BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041384
         (580 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|255561305|ref|XP_002521663.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539054|gb|EEF40650.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 578

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/576 (57%), Positives = 431/576 (74%), Gaps = 2/576 (0%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           MVSK    Q L  YK ELH S +Y+N  I+PSVIKAC+++  H HFG+QL+   LKSG D
Sbjct: 1   MVSKGLNHQILKFYK-ELHSSDIYANAYIIPSVIKACSFSNCH-HFGIQLYSIVLKSGLD 58

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
           +D VI NS IS YAK S  ESA ++FD MP +D ISWN IIN + QNG++ +   MF+EM
Sbjct: 59  SDFVICNSFISFYAKSSCTESALKVFDTMPLKDPISWNCIINGYFQNGYFTQGFIMFKEM 118

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
           Y CG V K EL+A ++S+C ++G+++LGR IHALV++DG     +FV T+L+D Y K   
Sbjct: 119 YECGIVPKPELVASVVSVCVRLGDMKLGRAIHALVLIDGRIAKEIFVLTSLVDWYFKSGD 178

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
            L+ALRVF+Q+ ++N VSWTA++SGC  + +Y+  +D FRAMQ  GV+P RVTL  +L A
Sbjct: 179 SLMALRVFDQIEVKNVVSWTALVSGCSANLDYNMALDCFRAMQINGVRPNRVTLIAILPA 238

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
            AEL   + GK IHGYA+  GFD DHH  ++L+H+YC   E L  A++ FER+ VKDVV+
Sbjct: 239 FAELGCAKTGKEIHGYAFRHGFDLDHHFLSSLIHIYCRSREGLQLAKLTFERSNVKDVVM 298

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           WSSII  Y +S D  EA+KLF  MR +  EPNSVTLLA++++CT  + L +G G H YI+
Sbjct: 299 WSSIIGSYCRSADSIEALKLFRWMRADGTEPNSVTLLAVITACTTLTSLKNGYGTHGYIV 358

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
           K GLNFD  IGNAL+NMYSKCG + +SHQIF EM  +D VSW+TLI+ YG HG+G+EAL 
Sbjct: 359 KCGLNFDTYIGNALINMYSKCGCVVASHQIFKEMHIKDSVSWSTLITAYGLHGHGKEALC 418

Query: 421 LFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLL 480
           LF EMQ  GVEPDA+T LA+LSACNH+GLVKE + +F+NV K+ K++L +EHYAC VDLL
Sbjct: 419 LFHEMQLQGVEPDAMTFLAVLSACNHSGLVKEGQQIFDNVKKDGKVSLTVEHYACLVDLL 478

Query: 481 GKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYT 540
           GKSGK++DA  ++  MPMKPST I SSLVSAC+IHGRLE+AE LA +LI++EP NAAN+T
Sbjct: 479 GKSGKVDDAFDILRAMPMKPSTTIWSSLVSACKIHGRLEIAERLAQELIKSEPSNAANHT 538

Query: 541 LLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
           LLSM+ +ESGNW   E+V R+MR +GLSK YGFS++
Sbjct: 539 LLSMIYAESGNWFAVEDVRRLMRVQGLSKCYGFSQV 574


>gi|356557599|ref|XP_003547103.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31070,
           mitochondrial-like [Glycine max]
          Length = 601

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/577 (55%), Positives = 415/577 (71%), Gaps = 2/577 (0%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
            +SK  Y QTL L+  ELH  G  S +  LPSVIKA + AQ H  FG QLHC ALK+GS 
Sbjct: 26  FLSKGLYHQTLQLF-SELHLCGHSSISFFLPSVIKASSSAQCHT-FGTQLHCLALKTGSH 83

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
           ++ V+SNS+I+MY KFS   SA Q+FD MP+RD I+WNS+IN +  NG+   +LE   ++
Sbjct: 84  SETVVSNSIITMYFKFSDVGSARQVFDTMPHRDPITWNSLINGYLHNGYLEEALEALNDV 143

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
           YL G V K ELLA ++S+C +    ++GRQIHALV+V+     S+F+STAL+D Y +C  
Sbjct: 144 YLLGLVPKPELLASVVSMCGRRMGSKIGRQIHALVVVNERIGQSMFLSTALVDFYFRCGD 203

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
            L+ALRVF+ M ++N VSWT MISGCI  Q+YD     FRAMQ EGV P RVT   +L A
Sbjct: 204 SLMALRVFDGMEVKNVVSWTTMISGCIAHQDYDEAFACFRAMQAEGVCPNRVTSIALLSA 263

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
           CAE   +++GK IHGYA+  GF+     S+AL++MYC+C E +H A +IFE +  +DVV+
Sbjct: 264 CAEPGFVKHGKEIHGYAFRHGFESCPSFSSALVNMYCQCGEPMHLAELIFEGSSFRDVVL 323

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           WSSII  +S+ GD  +A+KLF++MR E IEPN VTLLA++S+CT  S L HG G+H YI 
Sbjct: 324 WSSIIGSFSRRGDSFKALKLFNKMRTEEIEPNYVTLLAVISACTNLSSLKHGCGLHGYIF 383

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
           K G  F +S+GNAL+NMY+KCG +  S ++F EM  RD V+W++LIS YG HG GE+ALQ
Sbjct: 384 KFGFCFSISVGNALINMYAKCGCLNGSRKMFLEMPNRDNVTWSSLISAYGLHGCGEQALQ 443

Query: 421 LFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLL 480
           +F EM E GV+PDAIT LA+LSACNHAGLV E + +F  V  + +I L IEHYAC VDLL
Sbjct: 444 IFYEMNERGVKPDAITFLAVLSACNHAGLVAEGQRIFKQVRADCEIPLTIEHYACLVDLL 503

Query: 481 GKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYT 540
           G+SGK+E A ++  TMPMKPS RI SSLVSAC++HGRL++AEMLA QLI +EP NA NYT
Sbjct: 504 GRSGKLEYALEIRRTMPMKPSARIWSSLVSACKLHGRLDIAEMLAPQLIRSEPNNAGNYT 563

Query: 541 LLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           LL+ + +E G+WL  E+V   M+ + L K YGFSRIE
Sbjct: 564 LLNTIYAEHGHWLDTEQVREAMKLQKLKKCYGFSRIE 600



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 131/468 (27%), Positives = 230/468 (49%), Gaps = 9/468 (1%)

Query: 101 INCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGS 160
           I  F   G Y ++L++F E++LCG    +  L  +I   S       G Q+H L +  GS
Sbjct: 23  IKSFLSKGLYHQTLQLFSELHLCGHSSISFFLPSVIKASSSAQCHTFGTQLHCLALKTGS 82

Query: 161 FELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFR 220
              +V VS +++ +Y K      A +VF+ M  R+ ++W ++I+G + +   +  ++   
Sbjct: 83  HSETV-VSNSIITMYFKFSDVGSARQVFDTMPHRDPITWNSLINGYLHNGYLEEALEALN 141

Query: 221 AMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC-GFDFDHHLSAALMHMYCEC 279
            +   G+ P    L  V+  C      + G+ IH              LS AL+  Y  C
Sbjct: 142 DVYLLGLVPKPELLASVVSMCGRRMGSKIGRQIHALVVVNERIGQSMFLSTALVDFYFRC 201

Query: 280 TEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAI 339
            ++L   R +F+  +VK+VV W+++I G     D  EA   F  M+ E + PN VT +A+
Sbjct: 202 GDSLMALR-VFDGMEVKNVVSWTTMISGCIAHQDYDEAFACFRAMQAEGVCPNRVTSIAL 260

Query: 340 LSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCG-SITSSHQIFNEMAARD 398
           LS+C    F+ HG  +H Y  + G     S  +AL+NMY +CG  +  +  IF   + RD
Sbjct: 261 LSACAEPGFVKHGKEIHGYAFRHGFESCPSFSSALVNMYCQCGEPMHLAELIFEGSSFRD 320

Query: 399 FVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFN 458
            V W+++I  +   G   +AL+LF +M+   +EP+ +T+LA++SAC +   +K    L  
Sbjct: 321 VVLWSSIIGSFSRRGDSFKALKLFNKMRTEEIEPNYVTLLAVISACTNLSSLKHGCGLHG 380

Query: 459 NVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRL 518
            + K      +I      +++  K G +  + K+   MP + +    SSL+SA  +HG  
Sbjct: 381 YIFK-FGFCFSISVGNALINMYAKCGCLNGSRKMFLEMPNRDNV-TWSSLISAYGLHGCG 438

Query: 519 EVAEMLAHQLIE--AEPENAANYTLLSMVCSESGNWLGAEEVWRVMRA 564
           E A  + +++ E   +P+      +LS  C+ +G     + +++ +RA
Sbjct: 439 EQALQIFYEMNERGVKPDAITFLAVLS-ACNHAGLVAEGQRIFKQVRA 485



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 120/252 (47%), Gaps = 6/252 (2%)

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           S+ I+ +   G   + ++LFS + L      S  L +++ + +     + G  +HC  +K
Sbjct: 20  SNQIKSFLSKGLYHQTLQLFSELHLCGHSSISFFLPSVIKASSSAQCHTFGTQLHCLALK 79

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
            G + +  + N+++ MY K   + S+ Q+F+ M  RD ++W +LI+GY  +GY EEAL+ 
Sbjct: 80  TGSHSETVVSNSIITMYFKFSDVGSARQVFDTMPHRDPITWNSLINGYLHNGYLEEALEA 139

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
             ++   G+ P    + +++S C      K    +   V+  ++I  ++      VD   
Sbjct: 140 LNDVYLLGLVPKPELLASVVSMCGRRMGSKIGRQIHALVVVNERIGQSMFLSTALVDFYF 199

Query: 482 KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE---PENAAN 538
           + G    A +V   M +K +    ++++S C  H   + A     + ++AE   P    +
Sbjct: 200 RCGDSLMALRVFDGMEVK-NVVSWTTMISGCIAHQDYDEA-FACFRAMQAEGVCPNRVTS 257

Query: 539 YTLLSMVCSESG 550
             LLS  C+E G
Sbjct: 258 IALLS-ACAEPG 268


>gi|357446017|ref|XP_003593286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355482334|gb|AES63537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 622

 Score =  639 bits (1648), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 313/583 (53%), Positives = 420/583 (72%), Gaps = 8/583 (1%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTA--ILPSVIKACAYAQTHQHFGLQLHCTALKSG 58
           +VS   Y QTL  + Q LH S  + N+   +LPSVIKAC++   H  FG QLHC A  +G
Sbjct: 39  LVSMGLYHQTLQFFTQ-LHFSAHHFNSIPFVLPSVIKACSFTHFHA-FGTQLHCLAFITG 96

Query: 59  SDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFR 118
           S  DP++SNS+ISMYAKF   ESA Q+FD MP+RDTI+WNS+IN + QNG  V +L+M +
Sbjct: 97  SYTDPIVSNSIISMYAKFFDIESARQVFDTMPHRDTITWNSMINAYLQNGLLVEALQMLK 156

Query: 119 EMYLCGFVLKAELLAGIISLCSQIGEL--ELGRQIHALVIVDGSFEL--SVFVSTALLDL 174
           + Y  GF+ K ELLA ++S+C +  +L   +GRQIH LV+VDG   +  SVF+STA +D 
Sbjct: 157 DFYFLGFLPKPELLASMVSMCGREMDLGWRIGRQIHGLVVVDGRIRIQHSVFLSTAFVDF 216

Query: 175 YSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTL 234
           Y +C   L+A  VF++M ++NEVSWTA+ISGC ++Q+YD  +  +R MQ EGV P RVTL
Sbjct: 217 YFRCGDSLMARSVFDEMEVKNEVSWTAVISGCANNQDYDVALACYREMQVEGVSPNRVTL 276

Query: 235 TIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTK 294
             +L ACA    ++ GK IHGYA+  GFD  H  S AL+++YCEC ++LH A  IFE + 
Sbjct: 277 IALLAACARPGFVKYGKEIHGYAFRRGFDSCHSFSPALIYLYCECGQSLHLAERIFEGSS 336

Query: 295 VKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG 354
           ++DVV+WSSII  Y++ G+  +A+KLF++MR E  EPN VTLLA++S+CT  S   HG  
Sbjct: 337 LRDVVLWSSIIGSYARRGESDKALKLFNKMRTEETEPNYVTLLAVISACTNLSSFKHGGV 396

Query: 355 VHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGY 414
           +H YI+K G+ F + + NAL+NMY+KCGS+  S +IF EM +RD V+W ++IS YG HGY
Sbjct: 397 IHGYILKFGIGFSIFVCNALINMYAKCGSLDDSRKIFLEMPSRDSVTWNSMISAYGLHGY 456

Query: 415 GEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYA 474
           GE+ALQ F EM+E GV+ DA+T LA+LSACNHAGLV E + LF  V  + +I + IEHYA
Sbjct: 457 GEQALQHFYEMKERGVKLDAVTFLAVLSACNHAGLVTEGQQLFEQVNADCEIPITIEHYA 516

Query: 475 CYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPE 534
           C +DL G+SGK+EDA +++ TMPMKPS RI SSLVS+C++HGRL++AE L+ QLI +EP 
Sbjct: 517 CLIDLHGRSGKLEDALEILRTMPMKPSARIWSSLVSSCKLHGRLDIAESLSSQLIRSEPN 576

Query: 535 NAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           NAA+YTLLSM+ +E G WL  E+V   M+ + L K YGFSRIE
Sbjct: 577 NAASYTLLSMIHAEKGRWLDIEQVRETMKLQRLRKCYGFSRIE 619


>gi|15235810|ref|NP_194836.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|2980759|emb|CAA18186.1| putative protein [Arabidopsis thaliana]
 gi|7270009|emb|CAB79825.1| putative protein [Arabidopsis thaliana]
 gi|332660453|gb|AEE85853.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 613

 Score =  602 bits (1551), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 300/582 (51%), Positives = 420/582 (72%), Gaps = 5/582 (0%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           +VS  FY++ L LYK ++H  G    TAILPSVIKACA+ Q     G QLHC  LK+G+D
Sbjct: 20  LVSDQFYDEALRLYKLKIHSLGTNGFTAILPSVIKACAFQQEPFLLGAQLHCLCLKAGAD 79

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
            D V+SNSLISMYAKFS+  +  ++FDEM +RDT+S+ SIIN   Q+G    ++++ +EM
Sbjct: 80  CDTVVSNSLISMYAKFSRKYAVRKVFDEMLHRDTVSYCSIINSCCQDGLLYEAMKLIKEM 139

Query: 121 YLCGFVLKAELLAGIISLCSQIGEL-ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH 179
           Y  GF+ K+EL+A +++LC+++G   ++ R  HALV+VD   + SV +STAL+D+Y K  
Sbjct: 140 YFYGFIPKSELVASLLALCTRMGSSSKVARMFHALVLVDERMQESVLLSTALVDMYLKFD 199

Query: 180 HWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLL 239
               A  VF+QM ++NEVSWTAMISGC+ +QNY+ G+DLFRAMQRE ++P RVTL  VL 
Sbjct: 200 DHAAAFHVFDQMEVKNEVSWTAMISGCVANQNYEMGVDLFRAMQRENLRPNRVTLLSVLP 259

Query: 240 ACAELRDLRN-GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDV 298
           AC EL    +  K IHG+++  G   D  L+AA M MYC C   +  +R++FE +KV+DV
Sbjct: 260 ACVELNYGSSLVKEIHGFSFRHGCHADERLTAAFMTMYCRCGN-VSLSRVLFETSKVRDV 318

Query: 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCY 358
           V+WSS+I GY+++GD SE M L ++MR E IE NSVTLLAI+S+CT  + LS    VH  
Sbjct: 319 VMWSSMISGYAETGDCSEVMNLLNQMRKEGIEANSVTLLAIVSACTNSTLLSFASTVHSQ 378

Query: 359 IMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEA 418
           I+K G    + +GNAL++MY+KCGS++++ ++F E+  +D VSW+++I+ YG HG+G EA
Sbjct: 379 ILKCGFMSHILLGNALIDMYAKCGSLSAAREVFYELTEKDLVSWSSMINAYGLHGHGSEA 438

Query: 419 LQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVD 478
           L++F  M + G E D +  LAILSACNHAGLV+EA+T+F    K   + + +EHYACY++
Sbjct: 439 LEIFKGMIKGGHEVDDMAFLAILSACNHAGLVEEAQTIFTQAGK-YHMPVTLEHYACYIN 497

Query: 479 LLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA-EMLAHQLIEAEPENAA 537
           LLG+ GKI+DA +V   MPMKPS RI SSL+SAC  HGRL+VA +++A++L+++EP+N A
Sbjct: 498 LLGRFGKIDDAFEVTINMPMKPSARIWSSLLSACETHGRLDVAGKIIANELMKSEPDNPA 557

Query: 538 NYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIENE 579
           NY LLS + +ESGN+  AEEV RVM+ + L+K YGFS+IE E
Sbjct: 558 NYVLLSKIHTESGNYHAAEEVRRVMQRRKLNKCYGFSKIEPE 599


>gi|223635626|sp|O65543.2|PP343_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g31070, mitochondrial; Flags: Precursor
          Length = 624

 Score =  601 bits (1549), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 300/582 (51%), Positives = 420/582 (72%), Gaps = 5/582 (0%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           +VS  FY++ L LYK ++H  G    TAILPSVIKACA+ Q     G QLHC  LK+G+D
Sbjct: 31  LVSDQFYDEALRLYKLKIHSLGTNGFTAILPSVIKACAFQQEPFLLGAQLHCLCLKAGAD 90

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
            D V+SNSLISMYAKFS+  +  ++FDEM +RDT+S+ SIIN   Q+G    ++++ +EM
Sbjct: 91  CDTVVSNSLISMYAKFSRKYAVRKVFDEMLHRDTVSYCSIINSCCQDGLLYEAMKLIKEM 150

Query: 121 YLCGFVLKAELLAGIISLCSQIGEL-ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH 179
           Y  GF+ K+EL+A +++LC+++G   ++ R  HALV+VD   + SV +STAL+D+Y K  
Sbjct: 151 YFYGFIPKSELVASLLALCTRMGSSSKVARMFHALVLVDERMQESVLLSTALVDMYLKFD 210

Query: 180 HWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLL 239
               A  VF+QM ++NEVSWTAMISGC+ +QNY+ G+DLFRAMQRE ++P RVTL  VL 
Sbjct: 211 DHAAAFHVFDQMEVKNEVSWTAMISGCVANQNYEMGVDLFRAMQRENLRPNRVTLLSVLP 270

Query: 240 ACAELRDLRN-GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDV 298
           AC EL    +  K IHG+++  G   D  L+AA M MYC C   +  +R++FE +KV+DV
Sbjct: 271 ACVELNYGSSLVKEIHGFSFRHGCHADERLTAAFMTMYCRCGN-VSLSRVLFETSKVRDV 329

Query: 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCY 358
           V+WSS+I GY+++GD SE M L ++MR E IE NSVTLLAI+S+CT  + LS    VH  
Sbjct: 330 VMWSSMISGYAETGDCSEVMNLLNQMRKEGIEANSVTLLAIVSACTNSTLLSFASTVHSQ 389

Query: 359 IMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEA 418
           I+K G    + +GNAL++MY+KCGS++++ ++F E+  +D VSW+++I+ YG HG+G EA
Sbjct: 390 ILKCGFMSHILLGNALIDMYAKCGSLSAAREVFYELTEKDLVSWSSMINAYGLHGHGSEA 449

Query: 419 LQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVD 478
           L++F  M + G E D +  LAILSACNHAGLV+EA+T+F    K   + + +EHYACY++
Sbjct: 450 LEIFKGMIKGGHEVDDMAFLAILSACNHAGLVEEAQTIFTQAGK-YHMPVTLEHYACYIN 508

Query: 479 LLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA-EMLAHQLIEAEPENAA 537
           LLG+ GKI+DA +V   MPMKPS RI SSL+SAC  HGRL+VA +++A++L+++EP+N A
Sbjct: 509 LLGRFGKIDDAFEVTINMPMKPSARIWSSLLSACETHGRLDVAGKIIANELMKSEPDNPA 568

Query: 538 NYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIENE 579
           NY LLS + +ESGN+  AEEV RVM+ + L+K YGFS+IE E
Sbjct: 569 NYVLLSKIHTESGNYHAAEEVRRVMQRRKLNKCYGFSKIEPE 610


>gi|297798862|ref|XP_002867315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313151|gb|EFH43574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  598 bits (1543), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 297/580 (51%), Positives = 417/580 (71%), Gaps = 5/580 (0%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           +VS   +++ L LYK  +HP G    TAILPSVIKAC++ Q     G QLHC   KSG+D
Sbjct: 20  LVSGQLHDEALRLYKLNIHPLGTNGFTAILPSVIKACSFQQEPFLLGAQLHCLCFKSGAD 79

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
            D V+SNSLISMYAK S+  +A ++FDEM  RDT+S+ SI+NC+ Q+G    ++++ +EM
Sbjct: 80  RDTVVSNSLISMYAKLSRAYAARKVFDEMLQRDTVSYCSIVNCYCQDGLLSEAMKLLKEM 139

Query: 121 YLCGFVLKAELLAGIISLCSQIGEL-ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH 179
           Y  GFV K+EL+A +++LC+++G   ++ R +HALV+VD   + SV +STALLD+Y K  
Sbjct: 140 YFYGFVPKSELVASLLALCTRMGSSSKVARMLHALVLVDERIQESVLLSTALLDMYLKFD 199

Query: 180 HWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLL 239
               A  VF+QM ++NEVSWTAMISGC+ + NY+ GID FRAMQRE ++P RVTL  VL 
Sbjct: 200 DPAAAFHVFDQMELKNEVSWTAMISGCVANYNYEVGIDFFRAMQRENLRPNRVTLLSVLP 259

Query: 240 ACAEL-RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDV 298
           AC EL   LR  K IHG+++  GF  D  L AA M MYC C  ++  +R++FE +KV+DV
Sbjct: 260 ACVELGYGLRLVKEIHGFSFRHGFHSDDRLIAAFMTMYCRCG-SVSLSRLLFETSKVRDV 318

Query: 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCY 358
           V+WSS+I GY+++GD SEAM L S+MR E  EPNSVTLLA++S+CT  + L     VH  
Sbjct: 319 VMWSSMISGYAENGDCSEAMNLLSQMRKEGSEPNSVTLLAVVSACTHSASLKIASTVHSQ 378

Query: 359 IMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEA 418
           I+K G    + + NAL++MY+KCGS+ ++ ++F E+  +D VSW+++I+ YG HG+G EA
Sbjct: 379 ILKCGFMSHILLSNALIDMYAKCGSLPAAREVFYELNEKDLVSWSSMINAYGLHGHGSEA 438

Query: 419 LQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVD 478
           L++F  M ++G E D +  LA+LSACNHAGLV+EA+T+F    K   + + +EHY+CY++
Sbjct: 439 LEIFKGMIKAGHEVDGMAFLAVLSACNHAGLVEEAQTIFTQAGK-YHMPVTLEHYSCYIN 497

Query: 479 LLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA-EMLAHQLIEAEPENAA 537
           LLG+ GKI+DA +V   MPMKPS RI SSL+SAC  HGRL+VA +++A++L+++EP+N A
Sbjct: 498 LLGRFGKIDDAFEVTINMPMKPSARIWSSLLSACETHGRLDVACKIIANELMKSEPDNPA 557

Query: 538 NYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           NY LLS + +ESGN   AEEVW+ M+ + L+K YGFS+IE
Sbjct: 558 NYVLLSKIHTESGNCDAAEEVWKFMQRRQLNKCYGFSKIE 597


>gi|124359403|gb|ABN05862.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 460

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 218/424 (51%), Positives = 298/424 (70%), Gaps = 8/424 (1%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTA--ILPSVIKACAYAQTHQHFGLQLHCTALKSG 58
           +VS   Y QTL  + Q LH S  + N+   +LPSVIKAC++   H  FG QLHC A  +G
Sbjct: 39  LVSMGLYHQTLQFFTQ-LHFSAHHFNSIPFVLPSVIKACSFTHFHA-FGTQLHCLAFITG 96

Query: 59  SDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFR 118
           S  DP++SNS+ISMYAKF   ESA Q+FD MP+RDTI+WNS+IN + QNG  V +L+M +
Sbjct: 97  SYTDPIVSNSIISMYAKFFDIESARQVFDTMPHRDTITWNSMINAYLQNGLLVEALQMLK 156

Query: 119 EMYLCGFVLKAELLAGIISLCSQIGEL--ELGRQIHALVIVDGSFEL--SVFVSTALLDL 174
           + Y  GF+ K ELLA ++S+C +  +L   +GRQIH LV+VDG   +  SVF+STA +D 
Sbjct: 157 DFYFLGFLPKPELLASMVSMCGREMDLGWRIGRQIHGLVVVDGRIRIQHSVFLSTAFVDF 216

Query: 175 YSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTL 234
           Y +C   L+A  VF++M ++NEVSWTA+ISGC ++Q+YD  +  +R MQ EGV P RVTL
Sbjct: 217 YFRCGDSLMARSVFDEMEVKNEVSWTAVISGCANNQDYDVALACYREMQVEGVSPNRVTL 276

Query: 235 TIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTK 294
             +L ACA    ++ GK IHGYA+  GFD  H  S AL+++YCEC ++LH A  IFE + 
Sbjct: 277 IALLAACARPGFVKYGKEIHGYAFRRGFDSCHSFSPALIYLYCECGQSLHLAERIFEGSS 336

Query: 295 VKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG 354
           ++DVV+WSSII  Y++ G+  +A+KLF++MR E  EPN VTLLA++S+CT  S   HG  
Sbjct: 337 LRDVVLWSSIIGSYARRGESDKALKLFNKMRTEETEPNYVTLLAVISACTNLSSFKHGGV 396

Query: 355 VHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGY 414
           +H YI+K G+ F + + NAL+NMY+KCGS+  S +IF EM +RD V+W ++IS YG HGY
Sbjct: 397 IHGYILKFGIGFSIFVCNALINMYAKCGSLDDSRKIFLEMPSRDSVTWNSMISAYGLHGY 456

Query: 415 GEEA 418
           GE+A
Sbjct: 457 GEQA 460



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 120/431 (27%), Positives = 216/431 (50%), Gaps = 16/431 (3%)

Query: 101 INCFTQNGFYVRSLEMFREMYLCG--FVLKAELLAGIISLCSQIGELELGRQIHALVIVD 158
           I      G Y ++L+ F +++     F     +L  +I  CS       G Q+H L  + 
Sbjct: 36  IKTLVSMGLYHQTLQFFTQLHFSAHHFNSIPFVLPSVIKACSFTHFHAFGTQLHCLAFIT 95

Query: 159 GSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDL 218
           GS+   + VS +++ +Y+K      A +VF+ M  R+ ++W +MI+  + +      + +
Sbjct: 96  GSYTDPI-VSNSIISMYAKFFDIESARQVFDTMPHRDTITWNSMINAYLQNGLLVEALQM 154

Query: 219 FRAMQREGVKPTRVTLTIVLLACAELRDL--RNGKAIHGYAYCCGFDFDHH---LSAALM 273
            +     G  P    L  ++  C    DL  R G+ IHG     G     H   LS A +
Sbjct: 155 LKDFYFLGFLPKPELLASMVSMCGREMDLGWRIGRQIHGLVVVDGRIRIQHSVFLSTAFV 214

Query: 274 HMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNS 333
             Y  C ++L  AR +F+  +VK+ V W+++I G + + D   A+  +  M++E + PN 
Sbjct: 215 DFYFRCGDSLM-ARSVFDEMEVKNEVSWTAVISGCANNQDYDVALACYREMQVEGVSPNR 273

Query: 334 VTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCG-SITSSHQIFN 392
           VTL+A+L++C R  F+ +G  +H Y  + G +   S   AL+ +Y +CG S+  + +IF 
Sbjct: 274 VTLIALLAACARPGFVKYGKEIHGYAFRRGFDSCHSFSPALIYLYCECGQSLHLAERIFE 333

Query: 393 EMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKE 452
             + RD V W+++I  Y   G  ++AL+LF +M+    EP+ +T+LA++SAC +    K 
Sbjct: 334 GSSLRDVVLWSSIIGSYARRGESDKALKLFNKMRTEETEPNYVTLLAVISACTNLSSFKH 393

Query: 453 AETLFNNVMKEKKIALAIEHYAC--YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVS 510
              +   ++   K  +    + C   +++  K G ++D+ K+   MP + S    +S++S
Sbjct: 394 GGVIHGYIL---KFGIGFSIFVCNALINMYAKCGSLDDSRKIFLEMPSRDSV-TWNSMIS 449

Query: 511 ACRIHGRLEVA 521
           A  +HG  E A
Sbjct: 450 AYGLHGYGEQA 460


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/576 (37%), Positives = 347/576 (60%), Gaps = 6/576 (1%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V   F+ + L LY Q +  +G+  +  +  SVIKAC  +Q+    G ++H   +  G ++
Sbjct: 96  VKNGFWNKALRLYYQ-MQRTGINPDKLVFLSVIKACG-SQSDLQAGRKVHEDIIARGFES 153

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D ++  +L SMY K    E+A Q+FD MP RD +SWN+II  ++QNG    +L +F EM 
Sbjct: 154 DVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQ 213

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
           + G    +  L  ++ +C+ +  LE G+QIH   I  G  E  V V   L+++Y+KC + 
Sbjct: 214 VNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSG-IESDVLVVNGLVNMYAKCGNV 272

Query: 182 LIALRVFEQMVIRNEVSWTAMISG-CIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
             A ++FE+M IR+  SW A+I G  ++SQ+++  +  F  MQ  G+KP  +T+  VL A
Sbjct: 273 NTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEA-LAFFNRMQVRGIKPNSITMVSVLPA 331

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
           CA L  L  G+ IHGYA   GF+ +  +  AL++MY +C   ++ A  +FER   K+VV 
Sbjct: 332 CAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGN-VNSAYKLFERMPKKNVVA 390

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           W++II GYSQ G   EA+ LF  M+ + I+P+S  ++++L +C     L  G  +H Y +
Sbjct: 391 WNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTI 450

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
           ++G   +V +G  L+++Y+KCG++ ++ ++F  M  +D VSWTT+I  YG HG+GE+AL 
Sbjct: 451 RSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALA 510

Query: 421 LFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLL 480
           LF +MQE+G + D I   AIL+AC+HAGLV +    F  +  +  +A  +EHYAC VDLL
Sbjct: 511 LFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLL 570

Query: 481 GKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYT 540
           G++G +++A  ++  M ++P   +  +L+ ACRIH  +E+ E  A  L E +P+NA  Y 
Sbjct: 571 GRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYV 630

Query: 541 LLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
           LLS + +E+  W    ++ ++M+ KG+ K  G S +
Sbjct: 631 LLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVV 666



 Score =  273 bits (699), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 149/462 (32%), Positives = 253/462 (54%), Gaps = 11/462 (2%)

Query: 93  DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIH 152
           + + W   I  + +NGF+ ++L ++ +M   G      +   +I  C    +L+ GR++H
Sbjct: 84  NAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVH 143

Query: 153 ALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNY 212
             +I  G FE  V V TAL  +Y+KC     A +VF++M  R+ VSW A+I+G   +   
Sbjct: 144 EDIIARG-FESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQP 202

Query: 213 DTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAAL 272
              + LF  MQ  G+KP   TL  V+  CA L  L  GK IH YA   G + D  +   L
Sbjct: 203 YEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGL 262

Query: 273 MHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPN 332
           ++MY +C   ++ A  +FER  ++DV  W++II GYS +    EA+  F+RM++  I+PN
Sbjct: 263 VNMYAKCGN-VNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPN 321

Query: 333 SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFN 392
           S+T++++L +C     L  G  +H Y +++G   +  +GNAL+NMY+KCG++ S++++F 
Sbjct: 322 SITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFE 381

Query: 393 EMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKE 452
            M  ++ V+W  +ISGY  HG+  EAL LF+EMQ  G++PD+  ++++L AC H   +++
Sbjct: 382 RMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQ 441

Query: 453 AETLFNNVMK---EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLV 509
            + +    ++   E  + +        VD+  K G +  A K+   MP +      ++++
Sbjct: 442 GKQIHGYTIRSGFESNVVVG----TGLVDIYAKCGNVNTAQKLFERMPEQDVVS-WTTMI 496

Query: 510 SACRIHGRLEVAEMLAHQLIEAEPE-NAANYTLLSMVCSESG 550
            A  IHG  E A  L  ++ E   + +   +T +   CS +G
Sbjct: 497 LAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAG 538



 Score =  212 bits (539), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 111/330 (33%), Positives = 184/330 (55%), Gaps = 4/330 (1%)

Query: 188 FEQMVIRNE-VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           F Q  IRN  V W   I G + +  ++  + L+  MQR G+ P ++    V+ AC    D
Sbjct: 76  FTQTDIRNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSD 135

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L+ G+ +H      GF+ D  +  AL  MY +C  +L  AR +F+R   +DVV W++II 
Sbjct: 136 LQAGRKVHEDIIARGFESDVIVGTALASMYTKCG-SLENARQVFDRMPKRDVVSWNAIIA 194

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           GYSQ+G   EA+ LFS M++  I+PNS TL++++  C     L  G  +HCY +++G+  
Sbjct: 195 GYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIES 254

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           DV + N L+NMY+KCG++ ++H++F  M  RD  SW  +I GY  +    EAL  F  MQ
Sbjct: 255 DVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQ 314

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
             G++P++IT++++L AC H   +++ + +    ++    +  +   A  V++  K G +
Sbjct: 315 VRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNA-LVNMYAKCGNV 373

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHG 516
             A K+   MP K +    ++++S    HG
Sbjct: 374 NSAYKLFERMP-KKNVVAWNAIISGYSQHG 402


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/577 (37%), Positives = 356/577 (61%), Gaps = 5/577 (0%)

Query: 3   SKHF-YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           +K+F + + L ++ + LH   L  +    PSV+KAC+       +G  +H   +KSG   
Sbjct: 273 TKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACS-GLGRVGYGKMVHTHVIKSGFAM 331

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D V+ +S + MYAK +  E A +LFDEMP RD  SWN++I+C+ Q+G   ++LE+F EM 
Sbjct: 332 DVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMK 391

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
           + GF   +  L  +IS C+++ +LE G++IH + +V   F L  FVS+AL+D+Y KC   
Sbjct: 392 VSGFKPDSVTLTTVISSCARLLDLERGKEIH-MELVRSGFALDGFVSSALVDMYGKCGCL 450

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
            +A  VFEQ+  +N VSW +MI+G     +  + I+LFR M  EG++PT  TL+ +L+AC
Sbjct: 451 EMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMAC 510

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           +   +L+ GK IHGY      + D  ++++L+ +Y +C   +  A  +F+     +VV W
Sbjct: 511 SRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGN-IGSAENVFQNMPKTNVVSW 569

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           + +I GY + G   EA+ +F+ MR   ++P+++T  ++L +C++ + L  G  +H +I++
Sbjct: 570 NVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIE 629

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
           + L  +  +  AL++MY+KCG++  +  IFN++  RDFVSWT++I+ YG HG   EAL+L
Sbjct: 630 SKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKL 689

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
           F +MQ+S  +PD +T LAILSAC+HAGLV E    FN ++ E     A+EHY+C +DLLG
Sbjct: 690 FEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLG 749

Query: 482 KSGKIEDACKVVSTMP-MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYT 540
           + G++ +A +++   P ++    +LS+L SAC +H +L++ E +   LIE +P++ + Y 
Sbjct: 750 RVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEKDPDDPSTYI 809

Query: 541 LLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +LS + +    W    +V   ++  GL K+ G S IE
Sbjct: 810 ILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIE 846



 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 161/521 (30%), Positives = 279/521 (53%), Gaps = 11/521 (2%)

Query: 35  KACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFD--EMPYR 92
           +  A +   +  G  +H   +  G   +  +  SLI++Y      +SA  +F   E P  
Sbjct: 202 RVTAGSALEELLGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPL- 260

Query: 93  DTISWNSIINCFTQNGFYVRSLEMF-REMYLCGFVLKAELLAGIISLCSQIGELELGRQI 151
           D   WN ++   T+N  ++  LE+F R ++       A     ++  CS +G +  G+ +
Sbjct: 261 DITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMV 320

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQN 211
           H  VI  G F + V V ++ + +Y+KC+ +  A+++F++M  R+  SW  +IS       
Sbjct: 321 HTHVIKSG-FAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQ 379

Query: 212 YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAA 271
            +  ++LF  M+  G KP  VTLT V+ +CA L DL  GK IH      GF  D  +S+A
Sbjct: 380 PEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSA 439

Query: 272 LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP 331
           L+ MY +C   L  A+ +FE+ + K+VV W+S+I GYS  GD    ++LF RM  E I P
Sbjct: 440 LVDMYGKCG-CLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRP 498

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIF 391
              TL +IL +C+R   L  G  +H YI++  +  D+ + ++L+++Y KCG+I S+  +F
Sbjct: 499 TLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVF 558

Query: 392 NEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVK 451
             M   + VSW  +ISGY   G   EAL +F +M+++GV+PDAIT  ++L AC+   +++
Sbjct: 559 QNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLE 618

Query: 452 EAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSA 511
           + + + N ++ E K+ +        +D+  K G +++A  + + +P +      +S+++A
Sbjct: 619 KGKEIHNFII-ESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVS-WTSMIAA 676

Query: 512 CRIHGR-LEVAEMLAH-QLIEAEPENAANYTLLSMVCSESG 550
              HG+  E  ++    Q  +A+P+      +LS  CS +G
Sbjct: 677 YGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILS-ACSHAG 716


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/577 (37%), Positives = 356/577 (61%), Gaps = 5/577 (0%)

Query: 3   SKHF-YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           +K+F + + L ++ + LH   L  +    PSV+KAC+       +G  +H   +KSG   
Sbjct: 81  TKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACS-GLGRVGYGKMVHTHVIKSGFAM 139

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D V+ +S + MYAK +  E A +LFDEMP RD  SWN++I+C+ Q+G   ++LE+F EM 
Sbjct: 140 DVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMK 199

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
           + GF   +  L  +IS C+++ +LE G++IH + +V   F L  FVS+AL+D+Y KC   
Sbjct: 200 VSGFKPDSVTLTTVISSCARLLDLERGKEIH-MELVRSGFALDGFVSSALVDMYGKCGCL 258

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
            +A  VFEQ+  +N VSW +MI+G     +  + I+LFR M  EG++PT  TL+ +L+AC
Sbjct: 259 EMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMAC 318

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           +   +L+ GK IHGY      + D  ++++L+ +Y +C   +  A  +F+     +VV W
Sbjct: 319 SRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGN-IGSAENVFQNMPKTNVVSW 377

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           + +I GY + G   EA+ +F+ MR   ++P+++T  ++L +C++ + L  G  +H +I++
Sbjct: 378 NVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIE 437

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
           + L  +  +  AL++MY+KCG++  +  IFN++  RDFVSWT++I+ YG HG   EAL+L
Sbjct: 438 SKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKL 497

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
           F +MQ+S  +PD +T LAILSAC+HAGLV E    FN ++ E     A+EHY+C +DLLG
Sbjct: 498 FEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLG 557

Query: 482 KSGKIEDACKVVSTMP-MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYT 540
           + G++ +A +++   P ++    +LS+L SAC +H +L++ E +   LIE +P++ + Y 
Sbjct: 558 RVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEKDPDDPSTYI 617

Query: 541 LLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +LS + +    W    +V   ++  GL K+ G S IE
Sbjct: 618 ILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIE 654



 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 165/530 (31%), Positives = 286/530 (53%), Gaps = 12/530 (2%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           +T  L S++K C  ++  +  G  +H   +  G   +  +  SLI++Y      +SA  +
Sbjct: 2   DTTKLLSLLKTCIDSKYLKQ-GKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLV 60

Query: 86  FD--EMPYRDTISWNSIINCFTQNGFYVRSLEMF-REMYLCGFVLKAELLAGIISLCSQI 142
           F   E P  D   WN ++   T+N  ++  LE+F R ++       A     ++  CS +
Sbjct: 61  FQTIENPL-DITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGL 119

Query: 143 GELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAM 202
           G +  G+ +H  VI  G F + V V ++ + +Y+KC+ +  A+++F++M  R+  SW  +
Sbjct: 120 GRVGYGKMVHTHVIKSG-FAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNV 178

Query: 203 ISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGF 262
           IS        +  ++LF  M+  G KP  VTLT V+ +CA L DL  GK IH      GF
Sbjct: 179 ISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGF 238

Query: 263 DFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFS 322
             D  +S+AL+ MY +C   L  A+ +FE+ + K+VV W+S+I GYS  GD    ++LF 
Sbjct: 239 ALDGFVSSALVDMYGKCG-CLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFR 297

Query: 323 RMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCG 382
           RM  E I P   TL +IL +C+R   L  G  +H YI++  +  D+ + ++L+++Y KCG
Sbjct: 298 RMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCG 357

Query: 383 SITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILS 442
           +I S+  +F  M   + VSW  +ISGY   G   EAL +F +M+++GV+PDAIT  ++L 
Sbjct: 358 NIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLP 417

Query: 443 ACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPST 502
           AC+   ++++ + + N ++ E K+ +        +D+  K G +++A  + + +P +   
Sbjct: 418 ACSQLAVLEKGKEIHNFII-ESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFV 476

Query: 503 RILSSLVSACRIHGR-LEVAEMLAH-QLIEAEPENAANYTLLSMVCSESG 550
              +S+++A   HG+  E  ++    Q  +A+P+      +LS  CS +G
Sbjct: 477 S-WTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILS-ACSHAG 524


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/548 (36%), Positives = 325/548 (59%), Gaps = 3/548 (0%)

Query: 31  PSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMP 90
           PSV+KAC      Q  G ++H   LK G D D  + N+L+ MY + +  E A  +FD+M 
Sbjct: 98  PSVLKACGQVSWTQ-LGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMM 156

Query: 91  YRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQ 150
            RD +SW+++I   ++N  +  +LE+ REM           +  +++L +    + +G+ 
Sbjct: 157 ERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKA 216

Query: 151 IHALVIVDGSFE-LSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
           +HA VI + + E + V  +TALLD+Y+KC H  +A ++F  +  +  VSWTAMI+GCI S
Sbjct: 217 MHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRS 276

Query: 210 QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS 269
              + G  LF  MQ E + P  +T+  +++ C     L+ GK +H Y    GF     L+
Sbjct: 277 NRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALA 336

Query: 270 AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
            AL+ MY +C++ +  AR +F+ T+ +DV+IW++++  Y+Q+  + +A  LF +MR   +
Sbjct: 337 TALVDMYGKCSD-IRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGV 395

Query: 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
            P  VT++++LS C     L  G  VH YI K  +  D  +  AL++MY+KCG I ++ +
Sbjct: 396 RPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGR 455

Query: 390 IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL 449
           +F E  +RD   W  +I+G+  HGYGEEAL +F EM+  GV+P+ IT + +L AC+HAGL
Sbjct: 456 LFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGL 515

Query: 450 VKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLV 509
           V E + LF  ++    +   IEHY C VDLLG++G +++A +++ +MP+KP+T +  +LV
Sbjct: 516 VTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALV 575

Query: 510 SACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSK 569
           +ACR+H   ++ E+ A QL+E EPEN     L+S + + +  W  A  V + M+  G+ K
Sbjct: 576 AACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKK 635

Query: 570 SYGFSRIE 577
             G S IE
Sbjct: 636 EPGHSVIE 643


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/571 (36%), Positives = 333/571 (58%), Gaps = 4/571 (0%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           Y ++++L+KQ L   G+  N+    S++K C  A      G Q+H    K G ++   + 
Sbjct: 232 YGESINLFKQMLEL-GIKPNSYTFSSILK-CFAAVARVEEGRQVHGLICKLGFNSYNTVV 289

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           NSLIS Y    K   A +LFDE+  RD ISWNS+I+ + +NG   R +E+F +M + G  
Sbjct: 290 NSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVD 349

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
           +    +  +   C+ IG L LG+ +H+  I   + +  V  +  LLD+YSKC     A+R
Sbjct: 350 IDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIR 409

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VFE+M  +  VSWT+MI+G +     D  I LF  M+  GV P    +T +L ACA   +
Sbjct: 410 VFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGN 469

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L++GK +H Y      + +  +S AL  MY +C  ++  A  +F   K KDV+ W+++I 
Sbjct: 470 LKSGKIVHDYIRENNLETNSFVSNALTDMYAKCG-SMKDAHDVFSHMKKKDVISWNTMIG 528

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           GY+++   +EA+ LF+ M+ E  +P+  T+  IL +C   + L  G  +H Y ++ G + 
Sbjct: 529 GYTKNSLPNEALTLFAEMQRES-KPDGTTVACILPACASLAALDKGREIHGYALRNGYSE 587

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           D  + NA+++MY KCG +  +  +F+ +  +D VSWT +I+GYG HGYG EA+  F +M+
Sbjct: 588 DKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMR 647

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
            +G+EPD ++ ++IL AC+H+GL+ E   +FN + KE +I   +EHYAC VDLL ++G +
Sbjct: 648 MTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNL 707

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546
             A K +  MP+KP   I  +L+  CRIH  +++AE +A ++ E EPEN   Y LL+ + 
Sbjct: 708 VKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKVAERIFELEPENTGYYVLLANIY 767

Query: 547 SESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +E+  W   +++ + +  +GL K+ G S IE
Sbjct: 768 AEAEKWEEVQKLRKKIGQRGLKKNPGCSWIE 798



 Score =  215 bits (547), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 158/538 (29%), Positives = 264/538 (49%), Gaps = 23/538 (4%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPY 91
           S+++ CA  ++ +  G ++      SG   D ++   L+ MY K    +    +FD++  
Sbjct: 155 SILQLCAERKSIRD-GRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSE 213

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQI 151
                WN +I+ ++ +G Y  S+ +F++M   G    +   + I+   + +  +E GRQ+
Sbjct: 214 SKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQV 273

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQN 211
           H L+   G F     V  +L+  Y        A ++F+++  R+ +SW +MISG + +  
Sbjct: 274 HGLICKLG-FNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGL 332

Query: 212 YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY-CCGFDFDHHLSA 270
            D GI++F  M   GV     T+  V +ACA +  L  GK +H Y+      D +   + 
Sbjct: 333 DDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNN 392

Query: 271 ALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE 330
            L+ MY +C + L+ A  +FER   K VV W+S+I GY + G    A+KLF  M+   + 
Sbjct: 393 TLLDMYSKCGD-LNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVV 451

Query: 331 PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQI 390
           P+   + +IL++C     L  G  VH YI +  L  +  + NAL +MY+KCGS+  +H +
Sbjct: 452 PDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDV 511

Query: 391 FNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC-NHAGL 449
           F+ M  +D +SW T+I GY  +    EAL LF EMQ    +PD  TV  IL AC + A L
Sbjct: 512 FSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRES-KPDGTTVACILPACASLAAL 570

Query: 450 VKEAE----TLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRIL 505
            K  E     L N   ++K +  A+      VD+  K G +  A  +   +P K      
Sbjct: 571 DKGREIHGYALRNGYSEDKYVTNAV------VDMYVKCGLLVLARSLFDMIPNKDLVS-W 623

Query: 506 SSLVSACRIHGRLEVAEMLAHQ--LIEAEPENAANYTLLSMVCSESGNWLGAEEVWRV 561
           + +++   +HG    A    +Q  +   EP+  +  ++L   CS SG     +E W++
Sbjct: 624 TVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISIL-YACSHSGLL---DEGWKI 677


>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 210/574 (36%), Positives = 339/574 (59%), Gaps = 4/574 (0%)

Query: 5   HFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPV 64
           + Y + L L+++ LH   L  ++   PSV+KAC     +   G  +H   +K+G   D V
Sbjct: 84  YMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYKYV-LGKMIHTCLVKTGLMMDIV 142

Query: 65  ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG 124
           + +SL+ MYAK +  E A  LF+EMP +D   WN++I+C+ Q+G +  +LE F  M   G
Sbjct: 143 VGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKEALEYFGLMRRFG 202

Query: 125 FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
           F   +  +   IS C+++ +L  G +IH  +I  G F L  F+S+AL+D+Y KC H  +A
Sbjct: 203 FEPNSVTITTAISSCARLLDLNRGMEIHEELINSG-FLLDSFISSALVDMYGKCGHLEMA 261

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
           + VFEQM  +  V+W +MISG     +  + I LF+ M  EGVKPT  TL+ +++ C+  
Sbjct: 262 IEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRS 321

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
             L  GK +HGY        D  ++++LM +Y +C + +  A  IF+      VV W+ +
Sbjct: 322 ARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKCGK-VELAENIFKLIPKSKVVSWNVM 380

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
           I GY   G L EA+ LFS MR   +EP+++T  ++L++C++ + L  G  +H  I++  L
Sbjct: 381 ISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQLAALEKGEEIHNLIIEKKL 440

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
           + +  +  AL++MY+KCG++  +  +F  +  RD VSWT++I+ YG HG    AL+LF E
Sbjct: 441 DNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGQAYVALELFAE 500

Query: 425 MQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSG 484
           M +S ++PD +T LAILSAC HAGLV E    FN ++    I   +EHY+C +DLLG++G
Sbjct: 501 MLQSNMKPDRVTFLAILSACGHAGLVDEGCYYFNQMVNVYGIIPRVEHYSCLIDLLGRAG 560

Query: 485 KIEDACKVVSTMP-MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLS 543
           ++ +A +++   P ++    +LS+L SACR+H  +++   +A  LI+ +P++++ Y LLS
Sbjct: 561 RLHEAYEILQQNPEIRDDVELLSTLFSACRLHRNIDLGAEIARTLIDKDPDDSSTYILLS 620

Query: 544 MVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            + + +  W     V   M+  GL K+ G S IE
Sbjct: 621 NMYASAHKWDEVRVVRSKMKELGLKKNPGCSWIE 654



 Score =  242 bits (617), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 162/530 (30%), Positives = 280/530 (52%), Gaps = 12/530 (2%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           +T  L  +++AC  +++ +  G  +H   +  G   D  +  +LI++Y      + A  +
Sbjct: 2   DTRKLLPLLRACMNSKSLKQ-GKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCV 60

Query: 86  FDEMPYRDTIS-WNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE--LLAGIISLCSQI 142
           FD M     IS WN ++  +T+N  YV +LE+F ++    + LK +      ++  C  +
Sbjct: 61  FDNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPY-LKPDSYTYPSVLKACGGL 119

Query: 143 GELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAM 202
            +  LG+ IH  ++  G   + + V ++L+ +Y+KC+ +  A+ +F +M  ++   W  +
Sbjct: 120 YKYVLGKMIHTCLVKTG-LMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTV 178

Query: 203 ISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGF 262
           IS    S N+   ++ F  M+R G +P  VT+T  + +CA L DL  G  IH      GF
Sbjct: 179 ISCYYQSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGF 238

Query: 263 DFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFS 322
             D  +S+AL+ MY +C   L  A  +FE+   K VV W+S+I GY   GD    ++LF 
Sbjct: 239 LLDSFISSALVDMYGKCGH-LEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFK 297

Query: 323 RMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCG 382
           RM  E ++P   TL +++  C+R + L  G  VH Y ++  +  DV I ++LM++Y KCG
Sbjct: 298 RMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKCG 357

Query: 383 SITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILS 442
            +  +  IF  +     VSW  +ISGY   G   EAL LF EM++S VEPDAIT  ++L+
Sbjct: 358 KVELAENIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLT 417

Query: 443 ACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPST 502
           AC+    +++ E + +N++ EKK+          +D+  K G +++A  V   +P K   
Sbjct: 418 ACSQLAALEKGEEI-HNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLP-KRDL 475

Query: 503 RILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLSMVCSESG 550
              +S+++A   HG+  VA  L  +++++  +P+      +LS  C  +G
Sbjct: 476 VSWTSMITAYGSHGQAYVALELFAEMLQSNMKPDRVTFLAILS-ACGHAG 524



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 164/333 (49%), Gaps = 16/333 (4%)

Query: 234 LTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERT 293
           L  +L AC   + L+ GK IH      G   D  L   L+++Y  C    H A+ +F+  
Sbjct: 6   LLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDH-AKCVFDNM 64

Query: 294 KVK-DVVIWSSIIRGYSQSGDLSEAMKLFSR-MRLERIEPNSVTLLAILSSCTRQSFLSH 351
           +   ++ +W+ ++ GY+++    EA++LF + +    ++P+S T  ++L +C        
Sbjct: 65  ENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYKYVL 124

Query: 352 GLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGF 411
           G  +H  ++K GL  D+ +G++L+ MY+KC +   +  +FNEM  +D   W T+IS Y  
Sbjct: 125 GKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQ 184

Query: 412 HGYGEEALQLFLEMQESGVEPDAITVLAILSACN-----HAGLVKEAETLFNNVMKEKKI 466
            G  +EAL+ F  M+  G EP+++T+   +S+C      + G+    E + +  + +  I
Sbjct: 185 SGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFI 244

Query: 467 ALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG-RLEVAEMLA 525
           + A+      VD+ GK G +E A +V   MP K +    +S++S   + G  +   ++  
Sbjct: 245 SSAL------VDMYGKCGHLEMAIEVFEQMP-KKTVVAWNSMISGYGLKGDSISCIQLFK 297

Query: 526 HQLIEAEPENAANYTLLSMVCSESGNWLGAEEV 558
               E         + L MVCS S   L  + V
Sbjct: 298 RMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFV 330


>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/575 (36%), Positives = 338/575 (58%), Gaps = 6/575 (1%)

Query: 5   HFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQH-FGLQLHCTALKSGSDADP 63
           + Y + L L+++ LH   L  ++   PSV KAC     H++  G  +H   +K+G   D 
Sbjct: 84  YMYVEALELFEKLLHYPYLKPDSYTYPSVFKACG--GLHRYVLGKMIHTCLIKTGLMMDI 141

Query: 64  VISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC 123
           V+ +SL+ MY K +  E A  LF+EMP +D   WN++I+C+ Q+G +  +LE F  M   
Sbjct: 142 VVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKDALEYFGLMRRF 201

Query: 124 GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
           GF   +  +   IS C+++ +L  G +IH  +I  G F L  F+S+AL+D+Y KC H  +
Sbjct: 202 GFEPNSVTITTAISSCARLLDLNRGMEIHEELINSG-FLLDSFISSALVDMYGKCGHLEM 260

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
           A+ +FEQM  +  V+W +MISG     +  + I LF+ M  EGVKPT  TL+ +++ C+ 
Sbjct: 261 AIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIMVCSR 320

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
              L  GK +HGY        D  ++++LM +Y +C + +  A  IF+      VV W+ 
Sbjct: 321 SARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFKCGK-VELAEKIFKLIPKSKVVSWNV 379

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           +I GY   G L EA+ LFS MR   +E +++T  ++L++C++ + L  G  +H  I++  
Sbjct: 380 MISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVLTACSQLAALEKGKEIHNLIIEKK 439

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
           L+ +  +  AL++MY+KCG++  +  +F  +  RD VSWT++I+ YG HG+   AL+LF 
Sbjct: 440 LDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGHAYGALELFA 499

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS 483
           EM +S V+PD +  LAILSAC HAGLV E    FN ++    I   +EHY+C +DLLG++
Sbjct: 500 EMLQSNVKPDRVAFLAILSACGHAGLVDEGCYYFNQMINVYGIIPRVEHYSCLIDLLGRA 559

Query: 484 GKIEDACKVVSTMP-MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLL 542
           G++ +A +++   P ++    +LS+L SACR+H  +++   +A  LI+ +P++++ Y LL
Sbjct: 560 GRLHEAYEILQQNPEIRDDVELLSTLFSACRLHRNIDLGAEIARTLIDKDPDDSSTYILL 619

Query: 543 SMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           S + + +  W     V   M+  GL K+ G S IE
Sbjct: 620 SNMYASAHKWDEVRVVRSKMKELGLKKNPGCSWIE 654



 Score =  237 bits (604), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 163/532 (30%), Positives = 277/532 (52%), Gaps = 16/532 (3%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           +T  L  +++AC  +++ +  G  +H   +  G   D  +  +LI+ Y      + A  +
Sbjct: 2   DTRKLLPLLRACMNSKSLKQ-GKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCV 60

Query: 86  FDEMPYRDTIS-WNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE--LLAGIISLCSQI 142
           FD M     IS WN ++  +T+N  YV +LE+F ++    + LK +      +   C  +
Sbjct: 61  FDNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPY-LKPDSYTYPSVFKACGGL 119

Query: 143 GELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAM 202
               LG+ IH  +I  G   + + V ++L+ +Y KC+ +  A+ +F +M  ++   W  +
Sbjct: 120 HRYVLGKMIHTCLIKTG-LMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTV 178

Query: 203 ISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGF 262
           IS    S N+   ++ F  M+R G +P  VT+T  + +CA L DL  G  IH      GF
Sbjct: 179 ISCYYQSGNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGF 238

Query: 263 DFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFS 322
             D  +S+AL+ MY +C   L  A  IFE+   K VV W+S+I GY   GD+   ++LF 
Sbjct: 239 LLDSFISSALVDMYGKCGH-LEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFK 297

Query: 323 RMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCG 382
           RM  E ++P   TL +++  C+R + L  G  VH Y ++  +  DV + ++LM++Y KCG
Sbjct: 298 RMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFKCG 357

Query: 383 SITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILS 442
            +  + +IF  +     VSW  +ISGY   G   EAL LF EM++S VE DAIT  ++L+
Sbjct: 358 KVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVLT 417

Query: 443 ACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPS- 501
           AC+    +++ + + +N++ EKK+          +D+  K G +++A  V   +P +   
Sbjct: 418 ACSQLAALEKGKEI-HNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLV 476

Query: 502 --TRILSSLVSACRIHGRLEV-AEMLAHQLIEAEPENAANYTLLSMVCSESG 550
             T ++++  S    +G LE+ AEML   +   +P+  A   +LS  C  +G
Sbjct: 477 SWTSMITAYGSHGHAYGALELFAEMLQSNV---KPDRVAFLAILS-ACGHAG 524



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 161/333 (48%), Gaps = 16/333 (4%)

Query: 234 LTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERT 293
           L  +L AC   + L+ GK IH      G   D  L   L++ Y  C    H A+ +F+  
Sbjct: 6   LLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDH-AKCVFDNM 64

Query: 294 KVK-DVVIWSSIIRGYSQSGDLSEAMKLFSR-MRLERIEPNSVTLLAILSSCTRQSFLSH 351
           +   ++ +W+ ++ GY+++    EA++LF + +    ++P+S T  ++  +C        
Sbjct: 65  ENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHRYVL 124

Query: 352 GLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGF 411
           G  +H  ++K GL  D+ +G++L+ MY KC +   +  +FNEM  +D   W T+IS Y  
Sbjct: 125 GKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQ 184

Query: 412 HGYGEEALQLFLEMQESGVEPDAITVLAILSACN-----HAGLVKEAETLFNNVMKEKKI 466
            G  ++AL+ F  M+  G EP+++T+   +S+C      + G+    E + +  + +  I
Sbjct: 185 SGNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFI 244

Query: 467 ALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGR-LEVAEMLA 525
           + A+      VD+ GK G +E A ++   MP K +    +S++S   + G  +   ++  
Sbjct: 245 SSAL------VDMYGKCGHLEMAIEIFEQMP-KKTVVAWNSMISGYGLKGDIISCIQLFK 297

Query: 526 HQLIEAEPENAANYTLLSMVCSESGNWLGAEEV 558
               E         + L MVCS S   L  + V
Sbjct: 298 RMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFV 330


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/572 (35%), Positives = 331/572 (57%), Gaps = 5/572 (0%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           +  ++ L+K+ +  SG+  ++     V K+ +  ++  H G QLH   LKSG      + 
Sbjct: 25  FSGSIGLFKK-MMSSGVEMDSYTFSCVSKSFSSLRS-VHGGEQLHGFILKSGFGERNSVG 82

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           NSL++ Y K  + +SA ++FDEM  RD ISWNSIIN +  NG   + L +F +M + G  
Sbjct: 83  NSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIE 142

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
           +    +  + + C+    + LGR +H+ + V   F         LLD+YSKC     A  
Sbjct: 143 IDLATIVSVFAGCADSRLISLGRAVHS-IGVKACFSREDRFCNTLLDMYSKCGDLDSAKA 201

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VF +M  R+ VS+T+MI+G          + LF  M+ EG+ P   T+T VL  CA  R 
Sbjct: 202 VFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRL 261

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L  GK +H +       FD  +S ALM MY +C  ++  A ++F   +VKD++ W++II 
Sbjct: 262 LDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCG-SMQEAELVFSEMRVKDIISWNTIIG 320

Query: 307 GYSQSGDLSEAMKLFSRMRLE-RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
           GYS++   +EA+ LF+ +  E R  P+  T+  +L +C   S    G  +H YIM+ G  
Sbjct: 321 GYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYF 380

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            D  + N+L++MY+KCG++  +H +F+++A++D VSWT +I+GYG HG+G+EA+ LF +M
Sbjct: 381 SDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQM 440

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
           +++G+E D I+ +++L AC+H+GLV E    FN +  E KI   +EHYAC VD+L ++G 
Sbjct: 441 RQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGD 500

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV 545
           +  A + +  MP+ P   I  +L+  CRIH  +++AE +A ++ E EPEN   Y L++ +
Sbjct: 501 LIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANI 560

Query: 546 CSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +E+  W   + + + +  +GL K+ G S IE
Sbjct: 561 YAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIE 592



 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 140/484 (28%), Positives = 240/484 (49%), Gaps = 14/484 (2%)

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL 145
           FDE+     + WN ++N   ++G +  S+ +F++M   G  + +   + +    S +  +
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 146 ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISG 205
             G Q+H  ++  G  E +  V  +L+  Y K      A +VF++M  R+ +SW ++I+G
Sbjct: 61  HGGEQLHGFILKSGFGERNS-VGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIING 119

Query: 206 CIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFD 265
            + +   + G+ +F  M   G++    T+  V   CA+ R +  G+A+H       F  +
Sbjct: 120 YVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRE 179

Query: 266 HHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR 325
                 L+ MY +C + L  A+ +F     + VV ++S+I GY++ G   EA+KLF  M 
Sbjct: 180 DRFCNTLLDMYSKCGD-LDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEME 238

Query: 326 LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSIT 385
            E I P+  T+ A+L+ C R   L  G  VH +I +  L FD+ + NALM+MY+KCGS+ 
Sbjct: 239 EEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQ 298

Query: 386 SSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF-LEMQESGVEPDAITVLAILSAC 444
            +  +F+EM  +D +SW T+I GY  + Y  EAL LF L ++E    PD  TV  +L AC
Sbjct: 299 EAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPAC 358

Query: 445 NHAGLVKEAETLFNNVMKEKKIALAIEHYA-CYVDLLGKSGKIEDACKVVSTMPMKPSTR 503
                  +   +   +M+      +  H A   VD+  K G +  A  +   +  K    
Sbjct: 359 ASLSAFDKGREIHGYIMRNG--YFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVS 416

Query: 504 ILSSLVSACRIHGRLEVAEMLAHQLIEAEPE-NAANYTLLSMVCSESGNWLGAEEVWR-- 560
             + +++   +HG  + A  L +Q+ +A  E +  ++  L   CS SG     +E WR  
Sbjct: 417 -WTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGL---VDEGWRFF 472

Query: 561 -VMR 563
            +MR
Sbjct: 473 NIMR 476


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/572 (35%), Positives = 331/572 (57%), Gaps = 5/572 (0%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           +  ++ L+K+ +  SG+  ++     V K+ +  ++  H G QLH   LKSG      + 
Sbjct: 176 FSGSIGLFKK-MMSSGVEMDSYTFSCVSKSFSSLRS-VHGGEQLHGFILKSGFGERNSVG 233

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           NSL++ Y K  + +SA ++FDEM  RD ISWNSIIN +  NG   + L +F +M + G  
Sbjct: 234 NSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIE 293

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
           +    +  + + C+    + LGR +H+ + V   F         LLD+YSKC     A  
Sbjct: 294 IDLATIVSVFAGCADSRLISLGRAVHS-IGVKACFSREDRFCNTLLDMYSKCGDLDSAKA 352

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VF +M  R+ VS+T+MI+G          + LF  M+ EG+ P   T+T VL  CA  R 
Sbjct: 353 VFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRL 412

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L  GK +H +       FD  +S ALM MY +C  ++  A ++F   +VKD++ W++II 
Sbjct: 413 LDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCG-SMQEAELVFSEMRVKDIISWNTIIG 471

Query: 307 GYSQSGDLSEAMKLFSRMRLE-RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
           GYS++   +EA+ LF+ +  E R  P+  T+  +L +C   S    G  +H YIM+ G  
Sbjct: 472 GYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYF 531

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            D  + N+L++MY+KCG++  +H +F+++A++D VSWT +I+GYG HG+G+EA+ LF +M
Sbjct: 532 SDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQM 591

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
           +++G+E D I+ +++L AC+H+GLV E    FN +  E KI   +EHYAC VD+L ++G 
Sbjct: 592 RQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGD 651

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV 545
           +  A + +  MP+ P   I  +L+  CRIH  +++AE +A ++ E EPEN   Y L++ +
Sbjct: 652 LIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANI 711

Query: 546 CSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +E+  W   + + + +  +GL K+ G S IE
Sbjct: 712 YAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIE 743



 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 152/540 (28%), Positives = 266/540 (49%), Gaps = 15/540 (2%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEM 89
           L SV++ CA +++ +  G ++      +G   D  + + L  MY      + A ++FDE+
Sbjct: 97  LCSVLQLCADSKSLKD-GKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEV 155

Query: 90  PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGR 149
                + WN ++N   ++G +  S+ +F++M   G  + +   + +    S +  +  G 
Sbjct: 156 KIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGE 215

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
           Q+H  ++  G  E +  V  +L+  Y K      A +VF++M  R+ +SW ++I+G + +
Sbjct: 216 QLHGFILKSGFGERNS-VGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSN 274

Query: 210 QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS 269
              + G+ +F  M   G++    T+  V   CA+ R +  G+A+H       F  +    
Sbjct: 275 GLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFC 334

Query: 270 AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
             L+ MY +C + L  A+ +F     + VV ++S+I GY++ G   EA+KLF  M  E I
Sbjct: 335 NTLLDMYSKCGD-LDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGI 393

Query: 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
            P+  T+ A+L+ C R   L  G  VH +I +  L FD+ + NALM+MY+KCGS+  +  
Sbjct: 394 SPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAEL 453

Query: 390 IFNEMAARDFVSWTTLISGYGFHGYGEEALQLF-LEMQESGVEPDAITVLAILSACNHAG 448
           +F+EM  +D +SW T+I GY  + Y  EAL LF L ++E    PD  TV  +L AC    
Sbjct: 454 VFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLS 513

Query: 449 LVKEAETLFNNVMKEKKIALAIEHYA-CYVDLLGKSGKIEDACKVVSTMPMKPSTRILSS 507
              +   +   +M+      +  H A   VD+  K G +  A  +   +  K      + 
Sbjct: 514 AFDKGREIHGYIMRNG--YFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVS-WTV 570

Query: 508 LVSACRIHGRLEVAEMLAHQLIEAEPE-NAANYTLLSMVCSESGNWLGAEEVWR---VMR 563
           +++   +HG  + A  L +Q+ +A  E +  ++  L   CS SG     +E WR   +MR
Sbjct: 571 MIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGL---VDEGWRFFNIMR 627



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 134/248 (54%), Gaps = 13/248 (5%)

Query: 208 DSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
           +S N +  + L     +  + P   TL  VL  CA+ + L++GK +  +    GF  D +
Sbjct: 73  ESGNLENAVKLLCVSGKWDIDPR--TLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSN 130

Query: 268 LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
           L + L  MY  C + L  A  +F+  K++  + W+ ++   ++SGD S ++ LF +M   
Sbjct: 131 LGSKLSLMYTNCGD-LKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSS 189

Query: 328 RIEPNSVTLLAILSSCTRQSFLS-----HGLGVHCYIMKAGLNFDVSIGNALMNMYSKCG 382
            +E +S T      SC  +SF S      G  +H +I+K+G     S+GN+L+  Y K  
Sbjct: 190 GVEMDSYTF-----SCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQ 244

Query: 383 SITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILS 442
            + S+ ++F+EM  RD +SW ++I+GY  +G  E+ L +F++M  SG+E D  T++++ +
Sbjct: 245 RVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFA 304

Query: 443 ACNHAGLV 450
            C  + L+
Sbjct: 305 GCADSRLI 312


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 204/571 (35%), Positives = 330/571 (57%), Gaps = 5/571 (0%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           + +++ L+K+ +   G+  N      V+K C  A        ++H   LK G  ++  + 
Sbjct: 176 FRESVSLFKK-MQKLGVVGNCYTFTCVLK-CFAALGKVKECKRVHGYVLKLGFGSNTAVV 233

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           NSLI+ Y KF   ESA+ LFDE+   D +SWNS+IN    NGF    LE+F +M + G  
Sbjct: 234 NSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVE 293

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
           +    L  ++  C+ IG L LGR +H    V   F   V  S  LLD+YSKC +   A  
Sbjct: 294 VDLTTLVSVLVACANIGNLSLGRALHGFG-VKACFSEEVVFSNTLLDMYSKCGNLNGATE 352

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VF +M     VSWT++I+  +    Y   I LF  MQ +GV+P   T+T ++ ACA    
Sbjct: 353 VFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSS 412

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L  G+ +H Y    G   +  ++ AL++MY +C  ++  AR++F +  VKD+V W+++I 
Sbjct: 413 LDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCG-SVEEARLVFSKIPVKDIVSWNTMIG 471

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           GYSQ+   +EA++LF  M+ ++ +P+ +T+  +L +C   + L  G  +H +I++ G   
Sbjct: 472 GYSQNLLPNEALELFLDMQ-KQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFS 530

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           D+ +  AL++MY+KCG +  +  +F+ +  +D +SWT +I+GYG HG+G EA+  F EM+
Sbjct: 531 DLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMR 590

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
            +G+EPD  +  AIL+AC+H+GL+ E    FN++  E  +   +EHYAC VDLL + G +
Sbjct: 591 IAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNL 650

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546
             A K + +MP+KP T I   L+S CRIH  +++AE +A  + E EP+N   Y +L+ V 
Sbjct: 651 SKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVY 710

Query: 547 SESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +E+  W   +++ + M+ +G  ++ G S IE
Sbjct: 711 AEAEKWEEVKKLRKRMQKRGFKQNPGCSWIE 741



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 142/522 (27%), Positives = 269/522 (51%), Gaps = 11/522 (2%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPY 91
           SV++ CA  ++ +  G ++H   + +G   D  +   L+ MY          ++FD++  
Sbjct: 99  SVLQLCAEKKSLED-GKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMN 157

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQI 151
                WN +++ + + G +  S+ +F++M   G V        ++   + +G+++  +++
Sbjct: 158 DKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRV 217

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQN 211
           H  V+  G F  +  V  +L+  Y K      A  +F+++   + VSW +MI+GC+ +  
Sbjct: 218 HGYVLKLG-FGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGF 276

Query: 212 YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAA 271
              G+++F  M   GV+    TL  VL+ACA + +L  G+A+HG+     F  +   S  
Sbjct: 277 SGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNT 336

Query: 272 LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP 331
           L+ MY +C   L+ A  +F +     +V W+SII  Y + G  S+A+ LF  M+ + + P
Sbjct: 337 LLDMYSKCGN-LNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRP 395

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIF 391
           +  T+ +I+ +C   S L  G  VH Y++K G+  ++ + NAL+NMY+KCGS+  +  +F
Sbjct: 396 DIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVF 455

Query: 392 NEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVK 451
           +++  +D VSW T+I GY  +    EAL+LFL+MQ+   +PD IT+  +L AC     + 
Sbjct: 456 SKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQKQ-FKPDDITMACVLPACAGLAALD 514

Query: 452 EAETLFNNVMKEKKIALAIEHYAC-YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVS 510
           +   +  +++  ++   +  H AC  VD+  K G +  A  +   +P K      + +++
Sbjct: 515 KGREIHGHIL--RRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLIS-WTVMIA 571

Query: 511 ACRIH--GRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESG 550
              +H  G   ++     ++   EP+ ++   +L+  CS SG
Sbjct: 572 GYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILN-ACSHSG 612



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 110/414 (26%), Positives = 207/414 (50%), Gaps = 5/414 (1%)

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL 145
           F    +  T + N+ IN F + G    ++E+  +     + L       ++ LC++   L
Sbjct: 53  FTNTTHSVTQNQNAKINKFCEMGDLRNAIELLTKSK--SYELGLNSYCSVLQLCAEKKSL 110

Query: 146 ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISG 205
           E G+++H+++I +G   +   +   L+ +Y  C   +   ++F++++      W  ++S 
Sbjct: 111 EDGKRVHSVIISNG-ISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSE 169

Query: 206 CIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFD 265
                N+   + LF+ MQ+ GV     T T VL   A L  ++  K +HGY    GF  +
Sbjct: 170 YAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSN 229

Query: 266 HHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR 325
             +  +L+  Y +    +  A  +F+     DVV W+S+I G   +G     +++F +M 
Sbjct: 230 TAVVNSLIAAYFK-FGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQML 288

Query: 326 LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSIT 385
           +  +E +  TL+++L +C     LS G  +H + +KA  + +V   N L++MYSKCG++ 
Sbjct: 289 ILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLN 348

Query: 386 SSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
            + ++F +M     VSWT++I+ Y   G   +A+ LF EMQ  GV PD  TV +I+ AC 
Sbjct: 349 GATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACA 408

Query: 446 HAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
            +  + +   + + V+K   +   +      +++  K G +E+A  V S +P+K
Sbjct: 409 CSSSLDKGRDVHSYVIKN-GMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVK 461



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 99/215 (46%), Gaps = 10/215 (4%)

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
           I  + + GDL  A++L ++ +   +  NS    ++L  C  +  L  G  VH  I+  G+
Sbjct: 68  INKFCEMGDLRNAIELLTKSKSYELGLNSYC--SVLQLCAEKKSLEDGKRVHSVIISNGI 125

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
           + D ++G  L+ MY  CG +    +IF+++       W  L+S Y   G   E++ LF +
Sbjct: 126 SVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKK 185

Query: 425 MQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLLG 481
           MQ+ GV  +  T   +L      G VKE + +   V+K       A+     A Y     
Sbjct: 186 MQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYF---- 241

Query: 482 KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG 516
           K G +E A  +   +  +P     +S+++ C ++G
Sbjct: 242 KFGGVESAHNLFDELS-EPDVVSWNSMINGCVVNG 275


>gi|15240444|ref|NP_198063.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635756|sp|O04659.2|PP398_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g27110
 gi|332006268|gb|AED93651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/573 (36%), Positives = 345/573 (60%), Gaps = 6/573 (1%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           +  TL ++K+ L+ S    ++   P+VIKA   A   +  G  +H   +KSG   D V++
Sbjct: 87  FHDTLEVFKRLLNCSICVPDSFTFPNVIKAYG-ALGREFLGRMIHTLVVKSGYVCDVVVA 145

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           +SL+ MYAKF+  E++ Q+FDEMP RD  SWN++I+CF Q+G   ++LE+F  M   GF 
Sbjct: 146 SSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQSGEAEKALELFGRMESSGFE 205

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
             +  L   IS CS++  LE G++IH   +  G FEL  +V++AL+D+Y KC    +A  
Sbjct: 206 PNSVSLTVAISACSRLLWLERGKEIHRKCVKKG-FELDEYVNSALVDMYGKCDCLEVARE 264

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VF++M  ++ V+W +MI G +   +  + +++   M  EG +P++ TLT +L+AC+  R+
Sbjct: 265 VFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRSRN 324

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVV-IWSSII 305
           L +GK IHGY      + D +++ +L+ +Y +C EA + A  +F +T+ KDV   W+ +I
Sbjct: 325 LLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEA-NLAETVFSKTQ-KDVAESWNVMI 382

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
             Y   G+  +A++++ +M    ++P+ VT  ++L +C++ + L  G  +H  I ++ L 
Sbjct: 383 SSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLE 442

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            D  + +AL++MYSKCG+   + +IFN +  +D VSWT +IS YG HG   EAL  F EM
Sbjct: 443 TDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQFDEM 502

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
           Q+ G++PD +T+LA+LSAC HAGL+ E    F+ +  +  I   IEHY+C +D+LG++G+
Sbjct: 503 QKFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGIEPIIEHYSCMIDILGRAGR 562

Query: 486 IEDACKVVSTMP-MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSM 544
           + +A +++   P    +  +LS+L SAC +H    + + +A  L+E  P++A+ Y +L  
Sbjct: 563 LLEAYEIIQQTPETSDNAELLSTLFSACCLHLEHSLGDRIARLLVENYPDDASTYMVLFN 622

