLLHV---PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGL 317 (600)
Q Consensus 249 ~l~~~~~~~~--------~~l~~~~~~~---~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~ 317 (600)
.++++.+... ..+..++... ..|+||||||+|.+.+. +... + .....+.|...++.
T Consensus 231 ~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~--~~~~-g---------~~~~~~~L~~~l~~- 297 (854)
T 1qvr_A 231 SLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGA--GKAE-G---------AVDAGNMLKPALAR- 297 (854)
T ss_dssp EECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------------------HHHHHT-
T ss_pred EeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhcc--CCcc-c---------hHHHHHHHHHHHhC-
Confidence 9999887522 2355555544 36899999999999751 1111 0 01112223333321
Q ss_pred cccCCCeeEEEEecCCcC----cCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcC
Q 041382 318 LCCCGDEKITVFTTNYKD----RIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLD 370 (600)
Q Consensus 318 ~~~~~~~~iiI~TTN~~~----~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~ 370 (600)
.++.+|++||.++ .+|++|.| ||+. |.++.|+.+++.+|++.++.
T Consensus 298 -----~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~ 346 (854)
T 1qvr_A 298 -----GELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKE 346 (854)
T ss_dssp -----TCCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHH
T ss_pred -----CCeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhh
Confidence 3477888888765 47999999 9985 99999999999999987664
No 48
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.61 E-value=2.1e-15 Score=155.21 Aligned_cols=156 Identities=16% Similarity=0.197 Sum_probs=116.2
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc-----CCcEEEEe
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM-----NYDIYNLN 251 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l-----~~~~~~l~ 251 (600)
....|.+|++++|.+..++.+...+.. |. .+ ++|||||||||||++++++|+.+ +.+++.++
T Consensus 9 ~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~-~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 75 (319)
T 2chq_A 9 EKYRPRTLDEVVGQDEVIQRLKGYVER-----------KN-IP-HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN 75 (319)
T ss_dssp TTTSCSSGGGSCSCHHHHHHHHTTTTT-----------TC-CC-CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE
T ss_pred HhcCCCCHHHHhCCHHHHHHHHHHHhC-----------CC-CC-eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe
Confidence 678899999999999988877665521 21 22 49999999999999999999987 45678888
Q ss_pred cCccCChhHHH----HHHhhC----CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCC
Q 041382 252 LSVVTSDSSLE----YLLLHV----PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGD 323 (600)
Q Consensus 252 ~~~~~~~~~l~----~~~~~~----~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~ 323 (600)
++...+...++ ...... ..+.|++|||+|.+.. ...+.|+..++.. ..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------------------~~~~~L~~~le~~----~~ 131 (319)
T 2chq_A 76 ASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA--------------------DAQAALRRTMEMY----SK 131 (319)
T ss_dssp TTSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH--------------------HHHHTTGGGTSSS----SS
T ss_pred CccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH--------------------HHHHHHHHHHHhc----CC
Confidence 87654332222 222111 3578999999998742 1234455555543 34
Q ss_pred eeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcC
Q 041382 324 EKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIN 372 (600)
Q Consensus 324 ~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~ 372 (600)
.+++|++||.+..+++++.+ |+. .+.+++|+.+++..++..++...
T Consensus 132 ~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~ 177 (319)
T 2chq_A 132 SCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKE 177 (319)
T ss_dssp SEEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTT
T ss_pred CCeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHc
Confidence 57888999999999999999 885 89999999999999998777543
No 49
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.60 E-value=7.1e-15 Score=170.13 Aligned_cols=159 Identities=22% Similarity=0.307 Sum_probs=113.7
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc----------CCcEE
Q 041382 179 DHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM----------NYDIY 248 (600)
Q Consensus 179 ~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l----------~~~~~ 248 (600)
..|..|++++|.++..+.+++.+. ...+.++||+||||||||++|+++|+.+ +..++
T Consensus 180 ~~~~~~d~~iGr~~~i~~l~~~l~-------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~ 246 (758)
T 1r6b_X 180 ARVGGIDPLIGREKELERAIQVLC-------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIY 246 (758)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHT-------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEE
T ss_pred HhcCCCCCccCCHHHHHHHHHHHh-------------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEE
Confidence 356789999999998888777553 1245689999999999999999999987 66788
Q ss_pred EEecCccCC--------hhHHHHHHhhCC--CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCcc
Q 041382 249 NLNLSVVTS--------DSSLEYLLLHVP--NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLL 318 (600)
Q Consensus 249 ~l~~~~~~~--------~~~l~~~~~~~~--~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~ 318 (600)
.++++.+.. ...++.++.... .++||||||+|.+.+ .+.. ..... . ..+.+..+.
T Consensus 247 ~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~--~~~~---------~~~~~-~---~~~~L~~~l 311 (758)
T 1r6b_X 247 SLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIG--AGAA---------SGGQV-D---AANLIKPLL 311 (758)
T ss_dssp ECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTT--SCCS---------SSCHH-H---HHHHHSSCS
T ss_pred EEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhh--cCCC---------CcchH-H---HHHHHHHHH
Confidence 888766542 245666666554 489999999999975 1110 00111 1 223333333
Q ss_pred ccCCCeeEEEEecCCcC-----cCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcC
Q 041382 319 CCCGDEKITVFTTNYKD-----RIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLD 370 (600)
Q Consensus 319 ~~~~~~~iiI~TTN~~~-----~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~ 370 (600)
.. .++.+|++||.++ .+|++|.| ||+ .|.|+.|+.+++.+|++.+..
T Consensus 312 ~~--~~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~ 363 (758)
T 1r6b_X 312 SS--GKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKP 363 (758)
T ss_dssp SS--CCCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHH
T ss_pred hC--CCeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHH
Confidence 22 3478888888653 57899999 997 799999999999999987654
No 50
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.60 E-value=7.4e-15 Score=151.12 Aligned_cols=161 Identities=16% Similarity=0.247 Sum_probs=116.8
Q ss_pred cccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCChhHH
Q 041382 185 GTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTSDSSL 261 (600)
Q Consensus 185 ~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~~~~l 261 (600)
+.++|.+..++.+...+......-. ....+...+||+||||||||++|+++|+.+ +.+++.++|+.+......
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~----~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLK----DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCS----CTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCC----CCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 3578999999998888765432100 001223479999999999999999999998 567999999887654333
Q ss_pred HHHHh---------------h---CCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCC-
Q 041382 262 EYLLL---------------H---VPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCG- 322 (600)
Q Consensus 262 ~~~~~---------------~---~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~- 322 (600)
..++. . ....+||||||+|.+.. ...+.|+..|+......+
T Consensus 93 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~--------------------~~~~~Ll~~le~~~~~~~~ 152 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP--------------------DVFNILLQMLDDGRLTDSH 152 (311)
T ss_dssp HHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH--------------------HHHHHHHHHHHHSEEECTT
T ss_pred HHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH--------------------HHHHHHHHHHhcCEEEcCC
Confidence 33321 1 12358999999998732 355667777764321110
Q ss_pred ------CeeEEEEecCC--------------------------cCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcC
Q 041382 323 ------DEKITVFTTNY--------------------------KDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLD 370 (600)
Q Consensus 323 ------~~~iiI~TTN~--------------------------~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~ 370 (600)
.+.++|+|||. ...++|+|++ ||+..+.+++|+.+++..|++.++.
T Consensus 153 ~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~ 230 (311)
T 4fcw_A 153 GRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMS 230 (311)
T ss_dssp SCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTH
T ss_pred CCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 25789999998 6688999998 9999999999999999999998875
Q ss_pred c
Q 041382 371 I 371 (600)
Q Consensus 371 ~ 371 (600)
.
T Consensus 231 ~ 231 (311)
T 4fcw_A 231 Y 231 (311)
T ss_dssp H
T ss_pred H
Confidence 3
No 51
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.59 E-value=7.2e-15 Score=159.65 Aligned_cols=152 Identities=20% Similarity=0.300 Sum_probs=113.5
Q ss_pred cCCCCCCccccccChhHH---HHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecC
Q 041382 177 NLDHPMTFGTLVMDGDLK---ETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLS 253 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k---~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~ 253 (600)
....|.+|++++|.+.++ +.+...+.. |. ..++|||||||||||++|+++|+.++.+++.+++.
T Consensus 18 ~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~-----------~~--~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~ 84 (447)
T 3pvs_A 18 ARMRPENLAQYIGQQHLLAAGKPLPRAIEA-----------GH--LHSMILWGPPGTGKTTLAEVIARYANADVERISAV 84 (447)
T ss_dssp HHTCCCSTTTCCSCHHHHSTTSHHHHHHHH-----------TC--CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETT
T ss_pred HHhCCCCHHHhCCcHHHHhchHHHHHHHHc-----------CC--CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEec
Confidence 556789999999999887 555554431 11 14899999999999999999999999999999976
Q ss_pred ccCChhHHHHHHhhC------CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEE
Q 041382 254 VVTSDSSLEYLLLHV------PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKIT 327 (600)
Q Consensus 254 ~~~~~~~l~~~~~~~------~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ii 327 (600)
.. +...++..+..+ ..++||||||||.+.. .....||..++. ..+++
T Consensus 85 ~~-~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~--------------------~~q~~LL~~le~------~~v~l 137 (447)
T 3pvs_A 85 TS-GVKEIREAIERARQNRNAGRRTILFVDEVHRFNK--------------------SQQDAFLPHIED------GTITF 137 (447)
T ss_dssp TC-CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC--------------------------CCHHHHHT------TSCEE
T ss_pred cC-CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH--------------------HHHHHHHHHHhc------CceEE
Confidence 53 345566555443 3689999999998842 012336666664 22556
Q ss_pred EEec--CCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCc
Q 041382 328 VFTT--NYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDI 371 (600)
Q Consensus 328 I~TT--N~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~ 371 (600)
|++| |....++++|++ |+. .+.|++|+.+++..++..++..
T Consensus 138 I~att~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~ 180 (447)
T 3pvs_A 138 IGATTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMED 180 (447)
T ss_dssp EEEESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHC
T ss_pred EecCCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHH
Confidence 6555 555689999999 985 7889999999999999988764
No 52
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.59 E-value=6.9e-15 Score=153.27 Aligned_cols=154 Identities=15% Similarity=0.138 Sum_probs=110.4
Q ss_pred CCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCChhH
Q 041382 181 PMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSS 260 (600)
Q Consensus 181 p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~~~~ 260 (600)
|..+++++|.+++++.+...+.. ++++|||||||||||++|+++|+.++.+++.+++........
T Consensus 23 ~~~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~ 87 (331)
T 2r44_A 23 DEVGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSD 87 (331)
T ss_dssp HHHTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHH
T ss_pred HHhccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhh
Confidence 33467889999988877765532 258999999999999999999999999999998753322222
Q ss_pred HHHH---------HhhCCC---cceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCc-------cccC
Q 041382 261 LEYL---------LLHVPN---RSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGL-------LCCC 321 (600)
Q Consensus 261 l~~~---------~~~~~~---~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~-------~~~~ 321 (600)
+... +..... .+||||||+|.+.+ ...+.|+..|+.. ....
T Consensus 88 l~g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~--------------------~~~~~Ll~~l~~~~~~~~g~~~~~ 147 (331)
T 2r44_A 88 LIGTMIYNQHKGNFEVKKGPVFSNFILADEVNRSPA--------------------KVQSALLECMQEKQVTIGDTTYPL 147 (331)
T ss_dssp HHEEEEEETTTTEEEEEECTTCSSEEEEETGGGSCH--------------------HHHHHHHHHHHHSEEEETTEEEEC
T ss_pred cCCceeecCCCCceEeccCcccccEEEEEccccCCH--------------------HHHHHHHHHHhcCceeeCCEEEEC
Confidence 2110 000112 37999999998632 2445566666421 1112
Q ss_pred CCeeEEEEecCCcC-----cCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCc
Q 041382 322 GDEKITVFTTNYKD-----RIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDI 371 (600)
Q Consensus 322 ~~~~iiI~TTN~~~-----~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~ 371 (600)
+..+++|+|+|..+ .++++|++ ||+.++.+++|+.+++.+|++.....
T Consensus 148 ~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 148 DNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp CSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred CCCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhcccc
Confidence 23477888888543 38999999 99999999999999999999988764
No 53
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.59 E-value=1.7e-14 Score=148.92 Aligned_cols=160 Identities=14% Similarity=0.208 Sum_probs=118.0
Q ss_pred cccccccccCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcC----
Q 041382 169 DRWSSSGVNLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMN---- 244 (600)
Q Consensus 169 ~~w~~~~v~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~---- 244 (600)
..|. ....|.+|++++|.++.++.+...+.. |. . .++|||||||||||++|+++|+.+.
T Consensus 13 ~~~~----~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~-~-~~~ll~G~~G~GKT~la~~l~~~l~~~~~ 75 (327)
T 1iqp_A 13 KPWV----EKYRPQRLDDIVGQEHIVKRLKHYVKT-----------GS-M-PHLLFAGPPGVGKTTAALALARELFGENW 75 (327)
T ss_dssp SCHH----HHTCCCSTTTCCSCHHHHHHHHHHHHH-----------TC-C-CEEEEESCTTSSHHHHHHHHHHHHHGGGH
T ss_pred Cchh----hccCCCCHHHhhCCHHHHHHHHHHHHc-----------CC-C-CeEEEECcCCCCHHHHHHHHHHHhcCCcc
Confidence 3576 567899999999999998888766532 21 1 2599999999999999999999863
Q ss_pred -CcEEEEecCccCChhHHHH----HHhhC----CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhc
Q 041382 245 -YDIYNLNLSVVTSDSSLEY----LLLHV----PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAID 315 (600)
Q Consensus 245 -~~~~~l~~~~~~~~~~l~~----~~~~~----~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ld 315 (600)
.+++.+++++..+...++. ..... ..+.||+|||+|.+.. ...+.|+..++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------------------~~~~~L~~~le 135 (327)
T 1iqp_A 76 RHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQ--------------------DAQQALRRTME 135 (327)
T ss_dssp HHHEEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH--------------------HHHHHHHHHHH
T ss_pred cCceEEeeccccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH--------------------HHHHHHHHHHH
Confidence 3477888765432222222 22111 3578999999998732 23455666666
Q ss_pred CccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCcC
Q 041382 316 GLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIN 372 (600)
Q Consensus 316 g~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~~ 372 (600)
.. ...+.+|+|||.+..+++++.+ |+. .+.|++++.++...++..++...
T Consensus 136 ~~----~~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~ 185 (327)
T 1iqp_A 136 MF----SSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENE 185 (327)
T ss_dssp HT----TTTEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTT
T ss_pred hc----CCCCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhc
Confidence 43 2347788899999999999999 886 89999999999999888776543
No 54
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.58 E-value=3.9e-14 Score=150.41 Aligned_cols=174 Identities=16% Similarity=0.215 Sum_probs=114.8
Q ss_pred ccccChhHHHHHHHHHHHHHhCHHHHH-----------------HhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEE
Q 041382 186 TLVMDGDLKETVLNDLDCFRRGKEYYR-----------------KIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIY 248 (600)
Q Consensus 186 ~l~g~~~~k~~i~~~l~~~l~~~~~y~-----------------~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~ 248 (600)
.|+|++++|+.|...+.....+..... ......+.++||+||||||||++|+++|+.++.+++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 479999999999988754433222100 011234568999999999999999999999999999
Q ss_pred EEecCccCC--------hhHHHHHHhhCC------CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhh
Q 041382 249 NLNLSVVTS--------DSSLEYLLLHVP------NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAI 314 (600)
Q Consensus 249 ~l~~~~~~~--------~~~l~~~~~~~~------~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~l 314 (600)
.+++..+.. ...+..++.... .++||||||+|.+.. .|.+... ..........+.|+..|
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~--~~~~~~~----~~~~~~~~~~~~Ll~~l 175 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISR--LSENRSI----TRDVSGEGVQQALLKIV 175 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------------CHHHHHHHHHHH
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhh--hcCCCce----ecccchHHHHHHHHHHh
Confidence 999987641 223445544332 579999999999864 2211110 11112234677888888
Q ss_pred cCccc-----------------cCCCeeEEEEecCC-----------------------------------------cCc
Q 041382 315 DGLLC-----------------CCGDEKITVFTTNY-----------------------------------------KDR 336 (600)
Q Consensus 315 dg~~~-----------------~~~~~~iiI~TTN~-----------------------------------------~~~ 336 (600)
++..- -...++++|+|||. ...
T Consensus 176 e~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 255 (376)
T 1um8_A 176 EGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYG 255 (376)
T ss_dssp HCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTT
T ss_pred hccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcC
Confidence 86410 00123677777762 123
Q ss_pred CCHHHHhcCCcceEEEeCCCCHHHHHHHHHH
Q 041382 337 IDPALLRAGRMDRHINLSYCTFSTFKQLAAN 367 (600)
Q Consensus 337 Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~ 367 (600)
+.|+|++ ||+..|.|++++.++...|+..
T Consensus 256 ~~p~l~~--R~~~~i~~~~l~~~~l~~i~~~ 284 (376)
T 1um8_A 256 LIPELIG--RLPVLSTLDSISLEAMVDILQK 284 (376)
T ss_dssp CCHHHHT--TCCEEEECCCCCHHHHHHHHHS
T ss_pred CChHHhc--CCCceeeccCCCHHHHHHHHhh
Confidence 6788888 9999999999999999988874
No 55
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.58 E-value=1.7e-14 Score=149.99 Aligned_cols=187 Identities=16% Similarity=0.235 Sum_probs=116.5
Q ss_pred CCCCCCccccc-cChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecC
Q 041382 178 LDHPMTFGTLV-MDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLS 253 (600)
Q Consensus 178 ~~~p~~f~~l~-g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~ 253 (600)
+.+..+|++++ |.... .. ...+......+ + ..+.+++||||||||||++++++|+.+ +.+++.+++.
T Consensus 4 l~~~~~f~~fv~g~~~~-~a-~~~~~~~~~~~------~-~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 4 LNPKYTLENFIVGEGNR-LA-YEVVKEALENL------G-SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CCTTCCSSSCCCCTTTH-HH-HHHHHHHHHTT------T-TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCCCcccCCCCCcHH-HH-HHHHHHHHhCc------C-CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 45667899987 53322 21 12233333221 1 234689999999999999999999998 8999999987
Q ss_pred ccCCh-------hHHHHHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeE
Q 041382 254 VVTSD-------SSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKI 326 (600)
Q Consensus 254 ~~~~~-------~~l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~i 326 (600)
.+... ............+.||||||+|.+.+ + ......++..++..... +.++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~--~----------------~~~~~~l~~~l~~~~~~--~~~i 134 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSG--K----------------ERTQIEFFHIFNTLYLL--EKQI 134 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTT--C----------------HHHHHHHHHHHHHHHHT--TCEE
T ss_pred HHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccC--C----------------hHHHHHHHHHHHHHHHC--CCeE
Confidence 65311 00111112223589999999998843 1 01233444444433322 2356
Q ss_pred EEEecCCcC---cCCHHHHhcCCcc--eEEEeCCCCHHHHHHHHHHhcCcCCCccHHH-HHHHhhhcCCCHHHHHHH
Q 041382 327 TVFTTNYKD---RIDPALLRAGRMD--RHINLSYCTFSTFKQLAANYLDINDHDLYCH-IEKLMEKVKVSPAEVAGE 397 (600)
Q Consensus 327 iI~TTN~~~---~Ld~aLlrpgRfd--~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~-i~~l~~~~~~t~a~i~~~ 397 (600)
|+++++.+. .++++|.+ ||+ ..+++++ +.+++..+++.++........++ +..+.... -..+++.+.
T Consensus 135 ii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r~l~~~ 207 (324)
T 1l8q_A 135 ILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGK 207 (324)
T ss_dssp EEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHH
T ss_pred EEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHHHHHHH
Confidence 666776666 68999999 886 7899999 99999999998876443333322 33333333 344444443
No 56
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.57 E-value=2.1e-14 Score=150.11 Aligned_cols=158 Identities=19% Similarity=0.241 Sum_probs=116.6
Q ss_pred ccccccccCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcC-----
Q 041382 170 RWSSSGVNLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMN----- 244 (600)
Q Consensus 170 ~w~~~~v~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~----- 244 (600)
.|. ....|.+|++++|.+++++.+...+. . |. ..++||+||||||||++++++|+.++
T Consensus 26 ~~~----~k~~p~~~~~i~g~~~~~~~l~~~l~----~-------~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~ 88 (353)
T 1sxj_D 26 PWV----EKYRPKNLDEVTAQDHAVTVLKKTLK----S-------AN--LPHMLFYGPPGTGKTSTILALTKELYGPDLM 88 (353)
T ss_dssp CHH----HHTCCSSTTTCCSCCTTHHHHHHHTT----C-------TT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHH
T ss_pred cHH----HhcCCCCHHHhhCCHHHHHHHHHHHh----c-------CC--CCEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 566 56789999999999999887766542 1 11 12499999999999999999999864
Q ss_pred -CcEEEEecCccCChhHHHHH---Hhh---------------CCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHH
Q 041382 245 -YDIYNLNLSVVTSDSSLEYL---LLH---------------VPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQV 305 (600)
Q Consensus 245 -~~~~~l~~~~~~~~~~l~~~---~~~---------------~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~ 305 (600)
..++.+++++..+...++.. +.. ...+.||+|||+|.+.+ .
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~--------------------~ 148 (353)
T 1sxj_D 89 KSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA--------------------D 148 (353)
T ss_dssp TTSEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH--------------------H
T ss_pred ccceEEEccccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH--------------------H
Confidence 46888888775443333322 111 13456999999998743 2
Q ss_pred HHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCc
Q 041382 306 TLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDI 371 (600)
Q Consensus 306 ~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~ 371 (600)
..+.|+..|+... ....+|++||++..+++++.+ |+. .+.+++|+.++...++...+..
T Consensus 149 ~~~~Ll~~le~~~----~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~ 207 (353)
T 1sxj_D 149 AQSALRRTMETYS----GVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQ 207 (353)
T ss_dssp HHHHHHHHHHHTT----TTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcC----CCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHH
Confidence 3455666666432 235677788999999999999 885 8999999999999988877653
No 57
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.57 E-value=1.6e-14 Score=142.02 Aligned_cols=162 Identities=15% Similarity=0.170 Sum_probs=106.1
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcC---CcEEEEecC
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMN---YDIYNLNLS 253 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~---~~~~~l~~~ 253 (600)
.+.++.+|+++++.+. .+.+.+.+..+... +.+++++|+||||||||++++++|+.+. .+++.+++.
T Consensus 20 ~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~---------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 20 HLPDDETFTSYYPAAG-NDELIGALKSAASG---------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp CCCTTCSTTTSCC--C-CHHHHHHHHHHHHT---------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCCCCChhhccCCCC-CHHHHHHHHHHHhC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 4555579999988331 12333344333321 1356899999999999999999999874 788888887
Q ss_pred ccCChhHHHHHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecC-
Q 041382 254 VVTSDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTN- 332 (600)
Q Consensus 254 ~~~~~~~l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN- 332 (600)
.+... +...+.....+.+|+|||+|.+.. . ......|+..++...... ...+|+|||
T Consensus 90 ~~~~~--~~~~~~~~~~~~vliiDe~~~~~~--~----------------~~~~~~l~~~l~~~~~~~--~~~ii~~~~~ 147 (242)
T 3bos_A 90 IHASI--STALLEGLEQFDLICIDDVDAVAG--H----------------PLWEEAIFDLYNRVAEQK--RGSLIVSASA 147 (242)
T ss_dssp GGGGS--CGGGGTTGGGSSEEEEETGGGGTT--C----------------HHHHHHHHHHHHHHHHHC--SCEEEEEESS
T ss_pred HHHHH--HHHHHHhccCCCEEEEeccccccC--C----------------HHHHHHHHHHHHHHHHcC--CCeEEEEcCC
Confidence 75421 222333345689999999998742 0 011233455544433221 132445544
Q ss_pred CcC---cCCHHHHhcCCcc--eEEEeCCCCHHHHHHHHHHhcCcC
Q 041382 333 YKD---RIDPALLRAGRMD--RHINLSYCTFSTFKQLAANYLDIN 372 (600)
Q Consensus 333 ~~~---~Ld~aLlrpgRfd--~~I~~~~p~~e~r~~il~~~l~~~ 372 (600)
.+. .+++++.+ ||. ..+++++|+.+++.+++..++...
T Consensus 148 ~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~ 190 (242)
T 3bos_A 148 SPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMR 190 (242)
T ss_dssp CTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHT
T ss_pred CHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHc
Confidence 443 45799999 885 899999999999999999887543
No 58
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.57 E-value=2.7e-14 Score=150.68 Aligned_cols=161 Identities=18% Similarity=0.121 Sum_probs=116.2
Q ss_pred CCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc---------CCcEEEEec
Q 041382 182 MTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM---------NYDIYNLNL 252 (600)
Q Consensus 182 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l---------~~~~~~l~~ 252 (600)
..+++++|.++..+.+...+...+. ...+++++|+||||||||++++++++.+ +.+++.+++
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 3458899999998888776643322 1335689999999999999999999988 788899998
Q ss_pred CccCCh----------------------hH-HHHH---HhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHH
Q 041382 253 SVVTSD----------------------SS-LEYL---LLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVT 306 (600)
Q Consensus 253 ~~~~~~----------------------~~-l~~~---~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ 306 (600)
....+. .. +..+ +.....|+||+|||+|.+.. .+ .....
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~--~~-------------~~~~~ 151 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPK--RP-------------GGQDL 151 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHH--ST-------------THHHH
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcc--cC-------------CCChH
Confidence 764321 11 1222 22234588999999999864 10 12345
Q ss_pred HHHHHHhhcCccccCCCeeEEEEecCCc---CcCCHHHHhcCCcce-EEEeCCCCHHHHHHHHHHhcC
Q 041382 307 LAGLLNAIDGLLCCCGDEKITVFTTNYK---DRIDPALLRAGRMDR-HINLSYCTFSTFKQLAANYLD 370 (600)
Q Consensus 307 ls~lL~~ldg~~~~~~~~~iiI~TTN~~---~~Ld~aLlrpgRfd~-~I~~~~p~~e~r~~il~~~l~ 370 (600)
+..+++.++.... +..+.+|+|||.+ +.+++++.+ ||.. .|+|++++.++..++++.++.
T Consensus 152 l~~l~~~~~~~~~--~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~ 215 (387)
T 2v1u_A 152 LYRITRINQELGD--RVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAE 215 (387)
T ss_dssp HHHHHHGGGCC-------CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHH
T ss_pred HHhHhhchhhcCC--CceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHH
Confidence 6666666654310 2357899999987 789999999 9875 899999999999999998764
No 59
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.56 E-value=2.8e-14 Score=147.08 Aligned_cols=154 Identities=14% Similarity=0.171 Sum_probs=116.0
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc-----CCcEEEEe
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM-----NYDIYNLN 251 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l-----~~~~~~l~ 251 (600)
....|.+|++++|.+..++.+...+.. | ..+ .+|||||||||||++++++|+.+ +.+++.++
T Consensus 13 ~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 79 (323)
T 1sxj_B 13 EKYRPQVLSDIVGNKETIDRLQQIAKD-----------G-NMP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN 79 (323)
T ss_dssp HHTCCSSGGGCCSCTHHHHHHHHHHHS-----------C-CCC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC
T ss_pred HhcCCCCHHHHHCCHHHHHHHHHHHHc-----------C-CCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec
Confidence 457889999999999998888776531 2 223 39999999999999999999986 45688888
Q ss_pred cCccCChhHHHHHHhh---------CCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCC
Q 041382 252 LSVVTSDSSLEYLLLH---------VPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCG 322 (600)
Q Consensus 252 ~~~~~~~~~l~~~~~~---------~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~ 322 (600)
+++..+...++..+.. ...+.||+|||+|.+.. ...+.|+..++.. .
T Consensus 80 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~--------------------~~~~~L~~~le~~----~ 135 (323)
T 1sxj_B 80 ASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA--------------------GAQQALRRTMELY----S 135 (323)
T ss_dssp TTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH--------------------HHHHTTHHHHHHT----T
T ss_pred CccccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH--------------------HHHHHHHHHHhcc----C
Confidence 8765555555544332 12378999999998742 1234455555532 2
Q ss_pred CeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcC
Q 041382 323 DEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLD 370 (600)
Q Consensus 323 ~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~ 370 (600)
....+|++||.+..+++++.+ |+. .+.|++|+.++..+++..++.
T Consensus 136 ~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~ 180 (323)
T 1sxj_B 136 NSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIK 180 (323)
T ss_dssp TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred CCceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHH
Confidence 347788889999999999999 875 899999999999999987664
No 60
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.55 E-value=1.2e-13 Score=145.52 Aligned_cols=156 Identities=18% Similarity=0.286 Sum_probs=117.6
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC-----------
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY----------- 245 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~----------- 245 (600)
....|.+|++++|.+..++.+...+.. | ..++.+||+||||||||++++++|+.++.
T Consensus 8 ~k~rp~~~~~~vg~~~~~~~L~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~ 75 (373)
T 1jr3_A 8 RKWRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 75 (373)
T ss_dssp HHTCCCSTTTSCSCHHHHHHHHHHHHH-----------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSS
T ss_pred HhhCCCchhhccCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcc
Confidence 456788999999999998888776631 1 22457999999999999999999998853
Q ss_pred -------------cEEEEecCccCChhHHHHHHhhCC------CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHH
Q 041382 246 -------------DIYNLNLSVVTSDSSLEYLLLHVP------NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVT 306 (600)
Q Consensus 246 -------------~~~~l~~~~~~~~~~l~~~~~~~~------~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ 306 (600)
+++.++...-.....++.++.... .+.||+|||+|.+.. ..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~--------------------~~ 135 (373)
T 1jr3_A 76 CDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR--------------------HS 135 (373)
T ss_dssp SHHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH--------------------HH
T ss_pred cHHHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH--------------------HH
Confidence 345555443223344555555432 468999999998732 24
Q ss_pred HHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCc
Q 041382 307 LAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDI 371 (600)
Q Consensus 307 ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~ 371 (600)
.+.|+..++.. +..+++|++||.+..+++++.+ |+ ..+++++|+.++...++..++..
T Consensus 136 ~~~Ll~~le~~----~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~ 193 (373)
T 1jr3_A 136 FNALLKTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNE 193 (373)
T ss_dssp HHHHHHHHHSC----CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC----CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHH
Confidence 56677777653 2458888999999999999998 87 79999999999999999877643
No 61
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.55 E-value=2.7e-13 Score=141.78 Aligned_cols=165 Identities=18% Similarity=0.242 Sum_probs=119.9
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT 256 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~ 256 (600)
....|.+|+.++|.+.+++.+...+..-. ..|. ++..++|+|||||||||+++++|+.++.++...+...+.
T Consensus 17 ~~lr~~~l~~~~g~~~~~~~l~~~i~~~~-------~~~~-~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~ 88 (334)
T 1in4_A 17 QFLRPKSLDEFIGQENVKKKLSLALEAAK-------MRGE-VLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV 88 (334)
T ss_dssp CTTSCSSGGGCCSCHHHHHHHHHHHHHHH-------HHTC-CCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCC
T ss_pred HHcCCccHHHccCcHHHHHHHHHHHHHHH-------hcCC-CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhc
Confidence 56778899999999877776655543221 1122 235799999999999999999999999988877766665
Q ss_pred ChhHHHHHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCcc------cc--------CC
Q 041382 257 SDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLL------CC--------CG 322 (600)
Q Consensus 257 ~~~~l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~------~~--------~~ 322 (600)
....+...+.....+.|++|||+|.+.+ .....|+..+.... .. .-
T Consensus 89 ~~~~l~~~~~~~~~~~v~~iDE~~~l~~--------------------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l 148 (334)
T 1in4_A 89 KQGDMAAILTSLERGDVLFIDEIHRLNK--------------------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDI 148 (334)
T ss_dssp SHHHHHHHHHHCCTTCEEEEETGGGCCH--------------------HHHHHHHHHHHTSCCCC---------------
T ss_pred CHHHHHHHHHHccCCCEEEEcchhhcCH--------------------HHHHHHHHHHHhcccceeeccCcccccccccC
Confidence 6666776666666788999999998743 01122233332110 00 00
Q ss_pred CeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcCc
Q 041382 323 DEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDI 371 (600)
Q Consensus 323 ~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~~ 371 (600)
..+.++++||++..|++++++ ||...+.+++++.+++.++++.....