Query: 545 VCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           + +   +W  A  V   M+  GL K  G S IE
Sbjct: 623 LYASGESWDAARRVRLKMKEMGLRKKPGCSWIE 655



 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 151/555 (27%), Positives = 283/555 (50%), Gaps = 14/555 (2%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEM 89
           L S+++ C  +         +H   L  G   D V+  SLI++Y       SA  +F+  
Sbjct: 6   LLSLLRECTNSTKSLRRIKLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVFENF 65

Query: 90  PYR-DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAEL-LAGIISLCSQIGELEL 147
             R D   WNS+++ +++N  +  +LE+F+ +  C   +        +I     +G   L
Sbjct: 66  DIRSDVYIWNSLMSGYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALGREFL 125

Query: 148 GRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCI 207
           GR IH LV+  G +   V V+++L+ +Y+K + +  +L+VF++M  R+  SW  +IS   
Sbjct: 126 GRMIHTLVVKSG-YVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFY 184

Query: 208 DSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
            S   +  ++LF  M+  G +P  V+LT+ + AC+ L  L  GK IH      GF+ D +
Sbjct: 185 QSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEY 244

Query: 268 LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
           +++AL+ MY +C + L  AR +F++   K +V W+S+I+GY   GD    +++ +RM +E
Sbjct: 245 VNSALVDMYGKC-DCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIE 303

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
              P+  TL +IL +C+R   L HG  +H Y++++ +N D+ +  +L+++Y KCG    +
Sbjct: 304 GTRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLA 363

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHA 447
             +F++       SW  +IS Y   G   +A++++ +M   GV+PD +T  ++L AC+  
Sbjct: 364 ETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQL 423

Query: 448 GLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSS 507
             +++ + +  ++  E ++       +  +D+  K G  ++A ++ +++P K      + 
Sbjct: 424 AALEKGKQIHLSI-SESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVS-WTV 481

Query: 508 LVSACRIHG--RLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAK 565
           ++SA   HG  R  + +    Q    +P+      +LS  C  +G      + +  MR+K
Sbjct: 482 MISAYGSHGQPREALYQFDEMQKFGLKPDGVTLLAVLS-ACGHAGLIDEGLKFFSQMRSK 540

Query: 566 GLSKSYGFSRIENEY 580
                YG   I   Y
Sbjct: 541 -----YGIEPIIEHY 550


>gi|125579001|gb|EAZ20147.1| hypothetical protein OsJ_35746 [Oryza sativa Japonica Group]
          Length = 601

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/559 (35%), Positives = 333/559 (59%), Gaps = 5/559 (0%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           SG   N A L SV+ AC   Q  + FGL +H  A+K G +    ++N+L+ MY KF   E
Sbjct: 35  SGFPLNVASLVSVVPACGTEQ-EEKFGLSIHALAVKVGLNTMVNLANALVDMYGKFGDVE 93

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
           ++ Q+FD M  ++ +SWNS I CF   GFY   L MFR+M     +  +  L+ ++    
Sbjct: 94  ASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALV 153

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
           ++G  +LGR++H   I   + +L +FV+ +L+D+Y+K      A  +FEQM  RN VSW 
Sbjct: 154 ELGSFDLGREVHGYSI-KRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWN 212

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
           AMI+  + +        L   MQ+ G  P  +TL  VL ACA +  L+ GK IH ++   
Sbjct: 213 AMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKMGKQIHAWSIRR 272

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
           G  FD  +S AL+ MY +C + L  AR IFER++ KD V ++++I GYSQS    E++ L
Sbjct: 273 GLMFDLFISNALIDMYSKCGQ-LSLARNIFERSE-KDDVSYNTLILGYSQSPWCFESLLL 330

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
           F +MR   I+ ++V+ +  LS+CT  S   HG  +HC +++  L+    + N+L+++Y+K
Sbjct: 331 FKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRLLSGHPFLSNSLLDLYTK 390

Query: 381 CGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
            G + ++ +IFN++  +D  SW T+I GYG HG  + A +LF  M+  G++ D ++ +A+
Sbjct: 391 GGMLVTASKIFNKITKKDVASWNTMILGYGMHGQIDIAFELFELMKGDGLDYDHVSYIAV 450

Query: 441 LSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKP 500
           L+AC+H GLV + +  F+  M  + I     HYAC VDLLG++G++    +++  MP   
Sbjct: 451 LAACSHGGLVDKGKKYFSQ-MVAQNIEPQQMHYACMVDLLGRAGQLSKCAEIIRDMPFPA 509

Query: 501 STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWR 560
           ++ +  +L+ ACRIHG +E+A+  A  L E +PE++  YTL+  + +E+G W  A ++ +
Sbjct: 510 NSDVWGALLGACRIHGNIELAQWAAEHLFELKPEHSGYYTLMINMYAETGRWNEANKIRK 569

Query: 561 VMRAKGLSKSYGFSRIENE 579
           +M+++ + K+  +S ++++
Sbjct: 570 LMKSRKVQKNPAYSWVQDQ 588



 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 143/467 (30%), Positives = 247/467 (52%), Gaps = 14/467 (2%)

Query: 89  MPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELG 148
           MP RD +SWNS+++ F  NG +  +      M   GF L    L  ++  C    E + G
Sbjct: 1   MPERDVVSWNSLVSAFLVNGMFHDARRALVSMMRSGFPLNVASLVSVVPACGTEQEEKFG 60

Query: 149 RQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCID 208
             IHAL +  G     V ++ AL+D+Y K      +++VF+ M+ +NEVSW + I   ++
Sbjct: 61  LSIHALAVKVG-LNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLN 119

Query: 209 SQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHL 268
           +  Y   + +FR M    V P  +TL+ +L A  EL     G+ +HGY+     D D  +
Sbjct: 120 AGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFV 179

Query: 269 SAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER 328
           + +L+ MY +   +L  A  IFE+ K ++VV W+++I    Q+G  +EA +L + M+   
Sbjct: 180 ANSLVDMYAKFG-SLEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSG 238

Query: 329 IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSH 388
             PNS+TL+ +L +C R + L  G  +H + ++ GL FD+ I NAL++MYSKCG ++ + 
Sbjct: 239 ECPNSITLVNVLPACARMASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLAR 298

Query: 389 QIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG 448
            IF E + +D VS+ TLI GY    +  E+L LF +M+  G++ DA++ +  LSAC +  
Sbjct: 299 NIF-ERSEKDDVSYNTLILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLS 357

Query: 449 LVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSL 508
           + K  + + + V+  + ++         +DL  K G +  A K+ + +  K      +++
Sbjct: 358 VFKHGKEI-HCVLVRRLLSGHPFLSNSLLDLYTKGGMLVTASKIFNKIT-KKDVASWNTM 415

Query: 509 VSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV-----CSESG 550
           +    +HG++++    A +L E    +  +Y  +S +     CS  G
Sbjct: 416 ILGYGMHGQIDI----AFELFELMKGDGLDYDHVSYIAVLAACSHGG 458


>gi|77554180|gb|ABA96976.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 780

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/559 (35%), Positives = 333/559 (59%), Gaps = 5/559 (0%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           SG   N A L SV+ AC   Q  + FGL +H  A+K G +    ++N+L+ MY KF   E
Sbjct: 214 SGFPLNVASLVSVVPACGTEQ-EEKFGLSIHALAVKVGLNTMVNLANALVDMYGKFGDVE 272

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
           ++ Q+FD M  ++ +SWNS I CF   GFY   L MFR+M     +  +  L+ ++    
Sbjct: 273 ASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALV 332

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
           ++G  +LGR++H   I   + +L +FV+ +L+D+Y+K      A  +FEQM  RN VSW 
Sbjct: 333 ELGSFDLGREVHGYSI-KRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWN 391

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
           AMI+  + +        L   MQ+ G  P  +TL  VL ACA +  L+ GK IH ++   
Sbjct: 392 AMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKMGKQIHAWSIRR 451

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
           G  FD  +S AL+ MY +C + L  AR IFER++ KD V ++++I GYSQS    E++ L
Sbjct: 452 GLMFDLFISNALIDMYSKCGQ-LSLARNIFERSE-KDDVSYNTLILGYSQSPWCFESLLL 509

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
           F +MR   I+ ++V+ +  LS+CT  S   HG  +HC +++  L+    + N+L+++Y+K
Sbjct: 510 FKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRLLSGHPFLSNSLLDLYTK 569

Query: 381 CGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
            G + ++ +IFN++  +D  SW T+I GYG HG  + A +LF  M+  G++ D ++ +A+
Sbjct: 570 GGMLVTASKIFNKITKKDVASWNTMILGYGMHGQIDIAFELFELMKGDGLDYDHVSYIAV 629

Query: 441 LSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKP 500
           L+AC+H GLV + +  F+  M  + I     HYAC VDLLG++G++    +++  MP   
Sbjct: 630 LAACSHGGLVDKGKKYFSQ-MVAQNIEPQQMHYACMVDLLGRAGQLSKCAEIIRDMPFPA 688

Query: 501 STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWR 560
           ++ +  +L+ ACRIHG +E+A+  A  L E +PE++  YTL+  + +E+G W  A ++ +
Sbjct: 689 NSDVWGALLGACRIHGNIELAQWAAEHLFELKPEHSGYYTLMINMYAETGRWNEANKIRK 748

Query: 561 VMRAKGLSKSYGFSRIENE 579
           +M+++ + K+  +S ++++
Sbjct: 749 LMKSRKVQKNPAYSWVQDQ 767



 Score =  258 bits (660), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 161/509 (31%), Positives = 273/509 (53%), Gaps = 14/509 (2%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           GL+LH +AL+ G  AD    N+L++ YA   K   A ++FDEMP RD +SWNS+++ F  
Sbjct: 138 GLELHASALRRGHLADVFTGNTLVAFYAACGKACDARRVFDEMPERDVVSWNSLVSAFLV 197

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           NG +  +      M   GF L    L  ++  C    E + G  IHAL +  G     V 
Sbjct: 198 NGMFHDARRALVSMMRSGFPLNVASLVSVVPACGTEQEEKFGLSIHALAVKVG-LNTMVN 256

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           ++ AL+D+Y K      +++VF+ M+ +NEVSW + I   +++  Y   + +FR M    
Sbjct: 257 LANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHN 316

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           V P  +TL+ +L A  EL     G+ +HGY+     D D  ++ +L+ MY +   +L  A
Sbjct: 317 VMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFG-SLEKA 375

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
             IFE+ K ++VV W+++I    Q+G  +EA +L + M+     PNS+TL+ +L +C R 
Sbjct: 376 STIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARM 435

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
           + L  G  +H + ++ GL FD+ I NAL++MYSKCG ++ +  IF E + +D VS+ TLI
Sbjct: 436 ASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIF-ERSEKDDVSYNTLI 494

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
            GY    +  E+L LF +M+  G++ DA++ +  LSAC +  + K  + + + V+  + +
Sbjct: 495 LGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEI-HCVLVRRLL 553

Query: 467 ALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAH 526
           +         +DL  K G +  A K+ + +  K      ++++    +HG++++    A 
Sbjct: 554 SGHPFLSNSLLDLYTKGGMLVTASKIFNKIT-KKDVASWNTMILGYGMHGQIDI----AF 608

Query: 527 QLIEAEPENAANYTLLSMV-----CSESG 550
           +L E    +  +Y  +S +     CS  G
Sbjct: 609 ELFELMKGDGLDYDHVSYIAVLAACSHGG 637



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 157/352 (44%), Gaps = 6/352 (1%)

Query: 149 RQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQ--MVIRNEVSWTAMISGC 206
           R+ HA  +V G+   S+ ++ ALL  Y+       A  V     + +R+   W ++    
Sbjct: 33  RRAHAASLVSGALATSLPLAGALLLSYAALSDLASARLVLRHHPLRLRSAFLWNSLSRAL 92

Query: 207 IDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAI--HGYAYCCGFDF 264
             +      + ++  M R  V+P   T    L A A        K +  H  A   G   
Sbjct: 93  SSASLPSEALRVYNLMLRSAVRPDDRTFPFALHAAAAAVASAEDKGLELHASALRRGHLA 152

Query: 265 DHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM 324
           D      L+  Y  C +A   AR +F+    +DVV W+S++  +  +G   +A +    M
Sbjct: 153 DVFTGNTLVAFYAACGKACD-ARRVFDEMPERDVVSWNSLVSAFLVNGMFHDARRALVSM 211

Query: 325 RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSI 384
                  N  +L++++ +C  +     GL +H   +K GLN  V++ NAL++MY K G +
Sbjct: 212 MRSGFPLNVASLVSVVPACGTEQEEKFGLSIHALAVKVGLNTMVNLANALVDMYGKFGDV 271

Query: 385 TSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
            +S Q+F+ M  ++ VSW + I  +   G+  + L++F +M E  V P +IT+ ++L A 
Sbjct: 272 EASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPAL 331

Query: 445 NHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
              G       +    +K + + L I      VD+  K G +E A  +   M
Sbjct: 332 VELGSFDLGREVHGYSIK-RAMDLDIFVANSLVDMYAKFGSLEKASTIFEQM 382


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/572 (35%), Positives = 328/572 (57%), Gaps = 5/572 (0%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           +  ++ L+K+ +  SG+  ++     V K+ +  ++  + G QLH   LKSG      + 
Sbjct: 176 FSGSIGLFKK-MMSSGVEMDSYTFSCVSKSFSSLRS-VNGGEQLHGYILKSGFGERNSVG 233

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           NSL++ Y K  + +SA ++FDEM  RD ISWNSIIN +  NG   + L +F +M   G  
Sbjct: 234 NSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIE 293

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
           +    +  + + C+    + LGR +H    V   F         LLD+YSKC     A  
Sbjct: 294 IDLATIVSVFAGCADSRLISLGRAVHCFG-VKACFSREDRFCNTLLDMYSKCGDLDSAKV 352

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VF +M  R+ VS+T+MI+G          + LF  M+ EG+ P   T+T VL  CA  R 
Sbjct: 353 VFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRL 412

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L  GK +H +       FD  +S ALM MY +C  ++  A ++F   +VKD++ W+++I 
Sbjct: 413 LDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCG-SMREAELVFSEMRVKDIISWNTVIG 471

Query: 307 GYSQSGDLSEAMKLFSRMRLE-RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
           GYS++   +EA+ LF+ + +E R  P+  T+  +L +C   S    G  +H YIM+ G  
Sbjct: 472 GYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYF 531

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            D  + N+L++MY+KCG++  +  +F+++ ++D VSWT +I+GYG HG+G+EA+ LF +M
Sbjct: 532 SDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMIAGYGMHGFGKEAIALFNQM 591

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
           +++G+EPD I+ +++L AC+H+GLV E    FN +  E KI   +EHYAC VD+L ++G 
Sbjct: 592 RQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGN 651

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV 545
           +  A + +  MP+ P   I  +L+  CRIH  +++AE +A ++ E EPEN   Y L++ +
Sbjct: 652 LSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAERVAEKVFELEPENTGYYVLMANI 711

Query: 546 CSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +E+  W   + + + +  +GL K+ G S IE
Sbjct: 712 YAEAEKWEEVKRLRKRIGQRGLRKNPGCSWIE 743



 Score =  222 bits (565), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 155/548 (28%), Positives = 273/548 (49%), Gaps = 15/548 (2%)

Query: 18  LHPSGLYS-NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           LH SG +  +   L SV++ CA +++ +  G ++      +G   D  + + L  MY   
Sbjct: 84  LHVSGKWDIDPRTLCSVLQLCADSKSLKD-GKEVDNFIRGNGFVLDSNLGSKLALMYTNC 142

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
              + A ++FD++     + WN ++N   ++G +  S+ +F++M   G  + +   + + 
Sbjct: 143 GDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVS 202

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
              S +  +  G Q+H  ++  G  E +  V  +L+  Y K H    A +VF++M  R+ 
Sbjct: 203 KSFSSLRSVNGGEQLHGYILKSGFGERNS-VGNSLVAFYLKNHRVDSARKVFDEMTERDV 261

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           +SW ++I+G + +   + G+ +F  M   G++    T+  V   CA+ R +  G+A+H +
Sbjct: 262 ISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCF 321

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
                F  +      L+ MY +C + L  A+++F     + VV ++S+I GY++ G   E
Sbjct: 322 GVKACFSREDRFCNTLLDMYSKCGD-LDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGE 380

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
           A+KLF  M  E I P+  T+ A+L+ C R   L  G  VH +I +  + FD+ + NALM+
Sbjct: 381 AVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMD 440

Query: 377 MYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF-LEMQESGVEPDAI 435
           MY+KCGS+  +  +F+EM  +D +SW T+I GY  + Y  EAL LF L + E    PD  
Sbjct: 441 MYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDER 500

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYA-CYVDLLGKSGKIEDACKVVS 494
           TV  +L AC       +   +   +M+      +  H A   VD+  K G +  A  +  
Sbjct: 501 TVACVLPACASLSAFDKGREIHGYIMRNG--YFSDRHVANSLVDMYAKCGALLLARLLFD 558

Query: 495 TMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLSMVCSESGNW 552
            +  K      + +++   +HG  + A  L +Q+ +A  EP+  +  +LL   CS SG  
Sbjct: 559 DITSKDLVS-WTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLL-YACSHSGL- 615

Query: 553 LGAEEVWR 560
              +E WR
Sbjct: 616 --VDEGWR 621



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 133/243 (54%), Gaps = 3/243 (1%)

Query: 208 DSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
           +S N    + L     +  + P   TL  VL  CA+ + L++GK +  +    GF  D +
Sbjct: 73  ESGNLKNAVKLLHVSGKWDIDPR--TLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSN 130

Query: 268 LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
           L + L  MY  C + L  A  +F++ K++  + W+ ++   ++SGD S ++ LF +M   
Sbjct: 131 LGSKLALMYTNCGD-LKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSS 189

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
            +E +S T   +  S +    ++ G  +H YI+K+G     S+GN+L+  Y K   + S+
Sbjct: 190 GVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSA 249

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHA 447
            ++F+EM  RD +SW ++I+GY  +G  E+ L +F++M  SG+E D  T++++ + C  +
Sbjct: 250 RKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADS 309

Query: 448 GLV 450
            L+
Sbjct: 310 RLI 312



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 74/158 (46%), Gaps = 2/158 (1%)

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
           +R + +SG+L  A+KL        I+P   TL ++L  C     L  G  V  +I   G 
Sbjct: 68  LRRFCESGNLKNAVKLLHVSGKWDIDPR--TLCSVLQLCADSKSLKDGKEVDNFIRGNGF 125

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
             D ++G+ L  MY+ CG +  + ++F+++     + W  L++     G    ++ LF +
Sbjct: 126 VLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKK 185

Query: 425 MQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462
           M  SGVE D+ T   +  + +    V   E L   ++K
Sbjct: 186 MMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILK 223


>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/552 (35%), Positives = 319/552 (57%), Gaps = 3/552 (0%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           N+    SV+  CA ++    FG QLH   +  G   DP+++N+L++MY+KF +   A +L
Sbjct: 72  NSITFASVLSICA-SEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKFGQLSDALKL 130

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL 145
           F+ MP  + ++WN +I  F QNGF   +  +F EM   G    +   A  +   ++   L
Sbjct: 131 FNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPSVTESASL 190

Query: 146 ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISG 205
           + G++IH  ++  G   L VF+ +AL+D+Y KC    +A ++F+Q    + V  TA+ISG
Sbjct: 191 KQGKEIHGYILRHG-IALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIISG 249

Query: 206 CIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFD 265
            + +   +  +++FR +  E + P  VTL  VL ACA L  L  GK +H      G D  
Sbjct: 250 YVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANILKHGLDER 309

Query: 266 HHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR 325
            H+ +A+M MY +C   L  A  IF R   KD V W++II   SQ+G   EA+ LF +M 
Sbjct: 310 RHVGSAIMDMYAKCGR-LDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMG 368

Query: 326 LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSIT 385
            E +  + V++ A LS+C     L HG  +H +++K   + +V   +AL++MY KCG+++
Sbjct: 369 REGLSYDCVSISAALSACANLPALHHGKAIHSFMIKGAFDSEVFAESALIDMYGKCGNLS 428

Query: 386 SSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
            +  +F+ M  ++ VSW ++I+ YG HG+ E +L LF +M E G++PD +T L ILSAC 
Sbjct: 429 VARCVFDMMREKNEVSWNSIIAAYGSHGHLEVSLALFHKMLEDGIQPDHVTFLTILSACG 488

Query: 446 HAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRIL 505
           HAG V +    F  + +E  I   +EHYAC VDL G++G++ +A + +  MP  P   + 
Sbjct: 489 HAGQVDKGIQYFRCMTEEYGIPARMEHYACIVDLFGRAGRLNEAFETIKNMPFSPDDGVW 548

Query: 506 SSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAK 565
            +L+ ACR+HG +E+AE+ +  L++ +PEN+  Y LLS V +++G W    ++  +M+ +
Sbjct: 549 GTLLGACRVHGNVELAEVASRCLLDLDPENSGCYVLLSNVHADAGQWGSVRKIRSLMKKR 608

Query: 566 GLSKSYGFSRIE 577
           G+ K  G+S IE
Sbjct: 609 GVQKVPGYSWIE 620



 Score =  251 bits (642), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 165/525 (31%), Positives = 278/525 (52%), Gaps = 17/525 (3%)

Query: 58  GSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMF 117
           G + D  + +SLI +YA+    E A +LFD+MP +D + WN ++N F + G    ++++F
Sbjct: 2   GFNVDEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVF 61

Query: 118 REMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSK 177
            +M  C     +   A ++S+C+     E G Q+H LVI  G F     V+ AL+ +YSK
Sbjct: 62  EDMRNCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCG-FHFDPLVANALVAMYSK 120

Query: 178 CHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIV 237
                 AL++F  M   N V+W  MI+G + +   D    LF  M   GV P  +T    
Sbjct: 121 FGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASF 180

Query: 238 LLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKD 297
           L +  E   L+ GK IHGY    G   D  L +AL+ +Y +C +     +I  + T V D
Sbjct: 181 LPSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNV-D 239

Query: 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHC 357
           +V+ ++II GY  +G  ++A+++F  +  E++ PN+VTL ++L +C   + L+ G  +H 
Sbjct: 240 IVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHA 299

Query: 358 YIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEE 417
            I+K GL+    +G+A+M+MY+KCG +  ++QIF  M  +D V W  +I+    +G  +E
Sbjct: 300 NILKHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQE 359

Query: 418 ALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYA--C 475
           A+ LF +M   G+  D +++ A LSAC +   +   + + + ++K    A   E +A   
Sbjct: 360 AIDLFRQMGREGLSYDCVSISAALSACANLPALHHGKAIHSFMIKG---AFDSEVFAESA 416

Query: 476 YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EP 533
            +D+ GK G +  A  V   M  K      +S+++A   HG LEV+  L H+++E   +P
Sbjct: 417 LIDMYGKCGNLSVARCVFDMMREKNEVS-WNSIIAAYGSHGHLEVSLALFHKMLEDGIQP 475

Query: 534 ENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGF-SRIE 577
           ++    T+LS  C  +G      + +R M     ++ YG  +R+E
Sbjct: 476 DHVTFLTILS-ACGHAGQVDKGIQYFRCM-----TEEYGIPARME 514


>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 697

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 208/572 (36%), Positives = 336/572 (58%), Gaps = 4/572 (0%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           Y++ L L+ + +    L  ++   PSV+KAC         G  +H   +K G   D V+ 
Sbjct: 86  YDEALGLFDKLMCYPCLKPDSYTYPSVLKACG-GLRRVVLGQMIHTCLVKEGLMVDIVVG 144

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           +SL+ MYAK ++ E A +LFDEMP +D   WN++I+C+ Q+G +  +L  F  M   GF 
Sbjct: 145 SSLVGMYAKCNEFECAVKLFDEMPDKDVACWNTVISCYYQSGKFEEALRYFGMMRRFGFE 204

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
             +  +   IS C+++ +L+ GR+IH   +V+  F +  FVS AL+D+Y KC    +A+ 
Sbjct: 205 PDSVTITTAISSCARLLDLDRGREIHK-ELVNSGFRMDSFVSAALVDMYGKCGQLEMAIE 263

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VFEQM  +  V+W +MI+G     +  + I LF+ M  EGVKPT  TLT  L+AC++   
Sbjct: 264 VFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMACSQSAQ 323

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L  GK +HGY        D  L+++LM +Y +C + +  A  IF+       V W+ +I 
Sbjct: 324 LLEGKFVHGYIIRNRIQPDIFLNSSLMDLYFKCGK-VESAETIFKLMPKTTTVSWNVMIS 382

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           GY   G L +A++LF  M    +EP+++T  ++L++C++ + L  G  +H  I++  L  
Sbjct: 383 GYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKGREIHNLIVERNLGN 442

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           +  +  AL++MY+KCG++  +  +F  +  RD VSWT++I+ YG HG   EAL+LF EM 
Sbjct: 443 NEVVMGALLDMYAKCGAVEEAFGVFKCLPERDLVSWTSMITAYGSHGRVYEALELFAEML 502

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
           +S V+PD +T LAILSAC+HAGLV +    FN ++    I   IEHY+C + LLG++G++
Sbjct: 503 QSNVKPDRVTFLAILSACSHAGLVDDGLYHFNQMINVYGIIPRIEHYSCLITLLGRAGRL 562

Query: 487 EDACKVVSTMP-MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV 545
            +A +++ + P +    ++LS+L SACR+H  L++   +A  LI+ +P++++ Y +LS +
Sbjct: 563 HEAYEILQSNPEISDDFQLLSTLFSACRLHKNLDLGVEIAENLIDKDPDDSSTYIILSNM 622

Query: 546 CSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +  G W     V   M+  GL K+ G S IE
Sbjct: 623 YASFGKWDEVRMVRSKMKDLGLKKNPGCSWIE 654



 Score =  234 bits (598), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 157/510 (30%), Positives = 272/510 (53%), Gaps = 13/510 (2%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFD--EMPYRDTISWNSIINCF 104
           G  LH   +  G   D  +  +LIS+Y   +  + A  +FD  E P+  ++  N ++  +
Sbjct: 22  GKVLHQKVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNVFDVIENPFEISLC-NGLMAGY 80

Query: 105 TQNGFYVRSLEMFREMYLCGFVLKAE--LLAGIISLCSQIGELELGRQIHALVIVDGSFE 162
           T+N  Y  +L +F ++ +C   LK +      ++  C  +  + LG+ IH  ++ +G   
Sbjct: 81  TRNCMYDEALGLFDKL-MCYPCLKPDSYTYPSVLKACGGLRRVVLGQMIHTCLVKEG-LM 138

Query: 163 LSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM 222
           + + V ++L+ +Y+KC+ +  A+++F++M  ++   W  +IS    S  ++  +  F  M
Sbjct: 139 VDIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACWNTVISCYYQSGKFEEALRYFGMM 198

Query: 223 QREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEA 282
           +R G +P  VT+T  + +CA L DL  G+ IH      GF  D  +SAAL+ MY +C + 
Sbjct: 199 RRFGFEPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRMDSFVSAALVDMYGKCGQ- 257

Query: 283 LHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSS 342
           L  A  +FE+   K VV W+S+I GY   GD    ++LF RM  E ++P   TL + L +
Sbjct: 258 LEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMA 317

Query: 343 CTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSW 402
           C++ + L  G  VH YI++  +  D+ + ++LM++Y KCG + S+  IF  M     VSW
Sbjct: 318 CSQSAQLLEGKFVHGYIIRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLMPKTTTVSW 377

Query: 403 TTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462
             +ISGY   G   +AL+LF EM +S VEPDAIT  ++L+AC+    +++   + +N++ 
Sbjct: 378 NVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKGREI-HNLIV 436

Query: 463 EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRL-EVA 521
           E+ +          +D+  K G +E+A  V   +P +      +S+++A   HGR+ E  
Sbjct: 437 ERNLGNNEVVMGALLDMYAKCGAVEEAFGVFKCLPERDLVS-WTSMITAYGSHGRVYEAL 495

Query: 522 EMLAHQL-IEAEPENAANYTLLSMVCSESG 550
           E+ A  L    +P+      +LS  CS +G
Sbjct: 496 ELFAEMLQSNVKPDRVTFLAILS-ACSHAG 524


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/571 (35%), Positives = 327/571 (57%), Gaps = 5/571 (0%)

Query: 7    YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
            + +++ L+K+ +   G+  N      V+K C  A        ++H   LK G  ++  + 
Sbjct: 451  FRESVSLFKK-MQKLGVVGNCYTFTCVLK-CFAALGKVKECKRVHGYVLKLGFGSNTAVV 508

Query: 67   NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
            NSLI+ Y KF   ESA+ LFDE+   D +SWNS+IN    NGF    LE+F +M + G  
Sbjct: 509  NSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVE 568

Query: 127  LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
            +    L  ++   + IG L LGR +H    V   F   V  S  LLD+YSKC +   A  
Sbjct: 569  VDLTTLVSVLVAWANIGNLSLGRALHGFG-VKACFSEEVVFSNTLLDMYSKCGNLNGATE 627

Query: 187  VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
            VF +M     VSWT+ I+  +    Y   I LF  MQ +GV+P   T+T ++ ACA    
Sbjct: 628  VFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSS 687

Query: 247  LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
            L  G+ +H Y    G   +  ++ AL++MY +C  ++  AR++F +  VKD+V W+++I 
Sbjct: 688  LDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCG-SVEEARLVFSKIPVKDIVSWNTMIG 746

Query: 307  GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
            GYSQ+   +EA++LF  M+ ++ +P+ +T+  +L +C   + L  G  +H +I++ G   
Sbjct: 747  GYSQNSLPNEALELFLDMQ-KQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFS 805

Query: 367  DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
            D+ +  AL++MY+KCG +  +  +F+ +  +D +SWT +I+GYG HG+G EA+  F EM+
Sbjct: 806  DLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMR 865

Query: 427  ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
             +G+EPD  +   IL+AC+H+GL+ E    FN++  E  +   +EHYAC VDLL + G +
Sbjct: 866  IAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNL 925

Query: 487  EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546
              A K + +MP+KP T I   L+S CRIH  +++AE +A  + E EP+N   Y +L+ V 
Sbjct: 926  SKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVY 985

Query: 547  SESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +E+  W   +++ + M+ +G  ++ G S IE
Sbjct: 986  AEAEKWEEVKKLRKRMQKRGFKQNPGCSWIE 1016



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 139/522 (26%), Positives = 268/522 (51%), Gaps = 11/522 (2%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPY 91
           SV++ CA  ++ +  G ++H   + +G   D  +   L+ MY          ++FD++  
Sbjct: 374 SVLQLCAEKKSLED-GKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMN 432

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQI 151
                WN +++ + + G +  S+ +F++M   G V        ++   + +G+++  +++
Sbjct: 433 DKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRV 492

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQN 211
           H  V+  G F  +  V  +L+  Y K      A  +F+++   + VSW +MI+GC+ +  
Sbjct: 493 HGYVLKLG-FGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGF 551

Query: 212 YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAA 271
              G+++F  M   GV+    TL  VL+A A + +L  G+A+HG+     F  +   S  
Sbjct: 552 SGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNT 611

Query: 272 LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP 331
           L+ MY +C   L+ A  +F +     +V W+S I  Y + G  S+A+ LF  M+ + + P
Sbjct: 612 LLDMYSKCGN-LNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRP 670

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIF 391
           +  T+ +I+ +C   S L  G  VH Y++K G+  ++ + NAL+NMY+KCGS+  +  +F
Sbjct: 671 DIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVF 730

Query: 392 NEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVK 451
           +++  +D VSW T+I GY  +    EAL+LFL+MQ+   +PD IT+  +L AC     + 
Sbjct: 731 SKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQKQ-FKPDDITMACVLPACAGLAALD 789

Query: 452 EAETLFNNVMKEKKIALAIEHYAC-YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVS 510
           +   +  +++  ++   +  H AC  VD+  K G +  A  +   +P K      + +++
Sbjct: 790 KGREIHGHIL--RRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLIS-WTVMIA 846

Query: 511 ACRIH--GRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESG 550
              +H  G   ++     ++   EP+ ++ ++++   CS SG
Sbjct: 847 GYGMHGFGNEAISTFNEMRIAGIEPDESS-FSVILNACSHSG 887



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 109/414 (26%), Positives = 205/414 (49%), Gaps = 5/414 (1%)

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL 145
           F    +  T + N+ IN F + G    ++E+  +     + L       ++ LC++   L
Sbjct: 328 FTNTTHSVTQNQNAKINKFCEMGDLRNAIELLTKSK--SYELGLNSYCSVLQLCAEKKSL 385

Query: 146 ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISG 205
           E G+++H+++I +G   +   +   L+ +Y  C   +   ++F++++      W  ++S 
Sbjct: 386 EDGKRVHSVIISNG-ISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSE 444

Query: 206 CIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFD 265
                N+   + LF+ MQ+ GV     T T VL   A L  ++  K +HGY    GF  +
Sbjct: 445 YAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSN 504

Query: 266 HHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR 325
             +  +L+  Y +    +  A  +F+     DVV W+S+I G   +G     +++F +M 
Sbjct: 505 TAVVNSLIAAYFK-FGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQML 563

Query: 326 LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSIT 385
           +  +E +  TL+++L +      LS G  +H + +KA  + +V   N L++MYSKCG++ 
Sbjct: 564 ILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLN 623

Query: 386 SSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
            + ++F +M     VSWT+ I+ Y   G   +A+ LF EMQ  GV PD  TV +I+ AC 
Sbjct: 624 GATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACA 683

Query: 446 HAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
            +  + +   + + V+K   +   +      +++  K G +E+A  V S +P+K
Sbjct: 684 CSSSLDKGRDVHSYVIKN-GMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVK 736



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 99/215 (46%), Gaps = 10/215 (4%)

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
           I  + + GDL  A++L ++ +   +  NS    ++L  C  +  L  G  VH  I+  G+
Sbjct: 343 INKFCEMGDLRNAIELLTKSKSYELGLNSYC--SVLQLCAEKKSLEDGKRVHSVIISNGI 400

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
           + D ++G  L+ MY  CG +    +IF+++       W  L+S Y   G   E++ LF +
Sbjct: 401 SIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKK 460

Query: 425 MQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLLG 481
           MQ+ GV  +  T   +L      G VKE + +   V+K       A+     A Y     
Sbjct: 461 MQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYF---- 516

Query: 482 KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG 516
           K G +E A  +   +  +P     +S+++ C ++G
Sbjct: 517 KFGGVESAHNLFDELS-EPDVVSWNSMINGCVVNG 550


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/575 (35%), Positives = 337/575 (58%), Gaps = 10/575 (1%)

Query: 5   HFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPV 64
           HF E  +  + Q L  +   ++    P V+KAC   QT    G ++HC   K G   D  
Sbjct: 154 HFRE-AIDCFYQLLLVTKFQADFYTFPPVLKAC---QTLVD-GRKIHCWVFKLGFQWDVF 208

Query: 65  ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG 124
           ++ SLI MY++F     A  LFD+MP+RD  SWN++I+   QNG   ++L++  EM L G
Sbjct: 209 VAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEG 268

Query: 125 FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
             + +  +A I+ +C+Q+G++     IH  VI  G  E  +FVS AL+++Y+K  +   A
Sbjct: 269 INMDSVTVASILPVCAQLGDISTATLIHLYVIKHG-LEFELFVSNALINMYAKFGNLGDA 327

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
            +VF+QM +R+ VSW ++I+    + +  T    F  MQ  G++P  +TL  +    A+ 
Sbjct: 328 QKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQS 387

Query: 245 RDLRNGKAIHGYAYCCGFDFDHH-LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
           RD +N +++HG+    G+  +   +  A+M MY +    +  A  +F    VKDVV W++
Sbjct: 388 RDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLG-VIDSAHKVFNLIPVKDVVSWNT 446

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLER-IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
           +I GY+Q+G  SEA++++  M   R I+ N  T ++IL++      L  G+ +H +++K 
Sbjct: 447 LISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKT 506

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
            L+ DV +G  L+++Y KCG +  +  +F ++     V W  +IS +G HG+GE+AL+LF
Sbjct: 507 NLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHGIHGHGEKALKLF 566

Query: 423 LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGK 482
            EMQ+ GV+PD +T +++LSAC+H+GLV E +  F ++M+E  I  +++HY C VDLLG+
Sbjct: 567 REMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFF-HLMQEYGIKPSLKHYGCMVDLLGR 625

Query: 483 SGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLL 542
           +G +E A   +  MP+ P   I  +L+ ACRIHG +E+ +  + +L E + EN   Y LL
Sbjct: 626 AGFLEMAYDFIKDMPLHPDASIWGALLGACRIHGNIELGKFASDRLFEVDSENVGYYVLL 685

Query: 543 SMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           S + +  G W G ++V  + R +GL K+ G+S IE
Sbjct: 686 SNIYANVGKWEGVDKVRSLARERGLKKTPGWSSIE 720



 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 163/527 (30%), Positives = 285/527 (54%), Gaps = 13/527 (2%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           +LH   + SG      IS  L+++YA       +   FD++  +D  +WNS+I+ + +NG
Sbjct: 94  RLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVRNG 153

Query: 109 FYVRSLEMFREMYLC-GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFV 167
            +  +++ F ++ L   F         ++  C  + +   GR+IH  V   G F+  VFV
Sbjct: 154 HFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVD---GRKIHCWVFKLG-FQWDVFV 209

Query: 168 STALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV 227
           + +L+ +YS+     IA  +F+ M  R+  SW AMISG I + N    +D+   M+ EG+
Sbjct: 210 AASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGI 269

Query: 228 KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPAR 287
               VT+  +L  CA+L D+     IH Y    G +F+  +S AL++MY +    L  A+
Sbjct: 270 NMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGN-LGDAQ 328

Query: 288 IIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQS 347
            +F++  ++DVV W+SII  Y Q+ D   A   F +M+L  +EP+ +TL+++ S   +  
Sbjct: 329 KVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSR 388

Query: 348 FLSHGLGVHCYIMKAGLNFD-VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
              +   VH +IM+ G   + V IGNA+M+MY+K G I S+H++FN +  +D VSW TLI
Sbjct: 389 DYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLI 448

Query: 407 SGYGFHGYGEEALQLFLEMQE-SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           SGY  +G   EA++++  M+E   ++ +  T ++IL+A  H G +++   +  +++K   
Sbjct: 449 SGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIK-TN 507

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
           + L +    C +DL GK G++ DA  +   +P + S+   ++++S   IHG  E A  L 
Sbjct: 508 LHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVP-RESSVPWNAIISCHGIHGHGEKALKLF 566

Query: 526 HQLIE--AEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKS 570
            ++ +   +P++    +LLS  CS SG     +  + +M+  G+  S
Sbjct: 567 REMQDEGVKPDHVTFISLLS-ACSHSGLVDEGKWFFHLMQEYGIKPS 612



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 106/354 (29%), Positives = 198/354 (55%), Gaps = 6/354 (1%)

Query: 147 LGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGC 206
           L +++HAL++V G  + S F+S  L++LY+      ++   F+Q+  ++  +W +MIS  
Sbjct: 91  LAKRLHALLVVSGKIQ-SNFISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAY 149

Query: 207 IDSQNYDTGIDLF-RAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFD 265
           + + ++   ID F + +     +    T   VL AC  L D   G+ IH + +  GF +D
Sbjct: 150 VRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVD---GRKIHCWVFKLGFQWD 206

Query: 266 HHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR 325
             ++A+L+HMY      +  AR +F+    +D+  W+++I G  Q+G+ ++A+ +   MR
Sbjct: 207 VFVAASLIHMYSRFG-FVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMR 265

Query: 326 LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSIT 385
           LE I  +SVT+ +IL  C +   +S    +H Y++K GL F++ + NAL+NMY+K G++ 
Sbjct: 266 LEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLG 325

Query: 386 SSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
            + ++F +M  RD VSW ++I+ Y  +     A   F +MQ +G+EPD +T++++ S   
Sbjct: 326 DAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAA 385

Query: 446 HAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
            +   K + ++   +M+   +  A+      +D+  K G I+ A KV + +P+K
Sbjct: 386 QSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVK 439


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 203/573 (35%), Positives = 331/573 (57%), Gaps = 9/573 (1%)

Query: 7    YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFG--LQLHCTALKSGSDADPV 64
            Y ++++L+K+ +   G+  N+     ++K  A   T    G   ++H    K G  +   
Sbjct: 534  YRESIYLFKK-MQKLGITGNSYTFSCILKCFA---TLGRVGECKRIHGCVYKLGFGSYNT 589

Query: 65   ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG 124
            + NSLI+ Y K  + +SA++LFDE+  RD +SWNS+I+    NGF   +LE F +M +  
Sbjct: 590  VVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILR 649

Query: 125  FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
              +    L   ++ C+ +G L LGR +H    V   F   V  +  LLD+YSKC +   A
Sbjct: 650  VGVDLATLVNSVAACANVGSLSLGRALHGQG-VKACFSREVMFNNTLLDMYSKCGNLNDA 708

Query: 185  LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
            ++ FE+M  +  VSWT++I+  +    YD  I LF  M+ +GV P   ++T VL ACA  
Sbjct: 709  IQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACG 768

Query: 245  RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
              L  G+ +H Y           +S ALM MY +C  ++  A ++F +  VKD+V W+++
Sbjct: 769  NSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCG-SMEEAYLVFSQIPVKDIVSWNTM 827

Query: 305  IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
            I GYS++   +EA+KLF+ M+ E   P+ +T+  +L +C   + L  G G+H  I++ G 
Sbjct: 828  IGGYSKNSLPNEALKLFAEMQKES-RPDGITMACLLPACGSLAALEIGRGIHGCILRNGY 886

Query: 365  NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
            + ++ + NAL++MY KCGS+  +  +F+ +  +D ++WT +ISG G HG G EA+  F +
Sbjct: 887  SSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQK 946

Query: 425  MQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSG 484
            M+ +G++PD IT  +IL AC+H+GL+ E    FN+++ E  +   +EHYAC VDLL ++G
Sbjct: 947  MRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTG 1006

Query: 485  KIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSM 544
             +  A  ++ TMP+KP   I  +L+  CRIH  +E+AE +A  + E EP+NA  Y LL+ 
Sbjct: 1007 NLSKAYNLIETMPIKPDATIWGALLCGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLAN 1066

Query: 545  VCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            + +E+  W   +++   +  +GL KS G S IE
Sbjct: 1067 IYAEAEKWEEVKKLRERIGKRGLKKSPGCSWIE 1099



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 142/527 (26%), Positives = 253/527 (48%), Gaps = 20/527 (3%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPY 91
           S+++ CA  +  Q  G  +H     +G   + V+   L+ MY          ++FD +  
Sbjct: 456 SILQLCAEHKCLQE-GKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILS 514

Query: 92  RDTIS-WNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQ 150
            + +  WN +++ + + G Y  S+ +F++M   G    +   + I+   + +G +   ++
Sbjct: 515 DNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKR 574

Query: 151 IHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQ 210
           IH  V   G    +  V++ L+  Y K      A ++F+++  R+ VSW +MISGC+ + 
Sbjct: 575 IHGCVYKLGFGSYNTVVNS-LIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNG 633

Query: 211 NYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSA 270
              + ++ F  M    V     TL   + ACA +  L  G+A+HG      F  +   + 
Sbjct: 634 FSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNN 693

Query: 271 ALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE 330
            L+ MY +C   L+ A   FE+   K VV W+S+I  Y + G   +A++LF  M  + + 
Sbjct: 694 TLLDMYSKCGN-LNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVS 752

Query: 331 PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQI 390
           P+  ++ ++L +C   + L  G  VH YI K  +   + + NALM+MY+KCGS+  ++ +
Sbjct: 753 PDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLV 812

Query: 391 FNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLV 450
           F+++  +D VSW T+I GY  +    EAL+LF EMQ+    PD IT+  +L AC     +
Sbjct: 813 FSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKES-RPDGITMACLLPACGSLAAL 871

Query: 451 KEAE-----TLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRIL 505
           +         L N    E  +A A+      +D+  K G +  A  +   +P K      
Sbjct: 872 EIGRGIHGCILRNGYSSELHVANAL------IDMYVKCGSLVHARLLFDMIPEKDLI-TW 924

Query: 506 SSLVSACRIH--GRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESG 550
           + ++S C +H  G   +A     ++   +P+    +T +   CS SG
Sbjct: 925 TVMISGCGMHGLGNEAIATFQKMRIAGIKPDEIT-FTSILYACSHSG 970



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 119/434 (27%), Positives = 216/434 (49%), Gaps = 15/434 (3%)

Query: 76  FSKPESAYQL--FDEMPYRDT-------ISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           F +P   Y L  + ++P   T       +  N+ I  F + G    ++E+ R        
Sbjct: 391 FQQPSRKYFLSSYLDVPRSSTRVGAFAKLDENTKICKFCEVGDLRNAVELLRMSQKSELD 450

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
           L A   + I+ LC++   L+ G+ +H+++  +G   +   +   L+ +Y  C       R
Sbjct: 451 LNA--YSSILQLCAEHKCLQEGKMVHSVISSNG-IPIEGVLGAKLVFMYVSCGALREGRR 507

Query: 187 VFEQMVIRNEVS-WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
           +F+ ++  N+V  W  M+S      +Y   I LF+ MQ+ G+     T + +L   A L 
Sbjct: 508 IFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLG 567

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
            +   K IHG  Y  GF   + +  +L+  Y +  E +  A  +F+    +DVV W+S+I
Sbjct: 568 RVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGE-VDSAHKLFDELGDRDVVSWNSMI 626

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
            G   +G    A++ F +M + R+  +  TL+  +++C     LS G  +H   +KA  +
Sbjct: 627 SGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFS 686

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            +V   N L++MYSKCG++  + Q F +M  +  VSWT+LI+ Y   G  ++A++LF EM
Sbjct: 687 REVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEM 746

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
           +  GV PD  ++ ++L AC     + +   + +N +++  +AL +      +D+  K G 
Sbjct: 747 ESKGVSPDVYSMTSVLHACACGNSLDKGRDV-HNYIRKNNMALCLPVSNALMDMYAKCGS 805

Query: 486 IEDACKVVSTMPMK 499
           +E+A  V S +P+K
Sbjct: 806 MEEAYLVFSQIPVK 819


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 199/531 (37%), Positives = 308/531 (58%), Gaps = 3/531 (0%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           GL +H   +K G  A   + N+LIS YAK ++ E A  +FDEMP RD ISWNSII     
Sbjct: 3   GLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCAS 62

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           NG Y +++E+F  M+L G  L +  L  ++  C Q     +G  +H   +  G       
Sbjct: 63  NGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLIS-ETS 121

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           +  ALLD+YS C  W    ++F  M  +N VSWTAMI+    + ++D    LF+ M  EG
Sbjct: 122 LGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEG 181

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           ++P    +T  L A A    L++GK++HGYA   G +    ++ ALM MY +C   +  A
Sbjct: 182 IRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCG-YMEEA 240

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
           R IF+    KD + W+++I GYS+S   +EA  LF+ M L+ + PN+VT+  IL +    
Sbjct: 241 RFIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQ-LRPNAVTMACILPAAASL 299

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
           S L  G  +H Y ++ G   D  + NAL++MY KCG++  + ++F+ +  ++ +SWT +I
Sbjct: 300 SSLERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMI 359

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
           +GYG HG G +A+ LF +M+ SG++PDA +  AIL AC+H+GL  E    FN +  E +I
Sbjct: 360 AGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRI 419

Query: 467 ALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAH 526
              ++HYAC VDLL  +G +++A + + TMP++P + I  SL+  CRIH  +++AE +A 
Sbjct: 420 EPKLKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVAE 479

Query: 527 QLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            + E EPEN   Y LL+ + +E+  W    ++   +  +GL ++ G S IE
Sbjct: 480 MVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKVGGRGLRENTGCSWIE 530



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 99/353 (28%), Positives = 187/353 (52%), Gaps = 11/353 (3%)

Query: 3   SKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHF-GLQLHCTALKSGSDA 61
           S   Y++ + L+ + +   G   ++  L SV+ AC   Q+H  F G  +H  ++++G  +
Sbjct: 62  SNGLYDKAVELFVR-MWLEGQELDSTTLLSVMPACV--QSHYSFIGGVVHGYSVRTGLIS 118

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           +  + N+L+ MY+  S   S  ++F  M  ++ +SW ++I  +T+ G + +   +F+EM 
Sbjct: 119 ETSLGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMG 178

Query: 122 LCGFVLKAELLAGIISLCSQIGE--LELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH 179
           L G  ++ ++ A   +L +  G   L+ G+ +H   I +G  E  + V+ AL+++Y KC 
Sbjct: 179 LEG--IRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNG-IEEVLPVANALMEMYVKCG 235

Query: 180 HWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLL 239
           +   A  +F+ +  ++ +SW  +I G   S   +    LF  M  + ++P  VT+  +L 
Sbjct: 236 YMEEARFIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQ-LRPNAVTMACILP 294

Query: 240 ACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVV 299
           A A L  L  G+ +H YA   G+  D+ ++ AL+ MY +C  AL  AR +F+    K+++
Sbjct: 295 AAASLSSLERGREMHAYAVRRGYLEDNFVANALVDMYVKCG-ALLLARRLFDMLTNKNLI 353

Query: 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHG 352
            W+ +I GY   G   +A+ LF +M+   I+P++ +  AIL +C+       G
Sbjct: 354 SWTIMIAGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEG 406



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 83/190 (43%), Gaps = 2/190 (1%)

Query: 23  LYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESA 82
           L  N   +  ++ A A   + +  G ++H  A++ G   D  ++N+L+ MY K      A
Sbjct: 282 LRPNAVTMACILPAAASLSSLER-GREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLA 340

Query: 83  YQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQI 142
            +LFD +  ++ ISW  +I  +  +G    ++ +F +M   G    A   + I+  CS  
Sbjct: 341 RRLFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHS 400

Query: 143 GELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS-WTA 201
           G  + G +    +  +   E  +     ++DL     +   A    E M I  + S W +
Sbjct: 401 GLRDEGWRFFNAMRNEHRIEPKLKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVS 460

Query: 202 MISGCIDSQN 211
           ++ GC   +N
Sbjct: 461 LLRGCRIHRN 470


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 200/574 (34%), Positives = 333/574 (58%), Gaps = 10/574 (1%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           ++ + L +Y +     G+  ++  + SV++AC    + +  G  +H    K G   D ++
Sbjct: 196 YWNEALEIYYR-FRNLGVVPDSYTMSSVLRACGGLGSVEE-GDIIHGLIEKIGIKKDVIV 253

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
           +N L+SMY KF+      ++FD+M  RD +SWN++I  ++Q G Y  S+++F EM     
Sbjct: 254 NNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMV---N 310

Query: 126 VLKAELLA--GIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
             K +LL    I+  C  +G+LE G+ +H  +I  G +E     S  L+++Y+KC + L 
Sbjct: 311 QFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSG-YECDTTASNILINMYAKCGNLLA 369

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
           +  VF  M  ++ VSW +MI+  I + ++D  + LF+ M+ + VKP  VT  ++L    +
Sbjct: 370 SQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTD-VKPDSVTYVMLLSMSTQ 428

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
           L DL  GK +H      GF+ +  +S  L+ MY +C E +  +  +FE  K +D++ W++
Sbjct: 429 LGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGE-MGDSLKVFENMKARDIITWNT 487

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           II     S D +  +++ SRMR E + P+  T+L+IL  C+  +    G  +H  I K G
Sbjct: 488 IIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLG 547

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
           L  DV +GN L+ MYSKCGS+ +S Q+F  M  +D V+WT LIS  G +G G++A++ F 
Sbjct: 548 LESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFG 607

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS 483
           EM+ +G+ PD +  +AI+ AC+H+GLV+E    F+ + K+ KI   IEHYAC VDLL +S
Sbjct: 608 EMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRS 667

Query: 484 GKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLS 543
             ++ A   + +MP+KP + I  +L+SACR+ G  E+AE ++ ++IE  P++   Y L+S
Sbjct: 668 ALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVS 727

Query: 544 MVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            + +  G W     + + ++A+GL K  G S +E
Sbjct: 728 NIYAALGKWDQVRSIRKSIKARGLKKDPGCSWME 761



 Score =  276 bits (705), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 175/553 (31%), Positives = 287/553 (51%), Gaps = 23/553 (4%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
            + + L LY  E     L  +T   PSVI ACA     +     +H   L  G  +D  I
Sbjct: 95  LFSEALSLY-SETQRIRLQPDTYTFPSVINACAGLLDFE-MAKSIHDRVLDMGFGSDLYI 152

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
            N+LI MY +F+  + A ++F+EMP RD +SWNS+I+ +  NG++  +LE++      G 
Sbjct: 153 GNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGV 212

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
           V  +  ++ ++  C  +G +E G  IH L+   G  +  V V+  LL +Y K +  +   
Sbjct: 213 VPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIG-IKKDVIVNNGLLSMYCKFNGLIDGR 271

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
           R+F++MV+R+ VSW  MI G      Y+  I LF  M  +  KP  +T+T +L AC  L 
Sbjct: 272 RIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACGHLG 330

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
           DL  GK +H Y    G++ D   S  L++MY +C   L  ++ +F   K KD V W+S+I
Sbjct: 331 DLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLL-ASQEVFSGMKCKDSVSWNSMI 389

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
             Y Q+G   EAMKLF  M+ + ++P+SVT + +LS  T+   L  G  +HC + K G N
Sbjct: 390 NVYIQNGSFDEAMKLFKMMKTD-VKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFN 448

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            ++ + N L++MY+KCG +  S ++F  M ARD ++W T+I+           L++   M
Sbjct: 449 SNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRM 508

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLLGK 482
           +  GV PD  T+L+IL  C+     ++ + +   + K   E  + +        +++  K
Sbjct: 509 RTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVG----NVLIEMYSK 564

Query: 483 SGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA-----EMLAHQLIEAEPENAA 537
            G + ++ +V   M  K      ++L+SAC ++G  + A     EM A  ++   P++ A
Sbjct: 565 CGSLRNSFQVFKLMKTKDVV-TWTALISACGMYGEGKKAVRAFGEMEAAGIV---PDHVA 620

Query: 538 NYTLLSMVCSESG 550
            +  +   CS SG
Sbjct: 621 -FVAIIFACSHSG 632



 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 143/479 (29%), Positives = 250/479 (52%), Gaps = 13/479 (2%)

Query: 25  SNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQ 84
           S   +  S+ +A A A T      +LH   +  G     + S  LI+ YA F  P S++ 
Sbjct: 11  SRQTLFSSISRALASAATTTQLH-KLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFS 69

Query: 85  LFD-EMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIG 143
           +F    P  +   WNSII   T NG +  +L ++ E               +I+ C+ + 
Sbjct: 70  VFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLL 129

Query: 144 ELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMI 203
           + E+ + IH  V+ D  F   +++  AL+D+Y + +    A +VFE+M +R+ VSW ++I
Sbjct: 130 DFEMAKSIHDRVL-DMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLI 188

Query: 204 SGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFD 263
           SG   +  ++  ++++   +  GV P   T++ VL AC  L  +  G  IHG     G  
Sbjct: 189 SGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIK 248

Query: 264 FDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSR 323
            D  ++  L+ MYC+    L   R IF++  ++D V W+++I GYSQ G   E++KLF  
Sbjct: 249 KDVIVNNGLLSMYCK-FNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFME 307

Query: 324 MRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS 383
           M + + +P+ +T+ +IL +C     L  G  VH Y++ +G   D +  N L+NMY+KCG+
Sbjct: 308 M-VNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGN 366

Query: 384 ITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
           + +S ++F+ M  +D VSW ++I+ Y  +G  +EA++LF +M ++ V+PD++T + +LS 
Sbjct: 367 LLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSM 425

Query: 444 CNHAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
               G +   + L  ++ K      I ++       VD+  K G++ D+ KV   M  +
Sbjct: 426 STQLGDLHLGKELHCDLAKMGFNSNIVVS----NTLVDMYAKCGEMGDSLKVFENMKAR 480



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 121/409 (29%), Positives = 199/409 (48%), Gaps = 7/409 (1%)

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS-WTAMISGCID 208
           ++H+L+I  G    SV  S  L+  Y+       +  VF      N V  W ++I     
Sbjct: 34  KLHSLIITLG-LHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTH 92

Query: 209 SQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHL 268
           +  +   + L+   QR  ++P   T   V+ ACA L D    K+IH      GF  D ++
Sbjct: 93  NGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYI 152

Query: 269 SAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER 328
             AL+ MYC   + L  AR +FE   ++DVV W+S+I GY+ +G  +EA++++ R R   
Sbjct: 153 GNALIDMYCRFND-LDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLG 211

Query: 329 IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSH 388
           + P+S T+ ++L +C     +  G  +H  I K G+  DV + N L++MY K   +    
Sbjct: 212 VVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGR 271

Query: 389 QIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG 448
           +IF++M  RD VSW T+I GY   G  EE+++LF+EM     +PD +T+ +IL AC H G
Sbjct: 272 RIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACGHLG 330

Query: 449 LVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSL 508
            + E     ++ M               +++  K G +  + +V S M  K S    +S+
Sbjct: 331 DL-EFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVS-WNSM 388

Query: 509 VSACRIHGRLEVAEMLAHQL-IEAEPENAANYTLLSMVCSESGNWLGAE 556
           ++    +G  + A  L   +  + +P++     LLSM        LG E
Sbjct: 389 INVYIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKE 437


>gi|225452956|ref|XP_002279032.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39350
           [Vitis vinifera]
 gi|296082987|emb|CBI22288.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 204/571 (35%), Positives = 331/571 (57%), Gaps = 5/571 (0%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
             L L+ Q L     + +    P VIKAC      +  G  +H   + SG D+D  + NS
Sbjct: 105 DALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPE-MGALIHARTVMSGFDSDAFVQNS 163

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           L++MY    + E A ++FD M  R  +SWN++IN + +NG    +L +F  M   G    
Sbjct: 164 LMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPD 223

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
              +  ++ +CS + ELE+GR++HALV V    E  + V  +LLD+Y+KC +   A  +F
Sbjct: 224 CATVVSVLPVCSYLKELEVGRRVHALVEVKNLGE-DISVWNSLLDMYAKCGNMDEAQMIF 282

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
            +M  R+ VSWT M++G I + +  + + L + MQ E VKP  VTL  VL ACA L  L+
Sbjct: 283 YEMDKRDVVSWTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSACASLYSLK 342

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
           +G+ +HG+A     + +  +  AL+ MY +C       R+ F +T  +    W++II G 
Sbjct: 343 HGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRV-FSKTSKQRTAPWNAIISGC 401

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
             +G   +A++LF +M +E ++PN  TL ++L +    + L     +H Y++++G    +
Sbjct: 402 IHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRI 461

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARD--FVSWTTLISGYGFHGYGEEALQLFLEMQ 426
            +   L+++YSKCGS+ S+H IFN +  +D   ++W+ +I+GYG HG+GE A+ LF +M 
Sbjct: 462 EVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAISLFDQMV 521

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
           +SGV+P+ IT  +IL AC+HAGLV E   LF  ++++ +++L  +HY C +DLLG++G++
Sbjct: 522 QSGVKPNEITFTSILHACSHAGLVDEGLGLFKFMLEDNQMSLRTDHYTCVIDLLGRAGRL 581

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546
           E+A +++ TM  +P+  +  +L+ +C IH  +E+ E+ A  L E EP N  NY LL+ + 
Sbjct: 582 EEAYELIRTMAFRPNHAVWGALLGSCVIHENVELGEVAAKWLFELEPGNTGNYVLLANIY 641

Query: 547 SESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           S  G W  AE V  +M   GL K+   S IE
Sbjct: 642 SAVGRWRDAEHVRLMMNNIGLRKTPAHSLIE 672



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 149/543 (27%), Positives = 269/543 (49%), Gaps = 28/543 (5%)

Query: 23  LYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPV---ISNSLISMYAKFSKP 79
           L + TA   S+++ C   ++  +   Q+H   +  G  + P    + +SL + YA F   
Sbjct: 14  LLTATARYQSLLQRCTSRKSIPNTK-QIHAHTITLGLLSSPYSHHLLSSLAAAYAMFGCA 72

Query: 80  ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG----------FVLKA 129
             A +LFDE+      SWN++I  +T +G    +L +F +M   G          FV+KA
Sbjct: 73  PHARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKA 132

Query: 130 ELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
                    C      E+G  IHA  ++ G F+   FV  +L+ +Y  C    +A RVF+
Sbjct: 133 ---------CGDYLLPEMGALIHARTVMSG-FDSDAFVQNSLMAMYMNCGEMEVARRVFD 182

Query: 190 QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
            M  R  VSW  MI+G   +      + +F  M  +G++P   T+  VL  C+ L++L  
Sbjct: 183 LMRERTLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEV 242

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
           G+ +H          D  +  +L+ MY +C   +  A++IF     +DVV W++++ GY 
Sbjct: 243 GRRVHALVEVKNLGEDISVWNSLLDMYAKCGN-MDEAQMIFYEMDKRDVVSWTTMMNGYI 301

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
            +GD   A+ L   M+ E ++PN VTL ++LS+C     L HG  +H + ++  L  +V 
Sbjct: 302 LNGDARSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVI 361

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
           +  AL++MY+KC ++  S ++F++ + +    W  +ISG   +G   +A++LF +M    
Sbjct: 362 VETALIDMYAKCNNVNLSFRVFSKTSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEA 421

Query: 430 VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
           V+P+  T+ ++L A      +++A  +   +++   ++  IE     +D+  K G +E A
Sbjct: 422 VDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLS-RIEVATILIDIYSKCGSLESA 480

Query: 490 CKVVSTMPMKPSTRIL-SSLVSACRIHGRLEVAEMLAHQLIEAE-PENAANYTLLSMVCS 547
             + + +P K    I  S++++   +HG  E A  L  Q++++    N   +T +   CS
Sbjct: 481 HNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHACS 540

Query: 548 ESG 550
            +G
Sbjct: 541 HAG 543


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 200/574 (34%), Positives = 333/574 (58%), Gaps = 10/574 (1%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           ++ + L +Y +     G+  ++  + SV++AC    + +  G  +H    K G   D ++
Sbjct: 255 YWNEALEIYYR-FRNLGVVPDSYTMSSVLRACGGLGSVEE-GDIIHGLIEKIGIKKDVIV 312

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
           +N L+SMY KF+      ++FD+M  RD +SWN++I  ++Q G Y  S+++F EM     
Sbjct: 313 NNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMV---N 369

Query: 126 VLKAELLA--GIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
             K +LL    I+  C  +G+LE G+ +H  +I  G +E     S  L+++Y+KC + L 
Sbjct: 370 QFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSG-YECDTTASNILINMYAKCGNLLA 428

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
           +  VF  M  ++ VSW +MI+  I + ++D  + LF+ M+ + VKP  VT  ++L    +
Sbjct: 429 SQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTD-VKPDSVTYVMLLSMSTQ 487

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
           L DL  GK +H      GF+ +  +S  L+ MY +C E +  +  +FE  K +D++ W++
Sbjct: 488 LGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGE-MGDSLKVFENMKARDIITWNT 546

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           II     S D +  +++ SRMR E + P+  T+L+IL  C+  +    G  +H  I K G
Sbjct: 547 IIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLG 606

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
           L  DV +GN L+ MYSKCGS+ +S Q+F  M  +D V+WT LIS  G +G G++A++ F 
Sbjct: 607 LESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFG 666

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS 483
           EM+ +G+ PD +  +AI+ AC+H+GLV+E    F+ + K+ KI   IEHYAC VDLL +S
Sbjct: 667 EMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRS 726

Query: 484 GKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLS 543
             ++ A   + +MP+KP + I  +L+SACR+ G  E+A+ ++ ++IE  P++   Y L+S
Sbjct: 727 ALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAQRVSERIIELNPDDTGYYVLVS 786

Query: 544 MVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            V +  G W     + + ++A+GL K  G S +E
Sbjct: 787 NVYAALGKWDQVRSIRKSIKARGLKKDPGCSWME 820



 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 175/553 (31%), Positives = 287/553 (51%), Gaps = 23/553 (4%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
            + + L LY  E     L  +T   PSVI ACA     +     +H   L  G  +D  I
Sbjct: 154 LFSEALSLY-SETQRIRLQPDTYTFPSVINACAGLLDFE-MAKSIHDRVLXMGFGSDLYI 211

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
            N+LI MY +F+  + A ++F+EMP RD +SWNS+I+ +  NG++  +LE++      G 
Sbjct: 212 GNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGV 271

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
           V  +  ++ ++  C  +G +E G  IH L+   G  +  V V+  LL +Y K +  +   
Sbjct: 272 VPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIG-IKKDVIVNNGLLSMYCKFNGLIDGR 330

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
           R+F++MV+R+ VSW  MI G      Y+  I LF  M  +  KP  +T+T +L AC  L 
Sbjct: 331 RIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACGHLG 389

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
           DL  GK +H Y    G++ D   S  L++MY +C   L  ++ +F   K KD V W+S+I
Sbjct: 390 DLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLL-ASQEVFSGMKCKDSVSWNSMI 448

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
             Y Q+G   EAMKLF  M+ + ++P+SVT + +LS  T+   L  G  +HC + K G N
Sbjct: 449 NVYIQNGSFDEAMKLFKMMKTD-VKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFN 507

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            ++ + N L++MY+KCG +  S ++F  M ARD ++W T+I+           L++   M
Sbjct: 508 SNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRM 567

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLLGK 482
           +  GV PD  T+L+IL  C+     ++ + +   + K   E  + +        +++  K
Sbjct: 568 RTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVG----NVLIEMYSK 623

Query: 483 SGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA-----EMLAHQLIEAEPENAA 537
            G + ++ +V   M  K      ++L+SAC ++G  + A     EM A  ++   P++ A
Sbjct: 624 CGSLRNSFQVFKLMKTKDVV-TWTALISACGMYGEGKKAVRAFGEMEAAGIV---PDHVA 679

Query: 538 NYTLLSMVCSESG 550
            +  +   CS SG
Sbjct: 680 -FVAIIFACSHSG 691



 Score =  229 bits (584), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 143/479 (29%), Positives = 250/479 (52%), Gaps = 13/479 (2%)

Query: 25  SNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQ 84
           S   +  S+ +A A A T      +LH   +  G     + S  LI+ YA F  P S++ 
Sbjct: 70  SRQTLFSSISRALASAATTTQLH-KLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFS 128

Query: 85  LFD-EMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIG 143
           +F    P  +   WNSII   T NG +  +L ++ E               +I+ C+ + 
Sbjct: 129 VFRLASPSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLL 188

Query: 144 ELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMI 203
           + E+ + IH  V+  G F   +++  AL+D+Y + +    A +VFE+M +R+ VSW ++I
Sbjct: 189 DFEMAKSIHDRVLXMG-FGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLI 247

Query: 204 SGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFD 263
           SG   +  ++  ++++   +  GV P   T++ VL AC  L  +  G  IHG     G  
Sbjct: 248 SGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIK 307

Query: 264 FDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSR 323
            D  ++  L+ MYC+    L   R IF++  ++D V W+++I GYSQ G   E++KLF  
Sbjct: 308 KDVIVNNGLLSMYCK-FNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFME 366

Query: 324 MRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS 383
           M + + +P+ +T+ +IL +C     L  G  VH Y++ +G   D +  N L+NMY+KCG+
Sbjct: 367 M-VNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGN 425

Query: 384 ITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
           + +S ++F+ M  +D VSW ++I+ Y  +G  +EA++LF +M ++ V+PD++T + +LS 
Sbjct: 426 LLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSM 484

Query: 444 CNHAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
               G +   + L  ++ K      I ++       VD+  K G++ D+ KV   M  +
Sbjct: 485 STQLGDLXLGKELHCDLAKMGFNSNIVVS----NTLVDMYAKCGEMGDSLKVFENMKAR 539



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 127/455 (27%), Positives = 214/455 (47%), Gaps = 10/455 (2%)

Query: 104 FTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFEL 163
           +T    + R ++  R ++ C    +  L + I    +         ++H+L+I  G    
Sbjct: 50  YTSTKLFSRVMKTLRVLHECS---RQTLFSSISRALASAATTTQLHKLHSLIITLG-LHH 105

Query: 164 SVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV-SWTAMISGCIDSQNYDTGIDLFRAM 222
           SV  S  L+  Y+       +  VF      N V  W ++I     +  +   + L+   
Sbjct: 106 SVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYXWNSIIRALTHNGLFSEALSLYSET 165

Query: 223 QREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEA 282
           QR  ++P   T   V+ ACA L D    K+IH      GF  D ++  AL+ MYC   + 
Sbjct: 166 QRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFND- 224

Query: 283 LHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSS 342
           L  AR +FE   ++DVV W+S+I GY+ +G  +EA++++ R R   + P+S T+ ++L +
Sbjct: 225 LDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRA 284

Query: 343 CTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSW 402
           C     +  G  +H  I K G+  DV + N L++MY K   +    +IF++M  RD VSW
Sbjct: 285 CGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSW 344

Query: 403 TTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462
            T+I GY   G  EE+++LF+EM     +PD +T+ +IL AC H G + E     ++ M 
Sbjct: 345 NTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACGHLGDL-EFGKYVHDYMI 402

Query: 463 EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAE 522
                         +++  K G +  + +V S M  K S    +S+++    +G  + A 
Sbjct: 403 TSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVS-WNSMINVYIQNGSFDEAM 461

Query: 523 MLAHQL-IEAEPENAANYTLLSMVCSESGNWLGAE 556
            L   +  + +P++     LLSM        LG E
Sbjct: 462 KLFKMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKE 496


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  368 bits (945), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 198/562 (35%), Positives = 327/562 (58%), Gaps = 4/562 (0%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           +++H  G+  +   +  V+K C         G  +H    K G  +   + N+L++ YAK
Sbjct: 185 RKMHCCGVRPDAYTISCVLK-CIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAK 243

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
            ++ + A  +FD MP+RD ISWNS+I+  T NG Y +++E+F  M+L G  L +  L  +
Sbjct: 244 SNRTKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSV 303

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           +  C+++  L LGR +H   +  G F     ++  LLD+YS C  W    ++F  MV +N
Sbjct: 304 LPACAELHLLFLGRVVHGYSVKTG-FISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKN 362

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
            VSWTAMI+    +  YD    LF+ M  EG +P    +T  L A A    L++GK++HG
Sbjct: 363 VVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHG 422

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
           YA   G +    ++ ALM MY +C   +  A++IF+    KD++ W+++I GYS++   +
Sbjct: 423 YAIRNGMEKVLAVTNALMEMYVKCGN-MEEAKLIFDGVVSKDMISWNTLIGGYSRNNLAN 481

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           EA  LF+ M L+ + PN+VT+  IL +    S L  G  +H Y ++ G   D  + NAL+
Sbjct: 482 EAFSLFTEMLLQ-LRPNAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDFVANALI 540

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           +MY KCG++  + ++F+ ++ ++ +SWT +++GYG HG G +A+ LF +M+ SG+ PDA 
Sbjct: 541 DMYVKCGALLLARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAA 600

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           +  AIL AC+H+GL  E    F+ + KE KI   ++HY C VDLL  +G +++A + + +
Sbjct: 601 SFSAILYACSHSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEAYEFIDS 660

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGA 555
           MP++P + I  SL+  CRIH  +++AE +A ++ E EPEN   Y LL+ + +E+  W   
Sbjct: 661 MPIEPDSSIWVSLLRGCRIHRNVKLAEEVAERVFELEPENTGYYVLLANIYAEAERWEAV 720

Query: 556 EEVWRVMRAKGLSKSYGFSRIE 577
            ++   +  +GL ++ G S IE
Sbjct: 721 RKLKNKIGGRGLRENTGCSWIE 742



 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 158/515 (30%), Positives = 254/515 (49%), Gaps = 21/515 (4%)

Query: 58  GSDA-DPVISNSLISMYAKFSKPESAYQLFDEMP-YRDTISWNSIINCFTQNGFYVRSLE 115
           G D  D V+   L+ MY K    E+A ++FDEMP   D   W ++++ + + G     + 
Sbjct: 123 GRDGMDNVLGQKLVLMYLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVL 182

Query: 116 MFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLY 175
           +FR+M+ CG    A  ++ ++   + +G +E G  +H L+   G F     V  AL+  Y
Sbjct: 183 LFRKMHCCGVRPDAYTISCVLKCIAGLGSIEDGEVVHGLLEKLG-FGSQCAVGNALMAFY 241

Query: 176 SKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLT 235
           +K +    A+ VF+ M  R+ +SW +MISGC  +  YD  I+LF  M  EG +    TL 
Sbjct: 242 AKSNRTKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLL 301

Query: 236 IVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV 295
            VL ACAEL  L  G+ +HGY+   GF     L+  L+ MY  C++       IF     
Sbjct: 302 SVLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSD-WRSTNKIFRNMVQ 360

Query: 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV 355
           K+VV W+++I  Y+++G   +   LF  M LE   P+   + + L +      L HG  V
Sbjct: 361 KNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSV 420

Query: 356 HCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYG 415
           H Y ++ G+   +++ NALM MY KCG++  +  IF+ + ++D +SW TLI GY  +   
Sbjct: 421 HGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLA 480

Query: 416 EEALQLFLEMQESGVEPDAITVLAILSACN-----HAGLVKEAETLFNNVMKEKKIALAI 470
            EA  LF EM    + P+A+T+  IL A         G    A  L    +++  +A A+
Sbjct: 481 NEAFSLFTEMLLQ-LRPNAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDFVANAL 539

Query: 471 EHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL-I 529
                 +D+  K G +  A ++   +  K      + +V+   +HGR   A  L  Q+ +
Sbjct: 540 ------IDMYVKCGALLLARRLFDRLSNKNLIS-WTIMVAGYGMHGRGRDAIALFEQMRV 592

Query: 530 EAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRA 564
                +AA+++ +   CS SG     +E WR   A
Sbjct: 593 SGIAPDAASFSAILYACSHSGL---RDEGWRFFDA 624



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 115/363 (31%), Positives = 184/363 (50%), Gaps = 11/363 (3%)

Query: 133 AGIISLCSQIGELELGRQIHALVIVD--GSFELSVFVSTALLDLYSKCHHWLIALRVFEQ 190
             ++ LCS++  LE G++ H LV     G   +   +   L+ +Y KC     A RVF++
Sbjct: 95  GAVLQLCSEVRSLEGGKRAHFLVRASSLGRDGMDNVLGQKLVLMYLKCGDLENARRVFDE 154

Query: 191 MVIRNEVS-WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
           M   ++V  WTA++SG   + +   G+ LFR M   GV+P   T++ VL   A L  + +
Sbjct: 155 MPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLKCIAGLGSIED 214

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
           G+ +HG     GF     +  ALM  Y +       A ++F+    +DV+ W+S+I G +
Sbjct: 215 GEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRT-KDAILVFDGMPHRDVISWNSMISGCT 273

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
            +G   +A++LF RM LE  E +S TLL++L +C     L  G  VH Y +K G     S
Sbjct: 274 SNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTS 333

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
           + N L++MYS C    S+++IF  M  ++ VSWT +I+ Y   G  ++   LF EM   G
Sbjct: 334 LANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEG 393

Query: 430 VEPDAITVLAILSACNHAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLLGKSGKI 486
             PD   + + L A     L+K  +++    ++   EK +A+       YV    K G +
Sbjct: 394 TRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALMEMYV----KCGNM 449

Query: 487 EDA 489
           E+A
Sbjct: 450 EEA 452


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 191/533 (35%), Positives = 308/533 (57%), Gaps = 4/533 (0%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           GLQ+H  A+  G   D +++N LI MY K S+ + A  +FD M  R+ +SW +++  + Q
Sbjct: 23  GLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRMLERNVVSWTALMCGYLQ 82

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
            G    SL +  EM   G        +  +  C  +G +E G QIH + +  G FE    
Sbjct: 83  EGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQIHGMCVKSG-FEWVSV 141

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           V  A +D+YSKC    +A +VF +M  RN VSW AMI+G     N    + LF+ MQ +G
Sbjct: 142 VGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQG 201

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFD--HHLSAALMHMYCECTEALH 284
             P   T T  L AC  L  +R G  IH      GF     + +++A++ +Y +C   L 
Sbjct: 202 EVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCG-YLF 260

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
            A+ +F+R + K+++ WS++I+G++Q G+L EAM LF ++R      +   L  ++    
Sbjct: 261 EAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLRESVSNVDGFVLSIMMGVFA 320

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
             + +  G  +HCYI+K     D+S+ N++++MY KCG    + ++F+EM  R+ VSWT 
Sbjct: 321 DLALVEQGKQMHCYILKVPSGLDISVANSIIDMYLKCGLTEEAERLFSEMQVRNVVSWTV 380