T Consensus 149 ~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~ 195 (334)
T 1in4_A 149 QPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASL 195 (334)
T ss_dssp CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHH
Confidence 135677899999999999999 99989999999999999999877643
No 62
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.55 E-value=9.6e-15 Score=137.67 Aligned_cols=146 Identities=16% Similarity=0.223 Sum_probs=100.5
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc----------CCcEE
Q 041382 179 DHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM----------NYDIY 248 (600)
Q Consensus 179 ~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l----------~~~~~ 248 (600)
..|.+|++++|.+...+.+.+.+.. ..++++||+||||||||++++++|+.+ +.+++
T Consensus 16 ~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~ 82 (187)
T 2p65_A 16 ARAGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLV 82 (187)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEE
T ss_pred HhccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEE
Confidence 4577899999999887777665521 234689999999999999999999987 77888
Q ss_pred EEecCccCC--------hhHHHHHHhh---CCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCc
Q 041382 249 NLNLSVVTS--------DSSLEYLLLH---VPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGL 317 (600)
Q Consensus 249 ~l~~~~~~~--------~~~l~~~~~~---~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~ 317 (600)
.+++..+.. ...+..++.. ...+.||+|||+|.+.+ .+.... .... ....|...++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~--~~~~~~------~~~~---~~~~l~~~~~~- 150 (187)
T 2p65_A 83 SLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVG--AGAVAE------GALD---AGNILKPMLAR- 150 (187)
T ss_dssp EECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSS--SSSSCT------TSCC---THHHHHHHHHT-
T ss_pred EEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcc--cccccc------cchH---HHHHHHHHHhc-
Confidence 888765431 1123333332 34678999999999853 111000 0111 22233333332
Q ss_pred cccCCCeeEEEEecCCcC-----cCCHHHHhcCCcceEEEeCCCC
Q 041382 318 LCCCGDEKITVFTTNYKD-----RIDPALLRAGRMDRHINLSYCT 357 (600)
Q Consensus 318 ~~~~~~~~iiI~TTN~~~-----~Ld~aLlrpgRfd~~I~~~~p~ 357 (600)
..+++|+|||.++ .+|+++.+ ||+ .|+++.|+
T Consensus 151 -----~~~~ii~~~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 151 -----GELRCIGATTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp -----TCSCEEEEECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred -----CCeeEEEecCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 3478889999765 68999999 998 59999986
No 63
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.54 E-value=1.1e-13 Score=146.38 Aligned_cols=151 Identities=17% Similarity=0.233 Sum_probs=112.1
Q ss_pred cccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc-----------CCcEEEEecC
Q 041382 185 GTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM-----------NYDIYNLNLS 253 (600)
Q Consensus 185 ~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l-----------~~~~~~l~~~ 253 (600)
++++|.++..+.+...+...... ..+++++|+||||||||++++++++.+ +.+++.++|.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN---------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT---------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 78999999999998888665542 234589999999999999999999988 8899999976
Q ss_pred ccC-Ch-----------------------hH-HHHHHhhCC-CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHH-
Q 041382 254 VVT-SD-----------------------SS-LEYLLLHVP-NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVT- 306 (600)
Q Consensus 254 ~~~-~~-----------------------~~-l~~~~~~~~-~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~- 306 (600)
... +. .. +..++.... .+.||+|||+|.+.. .+ ....
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~--~~--------------~~~~~ 154 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVK--RR--------------GGDIV 154 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHH--ST--------------TSHHH
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhcc--CC--------------CCcee
Confidence 543 21 11 222222222 233999999999864 10 0123
Q ss_pred HHHHHHhhcCccccCCCeeEEEEecCCc---CcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcC
Q 041382 307 LAGLLNAIDGLLCCCGDEKITVFTTNYK---DRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLD 370 (600)
Q Consensus 307 ls~lL~~ldg~~~~~~~~~iiI~TTN~~---~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~ 370 (600)
+..|+... .++.+|+|||.+ +.+++++.+ ||...|+|++++.++..+++..++.
T Consensus 155 l~~l~~~~--------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~ 211 (384)
T 2qby_B 155 LYQLLRSD--------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAE 211 (384)
T ss_dssp HHHHHTSS--------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHH
T ss_pred HHHHhcCC--------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHH
Confidence 44444332 348889999987 789999999 9888999999999999999998764
No 64
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.54 E-value=4.6e-14 Score=147.55 Aligned_cols=157 Identities=20% Similarity=0.207 Sum_probs=102.1
Q ss_pred CCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC------------
Q 041382 178 LDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY------------ 245 (600)
Q Consensus 178 ~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~------------ 245 (600)
..+|.+|++++|.+.+++.+...+ .. +...++|||||||||||++|+++|+.++.
T Consensus 17 ~~~~~~f~~i~G~~~~~~~l~~~~----~~---------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~ 83 (350)
T 1g8p_A 17 TRPVFPFSAIVGQEDMKLALLLTA----VD---------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSP 83 (350)
T ss_dssp -CCCCCGGGSCSCHHHHHHHHHHH----HC---------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCS
T ss_pred CCCCCCchhccChHHHHHHHHHHh----hC---------CCCceEEEECCCCccHHHHHHHHHHhCcccccccccccccc
Confidence 446778999999998776543221 11 12347999999999999999999999863
Q ss_pred ---------------------cEEEEecCcc----CChhHHHHHHhhC-----------CCcceeeecchhhhhhhhccc
Q 041382 246 ---------------------DIYNLNLSVV----TSDSSLEYLLLHV-----------PNRSILVVEDIDCSIKLQNRE 289 (600)
Q Consensus 246 ---------------------~~~~l~~~~~----~~~~~l~~~~~~~-----------~~~sIL~iDeiD~l~~~~~r~ 289 (600)
+++.+..+.. .+...+...+... ..++||||||||.+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~----- 158 (350)
T 1g8p_A 84 NVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLED----- 158 (350)
T ss_dssp SGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH-----
T ss_pred ccccccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCH-----
Confidence 1222221110 0111112222221 1368999999998742
Q ss_pred cCCCCCCCCCCCChHHHHHHHHHhhcCc---cccC------CCeeEEEEecCCcC-cCCHHHHhcCCcceEEEeCCC-CH
Q 041382 290 SQKGDEPADSYRGPQVTLAGLLNAIDGL---LCCC------GDEKITVFTTNYKD-RIDPALLRAGRMDRHINLSYC-TF 358 (600)
Q Consensus 290 ~~~~~~~~~~~~~~~~~ls~lL~~ldg~---~~~~------~~~~iiI~TTN~~~-~Ld~aLlrpgRfd~~I~~~~p-~~ 358 (600)
...+.|+..++.- .... +..+++|+|||..+ .++++|++ ||+.++++++| +.
T Consensus 159 ---------------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~ 221 (350)
T 1g8p_A 159 ---------------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDV 221 (350)
T ss_dssp ---------------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSH
T ss_pred ---------------HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcH
Confidence 2345566655531 1111 12588999999744 89999999 99999999999 67
Q ss_pred HHHHHHHHHhc
Q 041382 359 STFKQLAANYL 369 (600)
Q Consensus 359 e~r~~il~~~l 369 (600)
+.+.+|++..+
T Consensus 222 ~~~~~il~~~~ 232 (350)
T 1g8p_A 222 ETRVEVIRRRD 232 (350)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 78888888754
No 65
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.53 E-value=9.4e-14 Score=143.84 Aligned_cols=151 Identities=9% Similarity=0.097 Sum_probs=107.0
Q ss_pred cccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc----------CCcEEEEecCccC
Q 041382 187 LVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM----------NYDIYNLNLSVVT 256 (600)
Q Consensus 187 l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l----------~~~~~~l~~~~~~ 256 (600)
|.+.++..+.|...+...+.. ..+.+++||||||||||++++++++++ ++.++.++|..+.
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~---------~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMS---------SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---------TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred cCCHHHHHHHHHHHHHHHhcC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 445555666666555544432 345689999999999999999999998 3567889987654
Q ss_pred C----------------------hhHHHHHHhhC----CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHH
Q 041382 257 S----------------------DSSLEYLLLHV----PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGL 310 (600)
Q Consensus 257 ~----------------------~~~l~~~~~~~----~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~l 310 (600)
+ ...+...|... ..++|++|||+|.+.. +..+-.|
T Consensus 93 t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~-------------------q~~L~~l 153 (318)
T 3te6_A 93 GMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLS-------------------EKILQYF 153 (318)
T ss_dssp --HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCC-------------------THHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhc-------------------chHHHHH
Confidence 2 23456666653 4578999999998841 1345555
Q ss_pred HHhhcCccccCCCeeEEEEecCCcCc----CCHHHHhcCCcc-eEEEeCCCCHHHHHHHHHHhcCc
Q 041382 311 LNAIDGLLCCCGDEKITVFTTNYKDR----IDPALLRAGRMD-RHINLSYCTFSTFKQLAANYLDI 371 (600)
Q Consensus 311 L~~ldg~~~~~~~~~iiI~TTN~~~~----Ld~aLlrpgRfd-~~I~~~~p~~e~r~~il~~~l~~ 371 (600)
++... .....+++|+++|..+. |++++.+ ||+ ..|.|++++.++..+|++..+..
T Consensus 154 ~~~~~----~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 154 EKWIS----SKNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp HHHHH----CSSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred Hhccc----ccCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 55432 12235889999998765 3455567 886 68999999999999999987754
No 66
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.53 E-value=5.5e-14 Score=162.69 Aligned_cols=159 Identities=16% Similarity=0.221 Sum_probs=113.9
Q ss_pred cccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCCh---
Q 041382 185 GTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTSD--- 258 (600)
Q Consensus 185 ~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~~--- 258 (600)
+.++|.+..++.+...+......-. ....+..++||+||||||||++|+++|+.+ +.+++.++|+.+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~----~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~ 566 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLK----DPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHST 566 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCS----CTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcccC----CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccccccc
Confidence 4578999999888887765432100 001112269999999999999999999998 789999999988642
Q ss_pred --hHHHHHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCcccc-------CCCeeEEEE
Q 041382 259 --SSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCC-------CGDEKITVF 329 (600)
Q Consensus 259 --~~l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~-------~~~~~iiI~ 329 (600)
..+...+.. ..++||||||||.+.+ ...+.|+..|+.-.-. ...+++||+
T Consensus 567 ~~~~l~~~~~~-~~~~vl~lDEi~~~~~--------------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ 625 (758)
T 3pxi_A 567 SGGQLTEKVRR-KPYSVVLLDAIEKAHP--------------------DVFNILLQVLEDGRLTDSKGRTVDFRNTILIM 625 (758)
T ss_dssp C---CHHHHHH-CSSSEEEEECGGGSCH--------------------HHHHHHHHHHHHSBCC-----CCBCTTCEEEE
T ss_pred ccchhhHHHHh-CCCeEEEEeCccccCH--------------------HHHHHHHHHhccCeEEcCCCCEeccCCeEEEE
Confidence 223333332 3578999999997732 3567788887642110 113479999
Q ss_pred ecCCcCc------------CCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcC
Q 041382 330 TTNYKDR------------IDPALLRAGRMDRHINLSYCTFSTFKQLAANYLD 370 (600)
Q Consensus 330 TTN~~~~------------Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~ 370 (600)
|||.+.. ++|+|++ ||+..|.|++|+.+++..|+..++.
T Consensus 626 ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~ 676 (758)
T 3pxi_A 626 TSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSD 676 (758)
T ss_dssp EESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHH
T ss_pred eCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHH
Confidence 9996544 7899998 9999999999999999999998775
No 67
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.51 E-value=1.4e-13 Score=149.36 Aligned_cols=188 Identities=18% Similarity=0.262 Sum_probs=116.5
Q ss_pred cCCCCCCccccc-cChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc-----CCcEEEE
Q 041382 177 NLDHPMTFGTLV-MDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM-----NYDIYNL 250 (600)
Q Consensus 177 ~~~~p~~f~~l~-g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l-----~~~~~~l 250 (600)
.+.+..+|++++ |..... ....+..+...+ |. +.+++||||||||||++++++|+++ +.+++.+
T Consensus 97 ~l~~~~tfd~fv~g~~n~~--a~~~~~~~a~~~------~~--~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v 166 (440)
T 2z4s_A 97 PLNPDYTFENFVVGPGNSF--AYHAALEVAKHP------GR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYI 166 (440)
T ss_dssp CCCTTCSGGGCCCCTTTHH--HHHHHHHHHHST------TS--SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEE
T ss_pred CCCCCCChhhcCCCCchHH--HHHHHHHHHhCC------CC--CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe
Confidence 455556899987 544332 222333333321 21 4689999999999999999999988 8889999
Q ss_pred ecCccCChhHHH---------HHHhhCC-CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCcccc
Q 041382 251 NLSVVTSDSSLE---------YLLLHVP-NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCC 320 (600)
Q Consensus 251 ~~~~~~~~~~l~---------~~~~~~~-~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~ 320 (600)
++..+.. .+. .+..... .+.||||||+|.+.+ . ......|+..++.....
T Consensus 167 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~--~----------------~~~q~~l~~~l~~l~~~ 226 (440)
T 2z4s_A 167 TSEKFLN--DLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIG--K----------------TGVQTELFHTFNELHDS 226 (440)
T ss_dssp EHHHHHH--HHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSS--C----------------HHHHHHHHHHHHHHHTT
T ss_pred eHHHHHH--HHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccC--C----------------hHHHHHHHHHHHHHHHC
Confidence 9876531 111 1222224 789999999998853 0 01233455555443322
Q ss_pred CCCeeEEEEecCCcCc---CCHHHHhcCCcc--eEEEeCCCCHHHHHHHHHHhcCcCCCccH-HHHHHHhhhcCCCHHHH
Q 041382 321 CGDEKITVFTTNYKDR---IDPALLRAGRMD--RHINLSYCTFSTFKQLAANYLDINDHDLY-CHIEKLMEKVKVSPAEV 394 (600)
Q Consensus 321 ~~~~~iiI~TTN~~~~---Ld~aLlrpgRfd--~~I~~~~p~~e~r~~il~~~l~~~~~~~~-~~i~~l~~~~~~t~a~i 394 (600)
+..+||+|.+.+.. ++++|++ ||. ..+.+++|+.++|..+++..+........ +.+..+.....-+++++
T Consensus 227 --~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~l 302 (440)
T 2z4s_A 227 --GKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRL 302 (440)
T ss_dssp --TCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHHH
T ss_pred --CCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHH
Confidence 22455555555554 8999999 886 78999999999999999987753222111 22333333334445554
Q ss_pred HHHH
Q 041382 395 AGEL 398 (600)
Q Consensus 395 ~~~l 398 (600)
.+.|
T Consensus 303 ~~~L 306 (440)
T 2z4s_A 303 RGAI 306 (440)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 68
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.51 E-value=2.2e-13 Score=142.71 Aligned_cols=156 Identities=15% Similarity=0.167 Sum_probs=108.0
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc-CC----------
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM-NY---------- 245 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l-~~---------- 245 (600)
...+|.+|++++|.+.+++.+...+. . .| ..+. ++|+||||||||++++++|+.+ +.
T Consensus 6 ~kyrP~~~~~~vg~~~~~~~l~~~~~---~-------~~-~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~ 73 (354)
T 1sxj_E 6 DKYRPKSLNALSHNEELTNFLKSLSD---Q-------PR-DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVR 73 (354)
T ss_dssp TTTCCCSGGGCCSCHHHHHHHHTTTT---C-------TT-CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------
T ss_pred hccCCCCHHHhcCCHHHHHHHHHHHh---h-------CC-CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecce
Confidence 67899999999999988777655431 1 12 2233 9999999999999999999964 21
Q ss_pred ------------------cEEEEecCccCChh--HHHHHHhh----------------CCCcceeeecchhhhhhhhccc
Q 041382 246 ------------------DIYNLNLSVVTSDS--SLEYLLLH----------------VPNRSILVVEDIDCSIKLQNRE 289 (600)
Q Consensus 246 ------------------~~~~l~~~~~~~~~--~l~~~~~~----------------~~~~sIL~iDeiD~l~~~~~r~ 289 (600)
+++.++.+...... .++..+.. ...|.|++|||+|.+-.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~----- 148 (354)
T 1sxj_E 74 QFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK----- 148 (354)
T ss_dssp ------------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCH-----
T ss_pred eecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCH-----
Confidence 23334433222111 24433322 22567999999998521
Q ss_pred cCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhc
Q 041382 290 SQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYL 369 (600)
Q Consensus 290 ~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l 369 (600)
...+.|+..|+... .+..+|++||.++.+.+++.+ |+ ..+.|++|+.++...+++..+
T Consensus 149 ---------------~~~~~L~~~le~~~----~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~ 206 (354)
T 1sxj_E 149 ---------------DAQAALRRTMEKYS----KNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVV 206 (354)
T ss_dssp ---------------HHHHHHHHHHHHST----TTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHhhc----CCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHH
Confidence 23455666666432 247888999999999999999 88 799999999999999988766
Q ss_pred Cc
Q 041382 370 DI 371 (600)
Q Consensus 370 ~~ 371 (600)
..
T Consensus 207 ~~ 208 (354)
T 1sxj_E 207 TN 208 (354)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 69
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.50 E-value=2e-13 Score=158.00 Aligned_cols=154 Identities=16% Similarity=0.258 Sum_probs=115.2
Q ss_pred ccccChhHHHHHHHHHHHHHhCHHHHHHhCCC----CCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCCh---
Q 041382 186 TLVMDGDLKETVLNDLDCFRRGKEYYRKIGKV----WKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSD--- 258 (600)
Q Consensus 186 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~----~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~~--- 258 (600)
.++|.++.++.+...+... ..|.. +..++||+||||||||++|+++|+.++.+++.++|+.+...
T Consensus 459 ~v~g~~~~~~~l~~~i~~~--------~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMA--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHH--------HTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hccCHHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 4778888888877766432 22332 23369999999999999999999999999999999877431
Q ss_pred ----------------hHHHHHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCcc-cc-
Q 041382 259 ----------------SSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLL-CC- 320 (600)
Q Consensus 259 ----------------~~l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~-~~- 320 (600)
..+...+.. ..++||||||||.+.+ ..++.|+..||.-. ..
T Consensus 531 ~~l~g~~~g~~g~~~~~~l~~~~~~-~~~~vl~lDEi~~~~~--------------------~~~~~Ll~~le~~~~~~~ 589 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQGGLLTDAVIK-HPHAVLLLDEIEKAHP--------------------DVFNILLQVMDNGTLTDN 589 (758)
T ss_dssp SSSCCCCSCSHHHHHTTHHHHHHHH-CSSEEEEEETGGGSCH--------------------HHHHHHHHHHHHSEEEET
T ss_pred hhhcCCCCCCcCccccchHHHHHHh-CCCcEEEEeCccccCH--------------------HHHHHHHHHhcCcEEEcC
Confidence 123333333 3579999999997632 36677888887321 11
Q ss_pred CC-----CeeEEEEecCCcC-------------------------cCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcC
Q 041382 321 CG-----DEKITVFTTNYKD-------------------------RIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLD 370 (600)
Q Consensus 321 ~~-----~~~iiI~TTN~~~-------------------------~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~ 370 (600)
.+ .+++||+|||... .++|+|++ |||..|.|++|+.+++..|+..++.
T Consensus 590 ~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~ 667 (758)
T 1r6b_X 590 NGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_dssp TTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred CCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHH
Confidence 11 3478999999743 68999999 9999999999999999999998875
No 70
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.50 E-value=7.5e-13 Score=139.91 Aligned_cols=159 Identities=15% Similarity=0.040 Sum_probs=116.0
Q ss_pred CccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc----CCcEEEEecCccCCh
Q 041382 183 TFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM----NYDIYNLNLSVVTSD 258 (600)
Q Consensus 183 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l----~~~~~~l~~~~~~~~ 258 (600)
.+++++|.++..+.+...+.....+. .+..+.++|+||||||||++++++++.+ +.+++.++|....+.
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~-------~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~ 87 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNP-------GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF 87 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHST-------TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCC-------CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCH
Confidence 34789999999999988886654421 1112379999999999999999999998 677889997665432
Q ss_pred hH--------------------------HHHHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHH
Q 041382 259 SS--------------------------LEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLN 312 (600)
Q Consensus 259 ~~--------------------------l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~ 312 (600)
.. +...+.....|.||+|||+|.+. ...+..|+.
T Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~--------------------~~~~~~L~~ 147 (389)
T 1fnn_A 88 TAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA--------------------PDILSTFIR 147 (389)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC--------------------HHHHHHHHH
T ss_pred HHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc--------------------hHHHHHHHH
Confidence 11 11222233458899999999872 135666777
Q ss_pred hhcCccccCCCeeEEEEecCCc---CcCCHHHHhcCCcce-EEEeCCCCHHHHHHHHHHhcC
Q 041382 313 AIDGLLCCCGDEKITVFTTNYK---DRIDPALLRAGRMDR-HINLSYCTFSTFKQLAANYLD 370 (600)
Q Consensus 313 ~ldg~~~~~~~~~iiI~TTN~~---~~Ld~aLlrpgRfd~-~I~~~~p~~e~r~~il~~~l~ 370 (600)
.++........++.+|++||.+ +.+++.+.+ ||.. .|+|++++.++..+++...+.
T Consensus 148 ~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~ 207 (389)
T 1fnn_A 148 LGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAK 207 (389)
T ss_dssp HTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHH
T ss_pred HHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 7765432111247888999887 778999998 8875 899999999999999987764
No 71
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.50 E-value=2.8e-13 Score=142.62 Aligned_cols=162 Identities=15% Similarity=0.161 Sum_probs=115.6
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc------CCcEEEEec
Q 041382 179 DHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM------NYDIYNLNL 252 (600)
Q Consensus 179 ~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l------~~~~~~l~~ 252 (600)
.+...+++++|.++..+.+.+.+...... ..++.++|+||||||||++++++++.+ +.+++.+++
T Consensus 14 ~~~~~p~~~~gr~~e~~~l~~~l~~~~~~---------~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~ 84 (386)
T 2qby_A 14 LPDYIPDELPHREDQIRKIASILAPLYRE---------EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT 84 (386)
T ss_dssp SSSCCCSCCTTCHHHHHHHHHSSGGGGGT---------CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH
T ss_pred CCccCCCCCCChHHHHHHHHHHHHHHHcC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence 33345588999999988887766433221 234689999999999999999999988 888999986
Q ss_pred CccCC----------------------hhH----HHHHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHH
Q 041382 253 SVVTS----------------------DSS----LEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVT 306 (600)
Q Consensus 253 ~~~~~----------------------~~~----l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ 306 (600)
....+ ... +...+.....|+||+|||+|.+.. .+ ....
T Consensus 85 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~--~~--------------~~~~ 148 (386)
T 2qby_A 85 RQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVK--KY--------------NDDI 148 (386)
T ss_dssp HHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHH--SS--------------CSTH
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhc--cC--------------cCHH
Confidence 53221 112 222233334589999999999864 10 0125
Q ss_pred HHHHHHhhcCccccCCCeeEEEEecCCc---CcCCHHHHhcCCcc-eEEEeCCCCHHHHHHHHHHhcC
Q 041382 307 LAGLLNAIDGLLCCCGDEKITVFTTNYK---DRIDPALLRAGRMD-RHINLSYCTFSTFKQLAANYLD 370 (600)
Q Consensus 307 ls~lL~~ldg~~~~~~~~~iiI~TTN~~---~~Ld~aLlrpgRfd-~~I~~~~p~~e~r~~il~~~l~ 370 (600)
+..++..++.. .+.++.+|++||.+ +.+++.+.+ ||. ..|++++++.++..+++..++.
T Consensus 149 l~~l~~~~~~~---~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~ 211 (386)
T 2qby_A 149 LYKLSRINSEV---NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQ 211 (386)
T ss_dssp HHHHHHHHHSC---CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHH
T ss_pred HHHHhhchhhc---CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHH
Confidence 66777777654 12358888899876 578899998 775 5899999999999999987663
No 72
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.48 E-value=2.1e-13 Score=137.47 Aligned_cols=155 Identities=16% Similarity=0.130 Sum_probs=100.2
Q ss_pred CCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcC---CcEEEEecCccCCh
Q 041382 182 MTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMN---YDIYNLNLSVVTSD 258 (600)
Q Consensus 182 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~---~~~~~l~~~~~~~~ 258 (600)
.+|++++|.......+.+.+..... .+.++||+||||||||++|+++++.+. .+++.++|+.+...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~-----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~ 71 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAP-----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTT-----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH
T ss_pred cccccceeCCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh
Confidence 4799999999998888887765433 235899999999999999999999885 68999999987432
Q ss_pred hHHHHHHhh-----------------CCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCcc-c-
Q 041382 259 SSLEYLLLH-----------------VPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLL-C- 319 (600)
Q Consensus 259 ~~l~~~~~~-----------------~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~-~- 319 (600)
.--..+|.. ...+++|||||||.+.. .....|+..++... .
T Consensus 72 ~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~--------------------~~q~~Ll~~l~~~~~~~ 131 (265)
T 2bjv_A 72 LLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPM--------------------MVQEKLLRVIEYGELER 131 (265)
T ss_dssp HHHHHHHCCC---------CCCCHHHHTTTSEEEEESGGGSCH--------------------HHHHHHHHHHHHCEECC
T ss_pred HHHHHhcCCcccccccccccccchhhhcCCcEEEEechHhcCH--------------------HHHHHHHHHHHhCCeec
Confidence 111122211 12467999999998742 23345566555211 0
Q ss_pred -----cCCCeeEEEEecCCc-------CcCCHHHHhcCCcc-eEEEeCCCCH--HHHHHHHHHhc
Q 041382 320 -----CCGDEKITVFTTNYK-------DRIDPALLRAGRMD-RHINLSYCTF--STFKQLAANYL 369 (600)
Q Consensus 320 -----~~~~~~iiI~TTN~~-------~~Ld~aLlrpgRfd-~~I~~~~p~~--e~r~~il~~~l 369 (600)
....++.+|+|||.. ..++++|.+ ||. ..|.+|+... +....+++.++
T Consensus 132 ~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l 194 (265)
T 2bjv_A 132 VGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFA 194 (265)
T ss_dssp CCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHH
T ss_pred CCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHH
Confidence 001246788999873 357899999 995 4677776654 55566666555
No 73
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.47 E-value=2.7e-13 Score=141.89 Aligned_cols=157 Identities=23% Similarity=0.327 Sum_probs=113.9
Q ss_pred ccccccccCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcC-----
Q 041382 170 RWSSSGVNLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMN----- 244 (600)
Q Consensus 170 ~w~~~~v~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~----- 244 (600)
.|. ....|.+|++++|.+.+++.+...+. .|. .+ ++|||||||||||++++++|+.+.
T Consensus 14 ~~~----~k~rp~~~~~~~g~~~~~~~L~~~i~-----------~g~-~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~ 76 (340)
T 1sxj_C 14 PWV----EKYRPETLDEVYGQNEVITTVRKFVD-----------EGK-LP-HLLFYGPPGTGKTSTIVALAREIYGKNYS 76 (340)
T ss_dssp CHH----HHTCCSSGGGCCSCHHHHHHHHHHHH-----------TTC-CC-CEEEECSSSSSHHHHHHHHHHHHHTTSHH
T ss_pred chH----HHhCCCcHHHhcCcHHHHHHHHHHHh-----------cCC-Cc-eEEEECCCCCCHHHHHHHHHHHHcCCCcc
Confidence 566 56789999999999888877765553 122 22 399999999999999999999873
Q ss_pred CcEEEEecCccCChhHHHHHH---hh-C----CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcC
Q 041382 245 YDIYNLNLSVVTSDSSLEYLL---LH-V----PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDG 316 (600)
Q Consensus 245 ~~~~~l~~~~~~~~~~l~~~~---~~-~----~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg 316 (600)
..+..++.++..+...++..+ .. . ..+.|++|||+|.+.. ...+.|+..++.
T Consensus 77 ~~~~~~~~~~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~--------------------~~~~~L~~~le~ 136 (340)
T 1sxj_C 77 NMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN--------------------AAQNALRRVIER 136 (340)
T ss_dssp HHEEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH--------------------HHHHHHHHHHHH
T ss_pred ceEEEEcCcccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH--------------------HHHHHHHHHHhc
Confidence 246777776644444444332 21 1 2368999999998732 134556666664
Q ss_pred ccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHHHhcC
Q 041382 317 LLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLD 370 (600)
Q Consensus 317 ~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~ 370 (600)
.. ....+|++||.+..+.|++.+ |+. .+.|+.++.++...++...+.
T Consensus 137 ~~----~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~ 183 (340)
T 1sxj_C 137 YT----KNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLV 183 (340)
T ss_dssp TT----TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred CC----CCeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHH
Confidence 32 346778889999999999999 885 899999999888888776664
No 74
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.42 E-value=3.7e-13 Score=123.50 Aligned_cols=132 Identities=12% Similarity=0.071 Sum_probs=91.3
Q ss_pred ccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCChhHHH
Q 041382 186 TLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTSDSSLE 262 (600)
Q Consensus 186 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~~~~l~ 262 (600)
.++|.....+++.+.+..... .+..+||+||||||||++|+++++.. +.+++ ++|+.+.+.....
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~-----------~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~~~~~ 69 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE-----------TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNAPQLN 69 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT-----------CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTSSCHH
T ss_pred CceeCCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcchhhh
Confidence 467888888888877765432 23579999999999999999999987 77899 9999887665566
Q ss_pred HHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCc-------C
Q 041382 263 YLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYK-------D 335 (600)
Q Consensus 263 ~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~-------~ 335 (600)
..+..+ .+++|||||||.+.. .....|+..|.... ..+.+|+|||.+ .
T Consensus 70 ~~~~~a-~~g~l~ldei~~l~~--------------------~~q~~Ll~~l~~~~----~~~~~I~~t~~~~~~~~~~~ 124 (145)
T 3n70_A 70 DFIALA-QGGTLVLSHPEHLTR--------------------EQQYHLVQLQSQEH----RPFRLIGIGDTSLVELAASN 124 (145)
T ss_dssp HHHHHH-TTSCEEEECGGGSCH--------------------HHHHHHHHHHHSSS----CSSCEEEEESSCHHHHHHHS
T ss_pred cHHHHc-CCcEEEEcChHHCCH--------------------HHHHHHHHHHhhcC----CCEEEEEECCcCHHHHHHcC
Confidence 666554 468999999998842 23345666664332 235678888863 2
Q ss_pred cCCHHHHhcCCcc-eEEEeCCC
Q 041382 336 RIDPALLRAGRMD-RHINLSYC 356 (600)
Q Consensus 336 ~Ld~aLlrpgRfd-~~I~~~~p 356 (600)
.+++.|.. |+. ..|++|+.
T Consensus 125 ~~~~~L~~--rl~~~~i~lPpL 144 (145)
T 3n70_A 125 HIIAELYY--CFAMTQIACLPL 144 (145)
T ss_dssp CCCHHHHH--HHHHHEEECCCC
T ss_pred CCCHHHHH--HhcCCEEeCCCC
Confidence 34555554 442 35666653
No 75
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.38 E-value=1.2e-11 Score=129.20 Aligned_cols=148 Identities=16% Similarity=0.147 Sum_probs=105.8
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHcC------------------------CcEEEEecC---ccCChhHHHHHHhhCC-
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYMN------------------------YDIYNLNLS---VVTSDSSLEYLLLHVP- 269 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l~------------------------~~~~~l~~~---~~~~~~~l~~~~~~~~- 269 (600)
.++++|||||||||||++|+++|+.+. .+++.++.. .-.+...++.++....
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~~ 102 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNE 102 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTTS
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHhh
Confidence 456899999999999999999999874 246666653 2234455666665542
Q ss_pred -----CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhc
Q 041382 270 -----NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRA 344 (600)
Q Consensus 270 -----~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrp 344 (600)
.+.|++|||+|.+.. ...+.||..++.. +...++|++||.++.++|++++
T Consensus 103 ~~~~~~~kvviIdead~l~~--------------------~a~naLLk~lEep----~~~~~~Il~t~~~~~l~~ti~S- 157 (334)
T 1a5t_A 103 HARLGGAKVVWVTDAALLTD--------------------AAANALLKTLEEP----PAETWFFLATREPERLLATLRS- 157 (334)
T ss_dssp CCTTSSCEEEEESCGGGBCH--------------------HHHHHHHHHHTSC----CTTEEEEEEESCGGGSCHHHHT-
T ss_pred ccccCCcEEEEECchhhcCH--------------------HHHHHHHHHhcCC----CCCeEEEEEeCChHhCcHHHhh-
Confidence 467999999998732 2456788888753 3458888999999999999999
Q ss_pred CCcceEEEeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhhhcCCCHHHHHH
Q 041382 345 GRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLMEKVKVSPAEVAG 396 (600)
Q Consensus 345 gRfd~~I~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~~~~~t~a~i~~ 396 (600)
|+ ..+.|++|+.++..+++...... ....+..++...+-+++.+..
T Consensus 158 -Rc-~~~~~~~~~~~~~~~~L~~~~~~----~~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 158 -RC-RLHYLAPPPEQYAVTWLSREVTM----SQDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp -TS-EEEECCCCCHHHHHHHHHHHCCC----CHHHHHHHHHHTTTCHHHHHH
T ss_pred -cc-eeeeCCCCCHHHHHHHHHHhcCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 88 58999999999999988876521 122333444433444544443
No 76
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.36 E-value=4e-12 Score=148.96 Aligned_cols=156 Identities=17% Similarity=0.262 Sum_probs=115.0
Q ss_pred ccccccChhHHHHHHHHHHHHHhCHHHHHHhCCC----CCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccC
Q 041382 184 FGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKV----WKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVT 256 (600)
Q Consensus 184 f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~----~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~ 256 (600)
++.++|.+..++.+...+..... |.. +..++||+||||||||++|+++|+.+ +.+++.++|+.+.
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~--------g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~ 628 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARA--------GLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM 628 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGG--------GCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCC
T ss_pred hcccCCcHHHHHHHHHHHHHHhc--------ccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhcc
Confidence 35678888888888877754322 211 22479999999999999999999998 7899999998775
Q ss_pred Chh-------------------HHHHHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCc
Q 041382 257 SDS-------------------SLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGL 317 (600)
Q Consensus 257 ~~~-------------------~l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~ 317 (600)
... .+...+.. ..++||||||||.+-. ..++.|+..|+.-
T Consensus 629 ~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~-~~~~vl~lDEi~~l~~--------------------~~~~~Ll~~l~~~ 687 (854)
T 1qvr_A 629 EKHAVSRLIGAPPGYVGYEEGGQLTEAVRR-RPYSVILFDEIEKAHP--------------------DVFNILLQILDDG 687 (854)
T ss_dssp SSGGGGGC--------------CHHHHHHH-CSSEEEEESSGGGSCH--------------------HHHHHHHHHHTTT
T ss_pred chhHHHHHcCCCCCCcCccccchHHHHHHh-CCCeEEEEecccccCH--------------------HHHHHHHHHhccC
Confidence 321 12222222 3468999999997632 4677788888743
Q ss_pred ccc--C-----CCeeEEEEecCC--------------------------cCcCCHHHHhcCCcceEEEeCCCCHHHHHHH
Q 041382 318 LCC--C-----GDEKITVFTTNY--------------------------KDRIDPALLRAGRMDRHINLSYCTFSTFKQL 364 (600)
Q Consensus 318 ~~~--~-----~~~~iiI~TTN~--------------------------~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~i 364 (600)
.-. . -.+.+||+|||. ...+.|+|+. ||+..+.+++|+.++...|
T Consensus 688 ~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i 765 (854)
T 1qvr_A 688 RLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQI 765 (854)
T ss_dssp EECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHH
T ss_pred ceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHH
Confidence 211 0 025789999996 3457889998 9999999999999999999
Q ss_pred HHHhcC
Q 041382 365 AANYLD 370 (600)
Q Consensus 365 l~~~l~ 370 (600)
+..++.
T Consensus 766 ~~~~l~ 771 (854)
T 1qvr_A 766 VEIQLS 771 (854)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998775
No 77
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.31 E-value=9e-12 Score=128.58 Aligned_cols=152 Identities=18% Similarity=0.199 Sum_probs=101.3
Q ss_pred ccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCChhHHH
Q 041382 186 TLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTSDSSLE 262 (600)
Q Consensus 186 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~~~~l~ 262 (600)
+++|.....+.+.+.+..... .+.++||+||||||||++|+++++.. +.+++.++|+.+....--.
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~-----------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAP-----------SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCS-----------TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 578888888888877765432 24589999999999999999999976 6789999998875322122
Q ss_pred HHHhhC-----------------CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCcc-c-----
Q 041382 263 YLLLHV-----------------PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLL-C----- 319 (600)
Q Consensus 263 ~~~~~~-----------------~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~-~----- 319 (600)
.+|... ..+++|||||||.+.. .....|+..++... .
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~--------------------~~q~~Ll~~l~~~~~~~~g~~ 131 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP--------------------LMQVRLLRAIQEREVQRVGSN 131 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCH--------------------HHHHHHHHHHHSSBCCBTTBC
T ss_pred HhcCccccccCchhhhhcCHHHhcCCCEEEEeccccCCH--------------------HHHHHHHHHHhcCEeeecCCc
Confidence 222210 1357999999998732 23455666665431 0
Q ss_pred -cCCCeeEEEEecCCc-------CcCCHHHHhcCCcc-eEEEeCCCC--HHHHHHHHHHhcC
Q 041382 320 -CCGDEKITVFTTNYK-------DRIDPALLRAGRMD-RHINLSYCT--FSTFKQLAANYLD 370 (600)
Q Consensus 320 -~~~~~~iiI~TTN~~-------~~Ld~aLlrpgRfd-~~I~~~~p~--~e~r~~il~~~l~ 370 (600)
....++.||+|||.. ..+++.|.. ||. ..|++|+.. .++...++..|+.
T Consensus 132 ~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~ 191 (304)
T 1ojl_A 132 QTISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLR 191 (304)
T ss_dssp CCCBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHH
T ss_pred ccccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHH
Confidence 011247788999874 346777777 774 446677665 4555567766653
No 78
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.30 E-value=1.5e-12 Score=119.06 Aligned_cols=132 Identities=11% Similarity=0.048 Sum_probs=89.2
Q ss_pred ccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCChhHHHHHH
Q 041382 186 TLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYLL 265 (600)
Q Consensus 186 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~~~~l~~~~ 265 (600)
+++|.....+++.+.+..+.. .+.++||+||||||||++|+++++..+ +++.++|+.+... .....+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~-----------~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~-~~~~~~ 71 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK-----------RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLID-MPMELL 71 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT-----------CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHH-CHHHHH
T ss_pred CceeCCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChH-hhhhHH
Confidence 467888888888888865543 235799999999999999999999988 9999999876432 234455
Q ss_pred hhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCc-Cc----CCHH
Q 041382 266 LHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYK-DR----IDPA 340 (600)
Q Consensus 266 ~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~-~~----Ld~a 340 (600)
..+ .+++|||||||.+.. .....|+..++... ..++.+|+|||.+ +. +++.
T Consensus 72 ~~a-~~~~l~lDei~~l~~--------------------~~q~~Ll~~l~~~~---~~~~~iI~~tn~~~~~~~~~~~~~ 127 (143)
T 3co5_A 72 QKA-EGGVLYVGDIAQYSR--------------------NIQTGITFIIGKAE---RCRVRVIASCSYAAGSDGISCEEK 127 (143)
T ss_dssp HHT-TTSEEEEEECTTCCH--------------------HHHHHHHHHHHHHT---TTTCEEEEEEEECTTTC--CHHHH
T ss_pred HhC-CCCeEEEeChHHCCH--------------------HHHHHHHHHHHhCC---CCCEEEEEecCCCHHHHHhCccHH
Confidence 444 468999999998742 12334555555321 1346788888843 33 4455
Q ss_pred HHhcCCc-ceEEEeCCC
Q 041382 341 LLRAGRM-DRHINLSYC 356 (600)
Q Consensus 341 LlrpgRf-d~~I~~~~p 356 (600)
|.. |+ ...|++|+.
T Consensus 128 L~~--rl~~~~i~lPpL 142 (143)
T 3co5_A 128 LAG--LFSESVVRIPPL 142 (143)
T ss_dssp HHH--HSSSEEEEECCC
T ss_pred HHH--HhcCcEEeCCCC
Confidence 665 54 446777764
No 79
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.29 E-value=1e-11 Score=136.31 Aligned_cols=146 Identities=18% Similarity=0.136 Sum_probs=95.7
Q ss_pred ccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC--cEEEEecCccCChhHH--
Q 041382 186 TLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY--DIYNLNLSVVTSDSSL-- 261 (600)
Q Consensus 186 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~--~~~~l~~~~~~~~~~l-- 261 (600)
.++|.+++++.+...+. .++++||+||||||||++|+++|+.++. ++..+.+.. .+...+
T Consensus 23 ~ivGq~~~i~~l~~al~---------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~-~t~~dL~G 86 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRF-STPEEVFG 86 (500)
T ss_dssp TCSSCHHHHHHHHHHHH---------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTT-CCHHHHHC
T ss_pred hhHHHHHHHHHHHHHHh---------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhc-CCHHHhcC
Confidence 46788888776655442 1248999999999999999999999854 455555532 111111
Q ss_pred ---------HHHHhhCC-----CcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcC-------cccc
Q 041382 262 ---------EYLLLHVP-----NRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDG-------LLCC 320 (600)
Q Consensus 262 ---------~~~~~~~~-----~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg-------~~~~ 320 (600)
...+.... .++|||||||+.+. ..+.+.|+..|+. ....
T Consensus 87 ~~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~--------------------~~~q~~LL~~lee~~v~i~G~~~~ 146 (500)
T 3nbx_X 87 PLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAG--------------------PAILNTLLTAINERQFRNGAHVEK 146 (500)
T ss_dssp CBC----------CBCCTTSGGGCSEEEEESGGGCC--------------------HHHHHHHHHHHHSSEEECSSSEEE
T ss_pred cccHHHHhhchhHHhhhccCCCcceeeeHHhHhhhc--------------------HHHHHHHHHHHHHHhccCCCCcCC
Confidence 12222221 46799999998652 2356778888752 2111
Q ss_pred CCCeeEEEEecCCcCc---CCHHHHhcCCcceEEEeCCCCH-HHHHHHHHHhcC
Q 041382 321 CGDEKITVFTTNYKDR---IDPALLRAGRMDRHINLSYCTF-STFKQLAANYLD 370 (600)
Q Consensus 321 ~~~~~iiI~TTN~~~~---Ld~aLlrpgRfd~~I~~~~p~~-e~r~~il~~~l~ 370 (600)
. ...++|+|||.... +.+++++ ||...|.+|+|+. +++..|++....
T Consensus 147 ~-~~~~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~ 197 (500)
T 3nbx_X 147 I-PMRLLVAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQD 197 (500)
T ss_dssp C-CCCEEEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCC
T ss_pred c-chhhhhhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccc
Confidence 1 22466888885322 4469999 9999999999987 778889886553
No 80
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.27 E-value=2.8e-11 Score=124.97 Aligned_cols=121 Identities=12% Similarity=0.176 Sum_probs=95.0
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHc------CCcEEEEecCc-cCChhHHHHHHhhCC------Ccceeeecchhhhhhhh
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYM------NYDIYNLNLSV-VTSDSSLEYLLLHVP------NRSILVVEDIDCSIKLQ 286 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l------~~~~~~l~~~~-~~~~~~l~~~~~~~~------~~sIL~iDeiD~l~~~~ 286 (600)
..||||||||||||++++++|+.+ ..+++.++.+. -.+...++.++..+. ...|++|||+|.+-.
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~-- 96 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ-- 96 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH--
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCH--
Confidence 489999999999999999999864 45788888764 344555666665542 246999999998832
Q ss_pred ccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHH
Q 041382 287 NRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAA 366 (600)
Q Consensus 287 ~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~ 366 (600)
...+.||..|+.. +...++|++||++..+.|++++ | .++|++|+.++..+++.
T Consensus 97 ------------------~a~naLLk~LEep----~~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~L~ 149 (305)
T 2gno_A 97 ------------------QAANAFLKALEEP----PEYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEFRDLVK 149 (305)
T ss_dssp ------------------HHHHHTHHHHHSC----CTTEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHHHHHHHH
T ss_pred ------------------HHHHHHHHHHhCC----CCCeEEEEEECChHhChHHHHc--e---eEeCCCCCHHHHHHHHH
Confidence 2456788888754 2457888888999999999999 8 89999999999888888
Q ss_pred Hhc
Q 041382 367 NYL 369 (600)
Q Consensus 367 ~~l 369 (600)
..+
T Consensus 150 ~~~ 152 (305)
T 2gno_A 150 EKI 152 (305)
T ss_dssp HHH
T ss_pred HHh
Confidence 766
No 81
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.22 E-value=1.5e-12 Score=146.32 Aligned_cols=128 Identities=20% Similarity=0.229 Sum_probs=88.0
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEEEec----CccCChhHHHHHHhhC----------CCcceeeecchhhhhhhh
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNLNL----SVVTSDSSLEYLLLHV----------PNRSILVVEDIDCSIKLQ 286 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~l~~----~~~~~~~~l~~~~~~~----------~~~sIL~iDeiD~l~~~~ 286 (600)
++||+||||||||++|+++|+.++...+.... ..+.. ......+... ..++|+||||||.+..
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~-~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~-- 405 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTA-AVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRD-- 405 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEE-ECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCS--
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccc-eeeeccccccccccCCeeEecCCCcEEeehhhhCCH--
Confidence 79999999999999999999999877665321 22110 0000001110 1468999999998732
Q ss_pred ccccCCCCCCCCCCCChHHHHHHHHHhhcCc---------cccCCCeeEEEEecCCcC-------------cCCHHHHhc
Q 041382 287 NRESQKGDEPADSYRGPQVTLAGLLNAIDGL---------LCCCGDEKITVFTTNYKD-------------RIDPALLRA 344 (600)
Q Consensus 287 ~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~---------~~~~~~~~iiI~TTN~~~-------------~Ld~aLlrp 344 (600)
...+.|+..|+.- ....+..+.+|+|||.+. .|+++|++
T Consensus 406 ------------------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~- 466 (595)
T 3f9v_A 406 ------------------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS- 466 (595)
T ss_dssp ------------------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG-
T ss_pred ------------------hHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh-
Confidence 2456677777532 112223578999999886 89999999
Q ss_pred CCcce-EEEeCCCCHHHHHHHHHHhcCcC
Q 041382 345 GRMDR-HINLSYCTFSTFKQLAANYLDIN 372 (600)
Q Consensus 345 gRfd~-~I~~~~p~~e~r~~il~~~l~~~ 372 (600)
|||. .+..++|+.+ ...|++..+...
T Consensus 467 -RFDl~~~~~~~~~~e-~~~i~~~il~~~ 493 (595)
T 3f9v_A 467 -RFDLIFILKDQPGEQ-DRELANYILDVH 493 (595)
T ss_dssp -GCSCCEEECCTTHHH-HHHHHHHHHTTT
T ss_pred -hCeEEEEeCCCCCHH-HHHHHHHHHHHh
Confidence 9984 5666888888 888888877653
No 82
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.21 E-value=3.6e-11 Score=152.74 Aligned_cols=137 Identities=22% Similarity=0.309 Sum_probs=97.7
Q ss_pred CcceeeeCCCCCCHHHHH-HHHHHHcCCcEEEEecCccCChhHHHHHHhhC-----------------CCcceeeecchh
Q 041382 219 KRGYLLYGPPGTGKSSLI-AAMANYMNYDIYNLNLSVVTSDSSLEYLLLHV-----------------PNRSILVVEDID 280 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla-~alA~~l~~~~~~l~~~~~~~~~~l~~~~~~~-----------------~~~sIL~iDeiD 280 (600)
++++||+||||||||++| +++++..+..++.++++...+...+...+... ..++||||||||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEin 1346 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEIN 1346 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecccc
Confidence 469999999999999999 55555558889999998888776666655431 134799999998
Q ss_pred hhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCC------CeeEEEEecCCcC-----cCCHHHHhcCCcce
Q 041382 281 CSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCG------DEKITVFTTNYKD-----RIDPALLRAGRMDR 349 (600)
Q Consensus 281 ~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~------~~~iiI~TTN~~~-----~Ld~aLlrpgRfd~ 349 (600)
.... ++. +.......+.+++ ...|++.... .++.+|+|||++. .|+|+|+| || .
T Consensus 1347 mp~~--d~y---------g~q~~lelLRq~l-e~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~ 1411 (2695)
T 4akg_A 1347 LPKL--DKY---------GSQNVVLFLRQLM-EKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-A 1411 (2695)
T ss_dssp CSCC--CSS---------SCCHHHHHHHHHH-HTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-E
T ss_pred cccc--ccc---------CchhHHHHHHHHH-hcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-e
Confidence 5321 111 1122233344443 2234433211 2478999999995 79999999 99 7
Q ss_pred EEEeCCCCHHHHHHHHHHhcC
Q 041382 350 HINLSYCTFSTFKQLAANYLD 370 (600)
Q Consensus 350 ~I~~~~p~~e~r~~il~~~l~ 370 (600)
.|.++.|+.+++..|+..++.
T Consensus 1412 vi~i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1412 ILYLGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp EEECCCCTTTHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHH
Confidence 899999999999999988764
No 83
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.19 E-value=3.3e-10 Score=120.62 Aligned_cols=164 Identities=10% Similarity=0.074 Sum_probs=107.5
Q ss_pred CccccccChhHHHHHHHHH-HHHHhCHHHHHHhCCCCCcceee--eCCCCCCHHHHHHHHHHHc---------CCcEEEE
Q 041382 183 TFGTLVMDGDLKETVLNDL-DCFRRGKEYYRKIGKVWKRGYLL--YGPPGTGKSSLIAAMANYM---------NYDIYNL 250 (600)
Q Consensus 183 ~f~~l~g~~~~k~~i~~~l-~~~l~~~~~y~~~g~~~~rgiLL--~GppGtGKTsla~alA~~l---------~~~~~~l 250 (600)
..+.++|.++..+.+.+.+ ....... ...++.++| +||||||||++++++++.+ +..++.+
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~-------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGA-------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSS-------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCC-------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 3477999999888888877 5443210 012457899 9999999999999999876 4567788
Q ss_pred ecCccCChh----------------------H----HHHHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChH
Q 041382 251 NLSVVTSDS----------------------S----LEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQ 304 (600)
Q Consensus 251 ~~~~~~~~~----------------------~----l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~ 304 (600)
+|....+.. . +...+.....|.||+|||+|.+.. .+ ....
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~--~~------------~~~~ 158 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLS--SP------------RIAA 158 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHS--CT------------TSCH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhh--cc------------Ccch
Confidence 864322111 1 122222234688999999999853 00 0122
Q ss_pred HHHHHHHHhhcCccccCC--CeeEEEEecCCcC---cCC---HHHHhcCCcceEEEeCCCCHHHHHHHHHHhcC
Q 041382 305 VTLAGLLNAIDGLLCCCG--DEKITVFTTNYKD---RID---PALLRAGRMDRHINLSYCTFSTFKQLAANYLD 370 (600)
Q Consensus 305 ~~ls~lL~~ldg~~~~~~--~~~iiI~TTN~~~---~Ld---~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~ 370 (600)
..+..++..++.... .+ ..+.+|+|||.++ .++ +.+.+ |+...|++++++.++..+++...+.
T Consensus 159 ~~l~~l~~~~~~~~~-~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~ 229 (412)
T 1w5s_A 159 EDLYTLLRVHEEIPS-RDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAE 229 (412)
T ss_dssp HHHHHHHTHHHHSCC-TTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccc-CCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHH
Confidence 345555555543310 12 4578888887655 344 66777 6666699999999999999986653
No 84
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.16 E-value=2.2e-11 Score=115.33 Aligned_cols=98 Identities=18% Similarity=0.230 Sum_probs=65.9
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc----CCcEEEEecCc
Q 041382 179 DHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM----NYDIYNLNLSV 254 (600)
Q Consensus 179 ~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l----~~~~~~l~~~~ 254 (600)
..+.+|+++++.....+.+.+.+..+.. ....+.+.+++|+||||||||++++++|+.+ |..++.+++..
T Consensus 4 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~ 77 (180)
T 3ec2_A 4 YWNANLDTYHPKNVSQNRALLTIRVFVH------NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKD 77 (180)
T ss_dssp CTTCCSSSCCCCSHHHHHHHHHHHHHHH------SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHH
T ss_pred hhhCccccccCCCHHHHHHHHHHHHHHH------hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 3567899998865555555566655543 3344456789999999999999999999987 66676776654
Q ss_pred cCCh-------hHHHHHHhhCCCcceeeecchhhh
Q 041382 255 VTSD-------SSLEYLLLHVPNRSILVVEDIDCS 282 (600)
Q Consensus 255 ~~~~-------~~l~~~~~~~~~~sIL~iDeiD~l 282 (600)
+... ......+....+|.+|+|||++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 78 LIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSE 112 (180)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSS
T ss_pred HHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCC
Confidence 4211 000122333347899999999753
No 85
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=99.01 E-value=2e-10 Score=121.78 Aligned_cols=121 Identities=20% Similarity=0.214 Sum_probs=87.8
Q ss_pred hCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCChhHHHHHHhhCCCcceeeecchhhhhhhhccccCCC
Q 041382 214 IGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKG 293 (600)
Q Consensus 214 ~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~ 293 (600)
.++++++.++|+||||+||||+++++|+.++..++.++... ......+....+..++++||++.+... .|+...
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~----~~~~~~lg~~~q~~~~l~dd~~~~~~~-~r~l~~- 237 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL----DRLNFELGVAIDQFLVVFEDVKGTGGE-SRDLPS- 237 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT----TTHHHHHGGGTTCSCEEETTCCCSTTT-TTTCCC-
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc----hhHHHHHHHhcchhHHHHHHHHHHHHH-Hhhccc-
Confidence 47888889999999999999999999999887766533221 223334555567888999999987542 111110
Q ss_pred CCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCC
Q 041382 294 DEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSY 355 (600)
Q Consensus 294 ~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~ 355 (600)
.....+...+.+.+||. +.++++||+++.+ +++++|||++..+...+
T Consensus 238 -------~~~~~~~~~l~~~ldG~-------v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 238 -------GQGINNLDNLRDYLDGS-------VKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp -------CSHHHHHHTTHHHHHCS-------SCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred -------cCcchHHHHHHHHhcCC-------CeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 11112456677888874 4578899999999 79999999998888766
No 86
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.98 E-value=5.5e-10 Score=107.42 Aligned_cols=97 Identities=19% Similarity=0.248 Sum_probs=63.1
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCC-CCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCcc
Q 041382 180 HPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKV-WKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVV 255 (600)
Q Consensus 180 ~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~-~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~ 255 (600)
.+.+|+++++.....+.+.+.+..+... .+.. .+++++|+||||||||++++++|+.+ +.+++.+++..+
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 93 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAE------YEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPEL 93 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHH------CCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHH------hhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHH
Confidence 4568999988665444455555544432 1111 12689999999999999999999988 677888877653
Q ss_pred CC-------hhHHHHHHhhCCCcceeeecchhhh
Q 041382 256 TS-------DSSLEYLLLHVPNRSILVVEDIDCS 282 (600)
Q Consensus 256 ~~-------~~~l~~~~~~~~~~sIL~iDeiD~l 282 (600)
.. ...+...+.....+.+|+|||++..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~lilDei~~~ 127 (202)
T 2w58_A 94 FRELKHSLQDQTMNEKLDYIKKVPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHHC---CCCHHHHHHHHHSSEEEEEEECCC
T ss_pred HHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 21 0011222222234579999999764
No 87
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.94 E-value=6.9e-10 Score=135.70 Aligned_cols=147 Identities=15% Similarity=0.120 Sum_probs=93.7
Q ss_pred CCccccccChhHHHHHHHHHHHHHhC----------HHHHHH------hC------------CCCCcceeeeCCCCCCHH
Q 041382 182 MTFGTLVMDGDLKETVLNDLDCFRRG----------KEYYRK------IG------------KVWKRGYLLYGPPGTGKS 233 (600)
Q Consensus 182 ~~f~~l~g~~~~k~~i~~~l~~~l~~----------~~~y~~------~g------------~~~~rgiLL~GppGtGKT 233 (600)
.+|+++.|..+.|+.+++.+..++.. ++.|+. .| .|.++.+|+|||||||||
T Consensus 1017 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GKT 1096 (1706)
T 3cmw_A 1017 SSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKT 1096 (1706)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHH
T ss_pred ceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCChH
Confidence 68999999999999999999988843 445555 22 333344999999999999
Q ss_pred HHHHHHHHHc---CCcEEEEecCccC----------------------ChhHHHHHHhh--CCCcceeeecchhhhhhhh
Q 041382 234 SLIAAMANYM---NYDIYNLNLSVVT----------------------SDSSLEYLLLH--VPNRSILVVEDIDCSIKLQ 286 (600)
Q Consensus 234 sla~alA~~l---~~~~~~l~~~~~~----------------------~~~~l~~~~~~--~~~~sIL~iDeiD~l~~~~ 286 (600)
+||.++|.+. +-+.+.++..... ++..++.++.. ...||+|++|++|++.+.+
T Consensus 1097 ~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~~~ 1176 (1706)
T 3cmw_A 1097 TLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKA 1176 (1706)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHH
T ss_pred HHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCccc
Confidence 9999999866 4555555554421 24456555543 3579999999999998622
Q ss_pred ccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCc
Q 041382 287 NRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYK 334 (600)
Q Consensus 287 ~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~ 334 (600)
.-++..++ .......+.++++|..|++.....+ ++|| +||+.
T Consensus 1177 ~~~g~~~~---~~~~~~~r~~~q~l~~~~~~~~~~~--v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1177 EIEGEIGD---SHMGLAARMMSQAMRKLAGNLKQSN--TLLI-FINQI 1218 (1706)
T ss_dssp HHHSCTTC---CCTTHHHHHHHHHHHHHHHHHHHTT--CEEE-EEECE
T ss_pred cccccccc---ccccHHHHHHHHHHHHHHhhhccCC--eEEE-Eeccc
Confidence 21111111 1113445579999999999766543 6555 67754
No 88
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.94 E-value=2.4e-09 Score=103.17 Aligned_cols=115 Identities=21% Similarity=0.219 Sum_probs=71.0
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCChhHHHHHHhhCCCcceeeecchhhhhhhhccccCCCC
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGD 294 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~ 294 (600)
|+|.++++|||||||||||++|.++|+.++..++.+..+ ... ..+.......|++|||+|.-.-
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans----~s~--f~l~~l~~~kIiiLDEad~~~~---------- 117 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNS----TSH--FWLEPLTDTKVAMLDDATTTCW---------- 117 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCS----SSC--GGGGGGTTCSSEEEEEECHHHH----------
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEec----cch--hhhcccCCCCEEEEECCCchhH----------
Confidence 466677899999999999999999999997655432211 110 1122333456999999985321
Q ss_pred CCCCCCCChHHHHHHHHHhhcCcc----ccCC-----CeeEEEEecCC---cCcCCHHHHhcCCcceEEEeCCCC
Q 041382 295 EPADSYRGPQVTLAGLLNAIDGLL----CCCG-----DEKITVFTTNY---KDRIDPALLRAGRMDRHINLSYCT 357 (600)
Q Consensus 295 ~~~~~~~~~~~~ls~lL~~ldg~~----~~~~-----~~~iiI~TTN~---~~~Ld~aLlrpgRfd~~I~~~~p~ 357 (600)
...-..+-+.+||.. .... ...-+|.|||. .+.--+.|.+ |+ ..+.|+.|-
T Consensus 118 ---------~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~S--Ri-~~f~F~~~~ 180 (212)
T 1tue_A 118 ---------TYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLES--RI-TVFEFPNAF 180 (212)
T ss_dssp ---------HHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHT--SC-EEEECCSCC
T ss_pred ---------HHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhh--hE-EEEEcCCCC
Confidence 112234556677741 0110 12357889996 3333467888 88 578887543
No 89
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.91 E-value=3.5e-09 Score=119.27 Aligned_cols=54 Identities=30% Similarity=0.284 Sum_probs=43.5
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCC
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNY 245 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~ 245 (600)
...+|.+|++++|.+.+++.+...+. .+..++|+||||||||++++++|+.+..
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~---------------~g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAAN---------------QKRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHH---------------TTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred ccccccccceEECchhhHhhcccccc---------------CCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 45567899999999988876655442 1248999999999999999999998853
No 90
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.83 E-value=5.6e-09 Score=96.15 Aligned_cols=102 Identities=15% Similarity=0.150 Sum_probs=67.6
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCChhHHHHHHhhCCCcceeeecchhhhhhhhccccCCCC
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTSDSSLEYLLLHVPNRSILVVEDIDCSIKLQNRESQKGD 294 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~~~~l~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~ 294 (600)
.+..++|+||+|+|||+|++++++.+ |..++.++...+... ....++.+|+|||++.+.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-------~~~~~~~lLilDE~~~~~~---------- 97 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-------DAAFEAEYLAVDQVEKLGN---------- 97 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC-------GGGGGCSEEEEESTTCCCS----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH-------HHHhCCCEEEEeCccccCh----------
Confidence 34579999999999999999999988 777888888776544 1134689999999987532
Q ss_pred CCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecC-CcCcCC--HHHHhcCCcceE
Q 041382 295 EPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTN-YKDRID--PALLRAGRMDRH 350 (600)
Q Consensus 295 ~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN-~~~~Ld--~aLlrpgRfd~~ 350 (600)
..+..+-.+++.+ .... ..++|+||| .|..+. +.|.+ |+..-
T Consensus 98 -------~~~~~l~~li~~~---~~~g--~~~iiits~~~p~~l~~~~~L~S--Rl~~g 142 (149)
T 2kjq_A 98 -------EEQALLFSIFNRF---RNSG--KGFLLLGSEYTPQQLVIREDLRT--RMAYC 142 (149)
T ss_dssp -------HHHHHHHHHHHHH---HHHT--CCEEEEEESSCTTTSSCCHHHHH--HGGGS
T ss_pred -------HHHHHHHHHHHHH---HHcC--CcEEEEECCCCHHHccccHHHHH--HHhcC
Confidence 0123334444433 2221 123555666 455443 88888 77543
No 91
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.82 E-value=2e-09 Score=111.12 Aligned_cols=97 Identities=22% Similarity=0.325 Sum_probs=60.3
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcC----CcEEEEecCcc
Q 041382 180 HPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMN----YDIYNLNLSVV 255 (600)
Q Consensus 180 ~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~----~~~~~l~~~~~ 255 (600)
.+.+|+++.+.......+...+..|+.. .+..++.+++||||||||||+|+.++|+.+. .+++.+++..+
T Consensus 119 ~~~tfd~f~~~~~~~~~~~~~~~~~i~~------~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l 192 (308)
T 2qgz_A 119 RHIHLSDIDVNNASRMEAFSAILDFVEQ------YPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSF 192 (308)
T ss_dssp GSCCGGGSCCCSHHHHHHHHHHHHHHHH------CSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHH
T ss_pred HhCCHhhCcCCChHHHHHHHHHHHHHHh------ccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHH
Confidence 3478999987654444455555444431 1212357999999999999999999999764 77777776543
Q ss_pred CC-------hhHHHHHHhhCCCcceeeecchhhh
Q 041382 256 TS-------DSSLEYLLLHVPNRSILVVEDIDCS 282 (600)
Q Consensus 256 ~~-------~~~l~~~~~~~~~~sIL~iDeiD~l 282 (600)
.. ...+...+.......+|+|||++..
T Consensus 193 ~~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 193 AIDVKNAISNGSVKEEIDAVKNVPVLILDDIGAE 226 (308)
T ss_dssp HHHHHCCCC----CCTTHHHHTSSEEEEETCCC-
T ss_pred HHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 21 1111111122234679999999654
No 92
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.74 E-value=1.9e-07 Score=96.73 Aligned_cols=177 Identities=19% Similarity=0.082 Sum_probs=102.3
Q ss_pred CCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCcc-----C
Q 041382 182 MTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVV-----T 256 (600)
Q Consensus 182 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~-----~ 256 (600)
..-+.++|.++..+.+.+ +. . +.++++||+|+|||++++.+++.++.+++.+++... .
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~----~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LR----A------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYI 72 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TC----S------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCC
T ss_pred CCHHHhcChHHHHHHHHH-hc----C------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCC
Confidence 345678898877776655 42 1 379999999999999999999998877888887643 1
Q ss_pred Ch--------------------------------------------------hHHHHHHhhCC-Ccceeeecchhhhhhh
Q 041382 257 SD--------------------------------------------------SSLEYLLLHVP-NRSILVVEDIDCSIKL 285 (600)
Q Consensus 257 ~~--------------------------------------------------~~l~~~~~~~~-~~sIL~iDeiD~l~~~ 285 (600)
+. ..+...+.... .|.+|+|||++.+..