Query: 405 LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK 464
           +I+GYG HG GE+A+ LF  MQ  G+E D +  LA+LSAC+H+GL++E++  F+ +    
Sbjct: 381 MITGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLALLSACSHSGLIRESQEYFSRLCNNH 440

Query: 465 KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEML 524
           ++   IEHYAC VD+LG++G++++A  ++  M +KP+  I  +L+SACR+HG LE+   +
Sbjct: 441 QMKPNIEHYACMVDILGRAGQLKEAKNLIENMKLKPNEGIWQTLLSACRVHGNLEIGREV 500

Query: 525 AHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
              L   + +N  NY ++S + +E+G W   E V ++++AKGL K  G S +E
Sbjct: 501 GEILFRMDTDNPVNYVMMSNIYAEAGYWKECERVRKLVKAKGLKKEAGQSWVE 553



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 120/425 (28%), Positives = 213/425 (50%), Gaps = 13/425 (3%)

Query: 132 LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM 191
           LA ++  CS+ G  + G Q+HA   V+  F   + ++  L+D+Y KC    +A  VF++M
Sbjct: 7   LAKLLRNCSKNGLFDQGLQVHA-AAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRM 65

Query: 192 VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGK 251
           + RN VSWTA++ G +   N    + L   M   GVKP   T +  L AC  L  + NG 
Sbjct: 66  LERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGM 125

Query: 252 AIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQS 311
            IHG     GF++   +  A + MY +C   +  A  +F +   +++V W+++I G++  
Sbjct: 126 QIHGMCVKSGFEWVSVVGNATIDMYSKCGR-IGMAEQVFNKMPFRNLVSWNAMIAGHTHE 184

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
           G+  +++ LF RM+ +   P+  T  + L +C     +  G  +H  ++  G  F +SI 
Sbjct: 185 GNGRKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRG--FPISIR 242

Query: 372 N----ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
           N    A++++Y+KCG +  + ++F+ +  ++ +SW+ LI G+   G   EA+ LF +++E
Sbjct: 243 NIIASAIVDLYAKCGYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLRE 302

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487
           S    D   +  ++       LV++ + +   ++K     L I      +D+  K G  E
Sbjct: 303 SVSNVDGFVLSIMMGVFADLALVEQGKQMHCYILKVPS-GLDISVANSIIDMYLKCGLTE 361

Query: 488 DACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAH--QLIEAEPENAANYTLLSMV 545
           +A ++ S M ++      + +++    HG  E A  L +  QL   E +  A   LLS  
Sbjct: 362 EAERLFSEMQVRNVVS-WTVMITGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLALLS-A 419

Query: 546 CSESG 550
           CS SG
Sbjct: 420 CSHSG 424



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 151/303 (49%), Gaps = 5/303 (1%)

Query: 231 RVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIF 290
           R  L  +L  C++      G  +H  A   GF FD  ++  L+ MY +C+  +  A  +F
Sbjct: 4   RQRLAKLLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSR-VDLACSVF 62

Query: 291 ERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLS 350
           +R   ++VV W++++ GY Q G+   ++ L   M    ++PN  T    L +C     + 
Sbjct: 63  DRMLERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVE 122

Query: 351 HGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYG 410
           +G+ +H   +K+G  +   +GNA ++MYSKCG I  + Q+FN+M  R+ VSW  +I+G+ 
Sbjct: 123 NGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHT 182

Query: 411 FHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAI 470
             G G ++L LF  MQ  G  PD  T  + L AC   G ++    +  +++  +   ++I
Sbjct: 183 HEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLIT-RGFPISI 241

Query: 471 EHY--ACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
            +   +  VDL  K G + +A KV   +  K      S+L+      G L  A  L  QL
Sbjct: 242 RNIIASAIVDLYAKCGYLFEAQKVFDRIEQKNLIS-WSALIQGFAQEGNLLEAMDLFRQL 300

Query: 529 IEA 531
            E+
Sbjct: 301 RES 303


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 199/572 (34%), Positives = 328/572 (57%), Gaps = 10/572 (1%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           EQ L L+ Q +   G+  N     +V+   A A      G+Q+H   +KSG D+   + N
Sbjct: 175 EQALKLFSQ-MQLEGIKPNPFTFAAVLGGLA-ADGAVEKGVQVHTMVIKSGLDSTIFVGN 232

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           S+++MY+K      A  +FD M  R+ +SWNS+I  F  NG  + + E+F  M L G  L
Sbjct: 233 SMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKL 292

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
              + A +I LC+ I E+   +Q+H  VI +GS +  + + TAL+  YSKC     A ++
Sbjct: 293 TQTIFATVIKLCANIKEMSFAKQLHCQVIKNGS-DFDLNIKTALMVAYSKCSEIDDAFKL 351

Query: 188 FEQM-VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           F  M  ++N VSWTA+ISG + +   D  ++LF  M+REGV+P   T + +L A A +  
Sbjct: 352 FCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAV-- 409

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
             +   IH       ++    +  AL   Y +  +A   A+I FE    KD+V WS+++ 
Sbjct: 410 --SPSQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKI-FELIDEKDIVAWSAMLS 466

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF-LSHGLGVHCYIMKAGLN 365
           GY+Q GD+  A+K+F ++  E +EPN  T  ++L++C   +  +  G   H   +K+G +
Sbjct: 467 GYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFS 526

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
             + + +AL+ MY+K G+I S++++F     RD VSW ++ISGY  HG G+++L++F EM
Sbjct: 527 NALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEM 586

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
           +   +E D IT + ++SAC HAGLV E +  F+ ++K+  I   +EHY+C VDL  ++G 
Sbjct: 587 RSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGM 646

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV 545
           +E A  +++ MP      I  +L++ACR+H  +++ E+ A +LI  +P+++A Y LLS +
Sbjct: 647 LEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNI 706

Query: 546 CSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            + +GNW    +V ++M  K + K  G+S IE
Sbjct: 707 YATAGNWQERAKVRKLMDMKKVKKEAGYSWIE 738



 Score =  241 bits (614), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 148/475 (31%), Positives = 244/475 (51%), Gaps = 6/475 (1%)

Query: 18  LHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFS 77
           L  SG  ++ + L  V+K C      +  G Q+HC  +K G   D  +  SL+ MY K  
Sbjct: 83  LRRSGSPTDGSSLSCVLKVCG-CLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTE 141

Query: 78  KPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS 137
             E   ++FDEM  ++ +SW S++  + QNG   ++L++F +M L G        A ++ 
Sbjct: 142 SVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLG 201

Query: 138 LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197
             +  G +E G Q+H +VI  G  + ++FV  +++++YSK      A  VF+ M  RN V
Sbjct: 202 GLAADGAVEKGVQVHTMVIKSG-LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAV 260

Query: 198 SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
           SW +MI+G + +       +LF  M+ EGVK T+     V+  CA ++++   K +H   
Sbjct: 261 SWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQV 320

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
              G DFD ++  ALM  Y +C+E     ++      V++VV W++II GY Q+G    A
Sbjct: 321 IKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRA 380

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
           M LF +MR E + PN  T   IL++    S       +H  ++K       S+G AL + 
Sbjct: 381 MNLFCQMRREGVRPNHFTYSTILTANAAVSPSQ----IHALVVKTNYENSPSVGTALSDS 436

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           YSK G    + +IF  +  +D V+W+ ++SGY   G  E A+++FL++ + GVEP+  T 
Sbjct: 437 YSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTF 496

Query: 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKV 492
            ++L+AC       E    F++   +   + A+   +  V +  K G IE A +V
Sbjct: 497 SSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEV 551



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 111/361 (30%), Positives = 188/361 (52%), Gaps = 3/361 (0%)

Query: 84  QLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIG 143
           QLFDE P +     N ++  F++N     +L +F  +   G       L+ ++ +C  + 
Sbjct: 47  QLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLF 106

Query: 144 ELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMI 203
           +  +G+Q+H   I  G  E  V V T+L+D+Y K        RVF++M ++N VSWT+++
Sbjct: 107 DRIVGKQVHCQCIKCGFVE-DVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLL 165

Query: 204 SGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFD 263
           +G   +   +  + LF  MQ EG+KP   T   VL   A    +  G  +H      G D
Sbjct: 166 AGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLD 225

Query: 264 FDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSR 323
               +  ++++MY + +  +  A+ +F+  + ++ V W+S+I G+  +G   EA +LF R
Sbjct: 226 STIFVGNSMVNMYSK-SLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYR 284

Query: 324 MRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS 383
           MRLE ++        ++  C     +S    +HC ++K G +FD++I  ALM  YSKC  
Sbjct: 285 MRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSE 344

Query: 384 ITSSHQIFNEM-AARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILS 442
           I  + ++F  M   ++ VSWT +ISGY  +G  + A+ LF +M+  GV P+  T   IL+
Sbjct: 345 IDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILT 404

Query: 443 A 443
           A
Sbjct: 405 A 405



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 171/328 (52%), Gaps = 17/328 (5%)

Query: 208 DSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
           + QN +  ++LF  ++R G      +L+ VL  C  L D   GK +H     CGF  D  
Sbjct: 70  NDQNKE-ALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFDRIVGKQVHCQCIKCGFVEDVS 128

Query: 268 LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
           +  +L+ MY + TE++     +F+  +VK+VV W+S++ GY Q+G   +A+KLFS+M+LE
Sbjct: 129 VGTSLVDMYMK-TESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLE 187

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
            I+PN  T  A+L        +  G+ VH  ++K+GL+  + +GN+++NMYSK   ++ +
Sbjct: 188 GIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDA 247

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHA 447
             +F+ M  R+ VSW ++I+G+  +G   EA +LF  M+  GV+        ++  C + 
Sbjct: 248 KAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANI 307

Query: 448 GLVKEAETLFNNVMKEK-------KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKP 500
             +  A+ L   V+K         K AL + +  C         +I+DA K+   M    
Sbjct: 308 KEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKC--------SEIDDAFKLFCMMHGVQ 359

Query: 501 STRILSSLVSACRIHGRLEVAEMLAHQL 528
           +    ++++S    +GR + A  L  Q+
Sbjct: 360 NVVSWTAIISGYVQNGRTDRAMNLFCQM 387


>gi|147819295|emb|CAN68962.1| hypothetical protein VITISV_019277 [Vitis vinifera]
          Length = 676

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 203/571 (35%), Positives = 330/571 (57%), Gaps = 5/571 (0%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
             L L+ Q L     + +    P VIKAC      +  G  +H   + SG D+D  + NS
Sbjct: 105 DALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPE-MGALIHARTVMSGFDSDAFVQNS 163

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           L++MY    + E A ++FD M  R  +SWN++IN + +NG    +L +F  M   G    
Sbjct: 164 LMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPD 223

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
              +  ++ +CS + ELE+GR++HALV V    E  + V  +LLD+Y+KC +   A  +F
Sbjct: 224 CATVVSVLPVCSYLKELEVGRRVHALVEVKNLGE-DISVWNSLLDMYAKCGNMDEAQMIF 282

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
            +M  R+ VSWT M++G I + +  + + L + MQ E VKP  VTL  VL ACA L  L+
Sbjct: 283 YEMDKRDVVSWTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSACASLYSLK 342

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
           +G+ +HG+A     + +  +  AL+ MY +C       R+ F +   +    W++II G 
Sbjct: 343 HGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRV-FSKXSKQRTAPWNAIISGC 401

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
             +G   +A++LF +M +E ++PN  TL ++L +    + L     +H Y++++G    +
Sbjct: 402 IHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRI 461

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARD--FVSWTTLISGYGFHGYGEEALQLFLEMQ 426
            +   L+++YSKCGS+ S+H IFN +  +D   ++W+ +I+GYG HG+GE A+ LF +M 
Sbjct: 462 EVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAISLFDQMV 521

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
           +SGV+P+ IT  +IL AC+HAGLV E   LF  ++++ +++L  +HY C +DLLG++G++
Sbjct: 522 QSGVKPNEITFTSILHACSHAGLVDEGLGLFKFMLEDNQMSLRTDHYTCVIDLLGRAGRL 581

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546
           E+A +++ TM  +P+  +  +L+ +C IH  +E+ E+ A  L E EP N  NY LL+ + 
Sbjct: 582 EEAYELIRTMAFRPNHAVWGALLGSCVIHENVELGEVAAKWLFELEPGNTGNYVLLANIY 641

Query: 547 SESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           S  G W  AE V  +M   GL K+   S IE
Sbjct: 642 SAVGRWRDAEHVRLMMNNIGLRKTPAHSLIE 672



 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 148/543 (27%), Positives = 268/543 (49%), Gaps = 28/543 (5%)

Query: 23  LYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPV---ISNSLISMYAKFSKP 79
           L + TA   S+++ C   ++  +   Q+H   +  G  + P    + +SL + YA     
Sbjct: 14  LLTATARYQSLLQRCTSRKSIPNTK-QIHAHTITLGLLSSPYSHHLLSSLAAAYAMCGCA 72

Query: 80  ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG----------FVLKA 129
             A +LFDE+      SWN++I  +T +G    +L +F +M   G          FV+KA
Sbjct: 73  PHARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKA 132

Query: 130 ELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
                    C      E+G  IHA  ++ G F+   FV  +L+ +Y  C    +A RVF+
Sbjct: 133 ---------CGDYLLPEMGALIHARTVMSG-FDSDAFVQNSLMAMYMNCGEMEVARRVFD 182

Query: 190 QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
            M  R  VSW  MI+G   +      + +F  M  +G++P   T+  VL  C+ L++L  
Sbjct: 183 LMRERTLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEV 242

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
           G+ +H          D  +  +L+ MY +C   +  A++IF     +DVV W++++ GY 
Sbjct: 243 GRRVHALVEVKNLGEDISVWNSLLDMYAKCGN-MDEAQMIFYEMDKRDVVSWTTMMNGYI 301

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
            +GD   A+ L   M+ E ++PN VTL ++LS+C     L HG  +H + ++  L  +V 
Sbjct: 302 LNGDARSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVI 361

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
           +  AL++MY+KC ++  S ++F++ + +    W  +ISG   +G   +A++LF +M    
Sbjct: 362 VETALIDMYAKCNNVNLSFRVFSKXSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEA 421

Query: 430 VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
           V+P+  T+ ++L A      +++A  +   +++   ++  IE     +D+  K G +E A
Sbjct: 422 VDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLS-RIEVATILIDIYSKCGSLESA 480

Query: 490 CKVVSTMPMKPSTRIL-SSLVSACRIHGRLEVAEMLAHQLIEAE-PENAANYTLLSMVCS 547
             + + +P K    I  S++++   +HG  E A  L  Q++++    N   +T +   CS
Sbjct: 481 HNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHACS 540

Query: 548 ESG 550
            +G
Sbjct: 541 HAG 543


>gi|297808809|ref|XP_002872288.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318125|gb|EFH48547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 690

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 204/573 (35%), Positives = 340/573 (59%), Gaps = 6/573 (1%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           +  TL ++K+ L+      ++   P+VIKA   A   +  G  +H   +KSG   D V++
Sbjct: 86  FHDTLKVFKRLLNCPICVPDSFTYPNVIKAYG-ALGREFLGRMIHTVVVKSGHVCDVVVA 144

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           +SL+ MYAKF+  E + Q+FDEMP RD  SWN++I+ F Q G   ++LE+F  M    F 
Sbjct: 145 SSLVGMYAKFNLFEDSVQVFDEMPERDVASWNTVISSFYQRGDAEKALELFGRMERSDFE 204

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
             +  +   IS CS++  LE G++IH   +    FEL  +V++AL+D+Y +C    +A  
Sbjct: 205 PNSVSITVAISACSRLLCLERGKEIHRKYL-KKEFELDEYVNSALVDMYGRCDFLEMARE 263

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VF+QM  ++ V+W +MI G +   +  + ++L   M  EG +P++ TLT +L+AC+  R+
Sbjct: 264 VFQQMRRKSLVAWNSMIRGYVARGDSKSCVELLNRMIIEGTRPSQTTLTSILMACSRSRN 323

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVV-IWSSII 305
           L +GK +HGY      D D +++ +L+ +Y +C E +  A  +F +T+ KDVV  W+ +I
Sbjct: 324 LLHGKFVHGYVIRSVVDADIYINCSLIDLYFKCGE-VKLAETVFLKTQ-KDVVESWNVMI 381

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
            GY   G+  +A+ ++ +M    ++P+ VT  ++LS+C++ + L  G  +H  I ++ L 
Sbjct: 382 SGYVSVGNWFKAVDVYDQMVSVGVQPDIVTFTSVLSTCSQLAALEKGKQIHLSISESRLE 441

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            D  + +AL++MYSKCG++  + +IFN +  +D VSWT +IS YG HG   EAL  F EM
Sbjct: 442 TDELLLSALLDMYSKCGNVKEASRIFNSIPKKDVVSWTVMISAYGSHGQPREALYHFDEM 501

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
           Q+ GV+PD +T LA+LSAC HAGL+ E    F+ +  +  I  +IE Y+C +D+LG++G+
Sbjct: 502 QKFGVKPDGVTFLAVLSACGHAGLIDEGVKYFSQMRSKYGIEASIEQYSCLIDILGRAGR 561

Query: 486 IEDACKVVSTMP-MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSM 544
           + +A  ++   P  + +  +LS+L  AC +H    +   +A  L+E  P++A+ YT+L  
Sbjct: 562 LLEAYGILQQKPETRDNAELLSTLFCACCLHRDHLLGYTIAKLLVEKYPDDASTYTVLFN 621

Query: 545 VCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           + +   +W  A+ V   M+  G+ K  G S IE
Sbjct: 622 LYASGESWDAAKRVRLKMKEVGMRKKPGCSWIE 654



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 162/324 (50%), Gaps = 14/324 (4%)

Query: 237 VLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK 296
           +L  C   + LR  K +H      G   D  L  +L+++Y  C +    AR++FE   ++
Sbjct: 9   LLRECTNTKSLRQAKLVHQRILTVGLRSDVVLCKSLINVYFACKDHC-SARLVFENIDIR 67

Query: 297 -DVVIWSSIIRGYSQSGDLSEAMKLFSR-MRLERIEPNSVTLLAILSS--CTRQSFLSHG 352
            DV IW+S++ GYS++    + +K+F R +      P+S T   ++ +     + FL  G
Sbjct: 68  SDVYIWNSLVSGYSKNSMFHDTLKVFKRLLNCPICVPDSFTYPNVIKAYGALGREFL--G 125

Query: 353 LGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFH 412
             +H  ++K+G   DV + ++L+ MY+K      S Q+F+EM  RD  SW T+IS +   
Sbjct: 126 RMIHTVVVKSGHVCDVVVASSLVGMYAKFNLFEDSVQVFDEMPERDVASWNTVISSFYQR 185

Query: 413 GYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEH 472
           G  E+AL+LF  M+ S  EP+++++   +SAC+    ++  + +    +K++     ++ 
Sbjct: 186 GDAEKALELFGRMERSDFEPNSVSITVAISACSRLLCLERGKEIHRKYLKKE---FELDE 242

Query: 473 Y--ACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLE-VAEMLAHQLI 529
           Y  +  VD+ G+   +E A +V   M  K S    +S++      G  +   E+L   +I
Sbjct: 243 YVNSALVDMYGRCDFLEMAREVFQQMRRK-SLVAWNSMIRGYVARGDSKSCVELLNRMII 301

Query: 530 EAEPENAANYTLLSMVCSESGNWL 553
           E    +    T + M CS S N L
Sbjct: 302 EGTRPSQTTLTSILMACSRSRNLL 325



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 3/169 (1%)

Query: 333 SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFN 392
           S  LL++L  CT    L     VH  I+  GL  DV +  +L+N+Y  C    S+  +F 
Sbjct: 3   SSKLLSLLRECTNTKSLRQAKLVHQRILTVGLRSDVVLCKSLINVYFACKDHCSARLVFE 62

Query: 393 EMAAR-DFVSWTTLISGYGFHGYGEEALQLFLEMQESGV-EPDAITVLAILSACNHAGLV 450
            +  R D   W +L+SGY  +    + L++F  +    +  PD+ T   ++ A    G  
Sbjct: 63  NIDIRSDVYIWNSLVSGYSKNSMFHDTLKVFKRLLNCPICVPDSFTYPNVIKAYGALGRE 122

Query: 451 KEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
                +   V+K   +   +   +  V +  K    ED+ +V   MP +
Sbjct: 123 FLGRMIHTVVVKSGHVCDVVVA-SSLVGMYAKFNLFEDSVQVFDEMPER 170


>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
          Length = 746

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 205/578 (35%), Positives = 327/578 (56%), Gaps = 5/578 (0%)

Query: 1   MVSKHFY-EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGS 59
           M S+  Y E+ L ++      SG + N  +L SVI+AC      +  G QLH   ++SG 
Sbjct: 124 MYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEK-GAQLHGFVVRSGF 182

Query: 60  DADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFRE 119
           D D  +  SLI  Y+K    E A  +FD++  +  ++W +II  +T+ G    SLE+F +
Sbjct: 183 DQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQ 242

Query: 120 MYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH 179
           M     V    +++ ++S CS +  LE G+QIHA V+  G+ E+ V V   L+D Y+KC+
Sbjct: 243 MRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGT-EMDVSVVNVLIDFYTKCN 301

Query: 180 HWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLL 239
                 ++F+QMV++N +SWT MISG + +      + LF  M R G KP     T VL 
Sbjct: 302 RVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLT 361

Query: 240 ACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVV 299
           +C     L  G+ +H Y      + D  +   L+ MY + +  L  A+ +F+    ++V+
Sbjct: 362 SCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAK-SNLLIDAKKVFDVMAEQNVI 420

Query: 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
            ++++I GYS    LSEA++LF  MR+   +PN  T  A++++ +  + L HG   H  +
Sbjct: 421 SYNAMIEGYSSQEKLSEALELFHEMRVRLQKPNEFTFAALITAASNLASLRHGQQFHNQL 480

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEAL 419
           +K GL+F   + NAL++MY+KCGSI  + ++FN    RD V W ++IS +  HG  EEAL
Sbjct: 481 VKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEAL 540

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479
            +F EM + G++P+ +T +A+LSAC+HAG V++    FN+ M    I    EHYAC V L
Sbjct: 541 GMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNS-MPGFGIKPGTEHYACVVSL 599

Query: 480 LGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANY 539
           LG+SGK+ +A + +  MP++P+  +  SL+SACRI G +E+ +  A   I  +P+++ +Y
Sbjct: 600 LGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSY 659

Query: 540 TLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            LLS + +  G W   ++V   M +  + K  G S IE
Sbjct: 660 ILLSNIFASKGMWADVKKVRDRMDSSEVVKEPGRSWIE 697



 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 148/505 (29%), Positives = 265/505 (52%), Gaps = 10/505 (1%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           +H   + SG  +D  ++N LI++ +K  + ++A  +FD+MP+++ I+W+S+++ ++Q G+
Sbjct: 71  IHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGY 130

Query: 110 YVRSLEMFREMYL-CGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
              +L +F ++    G      +LA +I  C+Q+G +E G Q+H  V+  G F+  V+V 
Sbjct: 131 SEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSG-FDQDVYVG 189

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
           T+L+D YSK  +   A  VF+Q+  +  V+WT +I+G          ++LF  M+   V 
Sbjct: 190 TSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVV 249

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
           P R  ++ VL AC+ L  L  GK IH Y    G + D  +   L+  Y +C   +   R 
Sbjct: 250 PDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNR-VKAGRK 308

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
           +F++  VK+++ W+++I GY Q+    EAMKLF  M     +P+     ++L+SC  +  
Sbjct: 309 LFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREA 368

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
           L  G  VH Y +KA L  D  + N L++MY+K   +  + ++F+ MA ++ +S+  +I G
Sbjct: 369 LEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEG 428

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468
           Y       EAL+LF EM+    +P+  T  A+++A ++   ++  +   N ++   K+ L
Sbjct: 429 YSSQEKLSEALELFHEMRVRLQKPNEFTFAALITAASNLASLRHGQQFHNQLV---KMGL 485

Query: 469 AIEHYA--CYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA-EMLA 525
               +     VD+  K G IE+A K+ ++   +      +S++S    HG  E A  M  
Sbjct: 486 DFCPFVTNALVDMYAKCGSIEEARKMFNSSIWR-DVVCWNSMISTHAQHGEAEEALGMFR 544

Query: 526 HQLIEAEPENAANYTLLSMVCSESG 550
             + E    N   +  +   CS +G
Sbjct: 545 EMMKEGIQPNYVTFVAVLSACSHAG 569



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 116/230 (50%), Gaps = 12/230 (5%)

Query: 324 MRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS 383
           +++  + P       +L     ++ + H   +H  I+ +GL  D  + N L+N+ SK   
Sbjct: 40  LQIPNLRPKRREFANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILINVCSKSDR 99

Query: 384 ITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ-ESGVEPDAITVLAILS 442
           + ++  +F++M  ++ ++W++++S Y   GY EEAL +F+++Q +SG  P+   + +++ 
Sbjct: 100 VDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIR 159

Query: 443 ACNHAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           AC   G+V++   L   V++   ++ + +        +D   K+G IE+A  V   +  K
Sbjct: 160 ACTQLGVVEKGAQLHGFVVRSGFDQDVYVG----TSLIDFYSKNGNIEEARLVFDQLSEK 215

Query: 500 PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE--PENAANYTLLSMVCS 547
            +    +++++     GR  V+  L  Q+ E    P+     ++LS  CS
Sbjct: 216 TAV-TWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLS-ACS 263


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 198/561 (35%), Positives = 321/561 (57%), Gaps = 4/561 (0%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           E+  +G+ +NT    + ++AC    +    G+Q+H   LKSG   D  ++N+L++MY +F
Sbjct: 150 EMLKAGVVTNTYTFAAALQACE-DSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRF 208

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
            K   A  +F  +  +D ++WNS++  F QNG Y  +LE F ++           +  II
Sbjct: 209 GKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISII 268

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
               ++G L  G++IHA  I +G F+ ++ V   L+D+Y+KC       R F+ M  ++ 
Sbjct: 269 VASGRLGYLLNGKEIHAYAIKNG-FDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDL 327

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           +SWT   +G   ++ Y   ++L R +Q EG+      +  +LLAC  L  L   K IHGY
Sbjct: 328 ISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGY 387

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
               G   D  L   ++ +Y EC    +  RI FE  + KDVV W+S+I  Y  +G  ++
Sbjct: 388 TIRGGLS-DPVLQNTIIDVYGECGIIDYAVRI-FESIECKDVVSWTSMISCYVHNGLANK 445

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
           A+++FS M+   +EP+ VTL++ILS+    S L  G  +H +I++ G   + SI N L++
Sbjct: 446 ALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVD 505

Query: 377 MYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAIT 436
           MY++CGS+  +++IF     R+ + WT +IS YG HGYGE A++LF+ M++  + PD IT
Sbjct: 506 MYARCGSVEDAYKIFTCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHIT 565

Query: 437 VLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
            LA+L AC+H+GLV E ++    +  E ++    EHY C VDLLG+   +E+A ++V +M
Sbjct: 566 FLALLYACSHSGLVNEGKSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSM 625

Query: 497 PMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAE 556
             +P+  +  +L+ ACRIH   E+ E+ A +L+E + +N  NY L+S V + +G W   E
Sbjct: 626 QNEPTPEVWCALLGACRIHSNKEIGEVAAEKLLELDLDNPGNYVLVSNVFAANGRWKDVE 685

Query: 557 EVWRVMRAKGLSKSYGFSRIE 577
           EV   M+  GL+K+ G S IE
Sbjct: 686 EVRMRMKGSGLTKNPGCSWIE 706



 Score =  249 bits (635), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 160/542 (29%), Positives = 289/542 (53%), Gaps = 9/542 (1%)

Query: 11  LHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLI 70
           L +Y++  H  G+  ++   P ++KAC   +     G ++H  A+K G D+   + NSL+
Sbjct: 43  LEMYREMRHL-GVSFDSYTFPVLLKACGIVE-DLFCGAEIHGLAIKYGCDSFVFVVNSLV 100

Query: 71  SMYAKFSKPESAYQLFDEMPYR-DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKA 129
           ++YAK +    A +LFD M  R D +SWNSII+ ++ NG    +L +F EM   G V   
Sbjct: 101 ALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNT 160

Query: 130 ELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
              A  +  C     ++LG QIHA ++  G   L V+V+ AL+ +Y +      A  +F 
Sbjct: 161 YTFAAALQACEDSSFIKLGMQIHAAILKSGRV-LDVYVANALVAMYVRFGKMPEAAVIFG 219

Query: 190 QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
            +  ++ V+W +M++G I +  Y   ++ F  +Q   +KP +V++  +++A   L  L N
Sbjct: 220 NLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLN 279

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
           GK IH YA   GFD +  +   L+ MY +C    +  R  F+    KD++ W++   GY+
Sbjct: 280 GKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGR-AFDLMAHKDLISWTTAAAGYA 338

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
           Q+    +A++L  ++++E ++ ++  + +IL +C   + L     +H Y ++ GL+ D  
Sbjct: 339 QNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLS-DPV 397

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
           + N ++++Y +CG I  + +IF  +  +D VSWT++IS Y  +G   +AL++F  M+E+G
Sbjct: 398 LQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETG 457

Query: 430 VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
           +EPD +T+++ILSA      +K+ + +   +++ K   L        VD+  + G +EDA
Sbjct: 458 LEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIR-KGFILEGSISNTLVDMYARCGSVEDA 516

Query: 490 CKVVSTMPMKPSTRILSSLVSACRIHGRLEVA-EMLAHQLIEAEPENAANYTLLSMVCSE 548
            K+  T     +  + ++++SA  +HG  E A E+      E    +   +  L   CS 
Sbjct: 517 YKIF-TCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYACSH 575

Query: 549 SG 550
           SG
Sbjct: 576 SG 577



 Score =  205 bits (521), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 135/482 (28%), Positives = 250/482 (51%), Gaps = 10/482 (2%)

Query: 72  MYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAEL 131
           MY K      A  +FD+M  R   +WN+++  +  NG  + +LEM+REM   G    +  
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 132 LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM 191
              ++  C  + +L  G +IH L I  G     VFV  +L+ LY+KC+    A ++F++M
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAIKYGCDSF-VFVVNSLVALYAKCNDINGARKLFDRM 119

Query: 192 VIRNE-VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNG 250
            +RN+ VSW ++IS    +      + LF  M + GV     T    L AC +   ++ G
Sbjct: 120 YVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLG 179

Query: 251 KAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQ 310
             IH      G   D +++ AL+ MY    + +  A +IF   + KD+V W+S++ G+ Q
Sbjct: 180 MQIHAAILKSGRVLDVYVANALVAMYVRFGK-MPEAAVIFGNLEGKDIVTWNSMLTGFIQ 238

Query: 311 SGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSI 370
           +G  SEA++ F  ++   ++P+ V++++I+ +  R  +L +G  +H Y +K G + ++ +
Sbjct: 239 NGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILV 298

Query: 371 GNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV 430
           GN L++MY+KC  ++   + F+ MA +D +SWTT  +GY  +    +AL+L  ++Q  G+
Sbjct: 299 GNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGM 358

Query: 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDAC 490
           + DA  + +IL AC     + + + +    ++       +++    +D+ G+ G I+ A 
Sbjct: 359 DVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLSDPVLQN--TIIDVYGECGIIDYAV 416

Query: 491 KVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA---EPENAANYTLLSMVCS 547
           ++  ++  K      +S++S C +H  L    +     ++    EP+     ++LS VCS
Sbjct: 417 RIFESIECKDVVS-WTSMIS-CYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCS 474

Query: 548 ES 549
            S
Sbjct: 475 LS 476


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 200/571 (35%), Positives = 327/571 (57%), Gaps = 5/571 (0%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           +E++L L++Q +H  G+  +   L  ++K C    +    GL  H   +K G      + 
Sbjct: 391 FEESLLLFEQ-MHELGITPDEHALSCLLK-CITCLSCARDGLVAHGYLVKLGFGTQCAVC 448

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           N+LIS YAK +  ++A  +FD MP++DTISWNS+I+  T NG    ++E+F  M++ G  
Sbjct: 449 NALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHE 508

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
           L +  L  ++  C++     +GR +H   +  G       ++ ALLD+YS C  W    +
Sbjct: 509 LDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIG-ETSLANALLDMYSNCSDWHSTNQ 567

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           +F  M  +N VSWTAMI+    +  +D    L + M  +G+KP    +T VL   A    
Sbjct: 568 IFRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDES 627

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L+ GK++HGYA   G +    ++ ALM MY  C   +  AR++F+    KD++ W+++I 
Sbjct: 628 LKQGKSVHGYAIRNGMEKLLPVANALMEMYVNCRN-MEEARLVFDHVTNKDIISWNTLIG 686

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           GYS++   +E+  LFS M L+  +PN+VT+  IL +    S L  G  +H Y ++ G   
Sbjct: 687 GYSRNNFANESFSLFSDMLLQ-FKPNTVTMTCILPAVASISSLERGREIHAYALRRGFLE 745

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           D    NAL++MY KCG++  +  +F+ +  ++ +SWT +I+GYG HG G++A+ LF +M+
Sbjct: 746 DSYTSNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMR 805

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
            SGVEPD  +  AIL AC H+GL  E    FN + KE KI   ++HY C VDLL  +G +
Sbjct: 806 GSGVEPDTASFSAILYACCHSGLTAEGWKFFNAMRKEYKIEPKLKHYTCIVDLLSHTGNL 865

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546
           ++A + + +MP++P + I  SL+  CRIH  +++AE +A ++ + EPEN   Y LL+ + 
Sbjct: 866 KEAFEFIESMPIEPDSSIWVSLLHGCRIHRDVKLAEKVADRVFKLEPENTGYYVLLANIY 925

Query: 547 SESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +E+  W   +++   +  +GL ++ G S IE
Sbjct: 926 AEAERWEAVKKLKNKIGGRGLRENTGCSWIE 956



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 129/444 (29%), Positives = 229/444 (51%), Gaps = 12/444 (2%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           +++ + L++Q +   G+  +   +  V+K C  +      G  +H    K G      ++
Sbjct: 179 FQEGVSLFRQ-MQCCGVSPDAHAVSCVLK-CIASLGSITEGEVIHGLLEKLGLGEACAVA 236

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           N+LI++Y++    E A Q+FD M  RD ISWNS I+ +  NG++ R++++F +M+  G  
Sbjct: 237 NALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTE 296

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSF--------ELSVFVSTALLDLYSKC 178
           + +  +  ++  C+++G   +G+ +H   +  G           +   + + L+ +Y KC
Sbjct: 297 ISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKC 356

Query: 179 HHWLIALRVFEQMVIRNEVS-WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIV 237
                A RVF+ M  +  V  W  ++ G   +  ++  + LF  M   G+ P    L+ +
Sbjct: 357 GDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCL 416

Query: 238 LLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKD 297
           L     L   R+G   HGY    GF     +  AL+  Y + +  +  A ++F+R   +D
Sbjct: 417 LKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAK-SNMIDNAVLVFDRMPHQD 475

Query: 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHC 357
            + W+S+I G + +G  SEA++LF RM ++  E +S TLL++L +C R  +   G  VH 
Sbjct: 476 TISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFVGRVVHG 535

Query: 358 YIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEE 417
           Y +K GL  + S+ NAL++MYS C    S++QIF  MA ++ VSWT +I+ Y   G  ++
Sbjct: 536 YSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAGLFDK 595

Query: 418 ALQLFLEMQESGVEPDAITVLAIL 441
              L  EM   G++PD   V ++L
Sbjct: 596 VAGLLQEMVLDGIKPDVFAVTSVL 619



 Score =  201 bits (512), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 127/400 (31%), Positives = 209/400 (52%), Gaps = 14/400 (3%)

Query: 57  SGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYR--DTISWNSIINCFTQNGFYVRSL 114
           +G     V+   L+  Y K      A  +FDEMP R  D   W S+++ + + G +   +
Sbjct: 124 TGGIIGSVLGKRLVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGV 183

Query: 115 EMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDL 174
            +FR+M  CG    A  ++ ++   + +G +  G  IH L+   G  E +  V+ AL+ L
Sbjct: 184 SLFRQMQCCGVSPDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGE-ACAVANALIAL 242

Query: 175 YSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTL 234
           YS+C     A++VF+ M  R+ +SW + ISG   +  +D  +DLF  M  EG + + VT+
Sbjct: 243 YSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTV 302

Query: 235 TIVLLACAELRDLRNGKAIHGYAYCCGF---------DFDHHLSAALMHMYCECTEALHP 285
             VL ACAEL     GK +HGY+   G            D  L + L+ MY +C + +  
Sbjct: 303 LSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGD-MGS 361

Query: 286 ARIIFERTKVK-DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
           AR +F+    K +V +W+ I+ GY+++ +  E++ LF +M    I P+   L  +L   T
Sbjct: 362 ARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCIT 421

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
             S    GL  H Y++K G     ++ NAL++ Y+K   I ++  +F+ M  +D +SW +
Sbjct: 422 CLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNS 481

Query: 405 LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
           +ISG   +G   EA++LF+ M   G E D+ T+L++L AC
Sbjct: 482 VISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPAC 521



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 127/441 (28%), Positives = 207/441 (46%), Gaps = 34/441 (7%)

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           ++ LC +   LE  R+ HALV       +   +   L+  Y KC     A  VF++M  R
Sbjct: 100 VVQLCGEERSLEAARRAHALVRAGTGGIIGSVLGKRLVLAYLKCGDLGGARMVFDEMPPR 159

Query: 195 --NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKA 252
             +   WT+++S    + ++  G+ LFR MQ  GV P    ++ VL   A L  +  G+ 
Sbjct: 160 VADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKCIASLGSITEGEV 219

Query: 253 IHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSG 312
           IHG     G      ++ AL+ +Y  C   +  A  +F+    +D + W+S I GY  +G
Sbjct: 220 IHGLLEKLGLGEACAVANALIALYSRCG-CMEDAMQVFDSMHARDAISWNSTISGYFSNG 278

Query: 313 DLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV---- 368
               A+ LFS+M  E  E +SVT+L++L +C    F   G  VH Y MK+GL +D+    
Sbjct: 279 WHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQ 338

Query: 369 -----SIGNALMNMYSKCGSITSSHQIFNEMAARDFVS-WTTLISGYGFHGYGEEALQLF 422
                ++G+ L+ MY KCG + S+ ++F+ M ++  V  W  ++ GY      EE+L LF
Sbjct: 339 SGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLF 398

Query: 423 LEMQESGVEPDAITVLAILS-----ACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC-- 475
            +M E G+ PD   +  +L      +C   GLV     +        K+    +   C  
Sbjct: 399 EQMHELGITPDEHALSCLLKCITCLSCARDGLVAHGYLV--------KLGFGTQCAVCNA 450

Query: 476 YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG-RLEVAEMLAHQLIEAEPE 534
            +    KS  I++A  V   MP +  T   +S++S C  +G   E  E+     ++    
Sbjct: 451 LISFYAKSNMIDNAVLVFDRMPHQ-DTISWNSVISGCTSNGLNSEAIELFVRMWMQGHEL 509

Query: 535 NAANYTLLSMV--CSESGNWL 553
           ++   TLLS++  C+ S  W 
Sbjct: 510 DST--TLLSVLPACARSHYWF 528


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 191/557 (34%), Positives = 318/557 (57%), Gaps = 4/557 (0%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           GL  + A L +V+  CA  +     G+++H  A+K G   D  ++NSL+ MY+K      
Sbjct: 129 GLLPDIATLVTVLPVCA-REVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTE 187

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAEL-LAGIISLCS 140
           A  LFD+   ++ +SWN++I      G+   +  +FREM +   +   E+ +  I+  C 
Sbjct: 188 AQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACL 247

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
           +I +L   +++H   I  G F+    V+   +  Y+KC   + A RVF  M  +   SW 
Sbjct: 248 EISQLRSLKELHGYSIRHG-FQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWN 306

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
           A+I GC  + +    ++L+  M   G+ P   T+  +LLA A L+ LR GK +HG+    
Sbjct: 307 ALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRH 366

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
           G + D  +  +L+ +Y  C E+   AR++F+  + K  V W+++I GYSQ+G   +A+ L
Sbjct: 367 GLEIDSFIGISLLSLYIHCGES-SSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALIL 425

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
           F ++  +  +P+ + ++++L +C++QS L  G   HCY +KA L  DV +  + ++MY+K
Sbjct: 426 FRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAK 485

Query: 381 CGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
            G I  S  +F+ +  +D  SW  +I+ YG HG GEE+++LF  M++ G  PD  T + I
Sbjct: 486 SGCIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGI 545

Query: 441 LSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKP 500
           L+ C+HAGLV+E    FN +     I   +EHYAC +D+LG++G+++DA ++V  MP +P
Sbjct: 546 LTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQP 605

Query: 501 STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWR 560
            +R+ SSL+S CR  G LE+ +++A +L+E EP+N  NY  LS + + SG W     V +
Sbjct: 606 DSRVWSSLLSFCRNFGELEIGQIVAEKLLELEPKNVENYVSLSNLYAGSGRWDDVRRVRQ 665

Query: 561 VMRAKGLSKSYGFSRIE 577
           +++  GL K  G S IE
Sbjct: 666 MIKDIGLQKDAGCSWIE 682



 Score =  245 bits (626), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 160/552 (28%), Positives = 286/552 (51%), Gaps = 15/552 (2%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
            Y   + ++ + +  +   ++    P VIKAC      +  G  +H   +K G   D  +
Sbjct: 10  LYSDAIDMFVKLITDTEFNADNFTFPCVIKACT-GSLDRGLGEVIHGMVIKMGLLLDVFV 68

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC-- 123
            N+LI+MY KF   ++A ++F  MP R+ +SWNSII+ F++NGF     +M  EM     
Sbjct: 69  GNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEE 128

Query: 124 GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
           G +     L  ++ +C++  ++++G +IH L +  G  E  V V+ +L+D+YSKC +   
Sbjct: 129 GLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSE-DVRVNNSLVDMYSKCGYLTE 187

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQ-REGVKPTRVTLTIVLLACA 242
           A  +F++   +N VSW  MI G           +LFR MQ +E ++   VT+  +L AC 
Sbjct: 188 AQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACL 247

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
           E+  LR+ K +HGY+   GF +D  ++   +  Y +C   +   R +F   + K V  W+
Sbjct: 248 EISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAER-VFYSMETKTVNSWN 306

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
           ++I G +Q+GD  +A+ L+ +M    + P+  T+ ++L +      L +G  VH ++++ 
Sbjct: 307 ALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRH 366

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
           GL  D  IG +L+++Y  CG  +S+  +F+ M  +  VSW  +ISGY  +G  E+AL LF
Sbjct: 367 GLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILF 426

Query: 423 LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEH--YAC-YVDL 479
            ++   G +P  I V+++L AC+    ++  +      +K    AL +E    AC  +D+
Sbjct: 427 RKLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALK----ALLMEDVFVACSTIDM 482

Query: 480 LGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA-EMLAHQLIEAEPENAAN 538
             KSG I+++  V   +  K      +++++A  +HG  E + E+        +  +   
Sbjct: 483 YAKSGCIKESRSVFDGLKNKDLAS-WNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFT 541

Query: 539 YTLLSMVCSESG 550
           +  +  VCS +G
Sbjct: 542 FIGILTVCSHAG 553


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 199/571 (34%), Positives = 325/571 (56%), Gaps = 5/571 (0%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           +E++L L+ Q +H  G+  +   +  ++K C    +    GL  H   +K G  A   + 
Sbjct: 398 FEESLSLFVQ-MHELGIAPDEHAISCLLK-CITCLSCARDGLVAHGYIVKLGFGAQCAVC 455

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           N+LIS YAK +    A  +F+ MP +DTISWNS+I+  + NG    ++E+F  M+  G  
Sbjct: 456 NALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQE 515

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
           L +  L  ++  C+Q      GR +H   +  G       ++ ALLD+YS C  W    +
Sbjct: 516 LDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIG-ETSLANALLDMYSNCSDWQSTNQ 574

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           +F  M  +N VSWTAMI+  + +  +D    L + M  +G++P    +T  L A A    
Sbjct: 575 IFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDES 634

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L+ GK++HGY    G +    ++ ALM MY +C   +  AR+IF+R   KDV+ W+++I 
Sbjct: 635 LKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRN-VEEARLIFDRVTNKDVISWNTLIG 693

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           GYS++   +E+  LFS M L+   PN+VT+  IL +    S L  G  +H Y ++ G   
Sbjct: 694 GYSRNNFPNESFSLFSDMLLQ-FRPNAVTMTCILPAAASISSLERGREIHAYALRRGFLE 752

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           D    NAL++MY KCG++  +  +F+ +  ++ +SWT +I+GYG HG+G+ A+ LF +M+
Sbjct: 753 DSYASNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMR 812

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
            SG+EPDA +  AIL AC H+GL  E    F  + KE KI   ++HY C VDLL ++G +
Sbjct: 813 GSGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLLSRTGDL 872

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546
           ++A + + +MP++P + I  SL+  CRIH  +++AE +A ++ + EPEN   Y LL+ + 
Sbjct: 873 KEALEFIESMPIEPDSSIWVSLLHGCRIHKNVKLAEKVADKVFKLEPENTGYYVLLANIY 932

Query: 547 SESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +E+  W   +++   +  +GL ++ G+S IE
Sbjct: 933 AEAERWEAVKKLKNKIGGRGLRENTGYSWIE 963



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 133/425 (31%), Positives = 219/425 (51%), Gaps = 20/425 (4%)

Query: 64  VISNSLISMYAKFSKPESAYQLFDEMPYR--DTISWNSIINCFTQNGFYVRSLEMFREMY 121
           V+   L+  Y K      A  +FD MP +  D   W S+++ + + G +  ++ +FR+M 
Sbjct: 137 VLGKRLVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQ 196

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
            CG    A  ++ ++   S +G L  G  IH L+   G    +  V+ AL+ +YS+C   
Sbjct: 197 CCGVSPDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLG-LGQACAVANALIAVYSRCGRM 255

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             A RVF+ M  R+ +SW +MI GC  +  + T +DLF  M  +G + + VT+  VL AC
Sbjct: 256 EDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPAC 315

Query: 242 AELRDLRNGKAIHGYAYCCGFDF----------DHHLSAALMHMYCECTEALHPARIIFE 291
           A L     GKA+HGY+   G  +          D  L + L+ MY +C + +  AR +F+
Sbjct: 316 AGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGD-MASARRVFD 374

Query: 292 RTKVK-DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLS 350
               K +V +W+ I+ GY++ G+  E++ LF +M    I P+   +  +L   T  S   
Sbjct: 375 AMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCAR 434

Query: 351 HGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYG 410
            GL  H YI+K G     ++ NAL++ Y+K   I  +  +FN M  +D +SW ++ISG  
Sbjct: 435 DGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCS 494

Query: 411 FHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH-----AGLVKEAETLFNNVMKEKK 465
            +G   EA++LF+ M   G E D++T+L++L AC       AG V    ++   ++ E  
Sbjct: 495 SNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETS 554

Query: 466 IALAI 470
           +A A+
Sbjct: 555 LANAL 559



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 130/448 (29%), Positives = 226/448 (50%), Gaps = 15/448 (3%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           +++ + L++Q +   G+  +   +  V+K C  +      G  +H    K G      ++
Sbjct: 185 FQEAVSLFRQ-MQCCGVSPDAHAVSCVLK-CVSSLGSLTEGEVIHGLLEKLGLGQACAVA 242

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSII-NCFTQNGFYVRSLEMFREMYLCGF 125
           N+LI++Y++  + E A ++FD M  RD ISWNS+I  CF+ NG++  ++++F +M+  G 
Sbjct: 243 NALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFS-NGWHGTAVDLFSKMWSQGT 301

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDG---------SFELSVFVSTALLDLYS 176
            + +  +  ++  C+ +G   +G+ +H   +  G         S      + + L+ +Y 
Sbjct: 302 EISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYV 361

Query: 177 KCHHWLIALRVFEQMVIRNEVS-WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLT 235
           KC     A RVF+ M  +  V  W  ++ G      ++  + LF  M   G+ P    ++
Sbjct: 362 KCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAIS 421

Query: 236 IVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV 295
            +L     L   R+G   HGY    GF     +  AL+  Y + +  +  A ++F R   
Sbjct: 422 CLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAK-SNMIGDAVLVFNRMPR 480

Query: 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV 355
           +D + W+S+I G S +G  SEA++LF RM  +  E +SVTLL++L +C +  +   G  V
Sbjct: 481 QDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVV 540

Query: 356 HCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYG 415
           H Y +K GL  + S+ NAL++MYS C    S++QIF  M  ++ VSWT +I+ Y   G  
Sbjct: 541 HGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLF 600

Query: 416 EEALQLFLEMQESGVEPDAITVLAILSA 443
           ++   L  EM   G+ PD   V + L A
Sbjct: 601 DKVAGLLQEMVLDGIRPDVFAVTSALHA 628



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 123/450 (27%), Positives = 209/450 (46%), Gaps = 38/450 (8%)

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFEL---SVFVSTALLDLYSKCHHWLIALRVFEQM 191
           ++ LC +   LE  ++ HAL+    +         +   L+  Y KC     A  VF+ M
Sbjct: 103 VVQLCGEERSLEAAKRAHALIRASSAAATGGKGSVLGKRLVLAYLKCGDLGEARTVFDGM 162

Query: 192 VIR--NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
             +  +   WT+++S    + ++   + LFR MQ  GV P    ++ VL   + L  L  
Sbjct: 163 PPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSCVLKCVSSLGSLTE 222

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
           G+ IHG     G      ++ AL+ +Y  C      AR +F+    +D + W+S+I G  
Sbjct: 223 GEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAAR-VFDSMHPRDAISWNSMIGGCF 281

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF--- 366
            +G    A+ LFS+M  +  E +SVT+L++L +C    +   G  VH Y +K+GL +   
Sbjct: 282 SNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLD 341

Query: 367 -------DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS-WTTLISGYGFHGYGEEA 418
                  D ++G+ L+ MY KCG + S+ ++F+ M+++  V  W  ++ GY   G  EE+
Sbjct: 342 SVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEES 401

Query: 419 LQLFLEMQESGVEPDAITVLAILS-----ACNHAGLVKEAETLFNNVMKEKKIALAIEHY 473
           L LF++M E G+ PD   +  +L      +C   GLV     +        K+    +  
Sbjct: 402 LSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIV--------KLGFGAQCA 453

Query: 474 AC--YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG-RLEVAEMLAHQLIE 530
            C   +    KS  I DA  V + MP +  T   +S++S C  +G   E  E+      +
Sbjct: 454 VCNALISFYAKSNMIGDAVLVFNRMP-RQDTISWNSVISGCSSNGLNSEAIELFIRMWTQ 512

Query: 531 AEPENAANYTLLSMV--CSESGNWLGAEEV 558
            +  ++   TLLS++  C++S  W     V
Sbjct: 513 GQELDSV--TLLSVLPACAQSRYWFAGRVV 540


>gi|15241714|ref|NP_198751.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171567|sp|Q9FLZ9.1|PP405_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g39350
 gi|10177683|dbj|BAB11009.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007040|gb|AED94423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 677

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 197/551 (35%), Positives = 314/551 (56%), Gaps = 7/551 (1%)

Query: 31  PSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMP 90
           P V KA    ++ +  GL +H   L+S    D  + N+L++MY  F K E A  +FD M 
Sbjct: 121 PFVAKAAGELKSMK-LGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMK 179

Query: 91  YRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQ 150
            RD ISWN++I+ + +NG+   +L MF  M      L    +  ++ +C  + +LE+GR 
Sbjct: 180 NRDVISWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRN 239

Query: 151 IHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQ 210
           +H LV  +      + V  AL+++Y KC     A  VF++M  R+ ++WT MI+G  +  
Sbjct: 240 VHKLV-EEKRLGDKIEVKNALVNMYLKCGRMDEARFVFDRMERRDVITWTCMINGYTEDG 298

Query: 211 NYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSA 270
           + +  ++L R MQ EGV+P  VT+  ++  C +   + +GK +HG+A       D  +  
Sbjct: 299 DVENALELCRLMQFEGVRPNAVTIASLVSVCGDALKVNDGKCLHGWAVRQQVYSDIIIET 358

Query: 271 ALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE 330
           +L+ MY +C       R+ F          WS+II G  Q+  +S+A+ LF RMR E +E
Sbjct: 359 SLISMYAKCKRVDLCFRV-FSGASKYHTGPWSAIIAGCVQNELVSDALGLFKRMRREDVE 417

Query: 331 PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQI 390
           PN  TL ++L +    + L   + +HCY+ K G    +     L+++YSKCG++ S+H+I
Sbjct: 418 PNIATLNSLLPAYAALADLRQAMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKI 477

Query: 391 FNEM----AARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH 446
           FN +     ++D V W  LISGYG HG G  ALQ+F+EM  SGV P+ IT  + L+AC+H
Sbjct: 478 FNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALNACSH 537

Query: 447 AGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILS 506
           +GLV+E  TLF  +++  K      HY C VDLLG++G++++A  +++T+P +P++ +  
Sbjct: 538 SGLVEEGLTLFRFMLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLITTIPFEPTSTVWG 597

Query: 507 SLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566
           +L++AC  H  +++ EM A++L E EPEN  NY LL+ + +  G W   E+V  +M   G
Sbjct: 598 ALLAACVTHENVQLGEMAANKLFELEPENTGNYVLLANIYAALGRWKDMEKVRSMMENVG 657

Query: 567 LSKSYGFSRIE 577
           L K  G S IE
Sbjct: 658 LRKKPGHSTIE 668



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 130/516 (25%), Positives = 244/516 (47%), Gaps = 28/516 (5%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           LHC  +  G  +  ++S +L   YA       A +LF+EMP    +S+N +I  + + G 
Sbjct: 37  LHCHVITGGRVSGHILS-TLSVTYALCGHITYARKLFEEMPQSSLLSYNIVIRMYVREGL 95

Query: 110 YVRSLEMFREM-----------YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVD 158
           Y  ++ +F  M           Y   FV KA           ++  ++LG  +H   I+ 
Sbjct: 96  YHDAISVFIRMVSEGVKCVPDGYTYPFVAKA---------AGELKSMKLGLVVHGR-ILR 145

Query: 159 GSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDL 218
             F    +V  ALL +Y       +A  VF+ M  R+ +SW  MISG   +   +  + +
Sbjct: 146 SWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVISWNTMISGYYRNGYMNDALMM 205

Query: 219 FRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCE 278
           F  M  E V     T+  +L  C  L+DL  G+ +H             +  AL++MY +
Sbjct: 206 FDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLK 265

Query: 279 CTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLA 338
           C   +  AR +F+R + +DV+ W+ +I GY++ GD+  A++L   M+ E + PN+VT+ +
Sbjct: 266 CGR-MDEARFVFDRMERRDVITWTCMINGYTEDGDVENALELCRLMQFEGVRPNAVTIAS 324

Query: 339 ILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARD 398
           ++S C     ++ G  +H + ++  +  D+ I  +L++MY+KC  +    ++F+  +   
Sbjct: 325 LVSVCGDALKVNDGKCLHGWAVRQQVYSDIIIETSLISMYAKCKRVDLCFRVFSGASKYH 384

Query: 399 FVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFN 458
              W+ +I+G   +    +AL LF  M+   VEP+  T+ ++L A      +++A  +  
Sbjct: 385 TGPWSAIIAGCVQNELVSDALGLFKRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHC 444

Query: 459 NVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTR---ILSSLVSACRIH 515
            + K   ++ +++     V +  K G +E A K+ + +  K  ++   +  +L+S   +H
Sbjct: 445 YLTKTGFMS-SLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMH 503

Query: 516 GRLEVAEMLAHQLIEAE-PENAANYTLLSMVCSESG 550
           G    A  +  +++ +    N   +T     CS SG
Sbjct: 504 GDGHNALQVFMEMVRSGVTPNEITFTSALNACSHSG 539



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 146/315 (46%), Gaps = 15/315 (4%)

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A  + +   KA+H +    G     H+ + L   Y  C    + AR +FE      ++ +
Sbjct: 26  AATQSISKTKALHCHVITGG-RVSGHILSTLSVTYALCGHITY-ARKLFEEMPQSSLLSY 83

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIE--PNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
           + +IR Y + G   +A+ +F RM  E ++  P+  T   +  +      +  GL VH  I
Sbjct: 84  NIVIRMYVREGLYHDAISVFIRMVSEGVKCVPDGYTYPFVAKAAGELKSMKLGLVVHGRI 143

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEAL 419
           +++    D  + NAL+ MY   G +  +  +F+ M  RD +SW T+ISGY  +GY  +AL
Sbjct: 144 LRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVISWNTMISGYYRNGYMNDAL 203

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFN--NVMKEKKIALAIEHYACYV 477
            +F  M    V+ D  T++++L  C H   +K+ E   N   +++EK++   IE     V
Sbjct: 204 MMFDWMVNESVDLDHATIVSMLPVCGH---LKDLEMGRNVHKLVEEKRLGDKIEVKNALV 260

Query: 478 DLLGKSGKIEDACKVVSTMPMKPS---TRILSSLVSACRIHGRLEVAEMLAHQLIEAEPE 534
           ++  K G++++A  V   M  +     T +++       +   LE+  ++     E    
Sbjct: 261 NMYLKCGRMDEARFVFDRMERRDVITWTCMINGYTEDGDVENALELCRLMQ---FEGVRP 317

Query: 535 NAANYTLLSMVCSES 549
           NA     L  VC ++
Sbjct: 318 NAVTIASLVSVCGDA 332


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 197/572 (34%), Positives = 334/572 (58%), Gaps = 6/572 (1%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
            + Q L L++  +  + L  N+     V++ C       + G +LH   LKSGS+ + + 
Sbjct: 246 MFLQALDLFRG-MQRAVLSMNSYTTVGVLQVCT-ELAQLNLGRELHAALLKSGSEVN-IQ 302

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
            N+L+ MY K  + +SA ++F E+  +D ISWNS+++C+ QNG Y  ++E   EM   GF
Sbjct: 303 CNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGF 362

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
                 +  + S    +G L  G+++HA  I     +    V   L+D+Y KC +   + 
Sbjct: 363 QPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQ-RLDSDTQVGNTLMDMYMKCRYIEYSA 421

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
            VF++M I++ +SWT +I+    S  +   +++FR  Q+EG+K   + +  +L AC+ L 
Sbjct: 422 HVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLE 481

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
            +   K +H YA   G   D  +   ++ +Y EC E  H  ++ FE  + KD+V W+S+I
Sbjct: 482 TILLAKQLHCYAIRNGL-LDLVVKNRIIDIYGECGEVYHSLKM-FETVEQKDIVTWTSMI 539

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
             Y+ SG L+EA+ LF+ M+   ++P+SV L++IL +    S L+ G  VH ++++   +
Sbjct: 540 NCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFH 599

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            + +I ++L++MYS CGS++ + ++FN +  +D V WT +I+  G HG+G++A+ LF  M
Sbjct: 600 MEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINATGMHGHGKQAIDLFKRM 659

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
            ++GV PD ++ LA+L AC+H+ LV E +   + +M   ++    EHYAC VDLLG+SG+
Sbjct: 660 LQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLEPWQEHYACVVDLLGRSGQ 719

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV 545
            E+A + + +MP+KP + +  SL+ ACR+H   E+A + A++L+E EP+N  NY L+S V
Sbjct: 720 TEEAYEFIKSMPLKPKSVVWCSLLGACRVHKNHELAVVAANRLLELEPDNPGNYVLVSNV 779

Query: 546 CSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +E G W  A+EV   +  +GL K    S IE
Sbjct: 780 FAEMGKWNNAKEVRARISERGLRKDPACSWIE 811



 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 162/537 (30%), Positives = 291/537 (54%), Gaps = 21/537 (3%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           SG+  +   L SV+KA    +     G ++H  A+K G D    ++N+LI+MYAK    +
Sbjct: 158 SGVAPDGCTLASVLKASG-VEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILD 216

Query: 81  SAYQLFDEM-PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLC 139
           SA ++F+ M   RD  SWNS+I+   QNG ++++L++FR M      + +    G++ +C
Sbjct: 217 SAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVC 276

Query: 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSW 199
           +++ +L LGR++HA ++  GS E+++  + ALL +Y+KC     ALRVF ++  ++ +SW
Sbjct: 277 TELAQLNLGRELHAALLKSGS-EVNIQCN-ALLVMYTKCGRVDSALRVFREIDEKDYISW 334

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
            +M+S  + +  Y   I+    M R G +P    +  +  A   L  L NGK +H YA  
Sbjct: 335 NSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIK 394

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
              D D  +   LM MY +C    + A  +F+R ++KD + W++II  Y+QS    EA++
Sbjct: 395 QRLDSDTQVGNTLMDMYMKCRYIEYSAH-VFDRMRIKDHISWTTIITCYAQSSRHIEALE 453

Query: 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           +F   + E I+ + + + +IL +C+    +     +HCY ++ GL  D+ + N ++++Y 
Sbjct: 454 IFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGL-LDLVVKNRIIDIYG 512

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           +CG +  S ++F  +  +D V+WT++I+ Y   G   EAL LF EMQ + V+PD++ +++
Sbjct: 513 ECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVS 572

Query: 440 ILSACNH-AGLVKEAET----LFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS 494
           IL A    + L K  E     +  N   E+ I  ++      VD+    G +  A KV +
Sbjct: 573 ILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIVSSL------VDMYSGCGSLSGALKVFN 626

Query: 495 TMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLSMVCSES 549
            +  K    + +++++A  +HG  + A  L  ++++    P++ +   LL   CS S
Sbjct: 627 AVKCKDMV-LWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALL-YACSHS 681



 Score =  218 bits (555), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 150/507 (29%), Positives = 256/507 (50%), Gaps = 14/507 (2%)

Query: 47  GLQLHCTALKSGS--DADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCF 104
           G+Q+H  A+ +GS    D  ++  L+ MY K  +   A  LFD M  R   SWN++I  +
Sbjct: 77  GVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAY 136

Query: 105 TQNGFYVRSLEMFREMYL---CGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSF 161
             +G    +L ++R M L    G       LA ++      G+   G ++H L +  G  
Sbjct: 137 LSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAVKHG-L 195

Query: 162 ELSVFVSTALLDLYSKCHHWLIALRVFEQM-VIRNEVSWTAMISGCIDSQNYDTGIDLFR 220
           + S FV+ AL+ +Y+KC     A+RVFE M   R+  SW +MISGC+ +  +   +DLFR
Sbjct: 196 DRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFR 255

Query: 221 AMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECT 280
            MQR  +     T   VL  C EL  L  G+ +H      G + +   +A L+ MY +C 
Sbjct: 256 GMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNIQCNALLV-MYTKCG 314

Query: 281 EALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAIL 340
                 R +F     KD + W+S++  Y Q+G  +EA++  S M     +P+   ++++ 
Sbjct: 315 RVDSALR-VFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLS 373

Query: 341 SSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFV 400
           S+     +L +G  VH Y +K  L+ D  +GN LM+MY KC  I  S  +F+ M  +D +
Sbjct: 374 SAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHI 433

Query: 401 SWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNV 460
           SWTT+I+ Y       EAL++F E Q+ G++ D + + +IL AC+    +  A+ L    
Sbjct: 434 SWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYA 493

Query: 461 MKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEV 520
           ++   + L +++    +D+ G+ G++  + K+  T+  K      +S+++     G L  
Sbjct: 494 IRNGLLDLVVKNR--IIDIYGECGEVYHSLKMFETVEQK-DIVTWTSMINCYANSGLLNE 550

Query: 521 AEML--AHQLIEAEPENAANYTLLSMV 545
           A +L    Q  + +P++ A  ++L  +
Sbjct: 551 ALVLFAEMQSTDVQPDSVALVSILGAI 577


>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 204/571 (35%), Positives = 328/571 (57%), Gaps = 5/571 (0%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           Y +++ L+ +++   G+  ++     V+K  A A        ++H   LK G  +   + 
Sbjct: 139 YRESVGLF-EKMQELGIRGDSYTFTCVLKGFA-ASAKVRECKRVHGYVLKLGFGSYNAVV 196

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           NSLI+ Y K  + ESA  LFDE+  RD +SWNS+I+  T NGF    LE F +M   G  
Sbjct: 197 NSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVD 256

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
           + +  L  ++  C+ +G L LGR +HA  +  G F   V  +  LLD+YSKC +   A  
Sbjct: 257 VDSATLVNVLVACANVGNLTLGRALHAYGVKAG-FSGGVMFNNTLLDMYSKCGNLNGANE 315

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VF +M     VSWT++I+  +    +   I LF  MQ +G++P    +T V+ ACA    
Sbjct: 316 VFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNS 375

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L  G+ +H +        +  +S ALM+MY +C  ++  A +IF +  VK++V W+++I 
Sbjct: 376 LDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCG-SMEEANLIFSQLPVKNIVSWNTMIG 434

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           GYSQ+   +EA++LF  M+ ++++P+ VT+  +L +C   + L  G  +H +I++ G   
Sbjct: 435 GYSQNSLPNEALQLFLDMQ-KQLKPDDVTMACVLPACAGLAALEKGREIHGHILRKGYFS 493

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           D+ +  AL++MY KCG +  + Q+F+ +  +D + WT +I+GYG HG+G+EA+  F +M+
Sbjct: 494 DLHVACALVDMYVKCGLLVLAQQLFDMIPKKDMILWTVMIAGYGMHGFGKEAISTFEKMR 553

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
            +G+EP+  +  +IL AC H+GL+KE   LF+++  E  I   +EHYAC VDLL +SG +
Sbjct: 554 VAGIEPEESSFTSILYACTHSGLLKEGWKLFDSMKSECNIEPKLEHYACMVDLLIRSGNL 613

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546
             A K + TMP+KP   I  +L+S CRIH  +E+AE +A  + E EPEN   Y LL+ V 
Sbjct: 614 SRAYKFIETMPIKPDAAIWGALLSGCRIHHDVELAEKVAEHIFELEPENTRYYVLLANVY 673

Query: 547 SESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +E+  W   +++ R +   GL    G S IE
Sbjct: 674 AEAEKWEEVKKIQRRISKGGLKNDQGCSWIE 704



 Score =  205 bits (521), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 141/522 (27%), Positives = 264/522 (50%), Gaps = 11/522 (2%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPY 91
           SV++ CA  ++ +  G ++H     +G   D V+   L+ MY          ++FD +  
Sbjct: 62  SVLQLCAELKSLED-GKRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGILN 120

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQI 151
                WN +++ + + G Y  S+ +F +M   G    +     ++   +   ++   +++
Sbjct: 121 DKIFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECKRV 180

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQN 211
           H  V+  G    +  V++ L+  Y KC     A  +F+++  R+ VSW +MISGC  +  
Sbjct: 181 HGYVLKLGFGSYNAVVNS-LIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMNGF 239

Query: 212 YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAA 271
              G++ F  M   GV     TL  VL+ACA + +L  G+A+H Y    GF      +  
Sbjct: 240 SRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNNT 299

Query: 272 LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP 331
           L+ MY +C   L+ A  +F +     +V W+SII  + + G   EA+ LF  M+ + + P
Sbjct: 300 LLDMYSKCGN-LNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRP 358

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIF 391
           +   + +++ +C   + L  G  VH +I K  +  ++ + NALMNMY+KCGS+  ++ IF
Sbjct: 359 DIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIF 418

Query: 392 NEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVK 451
           +++  ++ VSW T+I GY  +    EALQLFL+MQ+  ++PD +T+  +L AC     ++
Sbjct: 419 SQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDMQKQ-LKPDDVTMACVLPACAGLAALE 477

Query: 452 EAETLFNNVMKEKKIALAIEHYAC-YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVS 510
           +   +  +++  +K   +  H AC  VD+  K G +  A ++   +P K    + + +++
Sbjct: 478 KGREIHGHIL--RKGYFSDLHVACALVDMYVKCGLLVLAQQLFDMIP-KKDMILWTVMIA 534

Query: 511 ACRIH--GRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESG 550
              +H  G+  ++     ++   EPE ++ +T +   C+ SG
Sbjct: 535 GYGMHGFGKEAISTFEKMRVAGIEPEESS-FTSILYACTHSG 575



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 108/246 (43%), Gaps = 12/246 (4%)

Query: 275 MYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSV 334
           M   C  ++  +  + E T     V  ++ I  + + GDL  AMKL SR +   +E N  
Sbjct: 1   MDLSCGSSVGVSATLSETTHNNVTVDKNAKICKFCEMGDLRNAMKLLSRSQRSELELN-- 58

Query: 335 TLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEM 394
           T  ++L  C     L  G  VH  I   G+  D  +G  L+ MY  CG +    +IF+ +
Sbjct: 59  TYCSVLQLCAELKSLEDGKRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGI 118

Query: 395 AARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAE 454
                  W  L+S Y   G   E++ LF +MQE G+  D+ T   +L     +  V+E +
Sbjct: 119 LNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECK 178

Query: 455 TLFNNVMKEKKIALAIEHYACYVDLL----GKSGKIEDACKVVSTMPMKPSTRILSSLVS 510
            +   V+K     L    Y   V+ L     K G++E A  +   +  +      +S++S
Sbjct: 179 RVHGYVLK-----LGFGSYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVS-WNSMIS 232

Query: 511 ACRIHG 516
            C ++G
Sbjct: 233 GCTMNG 238


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 189/562 (33%), Positives = 325/562 (57%), Gaps = 3/562 (0%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           Q++   G+  N     +V+ A +       +G  +H   L +G ++D  +  +L+ MYAK
Sbjct: 334 QKMQQEGVVPNRITYINVLNAFS-GPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAK 392

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
               +   Q+F+++  RD I+WN++I    + G +  + E++ +M   G +        +
Sbjct: 393 CGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVIL 452

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           ++ C     L  GR+IH+ V+ DG F   + V  AL+ +Y++C     A  +F +MV ++
Sbjct: 453 LNACVNPTALHWGREIHSRVVKDG-FMFDISVQNALISMYARCGSIKDARLLFNKMVRKD 511

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
            +SWTAMI G   S      + +F+ MQ+ G+KP RVT T +L AC+    L  G+ IH 
Sbjct: 512 IISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQ 571

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
                G   D H++  L++MY  C  ++  AR +F+R   +D+V ++++I GY+      
Sbjct: 572 QVIEAGLATDAHVANTLVNMYSMCG-SVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGK 630

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           EA+KLF R++ E ++P+ VT + +L++C     L     +H  ++K G   D S+GNAL+
Sbjct: 631 EALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALV 690

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           + Y+KCGS + +  +F++M  R+ +SW  +I G   HG G++ LQLF  M+  G++PD +
Sbjct: 691 STYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIV 750

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           T +++LSAC+HAGL++E    F ++ ++  I   IEHY C VDLLG++G++++   ++ T
Sbjct: 751 TFVSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKT 810

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGA 555
           MP + +TRI  +L+ ACRIHG + VAE  A   ++ +P+NAA Y  LS + + +G W  A
Sbjct: 811 MPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSA 870

Query: 556 EEVWRVMRAKGLSKSYGFSRIE 577
            ++ ++M  +G++K  G S IE
Sbjct: 871 AKLRKLMEQRGVTKEPGRSWIE 892



 Score =  282 bits (722), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 165/546 (30%), Positives = 294/546 (53%), Gaps = 7/546 (1%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           + E+ L L + E+   GL    A    ++ +C  + +    G ++H  A+K+    D  +
Sbjct: 224 YIEEALKLLR-EMQQHGLALGRATTMRLLSSCK-SPSALECGREIHVEAMKARLLFDVNV 281

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
           +N +++MYAK      A ++FD+M  +  +SW  II  +   G    + E+F++M   G 
Sbjct: 282 ANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGV 341

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
           V        +++  S    L+ G+ +H+  I++   E  + V TAL+ +Y+KC  +    
Sbjct: 342 VPNRITYINVLNAFSGPAALKWGKTVHSH-ILNAGHESDLAVGTALVKMYAKCGSYKDCR 400

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
           +VFE++V R+ ++W  MI G  +  N++   +++  MQREG+ P ++T  I+L AC    
Sbjct: 401 QVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPT 460

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
            L  G+ IH      GF FD  +  AL+ MY  C  ++  AR++F +   KD++ W+++I
Sbjct: 461 ALHWGREIHSRVVKDGFMFDISVQNALISMYARCG-SIKDARLLFNKMVRKDIISWTAMI 519

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
            G ++SG  +EA+ +F  M+   ++PN VT  +IL++C+  + L  G  +H  +++AGL 
Sbjct: 520 GGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLA 579

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            D  + N L+NMYS CGS+  + Q+F+ M  RD V++  +I GY  H  G+EAL+LF  +
Sbjct: 580 TDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRL 639

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
           QE G++PD +T + +L+AC ++G ++ A+ + + V+K+  ++      A  V    K G 
Sbjct: 640 QEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNA-LVSTYAKCGS 698

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGR-LEVAEMLAHQLIEAEPENAANYTLLSM 544
             DA  V   M MK +    ++++  C  HGR  +V ++     +E    +   +  L  
Sbjct: 699 FSDALLVFDKM-MKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLS 757

Query: 545 VCSESG 550
            CS +G
Sbjct: 758 ACSHAG 763



 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 162/554 (29%), Positives = 289/554 (52%), Gaps = 24/554 (4%)

Query: 16  QELHPSGLYSNTAILPSVIKAC-------AYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           Q L   G   N+     ++K C       A  + H+H  +Q HCT L      D    N+
Sbjct: 130 QYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHI-IQ-HCTVL------DQYTVNA 181

Query: 69  LISMYAKFSKPESAYQLFDEMPY--RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           LI+MY +    E A Q+++++ +  R   SWN+++  + Q G+   +L++ REM   G  
Sbjct: 182 LINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLA 241

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
           L       ++S C     LE GR+IH +  +       V V+  +L++Y+KC     A  
Sbjct: 242 LGRATTMRLLSSCKSPSALECGREIH-VEAMKARLLFDVNVANCILNMYAKCGSIHEARE 300

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VF++M  ++ VSWT +I G  D  + +   ++F+ MQ+EGV P R+T   VL A +    
Sbjct: 301 VFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAA 360

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L+ GK +H +    G + D  +  AL+ MY +C  +    R +FE+   +D++ W+++I 
Sbjct: 361 LKWGKTVHSHILNAGHESDLAVGTALVKMYAKCG-SYKDCRQVFEKLVNRDLIAWNTMIG 419

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           G ++ G+  EA +++ +M+ E + PN +T + +L++C   + L  G  +H  ++K G  F
Sbjct: 420 GLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMF 479

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           D+S+ NAL++MY++CGSI  +  +FN+M  +D +SWT +I G    G G EAL +F +MQ
Sbjct: 480 DISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQ 539

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
           ++G++P+ +T  +IL+AC+    +     +   V+ E  +A         V++    G +
Sbjct: 540 QAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVI-EAGLATDAHVANTLVNMYSMCGSV 598

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLSM 544
           +DA +V   M  +      ++++     H   + A  L  +L E   +P+      +L+ 
Sbjct: 599 KDARQVFDRMTQRDIV-AYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLN- 656

Query: 545 VCSESGNWLGAEEV 558
            C+ SG+   A+E+
Sbjct: 657 ACANSGSLEWAKEI 670



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 173/340 (50%), Gaps = 12/340 (3%)

Query: 213 DTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAAL 272
           D  +D+ + +Q++G +        +L  C E++DL  G+ +H +        D +   AL
Sbjct: 123 DRAMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNAL 182

Query: 273 MHMYCECTEALHPARIIFERTKVKDVVI--WSSIIRGYSQSGDLSEAMKLFSRMRLERIE 330
           ++MY +C  ++  AR ++ +    +  +  W++++ GY Q G + EA+KL   M+   + 
Sbjct: 183 INMYIQCG-SIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLA 241

Query: 331 PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQI 390
               T + +LSSC   S L  G  +H   MKA L FDV++ N ++NMY+KCGSI  + ++
Sbjct: 242 LGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREV 301

Query: 391 FNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLV 450
           F++M  +  VSWT +I GY   G+ E A ++F +MQ+ GV P+ IT + +L+A +    +
Sbjct: 302 FDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAAL 361

Query: 451 KEAETLFNNVMK---EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSS 507
           K  +T+ ++++    E  +A+        V +  K G  +D C+ V    +       ++
Sbjct: 362 KWGKTVHSHILNAGHESDLAVG----TALVKMYAKCGSYKD-CRQVFEKLVNRDLIAWNT 416

Query: 508 LVSACRIHGRLEVAEMLAHQLI-EAEPENAANYTLLSMVC 546
           ++      G  E A  + HQ+  E    N   Y +L   C
Sbjct: 417 MIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNAC 456