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~- 151 (357)
T 2fna_A 73 SYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVK- 151 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGG-
T ss_pred CHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhc-
Confidence 10 11112222222 388999999998843
Q ss_pred hccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHH--H-----hcCCcceEEEeCCCCH
Q 041382 286 QNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPAL--L-----RAGRMDRHINLSYCTF 358 (600)
Q Consensus 286 ~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aL--l-----rpgRfd~~I~~~~p~~ 358 (600)
. . .......+..+. +.. .++.+|+|++....+...+ . -.||+...|.+++.+.
T Consensus 152 --~--~--------~~~~~~~l~~~~---~~~-----~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~ 211 (357)
T 2fna_A 152 --L--R--------GVNLLPALAYAY---DNL-----KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSR 211 (357)
T ss_dssp --C--T--------TCCCHHHHHHHH---HHC-----TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCH
T ss_pred --c--C--------chhHHHHHHHHH---HcC-----CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCH
Confidence 0 0 011112222222 211 1355666665432111110 0 1347778999999999
Q ss_pred HHHHHHHHHhcCcCCCccHHHHHHHhhhcCCCHHHHHHH
Q 041382 359 STFKQLAANYLDINDHDLYCHIEKLMEKVKVSPAEVAGE 397 (600)
Q Consensus 359 e~r~~il~~~l~~~~~~~~~~i~~l~~~~~~t~a~i~~~ 397 (600)
++..+++...+......... ...+....+-.|..+...
T Consensus 212 ~e~~~~l~~~~~~~~~~~~~-~~~i~~~t~G~P~~l~~~ 249 (357)
T 2fna_A 212 EEAIEFLRRGFQEADIDFKD-YEVVYEKIGGIPGWLTYF 249 (357)
T ss_dssp HHHHHHHHHHHHHHTCCCCC-HHHHHHHHCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCc-HHHHHHHhCCCHHHHHHH
Confidence 99999988765321111111 133444444556555443
No 93
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.74 E-value=2.2e-08 Score=96.72 Aligned_cols=121 Identities=13% Similarity=0.098 Sum_probs=78.5
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHc--------C-CcEEEEecCccCC---------------------hhHHHHHHh-hC
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYM--------N-YDIYNLNLSVVTS---------------------DSSLEYLLL-HV 268 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l--------~-~~~~~l~~~~~~~---------------------~~~l~~~~~-~~ 268 (600)
-.+|++|+||||||++|.+++... | .++|..++..+.. ...+..++. ..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 367999999999999998875443 4 7777666554321 022222221 12
Q ss_pred CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcc
Q 041382 269 PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMD 348 (600)
Q Consensus 269 ~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd 348 (600)
..++||+|||++.+.+ .|... . .. ..++..+..- .....-||++|+.++.|+.++++ |++
T Consensus 86 ~~~~vliIDEAq~l~~--~~~~~-~-------e~-----~rll~~l~~~---r~~~~~iil~tq~~~~l~~~lr~--ri~ 145 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWP--ARSAG-S-------KI-----PENVQWLNTH---RHQGIDIFVLTQGPKLLDQNLRT--LVR 145 (199)
T ss_dssp GTTCEEEETTGGGTSB--CCCTT-C-------CC-----CHHHHGGGGT---TTTTCEEEEEESCGGGBCHHHHT--TEE
T ss_pred cCceEEEEEChhhhcc--Ccccc-c-------hh-----HHHHHHHHhc---CcCCeEEEEECCCHHHHhHHHHH--Hhh
Confidence 3489999999999864 22111 0 11 1255555432 12346778888889999999998 999
Q ss_pred eEEEeCCCCHHH
Q 041382 349 RHINLSYCTFST 360 (600)
Q Consensus 349 ~~I~~~~p~~e~ 360 (600)
.+++++.|....
T Consensus 146 ~~~~l~~~~~~~ 157 (199)
T 2r2a_A 146 KHYHIASNKMGM 157 (199)
T ss_dssp EEEEEEECSSCC
T ss_pred eEEEEcCcccCc
Confidence 999998765443
No 94
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.67 E-value=8.3e-09 Score=106.20 Aligned_cols=116 Identities=13% Similarity=0.178 Sum_probs=67.8
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEec--C----ccC-C-hhHHHHHHhhCC-Ccceeeecchhhhhhh
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNL--S----VVT-S-DSSLEYLLLHVP-NRSILVVEDIDCSIKL 285 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~--~----~~~-~-~~~l~~~~~~~~-~~sIL~iDeiD~l~~~ 285 (600)
|++.++.++|+||||||||+|+.++|...+.++..++. . .+. + +..+..+..... .+ +||||+++.+..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~-LLVIDsI~aL~~- 196 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR-VIVIDSLKNVIG- 196 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS-EEEEECCTTTC--
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC-EEEEeccccccc-
Confidence 45566678999999999999999999876655433333 1 111 1 122222222221 23 999999999853
Q ss_pred hccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHH
Q 041382 286 QNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALL 342 (600)
Q Consensus 286 ~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLl 342 (600)
.+... ...+.....+.+++..|+++....+ +.+|++|| +...|+++.
T Consensus 197 -~~~~~------s~~G~v~~~lrqlL~~L~~~~k~~g--vtVIlttn-p~s~deal~ 243 (331)
T 2vhj_A 197 -AAGGN------TTSGGISRGAFDLLSDIGAMAASRG--CVVIASLN-PTSNDDKIV 243 (331)
T ss_dssp -----------------CCHHHHHHHHHHHHHHHHHT--CEEEEECC-CSSCSSSHH
T ss_pred -ccccc------cccchHHHHHHHHHHHHHHHHhhCC--CEEEEEeC-CcccchhHH
Confidence 11110 0111223556778888877654433 67888888 556676653
No 95
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.66 E-value=7.1e-08 Score=122.99 Aligned_cols=126 Identities=14% Similarity=0.158 Sum_probs=94.1
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCChhHHHHHHhhCC-CcceeeecchhhhhhhhccccCCCCCCCC
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYLLLHVP-NRSILVVEDIDCSIKLQNRESQKGDEPAD 298 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~~~~l~~~~~~~~-~~sIL~iDeiD~l~~~~~r~~~~~~~~~~ 298 (600)
.|.+++||||||||++++++|+.+|.+++.++|+.-.+...+..+|..+. .++.+++||++.+-.
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~~~-------------- 711 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFNRLDE-------------- 711 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHHHHHHHHHHHHTCEEEEETTTSSCH--------------
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHhhHHHHHHHhcCCEeeehhhhhcCh--------------
Confidence 58899999999999999999999999999999999888888888887664 579999999987632
Q ss_pred CCCChHHHHHHHH----Hhh---------cCccccCCCeeEEEEecC----CcCcCCHHHHhcCCcceEEEeCCCCHHHH
Q 041382 299 SYRGPQVTLAGLL----NAI---------DGLLCCCGDEKITVFTTN----YKDRIDPALLRAGRMDRHINLSYCTFSTF 361 (600)
Q Consensus 299 ~~~~~~~~ls~lL----~~l---------dg~~~~~~~~~iiI~TTN----~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r 361 (600)
.....+++.+ +.+ +|..-.......+++|.| ....|+++|.+ || +.|.|..|+.+..
T Consensus 712 ---evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~i 785 (2695)
T 4akg_A 712 ---KVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGTI 785 (2695)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHHH
Confidence 1112222222 222 111001112356778888 45679999999 99 7999999999887
Q ss_pred HHHH
Q 041382 362 KQLA 365 (600)
Q Consensus 362 ~~il 365 (600)
.+|+
T Consensus 786 ~ei~ 789 (2695)
T 4akg_A 786 AEMI 789 (2695)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 96
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.64 E-value=2.6e-07 Score=118.61 Aligned_cols=134 Identities=18% Similarity=0.309 Sum_probs=91.1
Q ss_pred CcceeeeCCCCCCHHHHHHHHHH-HcCCcEEEEecCccCChhHHHHHHhh----------C--------CCcceeeecch
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMAN-YMNYDIYNLNLSVVTSDSSLEYLLLH----------V--------PNRSILVVEDI 279 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~-~l~~~~~~l~~~~~~~~~~l~~~~~~----------~--------~~~sIL~iDei 279 (600)
++.+||+||||||||++++.... ..+.+++.++++.-.+...+...+.. . .++.|+||||+
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDi 1383 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEI 1383 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEeccc
Confidence 35899999999999988765444 44777889999988877777666542 1 12369999999
Q ss_pred hhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhc--CccccCC------CeeEEEEecCCcC-----cCCHHHHhcCC
Q 041382 280 DCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAID--GLLCCCG------DEKITVFTTNYKD-----RIDPALLRAGR 346 (600)
Q Consensus 280 D~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ld--g~~~~~~------~~~iiI~TTN~~~-----~Ld~aLlrpgR 346 (600)
+.-. .+. .+ .+..+.-|...|| |++...+ .++.+|+|+|.+. .|+|+|+| |
T Consensus 1384 Nmp~----~D~-------yG---tQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~ 1447 (3245)
T 3vkg_A 1384 NLPS----TDK-------YG---TQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--H 1447 (3245)
T ss_dssp TCCC----CCT-------TS---CCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--T
T ss_pred CCCC----ccc-------cc---cccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--h
Confidence 8421 110 11 1223333333333 2222111 3478899999873 58999999 9
Q ss_pred cceEEEeCCCCHHHHHHHHHHhc
Q 041382 347 MDRHINLSYCTFSTFKQLAANYL 369 (600)
Q Consensus 347 fd~~I~~~~p~~e~r~~il~~~l 369 (600)
| ..|.+++|+.+....|+..++
T Consensus 1448 F-~vi~i~~ps~esL~~If~til 1469 (3245)
T 3vkg_A 1448 A-PILLVDFPSTSSLTQIYGTFN 1469 (3245)
T ss_dssp C-CEEECCCCCHHHHHHHHHHHH
T ss_pred c-eEEEeCCCCHHHHHHHHHHHH
Confidence 9 469999999999999977654
No 97
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.61 E-value=1.5e-06 Score=89.70 Aligned_cols=153 Identities=18% Similarity=0.101 Sum_probs=91.8
Q ss_pred CCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccC----
Q 041382 181 PMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT---- 256 (600)
Q Consensus 181 p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~---- 256 (600)
+..-+.++|.++..+.+.+.+.. | +.++++||+|+|||++++.+++..+ .+.+++....
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~ 70 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERG 70 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTT
T ss_pred CCChHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeeccccccc
Confidence 34456789999888888766532 1 4899999999999999999999886 6666654321
Q ss_pred --Ch------------------------------------hHHHHH---HhhC---CCcceeeecchhhhhhhhccccCC
Q 041382 257 --SD------------------------------------SSLEYL---LLHV---PNRSILVVEDIDCSIKLQNRESQK 292 (600)
Q Consensus 257 --~~------------------------------------~~l~~~---~~~~---~~~sIL~iDeiD~l~~~~~r~~~~ 292 (600)
+. ..+..+ +... ..|.+|+|||++.+....
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~------ 144 (350)
T 2qen_A 71 HITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYG------ 144 (350)
T ss_dssp CBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBT------
T ss_pred CCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccC------
Confidence 10 011111 1111 138999999999884200
Q ss_pred CCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCC---------HHHHhcCCcceEEEeCCCCHHHHHH
Q 041382 293 GDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRID---------PALLRAGRMDRHINLSYCTFSTFKQ 363 (600)
Q Consensus 293 ~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld---------~aLlrpgRfd~~I~~~~p~~e~r~~ 363 (600)
.......+..|-..++.. .++.+|+|+.....++ ..+ .||+...|++++.+.++..+
T Consensus 145 -------~~~~~~~~~~L~~~~~~~-----~~~~~il~g~~~~~l~~~l~~~~~~~~l--~~~~~~~i~l~pl~~~e~~~ 210 (350)
T 2qen_A 145 -------SRGGKELLALFAYAYDSL-----PNLKIILTGSEVGLLHDFLKITDYESPL--YGRIAGEVLVKPFDKDTSVE 210 (350)
T ss_dssp -------TTTTHHHHHHHHHHHHHC-----TTEEEEEEESSHHHHHHHHCTTCTTSTT--TTCCCEEEECCCCCHHHHHH
T ss_pred -------ccchhhHHHHHHHHHHhc-----CCeEEEEECCcHHHHHHHHhhcCCCCcc--ccCccceeeCCCCCHHHHHH
Confidence 000112222222233321 2355666654321111 112 24776799999999999999
Q ss_pred HHHHhcC
Q 041382 364 LAANYLD 370 (600)
Q Consensus 364 il~~~l~ 370 (600)
++...+.
T Consensus 211 ~l~~~~~ 217 (350)
T 2qen_A 211 FLKRGFR 217 (350)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887654
No 98
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.60 E-value=2.2e-07 Score=93.36 Aligned_cols=59 Identities=17% Similarity=0.293 Sum_probs=39.6
Q ss_pred CCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCChhHHHHHHhhCCCcceeeecchhhh
Q 041382 217 VWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYLLLHVPNRSILVVEDIDCS 282 (600)
Q Consensus 217 ~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~sIL~iDeiD~l 282 (600)
+++.+++||||||||||+++.|+|+.++. .-.++.+. . ...+.....+.|++.||....
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l-~G~vn~~~----~--~f~l~~~~~k~i~l~Ee~~~~ 160 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNWTN----E--NFPFNDCVDKMVIWWEEGKMT 160 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC-EEECCTTC----S--SCTTGGGSSCSEEEECSCCEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc-cceeeccc----c--ccccccccccEEEEeccccch
Confidence 44668999999999999999999998754 22233221 1 123444456677777776543
No 99
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.47 E-value=1.5e-06 Score=91.70 Aligned_cols=152 Identities=18% Similarity=0.181 Sum_probs=96.3
Q ss_pred ccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCc--EEEEecCccCChhHHHH
Q 041382 186 TLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYD--IYNLNLSVVTSDSSLEY 263 (600)
Q Consensus 186 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~--~~~l~~~~~~~~~~l~~ 263 (600)
.++|......++...+..... ....+|++|++||||+.+++++....+.. ++.++|+.+.....-..
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a~-----------~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAK-----------SKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHT-----------SCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred cccccchHHHHHHhhhhhhhc-----------cchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 467777766666665543322 22469999999999999999999887544 99999998865444444
Q ss_pred HHhhC-----------------CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCc-cccCC---
Q 041382 264 LLLHV-----------------PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGL-LCCCG--- 322 (600)
Q Consensus 264 ~~~~~-----------------~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~-~~~~~--- 322 (600)
+|... .....||||||+.+-. .....||..++.- ...-|
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~--------------------~~Q~~Ll~~l~~~~~~~~g~~~ 258 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELADQGTLFLDEVGELDQ--------------------RVQAKLLRVLETGSFTRLGGNQ 258 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTTTSEEEEETGGGSCH--------------------HHHHHHHHHHHHSEECCBTCCC
T ss_pred hcCccccccCCcccccCChHhhcCCCeEEecChhhCCH--------------------HHHHHHHHHHHhCCcccCCCCc
Confidence 44221 2456899999998832 2445566666421 11111
Q ss_pred ---CeeEEEEecCCc-------CcCCHHHHhcCCcc-eEEEeCCCCH--HHHHHHHHHhcC
Q 041382 323 ---DEKITVFTTNYK-------DRIDPALLRAGRMD-RHINLSYCTF--STFKQLAANYLD 370 (600)
Q Consensus 323 ---~~~iiI~TTN~~-------~~Ld~aLlrpgRfd-~~I~~~~p~~--e~r~~il~~~l~ 370 (600)
-.+-+|+|||.. ..+.+.|.. |+. ..|++|+... +....|+..|+.
T Consensus 259 ~~~~~~rii~at~~~l~~~v~~g~fr~dL~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~ 317 (368)
T 3dzd_A 259 KIEVDIRVISATNKNLEEEIKKGNFREDLYY--RLSVFQIYLPPLRERGKDVILLAEYFLK 317 (368)
T ss_dssp BEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTSEEEECCCGGGSTTHHHHHHHHHHH
T ss_pred ceeeeeEEEEecCCCHHHHHHcCCccHHHHH--HhCCeEEeCCChhhchhhHHHHHHHHHH
Confidence 135577888742 123334443 332 3688888766 666777777664
No 100
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.46 E-value=1.6e-06 Score=92.26 Aligned_cols=154 Identities=16% Similarity=0.145 Sum_probs=95.6
Q ss_pred ccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcC---CcEEEEecCccCChhH
Q 041382 184 FGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMN---YDIYNLNLSVVTSDSS 260 (600)
Q Consensus 184 f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~---~~~~~l~~~~~~~~~~ 260 (600)
++.++|.....+.+.+.+..... ....+|++|++||||+++|+++..... .+++.++|+.+....-
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~-----------~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~ 204 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISC-----------AECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIF 204 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTT-----------CCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcC-----------CCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHH
Confidence 44567776666677666654322 234689999999999999999998764 6899999998754332
Q ss_pred HHHHHhhC-----------------CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCc-cc---
Q 041382 261 LEYLLLHV-----------------PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGL-LC--- 319 (600)
Q Consensus 261 l~~~~~~~-----------------~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~-~~--- 319 (600)
-..+|... ...++||||||+.+-. .....||..++.- ..
T Consensus 205 ~~elfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~--------------------~~q~~Ll~~l~~~~~~~~g 264 (387)
T 1ny5_A 205 EAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSL--------------------EAQAKLLRVIESGKFYRLG 264 (387)
T ss_dssp HHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCH--------------------HHHHHHHHHHHHSEECCBT
T ss_pred HHHhcCCCCCCCCCcccccCCceeeCCCcEEEEcChhhCCH--------------------HHHHHHHHHHhcCcEEeCC
Confidence 23344221 2357999999998732 2344566665421 10
Q ss_pred ---cCCCeeEEEEecCCc-------CcCCHHHHhcCCc-ceEEEeCCCCH--HHHHHHHHHhcC
Q 041382 320 ---CCGDEKITVFTTNYK-------DRIDPALLRAGRM-DRHINLSYCTF--STFKQLAANYLD 370 (600)
Q Consensus 320 ---~~~~~~iiI~TTN~~-------~~Ld~aLlrpgRf-d~~I~~~~p~~--e~r~~il~~~l~ 370 (600)
...-++.+|+|||.. ..+.+.|.- |+ ...|++|+... +....|+..|+.
T Consensus 265 ~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~ 326 (387)
T 1ny5_A 265 GRKEIEVNVRILAATNRNIKELVKEGKFREDLYY--RLGVIEIEIPPLRERKEDIIPLANHFLK 326 (387)
T ss_dssp CCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTTEEEECCCGGGCHHHHHHHHHHHHH
T ss_pred CCceeeccEEEEEeCCCCHHHHHHcCCccHHHHH--hhcCCeecCCcchhccccHHHHHHHHHH
Confidence 001246688999862 233444443 43 34577776643 555666666654
No 101
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.36 E-value=3.7e-07 Score=98.16 Aligned_cols=141 Identities=14% Similarity=0.061 Sum_probs=83.2
Q ss_pred cccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHH-HHHcCCcEEEEecCccCChhHHHHH-
Q 041382 187 LVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAM-ANYMNYDIYNLNLSVVTSDSSLEYL- 264 (600)
Q Consensus 187 l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~al-A~~l~~~~~~l~~~~~~~~~~l~~~- 264 (600)
|.|++.+|..|.-.+..-. +. ....-++||.|+||| ||++++++ ++.+....|.-... .+...+...
T Consensus 215 I~G~e~vK~aLll~L~GG~--~k------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~--ss~~gLt~s~ 283 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCV--GK------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRR--TELTDLTAVL 283 (506)
T ss_dssp STTCHHHHHHHHHHHTTCC--SS------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGG--CCHHHHSEEE
T ss_pred cCCCHHHHHHHHHHHcCCc--cc------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCC--CCccCceEEE
Confidence 7888888877765442110 00 011126999999999 99999999 77766555442211 111111100
Q ss_pred -----H------hhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCcc-c----cCCCeeEEE
Q 041382 265 -----L------LHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLL-C----CCGDEKITV 328 (600)
Q Consensus 265 -----~------~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~-~----~~~~~~iiI 328 (600)
+ .......|+|+|||+.+- ..+.+.|+..|+.-. + .-+....||
T Consensus 284 r~~tG~~~~~G~l~LAdgGvl~lDEIn~~~--------------------~~~qsaLlEaMEe~~VtI~G~~lparf~VI 343 (506)
T 3f8t_A 284 KEDRGWALRAGAAVLADGGILAVDHLEGAP--------------------EPHRWALMEAMDKGTVTVDGIALNARCAVL 343 (506)
T ss_dssp EESSSEEEEECHHHHTTTSEEEEECCTTCC--------------------HHHHHHHHHHHHHSEEEETTEEEECCCEEE
T ss_pred EcCCCcccCCCeeEEcCCCeeehHhhhhCC--------------------HHHHHHHHHHHhCCcEEECCEEcCCCeEEE
Confidence 0 001246899999998763 246677887775210 0 112347899
Q ss_pred EecCCcC-----------cCCHHHHhcCCcceEEE-eCCCCHHH
Q 041382 329 FTTNYKD-----------RIDPALLRAGRMDRHIN-LSYCTFST 360 (600)
Q Consensus 329 ~TTN~~~-----------~Ld~aLlrpgRfd~~I~-~~~p~~e~ 360 (600)
+|+|..+ .|++++++ |||..+. +++|+.+.
T Consensus 344 AA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 344 AAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGE 385 (506)
T ss_dssp EEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC------
T ss_pred EEeCcccccCCCCCccccCCChHHhh--heeeEEEecCCCChhH
Confidence 9999765 88999999 9997655 47777655
No 102
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.32 E-value=1.9e-06 Score=110.67 Aligned_cols=123 Identities=13% Similarity=0.127 Sum_probs=91.8
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCccCChhHHHHHHhhCC-CcceeeecchhhhhhhhccccCCCCCCCC
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVTSDSSLEYLLLHVP-NRSILVVEDIDCSIKLQNRESQKGDEPAD 298 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~~~~~~l~~~~~~~~-~~sIL~iDeiD~l~~~~~r~~~~~~~~~~ 298 (600)
.|..++||+|||||.+++.+|+.+|.+++.++|+.-.+...+-++|..+. ..+..++|||+.+-.
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i~~G~~~~GaW~cfDEfNrl~~-------------- 670 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLEE-------------- 670 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHHHTCEEEEETTTSSCH--------------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHhhHhhcCcEEEehhhhcCCH--------------
Confidence 46789999999999999999999999999999998887777777776654 578899999987621
Q ss_pred CCCChHHHHHHHHHhhc-----------------CccccCCCeeEEEEecC----CcCcCCHHHHhcCCcceEEEeCCCC
Q 041382 299 SYRGPQVTLAGLLNAID-----------------GLLCCCGDEKITVFTTN----YKDRIDPALLRAGRMDRHINLSYCT 357 (600)
Q Consensus 299 ~~~~~~~~ls~lL~~ld-----------------g~~~~~~~~~iiI~TTN----~~~~Ld~aLlrpgRfd~~I~~~~p~ 357 (600)
.+++.+...+. |-.-.-..+..+++|.| ....||.+|.. || +.|.|+.||
T Consensus 671 ------~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd 741 (3245)
T 3vkg_A 671 ------RILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPD 741 (3245)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCC
T ss_pred ------HHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCC
Confidence 23333322221 21101112356788988 35689999999 99 789999999
Q ss_pred HHHHHHHH
Q 041382 358 FSTFKQLA 365 (600)
Q Consensus 358 ~e~r~~il 365 (600)
.+...+|+
T Consensus 742 ~~~i~ei~ 749 (3245)
T 3vkg_A 742 REMIAQVM 749 (3245)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98877664
No 103
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.14 E-value=3.2e-06 Score=104.88 Aligned_cols=112 Identities=14% Similarity=0.155 Sum_probs=71.2
Q ss_pred CCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCC----------------------hhHHHHHH--hhC
Q 041382 216 KVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTS----------------------DSSLEYLL--LHV 268 (600)
Q Consensus 216 ~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~----------------------~~~l~~~~--~~~ 268 (600)
++.+++++||||||||||+||.++|.+. |..+..++.....+ +..++.+. .+.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~ 1503 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1503 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhc
Confidence 7888899999999999999999998865 56677777654321 11222222 223
Q ss_pred CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCC
Q 041382 269 PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNY 333 (600)
Q Consensus 269 ~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~ 333 (600)
.+|++||||+++.+.+.....+..+ +.........++++|..|++.....+ ++ |.+||.
T Consensus 1504 ~~~~lVVIDsi~al~p~~~~~g~~~---~~~~~~~~R~lsqlL~~L~~~~~~~~--v~-VI~tNq 1562 (2050)
T 3cmu_A 1504 GAVDVIVVDSVAALTPKAEIEGEIG---DSHMGLAARMMSQAMRKLAGNLKQSN--TL-LIFINQ 1562 (2050)
T ss_dssp TCCSEEEESCGGGCCCHHHHHSCTT---CCCTTHHHHHHHHHHHHHHHHHHTTT--CE-EEEEEC
T ss_pred CCCCEEEEcChhHhccccccccccc---ccccchHHHHHHHHHHHHHHHHHhCC--cE-EEEEcc
Confidence 6899999999998875322111111 01111135677889999988876544 44 455553
No 104
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.87 E-value=4.4e-05 Score=72.01 Aligned_cols=27 Identities=22% Similarity=0.532 Sum_probs=23.2
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcE
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDI 247 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~ 247 (600)
.+.|.||+|+|||||++.|++.++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 367999999999999999999876443
No 105
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.78 E-value=5.5e-05 Score=78.57 Aligned_cols=125 Identities=13% Similarity=0.096 Sum_probs=82.1
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHc---CC-cEEEEecCccCChhHHHHHHhhC------CCcceeeecchhh-hhhhhc
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYM---NY-DIYNLNLSVVTSDSSLEYLLLHV------PNRSILVVEDIDC-SIKLQN 287 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l---~~-~~~~l~~~~~~~~~~l~~~~~~~------~~~sIL~iDeiD~-l~~~~~ 287 (600)
+..||||||+|+||++.++++++.+ +. +...+... ++..++.++..+ ...-|++|||+|. +..
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~--- 91 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID---PNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNA--- 91 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC---TTCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCT---
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec---CCCCHHHHHHHhcCcCCccCCeEEEEECCCCCCCh---
Confidence 4589999999999999999998865 32 22222222 223445444333 3567999999986 421
Q ss_pred cccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCC------cCcCCHHHHhcCCcceEEEeCCCCHHHH
Q 041382 288 RESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNY------KDRIDPALLRAGRMDRHINLSYCTFSTF 361 (600)
Q Consensus 288 r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~------~~~Ld~aLlrpgRfd~~I~~~~p~~e~r 361 (600)
...+.|+..++... ...++|++|+. ...+.+++.+ |. ..+.+..++.++.
T Consensus 92 -----------------~~~~aLl~~le~p~----~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l 147 (343)
T 1jr3_D 92 -----------------AINEQLLTLTGLLH----DDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQL 147 (343)
T ss_dssp -----------------THHHHHHHHHTTCB----TTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHH
T ss_pred -----------------HHHHHHHHHHhcCC----CCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHH
Confidence 14456777776542 23445544443 2456788887 66 5899999999888
Q ss_pred HHHHHHhcCcCC
Q 041382 362 KQLAANYLDIND 373 (600)
Q Consensus 362 ~~il~~~l~~~~ 373 (600)
...++..+...+
T Consensus 148 ~~~l~~~~~~~g 159 (343)
T 1jr3_D 148 PRWVAARAKQLN 159 (343)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC
Confidence 888887775444
No 106
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.73 E-value=0.00016 Score=69.32 Aligned_cols=40 Identities=18% Similarity=0.153 Sum_probs=33.0
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCc
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSV 254 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~ 254 (600)
|++.+.-++|+||||+|||+++..+|...+.+++.++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 5666677899999999999999999986567777777654
No 107
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.70 E-value=0.00053 Score=76.34 Aligned_cols=50 Identities=24% Similarity=0.192 Sum_probs=37.0
Q ss_pred CCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHH
Q 041382 181 PMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMAN 241 (600)
Q Consensus 181 p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~ 241 (600)
|.....++|.+...+.|.+.+..- ....+-++++||+|+|||+||..+++
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCCCCeecccHHHHHHHHHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 444567899998888887765310 11235689999999999999998864
No 108
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.52 E-value=0.00019 Score=69.97 Aligned_cols=40 Identities=15% Similarity=0.109 Sum_probs=31.8
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHH--c-------CCcEEEEecCc
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANY--M-------NYDIYNLNLSV 254 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~--l-------~~~~~~l~~~~ 254 (600)
|++.+.-++|+||||+|||+++..+|.. + +...+.++...
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 5666677899999999999999999995 3 45677776554
No 109
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.52 E-value=0.00022 Score=74.65 Aligned_cols=105 Identities=13% Similarity=0.079 Sum_probs=61.5
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCC---------------------hhHHHHHHh---h
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTS---------------------DSSLEYLLL---H 267 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~---------------------~~~l~~~~~---~ 267 (600)
|++.+.-++|+||||+|||+|+..+|..+ +..++.++...... ...+...+. .
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 56666678999999999999999999875 56777777654221 111111111 2
Q ss_pred CCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCC
Q 041382 268 VPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCG 322 (600)
Q Consensus 268 ~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~ 322 (600)
...+.+++||.+-.+.+...-.+..++ .........+++++..|..+....+
T Consensus 137 ~~~~dlvVIDSi~~l~~~~el~g~~G~---~q~~~qar~la~~L~~L~~lak~~~ 188 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVPRAEIEGAMGD---MQVGLQARLMSQALRKIAGSVNKSK 188 (356)
T ss_dssp TSCCSEEEEECTTTCCCHHHHTTCCCS---SCSSHHHHHHHHHHHHHHHHHHTSS
T ss_pred hcCCCeEEehHhhhhcChhhhcccchh---hHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 246889999999887641111111110 0001123556777777666654433
No 110
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.50 E-value=7.8e-05 Score=69.35 Aligned_cols=33 Identities=18% Similarity=0.340 Sum_probs=29.7
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCcEEEEec
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNL 252 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~ 252 (600)
.-++|.||||+||||+++++|..++.+++.++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEecc
Confidence 468999999999999999999999988887664
No 111
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.49 E-value=4.9e-05 Score=71.29 Aligned_cols=33 Identities=24% Similarity=0.355 Sum_probs=29.6
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
++.++|.|||||||||+++.+|..++.++++.|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 357899999999999999999999999988654
No 112
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.48 E-value=0.00014 Score=75.08 Aligned_cols=40 Identities=15% Similarity=0.176 Sum_probs=33.0
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHc---------CCcEEEEecCc
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYM---------NYDIYNLNLSV 254 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l---------~~~~~~l~~~~ 254 (600)
|++.+.-++|+||||+|||+++..+|... +..++.++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 56777778999999999999999999875 55677777654
No 113
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.47 E-value=0.00047 Score=66.43 Aligned_cols=37 Identities=22% Similarity=0.111 Sum_probs=28.6
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEe
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLN 251 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~ 251 (600)
|++.+..++|+||||+|||++++.+|..+ +..++.++
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45666678999999999999999999754 45555554
No 114
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.44 E-value=0.0007 Score=73.31 Aligned_cols=63 Identities=21% Similarity=0.179 Sum_probs=38.7
Q ss_pred cCCCCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc---CC-cEEEEec
Q 041382 177 NLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM---NY-DIYNLNL 252 (600)
Q Consensus 177 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l---~~-~~~~l~~ 252 (600)
+-..|.+|+.+ .+++++.+...+ .++.. ..+.+++.||||||||+++.+++..+ +. .++.+..
T Consensus 16 ~~~~p~~~~~L--n~~Q~~av~~~~-~~i~~----------~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~ 82 (459)
T 3upu_A 16 PRGSHMTFDDL--TEGQKNAFNIVM-KAIKE----------KKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAP 82 (459)
T ss_dssp -----CCSSCC--CHHHHHHHHHHH-HHHHS----------SSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred cccCCCccccC--CHHHHHHHHHHH-HHHhc----------CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecC
Confidence 67778899876 445555554433 22222 12378999999999999999999887 33 4555443
No 115
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.44 E-value=0.0002 Score=74.91 Aligned_cols=69 Identities=14% Similarity=0.195 Sum_probs=47.6
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCC---------------------hhHHHHH---Hhh
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTS---------------------DSSLEYL---LLH 267 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~---------------------~~~l~~~---~~~ 267 (600)
|++.++-++|+||||+|||+|+..+|..+ +..+..++...... ...+... +..
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 56666779999999999999999998754 56777776543211 1111111 222
Q ss_pred CCCcceeeecchhhhh
Q 041382 268 VPNRSILVVEDIDCSI 283 (600)
Q Consensus 268 ~~~~sIL~iDeiD~l~ 283 (600)
...|.+|+||++..+.
T Consensus 137 ~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 137 SGALDIIVIDSVAALV 152 (349)
T ss_dssp TTCCSEEEEECGGGCC
T ss_pred cCCCCEEEEcChHhhc
Confidence 3468999999999886
No 116
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.44 E-value=6.8e-05 Score=71.60 Aligned_cols=34 Identities=29% Similarity=0.332 Sum_probs=29.8
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
.+..++|.|||||||||+++++|..++.+++..+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 3457899999999999999999999999887654
No 117
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.41 E-value=6.7e-05 Score=70.59 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=29.2
Q ss_pred CCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 041382 217 VWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNL 250 (600)
Q Consensus 217 ~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l 250 (600)
+.+.-++|.|+||+||||+++.+|..++.+++..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 3455789999999999999999999999887653
No 118
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.37 E-value=0.00016 Score=68.49 Aligned_cols=63 Identities=10% Similarity=0.161 Sum_probs=37.5
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecC--------ccCC----------hhHHHHHHhhCC-Ccceeeec
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLS--------VVTS----------DSSLEYLLLHVP-NRSILVVE 277 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~--------~~~~----------~~~l~~~~~~~~-~~sIL~iD 277 (600)
.-++++||||+|||+++..++..+ +.+++.+... .+.+ ......++.... .+.+|+||
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~~~~dvviID 83 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIEEDTRGVFID 83 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCCTTEEEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhcCCCCEEEEE
Confidence 357899999999999996666543 5555443211 0000 011222333333 46799999
Q ss_pred chhhh
Q 041382 278 DIDCS 282 (600)
Q Consensus 278 eiD~l 282 (600)
|+..+
T Consensus 84 E~Q~~ 88 (184)
T 2orw_A 84 EVQFF 88 (184)
T ss_dssp CGGGS
T ss_pred CcccC
Confidence 99865
No 119
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.37 E-value=0.00046 Score=72.55 Aligned_cols=69 Identities=16% Similarity=0.173 Sum_probs=48.3
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCC---------------------hhHHHHHHh---h
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTS---------------------DSSLEYLLL---H 267 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~---------------------~~~l~~~~~---~ 267 (600)
|++.++.++|+||||+|||+++..+|..+ +.+++.++...-.. ...+...+. .
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 56777789999999999999999888764 56777777654211 112222222 2
Q ss_pred CCCcceeeecchhhhh
Q 041382 268 VPNRSILVVEDIDCSI 283 (600)
Q Consensus 268 ~~~~sIL~iDeiD~l~ 283 (600)
...+.+||||.+..+.
T Consensus 150 ~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALT 165 (366)
T ss_dssp TTCCSEEEEECTTTCC
T ss_pred cCCCCEEEEeChHHhc
Confidence 2468899999999885
No 120
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.30 E-value=0.00036 Score=73.15 Aligned_cols=69 Identities=14% Similarity=0.159 Sum_probs=49.0
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCC---------------------hhHHHHHHh---h
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTS---------------------DSSLEYLLL---H 267 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~---------------------~~~l~~~~~---~ 267 (600)
|++.++.++|+||||+|||+++..+|..+ +.+++.++.....+ ...+...+. .
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 57777789999999999999999988764 66788887643211 122222222 2
Q ss_pred CCCcceeeecchhhhh
Q 041382 268 VPNRSILVVEDIDCSI 283 (600)
Q Consensus 268 ~~~~sIL~iDeiD~l~ 283 (600)
...+.+||||.+..+.
T Consensus 139 ~~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 139 SGAVDVIVVDSVAALT 154 (356)
T ss_dssp HTCCSEEEEECGGGCC
T ss_pred ccCCCEEEEcCHHHhc
Confidence 2468899999999885
No 121
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.30 E-value=0.00014 Score=67.02 Aligned_cols=31 Identities=26% Similarity=0.303 Sum_probs=28.1
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
-++|.||||+||||+++.+|..++++++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4789999999999999999999999887665
No 122
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.29 E-value=0.00051 Score=71.54 Aligned_cols=40 Identities=18% Similarity=0.057 Sum_probs=32.4
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHc---------CCcEEEEecCc
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYM---------NYDIYNLNLSV 254 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l---------~~~~~~l~~~~ 254 (600)
|++.+.-++|+||||+|||+++..+|... +..++.++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 56666678999999999999999999862 55677777655
No 123
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.28 E-value=0.00047 Score=85.83 Aligned_cols=70 Identities=16% Similarity=0.177 Sum_probs=53.1
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCCh------------------------hHHHHHHhh
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTSD------------------------SSLEYLLLH 267 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~~------------------------~~l~~~~~~ 267 (600)
|++.++.++|+||||||||+|+.+++.+. |.+.+.+++...... ..+...+..
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 57788899999999999999999988753 778888887765321 122233444
Q ss_pred CCCcceeeecchhhhhh
Q 041382 268 VPNRSILVVEDIDCSIK 284 (600)
Q Consensus 268 ~~~~sIL~iDeiD~l~~ 284 (600)
...|.+|+||++..+.+
T Consensus 1157 ~~~~dlvVIDsl~~L~~ 1173 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALTP 1173 (2050)
T ss_dssp HTCCSEEEESCGGGCCC
T ss_pred hCCCCEEEECCcccccc
Confidence 56799999999999854
No 124
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.27 E-value=0.00013 Score=68.34 Aligned_cols=31 Identities=26% Similarity=0.473 Sum_probs=28.2
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
-++|.|+||+||||+++.+|..+|.++++.|
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 5899999999999999999999999987654
No 125
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.27 E-value=0.00012 Score=68.15 Aligned_cols=31 Identities=26% Similarity=0.414 Sum_probs=27.6
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
.++|.|||||||||+++++|..++.++++.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d 36 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSD 36 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEccc
Confidence 5889999999999999999999998877543
No 126
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.26 E-value=0.00013 Score=68.24 Aligned_cols=33 Identities=30% Similarity=0.442 Sum_probs=28.8
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
++.++|.||||+||||+++++|..++..++..+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d 43 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINVG 43 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHH
Confidence 346999999999999999999999998877553
No 127
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.26 E-value=0.0016 Score=78.37 Aligned_cols=145 Identities=16% Similarity=0.132 Sum_probs=85.9
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc-------CCcEEEEec
Q 041382 180 HPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM-------NYDIYNLNL 252 (600)
Q Consensus 180 ~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l-------~~~~~~l~~ 252 (600)
.|.....++|.++..++|.+.+... -...+-+.|+|++|+|||+||+.+++.. ...++.+++
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~ 187 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSI 187 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEEC
T ss_pred CCCCCceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEE
Confidence 4555667899999888888766311 1123467899999999999999988752 223445555
Q ss_pred CccCC---------------------------hhHHH----HHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCC
Q 041382 253 SVVTS---------------------------DSSLE----YLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYR 301 (600)
Q Consensus 253 ~~~~~---------------------------~~~l~----~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~ 301 (600)
+.... ...+. ..+....++.+|+|||++....
T Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~----------------- 250 (1249)
T 3sfz_A 188 GKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWV----------------- 250 (1249)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHH-----------------
T ss_pred CCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHH-----------------
Confidence 44211 01111 1111113488999999974311
Q ss_pred ChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCCHHHHhcCCcceEEEeCC-CCHHHHHHHHHHhcCcC
Q 041382 302 GPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRIDPALLRAGRMDRHINLSY-CTFSTFKQLAANYLDIN 372 (600)
Q Consensus 302 ~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld~aLlrpgRfd~~I~~~~-p~~e~r~~il~~~l~~~ 372 (600)
+ +.+ +.+.-||+||..+.-... + ......+.++. .+.++-.+++..+....
T Consensus 251 ---------~---~~~----~~~~~ilvTtR~~~~~~~-~---~~~~~~~~~~~~l~~~~a~~l~~~~~~~~ 302 (1249)
T 3sfz_A 251 ---------L---KAF----DNQCQILLTTRDKSVTDS-V---MGPKHVVPVESGLGREKGLEILSLFVNMK 302 (1249)
T ss_dssp ---------H---TTT----CSSCEEEEEESSTTTTTT-C---CSCBCCEECCSSCCHHHHHHHHHHHHTSC
T ss_pred ---------H---Hhh----cCCCEEEEEcCCHHHHHh-h---cCCceEEEecCCCCHHHHHHHHHHhhCCC
Confidence 1 111 122456778875533211 1 12345678875 88888888888776543
No 128
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.26 E-value=0.0005 Score=71.80 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=32.1
Q ss_pred hCCCCCcceeeeCCCCCCHHHHHHHHHHHc---------CCcEEEEecCc
Q 041382 214 IGKVWKRGYLLYGPPGTGKSSLIAAMANYM---------NYDIYNLNLSV 254 (600)
Q Consensus 214 ~g~~~~rgiLL~GppGtGKTsla~alA~~l---------~~~~~~l~~~~ 254 (600)
.|++.+.-+.|+||||+|||+|+..+|... +..++.++...
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 367777778999999999999999999987 23556666543
No 129
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.24 E-value=0.00014 Score=67.05 Aligned_cols=32 Identities=25% Similarity=0.433 Sum_probs=29.1
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
..++|.|+|||||||+++.+|..+|.++++.|
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 37899999999999999999999999988654
No 130
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.22 E-value=0.00067 Score=68.23 Aligned_cols=29 Identities=31% Similarity=0.273 Sum_probs=24.2
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHc
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l 243 (600)
|++.+.-++|+||||+|||+|+..+|..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45555678999999999999999998754
No 131
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.22 E-value=0.00015 Score=68.22 Aligned_cols=33 Identities=27% Similarity=0.461 Sum_probs=28.2
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHH-cCCcEEEEe
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANY-MNYDIYNLN 251 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~-l~~~~~~l~ 251 (600)
+..++|.|+|||||||+++.+|.. +|++++++|
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 346899999999999999999999 787776654
No 132
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.21 E-value=0.00017 Score=66.60 Aligned_cols=30 Identities=37% Similarity=0.707 Sum_probs=26.6
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCcEEE
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIYN 249 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~~~~ 249 (600)
..+.|.|||||||||+++.+|..++.+++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 468999999999999999999999976654
No 133
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.17 E-value=0.00087 Score=65.47 Aligned_cols=26 Identities=35% Similarity=0.399 Sum_probs=22.8
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHH
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMA 240 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA 240 (600)
|++.+.-+.|.||+|+|||||++.++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 45666678999999999999999998
No 134
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.14 E-value=0.00052 Score=69.65 Aligned_cols=35 Identities=29% Similarity=0.430 Sum_probs=28.8
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEec
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNL 252 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~ 252 (600)
.+.-++|.||||+||||+++.++..++...+.++.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 34568899999999999999999998555666664
No 135
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.14 E-value=0.00023 Score=67.73 Aligned_cols=32 Identities=28% Similarity=0.474 Sum_probs=28.3
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
.-++|.||||+||||+++.+|..++.+++..+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d 52 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTG 52 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 35889999999999999999999998877653
No 136
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.13 E-value=0.00097 Score=68.36 Aligned_cols=117 Identities=13% Similarity=0.074 Sum_probs=61.0
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHc-----CCcEEEEecCccC---------------------ChhHH-HHH---
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYM-----NYDIYNLNLSVVT---------------------SDSSL-EYL--- 264 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l-----~~~~~~l~~~~~~---------------------~~~~l-~~~--- 264 (600)
|++.+ -++++||||+|||+|+-.++..+ +..+..++...-. +...+ ..+
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 45555 57899999999999987666543 5667777754321 11122 111
Q ss_pred H--hhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCc
Q 041382 265 L--LHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDR 336 (600)
Q Consensus 265 ~--~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~ 336 (600)
+ ....+|.+|+||-|-.+.+...-.+..++. .-..-...+.++++|..|-++....+ +. ++-||+...
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~-~~gsv~qaR~~s~~LrkL~~~ak~~~--i~-vi~tNQV~k 173 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASKKETEDALNEK-VVSDMTRAKTMKSLFRIVTPYFSTKN--IP-CIAINHTYE 173 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC---------------CTHHHHHHHHHHHHHHHHHHTT--CE-EEEEEEC--
T ss_pred HHHhhccCceEEEEecccccccchhccCccccc-cccHHHHHHHHHHHHHHHHHHHHHhC--CE-EEEECCeee
Confidence 2 122468999999999886311100000000 00011344566777766655544443 33 344555443
No 137
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.13 E-value=0.0002 Score=66.15 Aligned_cols=31 Identities=16% Similarity=0.414 Sum_probs=27.8
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
-++|.|+||+||||+++.+|..++.++++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~d 34 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVDTD 34 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEccc
Confidence 5899999999999999999999998877644
No 138
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.11 E-value=0.00026 Score=70.50 Aligned_cols=32 Identities=25% Similarity=0.484 Sum_probs=29.1
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEEEec
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNLNL 252 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~l~~ 252 (600)
-++|.|||||||||+++++|..++..++..|.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999999887764
No 139
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.10 E-value=0.00022 Score=66.88 Aligned_cols=31 Identities=23% Similarity=0.374 Sum_probs=27.3
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIYNL 250 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~~~~l 250 (600)
.-++|.|+|||||||+++.+|..++.+++..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 4688999999999999999999999877654
No 140
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.09 E-value=0.00023 Score=65.19 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=25.9
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNL 250 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~l 250 (600)
-++|.||||+||||+++.+ ..+|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5789999999999999999 8899887764
No 141
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.06 E-value=0.00022 Score=69.00 Aligned_cols=31 Identities=19% Similarity=0.366 Sum_probs=27.7
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIYNL 250 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~~~~l 250 (600)
.-++|.|+|||||||+++.+|..++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4588999999999999999999999887765
No 142
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.05 E-value=0.00062 Score=70.03 Aligned_cols=28 Identities=18% Similarity=0.154 Sum_probs=24.6
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHH
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~ 242 (600)
|++.+.-++|+||||+|||+++..+|..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5666677899999999999999999875
No 143
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.05 E-value=0.00025 Score=66.74 Aligned_cols=32 Identities=19% Similarity=0.357 Sum_probs=28.3
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
.-++|.|||||||||+++.+|..++.+++..+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 46889999999999999999999998877654
No 144
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.05 E-value=0.00029 Score=64.75 Aligned_cols=31 Identities=23% Similarity=0.374 Sum_probs=27.6
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
.++|.|+||+||||+++.+|..++.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 32 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVD 32 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 3789999999999999999999998887644
No 145
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.04 E-value=0.00025 Score=66.39 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=28.6
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
+.-++|.|+|||||||+++.+|..++.++++.+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 38 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAG 38 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHH
Confidence 456899999999999999999999998776553
No 146
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.04 E-value=0.00026 Score=66.48 Aligned_cols=37 Identities=30% Similarity=0.384 Sum_probs=29.5
Q ss_pred CCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEec
Q 041382 216 KVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNL 252 (600)
Q Consensus 216 ~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~ 252 (600)
++.+.-+.|.||||+||||+++.+|+.++...+.++.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~ 42 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHS 42 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcc
Confidence 3445568899999999999999999987666665653
No 147
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.04 E-value=0.00034 Score=66.58 Aligned_cols=33 Identities=27% Similarity=0.384 Sum_probs=28.2
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
+.-++|.||||+||||+++.++..+|..++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d 50 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGD 50 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCC
Confidence 346899999999999999999999987776543
No 148
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.02 E-value=0.00024 Score=66.43 Aligned_cols=30 Identities=23% Similarity=0.584 Sum_probs=26.5
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNL 250 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~l 250 (600)
-++|.|||||||||+++.+|..++.+++..
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 588999999999999999999998776544
No 149
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.01 E-value=0.00027 Score=66.15 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=23.1
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
.-++|.||||+||||+++.+|..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3588999999999999999999987
No 150
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.99 E-value=0.00034 Score=67.28 Aligned_cols=30 Identities=20% Similarity=0.301 Sum_probs=27.0
Q ss_pred eeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 222 YLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
++|.|||||||||+++.+|..++.+++..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 32 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHISTG 32 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeHH
Confidence 789999999999999999999998877653
No 151
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.99 E-value=0.00029 Score=68.55 Aligned_cols=32 Identities=16% Similarity=0.342 Sum_probs=28.1
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMNYDIYNL 250 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~~~~~~l 250 (600)
+.-++|.||||+||||+++.+|..++.+++..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 34689999999999999999999999877654
No 152
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.99 E-value=0.0002 Score=66.31 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=23.2
Q ss_pred cceeeeCCCCCCHHHHHHHHHH-HcCCcE
Q 041382 220 RGYLLYGPPGTGKSSLIAAMAN-YMNYDI 247 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~-~l~~~~ 247 (600)
.-++|.||||+||||+++.++. .++..+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~ 31 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYN 31 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEE
Confidence 4689999999999999999999 455433
No 153
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.99 E-value=0.00034 Score=67.60 Aligned_cols=31 Identities=23% Similarity=0.410 Sum_probs=27.4
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIYNL 250 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~~~~l 250 (600)
.-++|.||||+||||+++.+|..++.+++..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 4688999999999999999999999877654
No 154
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.98 E-value=0.0003 Score=66.41 Aligned_cols=33 Identities=15% Similarity=0.334 Sum_probs=28.3
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
+.-+.|.||||+||||+++.+|..++.+++..+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 44 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTG 44 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 346899999999999999999999997776543
No 155
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.96 E-value=0.00069 Score=67.22 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=30.7
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCcc
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVV 255 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~ 255 (600)
.+..++|.||||+||||+++.++..++...+.++...+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 34568999999999999999999999866666665443
No 156
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.96 E-value=0.015 Score=64.34 Aligned_cols=44 Identities=20% Similarity=0.220 Sum_probs=34.4
Q ss_pred ccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHH
Q 041382 188 VMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMAN 241 (600)
Q Consensus 188 ~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~ 241 (600)
+|.++.+++|.+.+..- +....+.+.++|++|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 49999999998877421 112235788999999999999999997
No 157
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.95 E-value=0.00037 Score=66.96 Aligned_cols=30 Identities=20% Similarity=0.335 Sum_probs=26.8
Q ss_pred eeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 222 YLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
++|.||||+||||+++.+|..++.+++..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 32 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHISTG 32 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeHH
Confidence 789999999999999999999998877653
No 158
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.93 E-value=0.00067 Score=63.24 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=29.7
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEec
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNL 252 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~ 252 (600)
+.-+.|.|++|+||||+++.++..+ |.+++.++.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 3457899999999999999999998 888888773
No 159
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.91 E-value=0.0005 Score=63.75 Aligned_cols=30 Identities=27% Similarity=0.514 Sum_probs=26.0
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCcEEE
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIYN 249 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~~~~ 249 (600)
.-+.|.||||+||||+++.++..+|..++.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 458899999999999999999998866554
No 160
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.91 E-value=0.00041 Score=64.59 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=22.7
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCcEE
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIY 248 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~~~ 248 (600)
.-++|.|+||+||||+++.+|..++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 46889999999999999999999999877
No 161
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.90 E-value=0.00047 Score=65.53 Aligned_cols=32 Identities=16% Similarity=0.311 Sum_probs=27.7
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
.-++|.|+|||||||+++.+|..++.++++.+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 35889999999999999999999998776544
No 162
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.88 E-value=0.00056 Score=66.61 Aligned_cols=32 Identities=16% Similarity=0.391 Sum_probs=27.3
Q ss_pred CCCcceeeeCCCCCCHHHHHHHHHHHcCCcEE
Q 041382 217 VWKRGYLLYGPPGTGKSSLIAAMANYMNYDIY 248 (600)
Q Consensus 217 ~~~rgiLL~GppGtGKTsla~alA~~l~~~~~ 248 (600)
+.++-++|.||||+||+|.|+.||..+|.+.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 34567889999999999999999999986654
No 163
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.87 E-value=0.00051 Score=67.16 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=27.5
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIYNL 250 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~~~~l 250 (600)
..++|.|+|||||||+++.+|..++..++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 3689999999999999999999999877654
No 164
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.84 E-value=0.00033 Score=67.88 Aligned_cols=31 Identities=13% Similarity=0.235 Sum_probs=26.8
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcCCcEEE
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMNYDIYN 249 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~~~~~~ 249 (600)
+.-++|.||||+||||+++.+|..++..++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 3468999999999999999999999975544
No 165
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.81 E-value=0.00081 Score=64.03 Aligned_cols=30 Identities=20% Similarity=0.427 Sum_probs=25.6
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcCCcEE
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMNYDIY 248 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~~~~~ 248 (600)
+.-+.|.||+|+||||+++.+|+.+|..++
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 346889999999999999999999976544
No 166
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.81 E-value=0.00089 Score=62.69 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=28.1
Q ss_pred eeeeCCCCCCHHHHHHHHHHHc---CCcEEEEec
Q 041382 222 YLLYGPPGTGKSSLIAAMANYM---NYDIYNLNL 252 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l---~~~~~~l~~ 252 (600)
+.|.|+|||||||+++.++..+ |.+++..+.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~ 36 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE 36 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 6899999999999999999998 899888763
No 167
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.79 E-value=0.0006 Score=67.31 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=28.9
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
.+.-++|.||||+||||+++.++..++.+.++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~ 61 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTG 61 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecH
Confidence 3456899999999999999999999988776553
No 168
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.78 E-value=0.0023 Score=71.22 Aligned_cols=63 Identities=27% Similarity=0.345 Sum_probs=40.9
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccC----------ChhHHHHHHhhCC-----------Ccceee
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVT----------SDSSLEYLLLHVP-----------NRSILV 275 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~----------~~~~l~~~~~~~~-----------~~sIL~ 275 (600)
+.+++.||||||||+++.+++..+ +.++..+..+.-. ....+..++...+ ...+|+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI 284 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence 468899999999999999998865 5666655433211 1122333432111 346999
Q ss_pred ecchhhh
Q 041382 276 VEDIDCS 282 (600)
Q Consensus 276 iDeiD~l 282 (600)
|||+..+
T Consensus 285 IDEasml 291 (574)
T 3e1s_A 285 VDEVSMM 291 (574)
T ss_dssp ECCGGGC
T ss_pred EcCccCC
Confidence 9999755
No 169
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.78 E-value=0.0041 Score=60.65 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=27.4
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEec
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNL 252 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~ 252 (600)
-.+++.|+||||||+++-.+|..+ |.++..++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 368999999999999999999876 777766655
No 170
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.78 E-value=0.0026 Score=67.60 Aligned_cols=40 Identities=23% Similarity=0.106 Sum_probs=30.0
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHc---------CCcEEEEecCc
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYM---------NYDIYNLNLSV 254 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l---------~~~~~~l~~~~ 254 (600)
|++...-++|+||||+|||+|+..+|-.. +...+.++...
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 56667778999999999999999776432 23467776554
No 171
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.76 E-value=0.00055 Score=65.89 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=26.5
Q ss_pred eeeeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 041382 222 YLLYGPPGTGKSSLIAAMANYMNYDIYNL 250 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l~~~~~~l 250 (600)
++|.||||+||||+++.+|..++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 78999999999999999999999877665
No 172
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.75 E-value=0.00082 Score=69.25 Aligned_cols=36 Identities=22% Similarity=0.494 Sum_probs=31.5
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCc
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSV 254 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~ 254 (600)
++.++|.||+|||||+++..+|..++..++.+|.-.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q 40 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSAL 40 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence 347899999999999999999999998888887543
No 173
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.73 E-value=0.00087 Score=64.67 Aligned_cols=27 Identities=26% Similarity=0.528 Sum_probs=24.5
Q ss_pred eeeeCCCCCCHHHHHHHHHHHcCCcEE
Q 041382 222 YLLYGPPGTGKSSLIAAMANYMNYDIY 248 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l~~~~~ 248 (600)
++|.||||+||+|.|+.||..+|.+.+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~i 29 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHI 29 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEE
Confidence 688999999999999999999987654
No 174
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.68 E-value=0.001 Score=65.52 Aligned_cols=30 Identities=23% Similarity=0.484 Sum_probs=26.2
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcCCcEE
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMNYDIY 248 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~~~~~ 248 (600)
+.-+.|.||||+||||+++.||..+|...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 356899999999999999999999987654
No 175
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.65 E-value=0.0011 Score=64.39 Aligned_cols=29 Identities=21% Similarity=0.395 Sum_probs=25.8
Q ss_pred eeeeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 041382 222 YLLYGPPGTGKSSLIAAMANYMNYDIYNL 250 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l~~~~~~l 250 (600)
++|.||||+||||+++.+|..++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 78999999999999999999998766554
No 176
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.60 E-value=0.0012 Score=62.43 Aligned_cols=28 Identities=29% Similarity=0.702 Sum_probs=25.2
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEE
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIY 248 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~ 248 (600)
-+.|.|+|||||||+++.+|+.++..++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 3789999999999999999999998665
No 177
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.60 E-value=0.00071 Score=70.51 Aligned_cols=51 Identities=25% Similarity=0.408 Sum_probs=37.1
Q ss_pred ChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcEEE
Q 041382 190 DGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYN 249 (600)
Q Consensus 190 ~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~~~ 249 (600)
.+.+.+.++..+...+.. | ....++|.||||+||||+++++|+.++.+++.
T Consensus 4 ~~~L~~~il~~l~~~i~~-------g--~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 4 THKLADDVLQLLDNRIED-------N--YRVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp HHHHHHHHHHHHHHTTTT-------C--SCEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc-------C--CeeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 345666666666544431 1 12368999999999999999999999888744
No 178
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.60 E-value=0.021 Score=67.23 Aligned_cols=55 Identities=22% Similarity=0.192 Sum_probs=39.2
Q ss_pred ccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHH------cCCcEEEEecCc
Q 041382 188 VMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANY------MNYDIYNLNLSV 254 (600)
Q Consensus 188 ~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~------l~~~~~~l~~~~ 254 (600)
+|.+...++|.+.+... ...+-+.++||+|+|||+||+.+++. +...++-++++.
T Consensus 131 VGRe~eLeeL~elL~~~------------d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~ 191 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL------------RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC------------CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCC
T ss_pred CCcHHHHHHHHHHHhcc------------CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCC
Confidence 88888888888776420 11357889999999999999999863 344455555543
No 179
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.59 E-value=0.0013 Score=62.26 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=29.2
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHc-CCcEEEEecC
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYM-NYDIYNLNLS 253 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l-~~~~~~l~~~ 253 (600)
.-+.|.||||+||||+++.+|..+ |.+++.++..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~ 39 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFP 39 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 457899999999999999999999 6888877643
No 180
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.58 E-value=0.00083 Score=63.85 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=26.5
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
-+.|.||+||||||+++.+|+ +|.++++.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 478999999999999999999 888877665
No 181
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.58 E-value=0.0017 Score=61.67 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=26.6
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEe
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLN 251 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~ 251 (600)
+.-+.|.||+|+||||+++++|..+ |...+.++
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d 60 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILD 60 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEec
Confidence 4467899999999999999999988 54444555
No 182
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.57 E-value=0.02 Score=63.15 Aligned_cols=74 Identities=9% Similarity=0.115 Sum_probs=51.2
Q ss_pred ceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcC--cCCHHHHhcCCcce
Q 041382 272 SILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKD--RIDPALLRAGRMDR 349 (600)
Q Consensus 272 sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~--~Ld~aLlrpgRfd~ 349 (600)
.+|+|||++.++.... + .+...+..+-..... -++-+|++|.+|. .|+..+.. -|..
T Consensus 345 ivvVIDE~~~L~~~~~----------------~-~~~~~L~~Iar~GRa--~GIhLIlaTQRPs~d~I~~~Ira--n~~~ 403 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG----------------K-KVEELIARIAQKARA--AGIHLILATQRPSVDVITGLIKA--NIPT 403 (574)
T ss_dssp EEEEESCCTTHHHHTC----------------H-HHHHHHHHHHHHCTT--TTEEEEEEESCCCTTTSCHHHHH--TCCE
T ss_pred EEEEEeCHHHHhhhhh----------------H-HHHHHHHHHHHHHhh--CCeEEEEEecCcccccccHHHHh--hhcc
Confidence 5899999998864110 0 122233333222222 3488999999887 89999988 8889
Q ss_pred EEEeCCCCHHHHHHHHH
Q 041382 350 HINLSYCTFSTFKQLAA 366 (600)
Q Consensus 350 ~I~~~~p~~e~r~~il~ 366 (600)
.|.+...+..+-..++.
T Consensus 404 RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 404 RIAFQVSSKIDSRTILD 420 (574)
T ss_dssp EEEECCSCHHHHHHHHS
T ss_pred EEEEEcCCHHHHHHhcC
Confidence 99999999988877764
No 183
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.57 E-value=0.0016 Score=61.22 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=26.8
Q ss_pred eeeeCCCCCCHHHHHHHHHHHc---CCcEEEEec
Q 041382 222 YLLYGPPGTGKSSLIAAMANYM---NYDIYNLNL 252 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l---~~~~~~l~~ 252 (600)
+.|.|||||||||+++.++..+ |.+++....
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 6799999999999999999999 998886654
No 184
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.54 E-value=0.0015 Score=62.95 Aligned_cols=29 Identities=31% Similarity=0.593 Sum_probs=26.1
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEE
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYN 249 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~ 249 (600)
-+.|.|||||||||+++.+|+.+|.++++
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 57899999999999999999999977664
No 185
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.53 E-value=0.0027 Score=60.27 Aligned_cols=31 Identities=26% Similarity=0.399 Sum_probs=25.9
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCC--cEEEE
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNY--DIYNL 250 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~--~~~~l 250 (600)
.-++|.|+|||||||+++.+|..++. +++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~ 37 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKRDVYLT 37 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEe
Confidence 35789999999999999999999876 35443
No 186
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.53 E-value=0.00083 Score=62.76 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=25.2
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcC---CcEEEEe
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMN---YDIYNLN 251 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~---~~~~~l~ 251 (600)
-++|.|||||||||+++.+|..++ .++..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence 478999999999999999999886 3354444
No 187
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.52 E-value=0.0011 Score=65.95 Aligned_cols=33 Identities=27% Similarity=0.512 Sum_probs=29.4
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
+..+.|.||+|+||||+++.+|..++.++++.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 347999999999999999999999999887754
No 188
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.51 E-value=0.0012 Score=62.53 Aligned_cols=31 Identities=23% Similarity=0.271 Sum_probs=28.1
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
-+.|.||+|+||||+++.+|..+|.+++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 5789999999999999999999998888754
No 189
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.50 E-value=0.0018 Score=64.46 Aligned_cols=32 Identities=34% Similarity=0.471 Sum_probs=27.2
Q ss_pred cceeeeCCCCCCHHHHHHHHHHH---cCCcEEEEe
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANY---MNYDIYNLN 251 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~---l~~~~~~l~ 251 (600)
.-++|.|+||+||||+++.+|.. .|.+++.++
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~ 39 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG 39 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence 35889999999999999999998 677776554
No 190
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.47 E-value=0.0012 Score=63.00 Aligned_cols=30 Identities=17% Similarity=0.297 Sum_probs=25.9
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
-+.|.||+||||||+++.+|+ +|.++++.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~d 33 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDAD 33 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccchH
Confidence 477999999999999999998 888877544
No 191
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.45 E-value=0.0013 Score=62.63 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=27.6
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
-+.|.|++||||||+++.+|..+|.++++.|
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 4679999999999999999999998887755
No 192
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.43 E-value=0.0019 Score=63.46 Aligned_cols=31 Identities=29% Similarity=0.357 Sum_probs=27.3
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIYNL 250 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~~~~l 250 (600)
.-+.|.||||+||||+++.+|..++++++..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d~ 40 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLDT 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 4688999999999999999999999877653
No 193
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.43 E-value=0.038 Score=52.59 Aligned_cols=109 Identities=12% Similarity=0.188 Sum_probs=69.2
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCcc--C-Ch-----------------------------hHHHHH
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVV--T-SD-----------------------------SSLEYL 264 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~--~-~~-----------------------------~~l~~~ 264 (600)
..+++|+++|.||||.|-++|-.. |..+..+..-.- . ++ ......
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 467899999999999999998865 788877753321 0 00 011111
Q ss_pred ----HhhC--CCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcCcCC
Q 041382 265 ----LLHV--PNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKDRID 338 (600)
Q Consensus 265 ----~~~~--~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~~Ld 338 (600)
.... ....+|+|||+-...... . .....++..+.. .....-+|+|+|.+ +
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g-------------~----l~~~ev~~~l~~----Rp~~~~vIlTGr~a---p 164 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYD-------------Y----LPLEEVISALNA----RPGHQTVIITGRGC---H 164 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTT-------------S----SCHHHHHHHHHT----SCTTCEEEEECSSC---C
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCC-------------C----CCHHHHHHHHHh----CcCCCEEEEECCCC---c
Confidence 1112 345799999997654310 0 112345555543 23457789999974 8
Q ss_pred HHHHhcCCcceEEEeC
Q 041382 339 PALLRAGRMDRHINLS 354 (600)
Q Consensus 339 ~aLlrpgRfd~~I~~~ 354 (600)
++|+. .-|.+-+|.