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 191/498 (38%), Positives = 294/498 (59%), Gaps = 3/498 (0%)

Query: 80  ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLC 139
           ESA +LFDE+  RD ISWNS+I+ +  NG   + L++F +M L G       +  +++ C
Sbjct: 202 ESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGC 261

Query: 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSW 199
           S  G L LGR +H   I   SF   + ++  LLD+YSK  +   A++VFE M  R+ VSW
Sbjct: 262 SNTGMLLLGRALHGYAI-KASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSW 320

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
           T+MI+G       D  + LF  M++EG+ P   T+T +L ACA    L NGK +H Y   
Sbjct: 321 TSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKE 380

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
                D  +S ALM MY +C  ++  A  +F   +VKD+V W+++I GYS++   +EA+ 
Sbjct: 381 NKMQSDLFVSNALMDMYAKCG-SMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALN 439

Query: 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           LF  M+    +PNS+T+  IL +C   + L  G  +H +I++ G + D  + NAL++MY 
Sbjct: 440 LFVEMQYNS-KPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYL 498

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           KCG++  +  +F+ +  +D VSWT +I+GYG HGYG EA+  F EM+ SG+EPD ++ ++
Sbjct: 499 KCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFIS 558

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           IL AC+H+GL+ E    FN +     I    EHYAC VDLL ++G +  A K +  MP++
Sbjct: 559 ILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIE 618

Query: 500 PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVW 559
           P   I  +L+  CRI+  +++AE +A  + E EPEN   Y LL+ + +E+  W   +++ 
Sbjct: 619 PDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLR 678

Query: 560 RVMRAKGLSKSYGFSRIE 577
             +  +GL K+ G S IE
Sbjct: 679 ERIGRRGLRKNPGCSWIE 696



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 128/414 (30%), Positives = 210/414 (50%), Gaps = 17/414 (4%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           VS    E+ L L++Q L   G+ ++ A + SV+  C+        G  LH  A+K+    
Sbjct: 227 VSNGLSEKGLDLFEQML-LLGINTDLATMVSVVAGCSNTGMLL-LGRALHGYAIKASFGK 284

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           +  ++N L+ MY+K     SA Q+F+ M  R  +SW S+I  + + G    S+ +F EM 
Sbjct: 285 ELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEME 344

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
             G       +  I+  C+  G LE G+ +H   I +   +  +FVS AL+D+Y+KC   
Sbjct: 345 KEGISPDIFTITTILHACACTGLLENGKDVHN-YIKENKMQSDLFVSNALMDMYAKCGSM 403

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             A  VF +M +++ VSW  MI G   +   +  ++LF  MQ    KP  +T+  +L AC
Sbjct: 404 GDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNS-KPNSITMACILPAC 462

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A L  L  G+ IHG+    GF  D H++ AL+ MY +C  AL  AR++F+    KD+V W
Sbjct: 463 ASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCG-ALGLARLLFDMIPEKDLVSW 521

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV------ 355
           + +I GY   G  SEA+  F+ MR   IEP+ V+ ++IL +C+    L  G G       
Sbjct: 522 TVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRN 581

Query: 356 HCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISG 408
           +C I     ++       ++++ ++ G+++ +++    M    D   W  L+ G
Sbjct: 582 NCCIEPKSEHY-----ACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCG 630



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 109/376 (28%), Positives = 190/376 (50%), Gaps = 50/376 (13%)

Query: 135 IISLCSQIGELELGRQIHALV------------------------------IVDGSFELS 164
           ++ LC+ +  ++ GR+IH+++                              I D      
Sbjct: 107 VLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEK 166

Query: 165 VFVSTALLDLYSKCHHWLIAL------------------RVFEQMVIRNEVSWTAMISGC 206
           VF+   L++ Y+K  ++  +L                  ++F+++  R+ +SW +MISG 
Sbjct: 167 VFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGY 226

Query: 207 IDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDH 266
           + +   + G+DLF  M   G+     T+  V+  C+    L  G+A+HGYA    F  + 
Sbjct: 227 VSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKEL 286

Query: 267 HLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRL 326
            L+  L+ MY + +  L+ A  +FE    + VV W+S+I GY++ G    +++LF  M  
Sbjct: 287 TLNNCLLDMYSK-SGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEK 345

Query: 327 ERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITS 386
           E I P+  T+  IL +C     L +G  VH YI +  +  D+ + NALM+MY+KCGS+  
Sbjct: 346 EGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGD 405

Query: 387 SHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH 446
           +H +F+EM  +D VSW T+I GY  +    EAL LF+EMQ +  +P++IT+  IL AC  
Sbjct: 406 AHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNS-KPNSITMACILPACAS 464

Query: 447 AGLVKEAETLFNNVMK 462
              ++  + +  ++++
Sbjct: 465 LAALERGQEIHGHILR 480



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 133/343 (38%), Gaps = 104/343 (30%)

Query: 217 DLFRAMQ--REGVKPTRVTLTI--VLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAAL 272
           +L RAM+   +  KP     T   VL  CA+L+ +++G+ IH        + D  L + L
Sbjct: 83  NLRRAMELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKL 142

Query: 273 MHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPN 332
           + MY  C                                GDL E  ++F ++  E+    
Sbjct: 143 VFMYVTC--------------------------------GDLREGRRIFDKVANEK---- 166

Query: 333 SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS--------- 383
                                              V + N LMN Y+K G+         
Sbjct: 167 -----------------------------------VFLWNLLMNGYAKIGNFRESLSLFK 191

Query: 384 ---------ITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
                    + S+ ++F+E+  RD +SW ++ISGY  +G  E+ L LF +M   G+  D 
Sbjct: 192 RMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDL 251

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMKE---KKIALAIEHYACYVDLLGKSGKIEDACK 491
            T++++++ C++ G++     L    +K    K++ L      C +D+  KSG +  A +
Sbjct: 252 ATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLN----NCLLDMYSKSGNLNSAIQ 307

Query: 492 VVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPE 534
           V  TM      R + S  S    + R  +++M      E E E
Sbjct: 308 VFETM----GERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKE 346



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 108/257 (42%), Gaps = 24/257 (9%)

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
           + + G+L  AM+L ++     +E    T  ++L  C     +  G  +H  I    +  D
Sbjct: 78  FCELGNLRRAMELINQSPKPDLELR--TYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVD 135

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
             +G+ L+ MY  CG +    +IF+++A      W  L++GY   G   E+L LF  M+E
Sbjct: 136 GVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRE 195

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487
            G+                   V+ A  LF+  + ++ +       + YV   G S K  
Sbjct: 196 LGIRR-----------------VESARKLFDE-LGDRDVISWNSMISGYVS-NGLSEKGL 236

Query: 488 DACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE--PENAANYTLLSMV 545
           D  + +  + +      + S+V+ C   G L +   L    I+A    E   N  LL M 
Sbjct: 237 DLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMY 296

Query: 546 CSESGNWLGAEEVWRVM 562
            S+SGN   A +V+  M
Sbjct: 297 -SKSGNLNSAIQVFETM 312


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 185/562 (32%), Positives = 323/562 (57%), Gaps = 3/562 (0%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           +EL   G   +   LP VI+AC   +  Q  G  +H    K G D D  +  +L+ MY K
Sbjct: 19  RELIRCGARPDNYTLPFVIRACRDLKNLQ-MGRLIHHIVYKFGLDLDHFVCAALVDMYVK 77

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
             + E A  LFD+M  RD ++W  +I  + + G    SL +F +M   G V     +  +
Sbjct: 78  CREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTV 137

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           +  C+++G +   R I    I    F+L V + TA++D+Y+KC     A  +F++M  +N
Sbjct: 138 VFACAKLGAMHKARIIDDY-IQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKN 196

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
            +SW+AMI+           +DLFR M   G+ P ++TL  +L AC++L++L+ G+ IH 
Sbjct: 197 VISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHH 256

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
             Y  G D DH + AAL+ MY +C E +  AR +F++   +D+V W+ +I GY++ G+ +
Sbjct: 257 IVYKFGLDLDHFVCAALVDMYGKCRE-IEDARFLFDKMPERDLVTWTVMIGGYAECGNAN 315

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           E++ LF +MR E + P+ V ++ ++ +C +   +     +  YI +     DV +G A++
Sbjct: 316 ESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMI 375

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           +M++KCG + S+ +IF+ M  ++ +SW+ +I+ YG+HG G +AL LF  M  SG+ P+ I
Sbjct: 376 DMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKI 435

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           T++++L AC+HAGLV+E    F+ + ++  +   ++HY C VDLLG++G++++A K++ +
Sbjct: 436 TLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIES 495

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGA 555
           M ++    +  + + ACR H  + +AE  A  L+E +P+N  +Y LLS + + +G W   
Sbjct: 496 MTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDV 555

Query: 556 EEVWRVMRAKGLSKSYGFSRIE 577
            +   +M  + L K  G++ IE
Sbjct: 556 AKTRDLMSQRRLKKIPGWTWIE 577



 Score =  225 bits (574), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 141/452 (31%), Positives = 229/452 (50%), Gaps = 5/452 (1%)

Query: 100 IINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDG 159
           ++  F + G Y+     FRE+  CG       L  +I  C  +  L++GR IH +V   G
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 160 SFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLF 219
             +L  FV  AL+D+Y KC     A  +F++M  R+ V+WT MI G  +    +  + LF
Sbjct: 61  -LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLF 119

Query: 220 RAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCEC 279
             M+ EGV P +V +  V+ ACA+L  +   + I  Y     F  D  L  A++ MY +C
Sbjct: 120 EKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKC 179

Query: 280 TEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAI 339
              +  AR IF+R + K+V+ WS++I  Y   G   +A+ LF  M    + P+ +TL ++
Sbjct: 180 G-CVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASL 238

Query: 340 LSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDF 399
           L +C+    L  G  +H  + K GL+ D  +  AL++MY KC  I  +  +F++M  RD 
Sbjct: 239 LYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDL 298

Query: 400 VSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNN 459
           V+WT +I GY   G   E+L LF +M+E GV PD + ++ ++ AC   G + +A T+ ++
Sbjct: 299 VTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTI-DD 357

Query: 460 VMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLE 519
            ++ KK  L +      +D+  K G +E A ++   M  K      S++++A   HG+  
Sbjct: 358 YIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVIS-WSAMIAAYGYHGQGR 416

Query: 520 VA-EMLAHQLIEAEPENAANYTLLSMVCSESG 550
            A ++    L      N      L   CS +G
Sbjct: 417 KALDLFPMMLRSGILPNKITLVSLLYACSHAG 448


>gi|297805814|ref|XP_002870791.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316627|gb|EFH47050.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 674

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 199/551 (36%), Positives = 313/551 (56%), Gaps = 7/551 (1%)

Query: 31  PSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMP 90
           P V KA    ++    GL +H   L+S    D  + N+L++MY  F + E A  +FD M 
Sbjct: 121 PFVAKAAGELKSIS-LGLVIHGRILRSWFGMDKYVQNALLAMYMNFGRVEMARNVFDVMK 179

Query: 91  YRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQ 150
            RD ISWN++I+ + +NG+   +L MF  M   G       +  ++ +C  +  LE+GR 
Sbjct: 180 NRDVISWNTMISGYYRNGYMNDALMMFDWMVNEGVDPDHATIVSMLPVCGHLKGLEMGRN 239

Query: 151 IHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQ 210
           +H LV  +      + V  AL+++Y KC     A  VF +M  R+ ++WT MI+G I+  
Sbjct: 240 VHKLV-EEKRLGDKIEVKNALVNMYLKCGRMDEARFVFGRMERRDVITWTCMINGYIEDG 298

Query: 211 NYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSA 270
           + +  ++L R MQ EGV+P  VT+  ++ AC +   L +GK +HG+A       D  +  
Sbjct: 299 DVENALELCRLMQFEGVRPNAVTIASLVSACGDALKLNDGKCLHGWAIRQKVCSDIIIET 358

Query: 271 ALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE 330
           +L+ MY +C       R+ F          WS+II G  Q+  + +A+ LF RMR E +E
Sbjct: 359 SLISMYAKCKHIDLCFRV-FSGASRNHTGPWSAIIAGCVQNELVRDALDLFKRMRREDVE 417

Query: 331 PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQI 390
           PN  TL ++L +    + L   + +HCY+ K G    +     L+++YSKCG++ S+H+I
Sbjct: 418 PNIATLNSLLPAYATLADLRQTMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKI 477

Query: 391 FNEM----AARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH 446
           FN +     ++D V W  LISGYG HG G  ALQ+F+EM  SGV P+ IT  + L+AC+H
Sbjct: 478 FNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALNACSH 537

Query: 447 AGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILS 506
           +GLV+E  TLF+ +++  K      HY C VDLLG++G++++A  +++T+P +P++ I  
Sbjct: 538 SGLVEEGLTLFSFMLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLITTIPFEPTSTIWG 597

Query: 507 SLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566
           +L++AC  H  +++ EM A++L E EPEN  NY LL+ + +  G W   E+V  +M   G
Sbjct: 598 ALLAACVTHENVQLGEMAANKLFELEPENTGNYVLLANIYAALGRWKDMEKVRNMMENVG 657

Query: 567 LSKSYGFSRIE 577
           L K  G S IE
Sbjct: 658 LRKKPGHSTIE 668



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 133/508 (26%), Positives = 243/508 (47%), Gaps = 12/508 (2%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           LHC  +  G  +  ++S +L   YA       A +LFDEMP    +S+N +I  + ++G 
Sbjct: 37  LHCHVITGGRVSGHILS-TLSVTYALCGHIAYARKLFDEMPQSSLLSYNIVIRMYVRDGL 95

Query: 110 YVRSLEMFREMYLCGF--VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFV 167
           Y  ++ +F  M   G   V        +     ++  + LG  IH   I+   F +  +V
Sbjct: 96  YHDAINVFIRMVSEGIKCVPDGYTYPFVAKAAGELKSISLGLVIHGR-ILRSWFGMDKYV 154

Query: 168 STALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV 227
             ALL +Y       +A  VF+ M  R+ +SW  MISG   +   +  + +F  M  EGV
Sbjct: 155 QNALLAMYMNFGRVEMARNVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNEGV 214

Query: 228 KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPAR 287
            P   T+  +L  C  L+ L  G+ +H             +  AL++MY +C   +  AR
Sbjct: 215 DPDHATIVSMLPVCGHLKGLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGR-MDEAR 273

Query: 288 IIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQS 347
            +F R + +DV+ W+ +I GY + GD+  A++L   M+ E + PN+VT+ +++S+C    
Sbjct: 274 FVFGRMERRDVITWTCMINGYIEDGDVENALELCRLMQFEGVRPNAVTIASLVSACGDAL 333

Query: 348 FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLIS 407
            L+ G  +H + ++  +  D+ I  +L++MY+KC  I    ++F+  +      W+ +I+
Sbjct: 334 KLNDGKCLHGWAIRQKVCSDIIIETSLISMYAKCKHIDLCFRVFSGASRNHTGPWSAIIA 393

Query: 408 GYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETL-FNNVMKEKKI 466
           G   +    +AL LF  M+   VEP+  T+ ++L A  +A L    +T+  +  + +   
Sbjct: 394 GCVQNELVRDALDLFKRMRREDVEPNIATLNSLLPA--YATLADLRQTMNIHCYLTKTGF 451

Query: 467 ALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTR---ILSSLVSACRIHGRLEVAEM 523
             +++     V +  K G +E A K+ + +  K  ++   +  +L+S   +HG    A  
Sbjct: 452 MSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQ 511

Query: 524 LAHQLIEAE-PENAANYTLLSMVCSESG 550
           +  +++ +    N   +T     CS SG
Sbjct: 512 VFMEMVRSGVTPNEITFTSALNACSHSG 539



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 139/284 (48%), Gaps = 11/284 (3%)

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A  + +   KA+H +    G     H+ + L   Y  C    + AR +F+      ++ +
Sbjct: 26  AATQSISKTKALHCHVITGG-RVSGHILSTLSVTYALCGHIAY-ARKLFDEMPQSSLLSY 83

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIE--PNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
           + +IR Y + G   +A+ +F RM  E I+  P+  T   +  +      +S GL +H  I
Sbjct: 84  NIVIRMYVRDGLYHDAINVFIRMVSEGIKCVPDGYTYPFVAKAAGELKSISLGLVIHGRI 143

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEAL 419
           +++    D  + NAL+ MY   G +  +  +F+ M  RD +SW T+ISGY  +GY  +AL
Sbjct: 144 LRSWFGMDKYVQNALLAMYMNFGRVEMARNVFDVMKNRDVISWNTMISGYYRNGYMNDAL 203

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479
            +F  M   GV+PD  T++++L  C H   ++    + + +++EK++   IE     V++
Sbjct: 204 MMFDWMVNEGVDPDHATIVSMLPVCGHLKGLEMGRNV-HKLVEEKRLGDKIEVKNALVNM 262

Query: 480 LGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEM 523
             K G++++A  V   M  +        +   C I+G +E  ++
Sbjct: 263 YLKCGRMDEARFVFGRMERR------DVITWTCMINGYIEDGDV 300


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Vitis vinifera]
          Length = 1005

 Score =  361 bits (927), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 187/532 (35%), Positives = 304/532 (57%), Gaps = 3/532 (0%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G ++H  AL+   D+D +++  L+ MYAK  + E A QLF  +  RD ++W++II    Q
Sbjct: 348 GKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQ 407

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
            G+   +L +F+EM           L  I+  C+ +  L+LG+ IH    V    +  + 
Sbjct: 408 TGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFT-VKADMDSDLS 466

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
             TAL+ +Y+KC  +  AL  F +M  R+ V+W ++I+G     +    ID+F  ++   
Sbjct: 467 TGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSA 526

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           + P   T+  V+ ACA L DL  G  IHG     GF+ D H+  AL+ MY +C  +L  A
Sbjct: 527 INPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCG-SLPSA 585

Query: 287 RIIFERTK-VKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
             +F +T   KD V W+ II  Y Q+G   EA+  F +MRLE   PNSVT +++L +   
Sbjct: 586 EFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAY 645

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
            +    G+  H  I++ G   +  +GN+L++MY+KCG +  S ++FNEM  +D VSW  +
Sbjct: 646 LAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAM 705

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           +SGY  HG+G+ A+ LF  MQES V+ D+++ +++LSAC HAGLV+E   +F+++  +  
Sbjct: 706 LSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYH 765

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
           I   +EHYAC VDLLG++G  ++    +  MP++P   +  +L+ +CR+H  +++ E+  
Sbjct: 766 IKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVAL 825

Query: 526 HQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
             L++ EP N A++ +LS + ++SG W  A +    M   GL K+ G S +E
Sbjct: 826 DHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVE 877



 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 132/436 (30%), Positives = 229/436 (52%), Gaps = 9/436 (2%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           S  Y+N    P ++ +C     H +  LQ+H   + SG      I++ LI++Y+ F K +
Sbjct: 26  SSTYTNYLHYPRLLSSC----KHLNPLLQIHAQIIVSGFKHHHSITH-LINLYSLFHKCD 80

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
            A  +FD  P    I WNS+I  +T++  Y  +LEM+  M   G          ++  C+
Sbjct: 81  LARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACT 140

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
               L+ G   H  +   G  E  VF+   L+D+YSK      A  VF++M  R+ V+W 
Sbjct: 141 GALNLQEGVWFHGEIDRRG-LERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWN 199

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
           AMI+G   S++    +D FR+MQ  GV+P+ V+L  +     +L ++   ++IHGY +  
Sbjct: 200 AMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVF-- 257

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
             DF   +S  L+ +Y +C + +  AR +F++   +D V W +++ GY+ +G   E ++L
Sbjct: 258 RRDFSSAVSNGLIDLYSKCGD-VDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLEL 316

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
           F +M+L  +  N V+ ++   +      L  G  +H   ++  ++ D+ +   LM MY+K
Sbjct: 317 FDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAK 376

Query: 381 CGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
           CG    + Q+F  +  RD V+W+ +I+     GY EEAL LF EMQ   ++P+ +T+++I
Sbjct: 377 CGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSI 436

Query: 441 LSACNHAGLVKEAETL 456
           L AC    L+K  +++
Sbjct: 437 LPACADLSLLKLGKSI 452


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  361 bits (926), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 193/577 (33%), Positives = 329/577 (57%), Gaps = 4/577 (0%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           +V + F ++ L L+ + +    L  +   + S++ ACA      H G+QLH  A+K+G  
Sbjct: 337 LVQQGFSDRALELFTK-MQRDCLKPDCITVASLLSACASVGA-LHKGMQLHSHAIKAGMS 394

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
           AD ++  SL+ +Y+K +  E+A++ F      + + WN ++  + Q      S E+FR+M
Sbjct: 395 ADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQM 454

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
            + G +        I+  C+ +G L LG QIH  VI  G F+L+V+V + L+D+Y+K   
Sbjct: 455 QMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTG-FQLNVYVCSVLIDMYAKYGQ 513

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
             +ALR+  ++   + VSWTAMI+G +    +   + LF  M+  G++   +     + A
Sbjct: 514 LALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISA 573

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
           CA +R LR G+ IH  +Y  GF  D  ++ AL+ +Y  C   +  A + FE+   K+ + 
Sbjct: 574 CAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGR-IQEAYLAFEKIGDKNNIS 632

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           W+S++ G +QSG   EA+++F RM     E N  T  + +S+    + +  G  +H  ++
Sbjct: 633 WNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVL 692

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
           K G + +  + N+L+++Y+K GSI+ + + FN+M+ R+ +SW  +I+GY  HG G EAL+
Sbjct: 693 KTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALR 752

Query: 421 LFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLL 480
           LF EM+  G+ P+ +T + +LSAC+H GLVKE    F ++ K   +    EHY C VDLL
Sbjct: 753 LFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLL 812

Query: 481 GKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYT 540
           G++G+++ A + +  MP+     I  +L+SAC IH  +E+ E  AH L+E EPE++A Y 
Sbjct: 813 GRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYV 872

Query: 541 LLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           L+S + + S  W+  +   ++M+ +G+ K  G S IE
Sbjct: 873 LISNIYAVSRQWIHRDWSRKLMKDRGVKKEPGRSWIE 909



 Score =  241 bits (614), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 153/527 (29%), Positives = 275/527 (52%), Gaps = 7/527 (1%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           Q   L+++ L   G+  N      V+KAC       ++  Q+H      G D+ P+++N 
Sbjct: 142 QVFCLFRRML-AEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANL 200

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           LI +Y+K    ESA ++F+ +  +D ++W ++I+  +QNG    ++ +F +M+       
Sbjct: 201 LIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPT 260

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
             +L+ ++S  ++I   ELG Q+H LVI  G F    +V   L+ LYS+    + A R+F
Sbjct: 261 PYVLSSVLSASTKIQLFELGEQLHCLVIKWG-FHSETYVCNGLVALYSRSRKLISAERIF 319

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
             M  R+ VS+ ++ISG +     D  ++LF  MQR+ +KP  +T+  +L ACA +  L 
Sbjct: 320 STMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALH 379

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
            G  +H +A   G   D  L  +L+ +Y +C + +  A   F  T+ +++V+W+ ++  Y
Sbjct: 380 KGMQLHSHAIKAGMSADIILEGSLLDLYSKCAD-VETAHKFFLTTETENIVLWNVMLVAY 438

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
            Q  +LS++ ++F +M++E + PN  T  +IL +CT    L  G  +H +++K G   +V
Sbjct: 439 GQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNV 498

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
            + + L++MY+K G +  + +I   +   D VSWT +I+GY  H    EALQLF EM+  
Sbjct: 499 YVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYR 558

Query: 429 GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIA-LAIEHYACYVDLLGKSGKIE 487
           G++ D I   + +SAC     +++ + +          A L+I +    + L  + G+I+
Sbjct: 559 GIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINN--ALISLYARCGRIQ 616

Query: 488 DACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPE 534
           +A      +  K +    +SLVS     G  E A  +  +++  E E
Sbjct: 617 EAYLAFEKIGDKNNIS-WNSLVSGLAQSGYFEEALQVFVRMLRTEAE 662



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 125/454 (27%), Positives = 229/454 (50%), Gaps = 10/454 (2%)

Query: 48  LQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQN 107
           ++LHC   KSG D +P++ +SL+  Y +      A ++FDE   R   SWN +I+ F   
Sbjct: 78  MRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQ 137

Query: 108 GFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELG--RQIHALVIVDGSFELSV 165
               +   +FR M   G        AG++  C   G++     +Q+H+     G F+ S 
Sbjct: 138 KSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVG-GDIAFNYVKQVHSRTFYYG-FDSSP 195

Query: 166 FVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
            V+  L+DLYSK  +   A +VF  + +++ V+W AMISG   +   +  I LF  M   
Sbjct: 196 LVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHAS 255

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
            + PT   L+ VL A  +++    G+ +H      GF  + ++   L+ +Y    + +  
Sbjct: 256 EIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISA 315

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
            RI F     +D V ++S+I G  Q G    A++LF++M+ + ++P+ +T+ ++LS+C  
Sbjct: 316 ERI-FSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACAS 374

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
              L  G+ +H + +KAG++ D+ +  +L+++YSKC  + ++H+ F      + V W  +
Sbjct: 375 VGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVM 434

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           +  YG      ++ ++F +MQ  G+ P+  T  +IL  C   G +   E +  +V+   K
Sbjct: 435 LVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVI---K 491

Query: 466 IALAIEHYACYV--DLLGKSGKIEDACKVVSTMP 497
               +  Y C V  D+  K G++  A +++  +P
Sbjct: 492 TGFQLNVYVCSVLIDMYAKYGQLALALRILRRLP 525



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 117/421 (27%), Positives = 196/421 (46%), Gaps = 4/421 (0%)

Query: 139 CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
           C   G L    ++H  +   G F+    +  +L+D Y +      A++VF++   R+  S
Sbjct: 68  CLTSGSLFETMRLHCRISKSG-FDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFS 126

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN-GKAIHGYA 257
           W  MI   +  ++      LFR M  EG+ P   T   VL AC       N  K +H   
Sbjct: 127 WNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRT 186

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
           +  GFD    ++  L+ +Y +    +  A+ +F    +KD+V W ++I G SQ+G   EA
Sbjct: 187 FYYGFDSSPLVANLLIDLYSK-NGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEA 245

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
           + LF  M    I P    L ++LS+ T+      G  +HC ++K G + +  + N L+ +
Sbjct: 246 ILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVAL 305

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           YS+   + S+ +IF+ M +RD VS+ +LISG    G+ + AL+LF +MQ   ++PD ITV
Sbjct: 306 YSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITV 365

Query: 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
            ++LSAC   G + +   L ++ +K    A  I      +DL  K   +E A K   T  
Sbjct: 366 ASLLSACASVGALHKGMQLHSHAIKAGMSADIILE-GSLLDLYSKCADVETAHKFFLTTE 424

Query: 498 MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEE 557
            +        LV+  ++    +  E+     +E    N   Y  +   C+  G     E+
Sbjct: 425 TENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQ 484

Query: 558 V 558
           +
Sbjct: 485 I 485



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 84/191 (43%), Gaps = 12/191 (6%)

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
           S+ ++L + M    +  N    L +L  C     L   + +HC I K+G + +  + ++L
Sbjct: 40  SKRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSL 99

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           ++ Y + G    + ++F+E + R   SW  +I  +       +   LF  M   G+ P+ 
Sbjct: 100 VDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNG 159

Query: 435 ITVLAILSACNHAGL----VKE--AETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIED 488
            T   +L AC    +    VK+  + T +        +A  +      +DL  K+G IE 
Sbjct: 160 YTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLL------IDLYSKNGYIES 213

Query: 489 ACKVVSTMPMK 499
           A KV + + MK
Sbjct: 214 AKKVFNCICMK 224


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 203/572 (35%), Positives = 318/572 (55%), Gaps = 5/572 (0%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           ++  + LY   LH  G+  N    P V+KAC+     +  G+++H  A   G ++D  + 
Sbjct: 90  FDGAIDLYHSMLH-LGVRPNKYTYPFVLKACSGLLAIED-GVEIHSHAKMFGLESDVFVC 147

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
            +L+  YAK      A +LF  M +RD ++WN++I   +  G    ++++  +M   G  
Sbjct: 148 TALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGIC 207

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
             +  + G++    +   L  G+ +H    V  SF+  V V T LLD+Y+KC   L A +
Sbjct: 208 PNSSTIVGVLPTVGEAKALGHGKALHGYC-VRRSFDNGVVVGTGLLDMYAKCQCLLYARK 266

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM-QREGVKPTRVTLTIVLLACAELR 245
           +F+ M +RNEVSW+AMI G + S      ++LF  M  ++ + PT VTL  VL ACA+L 
Sbjct: 267 IFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLT 326

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
           DL  G+ +H Y    G   D  L   L+ MY +C   +  A   F+    KD V +S+I+
Sbjct: 327 DLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCG-VIDDAIRFFDXMNPKDSVSFSAIV 385

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
            G  Q+G+ + A+ +F  M+L  I+P+  T+L +L +C+  + L HG   H Y++  G  
Sbjct: 386 SGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFA 445

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            D  I NAL++MYSKCG I+ + ++FN M   D VSW  +I GYG HG G EAL LF ++
Sbjct: 446 TDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDL 505

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
              G++PD IT + +LS+C+H+GLV E    F+ + ++  I   +EH  C VD+LG++G 
Sbjct: 506 LALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGL 565

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV 545
           I++A   +  MP +P  RI S+L+SACRIH  +E+ E ++ ++    PE+  N+ LLS +
Sbjct: 566 IDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNI 625

Query: 546 CSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            S +G W  A  +    +  GL K  G S IE
Sbjct: 626 YSAAGRWDDAAHIRITQKDWGLKKIPGCSWIE 657



 Score =  256 bits (653), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 172/515 (33%), Positives = 270/515 (52%), Gaps = 20/515 (3%)

Query: 41  QTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSI 100
           + HQHF        LK+ S+AD  + + L  +Y   ++   A +LFDE+P    I WN I
Sbjct: 29  KIHQHF--------LKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQI 80

Query: 101 INCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGS 160
           I  +  NG +  +++++  M   G          ++  CS +  +E G +IH+   + G 
Sbjct: 81  IRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFG- 139

Query: 161 FELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFR 220
            E  VFV TAL+D Y+KC   + A R+F  M  R+ V+W AMI+GC      D  + L  
Sbjct: 140 LESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIM 199

Query: 221 AMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECT 280
            MQ EG+ P   T+  VL    E + L +GKA+HGY     FD    +   L+ MY +C 
Sbjct: 200 QMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQ 259

Query: 281 EALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRL-ERIEPNSVTLLAI 339
             L+ AR IF+   V++ V WS++I GY  S  + EA++LF +M L + ++P  VTL ++
Sbjct: 260 CLLY-ARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSV 318

Query: 340 LSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDF 399
           L +C + + LS G  +HCYI+K G   D+ +GN L++MY+KCG I  + + F+ M  +D 
Sbjct: 319 LRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDS 378

Query: 400 VSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNN 459
           VS++ ++SG   +G    AL +F  MQ SG++PD  T+L +L AC+H   ++        
Sbjct: 379 VSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGY 438

Query: 460 VMKEKKIALAIEHYAC--YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGR 517
           ++       A +   C   +D+  K GKI  A +V + M  +      ++++    IHG 
Sbjct: 439 LIVR---GFATDTLICNALIDMYSKCGKISFAREVFNRMD-RHDIVSWNAMIIGYGIHGL 494

Query: 518 LEVAEMLAHQLIE--AEPENAANYTLLSMVCSESG 550
              A  L H L+    +P++     LLS  CS SG
Sbjct: 495 GMEALGLFHDLLALGLKPDDITFICLLS-SCSHSG 528



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 114/388 (29%), Positives = 195/388 (50%), Gaps = 5/388 (1%)

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           ++  C Q   L   ++IH   + + S   S  V   L  LY  C+  ++A R+F+++   
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSS-VLHKLTRLYLSCNQVVLARRLFDEIPNP 72

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
           + + W  +I     +  +D  IDL+ +M   GV+P + T   VL AC+ L  + +G  IH
Sbjct: 73  SVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIH 132

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
            +A   G + D  +  AL+  Y +C   L  A+ +F     +DVV W+++I G S  G  
Sbjct: 133 SHAKMFGLESDVFVCTALVDFYAKCG-ILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLC 191

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
            +A++L  +M+ E I PNS T++ +L +      L HG  +H Y ++   +  V +G  L
Sbjct: 192 DDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGL 251

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM-QESGVEPD 433
           ++MY+KC  +  + +IF+ M  R+ VSW+ +I GY      +EAL+LF +M  +  ++P 
Sbjct: 252 LDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPT 311

Query: 434 AITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVV 493
            +T+ ++L AC     +     L   ++K   + L I      + +  K G I+DA +  
Sbjct: 312 PVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXV-LDILLGNTLLSMYAKCGVIDDAIRFF 370

Query: 494 STMPMKPSTRILSSLVSACRIHGRLEVA 521
             M  K S    S++VS C  +G   VA
Sbjct: 371 DXMNPKDSVS-FSAIVSGCVQNGNAAVA 397



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 93/196 (47%), Gaps = 6/196 (3%)

Query: 337 LAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA 396
           L +L +C +   L+    +H + +K   N D S+ + L  +Y  C  +  + ++F+E+  
Sbjct: 12  LHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPN 71

Query: 397 RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETL 456
              + W  +I  Y ++G  + A+ L+  M   GV P+  T   +L AC+    +++   +
Sbjct: 72  PSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEI 131

Query: 457 FNNVMKEKKIALAIEHYAC--YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRI 514
            ++    K   L  + + C   VD   K G + +A ++ S+M  +      +++++ C +
Sbjct: 132 HSHA---KMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHR-DVVAWNAMIAGCSL 187

Query: 515 HGRLEVAEMLAHQLIE 530
           +G  + A  L  Q+ E
Sbjct: 188 YGLCDDAVQLIMQMQE 203


>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 745

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 195/550 (35%), Positives = 306/550 (55%), Gaps = 23/550 (4%)

Query: 29  ILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDE 88
           ILPS++KACA A +    G +LH  A K+G  +D  + N+L++MY K     SA  +FD+
Sbjct: 90  ILPSLLKACAQASSGD-LGRELHGFAQKNGFASDVFVCNALMNMYEKCGCLVSARLVFDQ 148

Query: 89  MPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELG 148
           MP RD +SW +++ C+ ++  +  +L + REM   G  L    L  +I++   + +++ G
Sbjct: 149 MPERDVVSWTTMLGCYVRSKAFGEALRLVREMQFVGVKLSGVALISLIAVFGNLLDMKSG 208

Query: 149 RQIHALVIVD-GSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCI 207
           R +H  ++ + G  ++ V ++TAL+D+Y K      A R+F+++  R+ VSWT MI+GCI
Sbjct: 209 RAVHGYIVRNVGDEKMEVSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGCI 268

Query: 208 DSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
            S   D G   F  M  E + P  +TL  ++  C  +  L  GK  H Y    GF     
Sbjct: 269 RSCRLDEGAKNFNRMLEEKLFPNEITLLSLITECGFVGTLDLGKWFHAYLLRNGFGMSLA 328

Query: 268 LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
           L  AL+ MY +C +  + AR +F   K KDV IWS +I  Y+    + +   LF  M   
Sbjct: 329 LVTALIDMYGKCGQVGY-ARALFNGVKKKDVKIWSVLISAYAHVSCMDQVFNLFVEMLNN 387

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
            ++PN+VT++++LS C     L  G   H YI + GL  DV +  AL+NMY+KCG +T +
Sbjct: 388 DVKPNNVTMVSLLSLCAEAGALDLGKWTHAYINRHGLEVDVILETALINMYAKCGDVTIA 447

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHA 447
             +FNE   RD   W T+++G+  HG G+EAL+LF EM+  GVEP+ IT ++I  AC+H+
Sbjct: 448 RSLFNEAMQRDIRMWNTMMAGFSMHGCGKEALELFSEMESHGVEPNDITFVSIFHACSHS 507

Query: 448 GLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSS 507
           GL                    +EHY C VDLLG++G +++A  ++  MPM+P+T I  +
Sbjct: 508 GL--------------------MEHYGCLVDLLGRAGHLDEAHNIIENMPMRPNTIIWGA 547

Query: 508 LVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567
           L++AC++H  L + E+ A +++E +P+N     L S + + +  W     V   M   G+
Sbjct: 548 LLAACKLHKNLALGEVAARKILELDPQNCGYSVLKSNIYASAKRWNDVTSVREAMSHSGM 607

Query: 568 SKSYGFSRIE 577
            K  G S IE
Sbjct: 608 KKEPGLSWIE 617


>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic [Vitis vinifera]
 gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
          Length = 802

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 202/574 (35%), Positives = 330/574 (57%), Gaps = 8/574 (1%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           F++     ++ E    G+  +    P VIKAC         G ++H   +KSG D D  I
Sbjct: 107 FWDAVDFYHRMEF--GGVRGDNFTYPFVIKACGGLYDLAE-GERVHGKVIKSGLDLDIYI 163

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
            NSLI MYAK    ESA  +F EMP RD +SWNS+I+ +   G   RSL  FREM   G 
Sbjct: 164 GNSLIIMYAKIGCIESAEMVFREMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGI 223

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
            L    + GI+  CS  G L  G++IH  ++     EL V V T+L+D+Y+KC     A 
Sbjct: 224 KLDRFSVIGILGACSLEGFLRNGKEIHCQMM-RSRLELDVMVQTSLVDMYAKCGRMDYAE 282

Query: 186 RVFEQMVIRNEVSWTAMISG-CIDSQNYDTGIDLFRAMQREG-VKPTRVTLTIVLLACAE 243
           R+F+Q+  ++ V+W AMI G  +++Q++++     R MQ  G + P  +T+  +L  CA+
Sbjct: 283 RLFDQITDKSIVAWNAMIGGYSLNAQSFES-FAYVRKMQEGGKLHPDWITMINLLPPCAQ 341

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
           L  +  GK++HG+A   GF     L  AL+ MY EC + L PA  +F +   ++++ W++
Sbjct: 342 LEAILLGKSVHGFAIRNGFLPHLVLETALVDMYGECGK-LKPAECLFGQMNERNLISWNA 400

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           +I  Y+++G+  +AM LF  +  + ++P++ T+ +IL +    + L     +H Y+ K  
Sbjct: 401 MIASYTKNGENRKAMTLFQDLCNKTLKPDATTIASILPAYAELASLREAEQIHGYVTKLK 460

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
           L+ +  + N+++ MY KCG++  + +IF+ M  +D +SW T+I  Y  HG+G  +++LF 
Sbjct: 461 LDSNTFVSNSIVFMYGKCGNLLRAREIFDRMTFKDVISWNTVIMAYAIHGFGRISIELFS 520

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS 483
           EM+E G EP+  T +++L +C+ AGLV E    FN++ ++  I   IEHY C +DL+G++
Sbjct: 521 EMREKGFEPNGSTFVSLLLSCSVAGLVNEGWEYFNSMKRDYNINPGIEHYGCILDLIGRT 580

Query: 484 GKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLS 543
           G ++ A   +  MP+ P+ RI  SL++A R  G +E+AE+ A  ++  E +N   Y LLS
Sbjct: 581 GNLDHAKNFIEEMPLAPTARIWGSLLTASRNKGDVELAEIAAEHILSLEHDNTGCYVLLS 640

Query: 544 MVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            + +E+G W   E +   M+ +GL KS G S ++
Sbjct: 641 NMYAEAGRWEDVERIKFHMKKEGLEKSVGCSVVD 674



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 140/539 (25%), Positives = 256/539 (47%), Gaps = 19/539 (3%)

Query: 15  KQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYA 74
           K+   P        IL   I   A ++ +Q F ++ +  +L              +S Y 
Sbjct: 23  KRARTPQTNPDTDLILKPRIFKTARSKRNQSFLVERNSVSLTRA-----------LSSYV 71

Query: 75  KFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAG 134
           +    ++A  LF+ M   DT  WN +I  F  NG +  +++ +  M   G          
Sbjct: 72  ERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHRMEFGGVRGDNFTYPF 131

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           +I  C  + +L  G ++H  VI  G  +L +++  +L+ +Y+K      A  VF +M +R
Sbjct: 132 VIKACGGLYDLAEGERVHGKVIKSG-LDLDIYIGNSLIIMYAKIGCIESAEMVFREMPVR 190

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
           + VSW +MISG +   +    +  FR MQ  G+K  R ++  +L AC+    LRNGK IH
Sbjct: 191 DLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGACSLEGFLRNGKEIH 250

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
                   + D  +  +L+ MY +C    +  R +F++   K +V W+++I GYS +   
Sbjct: 251 CQMMRSRLELDVMVQTSLVDMYAKCGRMDYAER-LFDQITDKSIVAWNAMIGGYSLNAQS 309

Query: 315 SEAMKLFSRMRL-ERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNA 373
            E+     +M+   ++ P+ +T++ +L  C +   +  G  VH + ++ G    + +  A
Sbjct: 310 FESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVHGFAIRNGFLPHLVLETA 369

Query: 374 LMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPD 433
           L++MY +CG +  +  +F +M  R+ +SW  +I+ Y  +G   +A+ LF ++    ++PD
Sbjct: 370 LVDMYGECGKLKPAECLFGQMNERNLISWNAMIASYTKNGENRKAMTLFQDLCNKTLKPD 429

Query: 434 AITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVV 493
           A T+ +IL A      ++EAE +   V K K  +      +  V + GK G +  A ++ 
Sbjct: 430 ATTIASILPAYAELASLREAEQIHGYVTKLKLDSNTFVSNSI-VFMYGKCGNLLRAREIF 488

Query: 494 STMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLSMVCSESG 550
             M  K      ++++ A  IHG   ++  L  ++ E   EP N + +  L + CS +G
Sbjct: 489 DRMTFKDVIS-WNTVIMAYAIHGFGRISIELFSEMREKGFEP-NGSTFVSLLLSCSVAG 545


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 189/562 (33%), Positives = 323/562 (57%), Gaps = 3/562 (0%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           Q++   G+  N     SV+ A +     + +G  +H   L +G ++D  +  +L+ MYAK
Sbjct: 216 QKMEQEGVVPNRITYISVLNAFSSPAALK-WGKAVHSRILNAGHESDTAVGTALVKMYAK 274

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
               +   Q+F+++  RD I+WN++I    + G++  + E++ +M   G +        +
Sbjct: 275 CGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVIL 334

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           ++ C     L  G++IH+ V   G F   + V  AL+ +YS+C     A  VF++MV ++
Sbjct: 335 LNACVNSAALHWGKEIHSRVAKAG-FTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKD 393

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
            +SWTAMI G   S      + +++ MQ+ GV+P RVT T +L AC+    L  G+ IH 
Sbjct: 394 VISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQ 453

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
                G   D H+   L++MY  C  ++  AR +F+R   +D+V ++++I GY+      
Sbjct: 454 QVVEAGLATDAHVGNTLVNMYSMCG-SVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGK 512

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           EA+KLF R++ E ++P+ VT + +L++C     L     +H  + K G   D S+GNAL+
Sbjct: 513 EALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALV 572

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           + Y+KCGS + +  +F +M  R+ +SW  +I G   HG G++ALQLF  M+  GV+PD +
Sbjct: 573 STYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIV 632

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           T +++LSAC+HAGL++E    F ++ ++  I   IEHY C VDLLG++G++++A  ++ T
Sbjct: 633 TFVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKT 692

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGA 555
           MP + +TRI  +L+ ACRIHG + VAE  A   ++ + +NA  Y  LS + + +G W  A
Sbjct: 693 MPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDLDNAVVYVALSHMYAAAGMWDSA 752

Query: 556 EEVWRVMRAKGLSKSYGFSRIE 577
            ++ ++M  +G++K  G S I+
Sbjct: 753 AKLRKLMEQRGVTKEPGRSWIQ 774



 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 166/551 (30%), Positives = 291/551 (52%), Gaps = 17/551 (3%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           + E+ L L +Q +   GL  +   + S + +C      + +G ++H  A+++G   D  +
Sbjct: 106 YIEKALKLLRQ-MQQHGLAPDRTTIMSFLSSCKSPGALE-WGREIHFQAMQAGLLFDVKV 163

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
           +N +++MYAK    E A ++FD+M  +  +SW   I  +   G    + E+F++M   G 
Sbjct: 164 ANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGV 223

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
           V        +++  S    L+ G+ +H+  I++   E    V TAL+ +Y+KC  +    
Sbjct: 224 VPNRITYISVLNAFSSPAALKWGKAVHSR-ILNAGHESDTAVGTALVKMYAKCGSYKDCR 282

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
           +VFE++V R+ ++W  MI G  +   ++   +++  MQREGV P ++T  I+L AC    
Sbjct: 283 QVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSA 342

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
            L  GK IH      GF  D  +  AL+ MY  C  ++  AR++F++   KDV+ W+++I
Sbjct: 343 ALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCG-SIKDARLVFDKMVRKDVISWTAMI 401

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
            G ++SG  +EA+ ++  M+   +EPN VT  +IL++C+  + L  G  +H  +++AGL 
Sbjct: 402 GGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLA 461

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            D  +GN L+NMYS CGS+  + Q+F+ M  RD V++  +I GY  H  G+EAL+LF  +
Sbjct: 462 TDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRL 521

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK-----EKKIALAIEHYACYVDLL 480
           QE G++PD +T + +L+AC ++G ++ A  +   V K     +  +  A+      V   
Sbjct: 522 QEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNAL------VSTY 575

Query: 481 GKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL-IEAEPENAANY 539
            K G   DA  V   M  K +    ++++     HGR + A  L  ++ +E    +   +
Sbjct: 576 AKCGSFSDASIVFEKMT-KRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTF 634

Query: 540 TLLSMVCSESG 550
             L   CS +G
Sbjct: 635 VSLLSACSHAG 645



 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 164/563 (29%), Positives = 290/563 (51%), Gaps = 24/563 (4%)

Query: 16  QELHPSGLYSNTAILPSVIKAC-------AYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           Q L   G   N++    ++K C       A  Q HQH         ++  +  D    N+
Sbjct: 12  QYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHI--------IQHRTVPDQYTVNA 63

Query: 69  LISMYAKFSKPESAYQLFDEMPY--RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           LI+MY +    E A Q++ ++ Y  R   SWN+++  + Q G+  ++L++ R+M   G  
Sbjct: 64  LINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLA 123

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
                +   +S C   G LE GR+IH   +  G     V V+  +L++Y+KC     A  
Sbjct: 124 PDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLL-FDVKVANCILNMYAKCGSIEEARE 182

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VF++M  ++ VSWT  I G  D    +T  ++F+ M++EGV P R+T   VL A +    
Sbjct: 183 VFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAA 242

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L+ GKA+H      G + D  +  AL+ MY +C  +    R +FE+   +D++ W+++I 
Sbjct: 243 LKWGKAVHSRILNAGHESDTAVGTALVKMYAKCG-SYKDCRQVFEKLVNRDLIAWNTMIG 301

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           G ++ G   EA +++++M+ E + PN +T + +L++C   + L  G  +H  + KAG   
Sbjct: 302 GLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTS 361

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           D+ + NAL++MYS+CGSI  +  +F++M  +D +SWT +I G    G+G EAL ++ EMQ
Sbjct: 362 DIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQ 421

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
           ++GVEP+ +T  +IL+AC+    ++    +   V+ E  +A         V++    G +
Sbjct: 422 QAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVV-EAGLATDAHVGNTLVNMYSMCGSV 480

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLSM 544
           +DA +V   M ++      ++++     H   + A  L  +L E   +P+      +L+ 
Sbjct: 481 KDARQVFDRM-IQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLN- 538

Query: 545 VCSESGNWLGAEEVWRVMRAKGL 567
            C+ SG+   A E+  ++R  G 
Sbjct: 539 ACANSGSLEWAREIHTLVRKGGF 561



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 181/366 (49%), Gaps = 12/366 (3%)

Query: 213 DTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAAL 272
           D  +D+ + +Q++G +        +L  C E++DL  G+ +H +        D +   AL
Sbjct: 5   DGAVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNAL 64

Query: 273 MHMYCECTEALHPARIIFERTKVKDVVI--WSSIIRGYSQSGDLSEAMKLFSRMRLERIE 330
           ++MY +C  ++  AR ++++    +  +  W++++ GY Q G + +A+KL  +M+   + 
Sbjct: 65  INMYIQCG-SIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLA 123

Query: 331 PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQI 390
           P+  T+++ LSSC     L  G  +H   M+AGL FDV + N ++NMY+KCGSI  + ++
Sbjct: 124 PDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREV 183

Query: 391 FNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLV 450
           F++M  +  VSWT  I GY   G  E A ++F +M++ GV P+ IT +++L+A +    +
Sbjct: 184 FDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAAL 243

Query: 451 KEAETLFNNVMK---EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSS 507
           K  + + + ++    E   A+        V +  K G  +D C+ V    +       ++
Sbjct: 244 KWGKAVHSRILNAGHESDTAVG----TALVKMYAKCGSYKD-CRQVFEKLVNRDLIAWNT 298

Query: 508 LVSACRIHGRLEVAEMLAHQLI-EAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566
           ++      G  E A  + +Q+  E    N   Y +L   C  S      +E+   +   G
Sbjct: 299 MIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAG 358

Query: 567 LSKSYG 572
            +   G
Sbjct: 359 FTSDIG 364


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 203/572 (35%), Positives = 318/572 (55%), Gaps = 5/572 (0%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           ++  + LY   LH  G+  N    P V+KAC+     +  G+++H  A   G ++D  + 
Sbjct: 90  FDGAIDLYHSMLH-LGVRPNKYTYPFVLKACSGLLAIED-GVEIHSHAKMFGLESDVFVC 147

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
            +L+  YAK      A +LF  M +RD ++WN++I   +  G    ++++  +M   G  
Sbjct: 148 TALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGIC 207

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
             +  + G++    +   L  G+ +H    V  SF+  V V T LLD+Y+KC   L A +
Sbjct: 208 PNSSTIVGVLPTVGEAKALGHGKALHGYC-VRRSFDNGVVVGTGLLDMYAKCQCLLYARK 266

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM-QREGVKPTRVTLTIVLLACAELR 245
           +F+ M +RNEVSW+AMI G + S      ++LF  M  ++ + PT VTL  VL ACA+L 
Sbjct: 267 IFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLT 326

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
           DL  G+ +H Y    G   D  L   L+ MY +C   +  A   F+    KD V +S+I+
Sbjct: 327 DLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCG-VIDDAIRFFDEMNPKDSVSFSAIV 385

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
            G  Q+G+ + A+ +F  M+L  I+P+  T+L +L +C+  + L HG   H Y++  G  
Sbjct: 386 SGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFA 445

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            D  I NAL++MYSKCG I+ + ++FN M   D VSW  +I GYG HG G EAL LF ++
Sbjct: 446 TDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDL 505

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
              G++PD IT + +LS+C+H+GLV E    F+ + ++  I   +EH  C VD+LG++G 
Sbjct: 506 LALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGL 565

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV 545
           I++A   +  MP +P  RI S+L+SACRIH  +E+ E ++ ++    PE+  N+ LLS +
Sbjct: 566 IDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNI 625

Query: 546 CSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            S +G W  A  +    +  GL K  G S IE
Sbjct: 626 YSAAGRWDDAAHIRITQKDWGLKKIPGCSWIE 657



 Score =  257 bits (657), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 173/515 (33%), Positives = 271/515 (52%), Gaps = 20/515 (3%)

Query: 41  QTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSI 100
           + HQHF        LK+ S+AD  + + L  +Y   ++   A +LFDE+P    I WN I
Sbjct: 29  KIHQHF--------LKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQI 80

Query: 101 INCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGS 160
           I  +  NG +  +++++  M   G          ++  CS +  +E G +IH+   + G 
Sbjct: 81  IRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFG- 139

Query: 161 FELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFR 220
            E  VFV TAL+D Y+KC   + A R+F  M  R+ V+W AMI+GC      D  + L  
Sbjct: 140 LESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIM 199

Query: 221 AMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECT 280
            MQ EG+ P   T+  VL    E + L +GKA+HGY     FD    +   L+ MY +C 
Sbjct: 200 QMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQ 259

Query: 281 EALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRL-ERIEPNSVTLLAI 339
             L+ AR IF+   V++ V WS++I GY  S  + EA++LF +M L + ++P  VTL ++
Sbjct: 260 CLLY-ARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSV 318

Query: 340 LSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDF 399
           L +C + + LS G  +HCYI+K G   D+ +GN L++MY+KCG I  + + F+EM  +D 
Sbjct: 319 LRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDS 378

Query: 400 VSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNN 459
           VS++ ++SG   +G    AL +F  MQ SG++PD  T+L +L AC+H   ++        
Sbjct: 379 VSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGY 438

Query: 460 VMKEKKIALAIEHYAC--YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGR 517
           ++       A +   C   +D+  K GKI  A +V + M  +      ++++    IHG 
Sbjct: 439 LIVR---GFATDTLICNALIDMYSKCGKISFAREVFNRMD-RHDIVSWNAMIIGYGIHGL 494

Query: 518 LEVAEMLAHQLIE--AEPENAANYTLLSMVCSESG 550
              A  L H L+    +P++     LLS  CS SG
Sbjct: 495 GMEALGLFHDLLALGLKPDDITFICLLS-SCSHSG 528



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 114/388 (29%), Positives = 195/388 (50%), Gaps = 5/388 (1%)

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           ++  C Q   L   ++IH   + + S   S  V   L  LY  C+  ++A R+F+++   
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSS-VLHKLTRLYLSCNQVVLARRLFDEIPNP 72

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
           + + W  +I     +  +D  IDL+ +M   GV+P + T   VL AC+ L  + +G  IH
Sbjct: 73  SVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIH 132

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
            +A   G + D  +  AL+  Y +C   L  A+ +F     +DVV W+++I G S  G  
Sbjct: 133 SHAKMFGLESDVFVCTALVDFYAKCG-ILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLC 191

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
            +A++L  +M+ E I PNS T++ +L +      L HG  +H Y ++   +  V +G  L
Sbjct: 192 DDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGL 251

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM-QESGVEPD 433
           ++MY+KC  +  + +IF+ M  R+ VSW+ +I GY      +EAL+LF +M  +  ++P 
Sbjct: 252 LDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPT 311

Query: 434 AITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVV 493
            +T+ ++L AC     +     L   ++K   + L I      + +  K G I+DA +  
Sbjct: 312 PVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSV-LDILLGNTLLSMYAKCGVIDDAIRFF 370

Query: 494 STMPMKPSTRILSSLVSACRIHGRLEVA 521
             M  K S    S++VS C  +G   VA
Sbjct: 371 DEMNPKDSVS-FSAIVSGCVQNGNAAVA 397



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 93/196 (47%), Gaps = 6/196 (3%)

Query: 337 LAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA 396
           L +L +C +   L+    +H + +K   N D S+ + L  +Y  C  +  + ++F+E+  
Sbjct: 12  LHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPN 71

Query: 397 RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETL 456
              + W  +I  Y ++G  + A+ L+  M   GV P+  T   +L AC+    +++   +
Sbjct: 72  PSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEI 131

Query: 457 FNNVMKEKKIALAIEHYAC--YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRI 514
            ++    K   L  + + C   VD   K G + +A ++ S+M  +      +++++ C +
Sbjct: 132 HSHA---KMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHR-DVVAWNAMIAGCSL 187

Query: 515 HGRLEVAEMLAHQLIE 530
           +G  + A  L  Q+ E
Sbjct: 188 YGLCDDAVQLIMQMQE 203


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 193/577 (33%), Positives = 328/577 (56%), Gaps = 4/577 (0%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           +V + F ++ L L+ + +    L  +   + S++ ACA      H G+QLH  A+K+G  
Sbjct: 337 LVQQGFSDRALELFTK-MQRDCLKPDCITVASLLSACASVGA-LHKGMQLHSHAIKAGMS 394

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
           AD ++  SL+ +Y+K +  E+A++ F      + + WN ++  + Q      S E+FR+M
Sbjct: 395 ADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQM 454

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
            + G +        I+  C+ +G L LG QIH  VI  G F+L+V+V + L+D+Y+K   
Sbjct: 455 QMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTG-FQLNVYVCSVLIDMYAKYGQ 513

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
             +ALR+  ++   + VSWTAMI+G +    +   + LF  M+  G++   +     + A
Sbjct: 514 LALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISA 573

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
           CA +R LR G+ IH  +Y  GF  D  ++ AL+ +Y  C   +  A + FE+   K+ + 
Sbjct: 574 CAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGR-IQEAYLAFEKIGDKNNIS 632

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           W+S++ G +QSG   EA+++F RM     E N  T  + +S+    + +  G  +H  ++
Sbjct: 633 WNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVL 692

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
           K G + +  + N+L+++Y+K GSI+ + + FN+M+ R+ +SW  +I+GY  HG G EAL+
Sbjct: 693 KTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALR 752

Query: 421 LFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLL 480
           LF EM+  G+ P+ +T + +LSAC+H GLVKE    F ++ K   +    EHY C VDLL
Sbjct: 753 LFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLL 812

Query: 481 GKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYT 540
           G++G+++ A + +  MP+     I  +L+SAC IH  +E+ E  AH L+E EPE++A Y 
Sbjct: 813 GRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYV 872

Query: 541 LLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           L+S + + S  W+  +   ++M+  G+ K  G S IE
Sbjct: 873 LISNIYAVSRQWIHRDWSRKLMKDXGVKKEPGRSWIE 909



 Score =  241 bits (614), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 153/527 (29%), Positives = 275/527 (52%), Gaps = 7/527 (1%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           Q   L+++ L   G+  N      V+KAC       ++  Q+H      G D+ P+++N 
Sbjct: 142 QVFCLFRRML-AEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANL 200

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           LI +Y+K    ESA ++F+ +  +D ++W ++I+  +QNG    ++ +F +M+       
Sbjct: 201 LIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPT 260

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
             +L+ ++S  ++I   ELG Q+H LVI  G F    +V   L+ LYS+    + A R+F
Sbjct: 261 PYVLSSVLSASTKIQLFELGEQLHCLVIKWG-FHSETYVCNGLVALYSRSRKLISAERIF 319

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
             M  R+ VS+ ++ISG +     D  ++LF  MQR+ +KP  +T+  +L ACA +  L 
Sbjct: 320 STMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALH 379

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
            G  +H +A   G   D  L  +L+ +Y +C + +  A   F  T+ +++V+W+ ++  Y
Sbjct: 380 KGMQLHSHAIKAGMSADIILEGSLLDLYSKCAD-VETAHKFFLXTETENIVLWNVMLVAY 438

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
            Q  +LS++ ++F +M++E + PN  T  +IL +CT    L  G  +H +++K G   +V
Sbjct: 439 GQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNV 498

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
            + + L++MY+K G +  + +I   +   D VSWT +I+GY  H    EALQLF EM+  
Sbjct: 499 YVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYR 558

Query: 429 GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIA-LAIEHYACYVDLLGKSGKIE 487
           G++ D I   + +SAC     +++ + +          A L+I +    + L  + G+I+
Sbjct: 559 GIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINN--ALISLYARCGRIQ 616

Query: 488 DACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPE 534
           +A      +  K +    +SLVS     G  E A  +  +++  E E
Sbjct: 617 EAYLAFEKIGDKNNIS-WNSLVSGLAQSGYFEEALQVFVRMLRTEAE 662



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 125/454 (27%), Positives = 229/454 (50%), Gaps = 10/454 (2%)

Query: 48  LQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQN 107
           ++LHC   KSG D +P++ +SL+  Y +      A ++FDE   R   SWN +I+ F   
Sbjct: 78  MRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQ 137

Query: 108 GFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELG--RQIHALVIVDGSFELSV 165
               +   +FR M   G        AG++  C   G++     +Q+H+     G F+ S 
Sbjct: 138 KSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVG-GDIAFNYVKQVHSRTFYYG-FDSSP 195

Query: 166 FVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
            V+  L+DLYSK  +   A +VF  + +++ V+W AMISG   +   +  I LF  M   
Sbjct: 196 LVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHAS 255

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
            + PT   L+ VL A  +++    G+ +H      GF  + ++   L+ +Y    + +  
Sbjct: 256 EIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISA 315

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
            RI F     +D V ++S+I G  Q G    A++LF++M+ + ++P+ +T+ ++LS+C  
Sbjct: 316 ERI-FSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACAS 374

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
              L  G+ +H + +KAG++ D+ +  +L+++YSKC  + ++H+ F      + V W  +
Sbjct: 375 VGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVM 434

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           +  YG      ++ ++F +MQ  G+ P+  T  +IL  C   G +   E +  +V+   K
Sbjct: 435 LVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVI---K 491

Query: 466 IALAIEHYACYV--DLLGKSGKIEDACKVVSTMP 497
               +  Y C V  D+  K G++  A +++  +P
Sbjct: 492 TGFQLNVYVCSVLIDMYAKYGQLALALRILRRLP 525



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 107/354 (30%), Positives = 175/354 (49%), Gaps = 4/354 (1%)

Query: 139 CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
           C   G L    ++H  +   G F+    +  +L+D Y +      A++VF++   R+  S
Sbjct: 68  CLTSGSLFETMRLHCRISKSG-FDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFS 126

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN-GKAIHGYA 257
           W  MI   +  ++      LFR M  EG+ P   T   VL AC       N  K +H   
Sbjct: 127 WNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRT 186

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
           +  GFD    ++  L+ +Y +    +  A+ +F    +KD+V W ++I G SQ+G   EA
Sbjct: 187 FYYGFDSSPLVANLLIDLYSK-NGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEA 245

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
           + LF  M    I P    L ++LS+ T+      G  +HC ++K G + +  + N L+ +
Sbjct: 246 ILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVAL 305

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           YS+   + S+ +IF+ M +RD VS+ +LISG    G+ + AL+LF +MQ   ++PD ITV
Sbjct: 306 YSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITV 365

Query: 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACK 491
            ++LSAC   G + +   L ++ +K    A  I      +DL  K   +E A K
Sbjct: 366 ASLLSACASVGALHKGMQLHSHAIKAGMSADIILE-GSLLDLYSKCADVETAHK 418



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 84/191 (43%), Gaps = 12/191 (6%)

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
           S+ ++L + M    +  N    L +L  C     L   + +HC I K+G + +  + ++L
Sbjct: 40  SKRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSL 99

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           ++ Y + G    + ++F+E + R   SW  +I  +       +   LF  M   G+ P+ 
Sbjct: 100 VDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNG 159

Query: 435 ITVLAILSACNHAGL----VKE--AETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIED 488
            T   +L AC    +    VK+  + T +        +A  +      +DL  K+G IE 
Sbjct: 160 YTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLL------IDLYSKNGYIES 213

Query: 489 ACKVVSTMPMK 499
           A KV + + MK
Sbjct: 214 AKKVFNCICMK 224


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 186/532 (34%), Positives = 303/532 (56%), Gaps = 3/532 (0%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G ++H  AL+   D+D +++  L+ MYAK  + E A QLF  +  RD ++W++II    Q
Sbjct: 348 GKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQ 407

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
            G+   +L +F+EM           L  I+  C+ +  L+LG+ IH    V    +  + 
Sbjct: 408 TGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFT-VKADMDSDLS 466

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
             TAL+ +Y+KC  +  AL  F +M  R+ V+W ++I+G     +    ID+F  ++   
Sbjct: 467 TGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSA 526

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           + P   T+  V+ ACA L DL  G  IHG     GF+ D H+  AL+ MY +C  +L  A
Sbjct: 527 INPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCG-SLPSA 585

Query: 287 RIIFERTK-VKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
             +F +T   KD V W+ II  Y Q+G   EA+  F +MRLE   PNSVT +++L +   
Sbjct: 586 EFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAY 645

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
            +    G+  H  I++ G   +  +GN+L++MY+KCG +  S ++FNEM  +D VSW  +
Sbjct: 646 LAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAM 705

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           +SGY  HG+G+ A+ LF  MQES V+ D+++ +++LSAC H GLV+E   +F+++  +  
Sbjct: 706 LSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYH 765

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
           I   +EHYAC VDLLG++G  ++    +  MP++P   +  +L+ +CR+H  +++ E+  
Sbjct: 766 IKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVAL 825

Query: 526 HQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
             L++ EP N A++ +LS + ++SG W  A +    M   GL K+ G S +E
Sbjct: 826 DHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVE 877



 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 132/436 (30%), Positives = 229/436 (52%), Gaps = 9/436 (2%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           S  Y+N    P ++ +C     H +  LQ+H   + SG      I++ LI++Y+ F K +
Sbjct: 26  SSTYTNYLHYPRLLSSC----KHLNPLLQIHAQIIVSGFKHHHSITH-LINLYSLFHKCD 80

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
            A  +FD  P    I WNS+I  +T++  Y  +LEM+  M   G          ++  C+
Sbjct: 81  LARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACT 140

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
               L+ G   H  +   G  E  VF+   L+D+YSK      A  VF++M  R+ V+W 
Sbjct: 141 GALNLQEGVWFHGEIDRRG-LERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWN 199

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
           AMI+G   S++    +D FR+MQ  GV+P+ V+L  +     +L ++   ++IHGY +  
Sbjct: 200 AMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVF-- 257

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
             DF   +S  L+ +Y +C + +  AR +F++   +D V W +++ GY+ +G   E ++L
Sbjct: 258 RRDFSSAVSNGLIDLYSKCGD-VDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLEL 316

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
           F +M+L  +  N V+ ++   +      L  G  +H   ++  ++ D+ +   LM MY+K
Sbjct: 317 FDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAK 376

Query: 381 CGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
           CG    + Q+F  +  RD V+W+ +I+     GY EEAL LF EMQ   ++P+ +T+++I
Sbjct: 377 CGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSI 436

Query: 441 LSACNHAGLVKEAETL 456
           L AC    L+K  +++
Sbjct: 437 LPACADLSLLKLGKSI 452


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  358 bits (920), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 192/571 (33%), Positives = 321/571 (56%), Gaps = 5/571 (0%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           ++Q  +L+ Q +   G+  +     S++KAC + +  +  G ++H    + G D +  + 
Sbjct: 287 FKQACNLF-QVMEEEGVQPDKVAFVSLLKACNHPEALEQ-GKRVHARMKEVGLDTEIYVG 344

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
            +L+SMY K    E A ++F+ +  R+ +SW ++I  F Q+G    +   F +M   G  
Sbjct: 345 TALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIE 404

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
                   I+  CS+   L+ GRQIH  +I  G +     V TALL +Y+KC   + A  
Sbjct: 405 PNRVTFMSILGACSRPSALKQGRQIHDRIIKAG-YITDDRVRTALLSMYAKCGSLMDARN 463

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VFE++  +N V+W AMI+  +  + YD  +  F+A+ +EG+KP   T T +L  C     
Sbjct: 464 VFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDA 523

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L  GK +       GF+ D H+  AL+ M+  C + L  A  +F     +D+V W++II 
Sbjct: 524 LELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGD-LMSAMNLFNDMPERDLVSWNTIIA 582

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           G+ Q G+   A   F  M+   ++P+ +T   +L++C     L+ G  +H  I +A L+ 
Sbjct: 583 GFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAALDC 642

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           DV +G  L++MY+KCGSI  +H +F+ +  ++  SWT++I+GY  HG G+EAL+LF +MQ
Sbjct: 643 DVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQ 702

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
           + GV+PD IT +  LSAC HAGL+KE    F + MK+  I   +EHY C VDL G++G +
Sbjct: 703 QEGVKPDWITFVGALSACAHAGLIKEGLHHFES-MKDFNIEPRMEHYGCMVDLFGRAGLL 761

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546
            +A + ++ M +KP +R+  +L+ AC++H  +E+AE +A + +E +P +   Y +LS + 
Sbjct: 762 HEAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKLELDPNDDGVYVILSNIY 821

Query: 547 SESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           + +G W    ++ +VM  +G+ K  G S IE
Sbjct: 822 AAAGMWKEVTKMRKVMLDRGVVKKPGQSWIE 852



 Score =  241 bits (616), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 127/398 (31%), Positives = 220/398 (55%), Gaps = 2/398 (0%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G ++H     S    D  + N LISMYAK     SA Q+FDEMP +D  SWN ++  + Q
Sbjct: 123 GERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQ 182

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           +  Y  +  +  +M   G          +++ C+    ++ G ++ +L I++  ++  +F
Sbjct: 183 HRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSL-ILNAGWDTDLF 241

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           V TAL++++ KC     AL+VF  +  R+ ++WT+MI+G    + +    +LF+ M+ EG
Sbjct: 242 VGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEG 301

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           V+P +V    +L AC     L  GK +H      G D + ++  AL+ MY +C  ++  A
Sbjct: 302 VQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCG-SMEDA 360

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
             +F   K ++VV W+++I G++Q G + EA   F++M    IEPN VT ++IL +C+R 
Sbjct: 361 LEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRP 420

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
           S L  G  +H  I+KAG   D  +  AL++MY+KCGS+  +  +F  ++ ++ V+W  +I
Sbjct: 421 SALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMI 480

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
           + Y  H   + A+  F  + + G++PD+ T  +IL+ C
Sbjct: 481 TAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVC 518



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 123/484 (25%), Positives = 243/484 (50%), Gaps = 10/484 (2%)

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
           FS   S  Q  + +  ++T   N+ +N  ++ G    ++ +   +      +  +  + +
Sbjct: 51  FSGSYSKGQGNEFVDIKNTQRANAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSL 110

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           + LC +   L  G +IH  +      +  +F+   L+ +Y+KC +   A ++F++M  ++
Sbjct: 111 LQLCIKHKNLGDGERIHNHIKF-SKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKD 169

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
             SW  ++ G +  + Y+    L   M ++GVKP + T   +L ACA+ +++  G  +  
Sbjct: 170 VYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFS 229

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
                G+D D  +  AL++M+ +C   +  A  +F     +D++ W+S+I G ++     
Sbjct: 230 LILNAGWDTDLFVGTALINMHIKCG-GVDDALKVFNNLPRRDLITWTSMITGLARHRQFK 288

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           +A  LF  M  E ++P+ V  +++L +C     L  G  VH  + + GL+ ++ +G AL+
Sbjct: 289 QACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALL 348

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           +MY+KCGS+  + ++FN +  R+ VSWT +I+G+  HG  EEA   F +M ESG+EP+ +
Sbjct: 349 SMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRV 408

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           T ++IL AC+    +K+   + + ++K   I       A  + +  K G + DA  V   
Sbjct: 409 TFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTA-LLSMYAKCGSLMDARNVFER 467

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLI-EAEPENAANYTLLSMVCS-----ES 549
           +  K +    +++++A   H + + A      L+ E    +++ +T +  VC      E 
Sbjct: 468 IS-KQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALEL 526

Query: 550 GNWL 553
           G W+
Sbjct: 527 GKWV 530


>gi|15232500|ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546753|sp|P0C898.1|PP232_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15130
 gi|332642102|gb|AEE75623.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  358 bits (920), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 196/554 (35%), Positives = 315/554 (56%), Gaps = 7/554 (1%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEM 89
           L S+++ C         G Q+HC  LKSGS  + + SN LI MY K  +P  AY++FD M
Sbjct: 9   LVSILRVCTRKGLSDQGG-QVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSM 67

Query: 90  PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGR 149
           P R+ +SW+++++    NG    SL +F EM   G        +  +  C  +  LE G 
Sbjct: 68  PERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGL 127

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
           QIH   +  G FE+ V V  +L+D+YSKC     A +VF ++V R+ +SW AMI+G + +
Sbjct: 128 QIHGFCLKIG-FEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHA 186

Query: 210 QNYDTGIDLFRAMQREGVK--PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGF--DFD 265
                 +D F  MQ   +K  P   TLT +L AC+    +  GK IHG+    GF     
Sbjct: 187 GYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSS 246

Query: 266 HHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR 325
             ++ +L+ +Y +C   L  AR  F++ K K ++ WSS+I GY+Q G+  EAM LF R++
Sbjct: 247 ATITGSLVDLYVKCG-YLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQ 305

Query: 326 LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSIT 385
               + +S  L +I+      + L  G  +    +K     + S+ N++++MY KCG + 
Sbjct: 306 ELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVD 365

Query: 386 SSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
            + + F EM  +D +SWT +I+GYG HG G++++++F EM    +EPD +  LA+LSAC+
Sbjct: 366 EAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACS 425

Query: 446 HAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRIL 505
           H+G++KE E LF+ +++   I   +EHYAC VDLLG++G++++A  ++ TMP+KP+  I 
Sbjct: 426 HSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIW 485

Query: 506 SSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAK 565
            +L+S CR+HG +E+ + +   L+  + +N ANY ++S +  ++G W        +   K
Sbjct: 486 QTLLSLCRVHGDIELGKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNARELGNIK 545

Query: 566 GLSKSYGFSRIENE 579
           GL K  G S +E E
Sbjct: 546 GLKKEAGMSWVEIE 559



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 120/226 (53%), Gaps = 3/226 (1%)

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           +   R  L  +L  C        G  +H Y    G   +   S  L+ MYC+C E L   
Sbjct: 2   IPNQRQNLVSILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAY 61

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
           + +F+    ++VV WS+++ G+  +GDL  ++ LFS M  + I PN  T    L +C   
Sbjct: 62  K-VFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLL 120

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
           + L  GL +H + +K G    V +GN+L++MYSKCG I  + ++F  +  R  +SW  +I
Sbjct: 121 NALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMI 180

Query: 407 SGYGFHGYGEEALQLFLEMQESGVE--PDAITVLAILSACNHAGLV 450
           +G+   GYG +AL  F  MQE+ ++  PD  T+ ++L AC+  G++
Sbjct: 181 AGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMI 226


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  358 bits (919), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 198/574 (34%), Positives = 327/574 (56%), Gaps = 8/574 (1%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V +  Y  ++    + L  SG+  +    P V+KAC         G ++HC  LK G + 
Sbjct: 125 VRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLAD----GEKMHCWVLKMGFEH 180

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D  ++ SLI +Y++F   E A+++F +MP RD  SWN++I+ F QNG    +L +   M 
Sbjct: 181 DVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMK 240

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
                +    ++ ++ +C+Q  ++  G  +H  VI  G  E  VFVS AL+++YSK    
Sbjct: 241 TEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHG-LESDVFVSNALINMYSKFGRL 299

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             A RVF+ M +R+ VSW ++I+    + +  T +  F+ M   G++P  +T+  +    
Sbjct: 300 QDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIF 359

Query: 242 AELRDLRNGKAIHGYAYCCGF-DFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
            +L D R G+A+HG+   C + + D  +  AL++MY +   ++  AR +FE+   +DV+ 
Sbjct: 360 GQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLG-SIDCARAVFEQLPSRDVIS 418

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLER-IEPNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
           W+++I GY+Q+G  SEA+  ++ M   R I PN  T ++IL + +    L  G+ +H  +
Sbjct: 419 WNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRL 478

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEAL 419
           +K  L  DV +   L++MY KCG +  +  +F E+     V W  +IS  G HG+GE+AL
Sbjct: 479 IKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAIISSLGIHGHGEKAL 538

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479
           QLF +M+  GV+ D IT +++LSAC+H+GLV EA+  F+ + KE +I   ++HY C VDL
Sbjct: 539 QLFKDMRADGVKADHITFVSLLSACSHSGLVDEAQWCFDTMQKEYRIKPNLKHYGCMVDL 598

Query: 480 LGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANY 539
            G++G +E A  +VS MP++    I  +L++ACRIHG  E+    + +L+E + EN   Y
Sbjct: 599 FGRAGYLEKAYNLVSNMPIQADASIWGTLLAACRIHGNAELGTFASDRLLEVDSENVGYY 658

Query: 540 TLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGF 573
            LLS + +  G W GA +V  + R +GL K+ G+
Sbjct: 659 VLLSNIYANVGKWEGAVKVRSLARDRGLRKTPGW 692



 Score =  228 bits (581), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 156/523 (29%), Positives = 273/523 (52%), Gaps = 17/523 (3%)

Query: 33  VIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYR 92
           V ++C    T+ +   QLH   L  G   D V+   L+++YA       +   F  +  +
Sbjct: 57  VFRSC----TNINVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRK 112

Query: 93  DTISWNSIINCFTQNGFYVRSLEMFREMY-LCGFVLKAELLAGIISLCSQIGELELGRQI 151
           +  SWNS+++ + + G Y  S++   E+  L G          ++  C  + +   G ++
Sbjct: 113 NIFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLAD---GEKM 169

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQN 211
           H  V+  G FE  V+V+ +L+ LYS+     +A +VF  M +R+  SW AMISG   + N
Sbjct: 170 HCWVLKMG-FEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGN 228

Query: 212 YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAA 271
               + +   M+ E VK   VT++ +L  CA+  D+  G  +H Y    G + D  +S A
Sbjct: 229 VAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNA 288

Query: 272 LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP 331
           L++MY +    L  A+ +F+  +V+D+V W+SII  Y Q+ D   A+  F  M    + P
Sbjct: 289 LINMYSKFGR-LQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRP 347

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG-LNFDVSIGNALMNMYSKCGSITSSHQI 390
           + +T++++ S   + S    G  VH ++++   L  D+ IGNAL+NMY+K GSI  +  +
Sbjct: 348 DLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAV 407

Query: 391 FNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES-GVEPDAITVLAILSACNHAGL 449
           F ++ +RD +SW TLI+GY  +G   EA+  +  M+E   + P+  T ++IL A +H G 
Sbjct: 408 FEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGA 467

Query: 450 VKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLV 509
           +++   +   ++K   + L +    C +D+ GK G++EDA  +   +P + S    ++++
Sbjct: 468 LQQGMKIHGRLIK-NCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVP-WNAII 525

Query: 510 SACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV--CSESG 550
           S+  IHG  E A  L   +  A+   A + T +S++  CS SG
Sbjct: 526 SSLGIHGHGEKALQLFKDM-RADGVKADHITFVSLLSACSHSG 567


>gi|224077710|ref|XP_002305373.1| predicted protein [Populus trichocarpa]
 gi|222848337|gb|EEE85884.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  358 bits (918), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 194/578 (33%), Positives = 333/578 (57%), Gaps = 6/578 (1%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           ++K  Y + + ++ + L       +    P VIKAC+     + +G  LH   L S   +
Sbjct: 97  IAKGDYFEAMKVFLEMLGSKDCCPDNYTYPFVIKACSELLLVE-YGRVLHGLTLVSKFGS 155

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
              + NSL++MY    + E A ++FD M  +  +SWN++IN + +NGF   +L +F +M 
Sbjct: 156 HLFVLNSLLAMYMNCGEVEEARKVFDAMKEKSVVSWNTMINGYFKNGFANTALVVFNQMV 215

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
             G  +    +  ++  C  + ELE+GR++H LV  +        VS AL+D+Y+KC   
Sbjct: 216 DSGVEIDGASVVSVLPACGYLKELEVGRRVHGLV--EEKVLGKKIVSNALVDMYAKCGSM 273

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             A  VF+ MV R+ VSWT+MI+G I + +  + + LF+ MQ EG++P  VT+ ++LLAC
Sbjct: 274 DEARLVFDNMVERDVVSWTSMINGYILNGDAKSALSLFKIMQIEGLRPNSVTIALILLAC 333

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A L +L++G+ +HG+        +  +  +L+ MY +C   L  +  +F RT  K  V W
Sbjct: 334 ASLNNLKDGRCLHGWVMKQRLYSEVAVETSLIDMYAKCN-CLGLSFSVFTRTSRKKTVPW 392

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           ++++ G   +   +EA+ LF +M +E +E N+ T  ++L +    + L     ++ Y+M+
Sbjct: 393 NALLSGCVHNKLATEAIGLFKKMLMEGVEINAATCNSLLPAYGILADLQPVNNINSYLMR 452

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA--RDFVSWTTLISGYGFHGYGEEAL 419
           +G   ++ +  +L+++YSKCGS+ S+H+IFN +    +D   W+ +I+GYG HG+GE A+
Sbjct: 453 SGFVSNIQVATSLIDIYSKCGSLESAHKIFNTIPVDVQDIFVWSIIIAGYGMHGHGETAV 512

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479
            LF +M +SGV+P+ +T  ++L +C+HAG+V +   LF  ++K+ +     +HY C VDL
Sbjct: 513 SLFKQMVQSGVKPNDVTFTSVLQSCSHAGMVDDGLYLFKFMLKDHQTIPNDDHYTCMVDL 572

Query: 480 LGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANY 539
           LG++G++++A  ++ TMP  P   +  +L+ AC +H  +E+ E+ A  L E EP N  NY
Sbjct: 573 LGRAGRMDEAYDLIKTMPFMPGHAVWGALLGACVMHENVELGEVAARWLFELEPGNTGNY 632

Query: 540 TLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            LL+ + +  G W  AE V + M   GL K+   S IE
Sbjct: 633 VLLAKLYAALGRWEDAENVRQRMDDIGLRKAPAHSLIE 670



 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 157/538 (29%), Positives = 269/538 (50%), Gaps = 38/538 (7%)

Query: 35  KACAYAQTHQHFGL--------QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLF 86
           K   Y    +H+G         QLH   + SG  +   I + L++ YA      +A +LF
Sbjct: 20  KTTQYQSLLKHYGAAQSLTSTKQLHAHLITSGLLSID-IRSVLVATYAHCGYVHNARKLF 78

Query: 87  DEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM----------YLCGFVLKAELLAGII 136
           DE+  R T+ +N +I  +   G Y  ++++F EM          Y   FV+KA       
Sbjct: 79  DELRQRGTLLYNFMIKMYIAKGDYFEAMKVFLEMLGSKDCCPDNYTYPFVIKA------- 131

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
             CS++  +E GR +H L +V   F   +FV  +LL +Y  C     A +VF+ M  ++ 
Sbjct: 132 --CSELLLVEYGRVLHGLTLVS-KFGSHLFVLNSLLAMYMNCGEVEEARKVFDAMKEKSV 188

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           VSW  MI+G   +   +T + +F  M   GV+    ++  VL AC  L++L  G+ +HG 
Sbjct: 189 VSWNTMINGYFKNGFANTALVVFNQMVDSGVEIDGASVVSVLPACGYLKELEVGRRVHGL 248

Query: 257 A--YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
                 G      +S AL+ MY +C  ++  AR++F+    +DVV W+S+I GY  +GD 
Sbjct: 249 VEEKVLGKKI---VSNALVDMYAKCG-SMDEARLVFDNMVERDVVSWTSMINGYILNGDA 304

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
             A+ LF  M++E + PNSVT+  IL +C   + L  G  +H ++MK  L  +V++  +L
Sbjct: 305 KSALSLFKIMQIEGLRPNSVTIALILLACASLNNLKDGRCLHGWVMKQRLYSEVAVETSL 364

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           ++MY+KC  +  S  +F   + +  V W  L+SG   +    EA+ LF +M   GVE +A
Sbjct: 365 IDMYAKCNCLGLSFSVFTRTSRKKTVPWNALLSGCVHNKLATEAIGLFKKMLMEGVEINA 424

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS 494
            T  ++L A      ++    + + +M+   ++  I+     +D+  K G +E A K+ +
Sbjct: 425 ATCNSLLPAYGILADLQPVNNINSYLMRSGFVS-NIQVATSLIDIYSKCGSLESAHKIFN 483

Query: 495 TMPMK-PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPE-NAANYTLLSMVCSESG 550
           T+P+      + S +++   +HG  E A  L  Q++++  + N   +T +   CS +G
Sbjct: 484 TIPVDVQDIFVWSIIIAGYGMHGHGETAVSLFKQMVQSGVKPNDVTFTSVLQSCSHAG 541


>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
 gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
          Length = 706

 Score =  357 bits (917), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 188/559 (33%), Positives = 325/559 (58%), Gaps = 6/559 (1%)

Query: 23  LYSNTAILPSVIKACAYA----QTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSK 78
           + S+ A   SV  AC  +    +    +G QLH   ++SG D  P++ N+L+++Y+K  +
Sbjct: 102 MMSSEAKPDSVTFACVLSISCSEAMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQ 161

Query: 79  PESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISL 138
              A +LFD MP  D + WN +I  + QNGF   +  +F EM   G    +      +  
Sbjct: 162 LGDARKLFDMMPQIDLVVWNRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPS 221

Query: 139 CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
            ++   L+  ++IH  ++  G   L V++++AL+DLY KC   ++A ++F      + V 
Sbjct: 222 LAESSSLKQIKEIHGYIVRHGVI-LDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVI 280

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258
           +TAMISG + +      +++FR + ++ + P  +T + +L ACA L  ++ G+ +HGY  
Sbjct: 281 YTAMISGYVLNGMNKDALEIFRWLLQKKMIPNALTFSSILPACAGLAAIKLGRELHGYII 340

Query: 259 CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAM 318
               +    + +A+M+MY +C   L  A +IF R  +KD + W+SII  +SQ G   EA+
Sbjct: 341 KNELEEKCPVGSAIMNMYAKCGR-LDLAHLIFGRISIKDAICWNSIITSFSQDGKPEEAI 399

Query: 319 KLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMY 378
            LF +M +E ++ + VT+ A LS+C     L +G  +H +++K     D+   +AL+NMY
Sbjct: 400 YLFRQMGMEGVKYDCVTVSAALSACANIPALHYGKEIHGFMIKGAFESDLFDMSALINMY 459

Query: 379 SKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
           +KCG +  +  +FN M  ++ V+W ++I+ YG+HGY  ++L LF  M E G++PD IT L
Sbjct: 460 AKCGKLNIARLVFNLMQEKNEVAWNSIIAAYGYHGYLADSLALFHNMLEEGIQPDHITFL 519

Query: 439 AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPM 498
            ILS+C HAG V++    F  + +E  I   +EHYAC  DL G++G +++A +V+++MP 
Sbjct: 520 TILSSCGHAGQVEDGVRYFRCMTEEYGIPAQMEHYACMADLFGRAGHLDEAFEVITSMPF 579

Query: 499 KPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEV 558
            P+  +  +L+ ACR+HG +E+AE+ +  L++ EP+N+  Y LL+ V +++G W    ++
Sbjct: 580 PPAASVWGTLLGACRVHGNVELAEVASRYLLDLEPKNSGYYLLLTHVLADAGKWRSVHKI 639

Query: 559 WRVMRAKGLSKSYGFSRIE 577
             +M+ +G+ K  G S IE
Sbjct: 640 QHLMKERGVQKVPGCSWIE 658



 Score =  235 bits (600), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 158/543 (29%), Positives = 276/543 (50%), Gaps = 8/543 (1%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G++ +    P VIK C     +   G  +    L+ G D D  +++SLI +YA     E 
Sbjct: 5   GVFPDKYTFPPVIKCCT-GLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCIED 63

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A + FD+M  +D + WN +IN + Q G    ++++F++M        +   A ++S+   
Sbjct: 64  ARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISCS 123

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
              +E GRQ+H LV+  G  +    V   L+ +YSK      A ++F+ M   + V W  
Sbjct: 124 EAMVEYGRQLHGLVVRSG-LDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNR 182

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           MI G + +   D    LF  M   G+KP  +T T  L + AE   L+  K IHGY    G
Sbjct: 183 MIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHG 242

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
              D +L++AL+ +Y +C +A+   ++    TK  D+VI++++I GY  +G   +A+++F
Sbjct: 243 VILDVYLNSALIDLYFKCRDAVMACKMFNLSTKF-DIVIYTAMISGYVLNGMNKDALEIF 301

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
             +  +++ PN++T  +IL +C   + +  G  +H YI+K  L     +G+A+MNMY+KC
Sbjct: 302 RWLLQKKMIPNALTFSSILPACAGLAAIKLGRELHGYIIKNELEEKCPVGSAIMNMYAKC 361

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
           G +  +H IF  ++ +D + W ++I+ +   G  EEA+ LF +M   GV+ D +TV A L
Sbjct: 362 GRLDLAHLIFGRISIKDAICWNSIITSFSQDGKPEEAIYLFRQMGMEGVKYDCVTVSAAL 421

Query: 442 SACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPS 501
           SAC +   +   + + +  M +      +   +  +++  K GK+  A  V + M  K  
Sbjct: 422 SACANIPALHYGKEI-HGFMIKGAFESDLFDMSALINMYAKCGKLNIARLVFNLMQEKNE 480

Query: 502 TRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLSMVCSESGNWLGAEEVW 559
               +S+++A   HG L  +  L H ++E   +P++    T+LS  C  +G        +
Sbjct: 481 VA-WNSIIAAYGYHGYLADSLALFHNMLEEGIQPDHITFLTILS-SCGHAGQVEDGVRYF 538

Query: 560 RVM 562
           R M
Sbjct: 539 RCM 541



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 116/413 (28%), Positives = 213/413 (51%), Gaps = 12/413 (2%)

Query: 120 MYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH 179
           M  CG          +I  C+ +  + LG+ I  +++  G F+L +FV+++L+ LY+   
Sbjct: 1   MLGCGVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMG-FDLDMFVASSLIKLYADNG 59

Query: 180 HWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVL- 238
               A R F++M+ ++ V W  MI+G +     D+ I LF+ M     KP  VT   VL 
Sbjct: 60  CIEDARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLS 119

Query: 239 LACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDV 298
           ++C+E   +  G+ +HG     G DF   +   L+ +Y +  + L  AR +F+     D+
Sbjct: 120 ISCSEAM-VEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQ-LGDARKLFDMMPQIDL 177

Query: 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCY 358
           V+W+ +I GY Q+G + +A  LF+ M    I+P+S+T  + L S    S L     +H Y
Sbjct: 178 VVWNRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGY 237

Query: 359 IMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEA 418
           I++ G+  DV + +AL+++Y KC     + ++FN     D V +T +ISGY  +G  ++A
Sbjct: 238 IVRHGVILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDA 297

Query: 419 LQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK---EKKIALAIEHYAC 475
           L++F  + +  + P+A+T  +IL AC     +K    L   ++K   E+K  +     + 
Sbjct: 298 LEIFRWLLQKKMIPNALTFSSILPACAGLAAIKLGRELHGYIIKNELEEKCPVG----SA 353

Query: 476 YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
            +++  K G+++ A  +   + +K +    +S++++    G+ E A  L  Q+
Sbjct: 354 IMNMYAKCGRLDLAHLIFGRISIKDAI-CWNSIITSFSQDGKPEEAIYLFRQM 405


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  357 bits (917), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 196/576 (34%), Positives = 331/576 (57%), Gaps = 6/576 (1%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V    + + L L+++ +   G   N+     V++ CA      H G +LH   LK G++ 
Sbjct: 241 VQNGMFLEALDLFRR-MQSDGFSMNSYTTVGVLQVCAELAQLNH-GRELHAALLKCGTEF 298

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           + +  N+L+ MYA+    +SA ++F E+  +D ISWNS+++C+ QN  Y  +++ F EM 
Sbjct: 299 N-IQCNALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMV 357

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
             GF      +  ++S    +G L  GR++HA   V    +  + ++  L+D+Y KC+  
Sbjct: 358 QNGFNPDHACIVSLLSAVGHLGRLINGREVHAYA-VKQRLDSDLQIANTLMDMYIKCYSV 416

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             + RVF++M I++ VSWT +I+    S  Y   I  FR  Q+EG+K   + +  +L AC
Sbjct: 417 ECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEAC 476

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           + L+ +   K +H YA   G   D  L   ++ +Y EC E  + A  IFE    KD+V W
Sbjct: 477 SGLKSISLLKQVHSYAIRNGL-LDLILKNRIIDIYGECGEVCY-ALNIFEMLDKKDIVTW 534

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           +S++  ++++G L EA+ LF +M    I+P+SV L+ IL +    S L+ G  +H ++++
Sbjct: 535 TSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIR 594

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
                + ++ ++L++MYS CGS+  + ++F+E   +D V WT +I+  G HG+G++A+ +
Sbjct: 595 GKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYI 654

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
           F  M E+GV PD ++ LA+L AC+H+ LV E +   + ++ + K+    EHYAC VDLLG
Sbjct: 655 FKRMLETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLG 714

Query: 482 KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTL 541
           +SG+ E+A K + +MP++P + +  +L+ ACRIH   E+A +   +L+E EP+N  NY L
Sbjct: 715 RSGQTEEAYKFIKSMPLEPKSVVWCALLGACRIHKNHELAMIATDKLLELEPDNPGNYVL 774

Query: 542 LSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +S V +E G W   +E+   M  +GL K    S IE
Sbjct: 775 VSNVFAEMGKWNNVKEIRTKMTEQGLRKDPACSWIE 810



 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 155/531 (29%), Positives = 263/531 (49%), Gaps = 20/531 (3%)

Query: 47  GLQLHCTALKSGSDADP---VISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINC 103
           G QLH  A+ +G+  D     ++  L+ MY K  +   A++LFD MP R   SWN++I  
Sbjct: 74  GRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGA 133

Query: 104 FTQNGFYVRSLEMFREMY----LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDG 159
              +G    ++ ++R M     + G       LA ++  C   G+   G ++H L +  G
Sbjct: 134 CLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSG 193

Query: 160 SFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI-RNEVSWTAMISGCIDSQNYDTGIDL 218
             + S  V+ AL+ +Y+KC     ALRVFE M   R+  SW + ISGC+ +  +   +DL
Sbjct: 194 -LDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDL 252

Query: 219 FRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCE 278
           FR MQ +G      T   VL  CAEL  L +G+ +H     CG +F+   +A L+ MY  
Sbjct: 253 FRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFNIQCNALLV-MYAR 311

Query: 279 CTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLA 338
           C       R +F     KD + W+S++  Y Q+   +EA+  F  M      P+   +++
Sbjct: 312 CGWVDSALR-VFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVS 370

Query: 339 ILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARD 398
           +LS+      L +G  VH Y +K  L+ D+ I N LM+MY KC S+  S ++F+ M  +D
Sbjct: 371 LLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKD 430

Query: 399 FVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFN 458
            VSWTT+I+ Y       EA+  F   Q+ G++ D + + +IL AC+    +   + + +
Sbjct: 431 HVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHS 490

Query: 459 NVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRIL--SSLVSACRIHG 516
             ++   + L +++    +D+ G+ G++   C  ++   M     I+  +S+V+    +G
Sbjct: 491 YAIRNGLLDLILKNR--IIDIYGECGEV---CYALNIFEMLDKKDIVTWTSMVNCFAENG 545

Query: 517 RLEVAEMLAHQLIEA--EPENAANYTLLSMVCSESGNWLGAEEVWRVMRAK 565
            L  A  L  +++ A  +P++ A   +L  +   S    G E    ++R K
Sbjct: 546 LLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGK 596


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  357 bits (917), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 197/575 (34%), Positives = 327/575 (56%), Gaps = 10/575 (1%)

Query: 5   HFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPV 64
           HF+E  +  + Q L  S +  +    P V+KAC         G ++HC A K G   +  
Sbjct: 197 HFHE-AIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD----GRKIHCWAFKLGFQWNVF 251

Query: 65  ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG 124
           ++ SLI MY++F     A  LFD+MP+RD  SWN++I+   QNG   ++L++  EM L G
Sbjct: 252 VAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEG 311

Query: 125 FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
             +    +  I+ +C Q+G++     IH  VI  G  E  +FVS AL+++Y+K  +   A
Sbjct: 312 IKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHG-LEFDLFVSNALINMYAKFGNLEDA 370

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
            + F+QM I + VSW ++I+    + +  T    F  MQ  G +P  +TL  +    A+ 
Sbjct: 371 RKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQS 430

Query: 245 RDLRNGKAIHGYAYCCGFDF-DHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
           RD +N +++HG+    G+   D  +  A++ MY +    L  A  +FE   VKDV+ W++
Sbjct: 431 RDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLG-LLDSAHKVFEIIPVKDVISWNT 489

Query: 304 IIRGYSQSGDLSEAMKLFSRMR-LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
           +I GY+Q+G  SEA++++  M   + I PN  T ++IL +      L  G+ +H  ++K 
Sbjct: 490 LITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKT 549

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
            L+ DV +   L+++Y KCG +  +  +F ++     V+W  +IS +G HG+ E+ L+LF
Sbjct: 550 NLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLF 609

Query: 423 LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGK 482
            EM + GV+PD +T +++LSAC+H+G V+E +  F  +M+E  I  +++HY C VDLLG+
Sbjct: 610 GEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCF-RLMQEYGIKPSLKHYGCMVDLLGR 668

Query: 483 SGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLL 542
           +G +E A   +  MP++P   I  +L+ ACRIHG +E+ +  + +L E + +N   Y LL
Sbjct: 669 AGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLL 728

Query: 543 SMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           S + +  G W G ++V  + R +GL K+ G+S IE
Sbjct: 729 SNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIE 763



 Score =  251 bits (642), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 164/536 (30%), Positives = 282/536 (52%), Gaps = 13/536 (2%)

Query: 40  AQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNS 99
           + T   F   LH   + +G      IS  L+++YA       +   FD++P +D  +WNS
Sbjct: 128 SSTKTPFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNS 187

Query: 100 IINCFTQNGFYVRSLEMFREMYLCGFVLKA-ELLAGIISLCSQIGELELGRQIHALVIVD 158
           +I+ +  NG +  ++  F ++ L   +         ++  C   G L  GR+IH      
Sbjct: 188 MISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVDGRKIHCWAFKL 244

Query: 159 GSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDL 218
           G F+ +VFV+ +L+ +YS+     IA  +F+ M  R+  SW AMISG I + N    +D+
Sbjct: 245 G-FQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDV 303

Query: 219 FRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCE 278
              M+ EG+K   VT+  +L  C +L D+     IH Y    G +FD  +S AL++MY +
Sbjct: 304 LDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAK 363

Query: 279 CTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLA 338
               L  AR  F++  + DVV W+SII  Y Q+ D   A   F +M+L   +P+ +TL++
Sbjct: 364 FGN-LEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVS 422

Query: 339 ILSSCTRQSFLSHGLGVHCYIMKAG-LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR 397
           + S   +     +   VH +IM+ G L  DV IGNA+++MY+K G + S+H++F  +  +
Sbjct: 423 LASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVK 482

Query: 398 DFVSWTTLISGYGFHGYGEEALQLFLEMQE-SGVEPDAITVLAILSACNHAGLVKEAETL 456
           D +SW TLI+GY  +G   EA++++  M+E   + P+  T ++IL A  H G +++   +
Sbjct: 483 DVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKI 542

Query: 457 FNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG 516
              V+K   + L +    C +D+ GK G++ DA  +   +P + S+   ++++S   IHG
Sbjct: 543 HGRVIK-TNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQE-SSVTWNAIISCHGIHG 600

Query: 517 RLEVAEMLAHQLIE--AEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKS 570
             E    L  ++++   +P++    +LLS  CS SG     +  +R+M+  G+  S
Sbjct: 601 HAEKTLKLFGEMLDEGVKPDHVTFVSLLS-ACSHSGFVEEGKWCFRLMQEYGIKPS 655


>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840 [Vitis vinifera]
          Length = 713

 Score =  357 bits (916), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 192/569 (33%), Positives = 309/569 (54%), Gaps = 3/569 (0%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           + L L+K     SGL  +  IL    KAC    +  ++G  LH  A+K+G      + ++
Sbjct: 98  EALLLFKNMRVESGLRIDPFILSLAHKACGL-NSDVNYGELLHGYAVKTGLVNSVFVGSA 156

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           L+ MY K  K     ++F EMP R+ +SW +II    + G+   +L  F EM+       
Sbjct: 157 LLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYD 216

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
           +   A  +  C+  G L  GR+IHA  +  G F++S FV+  L  +Y+KC      L +F
Sbjct: 217 SYTFAIALKACADSGALNYGREIHAQAMKKG-FDVSSFVANTLATMYNKCGKLEYGLTLF 275

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
           E+M +R+ VSWT +I+  +     +  +  F  M+   V P   T   V+  CA L  + 
Sbjct: 276 EKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIE 335

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
            G+ +H      G      +  ++M MY +C + L  + +IF     +D+V WS+II GY
Sbjct: 336 WGEQLHALILHLGLAASLSVENSIMTMYAKCGQ-LTSSSVIFHEMTRRDIVSWSTIIAGY 394

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
           SQ G +SEA +L S MR+E  +P    L ++LS+C   + L HG  +H Y++  GL    
Sbjct: 395 SQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTA 454

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
            + +AL+NMY KCGSI  + +IF+     D VSWT +I+GY  HGY  E + LF ++   
Sbjct: 455 MVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRV 514

Query: 429 GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIED 488
           G+ PD++T + +LSAC+HAGLV      FN + K+ +I+ + EHY C +DLL ++G++ D
Sbjct: 515 GLRPDSVTFIGVLSACSHAGLVDLGFRYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSD 574

Query: 489 ACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSE 548
           A  ++  MP      + S+L+ ACR+HG +E     A ++++ EP  A  +  L+ + + 
Sbjct: 575 AEHMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIYAS 634

Query: 549 SGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            G W  A ++ ++M++KG+ K  G+S I+
Sbjct: 635 KGKWREAADIRKLMKSKGVIKEPGWSWIK 663



 Score =  225 bits (574), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 140/439 (31%), Positives = 225/439 (51%), Gaps = 12/439 (2%)

Query: 59  SDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFR 118
           S  D   SN  +    K     +A ++FD+M  +D ISW ++I+ +        +L +F+
Sbjct: 45  SQTDLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFK 104

Query: 119 EMYL-CGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSK 177
            M +  G  +   +L+     C    ++  G  +H   +  G    SVFV +ALLD+Y+K
Sbjct: 105 NMRVESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVN-SVFVGSALLDMYTK 163

Query: 178 CHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIV 237
                   RVF +M +RN VSWTA+I+G + +      +  F  M R  V+    T  I 
Sbjct: 164 NGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIA 223

Query: 238 LLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKD 297
           L ACA+   L  G+ IH  A   GFD    ++  L  MY +C + L     +FE+  ++D
Sbjct: 224 LKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGK-LEYGLTLFEKMSMRD 282

Query: 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHC 357
           VV W++II    Q G    A++ F RMR   + PN  T  A++S C   + +  G  +H 
Sbjct: 283 VVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHA 342

Query: 358 YIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEE 417
            I+  GL   +S+ N++M MY+KCG +TSS  IF+EM  RD VSW+T+I+GY   G+  E
Sbjct: 343 LILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSE 402

Query: 418 ALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYA--- 474
           A +L   M+  G +P    + ++LSAC +  +++  + L   V+     ++ +EH A   
Sbjct: 403 AFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVL-----SIGLEHTAMVL 457

Query: 475 -CYVDLLGKSGKIEDACKV 492
              +++  K G IE+A ++
Sbjct: 458 SALINMYCKCGSIEEASRI 476



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/236 (34%), Positives = 125/236 (52%), Gaps = 9/236 (3%)

Query: 280 TEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE---RIEPNSVTL 336
           T  L  AR +F++   KD + W+++I GY  + D SEA+ LF  MR+E   RI+P  ++L
Sbjct: 62  TGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILSL 121

Query: 337 LAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA 396
                +C   S +++G  +H Y +K GL   V +G+AL++MY+K G I    ++F+EM  
Sbjct: 122 AH--KACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPM 179

Query: 397 RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETL 456
           R+ VSWT +I+G    GY +EAL  F EM  S VE D+ T    L AC  +G +     +
Sbjct: 180 RNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREI 239

Query: 457 FNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPS---TRILSSLV 509
               MK K   ++         +  K GK+E    +   M M+     T I+++LV
Sbjct: 240 HAQAMK-KGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLV 294



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 5/149 (3%)

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           D+   N  +    K G + ++ ++F++M+ +D +SWTTLISGY       EAL LF  M+
Sbjct: 48  DLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMR 107

Query: 427 -ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
            ESG+  D   +     AC     V   E L    +K   +  ++   +  +D+  K+GK
Sbjct: 108 VESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVN-SVFVGSALLDMYTKNGK 166

Query: 486 IEDACKVVSTMPMKPS---TRILSSLVSA 511
           I +  +V   MPM+     T I++ LV A
Sbjct: 167 IFEGRRVFHEMPMRNVVSWTAIITGLVRA 195


>gi|357154827|ref|XP_003576915.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like, partial [Brachypodium distachyon]
          Length = 735

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 189/558 (33%), Positives = 328/558 (58%), Gaps = 5/558 (0%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           SG+  N A L SV+ AC   Q    FGL +H   LK+G D+   + N+L+ MY KF   E
Sbjct: 171 SGVPVNVASLVSVVPACGVEQ-EGGFGLGVHGLVLKTGLDSIVNLGNALVDMYGKFGHVE 229

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
           ++ ++F+ MP R+ +SWNS I CF   G Y   L +FR M   GF+  +  L+ ++    
Sbjct: 230 ASMKVFEGMPERNEVSWNSAIGCFLNAGLYGDVLALFRGMSERGFMPGSITLSSLLPALV 289

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
           ++G  +LGR++H   I   + EL +FV+ +L+D+Y+K      A  VFE++ +RN VSW 
Sbjct: 290 ELGYFDLGREVHGYSI-KRAMELDIFVANSLVDMYAKFGSLEKACAVFEKIEVRNVVSWN 348

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
           AMI+  + +        L   MQ++G  P  +TL  +L AC+ +  L+ GK IH ++   
Sbjct: 349 AMIANLVQNGAESEAFGLVIKMQKDGECPNSITLVNLLPACSRMASLKTGKQIHAWSIRT 408

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
           G  FD  +S AL+ MY +C + L  A+ IF+ ++ KD V ++++I GYSQS    E++ L
Sbjct: 409 GLMFDLFISNALIDMYAKCGQ-LRLAQSIFDLSE-KDDVSYNTLILGYSQSPWSFESLNL 466

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
           F ++    IE ++++ +  L++CT  S    G  +H  +++  L+    + N L+ +Y+K
Sbjct: 467 FKQLSSVGIEYDAISFMGALTACTNLSSFKQGKEIHGVLVRRLLSNHPFLANTLLGLYTK 526

Query: 381 CGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
            G + ++ +IFN +  +D  SW  +I GYG HG  + A  LF  M++ GV  D ++ +A+
Sbjct: 527 GGMLDTASKIFNRIKEKDVASWNNMIMGYGMHGQIDAAFHLFDLMKDHGVTYDHVSYIAV 586

Query: 441 LSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKP 500
           LS C+H GLV+  +  F++++ +  +     HYAC VDLLG+SG++ ++ +++  MP   
Sbjct: 587 LSVCSHGGLVERGKKYFSHMLAQ-NLEPQQMHYACMVDLLGRSGQLTESVEIILDMPFHA 645

Query: 501 STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWR 560
           ++ +  +L+ ACRIHG +E+A+  A  L E +PE++  Y++L  + +E+G W  A ++  
Sbjct: 646 NSDVWGALLGACRIHGNIELAQYAADHLFELKPEHSGYYSVLRNMYAEAGRWNEAHKIRT 705

Query: 561 VMRAKGLSKSYGFSRIEN 578
           +M+++ + K+  +S +++
Sbjct: 706 LMKSRKVQKNPAYSWVQS 723



 Score =  254 bits (649), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 160/512 (31%), Positives = 269/512 (52%), Gaps = 20/512 (3%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           GL+LH  AL+SG  AD    N+L++ YA       A ++FDEMP RD +SWNS+++ F  
Sbjct: 95  GLELHAAALRSGHLADVFAGNTLVAFYAACGHAGDARRVFDEMPARDVVSWNSLVSSFLA 154

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           N  +  + +    M   G  +    L  ++  C    E   G  +H LV+  G  +  V 
Sbjct: 155 NKMFDDARQALLSMMRSGVPVNVASLVSVVPACGVEQEGGFGLGVHGLVLKTG-LDSIVN 213

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           +  AL+D+Y K  H   +++VFE M  RNEVSW + I   +++  Y   + LFR M   G
Sbjct: 214 LGNALVDMYGKFGHVEASMKVFEGMPERNEVSWNSAIGCFLNAGLYGDVLALFRGMSERG 273

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
             P  +TL+ +L A  EL     G+ +HGY+     + D  ++ +L+ MY +   +L  A
Sbjct: 274 FMPGSITLSSLLPALVELGYFDLGREVHGYSIKRAMELDIFVANSLVDMYAKFG-SLEKA 332

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
             +FE+ +V++VV W+++I    Q+G  SEA  L  +M+ +   PNS+TL+ +L +C+R 
Sbjct: 333 CAVFEKIEVRNVVSWNAMIANLVQNGAESEAFGLVIKMQKDGECPNSITLVNLLPACSRM 392

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
           + L  G  +H + ++ GL FD+ I NAL++MY+KCG +  +  IF +++ +D VS+ TLI
Sbjct: 393 ASLKTGKQIHAWSIRTGLMFDLFISNALIDMYAKCGQLRLAQSIF-DLSEKDDVSYNTLI 451

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
            GY    +  E+L LF ++   G+E DAI+ +  L+AC +    K+ + +   +++    
Sbjct: 452 LGYSQSPWSFESLNLFKQLSSVGIEYDAISFMGALTACTNLSSFKQGKEIHGVLVRR--- 508

Query: 467 ALAIEHYACYVDLLG---KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEM 523
            L   H      LLG   K G ++ A K+ + +  K      ++++    +HG+++    
Sbjct: 509 -LLSNHPFLANTLLGLYTKGGMLDTASKIFNRIKEKDVAS-WNNMIMGYGMHGQIDA--- 563

Query: 524 LAHQLIEAEPENAANYTLLSM-----VCSESG 550
            A  L +   ++   Y  +S      VCS  G
Sbjct: 564 -AFHLFDLMKDHGVTYDHVSYIAVLSVCSHGG 594



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 130/284 (45%), Gaps = 4/284 (1%)

Query: 218 LFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAI--HGYAYCCGFDFDHHLSAALMHM 275
           ++  M R GV P   T    L A A        K +  H  A   G   D      L+  
Sbjct: 61  VYNHMLRSGVSPDDRTFPFALHAAAAAAQAHPAKGLELHAAALRSGHLADVFAGNTLVAF 120

Query: 276 YCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVT 335
           Y  C  A   AR +F+    +DVV W+S++  +  +    +A +    M    +  N  +
Sbjct: 121 YAACGHA-GDARRVFDEMPARDVVSWNSLVSSFLANKMFDDARQALLSMMRSGVPVNVAS 179

Query: 336 LLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA 395
           L++++ +C  +     GLGVH  ++K GL+  V++GNAL++MY K G + +S ++F  M 
Sbjct: 180 LVSVVPACGVEQEGGFGLGVHGLVLKTGLDSIVNLGNALVDMYGKFGHVEASMKVFEGMP 239

Query: 396 ARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAET 455
            R+ VSW + I  +   G   + L LF  M E G  P +IT+ ++L A    G       
Sbjct: 240 ERNEVSWNSAIGCFLNAGLYGDVLALFRGMSERGFMPGSITLSSLLPALVELGYFDLGRE 299

Query: 456 LFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           +    +K + + L I      VD+  K G +E AC V   + ++
Sbjct: 300 VHGYSIK-RAMELDIFVANSLVDMYAKFGSLEKACAVFEKIEVR 342



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 108/222 (48%), Gaps = 18/222 (8%)

Query: 284 HPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVT--LLAILS 341
           HP R+       +   +W+S+ R  S +   +EA+ +++ M    + P+  T       +
Sbjct: 32  HPLRL-------RSAFLWNSLSRALSSASLPTEALLVYNHMLRSGVSPDDRTFPFALHAA 84

Query: 342 SCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS 401
           +   Q+  + GL +H   +++G   DV  GN L+  Y+ CG    + ++F+EM ARD VS
Sbjct: 85  AAAAQAHPAKGLELHAAALRSGHLADVFAGNTLVAFYAACGHAGDARRVFDEMPARDVVS 144

Query: 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLF---- 457
           W +L+S +  +   ++A Q  L M  SGV  +  ++++++ AC       E E  F    
Sbjct: 145 WNSLVSSFLANKMFDDARQALLSMMRSGVPVNVASLVSVVPACG-----VEQEGGFGLGV 199

Query: 458 NNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           + ++ +  +   +      VD+ GK G +E + KV   MP +
Sbjct: 200 HGLVLKTGLDSIVNLGNALVDMYGKFGHVEASMKVFEGMPER 241


>gi|224098357|ref|XP_002311156.1| predicted protein [Populus trichocarpa]
 gi|222850976|gb|EEE88523.1| predicted protein [Populus trichocarpa]
          Length = 535

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 181/531 (34%), Positives = 303/531 (57%), Gaps = 3/531 (0%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G ++H  A + G D+D  ++  +++MYA+  + ++A QLF E+  RD ++W++II  F Q
Sbjct: 7   GTEIHDFARQQGIDSDVAVATPIMTMYARCGEVDTAKQLFQEIKGRDLVAWSAIIAAFVQ 66

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           +G+   +L +FR M   G      +L   +  C+++  L+LG+ +H    V  + +L + 
Sbjct: 67  SGYPQEALSLFRSMQNEGLQANKVILLSSLPACAEVSSLKLGKSMHCCA-VKANVDLDIS 125

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           V TAL+ +Y+KC  + +AL +F +M  ++ V+W AMI+G          +++F  +Q   
Sbjct: 126 VGTALVSMYAKCGFFALALTLFNRMPCKDVVTWNAMINGYAQIGEPFPALEMFHKLQLSE 185

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           + P   T+  +L A A L DL  G  IHG    CGF+ + H+  AL+ MY +C  +L  A
Sbjct: 186 LNPNSGTMVGLLPAFALLNDLDQGSCIHGKIIKCGFESECHVKTALIDMYAKCG-SLSGA 244

Query: 287 RIIFERTKV-KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
             +F RT   KD V W+ +I GY  SG   +A   F +M+LE I+PN VT++ +L +   
Sbjct: 245 EFLFHRTGCRKDEVSWNVMIAGYMHSGHAIDAFSAFCQMKLENIQPNIVTIVTVLPAVAH 304

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
            S L  G+ +H Y+++ G      +GN L++MY+KCG +  S +IF+EM  +D VSW  +
Sbjct: 305 LSALRAGMTLHAYVIRMGFQSKTPVGNCLIDMYAKCGWLDHSEKIFHEMKNKDTVSWNVM 364

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           ++GY  HG G  A++LF  MQ+S +  D+ + + +LSAC HAGL+ E   +F+++ K+ +
Sbjct: 365 LAGYAVHGRGSCAIELFSRMQDSEIRLDSFSFINVLSACRHAGLIGEGRKIFDSMSKQHQ 424

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
           +   +EHYAC  DLLG++G   +   ++ +MPM+P   +  +L+ A  +H  +++AE   
Sbjct: 425 LEPDLEHYACMADLLGRAGLFNEVLDLIKSMPMEPDAGVWGALLGASTMHSNVQLAEFAL 484

Query: 526 HQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
           H L + E +N  +Y  LS   + SG W         +   GL KS G+S +
Sbjct: 485 HHLDKLEHKNLTHYAALSNTYARSGRWADVGNTRSKITKTGLRKSPGYSWV 535



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 74/200 (37%), Positives = 118/200 (59%), Gaps = 1/200 (0%)

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
           +R L  G  IH +A   G D D  ++  +M MY  C E +  A+ +F+  K +D+V WS+
Sbjct: 1   MRALGRGTEIHDFARQQGIDSDVAVATPIMTMYARCGE-VDTAKQLFQEIKGRDLVAWSA 59

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           II  + QSG   EA+ LF  M+ E ++ N V LL+ L +C   S L  G  +HC  +KA 
Sbjct: 60  IIAAFVQSGYPQEALSLFRSMQNEGLQANKVILLSSLPACAEVSSLKLGKSMHCCAVKAN 119

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
           ++ D+S+G AL++MY+KCG    +  +FN M  +D V+W  +I+GY   G    AL++F 
Sbjct: 120 VDLDISVGTALVSMYAKCGFFALALTLFNRMPCKDVVTWNAMINGYAQIGEPFPALEMFH 179

Query: 424 EMQESGVEPDAITVLAILSA 443
           ++Q S + P++ T++ +L A
Sbjct: 180 KLQLSELNPNSGTMVGLLPA 199



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 93/195 (47%), Gaps = 2/195 (1%)

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
           L  G  +H +  + G++ DV++   +M MY++CG + ++ Q+F E+  RD V+W+ +I+ 
Sbjct: 4   LGRGTEIHDFARQQGIDSDVAVATPIMTMYARCGEVDTAKQLFQEIKGRDLVAWSAIIAA 63

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468
           +   GY +EAL LF  MQ  G++ + + +L+ L AC     +K  +++    +K   + L
Sbjct: 64  FVQSGYPQEALSLFRSMQNEGLQANKVILLSSLPACAEVSSLKLGKSMHCCAVK-ANVDL 122

Query: 469 AIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAH-Q 527
            I      V +  K G    A  + + MP K      + +    +I       EM    Q
Sbjct: 123 DISVGTALVSMYAKCGFFALALTLFNRMPCKDVVTWNAMINGYAQIGEPFPALEMFHKLQ 182

Query: 528 LIEAEPENAANYTLL 542
           L E  P +     LL
Sbjct: 183 LSELNPNSGTMVGLL 197


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 197/575 (34%), Positives = 327/575 (56%), Gaps = 10/575 (1%)

Query: 5   HFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPV 64
           HF+E  +  + Q L  S +  +    P V+KAC         G ++HC A K G   +  
Sbjct: 197 HFHE-AIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD----GRRIHCWAFKLGFQWNVF 251

Query: 65  ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG 124
           ++ SLI MY++F     A  LFD+MP+RD  SWN++I+   QNG   ++L++  EM L G
Sbjct: 252 VAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEG 311

Query: 125 FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
             +    +  I+ +C Q+G++     IH  VI  G  E  +FVS AL+++Y+K  +   A
Sbjct: 312 IKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHG-LEFDLFVSNALINMYAKFGNLEDA 370

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
            + F+QM I + VSW ++I+    + +  T    F  MQ  G +P  +TL  +    A+ 
Sbjct: 371 RKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQS 430

Query: 245 RDLRNGKAIHGYAYCCGFDF-DHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
           RD +N +++HG+    G+   D  +  A++ MY +    L  A  +FE   VKDV+ W++
Sbjct: 431 RDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLG-LLDSAHKVFEIILVKDVISWNT 489

Query: 304 IIRGYSQSGDLSEAMKLFSRMR-LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
           +I GY+Q+G  SEA++++  M   + I PN  T ++IL +      L  G+ +H  ++K 
Sbjct: 490 LITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKT 549

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
            L+ DV +   L+++Y KCG +  +  +F ++     V+W  +IS +G HG+ E+ L+LF
Sbjct: 550 NLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLF 609

Query: 423 LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGK 482
            EM + GV+PD +T +++LSAC+H+G V+E +  F  +M+E  I  +++HY C VDLLG+
Sbjct: 610 GEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCF-RLMQEYGIKPSLKHYGCMVDLLGR 668

Query: 483 SGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLL 542
           +G +E A   +  MP++P   I  +L+ ACRIHG +E+ +  + +L E + +N   Y LL
Sbjct: 669 AGYLEMAYGFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLL 728

Query: 543 SMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           S + +  G W G ++V  + R +GL K+ G+S IE
Sbjct: 729 SNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIE 763



 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 164/536 (30%), Positives = 282/536 (52%), Gaps = 13/536 (2%)

Query: 40  AQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNS 99
           + T   F   LH   + +G      IS  L+++YA       +   FD++P +D  +WNS
Sbjct: 128 SSTKTPFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNS 187

Query: 100 IINCFTQNGFYVRSLEMFREMYLCGFVLKA-ELLAGIISLCSQIGELELGRQIHALVIVD 158
           +I+ +  NG +  ++  F ++ L   +         ++  C   G L  GR+IH      
Sbjct: 188 MISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVDGRRIHCWAFKL 244

Query: 159 GSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDL 218
           G F+ +VFV+ +L+ +YS+     IA  +F+ M  R+  SW AMISG I + N    +D+
Sbjct: 245 G-FQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDV 303

Query: 219 FRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCE 278
              M+ EG+K   VT+  +L  C +L D+     IH Y    G +FD  +S AL++MY +
Sbjct: 304 LDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAK 363

Query: 279 CTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLA 338
               L  AR  F++  + DVV W+SII  Y Q+ D   A   F +M+L   +P+ +TL++
Sbjct: 364 FGN-LEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVS 422

Query: 339 ILSSCTRQSFLSHGLGVHCYIMKAG-LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR 397
           + S   +     +   VH +IM+ G L  DV IGNA+++MY+K G + S+H++F  +  +
Sbjct: 423 LASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVK 482

Query: 398 DFVSWTTLISGYGFHGYGEEALQLFLEMQE-SGVEPDAITVLAILSACNHAGLVKEAETL 456
           D +SW TLI+GY  +G   EA++++  M+E   + P+  T ++IL A  H G +++   +
Sbjct: 483 DVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRI 542

Query: 457 FNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG 516
              V+K   + L +    C +D+ GK G++ DA  +   +P + S+   ++++S   IHG
Sbjct: 543 HGRVIK-TNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQE-SSVTWNAIISCHGIHG 600

Query: 517 RLEVAEMLAHQLIE--AEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKS 570
             E    L  ++++   +P++    +LLS  CS SG     +  +R+M+  G+  S
Sbjct: 601 HAEKTLKLFGEMLDEGVKPDHVTFVSLLS-ACSHSGFVEEGKWCFRLMQEYGIKPS 655


>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 597

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 181/530 (34%), Positives = 313/530 (59%), Gaps = 3/530 (0%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKP-ESAYQLFDEMPYRDTISWNSIINCFTQN 107
           ++H   + +G   + ++S  LI      +   + A ++FD+MP RD   WN++I  +   
Sbjct: 47  RIHALVVTNGCGQNLLLSTKLIITACCLAPTMDYARKMFDQMPKRDVFLWNTLIRGYADA 106

Query: 108 GFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFV 167
           G    +L ++  M+  G          ++  C+ +  L  G+++H  ++  G F+  VFV
Sbjct: 107 GPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKEVHCNIVKHG-FDSDVFV 165

Query: 168 STALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV 227
            ++L+ +YS+    L    VF +MV+RN VSWTA+I+G + ++ +  G+ +FR M   G 
Sbjct: 166 QSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGT 225

Query: 228 KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPAR 287
           +P  VTL  VL ACA L  L  GK IHGY    G D D  L+ AL+ +Y +C   +  AR
Sbjct: 226 QPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALIALYGKCGN-VETAR 284

Query: 288 IIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQS 347
            +F+   V+++V W+++I  Y Q+   + A+KLF RM+ E+++ + +T+++++S+C    
Sbjct: 285 SLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVISACASLG 344

Query: 348 FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLIS 407
            L+ G  +H  + + GL  +VSI NAL++MY+KCG+I  + ++F  +  R  VSWT++I 
Sbjct: 345 ALNTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFERLPCRSVVSWTSMIG 404

Query: 408 GYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIA 467
               HG+GE+AL+LF  M++ GV+P++ T  A+ +AC H+GLV+E    F ++M++  I 
Sbjct: 405 ACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEGRKHFESMMRDYSIM 464

Query: 468 LAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQ 527
             +EH AC VDLLG++G + +A + +  MP++P   +  +L+ +CRIH  LE+AE++A +
Sbjct: 465 PGVEHCACMVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGALLGSCRIHSNLELAELVAEK 524

Query: 528 LIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           L   +P+    Y L+S + +E+G W  A  + ++M  + L K  G S +E
Sbjct: 525 LFLLDPQTVTFYVLMSNIYAEAGRWEDAARLRKLMEERELKKIPGHSLVE 574



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 137/469 (29%), Positives = 239/469 (50%), Gaps = 24/469 (5%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E+ L LY   +H +GL+ +    P V+++CA     +  G ++HC  +K G D+D  + +
Sbjct: 110 EEALALYSN-MHGAGLFPDNYTFPFVVRSCAVLSALRE-GKEVHCNIVKHGFDSDVFVQS 167

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           SL++MY++  +      +F EM  R+ +SW ++I  + QN ++   L +FREM   G   
Sbjct: 168 SLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGTQP 227

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
            A  L  ++  C+ +  L LG+ IH   I  G  +  V ++ AL+ LY KC +   A  +
Sbjct: 228 NAVTLVSVLPACAGLEFLNLGKLIHGYGIKLG-VDPDVSLTNALIALYGKCGNVETARSL 286

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F+ MV++N VSW AMI+    +      + LFR MQ E V    +T+  V+ ACA L  L
Sbjct: 287 FDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVISACASLGAL 346

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
             G+ +H      G + +  ++ AL+ MY +C   +  AR +FER   + VV W+S+I  
Sbjct: 347 NTGRWMHELVKRKGLEINVSITNALIDMYAKCGN-IDLAREVFERLPCRSVVSWTSMIGA 405

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
            +  G   +A+KLFSRM+ E ++PNS T  A+ ++C     +  G      +M+   ++ 
Sbjct: 406 CASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEGRKHFESMMR---DYS 462

Query: 368 VSIG----NALMNMYSKCGSITSSHQIFNEMAARDFVS-WTTLISGYGFHGYGE----EA 418
           +  G      ++++  + GS+  +++  ++M     VS W  L+     H   E     A
Sbjct: 463 IMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGALLGSCRIHSNLELAELVA 522

Query: 419 LQLFLEMQESGVEPDAITVLAILSAC-NHAGLVKEAETLFNNVMKEKKI 466
            +LFL      ++P  +T   ++S     AG  ++A  L   +M+E+++
Sbjct: 523 EKLFL------LDPQTVTFYVLMSNIYAEAGRWEDAARL-RKLMEEREL 564


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 190/571 (33%), Positives = 319/571 (55%), Gaps = 5/571 (0%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           ++Q  +L+ Q +   G+  +     S+++AC + +  +  G ++H    + G D +  + 
Sbjct: 293 FKQACNLF-QRMEEEGVQPDKVAFVSLLRACNHPEALEQ-GKKVHARMKEVGWDTEIYVG 350

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
            +++SMY K    E A ++FD +  R+ +SW ++I  F Q+G    +   F +M   G  
Sbjct: 351 TAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIE 410

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
                   I+  CS    L+ G+QI   +I  G +     V TALL +Y+KC     A R
Sbjct: 411 PNRVTFMSILGACSSPSALKRGQQIQDHIIEAG-YGSDDRVRTALLSMYAKCGSLKDAHR 469

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VFE++  +N V+W AMI+  +  + YD  +  F+A+ +EG+KP   T T +L  C     
Sbjct: 470 VFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDS 529

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L  GK +H      G + D H+S AL+ M+  C + L  A+ +F     +D+V W++II 
Sbjct: 530 LELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGD-LMSAKNLFNDMPKRDLVSWNTIIA 588

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           G+ Q G    A   F  M+   I+P+ +T   +L++C     L+ G  +H  I +A  + 
Sbjct: 589 GFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDC 648

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           DV +G  L++MY+KCGSI  +HQ+F+++  ++  SWT++I+GY  HG G+EAL+LF +MQ
Sbjct: 649 DVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQ 708

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
           + GV+PD IT +  LSAC HAGL++E    F + MKE  I   +EHY C VDL G++G +
Sbjct: 709 QEGVKPDWITFVGALSACAHAGLIEEGLHHFQS-MKEFNIEPRMEHYGCMVDLFGRAGLL 767

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546
            +A + +  M ++P +R+  +L+ AC++H  +E+AE  A + +E +P +   + +LS + 
Sbjct: 768 NEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIY 827

Query: 547 SESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           + +G W    ++ +VM  +G+ K  G S IE
Sbjct: 828 AAAGMWKEVAKMRKVMLDRGVVKKPGQSWIE 858



 Score =  281 bits (720), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 169/527 (32%), Positives = 273/527 (51%), Gaps = 6/527 (1%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V    YE+   L++Q +  S +  +     S++ ACA A+     G +L+   LK+G D 
Sbjct: 187 VQHGLYEEAFKLHEQMVQDS-VKPDKRTFVSMLNACADARNVDK-GRELYNLILKAGWDT 244

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D  +  +LI+M+ K      A ++FD +P RD ++W S+I    ++G + ++  +F+ M 
Sbjct: 245 DLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRME 304

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
             G          ++  C+    LE G+++HA +   G ++  ++V TA+L +Y+KC   
Sbjct: 305 EEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVG-WDTEIYVGTAILSMYTKCGSM 363

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             AL VF+ +  RN VSWTAMI+G       D     F  M   G++P RVT   +L AC
Sbjct: 364 EDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGAC 423

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           +    L+ G+ I  +    G+  D  +  AL+ MY +C  +L  A  +FE+   ++VV W
Sbjct: 424 SSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCG-SLKDAHRVFEKISKQNVVAW 482

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           +++I  Y Q      A+  F  +  E I+PNS T  +IL+ C     L  G  VH  IMK
Sbjct: 483 NAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMK 542

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
           AGL  D+ + NAL++M+  CG + S+  +FN+M  RD VSW T+I+G+  HG  + A   
Sbjct: 543 AGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDY 602

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
           F  MQESG++PD IT   +L+AC     + E   L + ++ E      +      + +  
Sbjct: 603 FKMMQESGIKPDKITFTGLLNACASPEALTEGRRL-HALITEAAFDCDVLVGTGLISMYT 661

Query: 482 KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
           K G IEDA +V   +P K +    +S+++    HGR + A  L +Q+
Sbjct: 662 KCGSIEDAHQVFHKLP-KKNVYSWTSMIAGYAQHGRGKEALELFYQM 707



 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 134/466 (28%), Positives = 254/466 (54%), Gaps = 4/466 (0%)

Query: 56  KSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLE 115
           KSG   D  + N+LI+MYAK     SA Q+FD+M  +D  SWN ++  + Q+G Y  + +
Sbjct: 138 KSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFK 197

Query: 116 MFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLY 175
           +  +M              +++ C+    ++ GR+++ L++  G ++  +FV TAL++++
Sbjct: 198 LHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAG-WDTDLFVGTALINMH 256

Query: 176 SKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLT 235
            KC     A +VF+ +  R+ V+WT+MI+G      +    +LF+ M+ EGV+P +V   
Sbjct: 257 IKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFV 316

Query: 236 IVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV 295
            +L AC     L  GK +H      G+D + ++  A++ MY +C  ++  A  +F+  K 
Sbjct: 317 SLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCG-SMEDALEVFDLVKG 375

Query: 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV 355
           ++VV W+++I G++Q G + EA   F++M    IEPN VT ++IL +C+  S L  G  +
Sbjct: 376 RNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQI 435

Query: 356 HCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYG 415
             +I++AG   D  +  AL++MY+KCGS+  +H++F +++ ++ V+W  +I+ Y  H   
Sbjct: 436 QDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQY 495

Query: 416 EEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC 475
           + AL  F  + + G++P++ T  +IL+ C  +  ++  + +   +MK   +   +     
Sbjct: 496 DNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMK-AGLESDLHVSNA 554

Query: 476 YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA 521
            V +    G +  A  + + MP K      +++++    HG+ +VA
Sbjct: 555 LVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTIIAGFVQHGKNQVA 599



 Score =  214 bits (546), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 118/473 (24%), Positives = 251/473 (53%), Gaps = 20/473 (4%)

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQI 151
           +DT   N+++N  ++ G +  ++++   +      +  +  + ++ LC +   L  G +I
Sbjct: 73  KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERI 132

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQN 211
           +  +   G  +  +F+   L+++Y+KC + + A ++F+ M  ++  SW  ++ G +    
Sbjct: 133 YNHIKKSG-VQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGL 191

Query: 212 YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAA 271
           Y+    L   M ++ VKP + T   +L ACA+ R++  G+ ++      G+D D  +  A
Sbjct: 192 YEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTA 251

Query: 272 LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP 331
           L++M+ +C + +  A  +F+    +D+V W+S+I G ++ G   +A  LF RM  E ++P
Sbjct: 252 LINMHIKCGD-IGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQP 310

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIF 391
           + V  +++L +C     L  G  VH  + + G + ++ +G A+++MY+KCGS+  + ++F
Sbjct: 311 DKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVF 370

Query: 392 NEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVK 451
           + +  R+ VSWT +I+G+  HG  +EA   F +M ESG+EP+ +T ++IL AC+    +K
Sbjct: 371 DLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALK 430

Query: 452 EAETLFNNVMK-----EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILS 506
             + + +++++     + ++  A+      + +  K G ++DA +V   +  K +    +
Sbjct: 431 RGQQIQDHIIEAGYGSDDRVRTAL------LSMYAKCGSLKDAHRVFEKIS-KQNVVAWN 483

Query: 507 SLVSACRIHGRLEVAEMLAHQLI-EAEPENAANYTLLSMVCSES-----GNWL 553
           ++++A   H + + A      L+ E    N++ +T +  VC  S     G W+
Sbjct: 484 AMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWV 536



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 132/257 (51%), Gaps = 18/257 (7%)

Query: 295 VKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG 354
           +KD    ++++   S++G  +EAM++  R+    I+    T  A+L  C +   L  G  
Sbjct: 72  IKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGER 131

Query: 355 VHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGY 414
           ++ +I K+G+  D+ + N L+NMY+KCG+  S+ QIF++M  +D  SW  L+ GY  HG 
Sbjct: 132 IYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGL 191

Query: 415 GEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK-------KIA 467
            EEA +L  +M +  V+PD  T +++L+AC  A  V +   L+N ++K           A
Sbjct: 192 YEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTA 251

Query: 468 LAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQ 527
           L   H  C        G I DA KV   +P +      +S+++    HGR + A  L  +
Sbjct: 252 LINMHIKC--------GDIGDATKVFDNLPTRDLV-TWTSMITGLARHGRFKQACNLFQR 302

Query: 528 LIE--AEPENAANYTLL 542
           + E   +P+  A  +LL
Sbjct: 303 MEEEGVQPDKVAFVSLL 319


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  355 bits (910), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 190/571 (33%), Positives = 319/571 (55%), Gaps = 5/571 (0%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           ++Q  +L+ Q +   G+  +     S+++AC + +  +  G ++H    + G D +  + 
Sbjct: 293 FKQACNLF-QRMEEEGVQPDKVAFVSLLRACNHPEALEQ-GKKVHARMKEVGWDTEIYVG 350

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
            +++SMY K    E A ++FD +  R+ +SW ++I  F Q+G    +   F +M   G  
Sbjct: 351 TAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIE 410

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
                   I+  CS    L+ G+QI   +I  G +     V TALL +Y+KC     A R
Sbjct: 411 PNRVTFMSILGACSSPSALKRGQQIQDHIIEAG-YGSDDRVRTALLSMYAKCGSLKDAHR 469

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VFE++  +N V+W AMI+  +  + YD  +  F+A+ +EG+KP   T T +L  C     
Sbjct: 470 VFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDS 529

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L  GK +H      G + D H+S AL+ M+  C + L  A+ +F     +D+V W++II 
Sbjct: 530 LELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGD-LMSAKNLFNDMPKRDLVSWNTIIA 588

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           G+ Q G    A   F  M+   I+P+ +T   +L++C     L+ G  +H  I +A  + 
Sbjct: 589 GFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDC 648

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           DV +G  L++MY+KCGSI  +HQ+F+++  ++  SWT++I+GY  HG G+EAL+LF +MQ
Sbjct: 649 DVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQ 708

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
           + GV+PD IT +  LSAC HAGL++E    F + MKE  I   +EHY C VDL G++G +
Sbjct: 709 QEGVKPDWITFVGALSACAHAGLIEEGLHHFQS-MKEFNIEPRMEHYGCMVDLFGRAGLL 767

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546
            +A + +  M ++P +R+  +L+ AC++H  +E+AE  A + +E +P +   + +LS + 
Sbjct: 768 NEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIY 827

Query: 547 SESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           + +G W    ++ +VM  +G+ K  G S IE
Sbjct: 828 AAAGMWKEVAKMRKVMLDRGVVKKPGQSWIE 858



 Score =  281 bits (720), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 169/527 (32%), Positives = 273/527 (51%), Gaps = 6/527 (1%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V    YE+   L++Q +  S +  +     S++ ACA A+     G +L+   LK+G D 
Sbjct: 187 VQHGLYEEAFKLHEQMVQDS-VKPDKRTFVSMLNACADARNVDK-GRELYNLILKAGWDT 244

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D  +  +LI+M+ K      A ++FD +P RD ++W S+I    ++G + ++  +F+ M 
Sbjct: 245 DLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRME 304

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
             G          ++  C+    LE G+++HA +   G ++  ++V TA+L +Y+KC   
Sbjct: 305 EEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVG-WDTEIYVGTAILSMYTKCGSM 363

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             AL VF+ +  RN VSWTAMI+G       D     F  M   G++P RVT   +L AC
Sbjct: 364 EDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGAC 423

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           +    L+ G+ I  +    G+  D  +  AL+ MY +C  +L  A  +FE+   ++VV W
Sbjct: 424 SSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCG-SLKDAHRVFEKISKQNVVAW 482

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           +++I  Y Q      A+  F  +  E I+PNS T  +IL+ C     L  G  VH  IMK
Sbjct: 483 NAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMK 542

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
           AGL  D+ + NAL++M+  CG + S+  +FN+M  RD VSW T+I+G+  HG  + A   
Sbjct: 543 AGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDY 602

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
           F  MQESG++PD IT   +L+AC     + E   L + ++ E      +      + +  
Sbjct: 603 FKMMQESGIKPDKITFTGLLNACASPEALTEGRRL-HALITEAAFDCDVLVGTGLISMYT 661

Query: 482 KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
           K G IEDA +V   +P K +    +S+++    HGR + A  L +Q+
Sbjct: 662 KCGSIEDAHQVFHKLP-KKNVYSWTSMITGYAQHGRGKEALELFYQM 707



 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 134/466 (28%), Positives = 254/466 (54%), Gaps = 4/466 (0%)

Query: 56  KSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLE 115
           KSG   D  + N+LI+MYAK     SA Q+FD+M  +D  SWN ++  + Q+G Y  + +
Sbjct: 138 KSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFK 197

Query: 116 MFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLY 175
           +  +M              +++ C+    ++ GR+++ L++  G ++  +FV TAL++++
Sbjct: 198 LHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAG-WDTDLFVGTALINMH 256

Query: 176 SKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLT 235
            KC     A +VF+ +  R+ V+WT+MI+G      +    +LF+ M+ EGV+P +V   
Sbjct: 257 IKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFV 316

Query: 236 IVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV 295
            +L AC     L  GK +H      G+D + ++  A++ MY +C  ++  A  +F+  K 
Sbjct: 317 SLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCG-SMEDALEVFDLVKG 375

Query: 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV 355
           ++VV W+++I G++Q G + EA   F++M    IEPN VT ++IL +C+  S L  G  +
Sbjct: 376 RNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQI 435

Query: 356 HCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYG 415
             +I++AG   D  +  AL++MY+KCGS+  +H++F +++ ++ V+W  +I+ Y  H   
Sbjct: 436 QDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQY 495

Query: 416 EEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC 475
           + AL  F  + + G++P++ T  +IL+ C  +  ++  + +   +MK   +   +     
Sbjct: 496 DNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMK-AGLESDLHVSNA 554

Query: 476 YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA 521
            V +    G +  A  + + MP K      +++++    HG+ +VA
Sbjct: 555 LVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTIIAGFVQHGKNQVA 599



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 118/473 (24%), Positives = 251/473 (53%), Gaps = 20/473 (4%)

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQI 151
           +DT   N+++N  ++ G +  ++++   +      +  +  + ++ LC +   L  G +I
Sbjct: 73  KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERI 132

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQN 211
           +  +   G  +  +F+   L+++Y+KC + + A ++F+ M  ++  SW  ++ G +    
Sbjct: 133 YNHIKKSG-VQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGL 191

Query: 212 YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAA 271
           Y+    L   M ++ VKP + T   +L ACA+ R++  G+ ++      G+D D  +  A
Sbjct: 192 YEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTA 251

Query: 272 LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP 331
           L++M+ +C + +  A  +F+    +D+V W+S+I G ++ G   +A  LF RM  E ++P
Sbjct: 252 LINMHIKCGD-IGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQP 310

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIF 391
           + V  +++L +C     L  G  VH  + + G + ++ +G A+++MY+KCGS+  + ++F
Sbjct: 311 DKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVF 370

Query: 392 NEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVK 451
           + +  R+ VSWT +I+G+  HG  +EA   F +M ESG+EP+ +T ++IL AC+    +K
Sbjct: 371 DLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALK 430

Query: 452 EAETLFNNVMK-----EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILS 506
             + + +++++     + ++  A+      + +  K G ++DA +V   +  K +    +
Sbjct: 431 RGQQIQDHIIEAGYGSDDRVRTAL------LSMYAKCGSLKDAHRVFEKIS-KQNVVAWN 483

Query: 507 SLVSACRIHGRLEVAEMLAHQLI-EAEPENAANYTLLSMVCSES-----GNWL 553
           ++++A   H + + A      L+ E    N++ +T +  VC  S     G W+
Sbjct: 484 AMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWV 536



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 132/257 (51%), Gaps = 18/257 (7%)

Query: 295 VKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG 354
           +KD    ++++   S++G  +EAM++  R+    I+    T  A+L  C +   L  G  
Sbjct: 72  IKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGER 131

Query: 355 VHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGY 414
           ++ +I K+G+  D+ + N L+NMY+KCG+  S+ QIF++M  +D  SW  L+ GY  HG 
Sbjct: 132 IYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGL 191

Query: 415 GEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK-------KIA 467
            EEA +L  +M +  V+PD  T +++L+AC  A  V +   L+N ++K           A
Sbjct: 192 YEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTA 251

Query: 468 LAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQ 527
           L   H  C        G I DA KV   +P +      +S+++    HGR + A  L  +
Sbjct: 252 LINMHIKC--------GDIGDATKVFDNLPTRDLV-TWTSMITGLARHGRFKQACNLFQR 302

Query: 528 LIE--AEPENAANYTLL 542
           + E   +P+  A  +LL
Sbjct: 303 MEEEGVQPDKVAFVSLL 319


>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
          Length = 713

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 191/569 (33%), Positives = 308/569 (54%), Gaps = 3/569 (0%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           + L L+K     SGL  +  IL    KAC    +  ++G  LH  A+K+G      + ++
Sbjct: 98  EALLLFKNMRVESGLRIDPFILSLAHKACGL-NSDVNYGELLHGYAVKTGLVNSVFVGSA 156

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           L+ MY K  K     ++F EMP R+ +SW +II    + G+   +L  F EM+       
Sbjct: 157 LLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYD 216

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
           +   A  +  C+  G L  GR+IHA  +  G F++S FV+  L  +Y+KC      L +F
Sbjct: 217 SYTFAIALKACADSGALNYGREIHAQAMKKG-FDVSSFVANTLATMYNKCGKLEYGLTLF 275

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
           E+M +R+ VSWT +I+  +     +  +  F  M+   V P   T   V+  CA L  + 
Sbjct: 276 EKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIE 335

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
            G+ +H      G      +  ++M MY +C + L  + +IF     +D+V WS+II GY
Sbjct: 336 WGEQLHALILHLGLAASLSVENSIMTMYAKCGQ-LTSSSVIFHEMTRRDIVSWSTIIAGY 394

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
            Q G +SEA +L S MR+E  +P    L ++LS+C   + L HG  +H Y++  GL    
Sbjct: 395 XQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTA 454

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
            + +AL+NMY KCGSI  + +IF+     D VSWT +I+GY  HGY  E + LF ++   
Sbjct: 455 MVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRV 514

Query: 429 GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIED 488
           G+ PD++T + +LSAC+HAGLV      FN + K+ +I+ + EHY C +DLL ++G++ D
Sbjct: 515 GLRPDSVTFIGVLSACSHAGLVDLGFHYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSD 574

Query: 489 ACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSE 548
           A  ++  MP      + S+L+ ACR+HG +E     A ++++ EP  A  +  L+ + + 
Sbjct: 575 AEHMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIYAS 634

Query: 549 SGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            G W  A ++ ++M++KG+ K  G+S I+
Sbjct: 635 KGKWREAADIRKLMKSKGVIKEPGWSWIK 663



 Score =  225 bits (573), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 140/439 (31%), Positives = 225/439 (51%), Gaps = 12/439 (2%)

Query: 59  SDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFR 118
           S  D   SN  +    K     +A ++FD+M  +D ISW ++I+ +        +L +F+
Sbjct: 45  SQTDLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFK 104

Query: 119 EMYL-CGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSK 177
            M +  G  +   +L+     C    ++  G  +H   +  G    SVFV +ALLD+Y+K
Sbjct: 105 NMRVESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVN-SVFVGSALLDMYTK 163

Query: 178 CHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIV 237
                   RVF +M +RN VSWTA+I+G + +      +  F  M R  V+    T  I 
Sbjct: 164 NGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIA 223

Query: 238 LLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKD 297
           L ACA+   L  G+ IH  A   GFD    ++  L  MY +C + L     +FE+  ++D
Sbjct: 224 LKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGK-LEYGLTLFEKMSMRD 282

Query: 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHC 357
           VV W++II    Q G    A++ F RMR   + PN  T  A++S C   + +  G  +H 
Sbjct: 283 VVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHA 342

Query: 358 YIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEE 417
            I+  GL   +S+ N++M MY+KCG +TSS  IF+EM  RD VSW+T+I+GY   G+  E
Sbjct: 343 LILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSE 402

Query: 418 ALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYA--- 474
           A +L   M+  G +P    + ++LSAC +  +++  + L   V+     ++ +EH A   
Sbjct: 403 AFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVL-----SIGLEHTAMVL 457

Query: 475 -CYVDLLGKSGKIEDACKV 492
              +++  K G IE+A ++
Sbjct: 458 SALINMYCKCGSIEEASRI 476



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/236 (34%), Positives = 125/236 (52%), Gaps = 9/236 (3%)

Query: 280 TEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE---RIEPNSVTL 336
           T  L  AR +F++   KD + W+++I GY  + D SEA+ LF  MR+E   RI+P  ++L
Sbjct: 62  TGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILSL 121

Query: 337 LAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA 396
                +C   S +++G  +H Y +K GL   V +G+AL++MY+K G I    ++F+EM  
Sbjct: 122 AH--KACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPM 179

Query: 397 RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETL 456
           R+ VSWT +I+G    GY +EAL  F EM  S VE D+ T    L AC  +G +     +
Sbjct: 180 RNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREI 239

Query: 457 FNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPS---TRILSSLV 509
               MK K   ++         +  K GK+E    +   M M+     T I+++LV
Sbjct: 240 HAQAMK-KGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLV 294



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 5/149 (3%)

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           D+   N  +    K G + ++ ++F++M+ +D +SWTTLISGY       EAL LF  M+
Sbjct: 48  DLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMR 107

Query: 427 -ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
            ESG+  D   +     AC     V   E L    +K   +  ++   +  +D+  K+GK
Sbjct: 108 VESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVN-SVFVGSALLDMYTKNGK 166

Query: 486 IEDACKVVSTMPMKPS---TRILSSLVSA 511
           I +  +V   MPM+     T I++ LV A
Sbjct: 167 IFEGRRVFHEMPMRNVVSWTAIITGLVRA 195


>gi|224103989|ref|XP_002313273.1| predicted protein [Populus trichocarpa]
 gi|222849681|gb|EEE87228.1| predicted protein [Populus trichocarpa]
          Length = 680

 Score =  354 bits (909), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 199/576 (34%), Positives = 335/576 (58%), Gaps = 7/576 (1%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           FY + +HL+ +    SG   N   + SV+  CA  +     G Q+HC  +K+G D+   +
Sbjct: 88  FYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCAGLEDGVT-GRQIHCYVVKTGLDSQVTV 146

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
            N+L+ +Y K    + + ++FDE+  R+ +SWN+II           +LEMFR M   G 
Sbjct: 147 GNALVDVYGKCGYVKDSRRVFDEISERNGVSWNAIITSLAYLERNQDALEMFRLMIDGGV 206

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
              +   + ++ +  ++   + G++IH   +  G  E  +FV+ AL+D+Y+K    L A 
Sbjct: 207 KPNSVTFSSMLPVLVELKLFDFGKEIHGFSLRFG-LESDIFVANALIDMYAKSGRSLQAS 265

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
            VF Q+  +N VSW AM++    ++     +DL R MQ +G  P  VT T VL ACA + 
Sbjct: 266 NVFNQIGEKNIVSWNAMVANFAQNRLELAAVDLVRQMQADGEIPNSVTFTNVLPACARIG 325

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
            LR GK IH  A   G   D  +S AL  MY +C   L+ AR +F +  ++D V ++ +I
Sbjct: 326 FLRPGKEIHARAIRTGSSVDLFVSNALTDMYAKCG-CLNLARRVF-KISLRDEVSYNILI 383

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
            GYSQ+ + SE+++LF  M ++ ++ + V+ + ++S+C   + L  G  VH   ++  L+
Sbjct: 384 IGYSQTTNCSESLRLFLEMGIKGMKLDVVSYMGVISACANLAALKQGKEVHGLAVRKHLH 443

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
             + I NAL++ Y KCG I  + ++F ++ +RD  SW ++I GYG  G    A+ LF  M
Sbjct: 444 THLFIANALLDFYIKCGRIDLAGKVFRQIPSRDTASWNSMILGYGMLGELTIAINLFEAM 503

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
           +E GVE D+++ +A+LSAC+H GLV+E +  F + M+ + I     HYAC VDLLG++G 
Sbjct: 504 KEDGVEYDSVSYIAVLSACSHGGLVEEGKKYFEH-MQVQNIKPTQMHYACMVDLLGRAGL 562

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV 545
           IE+A K++ ++P++P   +  +L+ ACRIHG +E+A   A  L + +P+++  Y++LS +
Sbjct: 563 IEEAVKLIESLPIEPDANVWGALLGACRIHGYIELAHWAAEHLFKLKPQHSGYYSVLSNM 622

Query: 546 CSESGNWLGAEEVWRVMRAKGLSKSYGFS--RIENE 579
            +E+G W  A +V ++M+++G  K+ G S  +I+N+
Sbjct: 623 YAEAGKWDEANQVRKLMKSRGAKKNPGCSWVQIDNQ 658



 Score =  256 bits (654), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 166/536 (30%), Positives = 282/536 (52%), Gaps = 18/536 (3%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G+  +    P V+KACA + + Q  G ++H    K G D+D  + N+L+  Y      + 
Sbjct: 2   GVRLDDHTFPFVLKACADSLSVQK-GREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKD 60

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL-CGFVLKAELLAGIISLCS 140
             ++FDEM  RD +SWNS+I  F+ +GFY  ++ +F EM L  GF      +  ++ +C+
Sbjct: 61  VKRVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCA 120

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
            + +   GRQIH  V+  G  +  V V  AL+D+Y KC +   + RVF+++  RN VSW 
Sbjct: 121 GLEDGVTGRQIHCYVVKTG-LDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWN 179

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
           A+I+     +     +++FR M   GVKP  VT + +L    EL+    GK IHG++   
Sbjct: 180 AIITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEIHGFSLRF 239

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
           G + D  ++ AL+ MY +   +L  +  +F +   K++V W++++  ++Q+     A+ L
Sbjct: 240 GLESDIFVANALIDMYAKSGRSLQASN-VFNQIGEKNIVSWNAMVANFAQNRLELAAVDL 298

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
             +M+ +   PNSVT   +L +C R  FL  G  +H   ++ G + D+ + NAL +MY+K
Sbjct: 299 VRQMQADGEIPNSVTFTNVLPACARIGFLRPGKEIHARAIRTGSSVDLFVSNALTDMYAK 358

Query: 381 CGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
           CG +  + ++F +++ RD VS+  LI GY       E+L+LFLEM   G++ D ++ + +
Sbjct: 359 CGCLNLARRVF-KISLRDEVSYNILIIGYSQTTNCSESLRLFLEMGIKGMKLDVVSYMGV 417

Query: 441 LSACNHAGLVKEAETLFN-NVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           +SAC +   +K+ + +    V K     L I +    +D   K G+I+ A KV   +P +
Sbjct: 418 ISACANLAALKQGKEVHGLAVRKHLHTHLFIAN--ALLDFYIKCGRIDLAGKVFRQIPSR 475

Query: 500 PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV-----CSESG 550
             T   +S++    + G L +    A  L EA  E+   Y  +S +     CS  G
Sbjct: 476 -DTASWNSMILGYGMLGELTI----AINLFEAMKEDGVEYDSVSYIAVLSACSHGG 526


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  354 bits (908), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 191/560 (34%), Positives = 307/560 (54%), Gaps = 3/560 (0%)

Query: 18  LHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFS 77
           +   GL  +     S++ AC+ +    ++G ++H   +++G   +  + N+LISMYAK  
Sbjct: 136 MQQEGLEPDKFTFVSILSACS-SPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCG 194

Query: 78  KPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS 137
               A ++FD M  RD +SW ++   + ++G+   SL+ +  M   G          ++S
Sbjct: 195 SVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLS 254

Query: 138 LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197
            C  +  LE G+QIHA  IV+      V VSTAL  +Y KC     A  VFE +  R+ +
Sbjct: 255 ACGSLAALEKGKQIHAQ-IVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVI 313

Query: 198 SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
           +W  MI G +DS   +    +F  M +E V P RVT   +L ACA    L  GK IH  A
Sbjct: 314 AWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARA 373

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
              G   D     AL++MY +   ++  AR +F+R   +DVV W++++ GY+  G + E+
Sbjct: 374 VKDGLVSDVRFGNALINMYSKAG-SMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVES 432

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
              F +M  + +E N +T + +L +C+    L  G  +H  ++KAG+  D+++ NALM+M
Sbjct: 433 FSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSM 492