T Consensus 165 ~~l~e--~AD~VTem~ 178 (196)
T 1g5t_A 165 RDILD--LADTVSELR 178 (196)
T ss_dssp HHHHH--HCSEEEECC
T ss_pred HHHHH--hCcceeeec
Confidence 89998 888877764
No 194
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.43 E-value=0.014 Score=56.94 Aligned_cols=62 Identities=8% Similarity=0.188 Sum_probs=39.7
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCc-------cC-------------ChhHHHHHHhhC---CCccee
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSV-------VT-------------SDSSLEYLLLHV---PNRSIL 274 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~-------~~-------------~~~~l~~~~~~~---~~~sIL 274 (600)
-++++||||+||||++..+|..+ +..++.+.... +. ....+...+... ..+.+|
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvV 93 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVI 93 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEE
Confidence 46788999999999998888765 55666663211 11 112333333332 247899
Q ss_pred eecchhhh
Q 041382 275 VVEDIDCS 282 (600)
Q Consensus 275 ~iDeiD~l 282 (600)
+|||+..+
T Consensus 94 iIDEaQ~l 101 (223)
T 2b8t_A 94 GIDEVQFF 101 (223)
T ss_dssp EECSGGGS
T ss_pred EEecCccC
Confidence 99999754
No 195
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.38 E-value=0.0038 Score=59.97 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=25.0
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHc
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l 243 (600)
|++.+.-+.|.||+|+|||||++.+|..+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56666678999999999999999999854
No 196
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.38 E-value=0.027 Score=61.55 Aligned_cols=74 Identities=8% Similarity=0.077 Sum_probs=50.1
Q ss_pred ceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCCcC--cCCHHHHhcCCcce
Q 041382 272 SILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNYKD--RIDPALLRAGRMDR 349 (600)
Q Consensus 272 sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~~~--~Ld~aLlrpgRfd~ 349 (600)
.+|+|||...++.... ..+..++..+-...... ++-+|++|.++. .++..+.. -|..
T Consensus 299 ivlvIDE~~~ll~~~~-----------------~~~~~~l~~Lar~gRa~--GI~LIlaTQrp~~dvl~~~i~~--n~~~ 357 (512)
T 2ius_A 299 IVVLVDEFADLMMTVG-----------------KKVEELIARLAQKARAA--GIHLVLATQRPSVDVITGLIKA--NIPT 357 (512)
T ss_dssp EEEEEETHHHHHHHHH-----------------HHHHHHHHHHHHHCGGG--TEEEEEEESCCCTTTSCHHHHH--HCCE
T ss_pred EEEEEeCHHHHHhhhh-----------------HHHHHHHHHHHHHhhhC--CcEEEEEecCCccccccHHHHh--hcCC
Confidence 3899999988764100 11233333332222222 377888998886 68888888 8889
Q ss_pred EEEeCCCCHHHHHHHHH
Q 041382 350 HINLSYCTFSTFKQLAA 366 (600)
Q Consensus 350 ~I~~~~p~~e~r~~il~ 366 (600)
.|.|...+..+.+.++.
T Consensus 358 RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 358 RIAFTVSSKIDSRTILD 374 (512)
T ss_dssp EEEECCSSHHHHHHHHS
T ss_pred eEEEEcCCHHHHHHhcC
Confidence 99999999999888765
No 197
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.32 E-value=0.0043 Score=64.91 Aligned_cols=60 Identities=27% Similarity=0.428 Sum_probs=38.3
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcC----CcEEEEecC-ccC---------------ChhHHHHHHhhC--CCcceeeec
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMN----YDIYNLNLS-VVT---------------SDSSLEYLLLHV--PNRSILVVE 277 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~----~~~~~l~~~-~~~---------------~~~~l~~~~~~~--~~~sIL~iD 277 (600)
.-+++.||+|+||||+++++++.+. ..++.+.-. .+. ....+...+..+ ..|-||++|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillD 203 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVG 203 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecC
Confidence 3578999999999999999999763 344443211 000 111223333333 579999999
Q ss_pred ch
Q 041382 278 DI 279 (600)
Q Consensus 278 ei 279 (600)
|+
T Consensus 204 Ep 205 (356)
T 3jvv_A 204 EM 205 (356)
T ss_dssp CC
T ss_pred CC
Confidence 98
No 198
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.31 E-value=0.00093 Score=63.71 Aligned_cols=30 Identities=17% Similarity=0.241 Sum_probs=24.9
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcCCcEE
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMNYDIY 248 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~~~~~ 248 (600)
+.-+.|.|+|||||||+++.+|..++.+.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~ 39 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNV 39 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 345889999999999999999998765433
No 199
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.30 E-value=0.0017 Score=61.27 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=27.2
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
.-+.|.|++||||||+++.+|.. |.++++.|
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 35889999999999999999998 88887655
No 200
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.23 E-value=0.0023 Score=61.39 Aligned_cols=32 Identities=22% Similarity=0.301 Sum_probs=28.3
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
..+.|.|+||||||++++.+|..+|.++++.+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d 35 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDTG 35 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecCC
Confidence 36889999999999999999999998877654
No 201
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.19 E-value=0.0028 Score=60.42 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=24.6
Q ss_pred CCCcceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 217 VWKRGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 217 ~~~rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
..++-++|.||||+||||+++.++..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4456789999999999999999999885
No 202
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.16 E-value=0.0045 Score=57.87 Aligned_cols=33 Identities=27% Similarity=0.517 Sum_probs=26.2
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcC---CcEEEEe
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMN---YDIYNLN 251 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~---~~~~~l~ 251 (600)
+.-++|.|+||+||||+++.+|..++ .+++.++
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 34678999999999999999999874 4454444
No 203
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.15 E-value=0.0025 Score=61.26 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=26.7
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
.-+.|.|++|+||||+++.+|. +|.++++.|
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D 35 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDAD 35 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEcc
Confidence 3578999999999999999998 888777654
No 204
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.14 E-value=0.0036 Score=60.79 Aligned_cols=40 Identities=25% Similarity=0.170 Sum_probs=31.4
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCc
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSV 254 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~ 254 (600)
|++.+.-++|+||||+|||+++..+|... +.+++.++...
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 56666778999999999999988887643 66777777543
No 205
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.14 E-value=0.0031 Score=58.97 Aligned_cols=26 Identities=15% Similarity=0.393 Sum_probs=22.7
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
++-+.|.||+|+||||+++.+++.+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34678999999999999999999764
No 206
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.13 E-value=0.0038 Score=61.82 Aligned_cols=30 Identities=30% Similarity=0.565 Sum_probs=26.5
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCcEEE
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIYN 249 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~~~~ 249 (600)
.-+-|.||+|+||||+++.+|..+|+.+++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 357899999999999999999999987664
No 207
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.13 E-value=0.0085 Score=73.90 Aligned_cols=119 Identities=13% Similarity=0.189 Sum_probs=68.5
Q ss_pred HHHHhCC-CCCcc--eeeeCCCCCCHHHHHHHHHHH---cCCcEEEEecCccCC----------------------hhHH
Q 041382 210 YYRKIGK-VWKRG--YLLYGPPGTGKSSLIAAMANY---MNYDIYNLNLSVVTS----------------------DSSL 261 (600)
Q Consensus 210 ~y~~~g~-~~~rg--iLL~GppGtGKTsla~alA~~---l~~~~~~l~~~~~~~----------------------~~~l 261 (600)
.-..+|. -+||| +++|||+|||||+|+-.++.+ .|.....++...-.+ +..|
T Consensus 1419 lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l 1498 (1706)
T 3cmw_A 1419 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQAL 1498 (1706)
T ss_dssp HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHH
T ss_pred HHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHH
Confidence 3344553 44555 999999999999999876643 366666666542211 1122
Q ss_pred --HHHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEecCC
Q 041382 262 --EYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFTTNY 333 (600)
Q Consensus 262 --~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~TTN~ 333 (600)
...+.+...+.+|+||-+.++.+ +....++..+...+-..+.+++.|..|.+..+..+ ..+|++..-
T Consensus 1499 ~~~~~~~~s~~~~~vvvDsv~al~~---~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~~~--~~~i~~~~~ 1567 (1706)
T 3cmw_A 1499 EICDALARSGAVDVIVVDSVAALTP---KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN--TLLIFINQI 1567 (1706)
T ss_dssp HHHHHHHHHTCCSEEEESCSTTCCC---TTTTC-------CCHHHHHHHHHHHHHHHHHHHHT--CEEEEEECB
T ss_pred HHHHHHHHcCCCCEEEEccHHhCCc---cccccccccccchhHHHHHHHHHHHHHHHHHHhCC--cEEEEeecc
Confidence 22333345789999999999965 21111111111122345566777777777665544 666666543
No 208
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.12 E-value=0.0014 Score=62.47 Aligned_cols=26 Identities=19% Similarity=0.138 Sum_probs=22.9
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCC
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNY 245 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~ 245 (600)
.-+.|.|+|||||||+++.+|..++.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45889999999999999999998743
No 209
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.11 E-value=0.0076 Score=68.02 Aligned_cols=58 Identities=31% Similarity=0.442 Sum_probs=38.1
Q ss_pred CCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecC
Q 041382 181 PMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLS 253 (600)
Q Consensus 181 p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~ 253 (600)
|..|-+-...+.++++|...+. . +.-.|++||||||||+++..+..++ +.++..+..+
T Consensus 182 ~~~~~~~~LN~~Q~~AV~~al~----~-----------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 182 PLTFFNTCLDTSQKEAVLFALS----Q-----------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp CCCCSSTTCCHHHHHHHHHHHH----C-----------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cccccCCCCCHHHHHHHHHHhc----C-----------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 3444444567888888876652 1 1146899999999998776665544 5566555544
No 210
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.09 E-value=0.0036 Score=63.98 Aligned_cols=37 Identities=16% Similarity=0.501 Sum_probs=31.4
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCcc
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVV 255 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~ 255 (600)
++-+++.||+|+|||+|+..+|..++..++..|.-.+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qv 46 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALI 46 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccc
Confidence 4568899999999999999999999988877765444
No 211
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.08 E-value=0.0024 Score=66.14 Aligned_cols=36 Identities=31% Similarity=0.406 Sum_probs=31.3
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCcc
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVV 255 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~ 255 (600)
+-++|.||+|||||+|+..||..++..+++.|.-.+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qv 76 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQV 76 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccccc
Confidence 368899999999999999999999988888775544
No 212
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.05 E-value=0.0042 Score=60.65 Aligned_cols=31 Identities=19% Similarity=0.373 Sum_probs=27.2
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIYNL 250 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~~~~l 250 (600)
..+.|.|++|+||||+++.+|..+|.++++.
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~ 47 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFGFTYLDT 47 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCceecC
Confidence 3578999999999999999999999877654
No 213
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.02 E-value=0.0033 Score=62.13 Aligned_cols=27 Identities=22% Similarity=0.226 Sum_probs=24.7
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCc
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYD 246 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~ 246 (600)
.-+.|.|||||||||+++.+|..++.+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 468899999999999999999999876
No 214
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.02 E-value=0.0022 Score=64.89 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=23.9
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHc-CCcEE
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYM-NYDIY 248 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l-~~~~~ 248 (600)
.-++|.||||+||||+++.++..+ +..++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 468999999999999999999964 54433
No 215
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.01 E-value=0.0022 Score=61.16 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=25.5
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHc-CCcEEEEe
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYM-NYDIYNLN 251 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l-~~~~~~l~ 251 (600)
.-+.|.||||+||||+++.+++.+ +..++..|
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D 54 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSVISQD 54 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCC
Confidence 356799999999999999999987 55554433
No 216
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.01 E-value=0.004 Score=58.34 Aligned_cols=25 Identities=32% Similarity=0.602 Sum_probs=21.9
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCC
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNY 245 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~ 245 (600)
-+.|.||+|+||||+++.++...+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 4789999999999999999986643
No 217
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.97 E-value=0.0047 Score=59.17 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=27.1
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcC----CcEEEEe
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMN----YDIYNLN 251 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~----~~~~~l~ 251 (600)
+.-++|.|+||+||||+++.++..++ .+++.++
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 44678999999999999999999874 4566665
No 218
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.97 E-value=0.0029 Score=60.57 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=27.5
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcCCcEEEEec
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNL 252 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~ 252 (600)
+++++|.||+|+|||+++..+|...+ .++..|.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 46899999999999999999999876 6655543
No 219
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.95 E-value=0.0035 Score=59.29 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=22.8
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHc
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l 243 (600)
.+.-+.|.||+|+||||+++.+++.+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34467899999999999999999987
No 220
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.87 E-value=0.0068 Score=58.91 Aligned_cols=39 Identities=26% Similarity=0.191 Sum_probs=30.1
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHH----cCCcEEEEecC
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANY----MNYDIYNLNLS 253 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~----l~~~~~~l~~~ 253 (600)
|++++.-++++|+||+|||+++..+|.. .+.+++.++..
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 5666777899999999999999876643 36677777654
No 221
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.85 E-value=0.0044 Score=59.37 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=23.3
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcCC
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMNY 245 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~~ 245 (600)
+.-+.|.||+|+||||+++.++..+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 345789999999999999999998753
No 222
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.84 E-value=0.014 Score=55.44 Aligned_cols=35 Identities=11% Similarity=0.197 Sum_probs=28.2
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCc
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSV 254 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~ 254 (600)
.-+.|.||+|+||||+++.++..+ +.+++.++...
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 457799999999999999999976 66777665443
No 223
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.82 E-value=0.0043 Score=64.31 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=28.7
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecC
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLS 253 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~ 253 (600)
.-+.+.||+|+|||+++..+|..++..++..|.-
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 3688999999999999999999999766666543
No 224
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=95.78 E-value=0.0078 Score=48.31 Aligned_cols=46 Identities=15% Similarity=-0.068 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHHhcCcCCCccHHHHHHHhhh-cCCCHHHHHHHHH
Q 041382 354 SYCTFSTFKQLAANYLDINDHDLYCHIEKLMEK-VKVSPAEVAGELM 399 (600)
Q Consensus 354 ~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~~-~~~t~a~i~~~l~ 399 (600)
|+|+.++|.+||+.++..........+..+... .+||+|||...+.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~ 47 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCT 47 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHH
Confidence 789999999999999987543222334444443 3699999998774
No 225
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.77 E-value=0.064 Score=50.38 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=17.5
Q ss_pred cceeeeCCCCCCHHHHH-HHHHHH
Q 041382 220 RGYLLYGPPGTGKSSLI-AAMANY 242 (600)
Q Consensus 220 rgiLL~GppGtGKTsla-~alA~~ 242 (600)
+.+++.+|+|+|||..+ ..+...
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 57999999999999863 344444
No 226
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.76 E-value=0.0039 Score=62.89 Aligned_cols=31 Identities=26% Similarity=0.263 Sum_probs=26.0
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN 251 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~~~~l~ 251 (600)
.-+.|.|+|||||||+++.++ .+|.+++..|
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~id~D 106 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYIIDSD 106 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEEEEHH
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEEehh
Confidence 357899999999999999999 5787776543
No 227
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.75 E-value=0.046 Score=48.74 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.0
Q ss_pred ceeeeCCCCCCHHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~ 242 (600)
.+++.|+||+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 228
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.69 E-value=0.0032 Score=67.31 Aligned_cols=31 Identities=29% Similarity=0.327 Sum_probs=26.0
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcCCcEEE
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMNYDIYN 249 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~~~~~~ 249 (600)
+.-++|.||||+||||+++.++..+++.++.
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 3468899999999999999999988765543
No 229
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.68 E-value=0.0054 Score=58.69 Aligned_cols=29 Identities=17% Similarity=0.188 Sum_probs=27.3
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEE
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYN 249 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~ 249 (600)
-+.|.||+|||||++++.+|..+|+++++
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 57899999999999999999999999985
No 230
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.65 E-value=0.0067 Score=57.30 Aligned_cols=25 Identities=28% Similarity=0.624 Sum_probs=22.1
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
.-+.|.||+|+||||+++.+++.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4577999999999999999999864
No 231
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.65 E-value=0.011 Score=63.40 Aligned_cols=95 Identities=15% Similarity=0.209 Sum_probs=62.9
Q ss_pred HHHHhhCCCcceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCcccc------CCCeeEEEEec----
Q 041382 262 EYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCC------CGDEKITVFTT---- 331 (600)
Q Consensus 262 ~~~~~~~~~~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~------~~~~~iiI~TT---- 331 (600)
+..+..+....|+++||||.+.. + .... ..+....-....||..||+.... ...++++|+|.
T Consensus 242 ~~ai~~ae~~~il~~DEidki~~--~--~~~~----~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~ 313 (444)
T 1g41_A 242 QKAIDAVEQNGIVFIDEIDKICK--K--GEYS----GADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQV 313 (444)
T ss_dssp HHHHHHHHHHCEEEEETGGGGSC--C--SSCS----SSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSS
T ss_pred HHHHHHhccCCeeeHHHHHHHhh--c--cCCC----CCCchHHHHHHHHHHHhcccccccccceecCCcEEEEecccccc
Confidence 34444444677999999999953 1 1100 11111122345788899874211 22458899887
Q ss_pred CCcCcCCHHHHhcCCcceEEEeCCCCHHHHHHHHH
Q 041382 332 NYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAA 366 (600)
Q Consensus 332 N~~~~Ld~aLlrpgRfd~~I~~~~p~~e~r~~il~ 366 (600)
+.+..+-|.|+. ||+..|.++.++.++...|+.
T Consensus 314 ~~~~dlipel~~--R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 314 ARPSDLIPELQG--RLPIRVELTALSAADFERILT 346 (444)
T ss_dssp CCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred CChhhcchHHhc--ccceeeeCCCCCHHHHHHHHH
Confidence 344456688998 999999999999999999985
No 232
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.64 E-value=0.026 Score=60.85 Aligned_cols=73 Identities=18% Similarity=0.140 Sum_probs=55.3
Q ss_pred cceeeecchhhhhhhhccccCCCCCCCCCCCChHHHHHHHHHhhcCccccCCCeeEEEEe---------cC---CcCcCC
Q 041382 271 RSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITVFT---------TN---YKDRID 338 (600)
Q Consensus 271 ~sIL~iDeiD~l~~~~~r~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~iiI~T---------TN---~~~~Ld 338 (600)
|.|+||||+|.+-. ...+.|+..|+... ..++|++| |+ .++.|+
T Consensus 296 ~~VliIDEa~~l~~--------------------~a~~aLlk~lEe~~----~~~~il~tn~~~~~i~~~~~~~~~~~l~ 351 (456)
T 2c9o_A 296 PGVLFVDEVHMLDI--------------------ECFTYLHRALESSI----APIVIFASNRGNCVIRGTEDITSPHGIP 351 (456)
T ss_dssp ECEEEEESGGGCBH--------------------HHHHHHHHHTTSTT----CCEEEEEECCSEEECBTTSSCEEETTCC
T ss_pred ceEEEEechhhcCH--------------------HHHHHHHHHhhccC----CCEEEEecCCccccccccccccccccCC
Confidence 57999999998832 46777888887542 23444444 32 288999
Q ss_pred HHHHhcCCcceEEEeCCCCHHHHHHHHHHhcC
Q 041382 339 PALLRAGRMDRHINLSYCTFSTFKQLAANYLD 370 (600)
Q Consensus 339 ~aLlrpgRfd~~I~~~~p~~e~r~~il~~~l~ 370 (600)
|.+++ ||.. +.|++++.++..++++....
T Consensus 352 ~~i~s--R~~~-~~~~~~~~~e~~~iL~~~~~ 380 (456)
T 2c9o_A 352 LDLLD--RVMI-IRTMLYTPQEMKQIIKIRAQ 380 (456)
T ss_dssp HHHHT--TEEE-EECCCCCHHHHHHHHHHHHH
T ss_pred hhHHh--hcce-eeCCCCCHHHHHHHHHHHHH
Confidence 99999 9965 79999999999999987654
No 233
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.63 E-value=0.028 Score=60.61 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=20.6
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHc
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l 243 (600)
.++|+||||+|||+|+..++...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 58899999999999999988764
No 234
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.61 E-value=0.01 Score=56.75 Aligned_cols=26 Identities=35% Similarity=0.569 Sum_probs=22.7
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
+.-+.|.||+|+|||||++.|++.+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34567999999999999999999885
No 235
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.61 E-value=0.006 Score=62.47 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=28.8
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCc
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSV 254 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~l~~~~ 254 (600)
-+++.||+|+|||+|+..+|..++..++..|.-.
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~Q 38 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQ 38 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGG
T ss_pred EEEEECCCcCCHHHHHHHHHHhCccceeecCccc
Confidence 5789999999999999999999987777666443
No 236
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.56 E-value=0.019 Score=58.27 Aligned_cols=36 Identities=22% Similarity=0.401 Sum_probs=28.5
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHc----CCcEEEEecCc
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYM----NYDIYNLNLSV 254 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l----~~~~~~l~~~~ 254 (600)
++.++|.||+|+||||++..+|..+ |..+..+++..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 4568899999999999999999865 45666666543
No 237
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.54 E-value=0.0085 Score=56.72 Aligned_cols=28 Identities=32% Similarity=0.517 Sum_probs=23.4
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCcE
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYDI 247 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~~ 247 (600)
|-++|.||+|+|||||++.+.......+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 4589999999999999999988764433
No 238
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.48 E-value=0.011 Score=57.88 Aligned_cols=32 Identities=19% Similarity=0.158 Sum_probs=27.1
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEEEec
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNLNL 252 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~l~~ 252 (600)
.++++||+|+|||.++.+++..++..++.+..
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P 141 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVP 141 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEES
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 48999999999999999999988777666543
No 239
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.45 E-value=0.0077 Score=56.47 Aligned_cols=25 Identities=36% Similarity=0.596 Sum_probs=22.2
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
+-+.|.||+|+||||+++.+++.+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999999864
No 240
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=95.42 E-value=0.073 Score=50.77 Aligned_cols=51 Identities=18% Similarity=0.175 Sum_probs=31.1
Q ss_pred CCccccccChhHHHHHHHHHHHHHhCHHHHHHhCC---CCCcceeeeCCCCCCHHHH
Q 041382 182 MTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGK---VWKRGYLLYGPPGTGKSSL 235 (600)
Q Consensus 182 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~---~~~rgiLL~GppGtGKTsl 235 (600)
.+|+++...+.+.+.+.+. -...+..|+...+ -..+.+++.+|+|+|||..
T Consensus 14 ~~f~~l~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 14 YKFDDMELDENLLRGVFGY---GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGT 67 (224)
T ss_dssp CCGGGGTCCHHHHHHHHHH---TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred CChhhcCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHH
Confidence 5799988777776666432 1112222222111 1235799999999999987
No 241
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.42 E-value=0.0077 Score=57.27 Aligned_cols=26 Identities=35% Similarity=0.574 Sum_probs=22.5
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
++-+.|.||+|+|||||++.+++.+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45688999999999999999999763
No 242
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.40 E-value=0.012 Score=62.92 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=28.6
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecC
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLS 253 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~ 253 (600)
++-+++.||+|+||||++..+|..+ |..+..+++.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 5578899999999999999999877 6666666544
No 243
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.33 E-value=0.014 Score=62.58 Aligned_cols=63 Identities=22% Similarity=0.289 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCcc
Q 041382 192 DLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVV 255 (600)
Q Consensus 192 ~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~ 255 (600)
.+++.+.+.+...+..+...... ...|.-+++.||||+||||++..+|.++ |..+..+++...
T Consensus 74 ~v~~~l~~eL~~~L~~~~~~~~~-~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~ 139 (443)
T 3dm5_A 74 HIIKIVYEELTKFLGTEAKPIEI-KEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW 139 (443)
T ss_dssp HHHHHHHHHHHHHTTSSCCCCCC-CSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred HHHHHHHHHHHHHhcCccccccc-CCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 45555666665555431110001 1135678999999999999999999877 667776765543
No 244
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.31 E-value=0.012 Score=65.90 Aligned_cols=33 Identities=27% Similarity=0.496 Sum_probs=29.8
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEe
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLN 251 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~ 251 (600)
+.-++|.|+||+||||+++++|..+ |.+++.++
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 3458899999999999999999999 99999886
No 245
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.31 E-value=0.0064 Score=57.93 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=22.7
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
.-+.|.||+|+||||+++.+++.++
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3577999999999999999999987
No 246
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.31 E-value=0.0088 Score=58.54 Aligned_cols=29 Identities=21% Similarity=0.389 Sum_probs=25.4
Q ss_pred eeeeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 041382 222 YLLYGPPGTGKSSLIAAMANYMNYDIYNL 250 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l~~~~~~l 250 (600)
+=|.||||+||||+++.+|..++.+.+..
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 55889999999999999999999877643
No 247
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.27 E-value=0.01 Score=60.61 Aligned_cols=34 Identities=29% Similarity=0.479 Sum_probs=28.1
Q ss_pred hCCCCCcceeeeCCCCCCHHHHHHHHHHHcCCcE
Q 041382 214 IGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDI 247 (600)
Q Consensus 214 ~g~~~~rgiLL~GppGtGKTsla~alA~~l~~~~ 247 (600)
+.++++.-+.|.||+|+|||||++.|++.+...+
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 3566667789999999999999999999884444
No 248
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.24 E-value=0.012 Score=53.97 Aligned_cols=27 Identities=26% Similarity=0.236 Sum_probs=23.4
Q ss_pred CCCcceeeeCCCCCCHHHHHHHHHHHc
Q 041382 217 VWKRGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 217 ~~~rgiLL~GppGtGKTsla~alA~~l 243 (600)
+.+.-+.|.||.|+|||||++++++.+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 444457899999999999999999987
No 249
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.22 E-value=0.025 Score=50.95 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=20.3
Q ss_pred ceeeeCCCCCCHHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~ 242 (600)
-+++.|++|+|||+|++++.+.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 250
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.22 E-value=0.0089 Score=63.25 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=28.8
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCcEEEEecC
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLS 253 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~~~~l~~~ 253 (600)
.-+++.||+|+|||+|+..+|..++..++..|.-
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~ 36 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSM 36 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCcc
Confidence 4578999999999999999999998777666543
No 251
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.19 E-value=0.0091 Score=60.25 Aligned_cols=40 Identities=18% Similarity=0.130 Sum_probs=31.2
Q ss_pred hCCCCCcceeeeCCCCCCHHHHHHHHHHHc----CCcEEEEecC
Q 041382 214 IGKVWKRGYLLYGPPGTGKSSLIAAMANYM----NYDIYNLNLS 253 (600)
Q Consensus 214 ~g~~~~rgiLL~GppGtGKTsla~alA~~l----~~~~~~l~~~ 253 (600)
.|++.+.-++|.||||+|||+|++.+|..+ |.+++.++..
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE 73 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 356666678999999999999999999875 4466666543
No 252
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=95.17 E-value=0.014 Score=48.05 Aligned_cols=48 Identities=17% Similarity=-0.051 Sum_probs=33.9
Q ss_pred EeCCCCHHHHHHHHHHhcCcCCCccHHHHHHHhhh-cCCCHHHHHHHHH
Q 041382 352 NLSYCTFSTFKQLAANYLDINDHDLYCHIEKLMEK-VKVSPAEVAGELM 399 (600)
Q Consensus 352 ~~~~p~~e~r~~il~~~l~~~~~~~~~~i~~l~~~-~~~t~a~i~~~l~ 399 (600)
+-++|+.++|.+|++.++..........+..+.+. .+||+|||.+.+.
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~ 55 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCT 55 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 45799999999999999986542222223334433 3799999999874
No 253
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.16 E-value=0.045 Score=50.30 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=20.3
Q ss_pred cceeeeCCCCCCHHHHHHHHHH
Q 041382 220 RGYLLYGPPGTGKSSLIAAMAN 241 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~ 241 (600)
..+++.|++|+|||+|+.++.+
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999987
No 254
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.16 E-value=0.014 Score=59.64 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHhCHHHHHHhC--CCCCcceeeeCCCCCCHHHHHHHHHHHc
Q 041382 192 DLKETVLNDLDCFRRGKEYYRKIG--KVWKRGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 192 ~~k~~i~~~l~~~l~~~~~y~~~g--~~~~rgiLL~GppGtGKTsla~alA~~l 243 (600)
.+++.+.+.+...+........+. ...+.-+.|.||.|+||||+++.+|+.+
T Consensus 71 ~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 71 EIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp HHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 455556666655554221001122 2344567899999999999999999986
No 255
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.15 E-value=0.02 Score=61.31 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=28.8
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecC
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLS 253 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~ 253 (600)
++.+++.||||+||||++..+|..+ |..+..+++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 3578999999999999999999976 4667766654
No 256
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.14 E-value=0.049 Score=48.43 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.1
Q ss_pred ceeeeCCCCCCHHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~ 242 (600)
.+++.|++|+|||||+.++++.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 257
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.13 E-value=0.012 Score=56.94 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=22.9
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHc
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l 243 (600)
.+.-+.|.||+|+|||||++.|++.+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34467899999999999999999987
No 258
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.13 E-value=0.054 Score=50.46 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=21.2
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHH
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~ 242 (600)
.--+++.|++|+|||+|+.++.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999874
No 259
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.13 E-value=0.018 Score=58.85 Aligned_cols=60 Identities=12% Similarity=0.018 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecC
Q 041382 193 LKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLS 253 (600)
Q Consensus 193 ~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~ 253 (600)
+++.+.+.+...+.....+ ......+.-+++.||+|+||||++..+|..+ +..+..+++.