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           Y KCGS+  + ++   M+ RD V+W TLI G   +G G EALQ F  M+   + P+A T 
Sbjct: 493 YFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTF 552

Query: 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
           + ++SAC    LV+E    F ++ K+  I    +HYAC VD+L ++G + +A  V+ TMP
Sbjct: 553 VNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMP 612

Query: 498 MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEE 557
            KPS  +  +L++ACR HG +E+ E  A Q ++ EP+NA  Y  LS + + +G W    +
Sbjct: 613 FKPSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVSLSFIYAAAGMWRDVAK 672

Query: 558 VWRVMRAKGLSKSYGFSRIE 577
           + ++M+ +G+ K  G S IE
Sbjct: 673 LRKLMKERGVKKEPGRSWIE 692



 Score =  265 bits (677), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 177/536 (33%), Positives = 265/536 (49%), Gaps = 14/536 (2%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           Q LH  G   ++     ++++C  A+     G Q+H   L+ G   +  I N+L+ +Y  
Sbjct: 33  QYLHQKGSQVDSYDYVKLLQSCVKAKDLA-VGKQVHEHILRFGMKPNVYIINTLLKLYVH 91

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
                 A +LFD+   +  +SWN +I+ +   G    +  +F  M   G          I
Sbjct: 92  CGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSI 151

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           +S CS    L  GR++H  V+  G    +  V  AL+ +Y+KC     A RVF+ M  R+
Sbjct: 152 LSACSSPAALNWGREVHVRVMEAG-LANNATVGNALISMYAKCGSVRDARRVFDAMASRD 210

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
           EVSWT +     +S      +  + AM +EGV+P+R+T   VL AC  L  L  GK IH 
Sbjct: 211 EVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHA 270

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
                    D  +S AL  MY +C  A+  AR +FE    +DV+ W+++I G   SG L 
Sbjct: 271 QIVESEHHSDVRVSTALTKMYIKCG-AVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLE 329

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           EA  +F RM  E + P+ VT LAILS+C R   L+ G  +H   +K GL  DV  GNAL+
Sbjct: 330 EAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALI 389

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           NMYSK GS+  + Q+F+ M  RD VSWT L+ GY   G   E+   F +M + GVE + I
Sbjct: 390 NMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKI 449

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIA-LAIEHYACYVDLLGKSGKIEDACKVVS 494
           T + +L AC++   +K  + +   V+K    A LA+ +    + +  K G +EDA +V  
Sbjct: 450 TYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVAN--ALMSMYFKCGSVEDAIRVSE 507

Query: 495 TMPMKPSTRIL---SSLVSACRIHGR-LEVAEMLAHQLIEAEPENAANYTLLSMVC 546
            M    STR +   ++L+     +GR LE  +       E    NA  +  +   C
Sbjct: 508 GM----STRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSAC 559



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 189/347 (54%), Gaps = 12/347 (3%)

Query: 217 DLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMY 276
           D+ + + ++G +        +L +C + +DL  GK +H +    G   + ++   L+ +Y
Sbjct: 30  DVLQYLHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLY 89

Query: 277 CECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTL 336
             C  +++ AR +F++   K VV W+ +I GY+  G   EA  LF+ M+ E +EP+  T 
Sbjct: 90  VHCG-SVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTF 148

Query: 337 LAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA 396
           ++ILS+C+  + L+ G  VH  +M+AGL  + ++GNAL++MY+KCGS+  + ++F+ MA+
Sbjct: 149 VSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMAS 208

Query: 397 RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETL 456
           RD VSWTTL   Y   GY +E+L+ +  M + GV P  IT + +LSAC     +++ + +
Sbjct: 209 RDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQI 268

Query: 457 FNNVMKEK---KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACR 513
              +++ +    + ++      Y+    K G ++DA +V   +P +      ++++    
Sbjct: 269 HAQIVESEHHSDVRVSTALTKMYI----KCGAVKDAREVFECLPNR-DVIAWNTMIGGLV 323

Query: 514 IHGRLEVAEMLAHQLIE--AEPENAANYTLLSMVCSESGNWLGAEEV 558
             G+LE A  + H++++    P+      +LS  C+  G     +E+
Sbjct: 324 DSGQLEEAHGMFHRMLKECVAPDRVTYLAILS-ACARPGGLACGKEI 369


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 191/562 (33%), Positives = 319/562 (56%), Gaps = 4/562 (0%)

Query: 18  LHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFS 77
           L  SG  ++ + L  V+K C      +  G Q+HC  +K G   D  +  SL+ MY K  
Sbjct: 83  LRRSGSPTDGSSLSCVLKVCG-CLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTE 141

Query: 78  KPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS 137
             E   ++FDEM  ++ +SW S++  + QNG   ++L++F +M L G        A ++ 
Sbjct: 142 SVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLG 201

Query: 138 LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197
             +  G +E G Q+H +VI  G  + ++FV  +++++YSK      A  VF+ M  RN V
Sbjct: 202 GLAADGAVEKGVQVHTMVIKSG-LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAV 260

Query: 198 SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
           SW +MI+G + +       +LF  M+ EGVK T+     V+  CA ++++   K +H   
Sbjct: 261 SWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQV 320

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
              G DFD ++  ALM  Y +C+E     ++      V++VV W++II GY Q+G    A
Sbjct: 321 IKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRA 380

Query: 318 MKLFSRMRLER-IEPNSVTLLAILSSCTRQSF-LSHGLGVHCYIMKAGLNFDVSIGNALM 375
           M LF +MR E  +EPN  T  ++L++C   +  +  G   H   +K+G +  + + +AL+
Sbjct: 381 MNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALV 440

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
            MY+K G+I S++++F     RD VSW ++ISGY  HG G+++L++F EM+   +E D I
Sbjct: 441 TMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGI 500

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           T + ++SAC HAGLV E +  F+ ++K+  I   +EHY+C VDL  ++G +E A  +++ 
Sbjct: 501 TFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINK 560

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGA 555
           MP      I  +L++ACR+H  +++ E+ A +LI  +P+++A Y LLS + + +GNW   
Sbjct: 561 MPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQER 620

Query: 556 EEVWRVMRAKGLSKSYGFSRIE 577
            +V ++M  K + K  G+S IE
Sbjct: 621 AKVRKLMDMKKVKKEAGYSWIE 642



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 123/411 (29%), Positives = 210/411 (51%), Gaps = 4/411 (0%)

Query: 84  QLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIG 143
           QLFDE P +     N ++  F++N     +L +F  +   G       L+ ++ +C  + 
Sbjct: 47  QLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLF 106

Query: 144 ELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMI 203
           +  +G+Q+H   I  G  E  V V T+L+D+Y K        RVF++M ++N VSWT+++
Sbjct: 107 DRIVGKQVHCQCIKCGFVE-DVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLL 165

Query: 204 SGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFD 263
           +G   +   +  + LF  MQ EG+KP   T   VL   A    +  G  +H      G D
Sbjct: 166 AGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLD 225

Query: 264 FDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSR 323
               +  ++++MY + +  +  A+ +F+  + ++ V W+S+I G+  +G   EA +LF R
Sbjct: 226 STIFVGNSMVNMYSK-SLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYR 284

Query: 324 MRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS 383
           MRLE ++        ++  C     +S    +HC ++K G +FD++I  ALM  YSKC  
Sbjct: 285 MRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSE 344

Query: 384 ITSSHQIFNEM-AARDFVSWTTLISGYGFHGYGEEALQLFLEM-QESGVEPDAITVLAIL 441
           I  + ++F  M   ++ VSWT +ISGY  +G  + A+ LF +M +E GVEP+  T  ++L
Sbjct: 345 IDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVL 404

Query: 442 SACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKV 492
           +AC       E    F++   +   + A+   +  V +  K G IE A +V
Sbjct: 405 NACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEV 455



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 177/345 (51%), Gaps = 17/345 (4%)

Query: 208 DSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
           + QN +  ++LF  ++R G      +L+ VL  C  L D   GK +H     CGF  D  
Sbjct: 70  NDQNKE-ALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFDRIVGKQVHCQCIKCGFVEDVS 128

Query: 268 LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
           +  +L+ MY + TE++     +F+  +VK+VV W+S++ GY Q+G   +A+KLFS+M+LE
Sbjct: 129 VGTSLVDMYMK-TESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLE 187

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
            I+PN  T  A+L        +  G+ VH  ++K+GL+  + +GN+++NMYSK   ++ +
Sbjct: 188 GIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDA 247

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHA 447
             +F+ M  R+ VSW ++I+G+  +G   EA +LF  M+  GV+        ++  C + 
Sbjct: 248 KAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANI 307

Query: 448 GLVKEAETLFNNVMKEK-------KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKP 500
             +  A+ L   V+K         K AL + +  C         +I+DA K+   M    
Sbjct: 308 KEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKC--------SEIDDAFKLFCMMHGVQ 359

Query: 501 STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV 545
           +    ++++S    +GR + A  L  Q+   E      +T  S++
Sbjct: 360 NVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVL 404



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 100/200 (50%), Gaps = 1/200 (0%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           ++ ++L+ Q     G+  N     SV+ ACA        G Q H  ++KSG      +S+
Sbjct: 378 DRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSS 437

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +L++MYAK    ESA ++F     RD +SWNS+I+ + Q+G   +SL++F EM      L
Sbjct: 438 ALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLEL 497

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
                 G+IS C+  G +  G++   L++ D     ++   + ++DLYS+      A+ +
Sbjct: 498 DGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDL 557

Query: 188 FEQMVIRNEVS-WTAMISGC 206
             +M      + W  +++ C
Sbjct: 558 INKMPFPAGATIWRTLLAAC 577


>gi|297742828|emb|CBI35582.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 196/568 (34%), Positives = 331/568 (58%), Gaps = 7/568 (1%)

Query: 11  LHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLI 70
           L +Y Q +   G+  +    P V+KACA A   +  G ++H + +K G ++D  + N+L+
Sbjct: 26  LEVYNQMVR-IGVRPDDHTFPFVLKACADAFEVRK-GREVHGSVVKLGFESDVFVGNTLL 83

Query: 71  SMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVR-SLEMFREMYLCGFVLKA 129
           S Y        A ++FDEMP +D +SWN++I  F+ NG++ R +L+MFR M   G    +
Sbjct: 84  SFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNGWHYRDALDMFRLMIDEGLKPNS 143

Query: 130 ELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
             ++  + +  ++   + GR++H   I  G  E  +F++ +L+D+Y+K  H   A  VF 
Sbjct: 144 ITISSFLPVLVELEFFKAGREVHGSSIRMG-LESDIFIANSLIDMYAKSGHSTEASNVFY 202

Query: 190 QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
           ++  +N VSW AMI+    ++     + L R MQ  G  P  VT T VL ACA +  +R 
Sbjct: 203 KLDAKNVVSWNAMIANFAQNRFELVAVGLVRQMQDYGELPNSVTFTNVLPACARMGLVRP 262

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
           GK IH  +   G  FD  +S AL  MY +    L  AR +F+ T ++D V ++ +I G+S
Sbjct: 263 GKEIHARSIHMGCAFDLFVSNALTDMYAKSGH-LKLARNVFD-TSLRDEVSYNILIVGHS 320

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
           Q+ D SE++ LFS M+L  ++ ++V+ +  LS+C   + +  G  +H ++++   +  + 
Sbjct: 321 QTSDCSESLSLFSEMQLMGLKQDNVSFMGALSACANLTAIKQGKEIHGFLLRKLFHIHLF 380

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
           + N+L++ Y+KCG I  +  IF+ M  +D  SW T+I GYG  G  + A+ LF  M++  
Sbjct: 381 VANSLLDFYTKCGRIGLARNIFDRMTNKDVASWNTMILGYGMLGELDTAIDLFENMRKDD 440

Query: 430 VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
           VE D+++ +A+LSAC+H GL+++    F+  +K + I     HYAC VDLLG++G +E+A
Sbjct: 441 VEYDSVSFIAVLSACSHGGLLEKGRKYFDE-LKARGIEPTQMHYACMVDLLGRAGLMEEA 499

Query: 490 CKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSES 549
            +++  +P+ P   I  +L+ ACRI+G LE+A   A  L E +PE++  YTLLS + +E+
Sbjct: 500 AELIKGLPIVPDANIWGALLGACRIYGNLELAAWAAEHLFELKPEHSGYYTLLSNMYAET 559

Query: 550 GNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           G W  A  +  +M+++G+ KS G S ++
Sbjct: 560 GRWDEANRIRELMKSRGVKKSPGCSWVQ 587



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 149/307 (48%), Gaps = 22/307 (7%)

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258
           W  +I G         G++++  M R GV+P   T   VL ACA+  ++R G+ +HG   
Sbjct: 10  WNTLIRG-YSIAGVGGGLEVYNQMVRIGVRPDDHTFPFVLKACADAFEVRKGREVHGSVV 68

Query: 259 CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSG-DLSEA 317
             GF+ D  +   L+  Y  C   L  A  +F+    KD+V W+++I  +S +G    +A
Sbjct: 69  KLGFESDVFVGNTLLSFYGNCG-GLRDAGRVFDEMPEKDLVSWNTMIGVFSVNGWHYRDA 127

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
           + +F  M  E ++PNS+T+ + L       F   G  VH   ++ GL  D+ I N+L++M
Sbjct: 128 LDMFRLMIDEGLKPNSITISSFLPVLVELEFFKAGREVHGSSIRMGLESDIFIANSLIDM 187

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           Y+K G  T +  +F ++ A++ VSW  +I+ +  + +   A+ L  +MQ+ G  P+++T 
Sbjct: 188 YAKSGHSTEASNVFYKLDAKNVVSWNAMIANFAQNRFELVAVGLVRQMQDYGELPNSVTF 247

Query: 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLL---------GKSGKIED 488
             +L AC   GLV+            K+I     H  C  DL           KSG ++ 
Sbjct: 248 TNVLPACARMGLVRPG----------KEIHARSIHMGCAFDLFVSNALTDMYAKSGHLKL 297

Query: 489 ACKVVST 495
           A  V  T
Sbjct: 298 ARNVFDT 304



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 126/257 (49%), Gaps = 13/257 (5%)

Query: 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
           +W+++IRGYS +G +   ++++++M    + P+  T   +L +C     +  G  VH  +
Sbjct: 9   LWNTLIRGYSIAG-VGGGLEVYNQMVRIGVRPDDHTFPFVLKACADAFEVRKGREVHGSV 67

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYG-EEA 418
           +K G   DV +GN L++ Y  CG +  + ++F+EM  +D VSW T+I  +  +G+   +A
Sbjct: 68  VKLGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNGWHYRDA 127

Query: 419 LQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK---EKKIALAIEHYAC 475
           L +F  M + G++P++IT+ + L         K    +  + ++   E  I +A      
Sbjct: 128 LDMFRLMIDEGLKPNSITISSFLPVLVELEFFKAGREVHGSSIRMGLESDIFIA----NS 183

Query: 476 YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLE-VAEMLAHQLIE-AEP 533
            +D+  KSG   +A  V   +  K    +  + + A     R E VA  L  Q+ +  E 
Sbjct: 184 LIDMYAKSGHSTEASNVFYKLDAK--NVVSWNAMIANFAQNRFELVAVGLVRQMQDYGEL 241

Query: 534 ENAANYTLLSMVCSESG 550
            N+  +T +   C+  G
Sbjct: 242 PNSVTFTNVLPACARMG 258


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 197/564 (34%), Positives = 329/564 (58%), Gaps = 9/564 (1%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGS-DADPVISNSLISMYAKFSKP- 79
           G Y N      V +AC+  + +   G  +    LK+G  ++D  +  +LI M+ K +   
Sbjct: 37  GFYPNEYCFTGVFRACSNKE-NISLGKIIFGFLLKTGYFESDVCVGCALIDMFVKGNGDL 95

Query: 80  ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLC 139
           ESAY++FD MP R+ ++W  +I  F Q GF   ++++F +M L G+V     L+G++S C
Sbjct: 96  ESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSAC 155

Query: 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKC---HHWLIALRVFEQMVIRNE 196
           +++G L LGRQ H LV+  G  +L V V  +L+D+Y+KC        A +VF++M + N 
Sbjct: 156 AEMGLLSLGRQFHCLVMKSG-LDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNV 214

Query: 197 VSWTAMISGCIDSQNYD-TGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
           +SWTA+I+G + S   D   I+LF  M +  VKP   T + VL ACA L D+  G+ ++ 
Sbjct: 215 MSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYA 274

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
                     + +  +L+ MY  C   +  AR  F+    K++V +++I+  Y++S +  
Sbjct: 275 LVVKMRLASINCVGNSLISMYSRCGN-MENARKAFDVLFEKNLVSYNTIVNAYAKSLNSE 333

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           EA +LF+ +       N+ T  ++LS  +    +  G  +H  I+K+G   ++ I NAL+
Sbjct: 334 EAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALI 393

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           +MYS+CG+I ++ Q+FNEM   + +SWT++I+G+  HG+   AL+ F +M E+GV P+ +
Sbjct: 394 SMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEV 453

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           T +A+LSAC+H GL+ E    F ++  E  I   +EHYAC VDLLG+SG +E+A ++V++
Sbjct: 454 TYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNS 513

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGA 555
           MP K    +L + + ACR+HG +++ +  A  ++E +P + A Y LLS + + +G W   
Sbjct: 514 MPFKADALVLRTFLGACRVHGNMDLGKHAAEMILEQDPHDPAAYILLSNLHASAGQWEEV 573

Query: 556 EEVWRVMRAKGLSKSYGFSRIENE 579
            E+ + M+ + L+K  G S IE E
Sbjct: 574 AEIRKKMKERNLTKEAGCSWIEVE 597



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 140/465 (30%), Positives = 239/465 (51%), Gaps = 9/465 (1%)

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQI 151
           RD +SW+++I+C+  N     ++  F +M  CGF        G+   CS    + LG+ I
Sbjct: 5   RDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKII 64

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKCHHWL-IALRVFEQMVIRNEVSWTAMISGCIDSQ 210
              ++  G FE  V V  AL+D++ K +  L  A +VF++M  RN V+WT MI+      
Sbjct: 65  FGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLG 124

Query: 211 NYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSA 270
                +DLF  M   G  P R TL+ V+ ACAE+  L  G+  H      G D D  +  
Sbjct: 125 FSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGC 184

Query: 271 ALMHMYCECTE--ALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS-EAMKLFSRMRLE 327
           +L+ MY +C    ++  AR +F+R  V +V+ W++II GY QSG    EA++LF  M   
Sbjct: 185 SLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQG 244

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
           +++PN  T  ++L +C   S +  G  V+  ++K  L     +GN+L++MYS+CG++ ++
Sbjct: 245 QVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENA 304

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHA 447
            + F+ +  ++ VS+ T+++ Y      EEA +LF E++ +G   +A T  ++LS  +  
Sbjct: 305 RKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSI 364

Query: 448 GLVKEAETLFNNVMKEK-KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILS 506
           G + + E + + ++K   K  L I +    + +  + G IE A +V + M    +    +
Sbjct: 365 GAIGKGEQIHSRILKSGFKSNLHICN--ALISMYSRCGNIEAAFQVFNEMG-DGNVISWT 421

Query: 507 SLVSACRIHGRLEVAEMLAHQLIEAE-PENAANYTLLSMVCSESG 550
           S+++    HG    A    H+++EA    N   Y  +   CS  G
Sbjct: 422 SMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVG 466


>gi|356501823|ref|XP_003519723.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 727

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 192/577 (33%), Positives = 327/577 (56%), Gaps = 5/577 (0%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           +V+   + + +H Y   L   G+  +    P V+KAC+     Q  G  +H T +   + 
Sbjct: 108 LVAVGHFTKAIHFYHSMLQ-HGVTPDNYTYPLVLKACSSLHALQ-LGRWVHET-MHGKTK 164

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
           A+  +  ++I M+AK    E A ++F+EMP RD  SW ++I     NG  + +L +FR+M
Sbjct: 165 ANVYVQCAVIDMFAKCGSVEDARRMFEEMPDRDLASWTALICGTMWNGECLEALLLFRKM 224

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
              G +  + ++A I+  C ++  ++LG  +    +  G FE  ++VS A++D+Y KC  
Sbjct: 225 RSEGLMPDSVIVASILPACGRLEAVKLGMALQVCAVRSG-FESDLYVSNAVIDMYCKCGD 283

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
            L A RVF  MV  + VSW+ +I+G   +  Y     L+  M   G+    +  T VL A
Sbjct: 284 PLEAHRVFSHMVYSDVVSWSTLIAGYSQNCLYQESYKLYIGMINVGLATNAIVATSVLPA 343

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
             +L  L+ GK +H +    G   D  + +AL+ MY  C  ++  A  IFE T  KD+++
Sbjct: 344 LGKLELLKQGKEMHNFVLKEGLMSDVVVGSALIVMYANCG-SIKEAESIFECTSDKDIMV 402

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           W+S+I GY+  GD   A   F R+      PN +T+++IL  CT+   L  G  +H Y+ 
Sbjct: 403 WNSMIVGYNLVGDFESAFFTFRRIWGAEHRPNFITVVSILPICTQMGALRQGKEIHGYVT 462

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
           K+GL  +VS+GN+L++MYSKCG +    ++F +M  R+  ++ T+IS  G HG GE+ L 
Sbjct: 463 KSGLGLNVSVGNSLIDMYSKCGFLELGEKVFKQMMVRNVTTYNTMISACGSHGQGEKGLA 522

Query: 421 LFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLL 480
            + +M+E G  P+ +T +++LSAC+HAGL+     L+N+++ +  I   +EHY+C VDL+
Sbjct: 523 FYEQMKEEGNRPNKVTFISLLSACSHAGLLDRGWLLYNSMINDYGIEPNMEHYSCMVDLI 582

Query: 481 GKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYT 540
           G++G ++ A K ++ MPM P   +  SL+ ACR+H ++E+ E+LA ++++ + +++ +Y 
Sbjct: 583 GRAGDLDGAYKFITRMPMTPDANVFGSLLGACRLHNKVELTELLAERILQLKADDSGHYV 642

Query: 541 LLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           LLS + +    W    +V  +++ KGL K  G S I+
Sbjct: 643 LLSNLYASGKRWEDMSKVRSMIKDKGLEKKPGSSWIQ 679



 Score =  232 bits (591), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 146/494 (29%), Positives = 251/494 (50%), Gaps = 12/494 (2%)

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
           ++ L+++Y  F   + A+  F  +P++  I+WN+I+      G + +++  +  M   G 
Sbjct: 70  ASQLVNVYVNFGSLQHAFLTFRALPHKPIIAWNAILRGLVAVGHFTKAIHFYHSMLQHGV 129

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
                    ++  CS +  L+LGR +H    + G  + +V+V  A++D+++KC     A 
Sbjct: 130 TPDNYTYPLVLKACSSLHALQLGRWVHE--TMHGKTKANVYVQCAVIDMFAKCGSVEDAR 187

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
           R+FE+M  R+  SWTA+I G + +      + LFR M+ EG+ P  V +  +L AC  L 
Sbjct: 188 RMFEEMPDRDLASWTALICGTMWNGECLEALLLFRKMRSEGLMPDSVIVASILPACGRLE 247

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
            ++ G A+   A   GF+ D ++S A++ MYC+C + L   R +F      DVV WS++I
Sbjct: 248 AVKLGMALQVCAVRSGFESDLYVSNAVIDMYCKCGDPLEAHR-VFSHMVYSDVVSWSTLI 306

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
            GYSQ+    E+ KL+  M    +  N++   ++L +  +   L  G  +H +++K GL 
Sbjct: 307 AGYSQNCLYQESYKLYIGMINVGLATNAIVATSVLPALGKLELLKQGKEMHNFVLKEGLM 366

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            DV +G+AL+ MY+ CGSI  +  IF   + +D + W ++I GY   G  E A   F  +
Sbjct: 367 SDVVVGSALIVMYANCGSIKEAESIFECTSDKDIMVWNSMIVGYNLVGDFESAFFTFRRI 426

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
             +   P+ ITV++IL  C   G +++ + +   V K   + L +      +D+  K G 
Sbjct: 427 WGAEHRPNFITVVSILPICTQMGALRQGKEIHGYVTKS-GLGLNVSVGNSLIDMYSKCGF 485

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLS 543
           +E   KV   M ++  T   ++++SAC  HG+ E       Q+ E    P      +LLS
Sbjct: 486 LELGEKVFKQMMVRNVT-TYNTMISACGSHGQGEKGLAFYEQMKEEGNRPNKVTFISLLS 544

Query: 544 MVCSESG----NWL 553
             CS +G     WL
Sbjct: 545 -ACSHAGLLDRGWL 557



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/129 (22%), Positives = 60/129 (46%), Gaps = 2/129 (1%)

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
           S  + L+N+Y   GS+  +   F  +  +  ++W  ++ G    G+  +A+  +  M + 
Sbjct: 68  SFASQLVNVYVNFGSLQHAFLTFRALPHKPIIAWNAILRGLVAVGHFTKAIHFYHSMLQH 127

Query: 429 GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIED 488
           GV PD  T   +L AC+    ++    +   +  + K  + ++     +D+  K G +ED
Sbjct: 128 GVTPDNYTYPLVLKACSSLHALQLGRWVHETMHGKTKANVYVQ--CAVIDMFAKCGSVED 185

Query: 489 ACKVVSTMP 497
           A ++   MP
Sbjct: 186 ARRMFEEMP 194


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 184/560 (32%), Positives = 321/560 (57%), Gaps = 5/560 (0%)

Query: 18  LHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFS 77
           L  + +YS+  +   +++ CA  ++ +  G ++H   LKSG   +  + N+L+SMYAK  
Sbjct: 89  LQGTRVYSD--VFRGLLQECARLRSLEQ-GREVHAAILKSGIQPNRYLENTLLSMYAKCG 145

Query: 78  KPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS 137
               A ++FD +  R+ +SW ++I  F      + + + +  M L G          +++
Sbjct: 146 SLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLN 205

Query: 138 LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197
             +    L++G+++H + I     EL   V T+L+ +Y+KC     A  +F+++  +N V
Sbjct: 206 AFTNPELLQVGQKVH-MEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVV 264

Query: 198 SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
           +WT +I+G       D  ++L   MQ+  V P ++T T +L  C     L +GK +H Y 
Sbjct: 265 TWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYI 324

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
              G+  +  +  AL+ MYC+C   L  AR +F     +DVV W++++ GY+Q G   EA
Sbjct: 325 IQSGYGREIWVVNALITMYCKCG-GLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEA 383

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
           + LF RM+ + I+P+ +T  + L+SC+  +FL  G  +H  ++ AG + DV + +AL++M
Sbjct: 384 IDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSM 443

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           Y+KCGS+  +  +FN+M+ R+ V+WT +I+G   HG   EAL+ F +M++ G++PD +T 
Sbjct: 444 YAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTF 503

Query: 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
            ++LSAC H GLV+E    F ++  +  I   +EHY+C+VDLLG++G +E+A  V+ TMP
Sbjct: 504 TSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMP 563

Query: 498 MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEE 557
            +P   +  +L+SACRIH  +E  E  A  +++ +P++   Y  LS + + +G +  AE+
Sbjct: 564 FQPGPSVWGALLSACRIHSDVERGERAAENVLKLDPDDDGAYVALSNIYAAAGRYEDAEK 623

Query: 558 VWRVMRAKGLSKSYGFSRIE 577
           V +VM  + + K  G S IE
Sbjct: 624 VRQVMEKRDVVKEPGQSWIE 643



 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 140/498 (28%), Positives = 266/498 (53%), Gaps = 24/498 (4%)

Query: 70  ISMYAKF-SKPESAYQL------FDEMP----YR--DTISWNSIINCFTQNGFYVRSLEM 116
           I M+ ++ S  ++A++L       D++P    +R  DT++ +  ++   + G    +L +
Sbjct: 24  ILMFNRYQSNVDTAFELTTPTVSHDQLPGNAGFRKVDTLANSGDVSILCKQGRLKEALGI 83

Query: 117 FREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYS 176
              M L G  + +++  G++  C+++  LE GR++HA ++  G  + + ++   LL +Y+
Sbjct: 84  LNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSG-IQPNRYLENTLLSMYA 142

Query: 177 KCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTI 236
           KC     A RVF+ +  RN VSWTAMI   +           +  M+  G KP +VT   
Sbjct: 143 KCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVS 202

Query: 237 VLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK 296
           +L A      L+ G+ +H      G + +  +  +L+ MY +C + +  A++IF++   K
Sbjct: 203 LLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGD-ISKAQVIFDKLPEK 261

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVH 356
           +VV W+ +I GY+Q G +  A++L  +M+   + PN +T  +IL  CT    L HG  VH
Sbjct: 262 NVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVH 321

Query: 357 CYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGE 416
            YI+++G   ++ + NAL+ MY KCG +  + ++F ++  RD V+WT +++GY   G+ +
Sbjct: 322 RYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHD 381

Query: 417 EALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACY 476
           EA+ LF  MQ+ G++PD +T  + L++C+    ++E +++   ++     +L +   +  
Sbjct: 382 EAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLV-HAGYSLDVYLQSAL 440

Query: 477 VDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGR----LEVAEMLAHQLIEAE 532
           V +  K G ++DA  V + M  + +    +++++ C  HGR    LE  E +  Q I  +
Sbjct: 441 VSMYAKCGSMDDARLVFNQMSER-NVVAWTAMITGCAQHGRCREALEYFEQMKKQGI--K 497

Query: 533 PENAANYTLLSMVCSESG 550
           P+     ++LS  C+  G
Sbjct: 498 PDKVTFTSVLS-ACTHVG 514


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 199/592 (33%), Positives = 328/592 (55%), Gaps = 65/592 (10%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           +LHC  +KS ++ +  + N+LI+ Y+K      A  +FD+MP  ++ SWN++++ ++++G
Sbjct: 26  KLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSWNTMLSAYSKSG 85

Query: 109 FYVRSLEMFREM--------------YLC-GFVLKA------ELLAGIIS---------- 137
                 E+F  M              Y+C G V++A       +  G+++          
Sbjct: 86  DLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTML 145

Query: 138 -LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQ------ 190
            L S  G ++LGRQIH  ++  G F   VFV ++L+D+Y+K     +A +VF++      
Sbjct: 146 LLVSSQGCVDLGRQIHGQIVKFG-FGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNV 204

Query: 191 -------------------------MVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
                                    M  R+ +SWT MI+G I +      +DLFR M++E
Sbjct: 205 VMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQE 264

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
           G+   + T   VL AC  LR L+ GK IH      G++ +  + +AL+ MYC+C  ++  
Sbjct: 265 GMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKC-RSVRY 323

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           A  +F+R   K+VV W++++ GY Q+G   EA+++F  M+   IEP+  TL +++SSC  
Sbjct: 324 AEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCAN 383

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
            + L  G   HC  + +GL   +++ NAL+ +Y KCGSI  S+Q+F+EM+ RD VSWT L
Sbjct: 384 LASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTAL 443

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           +SGY   G   E + LF  M   G++PDA+T +A+LSAC+ AGLV+  +  F +++K+  
Sbjct: 444 VSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHG 503

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
           I    +HY C +DL G++G++E+A   ++ MP  P +   ++L+S+CR++G  E+ +  A
Sbjct: 504 IIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSSCRLYGNEEIGKWAA 563

Query: 526 HQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
             L+E +P+N A Y LLS + +  G W    ++ R MR KG  K  GFS I+
Sbjct: 564 ESLLELDPQNPAGYILLSSIYAAKGKWSNVAQLRRGMREKGARKEPGFSWIK 615



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 147/328 (44%), Gaps = 36/328 (10%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           +++   G+  +     SV+ AC   +  +  G ++H   ++SG + +  + ++L+ MY K
Sbjct: 259 RDMRQEGMAMDQYTFGSVLTACGGLRALKE-GKEIHTLIIRSGYNHNVFVGSALVDMYCK 317

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
                 A  +F  M  ++ +SW +++  + QNGF   ++ +F +M   G       L  +
Sbjct: 318 CRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSV 377

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           IS C+ +  LE G Q H   +V G     + VS AL+ LY KC     + ++F++M  R+
Sbjct: 378 ISSCANLASLEEGAQFHCQALVSGLISF-ITVSNALITLYGKCGSIEDSNQLFDEMSFRD 436

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
           EVSWTA++SG       +  IDLF  M  +G+KP  VT   VL AC+     R G    G
Sbjct: 437 EVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACS-----RAGLVERG 491

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
             Y      DH +     H  C                          +I  + ++G L 
Sbjct: 492 QQYFESMLKDHGIIPFSDHYTC--------------------------MIDLFGRAGRLE 525

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSC 343
           EA    ++M      P+S+    +LSSC
Sbjct: 526 EAKNFINKMPF---SPDSIGWATLLSSC 550



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 102/202 (50%), Gaps = 3/202 (1%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           F E+ + ++  ++  +G+  +   L SVI +CA   + +  G Q HC AL SG  +   +
Sbjct: 351 FSEEAVRVF-CDMQRNGIEPDDFTLGSVISSCANLASLEE-GAQFHCQALVSGLISFITV 408

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
           SN+LI++Y K    E + QLFDEM +RD +SW ++++ + Q G    ++++F  M + G 
Sbjct: 409 SNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGL 468

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
              A     ++S CS+ G +E G+Q    ++ D          T ++DL+ +      A 
Sbjct: 469 KPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAK 528

Query: 186 RVFEQMVIR-NEVSWTAMISGC 206
               +M    + + W  ++S C
Sbjct: 529 NFINKMPFSPDSIGWATLLSSC 550


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 199/574 (34%), Positives = 316/574 (55%), Gaps = 7/574 (1%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           ++Q+++LY   L   G+       P ++KAC+  Q  Q  G  +H  A   G   D  +S
Sbjct: 88  FQQSIYLYLHMLQ-LGVTPTNFTFPFLLKACSSLQALQ-LGRLIHTHAHILGLSMDLYVS 145

Query: 67  NSLISMYAKFSKPESAYQLFDEMPY--RDTISWNSIINCFTQNGFYVRSLEMFREMYLCG 124
            +L+ MYAK      A  LF+ + +  RD ++WN++I  F+ +  + +++    +M   G
Sbjct: 146 TALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAG 205

Query: 125 FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
               +  L  I+    Q   L  G+ IHA  I +  F+ +V + TALLD+Y+KCH    A
Sbjct: 206 VTPNSSTLVSILPTIGQANALHQGKAIHAYYIRNFFFD-NVVLQTALLDMYAKCHLLFYA 264

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQ-REGVKPTRVTLTIVLLACAE 243
            ++F  +  +N+V W+AMI G +   +    + L+  M    G+ PT  TL  +L ACA+
Sbjct: 265 RKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQ 324

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
           L DL+ GK +H +    G D D  +  +L+ MY +C   +  A    +    KD V +S+
Sbjct: 325 LTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCG-IMDNAVGFLDEMIAKDTVSYSA 383

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           II G  Q+G   +A+ +F +M+   I P   T++A+L +C+  + L HG   H Y +  G
Sbjct: 384 IISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRG 443

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
              D SI NA+++MYSKCG IT S +IF+ M  RD +SW T+I GYG HG   EAL LF 
Sbjct: 444 FTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQ 503

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS 483
           E+Q  G++PD +T++A+LSAC+H+GLV E +  F+++ +   I   + HY C VDLL ++
Sbjct: 504 ELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAHYICMVDLLARA 563

Query: 484 GKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLS 543
           G +++A   +  MP  P+ RI  +L++ACR H  +E+ E ++ ++    PE   N+ L+S
Sbjct: 564 GNLDEAYTFIQRMPFVPNVRIWGALLAACRTHKNIEMGEQVSKKIQLLGPEGTGNFVLMS 623

Query: 544 MVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            + S  G W  A  +  + R  G  KS G S +E
Sbjct: 624 NIYSSVGRWDDAAYIRSIQRHHGYKKSPGCSWVE 657



 Score =  218 bits (555), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 153/503 (30%), Positives = 256/503 (50%), Gaps = 23/503 (4%)

Query: 59  SDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFR 118
           SD+D   +  L   +   ++ + A  +FD++P    + WN +I  +  +G + +S+ ++ 
Sbjct: 38  SDSDAA-ATQLARYHISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYL 96

Query: 119 EMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKC 178
            M   G          ++  CS +  L+LGR IH    + G   + ++VSTALL +Y+KC
Sbjct: 97  HMLQLGVTPTNFTFPFLLKACSSLQALQLGRLIHTHAHILG-LSMDLYVSTALLHMYAKC 155

Query: 179 HHWLIALRVFEQMV--IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTI 236
            H   A  +F  +    R+ V+W AMI+       +   I     MQ+ GV P   TL  
Sbjct: 156 GHLYQAQTLFNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVS 215

Query: 237 VLLACAELRDLRNGKAIHGYAYCCGFDFDH-HLSAALMHMYCECTEALHPARIIFERTKV 295
           +L    +   L  GKAIH Y Y   F FD+  L  AL+ MY +C   L  AR IF     
Sbjct: 216 ILPTIGQANALHQGKAIHAY-YIRNFFFDNVVLQTALLDMYAKC-HLLFYARKIFNTVNK 273

Query: 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMR-LERIEPNSVTLLAILSSCTRQSFLSHGLG 354
           K+ V WS++I GY     +S+A+ L+  M  +  + P   TL  +L +C + + L  G  
Sbjct: 274 KNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKK 333

Query: 355 VHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGY 414
           +HC+++K+G++ D ++GN+L++MY+KCG + ++    +EM A+D VS++ +ISG   +GY
Sbjct: 334 LHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGY 393

Query: 415 GEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAE-----TLFNNVMKEKKIALA 469
            E+AL +F +MQ SG+ P   T++A+L AC+H   ++        T+      +  I  A
Sbjct: 394 AEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDTSICNA 453

Query: 470 IEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL- 528
           I      +D+  K GKI  + ++   M  +      ++++    IHG    A  L  +L 
Sbjct: 454 I------IDMYSKCGKITISREIFDRMQNRDIIS-WNTMIIGYGIHGLCVEALSLFQELQ 506

Query: 529 -IEAEPENAANYTLLSMVCSESG 550
            +  +P++     +LS  CS SG
Sbjct: 507 ALGLKPDDVTLIAVLS-ACSHSG 528


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 194/570 (34%), Positives = 318/570 (55%), Gaps = 12/570 (2%)

Query: 17  ELHPSGLY----SNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISM 72
           +L+ S LY     N    P V+KAC+ A      G  +H  A   G   D  +S +LI +
Sbjct: 85  DLYRSMLYFRVPPNKYTFPFVLKACS-ALADLCAGRTIHAHAAAVGLHTDLFVSTALIDL 143

Query: 73  YAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY-LCGFVLKAEL 131
           Y + ++   A  +F +MP RD ++WN+++  +  +G Y  ++    +M    G    A  
Sbjct: 144 YIRCARFGPAANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNAST 203

Query: 132 LAGIISLCSQIGELELGRQIHALVI---VDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
           L  ++ L +Q G L  G  +HA  +   +D + E  V + TALLD+Y+KC H + A RVF
Sbjct: 204 LVSLLPLLAQHGALFQGTSVHAYCLRAYLDQN-EEQVLIGTALLDMYAKCKHLVYACRVF 262

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVT-LTIVLLACAELRDL 247
             M +RNEV+W+A+I G +         +LF+ M  EG+     T +   L  CA L DL
Sbjct: 263 HGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADL 322

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
           R G  +H      G   D     +L+ MY +    ++ A ++F+   +KD + + +++ G
Sbjct: 323 RMGTQLHALLAKSGIHADLTAGNSLLSMYAK-AGLINEATMLFDEIAIKDTISYGALLSG 381

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
           Y Q+G   EA  +F +M+   ++P+  T+++++ +C+  + L HG   H  ++  GL  +
Sbjct: 382 YVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALE 441

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
            SI N+L++MY+KCG I  S Q+F++M ARD VSW T+I+GYG HG G+EA  LFL M+ 
Sbjct: 442 TSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKN 501

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487
            G EPD +T + +++AC+H+GLV E +  F+ +  +  I   +EHY C VDLL + G ++
Sbjct: 502 QGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGFLD 561

Query: 488 DACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCS 547
           +A + + +MP+K   R+  +L+ ACRIH  +++ + ++  + +  PE   N+ LLS + S
Sbjct: 562 EAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRMIQKLGPEGTGNFVLLSNIFS 621

Query: 548 ESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +G +  A EV  + + KG  KS G S IE
Sbjct: 622 AAGRFDEAAEVRIIQKVKGFKKSPGCSWIE 651



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 102/373 (27%), Positives = 171/373 (45%), Gaps = 49/373 (13%)

Query: 183 IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
           +A +VF+++   +  ++ A+I        +   IDL+R+M    V P + T   VL AC+
Sbjct: 51  LARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVLKACS 110

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
            L DL  G+ IH +A   G   D  +S AL+ +Y  C     PA  +F +  ++DVV W+
Sbjct: 111 ALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCAR-FGPAANVFAKMPMRDVVAWN 169

Query: 303 SIIRGYSQSGDLSEAMK-LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           +++ GY+  G    A+  L        + PN+ TL+++L    +   L  G  VH Y ++
Sbjct: 170 AMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLR 229

Query: 362 AGLNFD---VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEA 418
           A L+ +   V IG AL++MY+KC  +  + ++F+ M  R+ V+W+ LI G+       EA
Sbjct: 230 AYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEA 289

Query: 419 LQLFLEM------------------------------------QESGVEPDAITVLAILS 442
             LF +M                                     +SG+  D     ++LS
Sbjct: 290 FNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLS 349

Query: 443 ACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP---MK 499
               AGL+ EA  LF+ +  +  I+     Y   +    ++GK E+A  V   M    ++
Sbjct: 350 MYAKAGLINEATMLFDEIAIKDTIS-----YGALLSGYVQNGKAEEAFLVFKKMQACNVQ 404

Query: 500 PSTRILSSLVSAC 512
           P    + SL+ AC
Sbjct: 405 PDIATMVSLIPAC 417


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 180/550 (32%), Positives = 315/550 (57%), Gaps = 3/550 (0%)

Query: 29  ILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDE 88
           ++PSV+KAC    +    G ++H   +K+G   D  + N+LI MY++      A  LFD+
Sbjct: 126 VIPSVLKACCLIPSFL-LGQEVHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDK 184

Query: 89  MPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELG 148
           +  +D +SW+++I  + ++G    +L++ R+M++         +  I  + +++ +L+LG
Sbjct: 185 IENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLG 244

Query: 149 RQIHALVIVDGSFELS-VFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCI 207
           + +HA V+ +G    S V + TAL+D+Y KC +   A RVF+ +   + +SWTAMI+  I
Sbjct: 245 KAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYI 304

Query: 208 DSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
              N + G+ LF  M  EG+ P  +T+  ++  C     L  GK +H +    GF     
Sbjct: 305 HCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLV 364

Query: 268 LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
           L+ A + MY +C + +  AR +F+  K KD+++WS++I  Y+Q+  + EA  +F  M   
Sbjct: 365 LATAFIDMYGKCGD-VRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGC 423

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
            I PN  T++++L  C +   L  G  +H YI K G+  D+ +  + ++MY+ CG I ++
Sbjct: 424 GIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTA 483

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHA 447
           H++F E   RD   W  +ISG+  HG+GE AL+LF EM+  GV P+ IT +  L AC+H+
Sbjct: 484 HRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHACSHS 543

Query: 448 GLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSS 507
           GL++E + LF+ ++ E      +EHY C VDLLG++G +++A +++ +MPM+P+  +  S
Sbjct: 544 GLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNIAVFGS 603

Query: 508 LVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567
            ++AC++H  +++ E  A Q +  EP  +    L+S + + +  W     + R M+ +G+
Sbjct: 604 FLAACKLHKNIKLGEWAAKQFLSLEPHKSGYNVLMSNIYASANRWGDVAYIRRAMKDEGI 663

Query: 568 SKSYGFSRIE 577
            K  G S IE
Sbjct: 664 VKEPGVSSIE 673



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 89/169 (52%)

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVH 356
           +  I S +I  Y ++   ++A K+++ MR    E ++  + ++L +C        G  VH
Sbjct: 88  NAAIHSFLITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVH 147

Query: 357 CYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGE 416
            +++K G + DV + NAL+ MYS+ GS+  +  +F+++  +D VSW+T+I  Y   G  +
Sbjct: 148 GFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLD 207

Query: 417 EALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           EAL L  +M    V+P  I +++I         +K  + +   VM+  K
Sbjct: 208 EALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGK 256


>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 199/622 (31%), Positives = 329/622 (52%), Gaps = 69/622 (11%)

Query: 24  YSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAY 83
           +++++    ++ +C  ++    +   +H + +KSG   +  I N LI  Y+K    E   
Sbjct: 16  FTDSSPFAKLLDSCIKSKLSAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGR 75

Query: 84  QLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM----------------------- 120
           Q+FD+MP R+  +WNS++   T+ GF   +  +FR M                       
Sbjct: 76  QVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEE 135

Query: 121 YLC--------GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALL 172
            LC        GFVL     A ++S CS + ++  G Q+H+L I    F   V++ +AL+
Sbjct: 136 ALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSL-IAKSPFLSDVYIGSALV 194

Query: 173 DLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRV 232
           D+YSKC +   A RVF++M  RN VSW ++I+    +      +D+F+ M    V+P  V
Sbjct: 195 DMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEV 254

Query: 233 TLTIVLLACAELRDLRNGKAIHGYAYCCG-FDFDHHLSAALMHMYCECTE---------- 281
           TL  V+ ACA L  ++ G+ +HG          D  LS A + MY +C+           
Sbjct: 255 TLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDS 314

Query: 282 --------------------ALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
                               +   AR++F +   ++VV W+++I GY+Q+G+  EA+ LF
Sbjct: 315 MPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLF 374

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF------DVSIGNALM 375
             ++ E + P   +   IL +C   + L  G+  H +++K G  F      D+ +GN+L+
Sbjct: 375 CLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLI 434

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           +MY KCG +   + +F +M  RD VSW  +I G+  +GYG EAL+LF EM ESG +PD I
Sbjct: 435 DMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHI 494

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           T++ +LSAC HAG V+E    F+++ ++  +A   +HY C VDLLG++G +E+A  ++  
Sbjct: 495 TMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEE 554

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGA 555
           MPM+P + I  SL++AC++H  + + + +A +L+E EP N+  Y LLS + +E G W   
Sbjct: 555 MPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDV 614

Query: 556 EEVWRVMRAKGLSKSYGFSRIE 577
             V + MR +G++K  G S I+
Sbjct: 615 MNVRKSMRKEGVTKQPGCSWIK 636



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 138/526 (26%), Positives = 241/526 (45%), Gaps = 80/526 (15%)

Query: 18  LHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFS 77
           +H  G   N     SV+ AC+      + G+Q+H    KS   +D  I ++L+ MY+K  
Sbjct: 143 MHKEGFVLNEYSFASVLSACS-GLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCG 201

Query: 78  KPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS 137
               A ++FDEM  R+ +SWNS+I CF QNG  V +L++F+ M           LA +IS
Sbjct: 202 NVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVIS 261

Query: 138 LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI---- 193
            C+ +  +++G+++H  V+ +      + +S A +D+Y+KC     A  +F+ M I    
Sbjct: 262 ACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVI 321

Query: 194 ---------------------------RNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
                                      RN VSW A+I+G   +   +  + LF  ++RE 
Sbjct: 322 AETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRES 381

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAI------HGYAYCCGFDFDHHLSAALMHMYCECT 280
           V PT  +   +L ACA+L +L  G         HG+ +  G + D  +  +L+ MY +C 
Sbjct: 382 VCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCG 441

Query: 281 EALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAIL 340
             +    ++F +   +D V W+++I G++Q+G  +EA++LF  M     +P+ +T++ +L
Sbjct: 442 -CVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVL 500

Query: 341 SSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFV 400
           S+C    F+  G   H +                          +S  + F     RD  
Sbjct: 501 SACGHAGFVEEGR--HYF--------------------------SSMTRDFGVAPLRDH- 531

Query: 401 SWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNV 460
            +T ++   G  G+ EEA  +  EM    ++PD++   ++L+AC     V    TL    
Sbjct: 532 -YTCMVDLLGRAGFLEEAKSMIEEMP---MQPDSVIWGSLLAACK----VHRNITL-GKY 582

Query: 461 MKEKKIALAIEHYACYV---DLLGKSGKIEDACKVVSTMPMKPSTR 503
           + EK + +   +   YV   ++  + GK ED   V  +M  +  T+
Sbjct: 583 VAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTK 628


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 194/566 (34%), Positives = 325/566 (57%), Gaps = 14/566 (2%)

Query: 19  HPSGLYSNT-----AILPSVIKACAYAQTHQHFGLQLHCTALK-SGSDADPVISNSLISM 72
           HP   Y  T     A+L S     ++ Q     G QLH   +  S  + +  ++  L + 
Sbjct: 50  HPLQQYPLTSLQCGALLQSFTNTKSFKQ-----GQQLHAHMISFSILENNTYLNTKLAAF 104

Query: 73  YAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELL 132
           YA       A  +FD +  +++  WN +I  +  NG  ++SL ++REM   G        
Sbjct: 105 YAGCGLMSQAEVIFDGIVLKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTY 164

Query: 133 AGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV 192
             ++  C  +  +E+GR++H+ V+V G  E  ++V  +LL +Y+K      A  VF++M 
Sbjct: 165 PFVLKACGDLLLVEIGRRVHSEVVVCG-LESDIYVGNSLLAMYAKFGDMGTARMVFDRMA 223

Query: 193 IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKA 252
            R+  SW  MISG   + +  T   +F  M + G+     TL  +L ACA+L+ ++ GK 
Sbjct: 224 ERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKV 283

Query: 253 IHGYAYCCGF-DFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQS 311
           IHGYA      +++   + +L+ MYC C   +  AR +FER + KD V W+S+I GY+++
Sbjct: 284 IHGYAVRNSIGNYNKFFTNSLIEMYCNCN-CMVDARRLFERVRWKDTVSWNSMILGYARN 342

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
           GD  E+++LF RM L+   P+ VT +A+L +C + + L +G+ +H Y++K G + +  +G
Sbjct: 343 GDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVG 402

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
            AL++MYSKCGS+  S ++F+EM  +  VSW+ +++GYG HG G EA+ +   M+ + V 
Sbjct: 403 TALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGREAISILDGMKANSVI 462

Query: 432 PDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACK 491
           PD     +ILSAC+HAGLV E + +F  + KE  +  A+ HY+C VDLLG++G +++A  
Sbjct: 463 PDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHYSCMVDLLGRAGHLDEAYV 522

Query: 492 VVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGN 551
           ++ TM +KP++ I ++L++A R+H  +++AE+ A ++ +  P+  ++Y  LS + +    
Sbjct: 523 IIRTMEIKPTSDIWAALLTASRLHKNIKLAEISAQKVFDMNPKVVSSYICLSNIYAAEKR 582

Query: 552 WLGAEEVWRVMRAKGLSKSYGFSRIE 577
           W   E V  ++R KGL KS G S IE
Sbjct: 583 WDDVERVRAMVRRKGLKKSPGCSFIE 608


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 189/532 (35%), Positives = 297/532 (55%), Gaps = 3/532 (0%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G ++H   ++ G ++D  +  +L++M  +    +SA Q F  +  RD + +N++I    Q
Sbjct: 248 GKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQ 307

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           +G  V + E +  M   G  L       I++ CS    LE G+ IH+ +  DG     V 
Sbjct: 308 HGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDG-HSSDVQ 366

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           +  AL+ +Y++C     A  +F  M  R+ +SW A+I+G    ++    + L++ MQ EG
Sbjct: 367 IGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEG 426

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           VKP RVT   +L ACA      +GK IH      G   + HL+ ALM+MY  C  +L  A
Sbjct: 427 VKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCG-SLMEA 485

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
           + +FE T+ +DV+ W+S+I G++Q G    A KLF  M+ E +EP+++T  ++LS C   
Sbjct: 486 QNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNP 545

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
             L  G  +H  I ++GL  DV++GNAL+NMY +CGS+  +  +F+ +  RD +SWT +I
Sbjct: 546 EALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMI 605

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEP-DAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
            G    G   +A++LF +MQ  G  P D  T  +ILSACNHAGLV E   +F+++  E  
Sbjct: 606 GGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYG 665

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
           +   IEHY C V LLG++ + ++A  +++ MP  P   +  +L+ ACRIHG + +AE  A
Sbjct: 666 VLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAA 725

Query: 526 HQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +  ++    N A Y LLS V + +G W    ++ RVM  +G+ K  G S IE
Sbjct: 726 NNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIE 777



 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 151/562 (26%), Positives = 280/562 (49%), Gaps = 8/562 (1%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           F ++   L+ +E+  +G   N     S++ AC Y+      G ++H   +K+G   DP +
Sbjct: 108 FKKKAFQLF-EEMQNAGFIPNKITYISILTAC-YSPAELENGKKIHSQIIKAGYQRDPRV 165

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
            NSL+SMY K      A Q+F  +  RD +S+N+++  + Q  +    L +F +M   G 
Sbjct: 166 QNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGI 225

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
                    ++   +    L+ G++IH L + +G     + V TAL+ +  +C     A 
Sbjct: 226 SPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEG-LNSDIRVGTALVTMCVRCGDVDSAK 284

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
           + F+ +  R+ V + A+I+      +     + +  M+ +GV   R T   +L AC+  +
Sbjct: 285 QAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSK 344

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
            L  GK IH +    G   D  +  AL+ MY  C + L  AR +F     +D++ W++II
Sbjct: 345 ALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGD-LPKARELFYTMPKRDLISWNAII 403

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
            GY++  D  EAM+L+ +M+ E ++P  VT L +LS+C   S  + G  +H  I+++G+ 
Sbjct: 404 AGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIK 463

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            +  + NALMNMY +CGS+  +  +F    ARD +SW ++I+G+  HG  E A +LF EM
Sbjct: 464 SNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEM 523

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
           Q   +EPD IT  ++LS C +   ++  + +   +  E  + L +      +++  + G 
Sbjct: 524 QNEELEPDNITFASVLSGCKNPEALELGKQIHGRIT-ESGLQLDVNLGNALINMYIRCGS 582

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGR-LEVAEMLAHQLIEA-EPENAANYTLLS 543
           ++DA  V  ++  +      ++++  C   G  ++  E+      E   P + + +T + 
Sbjct: 583 LQDARNVFHSLQHR-DVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSIL 641

Query: 544 MVCSESGNWLGAEEVWRVMRAK 565
             C+ +G  L   +++  M ++
Sbjct: 642 SACNHAGLVLEGYQIFSSMESE 663



 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 152/498 (30%), Positives = 258/498 (51%), Gaps = 8/498 (1%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           ++H   +++G   D  +SN LI+MY K      A+Q+F EMP RD ISWNS+I+C+ Q G
Sbjct: 48  RIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQG 107

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
           F  ++ ++F EM   GF+        I++ C    ELE G++IH+ +I  G ++    V 
Sbjct: 108 FKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAG-YQRDPRVQ 166

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
            +LL +Y KC     A +VF  +  R+ VS+  M+            + LF  M  EG+ 
Sbjct: 167 NSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGIS 226

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
           P +VT   +L A      L  GK IH      G + D  +  AL+ M   C + +  A+ 
Sbjct: 227 PDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGD-VDSAKQ 285

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
            F+    +DVV+++++I   +Q G   EA + + RMR + +  N  T L+IL++C+    
Sbjct: 286 AFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKA 345

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
           L  G  +H +I + G + DV IGNAL++MY++CG +  + ++F  M  RD +SW  +I+G
Sbjct: 346 LEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAG 405

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468
           Y       EA++L+ +MQ  GV+P  +T L +LSAC ++    + + +  ++++    + 
Sbjct: 406 YARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSN 465

Query: 469 AIEHYA-CYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQ 527
              H A   +++  + G + +A  V      +      +S+++    HG  E A  L  +
Sbjct: 466 G--HLANALMNMYRRCGSLMEAQNVFEGTQARDVIS-WNSMIAGHAQHGSYETAYKLFQE 522

Query: 528 LI--EAEPENAANYTLLS 543
           +   E EP+N    ++LS
Sbjct: 523 MQNEELEPDNITFASVLS 540



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 158/334 (47%), Gaps = 4/334 (1%)

Query: 217 DLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMY 276
           D+    Q    +  R T   +L  C   R L   K IH      G   D  LS  L++MY
Sbjct: 13  DVSNTHQPRPTETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMY 72

Query: 277 CECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTL 336
            +C   L  A  +F+    +DV+ W+S+I  Y+Q G   +A +LF  M+     PN +T 
Sbjct: 73  VKCRSVLD-AHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITY 131

Query: 337 LAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA 396
           ++IL++C   + L +G  +H  I+KAG   D  + N+L++MY KCG +  + Q+F  ++ 
Sbjct: 132 ISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISP 191

Query: 397 RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETL 456
           RD VS+ T++  Y    Y +E L LF +M   G+ PD +T + +L A     ++ E + +
Sbjct: 192 RDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRI 251

Query: 457 FNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG 516
            + +  E+ +   I      V +  + G ++ A +    +  +    + ++L++A   HG
Sbjct: 252 -HKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADR-DVVVYNALIAALAQHG 309

Query: 517 -RLEVAEMLAHQLIEAEPENAANYTLLSMVCSES 549
             +E  E       +    N   Y  +   CS S
Sbjct: 310 HNVEAFEQYYRMRSDGVALNRTTYLSILNACSTS 343


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 192/599 (32%), Positives = 323/599 (53%), Gaps = 41/599 (6%)

Query: 16  QELHPSGLYSNTAILPSVIKACA-YAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYA 74
           + +  + +  N     S++KAC  Y+   +    ++H     SG + D  ++ +LI+MY+
Sbjct: 168 ERMKDANIEPNRITFLSILKACNNYSMLEK--AREIHTVVKASGMETDVAVATALITMYS 225

Query: 75  KFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAG 134
           K  +   A ++F +M  R+ +SW +II    Q+     + E++ +M   G    A     
Sbjct: 226 KCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVS 285

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           +++ C+    L  GR+IH+ +   G  E  V V+ AL+ +Y KC+    A   F++M  R
Sbjct: 286 LLNSCNTPEALNRGRRIHSHISERG-LETDVVVANALITMYCKCNCIQDARETFDRMSKR 344

Query: 195 NEVSWTAMI-----SGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
           + +SW+AMI     SG  D ++ D    L   M+REGV P +VT   +L AC+    L  
Sbjct: 345 DVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQ 404

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI----- 304
           G+ IH      GF+ D  L  A+ +MY +C  +++ A  +F + + K+VV W+S+     
Sbjct: 405 GRQIHAEISKVGFESDRSLQTAIFNMYAKCG-SIYEAEQVFSKMENKNVVAWASLLTMYI 463

Query: 305 --------------------------IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLA 338
                                     I GY+QSGD+++  +L S M++E  +P+ VT+++
Sbjct: 464 KCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIIS 523

Query: 339 ILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARD 398
           IL +C   S L  G  VH   +K GL  D  +  +L+ MYSKCG +T +  +F++++ RD
Sbjct: 524 ILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRD 583

Query: 399 FVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFN 458
            V+W  +++GYG HG G EA+ LF  M +  V P+ IT  A++SAC  AGLV+E   +F 
Sbjct: 584 TVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFR 643

Query: 459 NVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRL 518
            + ++ ++    +HY C VDLLG++G++++A + +  MP +P   +  +L+ AC+ H  +
Sbjct: 644 IMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNV 703

Query: 519 EVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           ++AE  AH ++  EP NA+ Y  LS + +++G W  + +V +VM  KGL K  G S IE
Sbjct: 704 QLAEWAAHHILRLEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSIE 762



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 129/231 (55%), Gaps = 1/231 (0%)

Query: 215 GIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMH 274
            I L   +++ G+     T   ++  CA+LR   +GK +H      G   D +L  +L++
Sbjct: 62  AIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLIN 121

Query: 275 MYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSV 334
            Y +  + +     +F R  ++DVV WSS+I  Y+ +   ++A   F RM+   IEPN +
Sbjct: 122 FYSKFGD-VASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRI 180

Query: 335 TLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEM 394
           T L+IL +C   S L     +H  +  +G+  DV++  AL+ MYSKCG I+ + +IF +M
Sbjct: 181 TFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKM 240

Query: 395 AARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
             R+ VSWT +I     H    EA +L+ +M ++G+ P+A+T +++L++CN
Sbjct: 241 KERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCN 291



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 124/239 (51%), Gaps = 3/239 (1%)

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
           ++G L EA++L   ++   +  NS T   I+  C +      G  VH  + + GL  D+ 
Sbjct: 55  KAGRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIY 114

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
           +GN+L+N YSK G + S  Q+F  M  RD V+W+++I+ Y  + +  +A   F  M+++ 
Sbjct: 115 LGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDAN 174

Query: 430 VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
           +EP+ IT L+IL ACN+  ++++A  + + V+K   +   +      + +  K G+I  A
Sbjct: 175 IEPNRITFLSILKACNNYSMLEKAREI-HTVVKASGMETDVAVATALITMYSKCGEISLA 233

Query: 490 CKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE-PENAANYTLLSMVCS 547
           C++   M  +      ++++ A   H +L  A  L  ++++A    NA  +  L   C+
Sbjct: 234 CEIFQKMKERNVVS-WTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCN 291


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 183/561 (32%), Positives = 322/561 (57%), Gaps = 6/561 (1%)

Query: 18  LHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFS 77
           L  + +YS+  +   +++ CA  ++ +  G ++H   LKSG   +  + N+L+SMYAK  
Sbjct: 40  LQGTRVYSD--VFRGLLQECARLRSLEQ-GREVHAAILKSGIQPNRYLENTLLSMYAKCG 96

Query: 78  KPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS 137
               A ++FD +  R+ +SW ++I  F      + + + +  M L G          +++
Sbjct: 97  SLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLN 156

Query: 138 LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197
             +    L+LG+++H + IV+   EL   V T+L+ +Y+KC     A  +F+++  +N V
Sbjct: 157 AFTNPELLQLGQKVH-MEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVV 215

Query: 198 SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
           +WT +I+G       D  ++L   MQ+  V P ++T   +L  C     L +GK +H Y 
Sbjct: 216 TWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYI 275

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
              G+  +  +  +L+ MYC+C   L  AR +F     +DVV W++++ GY+Q G   EA
Sbjct: 276 IQSGYGRELWVVNSLITMYCKCG-GLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEA 334

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
           + LF RM+ + I+P+ +T  ++L+SC+  +FL  G  +H  ++ AG N DV + +AL++M
Sbjct: 335 INLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSM 394

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGY-GFHGYGEEALQLFLEMQESGVEPDAIT 436
           Y+KCGS+  +  +FN+M+ R+ V+WT +I+G    HG   EAL+ F +M++ G++PD +T
Sbjct: 395 YAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVT 454

Query: 437 VLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
             ++LSAC H GLV+E    F ++  +  I   +EHY+C+VDLLG++G +E+A  V+ +M
Sbjct: 455 FTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSM 514

Query: 497 PMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAE 556
           P  P   +  +L+SACR+H  +E  E  A  +++ +P++   Y  LS + + +G +  AE
Sbjct: 515 PFIPGPSVWGALLSACRVHSDVERGERAAENVLKLDPDDDGAYVALSSIYAAAGRYEDAE 574

Query: 557 EVWRVMRAKGLSKSYGFSRIE 577
           +V +VM  + + K  G S IE
Sbjct: 575 KVRQVMEKRDVVKEPGQSWIE 595



 Score =  235 bits (600), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 131/462 (28%), Positives = 244/462 (52%), Gaps = 10/462 (2%)

Query: 93  DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIH 152
           +T++ +  ++   + G    +L +   M L G  + +++  G++  C+++  LE GR++H
Sbjct: 11  ETLANSRDVSVLCKTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVH 70

Query: 153 ALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNY 212
           A ++  G  + + ++   LL +Y+KC     A RVF+ +  RN VSWTAMI   +     
Sbjct: 71  AAILKSG-IQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKN 129

Query: 213 DTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAAL 272
                 +  M+  G KP +VT   +L A      L+ G+ +H      G + +  +  +L
Sbjct: 130 LEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSL 189

Query: 273 MHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPN 332
           + MY +C + +  AR+IF+R   K+VV W+ +I GY+Q G +  A++L   M+   + PN
Sbjct: 190 VGMYAKCGD-ISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPN 248

Query: 333 SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFN 392
            +T  +IL  CT  + L HG  VH YI+++G   ++ + N+L+ MY KCG +  + ++F+
Sbjct: 249 KITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFS 308

Query: 393 EMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKE 452
           ++  RD V+WT +++GY   G+ +EA+ LF  MQ+ G++PD +T  ++L++C+    ++E
Sbjct: 309 DLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQE 368

Query: 453 AETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSAC 512
            + +   ++      L +   +  V +  K G ++DA  V + M  +      + +   C
Sbjct: 369 GKRIHQQLV-HAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCC 427

Query: 513 RIHGR----LEVAEMLAHQLIEAEPENAANYTLLSMVCSESG 550
             HGR    LE  + +  Q I  +P+     ++LS  C+  G
Sbjct: 428 AQHGRCREALEYFDQMKKQGI--KPDKVTFTSVLS-ACTHVG 466


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 185/548 (33%), Positives = 320/548 (58%), Gaps = 9/548 (1%)

Query: 33  VIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYR 92
           ++K C   +     G ++H   +KSG   D      L +MYAK  +   A ++FD MP R
Sbjct: 141 LLKVCG-DEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPER 199

Query: 93  DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELEL---GR 149
           D +SWN+I+  ++QNG    +LEM + M  C   LK   +  I+S+   +  L L   G+
Sbjct: 200 DLVSWNTIVAGYSQNGMARMALEMVKSM--CEENLKPSFIT-IVSVLPAVSALRLISVGK 256

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
           +IH   +  G F+  V +STAL+D+Y+KC     A ++F+ M+ RN VSW +MI   + +
Sbjct: 257 EIHGYAMRSG-FDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQN 315

Query: 210 QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS 269
           +N    + +F+ M  EGVKPT V++   L ACA+L DL  G+ IH  +   G D +  + 
Sbjct: 316 ENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVV 375

Query: 270 AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
            +L+ MYC+C E +  A  +F + + + +V W+++I G++Q+G   +A+  FS+MR   +
Sbjct: 376 NSLISMYCKCKE-VDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTV 434

Query: 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
           +P++ T ++++++    S   H   +H  +M++ L+ +V +  AL++MY+KCG+I  +  
Sbjct: 435 KPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARL 494

Query: 390 IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL 449
           IF+ M+ R   +W  +I GYG HG+G+ AL+LF EMQ+  ++P+ +T L+++SAC+H+GL
Sbjct: 495 IFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGL 554

Query: 450 VKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLV 509
           V+     F  + +   I L+++HY   VDLLG++G++ +A   +  MP+KP+  +  +++
Sbjct: 555 VEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAML 614

Query: 510 SACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSK 569
            AC+IH  +  AE  A +L E  P++   + LL+ +   +  W    +V   M  +GL K
Sbjct: 615 GACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRK 674

Query: 570 SYGFSRIE 577
           + G S +E
Sbjct: 675 TPGCSMVE 682



 Score =  211 bits (537), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 141/538 (26%), Positives = 273/538 (50%), Gaps = 23/538 (4%)

Query: 20  PSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKP 79
           P+ +Y + A L  +++ C+  +  +    Q+     K+G   +      L+S++ ++   
Sbjct: 32  PANVYEHPAAL--LLERCSSLKELR----QILPLVFKNGLYQEHFFQTKLVSLFCRYGSV 85

Query: 80  ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLC 139
           + A ++F+ +  +  + +++++  F +     ++L+ F  M              ++ +C
Sbjct: 86  DEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVC 145

Query: 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSW 199
               EL +G++IH L++  G F L +F  T L ++Y+KC     A +VF++M  R+ VSW
Sbjct: 146 GDEAELRVGKEIHGLLVKSG-FSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSW 204

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
             +++G   +      +++ ++M  E +KP+ +T+  VL A + LR +  GK IHGYA  
Sbjct: 205 NTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMR 264

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
            GFD   ++S AL+ MY +C  +L  AR +F+    ++VV W+S+I  Y Q+ +  EAM 
Sbjct: 265 SGFDSLVNISTALVDMYAKCG-SLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAML 323

Query: 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           +F +M  E ++P  V+++  L +C     L  G  +H   ++ GL+ +VS+ N+L++MY 
Sbjct: 324 IFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYC 383

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           KC  + ++  +F ++ +R  VSW  +I G+  +G   +AL  F +M+   V+PD  T ++
Sbjct: 384 KCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVS 443

Query: 440 ILSACNHAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
           +++A     +   A+ +   VM+   +K + +        VD+  K G I  A  +   M
Sbjct: 444 VITAIAELSITHHAKWIHGVVMRSCLDKNVFVT----TALVDMYAKCGAIMIARLIFDMM 499

Query: 497 PMKPSTRILSSLVSACRIHG----RLEVAEMLAHQLIEAEPENAANYTLLSMVCSESG 550
             +  T   ++++     HG     LE+ E +    I+    N   +  +   CS SG
Sbjct: 500 SERHVT-TWNAMIDGYGTHGFGKAALELFEEMQKGTIKP---NGVTFLSVISACSHSG 553


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  351 bits (901), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 198/559 (35%), Positives = 318/559 (56%), Gaps = 7/559 (1%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           SG+  N   L S+I  C   +     G ++H   +K G D+D   +N+L+ MYAK    E
Sbjct: 105 SGIRPNEFSLSSMINVCTGLEDSVQ-GRKIHGYLIKLGYDSDAFSANALVDMYAKVGILE 163

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
            A  +FDE+   D +SWN+II     + ++ R+LE+ REM   G       L+  +  C+
Sbjct: 164 DASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACA 223

Query: 141 QIGELELGRQIHA-LVIVD-GSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
            +   ELGRQ+H+ L+ +D GS     F+   L+D+YSKC+    A  VF+ M  R+ ++
Sbjct: 224 GMALRELGRQLHSSLIKMDMGS---DSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIA 280

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258
           W A+ISG   ++  +    LF  M  EG+   + TL+ VL + A L+     + IH  + 
Sbjct: 281 WNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSL 340

Query: 259 CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAM 318
             GF+FD+++  +L+  Y +C       R+ FE + + D+V+++S++  Y+Q G   EA+
Sbjct: 341 KSGFEFDNYVVNSLIDTYGKCGHVEDATRV-FEESPIVDLVLFTSLVTAYAQDGQGEEAL 399

Query: 319 KLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMY 378
           +L+  M+   I+P+S    ++L++C   S    G  VH +I+K G   D+  GN+L+NMY
Sbjct: 400 RLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMY 459

Query: 379 SKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
           +KCGSI  +   F+ +  R  VSW+ +I G   HGYG+EALQLF +M + GV P+ IT++
Sbjct: 460 AKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLV 519

Query: 439 AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPM 498
           ++L ACNHAGLV EA+  FN++     I    EHYAC +DLLG++GK+E A ++V+ MP 
Sbjct: 520 SVLCACNHAGLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPF 579

Query: 499 KPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEV 558
           + +  +  +L+ A RIH  +++ E  A  L+  EPE +  + LL+ + +  G W     V
Sbjct: 580 QANALVWGALLGAARIHKNIDLGEQAAEMLLALEPEKSGTHVLLANIYASVGMWDKVARV 639

Query: 559 WRVMRAKGLSKSYGFSRIE 577
            R+M+   + K  G S +E
Sbjct: 640 RRLMKDGKVKKEPGMSWLE 658



 Score =  258 bits (659), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 158/533 (29%), Positives = 281/533 (52%), Gaps = 12/533 (2%)

Query: 18  LHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFS 77
           +H  G+  N    PSV+KAC   +     G Q+H   + +G D+D  ++NSL+ +YAK  
Sbjct: 1   MHLLGIKCNEFAFPSVLKACTVTKDLV-LGKQVHGIVVVTGFDSDEFVANSLVILYAKCG 59

Query: 78  KPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS 137
               A  LFD +P R  +SWN++ +C+  +  +  ++ +F +M L G       L+ +I+
Sbjct: 60  GFGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMIN 119

Query: 138 LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197
           +C+ + +   GR+IH  +I  G ++   F + AL+D+Y+K      A  VF+++   + V
Sbjct: 120 VCTGLEDSVQGRKIHGYLIKLG-YDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIV 178

Query: 198 SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
           SW A+I+GC+  + +   ++L R M + G+ P   TL+  L ACA +     G+ +H   
Sbjct: 179 SWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSL 238

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
                  D  L   L+ MY +C  ++  AR++F+    +D++ W+++I G+SQ+ +  EA
Sbjct: 239 IKMDMGSDSFLGVGLIDMYSKCN-SMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEA 297

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
             LF  M  E I  N  TL  +L S            +H   +K+G  FD  + N+L++ 
Sbjct: 298 ASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDT 357

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           Y KCG +  + ++F E    D V +T+L++ Y   G GEEAL+L+LEMQ+ G++PD+   
Sbjct: 358 YGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVC 417

Query: 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYA--CYVDLLGKSGKIEDACKVVST 495
            ++L+AC      ++ + +  +++   K     + +A    V++  K G IEDA    S 
Sbjct: 418 SSLLNACASLSAYEQGKQVHVHIL---KFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSR 474

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE-AEPENAANYTLLSMVCS 547
           +P++      S+++     HG  + A  L  Q+++   P N  + TL+S++C+
Sbjct: 475 IPVRGIVS-WSAMIGGLAQHGYGKEALQLFKQMLKVGVPPN--HITLVSVLCA 524



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 121/434 (27%), Positives = 215/434 (49%), Gaps = 17/434 (3%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           ++ + L L + E++ SG+  N   L S +KACA     +  G QLH + +K    +D  +
Sbjct: 192 YHHRALELLR-EMNKSGMCPNMFTLSSALKACA-GMALRELGRQLHSSLIKMDMGSDSFL 249

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
              LI MY+K +  + A  +F  MP RD I+WN++I+  +QN     +  +F  M+  G 
Sbjct: 250 GVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGI 309

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
                 L+ ++   + +    + RQIHAL +  G FE   +V  +L+D Y KC H   A 
Sbjct: 310 GFNQTTLSTVLKSIAALQANYMCRQIHALSLKSG-FEFDNYVVNSLIDTYGKCGHVEDAT 368

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
           RVFE+  I + V +T++++        +  + L+  MQ  G+KP     + +L ACA L 
Sbjct: 369 RVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLS 428

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
               GK +H +    GF  D     +L++MY +C  ++  A   F R  V+ +V WS++I
Sbjct: 429 AYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCG-SIEDASCAFSRIPVRGIVSWSAMI 487

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
            G +Q G   EA++LF +M    + PN +TL+++L +C     ++       Y     + 
Sbjct: 488 GGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEA---KHYFNSMKIL 544

Query: 366 FDVSIGN----ALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFH---GYGEE 417
           F +         ++++  + G + ++ ++ N+M  + + + W  L+     H     GE+
Sbjct: 545 FGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNIDLGEQ 604

Query: 418 ALQLF--LEMQESG 429
           A ++   LE ++SG
Sbjct: 605 AAEMLLALEPEKSG 618



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 131/471 (27%), Positives = 223/471 (47%), Gaps = 22/471 (4%)

Query: 120 MYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH 179
           M+L G          ++  C+   +L LG+Q+H +V+V G F+   FV+ +L+ LY+KC 
Sbjct: 1   MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTG-FDSDEFVANSLVILYAKCG 59

Query: 180 HWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLL 239
            +  A  +F+ +  R+ VSW A+ S  + S  +   + LF  M   G++P   +L+ ++ 
Sbjct: 60  GFGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMIN 119

Query: 240 ACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVV 299
            C  L D   G+ IHGY    G+D D   + AL+ MY +    L  A  +F+     D+V
Sbjct: 120 VCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAK-VGILEDASSVFDEIAKPDIV 178

Query: 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
            W++II G         A++L   M    + PN  TL + L +C   +    G  +H  +
Sbjct: 179 SWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSL 238

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEAL 419
           +K  +  D  +G  L++MYSKC S+  +  +F  M  RD ++W  +ISG+  +   EEA 
Sbjct: 239 IKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAA 298

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIE---HYACY 476
            LF  M   G+  +  T+  +L         K    L  N M  +  AL+++    +  Y
Sbjct: 299 SLFPLMHTEGIGFNQTTLSTVL---------KSIAALQANYMCRQIHALSLKSGFEFDNY 349

Query: 477 V-----DLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA 531
           V     D  GK G +EDA +V    P+     + +SLV+A    G+ E A  L  ++ + 
Sbjct: 350 VVNSLIDTYGKCGHVEDATRVFEESPI-VDLVLFTSLVTAYAQDGQGEEALRLYLEMQDR 408