T Consensus 79 ~~~~~~~~l~~~l~~~~~~-~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D 141 (306)
T 1vma_A 79 ALESLKEIILEILNFDTKL-NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAAD 141 (306)
T ss_dssp HHHHHHHHHHHHTCSCCCC-CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCCCC-cccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccc
Confidence 4555555555555322100 1112334568899999999999999999976 5566666543
No 260
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.13 E-value=0.16 Score=45.18 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=19.2
Q ss_pred eeeeCCCCCCHHHHHHHHHHH
Q 041382 222 YLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~ 242 (600)
+++.|++|+|||+|+.++.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999863
No 261
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.09 E-value=0.014 Score=55.79 Aligned_cols=26 Identities=23% Similarity=0.451 Sum_probs=22.8
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
++-+.|.||+|+|||||++++++...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34678999999999999999999865
No 262
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.06 E-value=0.014 Score=60.20 Aligned_cols=62 Identities=11% Similarity=0.254 Sum_probs=40.3
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcCC--cEEEEecCcc------------C--ChhHHHHHHhhC--CCcceeeecchh
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMNY--DIYNLNLSVV------------T--SDSSLEYLLLHV--PNRSILVVEDID 280 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~~--~~~~l~~~~~------------~--~~~~l~~~~~~~--~~~sIL~iDeiD 280 (600)
+..+++.||+|+||||+++++++.+.. ..+.++.... . +....+..+..+ .+|.+|++||.-
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 347899999999999999999998742 3444432110 0 122233333332 579999999974
No 263
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.06 E-value=0.061 Score=47.97 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.5
Q ss_pred cceeeeCCCCCCHHHHHHHHHHH
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~ 242 (600)
..+++.|++|+|||+|+.++.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999873
No 264
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.05 E-value=0.013 Score=55.95 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=23.2
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
.+.-+.|.||+|+||||++++|++.+.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 334577999999999999999999874
No 265
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.03 E-value=0.049 Score=49.96 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.2
Q ss_pred ceeeeCCCCCCHHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~ 242 (600)
-+++.|++|+|||+|+.++.+.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 266
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.01 E-value=0.02 Score=58.68 Aligned_cols=39 Identities=21% Similarity=0.216 Sum_probs=31.1
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecC
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLS 253 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~ 253 (600)
|++++.-++|.|+||+|||+++..+|... +.++..+++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 67777779999999999999999998754 4566666654
No 267
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.01 E-value=0.03 Score=50.22 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=20.0
Q ss_pred ceeeeCCCCCCHHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~ 242 (600)
.+++.|++|+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 268
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.00 E-value=0.015 Score=57.88 Aligned_cols=27 Identities=41% Similarity=0.605 Sum_probs=23.1
Q ss_pred CCCcceeeeCCCCCCHHHHHHHHHHHc
Q 041382 217 VWKRGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 217 ~~~rgiLL~GppGtGKTsla~alA~~l 243 (600)
+++.-++|.||+|+||||+++++++.+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 344467899999999999999999976
No 269
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.93 E-value=0.034 Score=59.35 Aligned_cols=56 Identities=23% Similarity=0.291 Sum_probs=36.7
Q ss_pred CCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCCCCcceeeeCCCCCCHHHHHHHHHHHcC---CcEEEE
Q 041382 181 PMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMN---YDIYNL 250 (600)
Q Consensus 181 p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rgiLL~GppGtGKTsla~alA~~l~---~~~~~l 250 (600)
+.+++++....+.+..+.. + +. .+..-+++.||+|+||||+++++++.+. ..++.+
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~-l---~~----------~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ 201 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRR-L---IK----------RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTV 201 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHH-H---HT----------SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEE
T ss_pred CCCHHHcCCCHHHHHHHHH-H---HH----------hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEe
Confidence 4567888766654433322 2 11 1223478999999999999999999874 345544
No 270
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.93 E-value=0.013 Score=55.19 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=28.8
Q ss_pred eeeeCCCCCCHHHHHHHHHHHcCCcEEEEecCcc
Q 041382 222 YLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVV 255 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l~~~~~~l~~~~~ 255 (600)
+|++|++|+|||++|..+|.. +.+.+++.....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCC
Confidence 689999999999999999988 888888876543
No 271
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.90 E-value=0.015 Score=56.39 Aligned_cols=28 Identities=36% Similarity=0.488 Sum_probs=23.6
Q ss_pred CCCcceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 217 VWKRGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 217 ~~~rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
+.+.-+.|.||+|+|||||++++++.+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4445678999999999999999999875
No 272
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.89 E-value=0.052 Score=49.07 Aligned_cols=21 Identities=43% Similarity=0.711 Sum_probs=19.4
Q ss_pred ceeeeCCCCCCHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMAN 241 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~ 241 (600)
-+++.|+||+|||+|+.++.+
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 589999999999999999976
No 273
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=94.89 E-value=0.1 Score=48.96 Aligned_cols=18 Identities=39% Similarity=0.418 Sum_probs=15.3
Q ss_pred cceeeeCCCCCCHHHHHH
Q 041382 220 RGYLLYGPPGTGKSSLIA 237 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~ 237 (600)
+.+++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 589999999999996544
No 274
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.87 E-value=0.077 Score=48.39 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.6
Q ss_pred cceeeeCCCCCCHHHHHHHHHHH
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~ 242 (600)
.-+++.|++|+|||+|+.++++.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 36899999999999999999873
No 275
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.87 E-value=0.037 Score=52.61 Aligned_cols=32 Identities=22% Similarity=0.420 Sum_probs=26.0
Q ss_pred cceeeeCCCCCCHH-HHHHHHHHHc--CCcEEEEe
Q 041382 220 RGYLLYGPPGTGKS-SLIAAMANYM--NYDIYNLN 251 (600)
Q Consensus 220 rgiLL~GppGtGKT-sla~alA~~l--~~~~~~l~ 251 (600)
+-+++|||.|+||| .|++++.++. +..++.+.
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~k 55 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 55 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEc
Confidence 35789999999999 8999988865 66777765
No 276
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.82 E-value=0.041 Score=49.35 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=19.7
Q ss_pred ceeeeCCCCCCHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMAN 241 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~ 241 (600)
.+++.|++|+|||+|+.++.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999987
No 277
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.80 E-value=0.013 Score=57.02 Aligned_cols=29 Identities=14% Similarity=0.167 Sum_probs=27.0
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEE
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYN 249 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~ 249 (600)
-+.+.|++|||||++++.+|..+|+++|+
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 57899999999999999999999999875
No 278
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.79 E-value=0.059 Score=48.19 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.0
Q ss_pred ceeeeCCCCCCHHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~ 242 (600)
.+++.|++|+|||+|+.++.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999873
No 279
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.78 E-value=0.089 Score=49.03 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.5
Q ss_pred cceeeeCCCCCCHHHHHHHHHHH
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~ 242 (600)
.-+++.|++|+|||+|+.++.+.
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999863
No 280
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.78 E-value=0.018 Score=60.18 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHhCHHHHHHhC--CCCCcceeeeCCCCCCHHHHHHHHHHHc
Q 041382 192 DLKETVLNDLDCFRRGKEYYRKIG--KVWKRGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 192 ~~k~~i~~~l~~~l~~~~~y~~~g--~~~~rgiLL~GppGtGKTsla~alA~~l 243 (600)
.+++.+.+.+...+........+. ...+.-+.|.||.|+||||+++.+|+.+
T Consensus 128 ~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 128 EIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp HHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 445555555555554221001122 2344567899999999999999999986
No 281
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.78 E-value=0.0056 Score=58.28 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=22.2
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCC
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNY 245 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~ 245 (600)
-+.|.||+|+||||+++.++..++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3678999999999999999998853
No 282
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.76 E-value=0.048 Score=49.68 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.5
Q ss_pred cceeeeCCCCCCHHHHHHHHHHH
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~ 242 (600)
.-+++.|++|+|||+|+.++.+.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36899999999999999999873
No 283
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.72 E-value=0.026 Score=58.01 Aligned_cols=38 Identities=32% Similarity=0.475 Sum_probs=30.0
Q ss_pred CCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCc
Q 041382 217 VWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSV 254 (600)
Q Consensus 217 ~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~ 254 (600)
..++-+++.||+|+||||++..+|..+ +..+..+++..
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 345568899999999999999999876 56677666543
No 284
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.71 E-value=0.017 Score=53.89 Aligned_cols=29 Identities=31% Similarity=0.425 Sum_probs=24.1
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcCCcEE
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMNYDIY 248 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~~~~~ 248 (600)
.+|+||.|++|+|||+++.++... |..++
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~lv 44 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQLV 44 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeEe
Confidence 469999999999999999999884 44443
No 285
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.71 E-value=0.018 Score=56.14 Aligned_cols=30 Identities=27% Similarity=0.479 Sum_probs=25.0
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcC--CcEEEE
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMN--YDIYNL 250 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~--~~~~~l 250 (600)
-+.|.||||+||||+++.+++.++ .+++..
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 467889999999999999999986 455543
No 286
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.69 E-value=0.015 Score=53.77 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=17.8
Q ss_pred CCcceeeeCCCCCCHHHHHHH
Q 041382 218 WKRGYLLYGPPGTGKSSLIAA 238 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~a 238 (600)
.+.-+.|.||+|+||||++++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 344578999999999999995
No 287
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.69 E-value=0.03 Score=53.13 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=21.6
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHc
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l 243 (600)
..++|.|++|+|||+|+.++++..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999999854
No 288
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.64 E-value=0.018 Score=62.45 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=22.2
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHc
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l 243 (600)
+.-+.|.||+|+||||+++.||+.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHh
Confidence 4457899999999999999999976
No 289
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.64 E-value=0.081 Score=48.77 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=20.3
Q ss_pred ceeeeCCCCCCHHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~ 242 (600)
-+++.|++|+|||+|+.++.+.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999874
No 290
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.64 E-value=0.042 Score=50.97 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.3
Q ss_pred ceeeeCCCCCCHHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~ 242 (600)
-+++.|++|+|||+|+.++.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999873
No 291
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.63 E-value=0.02 Score=60.10 Aligned_cols=28 Identities=39% Similarity=0.591 Sum_probs=23.9
Q ss_pred CCCCcceeeeCCCCCCHHHHHHHHHHHc
Q 041382 216 KVWKRGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 216 ~~~~rgiLL~GppGtGKTsla~alA~~l 243 (600)
..++..+++.||+|+||||+++++++.+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4445568899999999999999999976
No 292
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.63 E-value=0.037 Score=49.65 Aligned_cols=21 Identities=43% Similarity=0.703 Sum_probs=18.9
Q ss_pred ceeeeCCCCCCHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMAN 241 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~ 241 (600)
-+++.|+||+|||+|++++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999999864
No 293
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.61 E-value=0.022 Score=57.64 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=22.9
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
+.-+.+.||+|+||||+++.++..++
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34577999999999999999999885
No 294
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.59 E-value=0.068 Score=49.29 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.3
Q ss_pred ceeeeCCCCCCHHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~ 242 (600)
-+++.|++|+|||||+.++++.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 295
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.58 E-value=0.18 Score=51.40 Aligned_cols=58 Identities=14% Similarity=0.053 Sum_probs=33.2
Q ss_pred CCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCC----CCcceeeeCCCCCCHHHHHHHHHHH
Q 041382 182 MTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKV----WKRGYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 182 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~----~~rgiLL~GppGtGKTsla~alA~~ 242 (600)
.+|+++...+.+.+.+.+. -...+..++...++ .++.+++.+|+|+|||..+-..+-.
T Consensus 6 ~~f~~~~l~~~~~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNK---GFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHH---TCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHH
T ss_pred CchhhcCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHH
Confidence 4677777666666655431 11112222221111 1258999999999999886554443
No 296
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.57 E-value=0.063 Score=49.59 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.8
Q ss_pred cceeeeCCCCCCHHHHHHHHHHH
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~ 242 (600)
--+++.|++|+|||+|+.++.+.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999885
No 297
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.57 E-value=0.031 Score=60.16 Aligned_cols=39 Identities=18% Similarity=0.269 Sum_probs=31.3
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHc----CCcEEEEecC
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYM----NYDIYNLNLS 253 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l----~~~~~~l~~~ 253 (600)
|++++.-++|.|+||+|||+++..+|..+ |.++..+++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 56666678999999999999999998854 5577777653
No 298
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=94.56 E-value=0.12 Score=50.27 Aligned_cols=53 Identities=9% Similarity=0.060 Sum_probs=29.7
Q ss_pred CCccccccChhHHHHHHHHHHHHHhCHHHHHHhCC---CCCcceeeeCCCCCCHHHHHH
Q 041382 182 MTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGK---VWKRGYLLYGPPGTGKSSLIA 237 (600)
Q Consensus 182 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~---~~~rgiLL~GppGtGKTsla~ 237 (600)
.+|+++...+.+.+.+.+. -...+..++...+ ..++.+++.+|+|+|||...-
T Consensus 29 ~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 29 LNFYEANFPANVMDVIARQ---NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp SSTTTTTCCHHHHHHHHTT---TCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHH
Confidence 5688877766665555431 0111111222110 113579999999999998643
No 299
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.49 E-value=0.02 Score=56.08 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=22.9
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCc
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYD 246 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~ 246 (600)
-+-|.||+|+||||+++.+++.+|..
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchh
Confidence 46799999999999999999988754
No 300
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.41 E-value=0.022 Score=62.64 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=26.0
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcC---CcEEEEe
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMN---YDIYNLN 251 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~---~~~~~l~ 251 (600)
.-++|.|+||+||||+++.+|.+++ .+...++
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s 70 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFN 70 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEec
Confidence 4688999999999999999999884 4444444
No 301
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.41 E-value=0.02 Score=54.16 Aligned_cols=23 Identities=39% Similarity=0.762 Sum_probs=21.2
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHc
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l 243 (600)
-+.|.||+|+||||+++.+|+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999976
No 302
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.37 E-value=0.024 Score=52.93 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=22.1
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHc
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l 243 (600)
..-+.+.||+|+||||+++.++..+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 3468899999999999999999875
No 303
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.36 E-value=0.064 Score=49.46 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.6
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHc
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l 243 (600)
-+++.|+||+|||+|++.+.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 58999999999999999998754
No 304
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.35 E-value=0.04 Score=51.07 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.5
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHc
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l 243 (600)
-+++.|++|+|||+|+.++.+.-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999997643
No 305
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.32 E-value=0.047 Score=56.30 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=26.8
Q ss_pred CCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEe
Q 041382 217 VWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLN 251 (600)
Q Consensus 217 ~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~ 251 (600)
+.+.-+.|.||+|+||||+++.+|..+ +..+....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g 164 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAA 164 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEe
Confidence 345567899999999999999999976 34444443
No 306
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.31 E-value=0.033 Score=59.85 Aligned_cols=39 Identities=13% Similarity=0.081 Sum_probs=31.2
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHc----CCcEEEEecC
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYM----NYDIYNLNLS 253 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l----~~~~~~l~~~ 253 (600)
|++++.-++|.|+||+|||+++..+|... +.++..+++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 56666678999999999999999888754 5577777664
No 307
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.28 E-value=0.23 Score=52.20 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=22.1
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHc
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l 243 (600)
+.-+++.||||+|||+|++.||+..
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHH
Confidence 4468999999999999999999865
No 308
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.27 E-value=0.015 Score=58.83 Aligned_cols=36 Identities=11% Similarity=0.172 Sum_probs=26.4
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcC---CcEEEEecCccC
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMN---YDIYNLNLSVVT 256 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~---~~~~~l~~~~~~ 256 (600)
-+.|.||+|+||||+++.++..++ ..+..+++.++.
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 477999999999999999999876 456667766665
No 309
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.26 E-value=0.066 Score=48.47 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.7
Q ss_pred cceeeeCCCCCCHHHHHHHHHHH
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~ 242 (600)
.-+++.|++|+|||+|+.++.+.
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999874
No 310
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.23 E-value=0.056 Score=50.02 Aligned_cols=22 Identities=41% Similarity=0.600 Sum_probs=20.3
Q ss_pred ceeeeCCCCCCHHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~ 242 (600)
-+++.|++|+|||+|+.++.+.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999873
No 311
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.17 E-value=0.014 Score=56.55 Aligned_cols=26 Identities=23% Similarity=0.347 Sum_probs=15.7
Q ss_pred CcceeeeCCCCCCHHHHHHHHH-HHcC
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMA-NYMN 244 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA-~~l~ 244 (600)
+.-+.|.||+|+||||+++.++ +.+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC----
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 3457799999999999999999 8753
No 312
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.12 E-value=0.052 Score=48.75 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=19.6
Q ss_pred ceeeeCCCCCCHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMAN 241 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~ 241 (600)
-+++.|++|+|||+|+.++.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999986
No 313
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.12 E-value=0.028 Score=62.46 Aligned_cols=33 Identities=21% Similarity=0.162 Sum_probs=28.5
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcC----CcEEEEec
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMN----YDIYNLNL 252 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~----~~~~~l~~ 252 (600)
.-++|.|+||+||||++++++..++ .+++.++.
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~ 433 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLG 433 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECc
Confidence 3578999999999999999999986 77888873
No 314
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.07 E-value=0.049 Score=50.44 Aligned_cols=26 Identities=23% Similarity=0.553 Sum_probs=22.3
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHc
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l 243 (600)
...-+++.|++|+|||||+.++++..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34478999999999999999998753
No 315
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=94.04 E-value=0.3 Score=46.39 Aligned_cols=52 Identities=12% Similarity=-0.031 Sum_probs=28.8
Q ss_pred CCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCC---CCcceeeeCCCCCCHHHHH
Q 041382 182 MTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKV---WKRGYLLYGPPGTGKSSLI 236 (600)
Q Consensus 182 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~---~~rgiLL~GppGtGKTsla 236 (600)
.+|+++...+.+.+.+.+. -...+..++...++ ..+.+++.+|+|+|||...
T Consensus 4 ~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTL---RFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAY 58 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHT---TCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHH
T ss_pred CCHhhCCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHH
Confidence 4577776666666555331 01111112221111 1257999999999999864
No 316
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.02 E-value=0.13 Score=59.32 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=19.0
Q ss_pred cceeeeCCCCCCHHHHHHHHHHH
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~ 242 (600)
..+++.||+|+|||+++..++..
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999987777554
No 317
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.01 E-value=0.05 Score=50.58 Aligned_cols=32 Identities=13% Similarity=0.233 Sum_probs=25.9
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEec
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNL 252 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l---~~~~~~l~~ 252 (600)
.+.+.|++|+||||++..++..+ |+.+..+..
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~ 40 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKH 40 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEe
Confidence 67899999999999999999876 455555543
No 318
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.99 E-value=0.11 Score=49.23 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=19.6
Q ss_pred ceeeeCCCCCCHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMAN 241 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~ 241 (600)
-++|.|++|+|||+|+.++.+
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 589999999999999999986
No 319
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=93.93 E-value=0.14 Score=59.07 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.2
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHH
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~ 242 (600)
++.+.|.||.|+||||+.+.+|..
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 456889999999999999999874
No 320
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.91 E-value=0.077 Score=49.68 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.7
Q ss_pred cceeeeCCCCCCHHHHHHHHHHH
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~ 242 (600)
.-++|.|++|+|||+|+.++.+.
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 36899999999999999999874
No 321
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.89 E-value=0.15 Score=47.20 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=19.7
Q ss_pred ceeeeCCCCCCHHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~ 242 (600)
-++|.|++|+|||+|+..+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999888774
No 322
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.88 E-value=0.034 Score=56.67 Aligned_cols=25 Identities=36% Similarity=0.575 Sum_probs=22.4
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHc
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l 243 (600)
+.-+.|.||+|+||||+++.+|..+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4467899999999999999999987
No 323
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.84 E-value=0.043 Score=59.92 Aligned_cols=35 Identities=17% Similarity=0.357 Sum_probs=28.7
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecC
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLS 253 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~ 253 (600)
++.+++.|+||+||||++..+|..+ |..+..+++.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D 138 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICAD 138 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 4578899999999999999999876 6777777663
No 324
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=93.83 E-value=0.11 Score=60.74 Aligned_cols=24 Identities=38% Similarity=0.419 Sum_probs=20.8
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHH
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMAN 241 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~ 241 (600)
.+..+.|.||.|+||||+.+.+|.
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHH
Confidence 345688999999999999999875
No 325
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.83 E-value=0.045 Score=56.64 Aligned_cols=39 Identities=21% Similarity=0.203 Sum_probs=31.1
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecC
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLS 253 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~ 253 (600)
|+.++.-++|.|+||+|||+++..+|..+ +.++..+++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 56666678999999999999999998864 6677666653
No 326
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=93.82 E-value=0.1 Score=61.02 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=20.0
Q ss_pred CcceeeeCCCCCCHHHHHHHHHH
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMAN 241 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~ 241 (600)
+.-++|.||.|+||||+.+.+|.
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999999954
No 327
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.77 E-value=0.021 Score=62.63 Aligned_cols=26 Identities=19% Similarity=0.419 Sum_probs=23.2
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
+.++++.||+|+||||+++++++.+.
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45799999999999999999999874
No 328
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.73 E-value=0.037 Score=56.66 Aligned_cols=26 Identities=15% Similarity=0.100 Sum_probs=22.3
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
+.-+-|.||+|+|||||++.|++.+.
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHhhcc
Confidence 33467999999999999999999874
No 329
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=93.72 E-value=0.27 Score=51.00 Aligned_cols=56 Identities=16% Similarity=0.117 Sum_probs=31.3
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHhCHHHHHHhCCC---CCcceeeeCCCCCCHHHHHHH
Q 041382 180 HPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKV---WKRGYLLYGPPGTGKSSLIAA 238 (600)
Q Consensus 180 ~p~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~---~~rgiLL~GppGtGKTsla~a 238 (600)
...+|+++...+.+.+.+.+. -...+..|+...++ ..+.+++.+|+|+|||..+-.
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~ 77 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEA---GFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVI 77 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHT---TCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHH
Confidence 345788887777766666431 01111222221111 135799999999999986543
No 330
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=93.72 E-value=0.034 Score=53.60 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=27.9
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEEEec
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNLNL 252 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~l~~ 252 (600)
.+=|.|..||||||+++.++. +|+++++.|.
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD~ 41 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTDL 41 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence 577999999999999999998 9999988774
No 331
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.70 E-value=0.034 Score=51.42 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=21.6
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~ 244 (600)
-.+|+||.|+|||++++||+..++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 457999999999999999999875
No 332
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.64 E-value=0.052 Score=58.13 Aligned_cols=39 Identities=15% Similarity=0.304 Sum_probs=31.9
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHc----CCcEEEEecCccC
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYM----NYDIYNLNLSVVT 256 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l----~~~~~~l~~~~~~ 256 (600)
.++.+++.|++|+||||++..+|..+ |..+..+++....
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r 141 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR 141 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 35678899999999999999999876 6778888776543
No 333
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.63 E-value=0.063 Score=55.14 Aligned_cols=35 Identities=11% Similarity=0.100 Sum_probs=26.7
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCC-----cEEEEecCcc
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNY-----DIYNLNLSVV 255 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~-----~~~~l~~~~~ 255 (600)
-+-|.||+|+||||+++.++..++. .+..+....+
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 4678999999999999999998752 3444554443
No 334
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.60 E-value=0.037 Score=53.92 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=22.7
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
.-+.+.|++|+||||+++.+|..++
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3578999999999999999999994
No 335
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.51 E-value=0.1 Score=48.69 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.4
Q ss_pred cceeeeCCCCCCHHHHHHHHHHH
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~ 242 (600)
.-+++.|++|+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999863
No 336
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.50 E-value=0.056 Score=55.01 Aligned_cols=35 Identities=11% Similarity=0.102 Sum_probs=26.7
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcC-----CcEEEEecCcc
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMN-----YDIYNLNLSVV 255 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~-----~~~~~l~~~~~ 255 (600)
-+-|.||+|+||||+++.+++.++ ..+..+++...
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 467999999999999999999876 23555554443
No 337
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=93.49 E-value=0.036 Score=62.27 Aligned_cols=33 Identities=33% Similarity=0.403 Sum_probs=24.5
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHc----CCcEEEEecC
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYM----NYDIYNLNLS 253 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l----~~~~~~l~~~ 253 (600)
..++.||||||||+++..++..+ +..+..+..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~t 233 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS 233 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESS
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 57899999999999988887764 3445544443
No 338
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.47 E-value=0.05 Score=58.46 Aligned_cols=39 Identities=21% Similarity=0.216 Sum_probs=31.5
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecC
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLS 253 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~ 253 (600)
|++++.-+++.|+||+|||+++-.+|... |.++..+++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 56666678999999999999999888765 6677777654
No 339
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.47 E-value=0.018 Score=57.08 Aligned_cols=25 Identities=16% Similarity=0.317 Sum_probs=22.4
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
.-+.|.|++|+||||+++.+|..++
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3578899999999999999999983
No 340
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.45 E-value=0.082 Score=48.73 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.4
Q ss_pred cceeeeCCCCCCHHHHHHHHHHH
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~ 242 (600)
.-+++.|++|+|||+|+.++++.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 341
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.40 E-value=0.046 Score=53.27 Aligned_cols=31 Identities=13% Similarity=0.170 Sum_probs=22.2
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHc-------CCcEEEEe
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYM-------NYDIYNLN 251 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l-------~~~~~~l~ 251 (600)
-+.|.||+|+||||+++.++..+ |.+++...
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 46788999999999999999987 55665443
No 342
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.39 E-value=0.094 Score=55.95 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=29.3
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecC
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLS 253 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~ 253 (600)
.+..+++.||+|+||||++..+|..+ +..+..+++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc
Confidence 34567888999999999999999987 5667777764
No 343
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.37 E-value=0.042 Score=48.91 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.0
Q ss_pred ceeeeCCCCCCHHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~ 242 (600)
-+++.|++|+|||+|+.++++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999874
No 344
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.31 E-value=0.041 Score=51.61 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=20.3
Q ss_pred ceeeeCCCCCCHHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~ 242 (600)
-+.|.||+|+|||||++.+++.
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999999999985
No 345
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=93.28 E-value=0.44 Score=48.95 Aligned_cols=54 Identities=15% Similarity=0.153 Sum_probs=31.8
Q ss_pred CCccccccChhHHHHHHHHHHHHHhCHHHHHH-----hCCCCCcceeeeCCCCCCHHHHHHH
Q 041382 182 MTFGTLVMDGDLKETVLNDLDCFRRGKEYYRK-----IGKVWKRGYLLYGPPGTGKSSLIAA 238 (600)
Q Consensus 182 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~-----~g~~~~rgiLL~GppGtGKTsla~a 238 (600)
.+|+++...+.+.+.+... -...+..++. +-...++.+++.+|+|+|||..+-.
T Consensus 5 ~~f~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~ 63 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYAM---KFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSL 63 (395)
T ss_dssp CSSTTSCCCHHHHHHHHHT---TCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHH
Confidence 4677877777776666541 0111111221 1111236899999999999986543
No 346
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.24 E-value=0.043 Score=49.20 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=20.6
Q ss_pred cceeeeCCCCCCHHHHHHHHHHH
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~ 242 (600)
--+++.|++|+|||||+.++.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 36899999999999999999874
No 347
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=93.22 E-value=0.065 Score=61.90 Aligned_cols=23 Identities=39% Similarity=0.605 Sum_probs=20.0
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHc
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l 243 (600)
-.++.||||||||+++..++..+
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999988887765
No 348
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.22 E-value=0.043 Score=52.90 Aligned_cols=31 Identities=26% Similarity=0.293 Sum_probs=25.2
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEe
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYM---NYDIYNLN 251 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l---~~~~~~l~ 251 (600)
-+.|.||+|+||||+++.++..+ +.+++...
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 46788999999999999999988 45665443
No 349
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.17 E-value=0.061 Score=55.85 Aligned_cols=24 Identities=38% Similarity=0.614 Sum_probs=21.2
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHc
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l 243 (600)
.-+.|.|+||+|||||+.++++.+
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 357799999999999999999865
No 350
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.16 E-value=0.082 Score=49.91 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.7
Q ss_pred cceeeeCCCCCCHHHHHHHHHHH
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~ 242 (600)
.-+++.|++|+|||+|+.++.+.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999874
No 351
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.15 E-value=0.026 Score=61.05 Aligned_cols=27 Identities=22% Similarity=0.487 Sum_probs=23.7
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCc
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYD 246 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~ 246 (600)
.-++|.|.||+||||+++.+|..++..
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~~~ 66 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLNFI 66 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 468999999999999999999987543
No 352
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.14 E-value=0.033 Score=54.48 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=23.0
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcCC
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMNY 245 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~~ 245 (600)
+.-+.|.||.|+|||||++.|++.+.-
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~~p 57 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLDKP 57 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 345789999999999999999987743
No 353
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.12 E-value=0.034 Score=54.51 Aligned_cols=26 Identities=35% Similarity=0.336 Sum_probs=22.5
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHc
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l 243 (600)
.+.-+.|.||.|+|||||++.|++.+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34467899999999999999999965
No 354
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.08 E-value=0.058 Score=58.90 Aligned_cols=26 Identities=12% Similarity=0.009 Sum_probs=23.7
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCC
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNY 245 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~ 245 (600)
..+.|.|++||||||+++++|..++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 36789999999999999999999974
No 355
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.07 E-value=0.041 Score=51.42 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.7
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHc
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l 243 (600)
-+.|.||+|+|||||++.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999854
No 356
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.99 E-value=0.11 Score=48.39 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.5
Q ss_pred cceeeeCCCCCCHHHHHHHHHHH
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~ 242 (600)
.-+++.|++|+|||+|+.++.+.
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999863
No 357
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.97 E-value=0.053 Score=59.12 Aligned_cols=39 Identities=13% Similarity=-0.014 Sum_probs=31.0
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHc----CCcEEEEecC
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYM----NYDIYNLNLS 253 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l----~~~~~~l~~~ 253 (600)
|++++.-++|.|+||+|||+++..+|... |.++..+++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 56666678999999999999999998765 4567777654
No 358
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.96 E-value=0.064 Score=51.87 Aligned_cols=31 Identities=19% Similarity=0.169 Sum_probs=25.7
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIYNL 250 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~~~~l 250 (600)
.-+.|.|++|+||||+++.++..++.+...+
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~ 36 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPNCKLL 36 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSSEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccceEE
Confidence 3567889999999999999999998754433
No 359
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.95 E-value=0.36 Score=44.28 Aligned_cols=22 Identities=14% Similarity=0.365 Sum_probs=20.1
Q ss_pred cceeeeCCCCCCHHHHHHHHHH
Q 041382 220 RGYLLYGPPGTGKSSLIAAMAN 241 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~ 241 (600)
.-+++.|++|+|||+|+.++.+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999985
No 360
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.95 E-value=0.03 Score=54.39 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=22.0
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
.-+.|.||.|+|||||++++++.+.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3577999999999999999998764
No 361
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.89 E-value=0.071 Score=54.09 Aligned_cols=37 Identities=22% Similarity=0.347 Sum_probs=29.9
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCcc
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVV 255 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~ 255 (600)
+.-+++.||+|+||||++..+|..+ +..+..+++...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 4567788999999999999999877 677777776543
No 362
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.87 E-value=0.14 Score=48.00 Aligned_cols=21 Identities=19% Similarity=0.436 Sum_probs=19.5
Q ss_pred ceeeeCCCCCCHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMAN 241 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~ 241 (600)
-+++.|++|+|||+|+..+.+
T Consensus 31 ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhh
Confidence 589999999999999999976
No 363
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.86 E-value=0.076 Score=55.18 Aligned_cols=33 Identities=27% Similarity=0.370 Sum_probs=26.9
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEec
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNL 252 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~ 252 (600)
.-+.|.|+||+||||++.+++..+ |..+..+++
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~ 115 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAV 115 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 357899999999999999999876 666655554
No 364
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.83 E-value=0.041 Score=52.84 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=20.6
Q ss_pred cceeeeCCCCCCHHHHHHHHHHH
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~ 242 (600)
.-+.|.||.|+|||||+++++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35779999999999999999986
No 365
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=92.80 E-value=0.051 Score=60.80 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=20.7
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHc
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l 243 (600)
+-+++.||||||||+++.++...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 468999999999999998887654
No 366
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.79 E-value=0.13 Score=47.50 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=20.2
Q ss_pred cceeeeCCCCCCHHHHHHHHHH
Q 041382 220 RGYLLYGPPGTGKSSLIAAMAN 241 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~ 241 (600)
-.+++.|++|+|||+|+.++.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 3689999999999999999987
No 367
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.77 E-value=0.058 Score=48.94 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=20.1
Q ss_pred ceeeeCCCCCCHHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~ 242 (600)
.+++.|++|+|||+|+.++.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999863
No 368
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.73 E-value=0.049 Score=53.53 Aligned_cols=25 Identities=32% Similarity=0.588 Sum_probs=22.2
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
.-+.|.||.|+|||||++++++.+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4677999999999999999999764
No 369
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.73 E-value=0.061 Score=48.35 Aligned_cols=22 Identities=27% Similarity=0.375 Sum_probs=20.2
Q ss_pred ceeeeCCCCCCHHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~ 242 (600)
-+++.|++|+|||+|+.++.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999874
No 370
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.71 E-value=0.04 Score=53.22 Aligned_cols=27 Identities=26% Similarity=0.533 Sum_probs=22.9
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcCC
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMNY 245 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~~ 245 (600)
+.-+.|.||.|+|||||++++++.+..
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~p 61 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYLKP 61 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 345789999999999999999997643
No 371
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.70 E-value=0.056 Score=48.99 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.8
Q ss_pred ceeeeCCCCCCHHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~ 242 (600)
-+.|.|+||+|||||++++++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999863
No 372
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.69 E-value=0.043 Score=54.67 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=22.0
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
.-+.|.||.|+|||||+++|++.+.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3577999999999999999999764
No 373
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.67 E-value=0.037 Score=53.95 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=22.5
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
+.-+.|.||.|+|||||++++++.+.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 34578999999999999999999763
No 374
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=92.66 E-value=0.95 Score=43.02 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=15.6
Q ss_pred CcceeeeCCCCCCHHHHHH
Q 041382 219 KRGYLLYGPPGTGKSSLIA 237 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~ 237 (600)
++.+++.+|+|+|||...-
T Consensus 57 ~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 57 GIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEECCCCChHHHHHH
Confidence 3579999999999997543
No 375
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.65 E-value=0.049 Score=56.78 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=24.1
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcCCc
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMNYD 246 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~~~ 246 (600)
..-+.|.||+|+|||||++.||+.+..+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4468899999999999999999987643
No 376
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.62 E-value=0.042 Score=54.00 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=22.3
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHc
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l 243 (600)
.+.-+.|.||.|+|||||+++|++.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33457899999999999999999875
No 377
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.61 E-value=0.062 Score=48.79 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.6
Q ss_pred cceeeeCCCCCCHHHHHHHHHHH
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~ 242 (600)
..+++.|++|+|||+|+.++.+.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999874
No 378
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.58 E-value=0.035 Score=57.96 Aligned_cols=27 Identities=26% Similarity=0.493 Sum_probs=23.7
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
.+..++|.||+|+||||+++++++.+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 345789999999999999999999874
No 379
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.53 E-value=0.05 Score=54.40 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.6
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~ 244 (600)
.+.|.||+|+|||||+++|++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999999763
No 380
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.50 E-value=0.043 Score=54.74 Aligned_cols=25 Identities=24% Similarity=0.527 Sum_probs=22.1
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
.-+.|.||.|+|||||++.|++.+.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 3577999999999999999999764
No 381
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.46 E-value=0.043 Score=54.95 Aligned_cols=27 Identities=33% Similarity=0.459 Sum_probs=23.0
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
.+.-+.|.||.|+|||||++.|++.+.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 334578999999999999999999764
No 382
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.46 E-value=0.043 Score=54.44 Aligned_cols=25 Identities=36% Similarity=0.740 Sum_probs=22.1
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
.-+.|.||.|+|||||++++++.+.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3577999999999999999999774
No 383
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.46 E-value=0.056 Score=53.95 Aligned_cols=25 Identities=36% Similarity=0.496 Sum_probs=21.7
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHc
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l 243 (600)
+.-+.|.||.|+|||||++.|++..