Query: 532 --EPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIENEY 580
             +P++    +LL+   S S    G +    +++   +S  +  + + N Y
Sbjct: 409 GIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMY 459


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 198/575 (34%), Positives = 321/575 (55%), Gaps = 9/575 (1%)

Query: 5   HFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPV 64
           HF+   +  + + L  S L S+    P VI+AC         G ++HC  LK G + D  
Sbjct: 121 HFH-AAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLDD----GRKVHCLVLKLGFECDVY 175

Query: 65  ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG 124
           I+ S I  Y++F     A  LFD M  RD  +WN++I+ F  NG    +LE+F EM    
Sbjct: 176 IAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKS 235

Query: 125 FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
             + +  ++ ++ +C Q+ ++  G  IH   I  G  E  +FV  AL+++Y+K      A
Sbjct: 236 VSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLG-LEFDLFVCNALINMYAKFGELRSA 294

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
             +F QM +R+ VSW ++++    ++     + ++  M   GV P  +TL  +    AEL
Sbjct: 295 ETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAEL 354

Query: 245 RDLRNGKAIHGY-AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
            +  + ++IHG+    C F  D  L  A++ MY +    +  AR +FE   VKDV+ W+S
Sbjct: 355 GNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLG-FIDSARKVFEGLPVKDVISWNS 413

Query: 304 IIRGYSQSGDLSEAMKLFSRMRL-ERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
           +I GYSQ+G  +EA+ ++S MR      PN  T ++IL++ ++   L  G+  H  ++K 
Sbjct: 414 LITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKN 473

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
            L FD+ +   L++MY KCG +  +  +F E+  +  VSW  +IS +G HGYG +A++LF
Sbjct: 474 FLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAIISCHGLHGYGLKAVKLF 533

Query: 423 LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGK 482
            EMQ  GV+PD IT +++LSAC+H+GLV E +  F  + +   I  +++HY C VDL G+
Sbjct: 534 KEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQETYGIRPSLKHYGCMVDLFGR 593

Query: 483 SGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLL 542
           +G +E A   V  MP++P   +  +L+ ACRIH  +E+   ++  L++ E EN   Y LL
Sbjct: 594 AGHLEKAFNFVKNMPVRPDVSVWGALLGACRIHENVELVRTVSDHLLKVESENVGYYVLL 653

Query: 543 SMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           S + ++ G+W G +EV  + R +GL K+ G+S IE
Sbjct: 654 SNIYAKLGHWEGVDEVRSLARDRGLKKTPGWSSIE 688



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 155/555 (27%), Positives = 278/555 (50%), Gaps = 26/555 (4%)

Query: 13  LYKQELHPSGLYSNTAILPSVIKACAYAQ------------THQHFGLQLHCTALKSGSD 60
           L+K       LYS TA  P  +      +            T  H   QLH   + SG  
Sbjct: 14  LFKPSFQACSLYSATAA-PKYLDGVENEKREIDFNRIFLYCTKVHLAKQLHALLVVSGKT 72

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
               +S  LI+ YA       A   FD++  +D  +WNS+I+ + + G +  +++ F E 
Sbjct: 73  QSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYARIGHFHAAVDCFNEF 132

Query: 121 YLCGFVLKAEL-LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH 179
               F+         +I  C   G L+ GR++H LV+  G FE  V+++ + +  YS+  
Sbjct: 133 LSTSFLQSDHYTFPPVIRAC---GNLDDGRKVHCLVLKLG-FECDVYIAASFIHFYSRFG 188

Query: 180 HWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLL 239
              +A  +F+ M+IR+  +W AMISG   +      +++F  M+ + V    VT++ +L 
Sbjct: 189 FVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLP 248

Query: 240 ACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVV 299
            C +L D+ +G  IH YA   G +FD  +  AL++MY +  E L  A  IF + KV+D+V
Sbjct: 249 ICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGE-LRSAETIFNQMKVRDIV 307

Query: 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
            W+S++  + Q+     A+ ++++M    + P+ +TL+++ S             +H ++
Sbjct: 308 SWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFV 367

Query: 360 M-KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEA 418
             +     D+++GNA+++MY+K G I S+ ++F  +  +D +SW +LI+GY  +G   EA
Sbjct: 368 TRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEA 427

Query: 419 LQLFLEMQ-ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYV 477
           + ++  M+  SG  P+  T ++IL+A +  G +K+       ++K   +   I    C V
Sbjct: 428 IDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKN-FLYFDIFVSTCLV 486

Query: 478 DLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGR-LEVAEMLAHQLIEA-EPEN 535
           D+ GK GK+ DA  +   +P + S    ++++S   +HG  L+  ++      E  +P++
Sbjct: 487 DMYGKCGKLADALSLFYEVPHQSSVS-WNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDH 545

Query: 536 AANYTLLSMVCSESG 550
               +LLS  CS SG
Sbjct: 546 ITFVSLLS-ACSHSG 559


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  350 bits (899), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 206/627 (32%), Positives = 334/627 (53%), Gaps = 59/627 (9%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           F E  L LY++ +   G   +    P V+KAC    + +  G  +H     SG + +  +
Sbjct: 106 FLEDVLQLYRR-MQRLGWRPDHYTFPFVLKACGEIPSFR-CGASVHAVVFASGFEWNVFV 163

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYR---DTISWNSIINCFTQNGFYVRSLEMFREMYL 122
            N L+SMY +    E+A Q+FDEM  R   D +SWNSI+  + Q G  +R+++MF  M  
Sbjct: 164 GNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTE 223

Query: 123 -CGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
             G    A  L  ++  C+ +G    G+Q+H   +  G FE  VFV  A++D+Y+KC   
Sbjct: 224 DLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFE-DVFVGNAVVDMYAKCGMM 282

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGI------------------------- 216
             A +VFE+M +++ VSW AM++G      +D  +                         
Sbjct: 283 EEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGY 342

Query: 217 ----------DLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDH 266
                     D+FR M+  G +P  VTL  +L  CA    L +GK  H +A     + D 
Sbjct: 343 AQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDE 402

Query: 267 HLSA-------ALMHMYCECTEALHPARIIFERTKVKD--VVIWSSIIRGYSQSGDLSEA 317
           +          AL+ MY +C ++   AR +F+    KD  VV W+ +I G +Q G+ +EA
Sbjct: 403 NDPGDDLMVINALIDMYSKC-KSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEA 461

Query: 318 MKLFSRMRLER--IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS---IGN 372
           ++LFS+M      + PN+ T+   L +C R   L  G  +H Y+++    F+ +   + N
Sbjct: 462 LELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRN--RFESAMLFVAN 519

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
            L++MYSK G + ++  +F+ M  R+ VSWT+L++GYG HG GEEALQ+F EMQ+ G+ P
Sbjct: 520 CLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVP 579

Query: 433 DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKV 492
           D +T + +L AC+H+G+V +    FN + K+  +    EHYAC VDLL ++G++++A ++
Sbjct: 580 DGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMEL 639

Query: 493 VSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNW 552
           +  MPMKP+  +  +L+SACR++  +E+ E  A+QL+E E  N  +YTLLS + + +  W
Sbjct: 640 IRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCW 699

Query: 553 LGAEEVWRVMRAKGLSKSYGFSRIENE 579
                +  +M+  G+ K  G S ++  
Sbjct: 700 KDVARIRYLMKNTGIKKRPGCSWVQGR 726



 Score =  234 bits (597), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 164/554 (29%), Positives = 266/554 (48%), Gaps = 59/554 (10%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEM-PYRDTI-SWNSIINCFTQN 107
           +H   L  G   DP     +ISMY  F+ P  A  +   + P   T+  WN +I      
Sbjct: 48  IHQQLLVQGLPHDPT---HIISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHL 104

Query: 108 GFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFV 167
           GF    L+++R M   G+         ++  C +I     G  +HA+V   G FE +VFV
Sbjct: 105 GFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASG-FEWNVFV 163

Query: 168 STALLDLYSKCHHWLIALRVFEQMVIR---NEVSWTAMISGCIDSQNYDTGIDLFRAMQR 224
              L+ +Y +C  W  A +VF++M  R   + VSW ++++  +   +    + +F  M  
Sbjct: 164 GNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTE 223

Query: 225 E-GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEAL 283
           + G++P  V+L  VL ACA +     GK +HGYA   G   D  +  A++ MY +C   +
Sbjct: 224 DLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCG-MM 282

Query: 284 HPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI-------------- 329
             A  +FER KVKDVV W++++ GYSQ G   +A+ LF ++R E+I              
Sbjct: 283 EEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGY 342

Query: 330 ---------------------EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF-- 366
                                EPN VTL+++LS C     L HG   HC+ +K  LN   
Sbjct: 343 AQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDE 402

Query: 367 -----DVSIGNALMNMYSKCGSITSSHQIFNEMAARD--FVSWTTLISGYGFHGYGEEAL 419
                D+ + NAL++MYSKC S  ++  +F+ +  +D   V+WT LI G   HG   EAL
Sbjct: 403 NDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEAL 462

Query: 420 QLFLEM--QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYV 477
           +LF +M   ++ V P+A T+   L AC   G ++    +   V++ +  +  +    C +
Sbjct: 463 ELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLI 522

Query: 478 DLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE-PENA 536
           D+  KSG + DA +VV     + +    +SL++   +HGR E A  + +++ +     + 
Sbjct: 523 DMYSKSGDV-DAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDG 581

Query: 537 ANYTLLSMVCSESG 550
             + ++   CS SG
Sbjct: 582 VTFVVVLYACSHSG 595



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 133/274 (48%), Gaps = 7/274 (2%)

Query: 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHC 357
           V  W+ +IR     G L + ++L+ RM+     P+  T   +L +C        G  VH 
Sbjct: 91  VFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHA 150

Query: 358 YIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR---DFVSWTTLISGYGFHGY 414
            +  +G  ++V +GN L++MY +CG+  ++ Q+F+EM  R   D VSW ++++ Y   G 
Sbjct: 151 VVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGD 210

Query: 415 GEEALQLFLEMQES-GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY 473
              A+++F  M E  G+ PDA++++ +L AC   G     + +    ++           
Sbjct: 211 SIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGN 270

Query: 474 ACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEP 533
           A  VD+  K G +E+A KV   M +K      +++V+     GR + A  L  ++ E + 
Sbjct: 271 AV-VDMYAKCGMMEEANKVFERMKVKDVVS-WNAMVTGYSQIGRFDDALGLFEKIREEKI 328

Query: 534 E-NAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566
           E N   ++ +    ++ G    A +V+R MR  G
Sbjct: 329 ELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCG 362


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 177/532 (33%), Positives = 309/532 (58%), Gaps = 7/532 (1%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           Q+H   + SG   +  +SNSL++ Y        A Q+F   PY++ +SW  +I+   +N 
Sbjct: 42  QIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVVSWTILISGLAKND 101

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
            +V ++++FREM +  F   A  ++ ++   + +G + + + +H    V G FE +VFV 
Sbjct: 102 CFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCF-WVRGGFEGNVFVE 160

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
           TAL+D+YSK     +A ++FE M  RN V+W A++SG  D    +  IDLF  M+R+G+ 
Sbjct: 161 TALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLL 220

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYC--ECTEALHPA 286
               T+  ++ A   +  L+ G  IHG+    G++ D H+  ALM +Y    C +  H  
Sbjct: 221 VDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHR- 279

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM-RLERIEPNSVTLLAILSSCTR 345
             +F    VKDV  W+ ++ G+S       A+K F++M  ++ ++ +S+ L+ ILSSC+ 
Sbjct: 280 --VFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGILSSCSH 337

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
              L  G  VH   +K     ++ +G+A+++MY+ CG++  + + F  M  +D V W  +
Sbjct: 338 SGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAM 397

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           I+G G +GYG +A+ LFL+M+ SG++PD  T +++L AC+HAG+V E   +F +++K   
Sbjct: 398 IAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSH 457

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
           +   ++HYAC +D+LG++G+++ A   ++ MP +P   + S+L+ ACRIHG +++   ++
Sbjct: 458 VIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEIS 517

Query: 526 HQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            ++ E EP +A  Y LLS + + +GNW G +     +R+K + K  GFS IE
Sbjct: 518 QKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRMKKDPGFSSIE 569



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 138/262 (52%), Gaps = 12/262 (4%)

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
           +L+DL+  + IH      G   +  LS +LM+ Y  C   L  A+ IF  T  K+VV W+
Sbjct: 33  KLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCG-LLADAKQIFHHTPYKNVVSWT 91

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
            +I G +++    EA+ +F  M +   +PN+VT+ ++L +      +     VHC+ ++ 
Sbjct: 92  ILISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRG 151

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
           G   +V +  AL++MYSK G +  + Q+F  M+ R+ V+W  ++SGY  HG+ EEA+ LF
Sbjct: 152 GFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLF 211

Query: 423 LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK-----EKKIALAIEHYACYV 477
             M+  G+  D  T+++++ A    G ++    +   +++     +K I  A+      +
Sbjct: 212 NLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTAL------M 265

Query: 478 DLLGKSGKIEDACKVVSTMPMK 499
           D+      ++DA +V S M +K
Sbjct: 266 DIYVSHNCVDDAHRVFSEMSVK 287



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 121/238 (50%), Gaps = 4/238 (1%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           F E+ + L+   +   GL  +   + S+I A       Q  G  +H   +++G + D  I
Sbjct: 203 FSEEAIDLFNL-MRRKGLLVDFYTIMSLIPASLSVGCLQ-VGTGIHGFIIRTGYENDKHI 260

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY-LCG 124
             +L+ +Y   +  + A+++F EM  +D  +W  ++  F+    + R+++ F +M  +  
Sbjct: 261 KTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQN 320

Query: 125 FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
             L +  L GI+S CS  G L+ GR++HAL I    F  ++FV +A++D+Y+ C +   A
Sbjct: 321 LKLDSIALMGILSSCSHSGALQQGRRVHALAI-KTCFANNIFVGSAVIDMYANCGNLEDA 379

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
            R F  M  ++ V W AMI+G   +      IDLF  M+  G+ P   T   VL AC+
Sbjct: 380 KRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACS 437



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/149 (22%), Positives = 70/149 (46%), Gaps = 1/149 (0%)

Query: 3   SKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDAD 62
           S   +++ +  + + L    L  ++  L  ++ +C+++   Q  G ++H  A+K+    +
Sbjct: 301 SGRHWDRAIKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQ-GRRVHALAIKTCFANN 359

Query: 63  PVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL 122
             + +++I MYA     E A + F  M  +D + WN++I     NG+   ++++F +M  
Sbjct: 360 IFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKG 419

Query: 123 CGFVLKAELLAGIISLCSQIGELELGRQI 151
            G          ++  CS  G +  G QI
Sbjct: 420 SGLDPDESTFVSVLYACSHAGMVYEGLQI 448


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 180/531 (33%), Positives = 305/531 (57%), Gaps = 2/531 (0%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G ++H   + +   A+      +++MYAK  + + AY++FD MP RD +SWN+II  F+Q
Sbjct: 166 GKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQ 225

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           NGF  ++LE+   M   G    +  L  ++   + +G L +G+ IH   I  G F   V 
Sbjct: 226 NGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAG-FAKLVN 284

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           +STAL D+YSKC     A  +F+ M  +  VSW +M+ G + +   +  I +F  M  EG
Sbjct: 285 ISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEG 344

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           + PT VT+   L ACA+L DL  GK +H +        D  +  +L+ MY +C + +  A
Sbjct: 345 IDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKC-KRVDIA 403

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
             IF     +  V W+++I GY+Q+G +SEA+  FS M+   ++P+S T+++++ +    
Sbjct: 404 SDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAEL 463

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
           S   H   +H  I+++ L+ ++ +  AL++MYSKCG+I  + ++F+ ++ R  ++W  +I
Sbjct: 464 SVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMI 523

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
            GYG HG G  AL LF +M++  VEP+ IT L+++SAC+H+GLV E    F ++ ++  +
Sbjct: 524 DGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGL 583

Query: 467 ALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAH 526
             +++HY   VDLLG++G+I++A   +  MP+ P   +  +++ AC+IH  +EV E  A 
Sbjct: 584 EPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNIEVGEKAAK 643

Query: 527 QLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +L E  P+    + LL+ + + +  W    EV + M  KGL K+ G S +E
Sbjct: 644 KLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVE 694



 Score =  218 bits (556), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 151/547 (27%), Positives = 278/547 (50%), Gaps = 22/547 (4%)

Query: 11  LHLYKQELH-PSGLYSNTAILPSVIKAC-AYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
            H   +  H PS +Y + A +  +++ C +  + HQ   L      +K+G   + +    
Sbjct: 34  FHTLSERAHIPSHVYKHPAAV--LLELCTSMKELHQIIPL-----VIKNGLYNEHLFQTK 86

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           L+S+++K+     A ++F+ +  +    +++++  + +N     +L     M        
Sbjct: 87  LVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPV 146

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
                 ++ +C    +L+ G++IH  +I + SF  +VF  T ++++Y+KC     A ++F
Sbjct: 147 VYNFTYLLKVCGDNADLKRGKEIHGQLITN-SFAANVFAMTGVVNMYAKCRQIDDAYKMF 205

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
           ++M  R+ VSW  +I+G   +      ++L   MQ EG +P  +TL  VL A A++  L 
Sbjct: 206 DRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLM 265

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
            GK+IHGYA   GF    ++S AL  MY +C  ++  AR+IF+    K VV W+S++ GY
Sbjct: 266 VGKSIHGYAIRAGFAKLVNISTALADMYSKCG-SVETARLIFDGMDQKTVVSWNSMMDGY 324

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
            Q+G+  +A+ +F +M  E I+P  VT++  L +C     L  G  VH ++ +  L  D+
Sbjct: 325 VQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDI 384

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
           S+ N+L++MYSKC  +  +  IFN +  R  VSW  +I GY  +G   EAL  F EM+  
Sbjct: 385 SVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSL 444

Query: 429 GVEPDAITVLAILSACNHAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLLGKSGK 485
           G++PD+ T+++++ A     + + A+ +   +++   +K I +        VD+  K G 
Sbjct: 445 GMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVT----TALVDMYSKCGA 500

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLS 543
           I  A K+   +  +      ++++     HG    A  L  ++ +   EP +    +++S
Sbjct: 501 IHMARKLFDMISDR-HVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVIS 559

Query: 544 MVCSESG 550
             CS SG
Sbjct: 560 -ACSHSG 565


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 194/576 (33%), Positives = 318/576 (55%), Gaps = 10/576 (1%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           YE+ + LY + L   G+  N    P V+KAC+ A      G ++HC   +   +++  +S
Sbjct: 100 YEEAIDLYYKML-GYGITPNRFTFPFVLKACS-ALKEASEGREIHCDIKRLRLESNVYVS 157

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT-QNGFYVRSLEMFREMYLCGF 125
            +L+  YAK    + A ++FD+M  RD ++WNS+I+ F+   G Y     +  +M     
Sbjct: 158 TALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQ-NDV 216

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
              +  + G++   +Q+  L  G++IH   +  G F   V V T +LD+Y KC     A 
Sbjct: 217 SPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRG-FVGDVVVGTGILDVYGKCQCIDYAR 275

Query: 186 RVFEQM-VIRNEVSWTAMISGCIDSQNYDTGIDLF---RAMQREGVKPTRVTLTIVLLAC 241
           R+F+ M +++NEV+W+AM+   +        ++LF     ++ + +  + VTL  V+  C
Sbjct: 276 RIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVC 335

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A L DL  G  +H YA   GF  D  +   L+ MY +C   ++ A   F    ++D V +
Sbjct: 336 ANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCG-IINGAMRFFNEMDLRDAVSF 394

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           ++II GY Q+G+  E +++F  M+L  I P   TL ++L +C   + L +G   HCY + 
Sbjct: 395 TAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAII 454

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
            G   D  I NAL++MY+KCG I ++ ++F+ M  R  VSW T+I  YG HG G EAL L
Sbjct: 455 CGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLL 514

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
           F  MQ  G++PD +T + ++SAC+H+GLV E +  FN + ++  I   +EHYAC VDLL 
Sbjct: 515 FDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLS 574

Query: 482 KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTL 541
           ++G  ++    +  MP++P  R+  +L+SACR++  +E+ E ++ ++ +  PE+  N+ L
Sbjct: 575 RAGLFKEVHSFIEKMPLEPDVRVWGALLSACRVYKNVELGEGVSKKIQKLGPESTGNFVL 634

Query: 542 LSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           LS + S  G W  A +V    + +G  KS G S IE
Sbjct: 635 LSNMYSAVGRWDDAAQVRFTQKEQGFEKSPGCSWIE 670



 Score =  241 bits (614), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 173/521 (33%), Positives = 272/521 (52%), Gaps = 24/521 (4%)

Query: 43  HQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYR--DTISWNSI 100
           HQH    LH T   + ++ D V    L+ +Y   S+ + A  +FD+MP+R  + + WN +
Sbjct: 32  HQHLLKCLHRTHETNLTNFD-VPFEKLVDLYIACSELKIARHVFDKMPHRPKNVVLWNLL 90

Query: 101 INCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGS 160
           I  +  NG Y  +++++ +M   G          ++  CS + E   GR+IH   I    
Sbjct: 91  IRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSALKEASEGREIHC-DIKRLR 149

Query: 161 FELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISG-CIDSQNYDTGIDLF 219
            E +V+VSTAL+D Y+KC     A  VF++M  R+ V+W +MISG  +   +YD    L 
Sbjct: 150 LESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLL 209

Query: 220 RAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCEC 279
             MQ + V P   T+  VL A A++  LR+GK IHG+    GF  D  +   ++ +Y +C
Sbjct: 210 VQMQND-VSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKC 268

Query: 280 TEALHPARIIFERTK-VKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRL---ERIEPNSVT 335
            + +  AR IF+    VK+ V WS+++  Y     + EA++LF ++ +   + I  ++VT
Sbjct: 269 -QCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVT 327

Query: 336 LLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA 395
           L  ++  C   + LS G  +HCY +K+G   D+ +GN L++MY+KCG I  + + FNEM 
Sbjct: 328 LATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMD 387

Query: 396 ARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH-AGL----V 450
            RD VS+T +ISGY  +G  EE L++FLEMQ SG+ P+  T+ ++L AC H AGL     
Sbjct: 388 LRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSC 447

Query: 451 KEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVS 510
                +      +  I  A+      +D+  K GKI+ A KV   M  K      ++++ 
Sbjct: 448 SHCYAIICGFTADTMICNAL------IDMYAKCGKIDTARKVFDRM-HKRGIVSWNTMII 500

Query: 511 ACRIHG-RLEVAEMLAHQLIEAEPENAANYTLLSMVCSESG 550
           A  IHG  LE   +  +   E    +   +  L   CS SG
Sbjct: 501 AYGIHGIGLEALLLFDNMQSEGLKPDDVTFICLISACSHSG 541



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 152/298 (51%), Gaps = 22/298 (7%)

Query: 230 TRVTL---TIVLLACAELRDLRNGKAIHGYAYCC----------GFDFDHHLSAALMHMY 276
           TR++L   T++L +C + + L  GK IH +   C           FD        L+ +Y
Sbjct: 5   TRLSLEYCTVLLESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFE---KLVDLY 61

Query: 277 CECTEALHPARIIFERT--KVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSV 334
             C+E L  AR +F++   + K+VV+W+ +IR Y+ +G   EA+ L+ +M    I PN  
Sbjct: 62  IACSE-LKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRF 120

Query: 335 TLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEM 394
           T   +L +C+     S G  +HC I +  L  +V +  AL++ Y+KCG +  + ++F++M
Sbjct: 121 TFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKM 180

Query: 395 AARDFVSWTTLISGYGFH-GYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEA 453
             RD V+W ++ISG+  H G  +E  +L ++MQ   V P++ T++ +L A      ++  
Sbjct: 181 HKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQND-VSPNSSTIVGVLPAVAQVNSLRHG 239

Query: 454 ETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSA 511
           + +    ++   +   +      +D+ GK   I+ A ++   M +  +    S++V A
Sbjct: 240 KEIHGFCVRRGFVGDVVVGTG-ILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGA 296


>gi|359483391|ref|XP_003632946.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Vitis vinifera]
          Length = 732

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 181/528 (34%), Positives = 306/528 (57%), Gaps = 2/528 (0%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           LH   ++ G  +D  ++NS++++Y K  + E A  LF+ M  RD ISWNS+++ + Q G 
Sbjct: 168 LHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGN 227

Query: 110 YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVST 169
               L++   M   G     +    ++S  +   +L +G+ +H  ++  G  E    + T
Sbjct: 228 IREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAG-LEQDSHIET 286

Query: 170 ALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKP 229
           +L+ +Y KC +   A R+FE M+ ++ +SWTAMISG + +   D  + +FR M +  V P
Sbjct: 287 SLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMP 346

Query: 230 TRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARII 289
           +  T+  VL ACAEL     G ++HGY        D     +L+ MY +C   L  +  +
Sbjct: 347 STATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGH-LEQSCSV 405

Query: 290 FERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFL 349
           F+R   +D+V W++I+ G++Q+G L +A+ LF+ MR  R  P+S+T++++L +C     L
Sbjct: 406 FDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGAL 465

Query: 350 SHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGY 409
             G  +H ++ K+ L   + I  AL++MYSKCG + S+ + F+ M  +D VSW+++I+GY
Sbjct: 466 HQGKWIHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGY 525

Query: 410 GFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA 469
           G HG GE AL+++ +   +G++P+ +  L+ILSAC+H GLV +  + F+++ K+  I   
Sbjct: 526 GSHGKGETALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTKDFGIEPR 585

Query: 470 IEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLI 529
           +EH AC VDLL ++G++E+A      M  KPS  +L  L+ ACR  G +E+ +++A +++
Sbjct: 586 LEHRACIVDLLSRAGRVEEAYSFYKRMFPKPSMDVLGILLDACRTTGNVELGDIVAREIV 645

Query: 530 EAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
             +P NA NY  L+   +    W G  EVW  M++  L K  G+S IE
Sbjct: 646 ILKPANAGNYVQLAHSYASMKRWDGVGEVWTQMKSLHLKKLPGWSFIE 693



 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 158/523 (30%), Positives = 272/523 (52%), Gaps = 11/523 (2%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEM 89
            PS++KAC       H GL  H   +  G  +D  I+ SLI+ Y+KF   +SA ++FD M
Sbjct: 51  FPSLVKACTSLDLFSH-GLSFHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTM 109

Query: 90  PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGR 149
             R+ + W ++I C+T+ G +  +  M+  M   G    +  + G++S   ++  L+   
Sbjct: 110 DDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQC-- 167

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
            +HA VI  G F   V ++ ++L++Y KC     A  +FE M  R+ +SW +++SG    
Sbjct: 168 -LHACVIQYG-FGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQL 225

Query: 210 QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS 269
            N    + L   M+ +G++P + T   ++ A A    L  GK +HG+    G + D H+ 
Sbjct: 226 GNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIE 285

Query: 270 AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
            +L+ MY +C   ++ A  IFE    KDV+ W+++I G  Q+     A+ +F RM   R+
Sbjct: 286 TSLIGMYLKCGN-VNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRV 344

Query: 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
            P++ T+ ++L++C        G  VH YI++  +  D+   N+L+ MY+KCG +  S  
Sbjct: 345 MPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCS 404

Query: 390 IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL 449
           +F+ M+ RD VSW  ++SG+  +G+  +AL LF EM+++   PD+ITV+++L AC   G 
Sbjct: 405 VFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGA 464

Query: 450 VKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLV 509
           + + + + N V K   +   I      VD+  K G +  A K    MP +      SS++
Sbjct: 465 LHQGKWIHNFVTKS-CLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVS-WSSII 522

Query: 510 SACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLSMVCSESG 550
           +    HG+ E A  +    +    +P +    ++LS  CS +G
Sbjct: 523 AGYGSHGKGETALRMYSDFLHTGIQPNHVIYLSILS-ACSHNG 564



 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 137/466 (29%), Positives = 240/466 (51%), Gaps = 13/466 (2%)

Query: 94  TISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHA 153
           T S+N+IIN  +  G +   L  +  M        A     ++  C+ +     G   H 
Sbjct: 13  TKSYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQ 72

Query: 154 LVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYD 213
            VIVDG +    +++T+L++ YSK  H   A +VF+ M  RN V WT MI     +  +D
Sbjct: 73  RVIVDG-YSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHD 131

Query: 214 TGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALM 273
               ++  M+R+G++P+ VT+  +L    EL  L   + +H      GF  D  L+ +++
Sbjct: 132 VAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHL---QCLHACVIQYGFGSDVALANSML 188

Query: 274 HMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNS 333
           ++YC+C   +  A+ +FE    +DV+ W+S++ GY+Q G++ E ++L  RM+ + IEP+ 
Sbjct: 189 NVYCKCGR-VEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQ 247

Query: 334 VTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNE 393
            T  +++S+   QS L  G  VH +I++AGL  D  I  +L+ MY KCG++ S+ +IF  
Sbjct: 248 QTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEG 307

Query: 394 MAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEA 453
           M  +D +SWT +ISG   +   + A+ +F  M +S V P   T+ ++L+AC   G     
Sbjct: 308 MMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLG 367

Query: 454 ETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACR 513
            ++   ++++ +I L I      V +  K G +E +C V   M  +      +++VS   
Sbjct: 368 TSVHGYILRQ-RIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVS-WNAIVSGHA 425

Query: 514 IHGRLEVAEMLAHQLIEA--EPENAANYTLLSMVCS----ESGNWL 553
            +G L  A +L +++ +A   P++    +LL    S      G W+
Sbjct: 426 QNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWI 471



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 104/379 (27%), Positives = 188/379 (49%), Gaps = 4/379 (1%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
            +   G+  +     S++ A A  Q+    G  +H   L++G + D  I  SLI MY K 
Sbjct: 237 RMKTDGIEPDQQTFGSLVSAAAM-QSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKC 295

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
               SA+++F+ M ++D ISW ++I+   QN     ++ +FR M     +     +A ++
Sbjct: 296 GNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVL 355

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
           + C+++G   LG  +H  ++     +L +    +L+ +Y+KC H   +  VF++M  R+ 
Sbjct: 356 AACAELGSFPLGTSVHGYILRQ-RIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDI 414

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           VSW A++SG   + +    + LF  M++   +P  +T+  +L ACA +  L  GK IH +
Sbjct: 415 VSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNF 474

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
                      +  AL+ MY +C + L  A+  F+R   +D+V WSSII GY   G    
Sbjct: 475 VTKSCLGPCILIDTALVDMYSKCGD-LGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGET 533

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG-VHCYIMKAGLNFDVSIGNALM 375
           A++++S      I+PN V  L+ILS+C+    +  GL   H      G+   +     ++
Sbjct: 534 ALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTKDFGIEPRLEHRACIV 593

Query: 376 NMYSKCGSITSSHQIFNEM 394
           ++ S+ G +  ++  +  M
Sbjct: 594 DLLSRAGRVEEAYSFYKRM 612


>gi|225423551|ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial [Vitis vinifera]
 gi|147818711|emb|CAN65040.1| hypothetical protein VITISV_009460 [Vitis vinifera]
          Length = 700

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 191/577 (33%), Positives = 317/577 (54%), Gaps = 12/577 (2%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           Y + +  Y   L       +  +   V+KAC+  +     G +LHC  +K GS  D  + 
Sbjct: 118 YSEIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRETDE-GRKLHCQIVKVGS-PDSFVL 175

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
             L+ MYAK  + E + ++FDE+  R+ + W S+I  + QN      L +F  M      
Sbjct: 176 TGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLVE 235

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
                L  +++ C+++G L  G+ +H  VI  G F+L+ F+ T LLDLY KC     A  
Sbjct: 236 GNQYTLGSLVTACTKLGALHQGKWVHGYVIKSG-FDLNSFLVTPLLDLYFKCGDIRDAFS 294

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VF+++   + VSWTAMI G          + LF   + + + P  VT + VL ACA+   
Sbjct: 295 VFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGS 354

Query: 247 LRNGKAIHGYAYCCGFDF---DHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
           L  G+++H    C G      D     AL+ MY +C   +  AR +FE    KDV+ W+S
Sbjct: 355 LNMGRSVH----CLGIKLGSEDATFENALVDMYAKC-HMIGDARYVFETVFDKDVIAWNS 409

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           II GY+Q+G   EA++LF +MR + + P+++TL+++LS+C        G  +H Y +KAG
Sbjct: 410 IISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAG 469

Query: 364 L-NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
           L +  V +G AL+N Y+KCG   S+  IF+EM  ++ ++W+ +I GYG  G    +L+LF
Sbjct: 470 LLSGSVYVGTALLNFYAKCGDAESARVIFDEMGEKNTITWSAMIGGYGIQGDCSRSLELF 529

Query: 423 LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGK 482
            +M +  +EP+ +    ILSAC+H+G++ E    FN + +      +++HYAC VDLL +
Sbjct: 530 GDMLKEKLEPNEVIFTTILSACSHSGMLGEGWRYFNTMCQVYNFVPSMKHYACMVDLLAR 589

Query: 483 SGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLL 542
           +G++E+A   +  +P++P   +L + +  CR+H R ++ E+   +++E  P+ A  Y L+
Sbjct: 590 AGRLEEALDFIEKIPIQPDVSLLGAFLHGCRLHSRFDLGEVAVRRMLELHPDKACYYVLM 649

Query: 543 SMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIENE 579
           S + +  G W  A +V  +M+ +GL+K  G+S ++ E
Sbjct: 650 SNLYASEGRWSQANQVMELMKQRGLAKLPGWSLVDIE 686



 Score =  251 bits (641), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 159/514 (30%), Positives = 267/514 (51%), Gaps = 10/514 (1%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           ++H   +  G   D +    L+S+Y  F   E A  +FD +   D  SW  +I  +  N 
Sbjct: 57  KIHALLVVHGLSEDLLCETKLVSLYGSFGHVECARLMFDRIRNPDLYSWKVMIRWYFLND 116

Query: 109 FYVRSLEMFR-EMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFV 167
            Y   ++ +   +  C       + + ++  CS++ E + GR++H  ++  GS +   FV
Sbjct: 117 SYSEIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRETDEGRKLHCQIVKVGSPD--SFV 174

Query: 168 STALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV 227
            T L+D+Y+KC     + RVF++++ RN V WT+MI G + +     G+ LF  M+   V
Sbjct: 175 LTGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLV 234

Query: 228 KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPAR 287
           +  + TL  ++ AC +L  L  GK +HGY    GFD +  L   L+ +Y +C + +  A 
Sbjct: 235 EGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGD-IRDAF 293

Query: 288 IIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQS 347
            +F+     D+V W+++I GY+Q G   EA+KLF+  R + + PN+VT  ++LS+C +  
Sbjct: 294 SVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTG 353

Query: 348 FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLIS 407
            L+ G  VHC  +K G + D +  NAL++MY+KC  I  +  +F  +  +D ++W ++IS
Sbjct: 354 SLNMGRSVHCLGIKLG-SEDATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIIS 412

Query: 408 GYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIA 467
           GY  +GY  EAL+LF +M+   V PDAIT++++LSAC   G  +   +L    +K   ++
Sbjct: 413 GYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAGLLS 472

Query: 468 LAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA-EMLAH 526
            ++      ++   K G  E A  +   M  K +T   S+++    I G    + E+   
Sbjct: 473 GSVYVGTALLNFYAKCGDAESARVIFDEMGEK-NTITWSAMIGGYGIQGDCSRSLELFGD 531

Query: 527 QLIEAEPENAANYTLLSMVCSESGNWLGAEEVWR 560
            L E    N   +T +   CS SG  LG  E WR
Sbjct: 532 MLKEKLEPNEVIFTTILSACSHSG-MLG--EGWR 562


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 186/577 (32%), Positives = 319/577 (55%), Gaps = 4/577 (0%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           +  + F ++ L L+ +++    +  +   + S++ ACA      + G QLH   +K G  
Sbjct: 289 LAQRGFSDRALQLF-EKMQLDCMKPDCVTVASLLSACASVGA-GYKGKQLHSYVIKMGMS 346

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
           +D +I  SL+ +Y K    E+A++ F      + + WN ++  + Q G    S  +F +M
Sbjct: 347 SDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQM 406

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
            + G +        I+  C+ +G L+LG QIH  VI  G F+ +V+V + L+D+Y+K   
Sbjct: 407 QIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSG-FQFNVYVCSVLIDMYAKHGE 465

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
              A  + +++   + VSWTAMI+G      +   + LF+ M+ +G++   +  +  + A
Sbjct: 466 LDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISA 525

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
           CA ++ L  G+ IH  +Y  G+  D  +  AL+ +Y  C  A   A + FE+   KD + 
Sbjct: 526 CAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRA-QDAYLAFEKIDAKDNIS 584

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           W+++I G++QSG   EA+++FS+M    +E N  T  + +S+    + +  G  +H  ++
Sbjct: 585 WNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMI 644

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
           K G + +    N L+ +YSKCGSI  + + F EM  ++ VSW  +I+GY  HGYG EA+ 
Sbjct: 645 KTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVS 704

Query: 421 LFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLL 480
           LF EM++ G+ P+ +T + +LSAC+H GLV E  + F ++ KE  +    EHY C VDLL
Sbjct: 705 LFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYVCVVDLL 764

Query: 481 GKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYT 540
           G++  +  A + +  MP++P   I  +L+SAC +H  +E+ E  A  L+E EPE++A Y 
Sbjct: 765 GRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPEDSATYV 824

Query: 541 LLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           LLS + + SG W   +   ++M+ +G+ K  G S IE
Sbjct: 825 LLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIE 861



 Score =  245 bits (625), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 151/483 (31%), Positives = 253/483 (52%), Gaps = 4/483 (0%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           ++H S +     +  SV+ AC   +  +  G QLH   +K G  ++  + N+L+++Y+++
Sbjct: 203 QMHKSAVIPTPYVFSSVLSACTKIELFK-LGEQLHGFIVKWGLSSETFVCNALVTLYSRW 261

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
               +A Q+F +M  RD IS+NS+I+   Q GF  R+L++F +M L         +A ++
Sbjct: 262 GNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLL 321

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
           S C+ +G    G+Q+H+ VI  G     + +  +LLDLY KC     A   F      N 
Sbjct: 322 SACASVGAGYKGKQLHSYVIKMG-MSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENV 380

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           V W  M+       N      +F  MQ EG+ P + T   +L  C  L  L  G+ IH  
Sbjct: 381 VLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQ 440

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
               GF F+ ++ + L+ MY +  E L  AR I +R + +DVV W+++I GY+Q    +E
Sbjct: 441 VIKSGFQFNVYVCSVLIDMYAKHGE-LDTARGILQRLREEDVVSWTAMIAGYTQHDLFAE 499

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
           A+KLF  M  + I  +++   + +S+C     L+ G  +H     +G + D+SIGNAL++
Sbjct: 500 ALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVS 559

Query: 377 MYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAIT 436
           +Y++CG    ++  F ++ A+D +SW  LISG+   G+ EEALQ+F +M ++GVE +  T
Sbjct: 560 LYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFT 619

Query: 437 VLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
             + +SA  +   +K+ + + + +M +       E     + L  K G IEDA +    M
Sbjct: 620 FGSAVSATANTANIKQGKQI-HAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEM 678

Query: 497 PMK 499
           P K
Sbjct: 679 PEK 681



 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 152/556 (27%), Positives = 280/556 (50%), Gaps = 17/556 (3%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           +++K    Q L L+   +    +  + +   SV++AC+  +       Q+H   +  G  
Sbjct: 86  LLAKKLASQVLGLFSLMI-TENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFG 144

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
           + P++ N LI +Y+K    + A  +F+ +  +D++SW ++I+  +QNG    ++ +F +M
Sbjct: 145 SSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQM 204

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
           +    +    + + ++S C++I   +LG Q+H  ++  G      FV  AL+ LYS+  +
Sbjct: 205 HKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWG-LSSETFVCNALVTLYSRWGN 263

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
            + A ++F +M  R+ +S+ ++ISG       D  + LF  MQ + +KP  VT+  +L A
Sbjct: 264 LIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSA 323

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
           CA +     GK +H Y    G   D  +  +L+ +Y +C + +  A   F  T+ ++VV+
Sbjct: 324 CASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFD-IETAHEYFLTTETENVVL 382

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           W+ ++  Y Q G+LSE+  +F +M++E + PN  T  +IL +CT    L  G  +H  ++
Sbjct: 383 WNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVI 442

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
           K+G  F+V + + L++MY+K G + ++  I   +   D VSWT +I+GY  H    EAL+
Sbjct: 443 KSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALK 502

Query: 421 LFLEMQESGVEPDAITVLAILSACN-----HAGLVKEAETLFNNVMKEKKIALAIEHYAC 475
           LF EM+  G+  D I   + +SAC      + G    A++  +   ++  I  A+     
Sbjct: 503 LFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNAL----- 557

Query: 476 YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPEN 535
            V L  + G+ +DA      +  K +    ++L+S     G  E A  +  Q+ +A  E 
Sbjct: 558 -VSLYARCGRAQDAYLAFEKIDAKDNIS-WNALISGFAQSGHCEEALQVFSQMNQAGVE- 614

Query: 536 AANYTLLSMVCSESGN 551
            AN        S + N
Sbjct: 615 -ANLFTFGSAVSATAN 629



 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 133/451 (29%), Positives = 225/451 (49%), Gaps = 8/451 (1%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           +LH    KSG D + V+ + LI +Y    + ++A +LFD++P  +   WN +I+      
Sbjct: 31  KLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSNVSFWNKVISGLLAKK 90

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ-IGELELGRQIHALVIVDGSFELSVFV 167
              + L +F  M            A ++  CS      ++  QIHA +I  G F  S  V
Sbjct: 91  LASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHG-FGSSPLV 149

Query: 168 STALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV 227
              L+DLYSK  H  +A  VFE++ +++ VSW AMISG   +   D  I LF  M +  V
Sbjct: 150 CNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAV 209

Query: 228 KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPAR 287
            PT    + VL AC ++   + G+ +HG+    G   +  +  AL+ +Y      L  A 
Sbjct: 210 IPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGN-LIAAE 268

Query: 288 IIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQS 347
            IF +   +D + ++S+I G +Q G    A++LF +M+L+ ++P+ VT+ ++LS+C    
Sbjct: 269 QIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVG 328

Query: 348 FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLIS 407
               G  +H Y++K G++ D+ I  +L+++Y KC  I ++H+ F      + V W  ++ 
Sbjct: 329 AGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLV 388

Query: 408 GYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIA 467
            YG  G   E+  +FL+MQ  G+ P+  T  +IL  C   G +   E +   V+K     
Sbjct: 389 AYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKS---G 445

Query: 468 LAIEHYACYV--DLLGKSGKIEDACKVVSTM 496
                Y C V  D+  K G+++ A  ++  +
Sbjct: 446 FQFNVYVCSVLIDMYAKHGELDTARGILQRL 476



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 100/325 (30%), Positives = 171/325 (52%), Gaps = 3/325 (0%)

Query: 139 CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
           C   G L   +++HA +   G F+    + + L+D+Y        A+++F+ +   N   
Sbjct: 20  CFNSGSLLDAKKLHARIFKSG-FDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSNVSF 78

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR-DLRNGKAIHGYA 257
           W  +ISG +  +     + LF  M  E V P   T   VL AC+  +   +  + IH   
Sbjct: 79  WNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKI 138

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
              GF     +   L+ +Y +    +  A+++FER  +KD V W ++I G SQ+G   EA
Sbjct: 139 IHHGFGSSPLVCNPLIDLYSK-NGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEA 197

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
           + LF +M    + P      ++LS+CT+      G  +H +I+K GL+ +  + NAL+ +
Sbjct: 198 ILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTL 257

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           YS+ G++ ++ QIF++M  RD +S+ +LISG    G+ + ALQLF +MQ   ++PD +TV
Sbjct: 258 YSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTV 317

Query: 438 LAILSACNHAGLVKEAETLFNNVMK 462
            ++LSAC   G   + + L + V+K
Sbjct: 318 ASLLSACASVGAGYKGKQLHSYVIK 342



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 151/340 (44%), Gaps = 10/340 (2%)

Query: 222 MQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTE 281
           M+  G++    T   +   C     L + K +H   +  GFD +  L + L+ +Y    E
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 282 ALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILS 341
             +  + +F+     +V  W+ +I G       S+ + LFS M  E + P+  T  ++L 
Sbjct: 61  VDNAIK-LFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLR 119

Query: 342 SCT-RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFV 400
           +C+  ++       +H  I+  G      + N L+++YSK G +  +  +F  +  +D V
Sbjct: 120 ACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSV 179

Query: 401 SWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNV 460
           SW  +ISG   +G  +EA+ LF +M +S V P      ++LSAC    L K  E L   +
Sbjct: 180 SWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFI 239

Query: 461 MKEKKIALAIEHYAC--YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRL 518
           +   K  L+ E + C   V L  + G +  A ++ S M  +      +SL+S     G  
Sbjct: 240 V---KWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRIS-YNSLISGLAQRGFS 295

Query: 519 EVAEMLAH--QLIEAEPENAANYTLLSMVCSESGNWLGAE 556
           + A  L    QL   +P+     +LLS   S    + G +
Sbjct: 296 DRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQ 335


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 174/531 (32%), Positives = 314/531 (59%), Gaps = 2/531 (0%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G ++HC  + +G  ++      +++MYAK    E AY++FD MP RD + WN+II+ + Q
Sbjct: 194 GKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQ 253

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           NGF   +LE+   M   G    +  +  I+   + +G L +GR IH   +  G FE  V 
Sbjct: 254 NGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAG-FESFVN 312

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           VSTAL+D+YSKC     A  +F++M  +  VSW +MI G + + +    +++F+ M  E 
Sbjct: 313 VSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQ 372

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           V+ T VT+   L ACA+L D+  G+ +H          D  +  +L+ MY +C + +  A
Sbjct: 373 VEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKC-KRVDIA 431

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
             IFE  + K +V W+++I GY+Q+G ++EA+  F +M+L+ I+P+S T+++++ +    
Sbjct: 432 AEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAEL 491

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
           S L     +H  +++  L+ +V +  AL++MY+KCG++ ++ ++F+ M  R   +W  +I
Sbjct: 492 SVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMI 551

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
            GYG HG G+ AL+LF +M++  ++P+ +T L +LSAC+H+GLV+E    F ++ K+  +
Sbjct: 552 DGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGL 611

Query: 467 ALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAH 526
             A++HY   VDLLG++ ++ +A   +  MP++P+  +  +++ ACRIH  +E+ E  A+
Sbjct: 612 EPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGACRIHKNVELGEKAAN 671

Query: 527 QLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           ++ + +P++   + LL+ + + +  W     V   M  KG+ K+ G+S +E
Sbjct: 672 RIFDLDPDDGGYHVLLANIYATASMWDKVARVRTTMEKKGIQKTPGWSVVE 722



 Score =  229 bits (584), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 156/549 (28%), Positives = 284/549 (51%), Gaps = 39/549 (7%)

Query: 12  HLYKQELHPSGLYSNTAILPSVIKAC-AYAQTHQHFGLQLHCTALKSGSDADPVISNSLI 70
           H+YK   HPS +         +++ C +  + HQ   L      +K+G  ++ +    L+
Sbjct: 74  HVYK---HPSAI---------LLELCTSMKELHQFIPL-----IIKNGLYSEHLFQTKLV 116

Query: 71  SMYAKFSKPESAYQLFDEMPYRDTIS--WNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           S++ KF     A ++F   P  D I   +++++  + +N     ++  F  M   G    
Sbjct: 117 SLFCKFGSLHEAARVFQ--PIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPV 174

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
                 ++ +C    +L  G++IH  +IV+G F  +VF  T ++++Y+KC     A ++F
Sbjct: 175 VYNFTYLLKVCGDNADLRKGKEIHCQLIVNG-FASNVFAMTGVVNMYAKCRLVEEAYKMF 233

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
           ++M  R+ V W  +ISG   +    T ++L   MQ EG +P  +T+  +L A A++  LR
Sbjct: 234 DRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLR 293

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
            G++IHGY+   GF+   ++S AL+ MY +C  ++  AR+IF+R   K VV W+S+I GY
Sbjct: 294 IGRSIHGYSMRAGFESFVNVSTALVDMYSKCG-SVGTARLIFDRMTGKTVVSWNSMIDGY 352

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
            Q+GD   AM++F +M  E++E  +VT++  L +C     +  G  VH  + +  L  DV
Sbjct: 353 VQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDV 412

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
           S+ N+L++MYSKC  +  + +IF  +  +  VSW  +I GY  +G   EA+  F +MQ  
Sbjct: 413 SVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQ 472

Query: 429 GVEPDAITVLAILSACNHAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLLGKSGK 485
            ++PD+ T+++++ A     ++ +A+ +   V++   +K + +A       VD+  K G 
Sbjct: 473 NIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVA----TALVDMYAKCGA 528

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHG----RLEVAEMLAHQLIEAEPENAANYTL 541
           +  A K+   M  +  T   ++++     HG     LE+ E +  ++I+    N   +  
Sbjct: 529 VHTARKLFDMMDERHVT-TWNAMIDGYGTHGLGKAALELFEKMKKEVIKP---NEVTFLC 584

Query: 542 LSMVCSESG 550
           +   CS SG
Sbjct: 585 VLSACSHSG 593


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 190/571 (33%), Positives = 320/571 (56%), Gaps = 6/571 (1%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E  L ++ +E+  SGL  +   + S++ ACA     Q  G QLH    K+G  +D ++  
Sbjct: 226 EHALEIF-EEMQFSGLSPDCVTISSLLAACASLGDLQK-GTQLHSYLFKAGISSDYIMEG 283

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           SL+ +Y K    E+A  +F+     + + WN ++  F Q     +S E+F +M   G   
Sbjct: 284 SLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRP 343

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL-IALR 186
                  I+  C+   E++LG QIH+L +  G FE  ++VS  L+D+YSK + WL  A R
Sbjct: 344 NQFTYPCILRTCTCTREIDLGEQIHSLSVKTG-FESDMYVSGVLIDMYSK-YGWLEKARR 401

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           V E +  ++ VSWT+MI+G +  +     +  F+ MQ+ G+ P  + L   +  CA +  
Sbjct: 402 VLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINA 461

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           +R G  IH   Y  G+  D  +  AL+++Y  C   +  A   FE  + KD + W+ ++ 
Sbjct: 462 MRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGR-IREAFSSFEEIEHKDEITWNGLVS 520

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           G++QSG   EA+K+F RM    ++ N  T ++ LS+    + +  G  +H  ++K G +F
Sbjct: 521 GFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSF 580

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           +  +GNAL+++Y KCGS   +   F+EM+ R+ VSW T+I+    HG G EAL LF +M+
Sbjct: 581 ETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMK 640

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
           + G++P+ +T + +L+AC+H GLV+E  + F ++  E  I    +HYAC +D+ G++G++
Sbjct: 641 KEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQL 700

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546
           + A K +  MP+     +  +L+SAC++H  +EV E  A  L+E EP ++A+Y LLS   
Sbjct: 701 DRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAY 760

Query: 547 SESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           + +  W   ++V ++MR +G+ K  G S IE
Sbjct: 761 AVTEKWANRDQVRKMMRDRGVRKEPGRSWIE 791



 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 162/544 (29%), Positives = 277/544 (50%), Gaps = 7/544 (1%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E+ L LY+Q +H +G+     +L SV+ +C  A+     G  +H    K G  ++  + N
Sbjct: 125 EEALGLYRQ-MHRAGVVPTPYVLSSVLSSCTKAELFAQ-GRLIHAQGYKHGFCSEIFVGN 182

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           ++I++Y +      A ++F +MP+RDT+++N++I+   Q G    +LE+F EM   G   
Sbjct: 183 AVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSP 242

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
               ++ +++ C+ +G+L+ G Q+H+ +   G       +  +LLDLY KC     AL +
Sbjct: 243 DCVTISSLLAACASLGDLQKGTQLHSYLFKAG-ISSDYIMEGSLLDLYVKCGDVETALVI 301

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F      N V W  M+       +     +LF  MQ  G++P + T   +L  C   R++
Sbjct: 302 FNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREI 361

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
             G+ IH  +   GF+ D ++S  L+ MY +    L  AR + E  K KDVV W+S+I G
Sbjct: 362 DLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYG-WLEKARRVLEMLKEKDVVSWTSMIAG 420

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
           Y Q     +A+  F  M+   I P+++ L + +S C   + +  GL +H  I  +G + D
Sbjct: 421 YVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGD 480

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
           VSI NAL+N+Y++CG I  +   F E+  +D ++W  L+SG+   G  EEAL++F+ M +
Sbjct: 481 VSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQ 540

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487
           SGV+ +  T ++ LSA  +   +K+ + +   V+K    +   E     + L GK G  E
Sbjct: 541 SGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGH-SFETEVGNALISLYGKCGSFE 599

Query: 488 DACKVVSTMPMKPSTRILSSLVSACRIHGR-LEVAEMLAHQLIEAEPENAANYTLLSMVC 546
           DA    S M  +      ++++++C  HGR LE  ++      E    N   +  +   C
Sbjct: 600 DAKMEFSEMSERNEVS-WNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAAC 658

Query: 547 SESG 550
           S  G
Sbjct: 659 SHVG 662



 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 125/411 (30%), Positives = 223/411 (54%), Gaps = 2/411 (0%)

Query: 34  IKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRD 93
           ++AC           ++H  A+  G     ++ N LI +Y+K      A ++F+E+  RD
Sbjct: 48  LRACRGNGRRWQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARD 107

Query: 94  TISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHA 153
            +SW ++++ + QNG    +L ++R+M+  G V    +L+ ++S C++      GR IHA
Sbjct: 108 NVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHA 167

Query: 154 LVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYD 213
                G F   +FV  A++ LY +C  + +A RVF  M  R+ V++  +ISG     + +
Sbjct: 168 QGYKHG-FCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGE 226

Query: 214 TGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALM 273
             +++F  MQ  G+ P  VT++ +L ACA L DL+ G  +H Y +  G   D+ +  +L+
Sbjct: 227 HALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLL 286

Query: 274 HMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNS 333
            +Y +C + +  A +IF  +   +VV+W+ ++  + Q  DL+++ +LF +M+   I PN 
Sbjct: 287 DLYVKCGD-VETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQ 345

Query: 334 VTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNE 393
            T   IL +CT    +  G  +H   +K G   D+ +   L++MYSK G +  + ++   
Sbjct: 346 FTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEM 405

Query: 394 MAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
           +  +D VSWT++I+GY  H   ++AL  F EMQ+ G+ PD I + + +S C
Sbjct: 406 LKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGC 456



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 101/352 (28%), Positives = 177/352 (50%), Gaps = 7/352 (1%)

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
           +IHA  +  G  +  + V   L+DLYSK    L A RVFE++  R+ VSW AM+SG   +
Sbjct: 63  EIHAKAVTRGLGKYRI-VGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQN 121

Query: 210 QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS 269
              +  + L+R M R GV PT   L+ VL +C +      G+ IH   Y  GF  +  + 
Sbjct: 122 GLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVG 181

Query: 270 AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
            A++ +Y  C  +   A  +F     +D V ++++I G++Q G    A+++F  M+   +
Sbjct: 182 NAVITLYLRCG-SFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGL 240

Query: 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
            P+ VT+ ++L++C     L  G  +H Y+ KAG++ D  +  +L+++Y KCG + ++  
Sbjct: 241 SPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALV 300

Query: 390 IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL 449
           IFN     + V W  ++  +G      ++ +LF +MQ +G+ P+  T   IL  C     
Sbjct: 301 IFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTRE 360

Query: 450 VKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDACKVVSTMPMK 499
           +   E + +  +   K     + Y     +D+  K G +E A +V+  +  K
Sbjct: 361 IDLGEQIHSLSV---KTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEK 409



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 157/308 (50%), Gaps = 19/308 (6%)

Query: 191 MVIRNEVSWTAMISGCIDSQNYDTGIDLF--RAMQREGVKPTRVTLTIVLLACAELRDLR 248
           M  R   S    ++G +  ++    + LF  +A Q  G+ P       +  ACA LR  R
Sbjct: 1   MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHGGLGP-------LDFACA-LRACR 52

Query: 249 -NGK------AIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
            NG+       IH  A   G      +   L+ +Y +    L PAR +FE    +D V W
Sbjct: 53  GNGRRWQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVL-PARRVFEELSARDNVSW 111

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
            +++ GY+Q+G   EA+ L+ +M    + P    L ++LSSCT+    + G  +H    K
Sbjct: 112 VAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYK 171

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
            G   ++ +GNA++ +Y +CGS   + ++F +M  RD V++ TLISG+   G+GE AL++
Sbjct: 172 HGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEI 231

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
           F EMQ SG+ PD +T+ ++L+AC   G +++   L + + K   I+         +DL  
Sbjct: 232 FEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFK-AGISSDYIMEGSLLDLYV 290

Query: 482 KSGKIEDA 489
           K G +E A
Sbjct: 291 KCGDVETA 298


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 190/571 (33%), Positives = 320/571 (56%), Gaps = 6/571 (1%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E  L ++ +E+  SGL  +   + S++ ACA     Q  G QLH    K+G  +D ++  
Sbjct: 226 EHALEIF-EEMQFSGLSPDCVTISSLLAACASLGDLQK-GTQLHSYLFKAGISSDYIMEG 283

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           SL+ +Y K    E+A  +F+     + + WN ++  F Q     +S E+F +M   G   
Sbjct: 284 SLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRP 343

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL-IALR 186
                  I+  C+   E++LG QIH+L +  G FE  ++VS  L+D+YSK + WL  A R
Sbjct: 344 NQFTYPCILRTCTCTREIDLGEQIHSLSVKTG-FESDMYVSGVLIDMYSK-YGWLEKARR 401

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           V E +  ++ VSWT+MI+G +  +     +  F+ MQ+ G+ P  + L   +  CA +  
Sbjct: 402 VLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINA 461

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           +R G  IH   Y  G+  D  +  AL+++Y  C   +  A   FE  + KD + W+ ++ 
Sbjct: 462 MRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGR-IREAFSSFEEIEHKDEITWNGLVS 520

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           G++QSG   EA+K+F RM    ++ N  T ++ LS+    + +  G  +H  ++K G +F
Sbjct: 521 GFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSF 580

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           +  +GNAL+++Y KCGS   +   F+EM+ R+ VSW T+I+    HG G EAL LF +M+
Sbjct: 581 ETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMK 640

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
           + G++P+ +T + +L+AC+H GLV+E  + F ++  E  I    +HYAC +D+ G++G++
Sbjct: 641 KEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQL 700

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546
           + A K +  MP+     +  +L+SAC++H  +EV E  A  L+E EP ++A+Y LLS   
Sbjct: 701 DRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAY 760

Query: 547 SESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           + +  W   ++V ++MR +G+ K  G S IE
Sbjct: 761 AVTEKWANRDQVRKMMRDRGVRKEPGRSWIE 791



 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 162/544 (29%), Positives = 277/544 (50%), Gaps = 7/544 (1%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E+ L LY+Q +H +G+     +L SV+ +C  A+     G  +H    K G  ++  + N
Sbjct: 125 EEALGLYRQ-MHRAGVVPTPYVLSSVLSSCTKAELFAQ-GRLIHAQGYKHGFCSEIFVGN 182

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           ++I++Y +      A ++F +MP+RDT+++N++I+   Q G    +LE+F EM   G   
Sbjct: 183 AVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSP 242

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
               ++ +++ C+ +G+L+ G Q+H+ +   G       +  +LLDLY KC     AL +
Sbjct: 243 DCVTISSLLAACASLGDLQKGTQLHSYLFKAG-ISSDYIMEGSLLDLYVKCGDVETALVI 301

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F      N V W  M+       +     +LF  MQ  G++P + T   +L  C   R++
Sbjct: 302 FNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREI 361

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
             G+ IH  +   GF+ D ++S  L+ MY +    L  AR + E  K KDVV W+S+I G
Sbjct: 362 DLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYG-WLEKARRVLEMLKEKDVVSWTSMIAG 420

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
           Y Q     +A+  F  M+   I P+++ L + +S C   + +  GL +H  I  +G + D
Sbjct: 421 YVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGD 480

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
           VSI NAL+N+Y++CG I  +   F E+  +D ++W  L+SG+   G  EEAL++F+ M +
Sbjct: 481 VSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQ 540

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487
           SGV+ +  T ++ LSA  +   +K+ + +   V+K    +   E     + L GK G  E
Sbjct: 541 SGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGH-SFETEVGNALISLYGKCGSFE 599

Query: 488 DACKVVSTMPMKPSTRILSSLVSACRIHGR-LEVAEMLAHQLIEAEPENAANYTLLSMVC 546
           DA    S M  +      ++++++C  HGR LE  ++      E    N   +  +   C
Sbjct: 600 DAKMEFSEMSERNEVS-WNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAAC 658

Query: 547 SESG 550
           S  G
Sbjct: 659 SHVG 662



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 125/411 (30%), Positives = 223/411 (54%), Gaps = 2/411 (0%)

Query: 34  IKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRD 93
           ++AC           ++H  A+  G     ++ N LI +Y+K      A ++F+E+  RD
Sbjct: 48  LRACRGNGRRWQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARD 107

Query: 94  TISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHA 153
            +SW ++++ + QNG    +L ++R+M+  G V    +L+ ++S C++      GR IHA
Sbjct: 108 NVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHA 167

Query: 154 LVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYD 213
                G F   +FV  A++ LY +C  + +A RVF  M  R+ V++  +ISG     + +
Sbjct: 168 QGYKHG-FCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGE 226

Query: 214 TGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALM 273
             +++F  MQ  G+ P  VT++ +L ACA L DL+ G  +H Y +  G   D+ +  +L+
Sbjct: 227 HALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLL 286

Query: 274 HMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNS 333
            +Y +C + +  A +IF  +   +VV+W+ ++  + Q  DL+++ +LF +M+   I PN 
Sbjct: 287 DLYVKCGD-VETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQ 345

Query: 334 VTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNE 393
            T   IL +CT    +  G  +H   +K G   D+ +   L++MYSK G +  + ++   
Sbjct: 346 FTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEM 405

Query: 394 MAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
           +  +D VSWT++I+GY  H   ++AL  F EMQ+ G+ PD I + + +S C
Sbjct: 406 LKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGC 456



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 101/352 (28%), Positives = 177/352 (50%), Gaps = 7/352 (1%)

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
           +IHA  +  G  +  + V   L+DLYSK    L A RVFE++  R+ VSW AM+SG   +
Sbjct: 63  EIHAKAVTRGLGKYRI-VGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQN 121

Query: 210 QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS 269
              +  + L+R M R GV PT   L+ VL +C +      G+ IH   Y  GF  +  + 
Sbjct: 122 GLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVG 181

Query: 270 AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
            A++ +Y  C  +   A  +F     +D V ++++I G++Q G    A+++F  M+   +
Sbjct: 182 NAVITLYLRCG-SFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGL 240

Query: 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
            P+ VT+ ++L++C     L  G  +H Y+ KAG++ D  +  +L+++Y KCG + ++  
Sbjct: 241 SPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALV 300

Query: 390 IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL 449
           IFN     + V W  ++  +G      ++ +LF +MQ +G+ P+  T   IL  C     
Sbjct: 301 IFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTRE 360

Query: 450 VKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDACKVVSTMPMK 499
           +   E + +  +   K     + Y     +D+  K G +E A +V+  +  K
Sbjct: 361 IDLGEQIHSLSV---KTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEK 409



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 157/308 (50%), Gaps = 19/308 (6%)

Query: 191 MVIRNEVSWTAMISGCIDSQNYDTGIDLF--RAMQREGVKPTRVTLTIVLLACAELRDLR 248
           M  R   S    ++G +  ++    + LF  +A Q  G+ P       +  ACA LR  R
Sbjct: 1   MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHGGLGP-------LDFACA-LRACR 52

Query: 249 -NGK------AIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
            NG+       IH  A   G      +   L+ +Y +    L PAR +FE    +D V W
Sbjct: 53  GNGRRWQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVL-PARRVFEELSARDNVSW 111

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
            +++ GY+Q+G   EA+ L+ +M    + P    L ++LSSCT+    + G  +H    K
Sbjct: 112 VAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYK 171

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
            G   ++ +GNA++ +Y +CGS   + ++F +M  RD V++ TLISG+   G+GE AL++
Sbjct: 172 HGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEI 231

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
           F EMQ SG+ PD +T+ ++L+AC   G +++   L + + K   I+         +DL  
Sbjct: 232 FEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFK-AGISSDYIMEGSLLDLYV 290

Query: 482 KSGKIEDA 489
           K G +E A
Sbjct: 291 KCGDVETA 298


>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 939

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 187/575 (32%), Positives = 318/575 (55%), Gaps = 6/575 (1%)

Query: 3   SKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDAD 62
           S  F+E  L +Y  +   +G+  +   + SV+ AC      +  G+ +H    K G   D
Sbjct: 199 SNGFWEDALDMY-HKFRMTGMVPDCFTMSSVLLACGSLMAVKE-GVAVHGVIEKIGIAGD 256

Query: 63  PVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL 122
            +I N L+SMY KF +   A ++F +M  +D+++WN++I  + Q G +  S+++F +M +
Sbjct: 257 VIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDM-I 315

Query: 123 CGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL 182
            GFV     +   I  C Q G+L++G+ +H  +I  G FE        L+D+Y+KC   L
Sbjct: 316 DGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSG-FECDTVACNILIDMYAKCGDLL 374

Query: 183 IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
            A  VF+    ++ V+W ++I+G   S  Y  G++ F+ M+ E  KP  VT  ++L   +
Sbjct: 375 AAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMER-KPDSVTFVLLLSIFS 433

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
           +L D+  G+ IH      GF+ +  +  +L+ +Y +C E +     +F      D++ W+
Sbjct: 434 QLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGE-MDDLLKVFSYMSAHDIISWN 492

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
           ++I       D +   ++ + MR E + P+  T+L IL  C+  +    G  +H YI K+
Sbjct: 493 TVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKS 552

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
           G   +V IGNAL+ MYSKCGS+ +  ++F  M  +D V+WT LIS +G +G G++AL+ F
Sbjct: 553 GFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAF 612

Query: 423 LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGK 482
            +M+ SGV PD++  +A + AC+H+G+VKE    F+ +  +  +   +EHYAC VDLL +
Sbjct: 613 QDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLAR 672

Query: 483 SGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLL 542
           SG +  A + + +MPMKP   +  +L+SACR  G   +A+ ++ +++E   ++   Y L+
Sbjct: 673 SGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVLV 732

Query: 543 SMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           S + +  G W   + V   M+ KGL K  G S IE
Sbjct: 733 SNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIE 767



 Score =  262 bits (669), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 164/543 (30%), Positives = 286/543 (52%), Gaps = 18/543 (3%)

Query: 14  YKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMY 73
           Y  E+    L  +    PSVI +CA     +  G  +H  A++ G ++D  I N+LI MY
Sbjct: 108 YYTEMREKKLQPDAFTFPSVINSCARILDLE-LGCIVHEHAMEMGFESDLYIGNALIDMY 166

Query: 74  AKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLA 133
           ++F   ++A  +F+EM  RD++SWNS+I+ +  NGF+  +L+M+ +  + G V     ++
Sbjct: 167 SRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMS 226

Query: 134 GIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI 193
            ++  C  +  ++ G  +H  VI        V +   LL +Y K      A RVF +M +
Sbjct: 227 SVLLACGSLMAVKEGVAVHG-VIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAV 285

Query: 194 RNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAI 253
           ++ V+W  MI G      ++  + LF  M  +G  P  +++T  + AC +  DL+ GK +
Sbjct: 286 KDSVTWNTMICGYAQLGRHEASVKLFMDMI-DGFVPDMLSITSTIRACGQSGDLQVGKFV 344

Query: 254 HGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGD 313
           H Y    GF+ D      L+ MY +C + L  A+ +F+ TK KD V W+S+I GY+QSG 
Sbjct: 345 HKYLIGSGFECDTVACNILIDMYAKCGDLL-AAQEVFDTTKCKDSVTWNSLINGYTQSGY 403

Query: 314 LSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNA 373
             E ++ F  M++ER +P+SVT + +LS  ++ + ++ G G+HC ++K G   ++ IGN+
Sbjct: 404 YKEGLESFKMMKMER-KPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNS 462

Query: 374 LMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPD 433
           L+++Y+KCG +    ++F+ M+A D +SW T+I+            Q+  EM+  G+ PD
Sbjct: 463 LLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPD 522

Query: 434 AITVLAILSACNHAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLLGKSGKIEDAC 490
             TVL IL  C+   + ++ + +   + K   E  + +        +++  K G +E+  
Sbjct: 523 EATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESNVPIG----NALIEMYSKCGSLENCI 578

Query: 491 KVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE---PENAANYTLLSMVCS 547
           KV   M  K      ++L+SA  ++G  + A + A Q +E     P++ A +      CS
Sbjct: 579 KVFKYMKEK-DVVTWTALISAFGMYGEGKKA-LKAFQDMELSGVLPDSVA-FIAFIFACS 635

Query: 548 ESG 550
            SG
Sbjct: 636 HSG 638



 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 142/487 (29%), Positives = 251/487 (51%), Gaps = 17/487 (3%)

Query: 14  YKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMY 73
           +     PS  +  +++L ++  A    Q        +H   + SG     + S  LIS Y
Sbjct: 10  FNNTPEPSQEFLRSSLLKTLSSAKNTPQLRT-----VHSLIITSGLSLSVIFSGKLISKY 64

Query: 74  AKFSKPESAYQLFDEM-PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELL 132
           A+   P S+  +F  + P  +   WNSII   T NG + ++L  + EM        A   
Sbjct: 65  AQVKDPISSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTF 124

Query: 133 AGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV 192
             +I+ C++I +LELG  +H   +  G FE  +++  AL+D+YS+      A  VFE+M 
Sbjct: 125 PSVINSCARILDLELGCIVHEHAMEMG-FESDLYIGNALIDMYSRFVDLDNARYVFEEMS 183

Query: 193 IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKA 252
            R+ VSW ++ISG   +  ++  +D++   +  G+ P   T++ VLLAC  L  ++ G A
Sbjct: 184 NRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVA 243

Query: 253 IHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSG 312
           +HG     G   D  +   L+ MY +  E L  AR +F +  VKD V W+++I GY+Q G
Sbjct: 244 VHGVIEKIGIAGDVIIGNGLLSMYFK-FERLREARRVFSKMAVKDSVTWNTMICGYAQLG 302

Query: 313 DLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN 372
               ++KLF  M ++   P+ +++ + + +C +   L  G  VH Y++ +G   D    N
Sbjct: 303 RHEASVKLFMDM-IDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACN 361

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
            L++MY+KCG + ++ ++F+    +D V+W +LI+GY   GY +E L+ F +M +   +P
Sbjct: 362 ILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESF-KMMKMERKP 420

Query: 433 DAITVLAILSACNHAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLLGKSGKIEDA 489
           D++T + +LS  +    + +   +  +V+K   E ++ +        +D+  K G+++D 
Sbjct: 421 DSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIG----NSLLDVYAKCGEMDDL 476

Query: 490 CKVVSTM 496
            KV S M
Sbjct: 477 LKVFSYM 483



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 110/400 (27%), Positives = 202/400 (50%), Gaps = 11/400 (2%)

Query: 149 RQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS-WTAMISGCI 207
           R +H+L+I  G   LSV  S  L+  Y++    + ++ VF  +   N V  W ++I    
Sbjct: 39  RTVHSLIITSG-LSLSVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALT 97

Query: 208 DSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
            +  +   +  +  M+ + ++P   T   V+ +CA + DL  G  +H +A   GF+ D +
Sbjct: 98  HNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLY 157

Query: 268 LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
           +  AL+ MY    + L  AR +FE    +D V W+S+I GY  +G   +A+ ++ + R+ 
Sbjct: 158 IGNALIDMYSRFVD-LDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMT 216

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
            + P+  T+ ++L +C     +  G+ VH  I K G+  DV IGN L++MY K   +  +
Sbjct: 217 GMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREA 276

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHA 447
            ++F++MA +D V+W T+I GY   G  E +++LF++M + G  PD +++ + + AC  +
Sbjct: 277 RRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMID-GFVPDMLSITSTIRACGQS 335

Query: 448 GLVKEAETLFNNVMKEKKIALAIEHYAC--YVDLLGKSGKIEDACKVVSTMPMKPSTRIL 505
           G ++  + +   ++         +  AC   +D+  K G +  A +V  T   K S    
Sbjct: 336 GDLQVGKFVHKYLIGS---GFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSV-TW 391

Query: 506 SSLVSACRIHGRL-EVAEMLAHQLIEAEPENAANYTLLSM 544
           +SL++     G   E  E      +E +P++     LLS+
Sbjct: 392 NSLINGYTQSGYYKEGLESFKMMKMERKPDSVTFVLLLSI 431



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 157/301 (52%), Gaps = 2/301 (0%)

Query: 251 KAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQ 310
           + +H      G       S  L+  Y +  + +    +    +   +V +W+SIIR  + 
Sbjct: 39  RTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTH 98

Query: 311 SGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSI 370
           +G  ++A+  ++ MR ++++P++ T  ++++SC R   L  G  VH + M+ G   D+ I
Sbjct: 99  NGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYI 158

Query: 371 GNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV 430
           GNAL++MYS+   + ++  +F EM+ RD VSW +LISGY  +G+ E+AL ++ + + +G+
Sbjct: 159 GNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGM 218

Query: 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDAC 490
            PD  T+ ++L AC     VKE   + + V+++  IA  +      + +  K  ++ +A 
Sbjct: 219 VPDCFTMSSVLLACGSLMAVKEGVAV-HGVIEKIGIAGDVIIGNGLLSMYFKFERLREAR 277

Query: 491 KVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESG 550
           +V S M +K S    ++++      GR E +  L   +I+    +  + T     C +SG
Sbjct: 278 RVFSKMAVKDSV-TWNTMICGYAQLGRHEASVKLFMDMIDGFVPDMLSITSTIRACGQSG 336

Query: 551 N 551
           +
Sbjct: 337 D 337


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 200/581 (34%), Positives = 317/581 (54%), Gaps = 19/581 (3%)

Query: 11  LHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLI 70
           LHLY++ L    +  N    P  +KAC+    H H G  +H  A+ +G  AD  +S +L+
Sbjct: 110 LHLYRRMLR-HRVAPNNYTFPFALKACSALADH-HCGRAIHRHAIHAGLQADLFVSTALL 167

Query: 71  SMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK-- 128
            MY K +    A  +F  MP RD ++WN+++  +  +G Y  ++     M +    L+  
Sbjct: 168 DMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPN 227

Query: 129 AELLAGIISLCSQIGELELGRQIHALVI---------VDGSFELSVFVSTALLDLYSKCH 179
           A  L  ++ L +Q G L  G  +HA  I                 V + TALLD+Y+KC 
Sbjct: 228 ASTLVALLPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCG 287

Query: 180 HWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV---KPTRVTLTI 236
             L A RVF+ M  RNEV+W+A+I G +          LF+AM  +G+    PT  ++  
Sbjct: 288 SLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT--SIAS 345

Query: 237 VLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK 296
            L ACA L  LR G+ +H      G   D     +L+ MY +    +  A  +F+   VK
Sbjct: 346 ALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAK-AGLIDQAIALFDEMAVK 404

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVH 356
           D V +S+++ GY Q+G   EA  +F +M+   +EP++ T+++++ +C+  + L HG   H
Sbjct: 405 DTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSH 464

Query: 357 CYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGE 416
             ++  GL  + SI NAL++MY+KCG I  S Q+FN M +RD VSW T+I+GYG HG G+
Sbjct: 465 GSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGK 524

Query: 417 EALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACY 476
           EA  LFLEM   G  PD +T + +LSAC+H+GLV E +  F+ +     +   +EHY C 
Sbjct: 525 EATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICM 584

Query: 477 VDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENA 536
           VDLL + G +++A + + +MP++   R+  +L+ ACR++  +++ + ++  + E  PE  
Sbjct: 585 VDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGT 644

Query: 537 ANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            N+ LLS + S +G +  A EV  + + +G  KS G S IE
Sbjct: 645 GNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIE 685



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 107/351 (30%), Positives = 174/351 (49%), Gaps = 23/351 (6%)

Query: 215 GIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMH 274
           G+ L+R M R  V P   T    L AC+ L D   G+AIH +A   G   D  +S AL+ 
Sbjct: 109 GLHLYRRMLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLD 168

Query: 275 MYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK--LFSRMRLERIEPN 332
           MY +C   L  A  IF     +D+V W++++ GY+  G    A+   L  +M++ R+ PN
Sbjct: 169 MYVKCA-CLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPN 227