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3457899999999999999999964
No 384
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.46 E-value=0.056 Score=48.50 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.9
Q ss_pred ceeeeCCCCCCHHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~ 242 (600)
-+++.|++|+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999863
No 385
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.43 E-value=0.047 Score=54.26 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=22.9
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
.+.-+.|.||.|+|||||+++|++.+.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 344678999999999999999998764
No 386
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.41 E-value=0.042 Score=60.73 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=22.6
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
..+.|.||+|+||||++++||+.++
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhc
Confidence 4578999999999999999999885
No 387
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.41 E-value=0.052 Score=53.60 Aligned_cols=24 Identities=38% Similarity=0.439 Sum_probs=21.2
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHH
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~ 242 (600)
+.-+.|.||.|+|||||++.|++.
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 335779999999999999999986
No 388
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.38 E-value=0.1 Score=50.97 Aligned_cols=32 Identities=31% Similarity=0.658 Sum_probs=26.5
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHc--CCcEEEEec
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYM--NYDIYNLNL 252 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l--~~~~~~l~~ 252 (600)
.+++.|.+|+||||++..+|..+ |..+..+++
T Consensus 16 i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~ 49 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNL 49 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 57889999999999999999876 666666654
No 389
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.34 E-value=0.042 Score=54.30 Aligned_cols=27 Identities=41% Similarity=0.514 Sum_probs=23.0
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcCC
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMNY 245 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~~ 245 (600)
+.-+.|.||.|+|||||++.|++.+..
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~p 52 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTSG 52 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 345779999999999999999997753
No 390
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.34 E-value=0.055 Score=50.01 Aligned_cols=21 Identities=24% Similarity=0.626 Sum_probs=19.4
Q ss_pred ceeeeCCCCCCHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMAN 241 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~ 241 (600)
-++|.|+||+|||||++.+++
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999986
No 391
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.33 E-value=0.046 Score=53.94 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=22.6
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
+.-+.|.||.|+|||||++.|++.+.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34578999999999999999999764
No 392
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.32 E-value=0.043 Score=55.15 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=22.1
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
.-+.|.||.|+|||||+++|++.+.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC
Confidence 3578999999999999999999764
No 393
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.30 E-value=0.066 Score=48.42 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=20.3
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHc
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l 243 (600)
-.+++||.|+|||+++.||+-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 45899999999999999998755
No 394
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=92.28 E-value=0.4 Score=54.45 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=16.3
Q ss_pred CcceeeeCCCCCCHHHHH
Q 041382 219 KRGYLLYGPPGTGKSSLI 236 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla 236 (600)
.+.+++.||+|+|||+.+
T Consensus 39 ~~~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIA 56 (720)
T ss_dssp TCEEEEECCGGGCHHHHH
T ss_pred CCcEEEEcCCccHHHHHH
Confidence 568999999999999887
No 395
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.23 E-value=0.061 Score=49.46 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.1
Q ss_pred ceeeeCCCCCCHHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~ 242 (600)
-+.|.|++|+|||||++++++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999873
No 396
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.21 E-value=0.07 Score=47.94 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=18.8
Q ss_pred ceeeeCCCCCCHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMAN 241 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~ 241 (600)
-+++.|+||+|||+|+.++++
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999964
No 397
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.20 E-value=0.058 Score=59.22 Aligned_cols=29 Identities=28% Similarity=0.338 Sum_probs=25.1
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHc
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l 243 (600)
|++.+..++|.||||+|||+|++.+|...
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 56666678999999999999999999865
No 398
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.19 E-value=0.075 Score=47.78 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=20.1
Q ss_pred cceeeeCCCCCCHHHHHHHHHH
Q 041382 220 RGYLLYGPPGTGKSSLIAAMAN 241 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~ 241 (600)
.-+++.|++|+|||+|+.++.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999976
No 399
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.15 E-value=0.05 Score=53.40 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=22.0
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
.-+.|.||.|+|||||++.+++.+.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3577999999999999999999764
No 400
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.14 E-value=0.067 Score=48.53 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=19.4
Q ss_pred ceeeeCCCCCCHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMAN 241 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~ 241 (600)
-+++.|+||+|||+|+.++.+
T Consensus 8 ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 589999999999999999975
No 401
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.14 E-value=0.055 Score=53.69 Aligned_cols=26 Identities=23% Similarity=0.508 Sum_probs=22.4
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
+.-+.|.||.|+|||||+++|++.+.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 33577999999999999999999764
No 402
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.12 E-value=0.064 Score=52.60 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=21.6
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHc
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l 243 (600)
.-+.|.||+|+||||+++.++..+
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 357789999999999999999987
No 403
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=92.12 E-value=0.19 Score=50.24 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=20.0
Q ss_pred ceeeeCCCCCCHHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~ 242 (600)
-+.|.|+||+|||||..++++.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5789999999999999999873
No 404
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.07 E-value=0.13 Score=53.06 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.3
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHc
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l 243 (600)
.-+.|.||||+|||||++++++.+
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 346799999999999999999876
No 405
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.06 E-value=0.33 Score=59.17 Aligned_cols=28 Identities=29% Similarity=0.471 Sum_probs=23.7
Q ss_pred CCCcceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 217 VWKRGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 217 ~~~rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
+++.-+-+.||.|+||||+++.+.+.+.
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred cCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 4445678999999999999999999774
No 406
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.99 E-value=0.058 Score=53.81 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=22.4
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
+.-+.|.||.|+|||||++.|++.+.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34577999999999999999999764
No 407
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.99 E-value=0.068 Score=48.36 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=19.6
Q ss_pred ceeeeCCCCCCHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMAN 241 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~ 241 (600)
-+++.|++|+|||+|+.++.+
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999986
No 408
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=91.96 E-value=0.17 Score=48.61 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=19.0
Q ss_pred ceeeeCCCCCCHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMAN 241 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~ 241 (600)
-++|.|.+|+|||+|+..+..
T Consensus 15 KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCcCHHHHHHHHHh
Confidence 489999999999999998876
No 409
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.95 E-value=0.05 Score=54.74 Aligned_cols=26 Identities=31% Similarity=0.658 Sum_probs=22.5
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCC
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNY 245 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~ 245 (600)
.-+.|.||.|+|||||++.|++.+..
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~~p 73 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYEPA 73 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 35779999999999999999997743
No 410
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.95 E-value=0.054 Score=53.65 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=22.3
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
+.-+.|.||.|+|||||++.+++.+.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 33577999999999999999999763
No 411
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.95 E-value=0.085 Score=47.82 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.4
Q ss_pred CcceeeeCCCCCCHHHHHHHHHH
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMAN 241 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~ 241 (600)
..-+++.|++|+|||+|+.++.+
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34689999999999999999976
No 412
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.89 E-value=0.15 Score=51.68 Aligned_cols=35 Identities=23% Similarity=0.342 Sum_probs=27.9
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecC
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLS 253 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~ 253 (600)
++.+.+.||+|+||||++..+|..+ +..+..+++.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d 135 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 4467788999999999999999876 5666666653
No 413
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.87 E-value=0.064 Score=58.84 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=29.1
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHH--HHHHc--CCcEEEEecCc
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAA--MANYM--NYDIYNLNLSV 254 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~a--lA~~l--~~~~~~l~~~~ 254 (600)
+++.+.-++|.||+|+|||||++. ++... +...+.++...
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 456666799999999999999999 55544 34455565443
No 414
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.86 E-value=0.054 Score=54.05 Aligned_cols=26 Identities=31% Similarity=0.640 Sum_probs=22.4
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
+.-+-|.||.|+|||||+++|++.+.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 34577999999999999999999764
No 415
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.83 E-value=0.071 Score=55.67 Aligned_cols=25 Identities=36% Similarity=0.592 Sum_probs=21.7
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
.-+.|.||.|+|||||.++||+...
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC
Confidence 3467999999999999999999763
No 416
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=91.80 E-value=0.23 Score=46.18 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=19.9
Q ss_pred ceeeeCCCCCCHHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~ 242 (600)
-+++.|++|+|||+|++.+.+.
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999988774
No 417
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.77 E-value=0.062 Score=56.06 Aligned_cols=25 Identities=24% Similarity=0.565 Sum_probs=21.8
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
.-+.|.||.|+|||||.++||+...
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC
Confidence 3467999999999999999999763
No 418
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.74 E-value=0.073 Score=55.54 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=21.8
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
.-+.|.||+|+|||||.+.||+...
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHHCCCC
Confidence 3467999999999999999999763
No 419
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=91.73 E-value=0.077 Score=48.09 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.7
Q ss_pred cceeeeCCCCCCHHHHHHHHHHH
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~ 242 (600)
..+++.|++|+|||+|+.++.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999875
No 420
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.70 E-value=0.068 Score=55.67 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=21.8
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
.-+.|.||.|+|||||.+.||+...
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3567999999999999999999763
No 421
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.67 E-value=0.076 Score=55.68 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=21.8
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
.-+.|.||.|+|||||.+.||+...
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC
Confidence 3467999999999999999999763
No 422
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=91.67 E-value=0.09 Score=51.07 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=22.3
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCC
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNY 245 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~ 245 (600)
.-+.|.|++|+||||+++.++..++.
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34678899999999999999998754
No 423
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.64 E-value=0.078 Score=48.81 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.6
Q ss_pred cceeeeCCCCCCHHHHHHHHHHH
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~ 242 (600)
--+++.|++|+|||+|+.++++.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999874
No 424
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.62 E-value=0.087 Score=47.74 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=19.7
Q ss_pred cceeeeCCCCCCHHHHHHHHHH
Q 041382 220 RGYLLYGPPGTGKSSLIAAMAN 241 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~ 241 (600)
.-+++.|++|+|||+|+.++.+
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999865
No 425
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.62 E-value=0.078 Score=55.75 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=21.9
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
.-+-|.||+|+|||||++.||+...
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHHcCCC
Confidence 3467999999999999999999764
No 426
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.61 E-value=0.079 Score=48.50 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.5
Q ss_pred cceeeeCCCCCCHHHHHHHHHHH
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~ 242 (600)
.-+++.|++|+|||+|+.++.+.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999873
No 427
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=91.60 E-value=0.33 Score=57.45 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.5
Q ss_pred CcceeeeCCCCCCHHHHHHHHH
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMA 240 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA 240 (600)
++.++|.||.|+||||+.+.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 4578899999999999999984
No 428
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=91.60 E-value=0.085 Score=60.95 Aligned_cols=34 Identities=32% Similarity=0.365 Sum_probs=24.9
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHc----CCcEEEEecCc
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYM----NYDIYNLNLSV 254 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l----~~~~~~l~~~~ 254 (600)
-+|+.||||||||+++..++..+ +..+..+..+.
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn 414 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSN 414 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcH
Confidence 57899999999999888776644 45565555443
No 429
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.56 E-value=0.095 Score=48.37 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.2
Q ss_pred ceeeeCCCCCCHHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~ 242 (600)
-+++.|++|+|||+|+.++.+.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999874
No 430
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.56 E-value=0.097 Score=47.54 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=20.1
Q ss_pred ceeeeCCCCCCHHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~ 242 (600)
-+++.|++|+|||+|+.++.+.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999873
No 431
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.54 E-value=0.083 Score=50.89 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=21.1
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHc
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l 243 (600)
-+.|.|++|+||||.++.++..+
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46788999999999999999987
No 432
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.50 E-value=0.098 Score=47.79 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=20.2
Q ss_pred ceeeeCCCCCCHHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~ 242 (600)
-+++.|++|+|||+|+.++.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999874
No 433
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=91.49 E-value=0.1 Score=53.36 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=24.1
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcCCcEE
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMNYDIY 248 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~~~~~ 248 (600)
.+|++|.|++|+|||+++.++... |..++
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 469999999999999999999875 44443
No 434
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.49 E-value=0.085 Score=50.14 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.3
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
+.+++.|++|+||||++..++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4688999999999999999998864
No 435
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=91.48 E-value=0.18 Score=52.83 Aligned_cols=35 Identities=14% Similarity=0.219 Sum_probs=28.3
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecC
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLS 253 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~ 253 (600)
..++++.||+|+|||++++.++..+ +..++.+|..
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3478999999999999999998764 6667777653
No 436
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=91.47 E-value=0.18 Score=49.81 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=20.0
Q ss_pred ceeeeCCCCCCHHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~ 242 (600)
-+.|.|+||+|||||+.++.+.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5889999999999999999874
No 437
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.42 E-value=0.13 Score=56.62 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=26.2
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcC---CcEEEEe
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMN---YDIYNLN 251 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~---~~~~~l~ 251 (600)
.-++|.|+||+||||+++.++..++ .+++.++
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld 407 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLD 407 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEEC
Confidence 3578999999999999999999874 4566555
No 438
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.41 E-value=0.044 Score=50.95 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.8
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~ 244 (600)
.+.|.||+|+|||||++.+++.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 578999999999999999999874
No 439
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=91.41 E-value=0.072 Score=48.77 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=20.0
Q ss_pred ceeeeCCCCCCHHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~ 242 (600)
-+.|.|+||+|||||+.++++.
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 440
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.37 E-value=0.077 Score=55.66 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=21.4
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHc
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l 243 (600)
.-+.|.||.|+|||||.+.||+..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCC
Confidence 357799999999999999999965
No 441
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.31 E-value=0.1 Score=47.56 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=19.9
Q ss_pred ceeeeCCCCCCHHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~ 242 (600)
.+++.|++|+|||+|+.++.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 442
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.24 E-value=0.11 Score=47.29 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.4
Q ss_pred cceeeeCCCCCCHHHHHHHHHHH
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~ 242 (600)
--+++.|++|+|||+|+.++...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999864
No 443
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=91.24 E-value=0.56 Score=45.51 Aligned_cols=17 Identities=24% Similarity=0.509 Sum_probs=14.8
Q ss_pred cceeeeCCCCCCHHHHH
Q 041382 220 RGYLLYGPPGTGKSSLI 236 (600)
Q Consensus 220 rgiLL~GppGtGKTsla 236 (600)
+.+++.+|+|+|||...
T Consensus 61 ~~~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAF 77 (253)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CCEEEECCCCChHHHHH
Confidence 57999999999999754
No 444
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.22 E-value=0.11 Score=48.53 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.7
Q ss_pred cceeeeCCCCCCHHHHHHHHHHH
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~ 242 (600)
.-+++.|++|+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36899999999999999999874
No 445
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.21 E-value=0.11 Score=48.09 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.9
Q ss_pred ceeeeCCCCCCHHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~ 242 (600)
-+++.|++|+|||+|+..+.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 5899999999999999999873
No 446
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.20 E-value=0.084 Score=48.00 Aligned_cols=22 Identities=32% Similarity=0.317 Sum_probs=20.2
Q ss_pred ceeeeCCCCCCHHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~ 242 (600)
-+++.|+||+|||+|+..+++.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 447
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=91.19 E-value=0.14 Score=53.18 Aligned_cols=29 Identities=28% Similarity=0.439 Sum_probs=24.8
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCcEE
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIY 248 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~~~ 248 (600)
.-+.|.||+|+|||||++.|++....+..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~~~~g 100 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGASADII 100 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCEE
Confidence 34789999999999999999999876543
No 448
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.18 E-value=0.085 Score=48.76 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=20.4
Q ss_pred cceeeeCCCCCCHHHHHHHHHHH
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~ 242 (600)
.-+++.|++|+|||||+.++.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999763
No 449
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.18 E-value=0.11 Score=47.89 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=19.7
Q ss_pred ceeeeCCCCCCHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMAN 241 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~ 241 (600)
-+++.|++|+|||+|+.++.+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999986
No 450
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.12 E-value=0.17 Score=48.25 Aligned_cols=30 Identities=27% Similarity=0.588 Sum_probs=24.5
Q ss_pred eeeeCCCCCCHHHHHHHHHHHc--CCcEEEEe
Q 041382 222 YLLYGPPGTGKSSLIAAMANYM--NYDIYNLN 251 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l--~~~~~~l~ 251 (600)
|.|-|+.|+||||.++.++..+ |.+++...
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~ 36 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR 36 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHCCCCEEEee
Confidence 5688999999999999999988 45555443
No 451
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.12 E-value=0.11 Score=47.96 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=20.1
Q ss_pred ceeeeCCCCCCHHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~ 242 (600)
-+++.|++|+|||+|+.++.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 452
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.11 E-value=0.095 Score=48.75 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=19.8
Q ss_pred ceeeeCCCCCCHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMAN 241 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~ 241 (600)
-+++.|+||+|||+|+.++++
T Consensus 25 ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999987
No 453
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.05 E-value=0.083 Score=52.64 Aligned_cols=25 Identities=28% Similarity=0.697 Sum_probs=22.0
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHc
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l 243 (600)
+.-+.|.||.|+|||||++.|++.+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3457899999999999999999976
No 454
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.00 E-value=0.065 Score=55.66 Aligned_cols=25 Identities=24% Similarity=0.631 Sum_probs=21.9
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
.-+.|.||.|+|||||.+.||+...
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCccHHHHHHHHHcCCC
Confidence 3567999999999999999999764
No 455
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=90.99 E-value=1.5 Score=42.04 Aligned_cols=17 Identities=35% Similarity=0.591 Sum_probs=14.9
Q ss_pred cceeeeCCCCCCHHHHH
Q 041382 220 RGYLLYGPPGTGKSSLI 236 (600)
Q Consensus 220 rgiLL~GppGtGKTsla 236 (600)
+.+++.+|+|+|||...
T Consensus 67 ~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAF 83 (245)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 57999999999999863
No 456
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=90.98 E-value=0.088 Score=48.29 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.7
Q ss_pred ceeeeCCCCCCHHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~ 242 (600)
-+++.|++|+|||||+.++.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999999863
No 457
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=90.96 E-value=0.17 Score=54.28 Aligned_cols=30 Identities=33% Similarity=0.509 Sum_probs=25.0
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcCCcEEE
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMNYDIYN 249 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~~~~~~ 249 (600)
.-+.|.||+|+|||||++.||+........
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~~~~~G~ 187 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYTRADVIV 187 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCSEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCeEE
Confidence 347799999999999999999998665433
No 458
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=90.95 E-value=0.12 Score=47.91 Aligned_cols=22 Identities=32% Similarity=0.667 Sum_probs=20.0
Q ss_pred ceeeeCCCCCCHHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~ 242 (600)
-+++.|++|+|||+|+.++.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999863
No 459
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=90.91 E-value=0.12 Score=47.89 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=20.4
Q ss_pred ceeeeCCCCCCHHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~ 242 (600)
-+++.|++|+|||+|+.++.+.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 460
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.91 E-value=0.12 Score=48.51 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.5
Q ss_pred cceeeeCCCCCCHHHHHHHHHHH
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~ 242 (600)
.-+++.|+||+|||+|+.++.+.
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999863
No 461
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=90.90 E-value=0.14 Score=54.32 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.4
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHc
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l 243 (600)
-+-|.||+|+|||||++++++..
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 46699999999999999999854
No 462
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.89 E-value=0.068 Score=54.07 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.3
Q ss_pred CCcceeeeCCCCCCHHHHHHHHHHHc
Q 041382 218 WKRGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 218 ~~rgiLL~GppGtGKTsla~alA~~l 243 (600)
.+.-+.|.||.|+|||||++.|++.+
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 33457899999999999999999975
No 463
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=90.89 E-value=0.1 Score=48.37 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=20.2
Q ss_pred ceeeeCCCCCCHHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~ 242 (600)
-+++.|++|+|||+|+.++.+.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 464
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.84 E-value=0.1 Score=48.26 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=20.8
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHc
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l 243 (600)
-++|.|++|+|||+|+.++.+.-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 465
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=90.72 E-value=0.11 Score=48.74 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.4
Q ss_pred cceeeeCCCCCCHHHHHHHHHHH
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~ 242 (600)
.-++|.|++|+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999873
No 466
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.71 E-value=0.12 Score=49.92 Aligned_cols=29 Identities=31% Similarity=0.534 Sum_probs=23.3
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNYDIYNL 250 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~~~~~l 250 (600)
-+-|.||.|+||||+++.+++. +..++..
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~-~g~v~~~ 50 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY-KNDICLL 50 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG-TTTEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhc-cCCeEEE
Confidence 3668899999999999999987 5445443
No 467
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=90.69 E-value=0.11 Score=47.34 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=20.0
Q ss_pred cceeeeCCCCCCHHHHHHHHHH
Q 041382 220 RGYLLYGPPGTGKSSLIAAMAN 241 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~ 241 (600)
.-+++.|++|+|||+|+.++.+
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 3689999999999999999985
No 468
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=90.69 E-value=0.11 Score=56.05 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=23.8
Q ss_pred CCCCcceeeeCCCCCCHHHHHHHHHHHc
Q 041382 216 KVWKRGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 216 ~~~~rgiLL~GppGtGKTsla~alA~~l 243 (600)
+..+.-+.|.||.|+|||||++.||+.+
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3444568899999999999999999976
No 469
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=90.67 E-value=0.058 Score=50.73 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=19.8
Q ss_pred cceeeeCCCCCCHHHHHHHHHHH
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~ 242 (600)
.-+.|.|++|+|||||++++++.
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999998753
No 470
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.64 E-value=0.11 Score=55.32 Aligned_cols=21 Identities=38% Similarity=0.555 Sum_probs=19.7
Q ss_pred eeeeCCCCCCHHHHHHHHHHH
Q 041382 222 YLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~ 242 (600)
+.|.||+|+|||||+++|++.
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 679999999999999999986
No 471
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=90.64 E-value=0.1 Score=53.24 Aligned_cols=30 Identities=33% Similarity=0.349 Sum_probs=24.2
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHcCCcEEE
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYMNYDIYN 249 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l~~~~~~ 249 (600)
.+|+||.|++|+|||++|.++.. -|..++.
T Consensus 147 g~gvli~G~sG~GKStlal~l~~-~G~~lv~ 176 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN-KNHLFVG 176 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT-TTCEEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH-cCCEEEe
Confidence 56999999999999999988765 4555554
No 472
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.63 E-value=0.12 Score=47.24 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=20.0
Q ss_pred CcceeeeCCCCCCHHHHHHHHHH
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMAN 241 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~ 241 (600)
+.-+++.|++|+|||+|+.++.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 44789999999999999998863
No 473
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=90.61 E-value=0.095 Score=48.10 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=20.5
Q ss_pred CcceeeeCCCCCCHHHHHHHHHH
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMAN 241 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~ 241 (600)
..-+++.|++|+|||+|+.++.+
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999975
No 474
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=90.60 E-value=0.096 Score=52.01 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=20.4
Q ss_pred cceeeeCCCCCCHHHHHHHHHHH
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~ 242 (600)
..+.|.|+||+|||||+.++.+.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999764
No 475
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=90.47 E-value=0.12 Score=50.18 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.6
Q ss_pred cceeeeCCCCCCHHHHHHHHHHH
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~ 242 (600)
.-++|.|++|+|||||+.++.+.
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 36899999999999999999873
No 476
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=90.40 E-value=0.11 Score=47.79 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=20.5
Q ss_pred cceeeeCCCCCCHHHHHHHHHHH
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~ 242 (600)
.-+++.|++|+|||||+.++.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999874
No 477
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=90.34 E-value=0.12 Score=49.21 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=21.4
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHc
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l 243 (600)
.-+++.|++|+|||||+..++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 467888999999999999999875
No 478
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=90.33 E-value=0.21 Score=51.55 Aligned_cols=33 Identities=21% Similarity=0.399 Sum_probs=25.6
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEe
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLN 251 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~ 251 (600)
..-+.+.|+||+||||++.+++..+ +..+..++
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~ 91 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIA 91 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 3457789999999999999999875 55554444
No 479
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=90.32 E-value=0.049 Score=53.08 Aligned_cols=23 Identities=35% Similarity=0.431 Sum_probs=20.4
Q ss_pred eeeeCCCCCCHHHHHHHHHHHcC
Q 041382 222 YLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l~ 244 (600)
+.|.||.|+||||++++|+..+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 45789999999999999999874
No 480
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=90.32 E-value=0.085 Score=48.21 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=9.7
Q ss_pred cceeeeCCCCCCHHHHHHHHHH
Q 041382 220 RGYLLYGPPGTGKSSLIAAMAN 241 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~ 241 (600)
.-+++.|++|+|||+|+.++.+
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEECCCCC-----------
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999875
No 481
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=90.28 E-value=0.066 Score=55.75 Aligned_cols=24 Identities=25% Similarity=0.596 Sum_probs=21.3
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHc
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l 243 (600)
.-+.|.||.|+|||||.+.||+..
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 346799999999999999999965
No 482
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=90.26 E-value=0.13 Score=53.53 Aligned_cols=25 Identities=40% Similarity=0.563 Sum_probs=21.8
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
.-+.|.||+|+|||||+++|+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 3578999999999999999997654
No 483
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.21 E-value=0.11 Score=54.93 Aligned_cols=25 Identities=32% Similarity=0.522 Sum_probs=21.8
Q ss_pred CcceeeeCCCCCCHHHHHHHHHHHc
Q 041382 219 KRGYLLYGPPGTGKSSLIAAMANYM 243 (600)
Q Consensus 219 ~rgiLL~GppGtGKTsla~alA~~l 243 (600)
+.-+.|.||+|+|||||++.||+.+
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCChHHHHHHHHhCCC
Confidence 3457899999999999999999865
No 484
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=90.19 E-value=0.13 Score=48.71 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=20.4
Q ss_pred ceeeeCCCCCCHHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~ 242 (600)
-+++.|++|+|||+|+..+++.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 485
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.09 E-value=0.13 Score=53.67 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=22.0
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
.-+-|.||.|+|||||+++|+..+.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHhcCCC
Confidence 3577999999999999999999764
No 486
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=90.06 E-value=0.16 Score=47.40 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=19.8
Q ss_pred ceeeeCCCCCCHHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~ 242 (600)
-++|.|+||+|||+|+..+++.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999863
No 487
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.00 E-value=0.068 Score=54.50 Aligned_cols=28 Identities=25% Similarity=0.532 Sum_probs=23.8
Q ss_pred CCCcceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 217 VWKRGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 217 ~~~rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
+++.-+-|.||.|+|||||++.|++.+.
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 4445688999999999999999999764
No 488
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=89.95 E-value=0.15 Score=50.18 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=23.5
Q ss_pred eeeeCCCCCCHHHHHHHHHHHcCCcE
Q 041382 222 YLLYGPPGTGKSSLIAAMANYMNYDI 247 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l~~~~ 247 (600)
+-|.|++|||||++++.++..+|.++
T Consensus 4 i~ltG~~~sGK~tv~~~l~~~~g~~~ 29 (241)
T 1dek_A 4 IFLSGVKRSGKDTTADFIMSNYSAVK 29 (241)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 67999999999999999999888665
No 489
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.95 E-value=0.14 Score=48.37 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=20.1
Q ss_pred ceeeeCCCCCCHHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~ 242 (600)
-++|.|++|+|||+|+.++.+.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999863
No 490
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=89.93 E-value=0.25 Score=46.72 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=25.4
Q ss_pred eeeeCCCCCCHHHHHHHHHHHc---CCcEEEEec
Q 041382 222 YLLYGPPGTGKSSLIAAMANYM---NYDIYNLNL 252 (600)
Q Consensus 222 iLL~GppGtGKTsla~alA~~l---~~~~~~l~~ 252 (600)
|.|-|+.|+||||.++.++..| |.+++...-
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tre 36 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 4578999999999999999987 667765543
No 491
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=89.90 E-value=0.13 Score=47.87 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=19.6
Q ss_pred cceeeeCCCCCCHHHHHHHHHH
Q 041382 220 RGYLLYGPPGTGKSSLIAAMAN 241 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~ 241 (600)
.-+++.|++|+|||+|+.++..
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCS
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999864
No 492
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=89.82 E-value=0.12 Score=52.44 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=21.7
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
.-+.|.||+|+|||||+++|+....
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhccccc
Confidence 3577999999999999999998664
No 493
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=89.78 E-value=0.22 Score=47.46 Aligned_cols=39 Identities=23% Similarity=0.181 Sum_probs=29.7
Q ss_pred CCCCcceeeeCCCCCCHHHHHHHHHHHcCCc-EEEEecCc
Q 041382 216 KVWKRGYLLYGPPGTGKSSLIAAMANYMNYD-IYNLNLSV 254 (600)
Q Consensus 216 ~~~~rgiLL~GppGtGKTsla~alA~~l~~~-~~~l~~~~ 254 (600)
-.|+.-|++.|.||+||++++..+.+.++.. +..+.+++
T Consensus 8 ~~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD 47 (202)
T 3ch4_B 8 GAPRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSG 47 (202)
T ss_dssp CCCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHH
T ss_pred cCCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccH
Confidence 3466688999999999999999999877643 44455443
No 494
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=89.77 E-value=0.29 Score=46.26 Aligned_cols=31 Identities=19% Similarity=0.142 Sum_probs=24.7
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHc---CCcEEEE
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYM---NYDIYNL 250 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l---~~~~~~l 250 (600)
+-++++||+|+|||+.+-.+|..+ +..++.+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~ 42 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF 42 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 356889999999999998888765 6666655
No 495
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=89.75 E-value=0.18 Score=47.94 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=21.9
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHcCC
Q 041382 221 GYLLYGPPGTGKSSLIAAMANYMNY 245 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~l~~ 245 (600)
-.+|+||.|+|||+++.||.-.++.
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 4689999999999999999887754
No 496
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.66 E-value=0.15 Score=47.09 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=20.3
Q ss_pred ceeeeCCCCCCHHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~ 242 (600)
.+++.|++|+|||+|+.++.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 497
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.63 E-value=0.15 Score=47.91 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=20.2
Q ss_pred ceeeeCCCCCCHHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMANY 242 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~~ 242 (600)
-+++.|++|+|||+|+.++.+.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999873
No 498
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=89.58 E-value=0.17 Score=47.05 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=19.3
Q ss_pred ceeeeCCCCCCHHHHHHHHHH
Q 041382 221 GYLLYGPPGTGKSSLIAAMAN 241 (600)
Q Consensus 221 giLL~GppGtGKTsla~alA~ 241 (600)
-+++.|++|+|||+|+.++.+
T Consensus 22 ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999875
No 499
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=89.50 E-value=0.16 Score=51.43 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=20.6
Q ss_pred cceeeeCCCCCCHHHHHHHHHHHcC
Q 041382 220 RGYLLYGPPGTGKSSLIAAMANYMN 244 (600)
Q Consensus 220 rgiLL~GppGtGKTsla~alA~~l~ 244 (600)
.-+.|.||+|+|||||+++|+ ...
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 357899999999999999999 553
No 500
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=89.43 E-value=0.4 Score=49.55 Aligned_cols=50 Identities=20% Similarity=0.266 Sum_probs=36.2
Q ss_pred CCCCCcceeeeCCCCCCHHHHHHHHHHHc---CCcEEEEecCccCChhHHHHHHhh
Q 041382 215 GKVWKRGYLLYGPPGTGKSSLIAAMANYM---NYDIYNLNLSVVTSDSSLEYLLLH 267 (600)
Q Consensus 215 g~~~~rgiLL~GppGtGKTsla~alA~~l---~~~~~~l~~~~~~~~~~l~~~~~~ 267 (600)
+.+.++-++..|.+|+||||++.++|..+ |.++..+|+.- . ..+...|..
T Consensus 22 ~~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~-~--~~l~~~l~~ 74 (349)
T 3ug7_A 22 KKDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP-A--HSLRDIFEQ 74 (349)
T ss_dssp SSCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT-T--CHHHHHHCS
T ss_pred ccCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC-C--CCHHHHhCC
Confidence 34555566777999999999999999875 78888888653 2 355555543
Done!