Query: 333 SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD----------VSIGNALMNMYSKCG 382
           + TL+A+L    +Q  L+ G  VH Y ++A L+ +          V +G AL++MY+KCG
Sbjct: 228 ASTLVALLPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCG 287

Query: 383 SITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG---VEPDAITVLA 439
           S+  + ++F+ M AR+ V+W+ LI G+       +A  LF  M   G   + P +I   +
Sbjct: 288 SLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--S 345

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
            L AC     ++  E L + ++ +  +   +      + +  K+G I+ A  +   M +K
Sbjct: 346 ALRACASLDHLRMGEQL-HALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVK 404

Query: 500 PSTRILSSLVSACRIHGRLEVAEML--AHQLIEAEPENAANYTLLSMVCSE 548
             T   S+LVS    +GR E A ++    Q    EP+ A   +L+   CS 
Sbjct: 405 -DTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIP-ACSH 453



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 109/224 (48%), Gaps = 13/224 (5%)

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEA--MKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
           +F++    DV  ++ +IR YS S   + A  + L+ RM   R+ PN+ T    L +C+  
Sbjct: 79  LFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFALKACSAL 138

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
           +    G  +H + + AGL  D+ +  AL++MY KC  +  +  IF  M ARD V+W  ++
Sbjct: 139 ADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAML 198

Query: 407 SGYGFHGYGEEALQ--LFLEMQESGVEPDAITVLAILSACNHAGLVKEAET--------- 455
           +GY  HG    A+   L ++MQ   + P+A T++A+L      G + +  +         
Sbjct: 199 AGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRIRAC 258

Query: 456 LFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           L +N   + K+   +      +D+  K G +  A +V   MP +
Sbjct: 259 LHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPAR 302


>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
          Length = 853

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 188/562 (33%), Positives = 322/562 (57%), Gaps = 3/562 (0%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           + +  SG   N A L   +  CA        G QLH  A+K G + +  ++N+L++MYAK
Sbjct: 231 RNMRASGCEPNFATLACFLSVCA-TDADLLSGAQLHSLAVKCGLEPEVAVANTLLAMYAK 289

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
               + A++LF+ MP  D ++WN +I+   QNG +V +  +F +M   G    +  L  +
Sbjct: 290 CQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSL 349

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           +   + +  L+ G+++H   IV     + VF+ +AL+D+Y KC    +A  +++     +
Sbjct: 350 LPALTDLNGLKQGKEVHGY-IVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAID 408

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
            V  + MISG + +   +  + +FR +  + +KP  VT+  VL  CA +  L  G+ IHG
Sbjct: 409 VVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQIHG 468

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
           Y     ++   ++ +ALM MY +C   L  +  IF +   KD V W+S+I  +SQ+G   
Sbjct: 469 YVLRNAYERKCYVESALMDMYAKCGR-LDLSHYIFLKMSQKDEVTWNSMISSFSQNGKPQ 527

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           EA+ LF +M +E I+ N++T+ A LS+C     + +G  +H   +K  +  D+   +AL+
Sbjct: 528 EALDLFRQMCMEGIKYNNITISAALSACASLPAIYYGKEIHGVTIKGPIKADIFAESALI 587

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           +MY+KCG++  + ++F  M  ++ VSW ++IS YG HG  +E++ L   MQE G +PD +
Sbjct: 588 DMYAKCGNLELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSLLHGMQEEGYKPDHV 647

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           T LA++SAC HAGLV+E   LF  + K+  IA  +EH+AC VDL  +SGK++ A + ++ 
Sbjct: 648 TFLALISACAHAGLVEEGVQLFQCMTKKYLIAPRMEHFACMVDLYSRSGKLDKAIQFIAD 707

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGA 555
           MP KP   I  +L+ ACR+H  +E+A++ + +L + +P N+  Y L+S + + +G W G 
Sbjct: 708 MPFKPDAGIWGALLHACRVHRNVELADIASQELFKLDPANSGYYVLMSNINAVAGRWDGV 767

Query: 556 EEVWRVMRAKGLSKSYGFSRIE 577
            +V R+M+   + K  G+S ++
Sbjct: 768 SKVRRLMKDNKILKIPGYSWVD 789



 Score =  259 bits (662), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 168/534 (31%), Positives = 281/534 (52%), Gaps = 8/534 (1%)

Query: 19  HPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSK 78
           HP+    +   LP V+K+CA A      G  +H TA   G   D  + ++L+ MYA    
Sbjct: 133 HPAAPSPDAHTLPYVVKSCA-ALGAMSLGRLVHRTARAIGLANDVYVGSALVKMYADAGL 191

Query: 79  PESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISL 138
             +A   FD +P RD + WN +++   + G    ++ +FR M   G       LA  +S+
Sbjct: 192 LGNARDAFDGIPERDCVLWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSV 251

Query: 139 CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
           C+   +L  G Q+H+L +  G  E  V V+  LL +Y+KC     A R+FE M   + V+
Sbjct: 252 CATDADLLSGAQLHSLAVKCG-LEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVT 310

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258
           W  MISGC+ +  +     LF  MQR G +P  +TL  +L A  +L  L+ GK +HGY  
Sbjct: 311 WNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIV 370

Query: 259 CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAM 318
               + D  L +AL+ +Y +C + +  A+ +++  +  DVVI S++I GY  +G   EA+
Sbjct: 371 RNCVNMDVFLVSALVDIYFKCRD-VRMAQNLYDAARAIDVVIGSTMISGYVLNGMSEEAL 429

Query: 319 KLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMY 378
           ++F  +  + I+PN+VT+ ++L  C   + L  G  +H Y+++        + +ALM+MY
Sbjct: 430 QMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLRNAYERKCYVESALMDMY 489

Query: 379 SKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
           +KCG +  SH IF +M+ +D V+W ++IS +  +G  +EAL LF +M   G++ + IT+ 
Sbjct: 490 AKCGRLDLSHYIFLKMSQKDEVTWNSMISSFSQNGKPQEALDLFRQMCMEGIKYNNITIS 549

Query: 439 AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPM 498
           A LSAC     +   + + + V  +  I   I   +  +D+  K G +E A +V   MP 
Sbjct: 550 AALSACASLPAIYYGKEI-HGVTIKGPIKADIFAESALIDMYAKCGNLELALRVFEFMPD 608

Query: 499 KPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLSMVCSESG 550
           K      +S++SA   HG ++ +  L H + E   +P++     L+S  C+ +G
Sbjct: 609 KNEVS-WNSIISAYGAHGLVKESVSLLHGMQEEGYKPDHVTFLALIS-ACAHAG 660



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 146/515 (28%), Positives = 254/515 (49%), Gaps = 29/515 (5%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADP---VISNSLISMYAKFSKPESAYQLF 86
           L +V++ C  A  H   GLQ+H  A+ SG+ +D     +   L+ MY    +   A  +F
Sbjct: 35  LLAVLRGCVSA-PHLPLGLQIHARAVVSGALSDHNHLALHTRLLGMYVLARRFRDAVAVF 93

Query: 87  DEMPY---RDTISWNSIINCFTQNGFYVRSLEMFREMY--LCGFVLKAELLAGIISLCSQ 141
             +P      ++ WN +I  FT  G +  ++  + +M+         A  L  ++  C+ 
Sbjct: 94  SALPRAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAA 153

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
           +G + LGR +H      G     V+V +AL+ +Y+       A   F+ +  R+ V W  
Sbjct: 154 LGAMSLGRLVHRTARAIG-LANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNV 212

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           M+ GCI + + D  + LFR M+  G +P   TL   L  CA   DL +G  +H  A  CG
Sbjct: 213 MMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLHSLAVKCG 272

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
            + +  ++  L+ MY +C + L  A  +FE     D+V W+ +I G  Q+G   EA  LF
Sbjct: 273 LEPEVAVANTLLAMYAKC-QCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLF 331

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
             M+     P+S+TL+++L + T  + L  G  VH YI++  +N DV + +AL+++Y KC
Sbjct: 332 YDMQRSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKC 391

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
             +  +  +++   A D V  +T+ISGY  +G  EEALQ+F  + E  ++P+A+T+ ++L
Sbjct: 392 RDVRMAQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVL 451

Query: 442 SACNHAGLVKEAETLFNNVMK---EKKIALAIEHYACYV-----DLLGKSGKIEDACKVV 493
             C     +   + +   V++   E+K         CYV     D+  K G+++ +  + 
Sbjct: 452 PGCASMAALPLGQQIHGYVLRNAYERK---------CYVESALMDMYAKCGRLDLSHYIF 502

Query: 494 STMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
             M  K      +S++S+   +G+ + A  L  Q+
Sbjct: 503 LKMSQKDEV-TWNSMISSFSQNGKPQEALDLFRQM 536



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 168/345 (48%), Gaps = 8/345 (2%)

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELS--VFVSTALLDLYSKCHHWLI 183
           V  A+ L  ++  C     L LG QIHA  +V G+      + + T LL +Y     +  
Sbjct: 29  VSSADRLLAVLRGCVSAPHLPLGLQIHARAVVSGALSDHNHLALHTRLLGMYVLARRFRD 88

Query: 184 ALRVFEQM---VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRV--TLTIVL 238
           A+ VF  +      + + W  +I G   +  +   +  +  M      P+    TL  V+
Sbjct: 89  AVAVFSALPRAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVV 148

Query: 239 LACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDV 298
            +CA L  +  G+ +H  A   G   D ++ +AL+ MY +    L  AR  F+    +D 
Sbjct: 149 KSCAALGAMSLGRLVHRTARAIGLANDVYVGSALVKMYAD-AGLLGNARDAFDGIPERDC 207

Query: 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCY 358
           V+W+ ++ G  ++GD+  A++LF  MR    EPN  TL   LS C   + L  G  +H  
Sbjct: 208 VLWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLHSL 267

Query: 359 IMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEA 418
            +K GL  +V++ N L+ MY+KC  +  + ++F  M   D V+W  +ISG   +G   EA
Sbjct: 268 AVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEA 327

Query: 419 LQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKE 463
             LF +MQ SG  PD+IT++++L A      +K+ + +   +++ 
Sbjct: 328 FGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRN 372


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 195/532 (36%), Positives = 297/532 (55%), Gaps = 9/532 (1%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQ--LFDEMPYRDTISWNSIINCFTQ 106
           Q+H   L++    DP  ++ +++  A        Y   +F+++P   T + NSII  +T 
Sbjct: 58  QIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTN 117

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
                +++  ++ M L G          +   C  + E   G+Q+H      G F    +
Sbjct: 118 KNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGVLCE---GKQLHCHSTKLG-FASDAY 173

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           +   L+++YS C   + A +VF++MV ++ VSW  MI            I LFR M+   
Sbjct: 174 IQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIAS 233

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP- 285
           VKP  +TL  VL ACA  RDL   K +H Y    G  F   L++ALM +YC+C    +P 
Sbjct: 234 VKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKC--GCYPL 291

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           AR +F +   K++  W+ +I G+ +  D  EA+ LF+ M+L  ++ + VT+ ++L +CT 
Sbjct: 292 ARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTH 351

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
              L  G  +H YI K  +  DV++G AL++MY+KCGSI S+ ++F EM  +D ++WT L
Sbjct: 352 LGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTAL 411

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           I G    G G +AL+LF EMQ S V+PDAIT + +L+AC+HAGLV E    FN++  +  
Sbjct: 412 IVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYG 471

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
           I  +IEHY C VD+LG++G+I +A  ++  MPM P   +L  L+SACRIHG L VAE  A
Sbjct: 472 IQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAA 531

Query: 526 HQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            QLIE +P+N   Y LLS + S   NW  A+++  +M  + + K  G S IE
Sbjct: 532 QQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIE 583



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 116/430 (26%), Positives = 216/430 (50%), Gaps = 12/430 (2%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
            +K+   Q + L+ Q +   GL  +    PS+ K+C         G QLHC + K G  +
Sbjct: 116 TNKNLPRQAI-LFYQLMMLQGLDPDRFTFPSLFKSCGVLCE----GKQLHCHSTKLGFAS 170

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D  I N+L++MY+      SA ++FD+M  +  +SW ++I  + Q      ++++FR M 
Sbjct: 171 DAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRME 230

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
           +         L  +++ C++  +LE  +Q+H  +   G       +++AL+D+Y KC  +
Sbjct: 231 IASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETG-IGFHTVLTSALMDVYCKCGCY 289

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
            +A  +F +M  +N   W  MI+G ++  +Y+  + LF  MQ  GVK  +VT+  +L+AC
Sbjct: 290 PLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIAC 349

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
             L  L  GK +H Y      + D  L  AL+ MY +C  ++  A  +F+    KDV+ W
Sbjct: 350 THLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCG-SIESAMRVFQEMPEKDVMTW 408

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG-VHCYIM 360
           +++I G +  G   +A++LF  M++  ++P+++T + +L++C+    ++ G+   +    
Sbjct: 409 TALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPN 468

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA-ARDFVSWTTLISGYGFHG---YGE 416
           K G+   +     +++M  + G I  +  +   M  A D+     L+S    HG     E
Sbjct: 469 KYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAE 528

Query: 417 EALQLFLEMQ 426
            A Q  +E+ 
Sbjct: 529 RAAQQLIELD 538


>gi|302144099|emb|CBI23204.3| unnamed protein product [Vitis vinifera]
          Length = 907

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 181/528 (34%), Positives = 306/528 (57%), Gaps = 2/528 (0%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           LH   ++ G  +D  ++NS++++Y K  + E A  LF+ M  RD ISWNS+++ + Q G 
Sbjct: 168 LHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGN 227

Query: 110 YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVST 169
               L++   M   G     +    ++S  +   +L +G+ +H  ++  G  E    + T
Sbjct: 228 IREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAG-LEQDSHIET 286

Query: 170 ALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKP 229
           +L+ +Y KC +   A R+FE M+ ++ +SWTAMISG + +   D  + +FR M +  V P
Sbjct: 287 SLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMP 346

Query: 230 TRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARII 289
           +  T+  VL ACAEL     G ++HGY        D     +L+ MY +C   L  +  +
Sbjct: 347 STATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGH-LEQSCSV 405

Query: 290 FERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFL 349
           F+R   +D+V W++I+ G++Q+G L +A+ LF+ MR  R  P+S+T++++L +C     L
Sbjct: 406 FDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGAL 465

Query: 350 SHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGY 409
             G  +H ++ K+ L   + I  AL++MYSKCG + S+ + F+ M  +D VSW+++I+GY
Sbjct: 466 HQGKWIHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGY 525

Query: 410 GFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA 469
           G HG GE AL+++ +   +G++P+ +  L+ILSAC+H GLV +  + F+++ K+  I   
Sbjct: 526 GSHGKGETALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTKDFGIEPR 585

Query: 470 IEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLI 529
           +EH AC VDLL ++G++E+A      M  KPS  +L  L+ ACR  G +E+ +++A +++
Sbjct: 586 LEHRACIVDLLSRAGRVEEAYSFYKRMFPKPSMDVLGILLDACRTTGNVELGDIVAREIV 645

Query: 530 EAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
             +P NA NY  L+   +    W G  EVW  M++  L K  G+S IE
Sbjct: 646 ILKPANAGNYVQLAHSYASMKRWDGVGEVWTQMKSLHLKKLPGWSFIE 693



 Score =  249 bits (635), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 158/523 (30%), Positives = 272/523 (52%), Gaps = 11/523 (2%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEM 89
            PS++KAC       H GL  H   +  G  +D  I+ SLI+ Y+KF   +SA ++FD M
Sbjct: 51  FPSLVKACTSLDLFSH-GLSFHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTM 109

Query: 90  PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGR 149
             R+ + W ++I C+T+ G +  +  M+  M   G    +  + G++S   ++  L+   
Sbjct: 110 DDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQC-- 167

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
            +HA VI  G F   V ++ ++L++Y KC     A  +FE M  R+ +SW +++SG    
Sbjct: 168 -LHACVIQYG-FGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQL 225

Query: 210 QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS 269
            N    + L   M+ +G++P + T   ++ A A    L  GK +HG+    G + D H+ 
Sbjct: 226 GNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIE 285

Query: 270 AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
            +L+ MY +C   ++ A  IFE    KDV+ W+++I G  Q+     A+ +F RM   R+
Sbjct: 286 TSLIGMYLKCGN-VNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRV 344

Query: 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
            P++ T+ ++L++C        G  VH YI++  +  D+   N+L+ MY+KCG +  S  
Sbjct: 345 MPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCS 404

Query: 390 IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL 449
           +F+ M+ RD VSW  ++SG+  +G+  +AL LF EM+++   PD+ITV+++L AC   G 
Sbjct: 405 VFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGA 464

Query: 450 VKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLV 509
           + + + + N V K   +   I      VD+  K G +  A K    MP +      SS++
Sbjct: 465 LHQGKWIHNFVTKS-CLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVS-WSSII 522

Query: 510 SACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLSMVCSESG 550
           +    HG+ E A  +    +    +P +    ++LS  CS +G
Sbjct: 523 AGYGSHGKGETALRMYSDFLHTGIQPNHVIYLSILS-ACSHNG 564



 Score =  215 bits (548), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 137/466 (29%), Positives = 240/466 (51%), Gaps = 13/466 (2%)

Query: 94  TISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHA 153
           T S+N+IIN  +  G +   L  +  M        A     ++  C+ +     G   H 
Sbjct: 13  TKSYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQ 72

Query: 154 LVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYD 213
            VIVDG +    +++T+L++ YSK  H   A +VF+ M  RN V WT MI     +  +D
Sbjct: 73  RVIVDG-YSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHD 131

Query: 214 TGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALM 273
               ++  M+R+G++P+ VT+  +L    EL  L   + +H      GF  D  L+ +++
Sbjct: 132 VAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHL---QCLHACVIQYGFGSDVALANSML 188

Query: 274 HMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNS 333
           ++YC+C   +  A+ +FE    +DV+ W+S++ GY+Q G++ E ++L  RM+ + IEP+ 
Sbjct: 189 NVYCKCGR-VEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQ 247

Query: 334 VTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNE 393
            T  +++S+   QS L  G  VH +I++AGL  D  I  +L+ MY KCG++ S+ +IF  
Sbjct: 248 QTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEG 307

Query: 394 MAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEA 453
           M  +D +SWT +ISG   +   + A+ +F  M +S V P   T+ ++L+AC   G     
Sbjct: 308 MMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLG 367

Query: 454 ETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACR 513
            ++   ++++ +I L I      V +  K G +E +C V   M  +      +++VS   
Sbjct: 368 TSVHGYILRQ-RIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVS-WNAIVSGHA 425

Query: 514 IHGRLEVAEMLAHQLIEA--EPENAANYTLLSMVCS----ESGNWL 553
            +G L  A +L +++ +A   P++    +LL    S      G W+
Sbjct: 426 QNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWI 471



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 105/379 (27%), Positives = 188/379 (49%), Gaps = 4/379 (1%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
            +   G+  +     S++ A A  Q+    G  +H   L++G + D  I  SLI MY K 
Sbjct: 237 RMKTDGIEPDQQTFGSLVSAAAM-QSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKC 295

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
               SA+++F+ M ++D ISW ++I+   QN     ++ +FR M     +     +A ++
Sbjct: 296 GNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVL 355

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
           + C+++G   LG  +H   I+    +L +    +L+ +Y+KC H   +  VF++M  R+ 
Sbjct: 356 AACAELGSFPLGTSVHGY-ILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDI 414

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           VSW A++SG   + +    + LF  M++   +P  +T+  +L ACA +  L  GK IH +
Sbjct: 415 VSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNF 474

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
                      +  AL+ MY +C + L  A+  F+R   +D+V WSSII GY   G    
Sbjct: 475 VTKSCLGPCILIDTALVDMYSKCGD-LGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGET 533

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG-VHCYIMKAGLNFDVSIGNALM 375
           A++++S      I+PN V  L+ILS+C+    +  GL   H      G+   +     ++
Sbjct: 534 ALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTKDFGIEPRLEHRACIV 593

Query: 376 NMYSKCGSITSSHQIFNEM 394
           ++ S+ G +  ++  +  M
Sbjct: 594 DLLSRAGRVEEAYSFYKRM 612


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 187/575 (32%), Positives = 318/575 (55%), Gaps = 6/575 (1%)

Query: 3   SKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDAD 62
           S  F+E  L +Y  +   +G+  +   + SV+ AC      +  G+ +H    K G   D
Sbjct: 199 SNGFWEDALDMY-HKFRMTGMVPDCFTMSSVLLACGSLMAVKE-GVAVHGVIEKIGIAGD 256

Query: 63  PVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL 122
            +I N L+SMY KF +   A ++F +M  +D+++WN++I  + Q G +  S+++F +M +
Sbjct: 257 VIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDM-I 315

Query: 123 CGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL 182
            GFV     +   I  C Q G+L++G+ +H  +I  G FE        L+D+Y+KC   L
Sbjct: 316 DGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSG-FECDTVACNILIDMYAKCGDLL 374

Query: 183 IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
            A  VF+    ++ V+W ++I+G   S  Y  G++ F+ M+ E  KP  VT  ++L   +
Sbjct: 375 AAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMER-KPDSVTFVLLLSIFS 433

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
           +L D+  G+ IH      GF+ +  +  +L+ +Y +C E +     +F      D++ W+
Sbjct: 434 QLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGE-MDDLLKVFSYMSAHDIISWN 492

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
           ++I       D +   ++ + MR E + P+  T+L IL  C+  +    G  +H YI K+
Sbjct: 493 TVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKS 552

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
           G   +V IGNAL+ MYSKCGS+ +  ++F  M  +D V+WT LIS +G +G G++AL+ F
Sbjct: 553 GFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAF 612

Query: 423 LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGK 482
            +M+ SGV PD++  +A + AC+H+G+VKE    F+ +  +  +   +EHYAC VDLL +
Sbjct: 613 QDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLAR 672

Query: 483 SGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLL 542
           SG +  A + + +MPMKP   +  +L+SACR  G   +A+ ++ +++E   ++   Y L+
Sbjct: 673 SGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVLV 732

Query: 543 SMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           S + +  G W   + V   M+ KGL K  G S IE
Sbjct: 733 SNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIE 767



 Score =  262 bits (669), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 164/543 (30%), Positives = 286/543 (52%), Gaps = 18/543 (3%)

Query: 14  YKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMY 73
           Y  E+    L  +    PSVI +CA     +  G  +H  A++ G ++D  I N+LI MY
Sbjct: 108 YYTEMREKKLQPDAFTFPSVINSCARILDLE-LGCIVHEHAMEMGFESDLYIGNALIDMY 166

Query: 74  AKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLA 133
           ++F   ++A  +F+EM  RD++SWNS+I+ +  NGF+  +L+M+ +  + G V     ++
Sbjct: 167 SRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMS 226

Query: 134 GIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI 193
            ++  C  +  ++ G  +H  VI        V +   LL +Y K      A RVF +M +
Sbjct: 227 SVLLACGSLMAVKEGVAVHG-VIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAV 285

Query: 194 RNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAI 253
           ++ V+W  MI G      ++  + LF  M  +G  P  +++T  + AC +  DL+ GK +
Sbjct: 286 KDSVTWNTMICGYAQLGRHEASVKLFMDMI-DGFVPDMLSITSTIRACGQSGDLQVGKFV 344

Query: 254 HGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGD 313
           H Y    GF+ D      L+ MY +C + L  A+ +F+ TK KD V W+S+I GY+QSG 
Sbjct: 345 HKYLIGSGFECDTVACNILIDMYAKCGDLL-AAQEVFDTTKCKDSVTWNSLINGYTQSGY 403

Query: 314 LSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNA 373
             E ++ F  M++ER +P+SVT + +LS  ++ + ++ G G+HC ++K G   ++ IGN+
Sbjct: 404 YKEGLESFKMMKMER-KPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNS 462

Query: 374 LMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPD 433
           L+++Y+KCG +    ++F+ M+A D +SW T+I+            Q+  EM+  G+ PD
Sbjct: 463 LLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPD 522

Query: 434 AITVLAILSACNHAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLLGKSGKIEDAC 490
             TVL IL  C+   + ++ + +   + K   E  + +        +++  K G +E+  
Sbjct: 523 EATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESNVPIG----NALIEMYSKCGSLENCI 578

Query: 491 KVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE---PENAANYTLLSMVCS 547
           KV   M  K      ++L+SA  ++G  + A + A Q +E     P++ A +      CS
Sbjct: 579 KVFKYMKEK-DVVTWTALISAFGMYGEGKKA-LKAFQDMELSGVLPDSVA-FIAFIFACS 635

Query: 548 ESG 550
            SG
Sbjct: 636 HSG 638



 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 142/487 (29%), Positives = 251/487 (51%), Gaps = 17/487 (3%)

Query: 14  YKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMY 73
           +     PS  +  +++L ++  A    Q        +H   + SG     + S  LIS Y
Sbjct: 10  FNNTPEPSQEFLRSSLLKTLSSAKNTPQLRT-----VHSLIITSGLSLSVIFSGKLISKY 64

Query: 74  AKFSKPESAYQLFDEM-PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELL 132
           A+   P S+  +F  + P  +   WNSII   T NG + ++L  + EM        A   
Sbjct: 65  AQVKDPISSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTF 124

Query: 133 AGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV 192
             +I+ C++I +LELG  +H   +  G FE  +++  AL+D+YS+      A  VFE+M 
Sbjct: 125 PSVINSCARILDLELGCIVHEHAMEMG-FESDLYIGNALIDMYSRFVDLDNARYVFEEMS 183

Query: 193 IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKA 252
            R+ VSW ++ISG   +  ++  +D++   +  G+ P   T++ VLLAC  L  ++ G A
Sbjct: 184 NRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVA 243

Query: 253 IHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSG 312
           +HG     G   D  +   L+ MY +  E L  AR +F +  VKD V W+++I GY+Q G
Sbjct: 244 VHGVIEKIGIAGDVIIGNGLLSMYFK-FERLREARRVFSKMAVKDSVTWNTMICGYAQLG 302

Query: 313 DLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN 372
               ++KLF  M ++   P+ +++ + + +C +   L  G  VH Y++ +G   D    N
Sbjct: 303 RHEASVKLFMDM-IDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACN 361

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
            L++MY+KCG + ++ ++F+    +D V+W +LI+GY   GY +E L+ F +M +   +P
Sbjct: 362 ILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESF-KMMKMERKP 420

Query: 433 DAITVLAILSACNHAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLLGKSGKIEDA 489
           D++T + +LS  +    + +   +  +V+K   E ++ +        +D+  K G+++D 
Sbjct: 421 DSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIG----NSLLDVYAKCGEMDDL 476

Query: 490 CKVVSTM 496
            KV S M
Sbjct: 477 LKVFSYM 483



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 110/400 (27%), Positives = 202/400 (50%), Gaps = 11/400 (2%)

Query: 149 RQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS-WTAMISGCI 207
           R +H+L+I  G   LSV  S  L+  Y++    + ++ VF  +   N V  W ++I    
Sbjct: 39  RTVHSLIITSG-LSLSVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALT 97

Query: 208 DSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
            +  +   +  +  M+ + ++P   T   V+ +CA + DL  G  +H +A   GF+ D +
Sbjct: 98  HNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLY 157

Query: 268 LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
           +  AL+ MY    + L  AR +FE    +D V W+S+I GY  +G   +A+ ++ + R+ 
Sbjct: 158 IGNALIDMYSRFVD-LDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMT 216

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
            + P+  T+ ++L +C     +  G+ VH  I K G+  DV IGN L++MY K   +  +
Sbjct: 217 GMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREA 276

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHA 447
            ++F++MA +D V+W T+I GY   G  E +++LF++M + G  PD +++ + + AC  +
Sbjct: 277 RRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMID-GFVPDMLSITSTIRACGQS 335

Query: 448 GLVKEAETLFNNVMKEKKIALAIEHYAC--YVDLLGKSGKIEDACKVVSTMPMKPSTRIL 505
           G ++  + +   ++         +  AC   +D+  K G +  A +V  T   K S    
Sbjct: 336 GDLQVGKFVHKYLIGS---GFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSV-TW 391

Query: 506 SSLVSACRIHGRL-EVAEMLAHQLIEAEPENAANYTLLSM 544
           +SL++     G   E  E      +E +P++     LLS+
Sbjct: 392 NSLINGYTQSGYYKEGLESFKMMKMERKPDSVTFVLLLSI 431



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 157/301 (52%), Gaps = 2/301 (0%)

Query: 251 KAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQ 310
           + +H      G       S  L+  Y +  + +    +    +   +V +W+SIIR  + 
Sbjct: 39  RTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTH 98

Query: 311 SGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSI 370
           +G  ++A+  ++ MR ++++P++ T  ++++SC R   L  G  VH + M+ G   D+ I
Sbjct: 99  NGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYI 158

Query: 371 GNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV 430
           GNAL++MYS+   + ++  +F EM+ RD VSW +LISGY  +G+ E+AL ++ + + +G+
Sbjct: 159 GNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGM 218

Query: 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDAC 490
            PD  T+ ++L AC     VKE   + + V+++  IA  +      + +  K  ++ +A 
Sbjct: 219 VPDCFTMSSVLLACGSLMAVKEGVAV-HGVIEKIGIAGDVIIGNGLLSMYFKFERLREAR 277

Query: 491 KVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESG 550
           +V S M +K S    ++++      GR E +  L   +I+    +  + T     C +SG
Sbjct: 278 RVFSKMAVKDSV-TWNTMICGYAQLGRHEASVKLFMDMIDGFVPDMLSITSTIRACGQSG 336

Query: 551 N 551
           +
Sbjct: 337 D 337


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 200/581 (34%), Positives = 317/581 (54%), Gaps = 19/581 (3%)

Query: 11  LHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLI 70
           LHLY++ L    +  N    P  +KAC+    H H G  +H  A+ +G  AD  +S +L+
Sbjct: 110 LHLYRRMLR-HRVAPNNYTFPFALKACSALADH-HCGRAIHRHAIHAGLQADLFVSTALL 167

Query: 71  SMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK-- 128
            MY K +    A  +F  MP RD ++WN+++  +  +G Y  ++     M +    L+  
Sbjct: 168 DMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPN 227

Query: 129 AELLAGIISLCSQIGELELGRQIHALVI---------VDGSFELSVFVSTALLDLYSKCH 179
           A  L  ++ L +Q G L  G  +HA  I                 V + TALLD+Y+KC 
Sbjct: 228 ASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCG 287

Query: 180 HWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV---KPTRVTLTI 236
             L A RVF+ M  RNEV+W+A+I G +          LF+AM  +G+    PT  ++  
Sbjct: 288 SLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT--SIAS 345

Query: 237 VLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK 296
            L ACA L  LR G+ +H      G   D     +L+ MY +    +  A  +F+   VK
Sbjct: 346 ALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAK-AGLIDQAIALFDEMAVK 404

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVH 356
           D V +S+++ GY Q+G   EA  +F +M+   +EP++ T+++++ +C+  + L HG   H
Sbjct: 405 DTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSH 464

Query: 357 CYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGE 416
             ++  GL  + SI NAL++MY+KCG I  S Q+FN M +RD VSW T+I+GYG HG G+
Sbjct: 465 GSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGK 524

Query: 417 EALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACY 476
           EA  LFLEM   G  PD +T + +LSAC+H+GLV E +  F+ +     +   +EHY C 
Sbjct: 525 EATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICM 584

Query: 477 VDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENA 536
           VDLL + G +++A + + +MP++   R+  +L+ ACR++  +++ + ++  + E  PE  
Sbjct: 585 VDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGT 644

Query: 537 ANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            N+ LLS + S +G +  A EV  + + +G  KS G S IE
Sbjct: 645 GNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIE 685



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 107/351 (30%), Positives = 174/351 (49%), Gaps = 23/351 (6%)

Query: 215 GIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMH 274
           G+ L+R M R  V P   T    L AC+ L D   G+AIH +A   G   D  +S AL+ 
Sbjct: 109 GLHLYRRMLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLD 168

Query: 275 MYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK--LFSRMRLERIEPN 332
           MY +C   L  A  IF     +D+V W++++ GY+  G    A+   L  +M++ R+ PN
Sbjct: 169 MYVKCA-CLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPN 227

Query: 333 SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD----------VSIGNALMNMYSKCG 382
           + TL+A+L    +Q  L+ G  VH Y ++A L+ +          V +G AL++MY+KCG
Sbjct: 228 ASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCG 287

Query: 383 SITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG---VEPDAITVLA 439
           S+  + ++F+ M AR+ V+W+ LI G+       +A  LF  M   G   + P +I   +
Sbjct: 288 SLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--S 345

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
            L AC     ++  E L + ++ +  +   +      + +  K+G I+ A  +   M +K
Sbjct: 346 ALRACASLDHLRMGEQL-HALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVK 404

Query: 500 PSTRILSSLVSACRIHGRLEVAEML--AHQLIEAEPENAANYTLLSMVCSE 548
             T   S+LVS    +GR E A ++    Q    EP+ A   +L+   CS 
Sbjct: 405 -DTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIP-ACSH 453



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 109/227 (48%), Gaps = 13/227 (5%)

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA--MKLFSRMRLERIEPNSVTLLAILSSC 343
           A  +F++    DV  ++ +IR YS S   + A  + L+ RM   R+ PN+ T    L +C
Sbjct: 76  AHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFALKAC 135

Query: 344 TRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWT 403
           +  +    G  +H + + AGL  D+ +  AL++MY KC  +  +  IF  M ARD V+W 
Sbjct: 136 SALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWN 195

Query: 404 TLISGYGFHGYGEEALQ--LFLEMQESGVEPDAITVLAILSACNHAGLVKEAET------ 455
            +++GY  HG    A+   L ++MQ   + P+A T++A+L      G + +  +      
Sbjct: 196 AMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCI 255

Query: 456 ---LFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
              L  N   + K+   +      +D+  K G +  A +V   MP +
Sbjct: 256 RACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPAR 302


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 180/531 (33%), Positives = 303/531 (57%), Gaps = 2/531 (0%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G ++H   + +   A+      +++MYAK  + + AY++FD MP RD +SWN+II  F+Q
Sbjct: 166 GKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQ 225

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           NGF  ++LE+   M   G    +  L  ++   + +G L +G+ IH   I  G F   V 
Sbjct: 226 NGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAG-FAKLVN 284

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           +STAL D+YSKC     A  +F+ M  +  VSW +M+ G + +   +  I +F  M  EG
Sbjct: 285 ISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEG 344

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           + PT VT+   L ACA+L DL  GK +H +        D  +  +L+ MY +C + +  A
Sbjct: 345 IDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKC-KRVDIA 403

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
             IF     +  V W+++I GY+Q+G +SEA+  FS M+   ++P+S T+++++ +    
Sbjct: 404 SDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAEL 463

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
           S   H   +H  I+++ L+ ++ +  AL++MYSKCG+I  + ++F+ ++ R  ++W  +I
Sbjct: 464 SVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMI 523

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
            GYG HG G  AL LF +M++  VEP+ IT L+++SAC+H+GLV E    F ++ ++  +
Sbjct: 524 DGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGL 583

Query: 467 ALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAH 526
             +++HY   VDLLG++G+I++A   +  MP+ P   +  +   AC+IH  +EV E  A 
Sbjct: 584 EPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGACKIHKNIEVGEKAAK 643

Query: 527 QLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +L E  P+    + LL+ + + +  W    EV + M  KGL K+ G S +E
Sbjct: 644 KLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVE 694



 Score =  218 bits (556), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 151/547 (27%), Positives = 278/547 (50%), Gaps = 22/547 (4%)

Query: 11  LHLYKQELH-PSGLYSNTAILPSVIKAC-AYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
            H   +  H PS +Y + A +  +++ C +  + HQ   L      +K+G   + +    
Sbjct: 34  FHTLSERAHIPSHVYKHPAAV--LLELCTSMKELHQIIPL-----VIKNGLYNEHLFQTK 86

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           L+S+++K+     A ++F+ +  +    +++++  + +N     +L     M        
Sbjct: 87  LVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPV 146

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
                 ++ +C    +L+ G++IH  +I + SF  +VF  T ++++Y+KC     A ++F
Sbjct: 147 VYNFTYLLKVCGDNADLKRGKEIHGQLITN-SFAANVFAMTGVVNMYAKCRQIDDAYKMF 205

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
           ++M  R+ VSW  +I+G   +      ++L   MQ EG +P  +TL  VL A A++  L 
Sbjct: 206 DRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLM 265

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
            GK+IHGYA   GF    ++S AL  MY +C  ++  AR+IF+    K VV W+S++ GY
Sbjct: 266 VGKSIHGYAIRAGFAKLVNISTALADMYSKCG-SVETARLIFDGMDQKTVVSWNSMMDGY 324

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
            Q+G+  +A+ +F +M  E I+P  VT++  L +C     L  G  VH ++ +  L  D+
Sbjct: 325 VQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDI 384

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
           S+ N+L++MYSKC  +  +  IFN +  R  VSW  +I GY  +G   EAL  F EM+  
Sbjct: 385 SVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSL 444

Query: 429 GVEPDAITVLAILSACNHAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLLGKSGK 485
           G++PD+ T+++++ A     + + A+ +   +++   +K I +        VD+  K G 
Sbjct: 445 GMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVT----TALVDMYSKCGA 500

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLS 543
           I  A K+   +  +      ++++     HG    A  L  ++ +   EP +    +++S
Sbjct: 501 IHMARKLFDMISDR-HVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVIS 559

Query: 544 MVCSESG 550
             CS SG
Sbjct: 560 -ACSHSG 565


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 195/558 (34%), Positives = 311/558 (55%), Gaps = 11/558 (1%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           N    P V+KAC+ A         +HC A ++G  AD  +S +L+ +YAK +    A  +
Sbjct: 128 NNYTFPFVLKACS-ALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATV 186

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL 145
           F  MP RD ++WN+++  +  +G Y  ++     M        A  L  ++ L +Q G L
Sbjct: 187 FRRMPARDVVAWNAMLAGYALHGKYSDTIACLLLMQD-DHAPNASTLVALLPLLAQHGAL 245

Query: 146 ELGRQIHALVIVDGSF---ELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAM 202
             GR +HA  +   S    +  V V TALLD+Y+KC H + A RVFE M +RNEV+W+A+
Sbjct: 246 SQGRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSAL 305

Query: 203 ISGCIDSQNYDTGIDLFRAMQREGV---KPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
           + G +          LF+ M  +G+    PT V     L ACA L DL  GK +H     
Sbjct: 306 VGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASA--LRACANLSDLCLGKQLHALLAK 363

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
            G   D     +L+ MY +    +  A  +F++  VKD V +S+++ GY Q+G   EA +
Sbjct: 364 SGLHTDLTAGNSLLSMYAK-AGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFR 422

Query: 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           +F +M+   ++P+  T+++++ +C+  + L HG   H  ++  G+  + SI NAL++MY+
Sbjct: 423 VFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNALIDMYA 482

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           KCG I  S QIF+ M ARD VSW T+I+GYG HG G+EA  LFL+M+    EPD +T + 
Sbjct: 483 KCGRIDLSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFIC 542

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           ++SAC+H+GLV E +  F+ +  +  I   +EHY   VDLL + G +++A + +  MP+K
Sbjct: 543 LISACSHSGLVTEGKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLK 602

Query: 500 PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVW 559
              R+  +L+ ACR+H  +++ + ++  + +  PE   N+ LLS + S +G +  A EV 
Sbjct: 603 ADVRVWGALLGACRVHKNIDLGKQVSSMIQQLGPEGTGNFVLLSNIFSAAGRFDEAAEVR 662

Query: 560 RVMRAKGLSKSYGFSRIE 577
            + + +G  KS G S IE
Sbjct: 663 IIQKEQGFKKSPGCSWIE 680



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 157/328 (47%), Gaps = 50/328 (15%)

Query: 228 KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPAR 287
           +P   T   VL AC+ L DLR+ +A+H +A   G   D  +S AL+ +Y +C    H A 
Sbjct: 126 QPNNYTFPFVLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAA- 184

Query: 288 IIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQS 347
            +F R   +DVV W++++ GY+  G  S+ +     M+ +   PN+ TL+A+L    +  
Sbjct: 185 TVFRRMPARDVVAWNAMLAGYALHGKYSDTIACLLLMQDDH-APNASTLVALLPLLAQHG 243

Query: 348 FLSHGLGVHCYIMKAGLNFD----VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWT 403
            LS G  VH Y ++A    D    V +G AL++MY+KCG +  + ++F  MA R+ V+W+
Sbjct: 244 ALSQGRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWS 303

Query: 404 TLISGYGFHGYGEEALQLFLEM------------------------------------QE 427
            L+ G+   G   EA  LF +M                                     +
Sbjct: 304 ALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAK 363

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487
           SG+  D     ++LS    AGL+ +A TLF+ ++ +  ++     Y+  V    ++GK +
Sbjct: 364 SGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVS-----YSALVSGYVQNGKAD 418

Query: 488 DACKVVSTMP---MKPSTRILSSLVSAC 512
           +A +V   M    ++P    + SL+ AC
Sbjct: 419 EAFRVFRKMQACNVQPDVATMVSLIPAC 446



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 123/263 (46%), Gaps = 14/263 (5%)

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           AR +F++     +  ++++IR YS  G         S  R    +PN+ T   +L +C+ 
Sbjct: 82  ARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFVLKACSA 141

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
              L     VHC+  +AGL+ D+ +  AL+++Y+KC S   +  +F  M ARD V+W  +
Sbjct: 142 LLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDVVAWNAM 201

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK--- 462
           ++GY  HG   + +   L MQ+    P+A T++A+L      G + +   +    ++   
Sbjct: 202 LAGYALHGKYSDTIACLLLMQDDHA-PNASTLVALLPLLAQHGALSQGRAVHAYSVRACS 260

Query: 463 --EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEV 520
             + K  + +      +D+  K G +  A +V   M ++      S+LV    + GR+  
Sbjct: 261 LHDHKDGVLVG--TALLDMYAKCGHLVYASRVFEAMAVRNEV-TWSALVGGFVLCGRMLE 317

Query: 521 A-----EMLAHQLIEAEPENAAN 538
           A     +MLA  L    P + A+
Sbjct: 318 AFSLFKDMLAQGLCFLSPTSVAS 340


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  348 bits (892), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 195/560 (34%), Positives = 311/560 (55%), Gaps = 9/560 (1%)

Query: 26  NTAILPSVI------KACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKP 79
           + A+ PS+I       AC+ +      G + H   +K G  +D  I  +L+SMY K    
Sbjct: 155 DEAMEPSIITFLIVLDACS-SPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSM 213

Query: 80  ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLC 139
           + A Q+FD +  RD  ++N +I  + ++G   ++ ++F  M   GF         I+  C
Sbjct: 214 DGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGC 273

Query: 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSW 199
           S    L  G+ +HA  +  G  +  V V+TAL+ +Y  C     A RVF++M +R+ VSW
Sbjct: 274 STPEALAWGKAVHAQCMNTGLVD-DVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSW 332

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
           T MI G  ++ N +    LF  MQ EG++P R+T   ++ ACA   DL   + IH     
Sbjct: 333 TVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVR 392

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
            GF  D  +  AL+HMY +C  A+  AR +F+    +DVV WS++I  Y ++G   EA +
Sbjct: 393 AGFGTDLLVDTALVHMYAKCG-AIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFE 451

Query: 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
            F  M+   +EP+ VT + +L++C     L  G+ ++   +KA L   + +GNAL+NM  
Sbjct: 452 TFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNALINMNV 511

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           K GSI  +  IF  M  RD V+W  +I GY  HG   EAL LF  M +    P+++T + 
Sbjct: 512 KHGSIERARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVG 571

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           +LSAC+ AG V+E    F+ ++  + I   +E Y C VDLLG++G++++A  +++ MP+K
Sbjct: 572 VLSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDEAELLINRMPLK 631

Query: 500 PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVW 559
           P++ I S+L++ACRI+G L+VAE  A + + +EP + A Y  LS + + +G W    +V 
Sbjct: 632 PNSSIWSTLLAACRIYGNLDVAERAAERCLMSEPYDGAVYVQLSHMYAAAGMWENVAKVR 691

Query: 560 RVMRAKGLSKSYGFSRIENE 579
           +VM ++G+ K  G + IE E
Sbjct: 692 KVMESRGVRKEQGCTWIEVE 711



 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 150/508 (29%), Positives = 265/508 (52%), Gaps = 9/508 (1%)

Query: 46  FGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT 105
            G Q+    ++SG   +    N+LI +++       A Q FD +  +  ++WN+II  + 
Sbjct: 79  LGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYA 138

Query: 106 QNGFYVRSLEMFREMYLCGFVLKAELLAGIISL--CSQIGELELGRQIHALVIVDGSFEL 163
           Q G    +  +FR+M      ++  ++  +I L  CS    L+LG++ HA VI  G F  
Sbjct: 139 QLGHVKEAFALFRQM--VDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVG-FVS 195

Query: 164 SVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQ 223
              + TAL+ +Y K      A +VF+ +  R+  ++  MI G   S + +    LF  MQ
Sbjct: 196 DFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQ 255

Query: 224 REGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEAL 283
           +EG KP R++   +L  C+    L  GKA+H      G   D  ++ AL+ MY  C  ++
Sbjct: 256 QEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCG-SI 314

Query: 284 HPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC 343
             AR +F++ KV+DVV W+ +IRGY+++ ++ +A  LF+ M+ E I+P+ +T + I+++C
Sbjct: 315 EGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINAC 374

Query: 344 TRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWT 403
              + LS    +H  +++AG   D+ +  AL++MY+KCG+I  + Q+F+ M+ RD VSW+
Sbjct: 375 ASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWS 434

Query: 404 TLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKE 463
            +I  Y  +G GEEA + F  M+ + VEPD +T + +L+AC H G +     ++   +K 
Sbjct: 435 AMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKA 494

Query: 464 KKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRL-EVAE 522
             ++  I      +++  K G IE A  +   M ++      + ++    +HG   E  +
Sbjct: 495 DLVS-HIPVGNALINMNVKHGSIERARYIFENM-VQRDVVTWNVMIGGYSLHGNAREALD 552

Query: 523 MLAHQLIEAEPENAANYTLLSMVCSESG 550
           +    L E    N+  +  +   CS +G
Sbjct: 553 LFDRMLKERFRPNSVTFVGVLSACSRAG 580



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 119/362 (32%), Positives = 194/362 (53%), Gaps = 5/362 (1%)

Query: 139 CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
           C  + +  LG+Q+   +I  G  +L+++    L+ L+S C + L A + F+ +  +  V+
Sbjct: 71  CMMLRDAGLGKQVRDHIIQSGR-QLNIYELNTLIKLHSICGNMLEARQTFDSVENKTVVT 129

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258
           W A+I+G     +      LFR M  E ++P+ +T  IVL AC+    L+ GK  H    
Sbjct: 130 WNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVI 189

Query: 259 CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAM 318
             GF  D  +  AL+ MY +   ++  AR +F+    +DV  ++ +I GY++SGD  +A 
Sbjct: 190 KVGFVSDFRIGTALVSMYVK-GGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAF 248

Query: 319 KLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMY 378
           +LF RM+ E  +PN ++ L+IL  C+    L+ G  VH   M  GL  DV +  AL+ MY
Sbjct: 249 QLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMY 308

Query: 379 SKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
             CGSI  + ++F++M  RD VSWT +I GY  +   E+A  LF  MQE G++PD IT +
Sbjct: 309 MGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYI 368

Query: 439 AILSACNHAGLVKEAETLFNNVMKEK-KIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
            I++AC  +  +  A  + + V++      L ++     V +  K G I+DA +V   M 
Sbjct: 369 HIINACASSADLSLAREIHSQVVRAGFGTDLLVD--TALVHMYAKCGAIKDARQVFDAMS 426

Query: 498 MK 499
            +
Sbjct: 427 RR 428



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 67/131 (51%)

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIF 391
           +S T + +   C        G  V  +I+++G   ++   N L+ ++S CG++  + Q F
Sbjct: 60  DSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTF 119

Query: 392 NEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVK 451
           + +  +  V+W  +I+GY   G+ +EA  LF +M +  +EP  IT L +L AC+    +K
Sbjct: 120 DSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLK 179

Query: 452 EAETLFNNVMK 462
             +     V+K
Sbjct: 180 LGKEFHAQVIK 190


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 204/627 (32%), Positives = 332/627 (52%), Gaps = 59/627 (9%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           F E  L LY++ +   G   +    P V+KAC    + +  G  +H     SG + +  +
Sbjct: 125 FLEDVLQLYRR-MQRLGWRPDHYTFPFVLKACGEIPSFR-CGASVHAVVFASGFEWNVFV 182

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYR---DTISWNSIINCFTQNGFYVRSLEMFREMYL 122
            N L+SMY +    E+A Q+FDEM  R   D +SWNSI+  + Q G  +R+++MF  M  
Sbjct: 183 GNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTE 242

Query: 123 -CGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
             G    A  L  ++  C+ +G    G+Q+H   +  G FE  VFV  A++D+Y+KC   
Sbjct: 243 DLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFE-DVFVGNAVVDMYAKCGMM 301

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE---------------- 225
             A +VFE+M +++ VSW AM++G      +D  + LF  ++ E                
Sbjct: 302 EEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGY 361

Query: 226 -------------------GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDH 266
                              G +P  VTL  +L  CA    L +GK  H +A     + D 
Sbjct: 362 AQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDE 421

Query: 267 HLSA-------ALMHMYCECTEALHPARIIFERTKVKD--VVIWSSIIRGYSQSGDLSEA 317
           +          AL+ MY +C ++   AR +F+    KD  VV W+ +I G +Q G+ +EA
Sbjct: 422 NDPGDDLMVINALIDMYSKC-KSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEA 480

Query: 318 MKLFSRMRLER--IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS---IGN 372
           ++LFS+M      + PN+ T+   L +C R   L  G  +H Y+++    F+ +   + N
Sbjct: 481 LELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRN--RFESAMLFVAN 538

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
            L++MYSK G + ++  +F+ M  R+ VSWT+L++GYG HG GEEALQ+F EMQ+  + P
Sbjct: 539 CLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVP 598

Query: 433 DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKV 492
           D +T + +L AC+H+G+V +    FN + K+  +    EHYAC VDLL ++G++++A ++
Sbjct: 599 DGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMEL 658

Query: 493 VSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNW 552
           +  MPMKP+  +  +L+SACR++  +E+ E  A+QL+E E  N  +YTLLS + + +  W
Sbjct: 659 IRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCW 718

Query: 553 LGAEEVWRVMRAKGLSKSYGFSRIENE 579
                +  +M+  G+ K  G S ++  
Sbjct: 719 KDVARIRYLMKNTGIKKRPGCSWVQGR 745



 Score =  234 bits (598), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 164/553 (29%), Positives = 265/553 (47%), Gaps = 59/553 (10%)

Query: 51  HCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEM-PYRDTI-SWNSIINCFTQNG 108
           H   L  G   DP     +ISMY  F+ P  A  +   + P   T+  WN +I      G
Sbjct: 68  HQQLLVQGLPHDPT---HIISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHLG 124

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
           F    L+++R M   G+         ++  C +I     G  +HA+V   G FE +VFV 
Sbjct: 125 FLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASG-FEWNVFVG 183

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIR---NEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
             L+ +Y +C  W  A +VF++M  R   + VSW ++++  +   +    + +F  M  +
Sbjct: 184 NGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTED 243

Query: 226 -GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
            G++P  V+L  VL ACA +     GK +HGYA   G   D  +  A++ MY +C   + 
Sbjct: 244 LGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCG-MME 302

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI--------------- 329
            A  +FER KVKDVV W++++ GYSQ G   +A+ LF ++R E+I               
Sbjct: 303 EANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYA 362

Query: 330 --------------------EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF--- 366
                               EPN VTL+++LS C     L HG   HC+ +K  LN    
Sbjct: 363 QRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDEN 422

Query: 367 ----DVSIGNALMNMYSKCGSITSSHQIFNEMAARD--FVSWTTLISGYGFHGYGEEALQ 420
               D+ + NAL++MYSKC S  ++  +F+ +  +D   V+WT LI G   HG   EAL+
Sbjct: 423 DPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALE 482

Query: 421 LFLEM--QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVD 478
           LF +M   ++ V P+A T+   L AC   G ++    +   V++ +  +  +    C +D
Sbjct: 483 LFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLID 542

Query: 479 LLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE-PENAA 537
           +  KSG + DA +VV     + +    +SL++   +HGR E A  + +++ +     +  
Sbjct: 543 MYSKSGDV-DAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGV 601

Query: 538 NYTLLSMVCSESG 550
            + ++   CS SG
Sbjct: 602 TFVVVLYACSHSG 614



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 131/270 (48%), Gaps = 7/270 (2%)

Query: 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHC 357
           V  W+ +IR     G L + ++L+ RM+     P+  T   +L +C        G  VH 
Sbjct: 110 VFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHA 169

Query: 358 YIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR---DFVSWTTLISGYGFHGY 414
            +  +G  ++V +GN L++MY +CG+  ++ Q+F+EM  R   D VSW ++++ Y   G 
Sbjct: 170 VVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGD 229

Query: 415 GEEALQLFLEMQES-GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY 473
              A+++F  M E  G+ PDA++++ +L AC   G     + +    ++           
Sbjct: 230 SIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGN 289

Query: 474 ACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEP 533
           A  VD+  K G +E+A KV   M +K      +++V+     GR + A  L  ++ E + 
Sbjct: 290 AV-VDMYAKCGMMEEANKVFERMKVKDVVS-WNAMVTGYSQIGRFDDALGLFEKIREEKI 347

Query: 534 E-NAANYTLLSMVCSESGNWLGAEEVWRVM 562
           E N   ++ +    ++ G    A +V+R M
Sbjct: 348 ELNVVTWSAVIAGYAQRGLGFEALDVFRQM 377


>gi|115466810|ref|NP_001057004.1| Os06g0185700 [Oryza sativa Japonica Group]
 gi|55773755|dbj|BAD72438.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595044|dbj|BAF18918.1| Os06g0185700 [Oryza sativa Japonica Group]
 gi|125596287|gb|EAZ36067.1| hypothetical protein OsJ_20377 [Oryza sativa Japonica Group]
          Length = 673

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 184/551 (33%), Positives = 311/551 (56%), Gaps = 4/551 (0%)

Query: 29  ILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDE 88
           +L   +KAC  +   + +G +LHC  +K+G  AD  + NSL+ MYAK    E+A ++FD 
Sbjct: 125 VLSLALKACVRSADFR-YGRRLHCDVVKAGG-ADGFVMNSLVDMYAKAGDLENARKVFDR 182

Query: 89  MPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELG 148
           +P R+ +SW S+++   QNG     L +F EM           +  +++ C+ +G L  G
Sbjct: 183 VPERNVVSWTSMLSGSIQNGIAEEGLVLFNEMRQDNVHPSEYTMVSVLAACAMLGGLHQG 242

Query: 149 RQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCID 208
           R IH  VI  G    + F+S +LLD+Y+KC     A RVF+++   + V WTAMI G   
Sbjct: 243 RWIHGSVIKYG-LSTNSFISASLLDMYAKCEKVEDARRVFDELEFVDIVLWTAMIVGYTQ 301

Query: 209 SQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHL 268
           ++     + LF   +   + P  VT+  V+ A A+LR L  G+++H      G      +
Sbjct: 302 NKRPLDALQLFLHKKFVSIVPNSVTIATVISASAQLRHLPLGRSVHAIGVKLGTMESDVV 361

Query: 269 SAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER 328
             AL+ MY +C +AL  A  IF R  +KDVV W+S++ GYS++G  +E++ LF+RMR++ 
Sbjct: 362 RNALVDMYAKC-QALPEANSIFGRILIKDVVAWNSMMAGYSENGMANESLVLFNRMRMQG 420

Query: 329 IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSH 388
           I P++++++  LS+C   + L  G G H Y +K     ++ +  AL+N+YSKC  + S+ 
Sbjct: 421 ISPDAISVVNALSACVCLADLHIGKGFHTYAIKYAFMSNIYVNTALLNLYSKCADLPSAQ 480

Query: 389 QIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG 448
           ++FN+M  R+ V+W+ +I GYG  G    ++ LF EM +  + P+ +   +ILSAC+H G
Sbjct: 481 RVFNDMTDRNSVTWSAMIGGYGMQGDSAGSIDLFNEMLKENIHPNEVVFTSILSACSHTG 540

Query: 449 LVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSL 508
           +V   +  F+++ +   I  +++HYAC VD++ ++G +E+A + +  MP+K    +  S 
Sbjct: 541 MVTAGKEYFDSMARHFNITPSMKHYACMVDVMARAGNLEEALEFIQNMPIKAGISVWGSF 600

Query: 509 VSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLS 568
           +  C++H RLE  E    ++    PE    Y L+S + +  G W  ++ + R M+ +GL 
Sbjct: 601 LHGCKLHSRLEFGEEAIKKMAALHPETPDFYVLMSNLYTSYGRWDKSQTIRRWMQEQGLV 660

Query: 569 KSYGFSRIENE 579
           K  G S + +E
Sbjct: 661 KLPGCSSVGHE 671



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 144/277 (51%), Gaps = 4/277 (1%)

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE--G 226
           T LL  Y+       A  V +     +  ++  M+   +D+ ++   + L R M+R    
Sbjct: 59  TKLLSCYAALGDLASARGVLDGTPRPDAYAYRVMLGWLVDAGSHADAVALHRDMRRRCPA 118

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
                V L++ L AC    D R G+ +H      G   D  +  +L+ MY +  + L  A
Sbjct: 119 AAQADVVLSLALKACVRSADFRYGRRLHCDVVKAG-GADGFVMNSLVDMYAKAGD-LENA 176

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
           R +F+R   ++VV W+S++ G  Q+G   E + LF+ MR + + P+  T++++L++C   
Sbjct: 177 RKVFDRVPERNVVSWTSMLSGSIQNGIAEEGLVLFNEMRQDNVHPSEYTMVSVLAACAML 236

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
             L  G  +H  ++K GL+ +  I  +L++MY+KC  +  + ++F+E+   D V WT +I
Sbjct: 237 GGLHQGRWIHGSVIKYGLSTNSFISASLLDMYAKCEKVEDARRVFDELEFVDIVLWTAMI 296

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
            GY  +    +ALQLFL  +   + P+++T+  ++SA
Sbjct: 297 VGYTQNKRPLDALQLFLHKKFVSIVPNSVTIATVISA 333



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 133/267 (49%), Gaps = 16/267 (5%)

Query: 233 TLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEA-LHPARIIFE 291
            L ++L AC  LR LR   A+HG            + A    + C      L  AR + +
Sbjct: 23  ALVLLLPACGTLRSLR---ALHGRLLLLTSGLLRGIRARTKLLSCYAALGDLASARGVLD 79

Query: 292 RTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNS----VTLLAILSSCTRQS 347
            T   D   +  ++     +G  ++A+ L   MR  R  P +    V L   L +C R +
Sbjct: 80  GTPRPDAYAYRVMLGWLVDAGSHADAVALHRDMR--RRCPAAAQADVVLSLALKACVRSA 137

Query: 348 FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLIS 407
              +G  +HC ++KAG   D  + N+L++MY+K G + ++ ++F+ +  R+ VSWT+++S
Sbjct: 138 DFRYGRRLHCDVVKAG-GADGFVMNSLVDMYAKAGDLENARKVFDRVPERNVVSWTSMLS 196

Query: 408 GYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIA 467
           G   +G  EE L LF EM++  V P   T++++L+AC   G + +   +  +V+   K  
Sbjct: 197 GSIQNGIAEEGLVLFNEMRQDNVHPSEYTMVSVLAACAMLGGLHQGRWIHGSVI---KYG 253

Query: 468 LAIEHY--ACYVDLLGKSGKIEDACKV 492
           L+   +  A  +D+  K  K+EDA +V
Sbjct: 254 LSTNSFISASLLDMYAKCEKVEDARRV 280


>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Vitis vinifera]
          Length = 853

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 193/567 (34%), Positives = 322/567 (56%), Gaps = 8/567 (1%)

Query: 11  LHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLI 70
           + + + E +P     N+     V+  CA ++   +FG QLH   + SG + D  ++N+L+
Sbjct: 237 MEMRRTETNP-----NSVTFACVLSVCA-SEIMINFGSQLHGLVVSSGLEMDSPVANTLL 290

Query: 71  SMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE 130
           +MYAK      A +LFD MP  D ++WN +I+ + QNGF   +  +F EM        + 
Sbjct: 291 AMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDSI 350

Query: 131 LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQ 190
             +  + L S+   L  G++IH  +I +G   L VF+ +AL+D+Y KC    +A ++F+Q
Sbjct: 351 TFSSFLPLLSEGATLRQGKEIHCYIIRNG-VSLDVFLKSALIDIYFKCRDVEMARKIFDQ 409

Query: 191 MVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNG 250
               + V  TAMISG + +   +  +++FR + +E ++   VTL  VL ACA L  L  G
Sbjct: 410 RTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLG 469

Query: 251 KAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQ 310
           K +HG+    G     ++ +A+M MY +C   L  A   F     KD V W+S+I   SQ
Sbjct: 470 KELHGHILKNGHGGSCYVGSAIMDMYAKCGR-LDLAHQTFIGISDKDAVCWNSMITSCSQ 528

Query: 311 SGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSI 370
           +G   EA+ LF +M +   + + V++ A LS+C     L +G  +H ++M+     D+  
Sbjct: 529 NGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFA 588

Query: 371 GNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV 430
            +AL++MYSKCG++  + ++F+ M  ++ VSW ++I+ YG HG  +++L LF  M   G+
Sbjct: 589 ESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGI 648

Query: 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDAC 490
           +PD +T LAI+SAC HAG V E    F  + +E  I   +EHYAC VDL G++G++ +A 
Sbjct: 649 QPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAF 708

Query: 491 KVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESG 550
            ++++MP  P   +  +L+ ACR+HG +E+AE+ +  L + +P+N+  Y LLS V + +G
Sbjct: 709 GMINSMPFSPDAGVWGTLLGACRLHGNVELAEVASRNLFDLDPQNSGYYVLLSNVHANAG 768

Query: 551 NWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            W    ++  +M+ +G+ K  G S I+
Sbjct: 769 QWESVLKIRSLMKERGVQKVPGCSWID 795



 Score =  241 bits (615), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 160/533 (30%), Positives = 274/533 (51%), Gaps = 12/533 (2%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G   +    P VIKAC         G  +H      G + D  + +SLI  Y++      
Sbjct: 142 GTLPDKYTFPYVIKACG-GLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHD 200

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A  LFD MP +D + WN ++N + +NG +  +  +F EM        +   A ++S+C+ 
Sbjct: 201 ARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCAS 260

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
              +  G Q+H LV+  G  E+   V+  LL +Y+KC H   A R+F+ M   + V+W  
Sbjct: 261 EIMINFGSQLHGLVVSSG-LEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNG 319

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           MISG + +   D    LF  M    +KP  +T +  L   +E   LR GK IH Y    G
Sbjct: 320 MISGYVQNGFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNG 379

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
              D  L +AL+ +Y +C + +  AR IF++    D+V+ +++I GY  +G  + A+++F
Sbjct: 380 VSLDVFLKSALIDIYFKCRD-VEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIF 438

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
             +  ER+  NSVTL ++L +C   + L+ G  +H +I+K G      +G+A+M+MY+KC
Sbjct: 439 RWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKC 498

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
           G +  +HQ F  ++ +D V W ++I+    +G  EEA+ LF +M  +G + D +++ A L
Sbjct: 499 GRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAAL 558

Query: 442 SACNHAGLVKEAETLFNNVMKEKKIALAIEHYA--CYVDLLGKSGKIEDACKVVSTMPMK 499
           SAC +   +   + +   +M+    A   + +A    +D+  K G ++ AC+V  TM  K
Sbjct: 559 SACANLPALHYGKEIHAFMMRG---AFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEK 615

Query: 500 PSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLSMVCSESG 550
                 +S+++A   HGRL+ +  L H ++    +P++     ++S  C  +G
Sbjct: 616 NEVS-WNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIIS-ACGHAG 666



 Score =  208 bits (530), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 138/506 (27%), Positives = 248/506 (49%), Gaps = 19/506 (3%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEM 89
           L S+++ C         G Q H   L +G   + ++   L+ MY        A  +F ++
Sbjct: 49  LVSILQTCTDPSGLSQ-GRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQL 107

Query: 90  PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGR 149
               +  WN +I  FT  G +  +L  + +M  CG +        +I  C  +  + LGR
Sbjct: 108 RLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGR 167

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSK--CHHWLIALRVFEQMVIRNEVSWTAMISGCI 207
            +H  +   G FEL VFV ++L+  YS+  C H   A  +F++M  ++ V W  M++G +
Sbjct: 168 VVHDKIQFMG-FELDVFVGSSLIKFYSENGCIH--DARYLFDRMPSKDGVLWNVMLNGYV 224

Query: 208 DSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
            + ++D    +F  M+R    P  VT   VL  CA    +  G  +HG     G + D  
Sbjct: 225 KNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSP 284

Query: 268 LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
           ++  L+ MY +C   L  AR +F+     D+V W+ +I GY Q+G + EA  LF  M   
Sbjct: 285 VANTLLAMYAKCGH-LFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISA 343

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
           R++P+S+T  + L   +  + L  G  +HCYI++ G++ DV + +AL+++Y KC  +  +
Sbjct: 344 RMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMA 403

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHA 447
            +IF++    D V  T +ISGY  +G    AL++F  + +  +  +++T+ ++L AC   
Sbjct: 404 RKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGL 463

Query: 448 GLVKEAETLFNNVMKEKKIALAIEHYACYV-----DLLGKSGKIEDACKVVSTMPMKPST 502
             +   + L  +++K           +CYV     D+  K G+++ A +    +  K + 
Sbjct: 464 AALTLGKELHGHILKNGHGG------SCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAV 517

Query: 503 RILSSLVSACRIHGRLEVAEMLAHQL 528
              +S++++C  +G+ E A  L  Q+
Sbjct: 518 -CWNSMITSCSQNGKPEEAIDLFRQM 542



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 106/364 (29%), Positives = 184/364 (50%), Gaps = 3/364 (0%)

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
           A  L  I+  C+    L  GRQ HA ++V+G    +  + T LL +Y  C  +L A  +F
Sbjct: 46  APQLVSILQTCTDPSGLSQGRQAHAQMLVNG-IGYNGILGTKLLGMYVLCGAFLDAKNIF 104

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
            Q+ +     W  MI G      +D  +  +  M   G  P + T   V+ AC  L  + 
Sbjct: 105 YQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVA 164

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
            G+ +H      GF+ D  + ++L+  Y E    +H AR +F+R   KD V+W+ ++ GY
Sbjct: 165 LGRVVHDKIQFMGFELDVFVGSSLIKFYSE-NGCIHDARYLFDRMPSKDGVLWNVMLNGY 223

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
            ++GD   A  +F  MR     PNSVT   +LS C  +  ++ G  +H  ++ +GL  D 
Sbjct: 224 VKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDS 283

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
            + N L+ MY+KCG +  + ++F+ M   D V+W  +ISGY  +G+ +EA  LF EM  +
Sbjct: 284 PVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISA 343

Query: 429 GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIED 488
            ++PD+IT  + L   +    +++ + +   +++   ++L +   +  +D+  K   +E 
Sbjct: 344 RMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIR-NGVSLDVFLKSALIDIYFKCRDVEM 402

Query: 489 ACKV 492
           A K+
Sbjct: 403 ARKI 406


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  347 bits (891), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 190/569 (33%), Positives = 312/569 (54%), Gaps = 4/569 (0%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           + + LYKQ +   G+         ++ ACA +  +   G  +H   L+SG  ++  ++N+
Sbjct: 414 EAMRLYKQ-MQSEGVKPGRVTFLHLLSACANSSAYAD-GKMIHEDILRSGIKSNGHLANA 471

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           L++MY +      A  +F+    RD ISWNS+I    Q+G Y  + ++F+EM        
Sbjct: 472 LMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPD 531

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
               A ++S C     LELG+QIH  +   G  +L V +  AL+++Y +C     A  VF
Sbjct: 532 NITFASVLSGCKNPEALELGKQIHGRITESG-LQLDVNLGNALINMYIRCGSLQDARNVF 590

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
             +  R+ +SWTAMI GC D       I+LF  MQ EG +P + T + +L  C     L 
Sbjct: 591 HSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLD 650

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
            GK +  Y    G++ D  +  AL+  Y + + ++  AR +F++   +D+V W+ II GY
Sbjct: 651 EGKKVIAYILNSGYELDTGVGNALISAYSK-SGSMTDAREVFDKMPSRDIVSWNKIIAGY 709

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
           +Q+G    A++   +M+ + + PN  + +++L++C+  S L  G  VH  I+K  L  DV
Sbjct: 710 AQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDV 769

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
            +G AL++MY+KCGS   + ++F+ +  ++ V+W  +I+ Y  HG   +AL  F  M++ 
Sbjct: 770 RVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKE 829

Query: 429 GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIED 488
           G++PD  T  +ILSACNHAGLV E   +F+++  E  +   IEHY C V LLG++ + ++
Sbjct: 830 GIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQE 889

Query: 489 ACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSE 548
           A  +++ MP  P   +  +L+ ACRIHG + +AE  A+  ++    N A Y LLS V + 
Sbjct: 890 AETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAA 949

Query: 549 SGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +G W    ++ RVM  +G+ K  G S IE
Sbjct: 950 AGRWDDVAKIRRVMEGRGIRKEPGRSWIE 978



 Score =  245 bits (625), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 152/498 (30%), Positives = 258/498 (51%), Gaps = 8/498 (1%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           ++H   +++    D  +SN LI+MY K      A+Q+F EMP RD ISWNS+I+C+ Q G
Sbjct: 48  RIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQG 107

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
           F  ++ ++F EM   GF+        I++ C    ELE G++IH+ +I  G ++    V 
Sbjct: 108 FKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAG-YQRDPRVQ 166

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
            +LL +Y KC     A +VF  +  R+ VS+  M+            + LF  M  EG+ 
Sbjct: 167 NSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGIS 226

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
           P +VT   +L A      L  GK IH      G + D  +  AL+ M   C + +  A+ 
Sbjct: 227 PDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGD-VDSAKQ 285

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
            F+ T  +DVV+++++I   +Q G   EA + + RMR + +  N  T L+IL++C+    
Sbjct: 286 AFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKA 345

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
           L  G  +H +I + G + DV IGNAL++MY++CG +  + ++F  M  RD +SW  +I+G
Sbjct: 346 LEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAG 405

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468
           Y       EA++L+ +MQ  GV+P  +T L +LSAC ++    + + +  ++++    + 
Sbjct: 406 YARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSN 465

Query: 469 AIEHYA-CYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQ 527
              H A   +++  + G + +A  V      +      +S+++    HG  E A  L  +
Sbjct: 466 G--HLANALMNMYRRCGSLMEAQNVFEGTQARDVIS-WNSMIAGHAQHGSYETAYKLFQE 522

Query: 528 LI--EAEPENAANYTLLS 543
           +   E EP+N    ++LS
Sbjct: 523 MQNEELEPDNITFASVLS 540



 Score =  241 bits (615), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 141/491 (28%), Positives = 250/491 (50%), Gaps = 5/491 (1%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           F ++   L+ +E+  +G   N     S++ AC Y+      G ++H   +K+G   DP +
Sbjct: 108 FKKKAFQLF-EEMQNAGFIPNKITYISILTAC-YSPAELENGKKIHSQIIKAGYQRDPRV 165

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
            NSL+SMY K      A Q+F  +  RD +S+N+++  + Q  +    L +F +M   G 
Sbjct: 166 QNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGI 225

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
                    ++   +    L+ G++IH L + +G     + V TAL+ +  +C     A 
Sbjct: 226 SPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEG-LNSDIRVGTALVTMCVRCGDVDSAK 284

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
           + F+    R+ V + A+I+      +     + +  M+ +GV   R T   +L AC+  +
Sbjct: 285 QAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSK 344

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
            L  GK IH +    G   D  +  AL+ MY  C + L  AR +F     +D++ W++II
Sbjct: 345 ALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGD-LPKARELFYTMPKRDLISWNAII 403

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
            GY++  D  EAM+L+ +M+ E ++P  VT L +LS+C   S  + G  +H  I+++G+ 
Sbjct: 404 AGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIK 463

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            +  + NALMNMY +CGS+  +  +F    ARD +SW ++I+G+  HG  E A +LF EM
Sbjct: 464 SNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEM 523

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
           Q   +EPD IT  ++LS C +   ++  + +   +  E  + L +      +++  + G 
Sbjct: 524 QNEELEPDNITFASVLSGCKNPEALELGKQIHGRIT-ESGLQLDVNLGNALINMYIRCGS 582

Query: 486 IEDACKVVSTM 496
           ++DA  V  ++
Sbjct: 583 LQDARNVFHSL 593



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 125/247 (50%), Gaps = 1/247 (0%)

Query: 217 DLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMY 276
           D+    Q    +  R T   +L  C   R L   K IH          D  LS  L++MY
Sbjct: 13  DVSNTHQPRPTETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMY 72

Query: 277 CECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTL 336
            +C   L  A  +F+    +DV+ W+S+I  Y+Q G   +A +LF  M+     PN +T 
Sbjct: 73  VKCRSVLD-AHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITY 131

Query: 337 LAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA 396
           ++IL++C   + L +G  +H  I+KAG   D  + N+L++MY KCG +  + Q+F  ++ 
Sbjct: 132 ISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISP 191

Query: 397 RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETL 456
           RD VS+ T++  Y    Y +E L LF +M   G+ PD +T + +L A     ++ E + +
Sbjct: 192 RDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRI 251

Query: 457 FNNVMKE 463
               ++E
Sbjct: 252 HKLTVEE 258


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  347 bits (891), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 192/604 (31%), Positives = 336/604 (55%), Gaps = 39/604 (6%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           F ++ L++++ E+   G+  +   +  ++ AC+  Q  +  G  +H  ALK G   +  +
Sbjct: 222 FPQKGLNVFR-EMVLDGVKPDPVTVSCILSACSDLQDLKS-GKAIHGFALKHGMVENVFV 279

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
           SN+L+++Y        A  +FD MP+R+ I+WNS+ +C+   GF  + L +FREM L G 
Sbjct: 280 SNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGV 339

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
                 ++ I+  CSQ+ +L+ G+ IH   +  G  E  VFV TAL++LY+ C     A 
Sbjct: 340 KPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVE-DVFVCTALVNLYANCLCVREAQ 398

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
            VF+ M  RN V+W ++ S  ++      G+++FR M   GVKP  VT+  +L AC++L+
Sbjct: 399 TVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQ 458

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFE-------------- 291
           DL++GK IHG+A   G   D  +  AL+ +Y +C   +  A+++F+              
Sbjct: 459 DLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCV-CVREAQVVFDLIPHREVASWNGIL 517

Query: 292 --------------------RTKVK-DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE 330
                               R +VK D + WS +I G  ++  + EAM++F +M+    +
Sbjct: 518 TAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFK 577

Query: 331 PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQI 390
           P+  T+ +IL +C+    L  G  +HCY+ +   ++D++  NAL++MY+KCG ++ S  +
Sbjct: 578 PDETTIYSILRACSLSECLRMGKEIHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNV 637

Query: 391 FNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLV 450
           F+ M  +D  SW T+I   G HG G+EAL LF +M  S V+PD+ T   +LSAC+H+ LV
Sbjct: 638 FDMMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSATFTCVLSACSHSMLV 697

Query: 451 KEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVS 510
           +E   +FN++ ++  +    EHY C VD+  ++G +E+A   +  MPM+P+     + ++
Sbjct: 698 EEGVQIFNSMSRDHLVEPEAEHYTCVVDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLA 757

Query: 511 ACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKS 570
            CR++  +E+A++ A +L E +P  +ANY  L  +   +  W  A ++ ++M+ +G++K+
Sbjct: 758 GCRVYKNVELAKISAKKLFEIDPNGSANYVTLFNILVTAKLWSEASKIRKLMKERGITKT 817

Query: 571 YGFS 574
            G S
Sbjct: 818 PGCS 821



 Score =  249 bits (635), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 138/435 (31%), Positives = 245/435 (56%), Gaps = 3/435 (0%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G+  +  +  +V KACA ++       Q H  A + G  +D  I N+ I  Y K    E 
Sbjct: 35  GIKPDKPVFMAVAKACAASRDALKVK-QFHDDATRCGVMSDVSIGNAFIHAYGKCKCVEG 93

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A ++FD++  RD ++WNS+  C+   GF  + L +FR+M L         ++ I+  CS 
Sbjct: 94  ARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANPLTVSSILPGCSD 153

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
           + +L+ G++IH  V+  G  E  VFVS+A ++ Y+KC     A  VF+ M  R+ V+W +
Sbjct: 154 LQDLKSGKEIHGFVVRHGMVE-DVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNS 212

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           + S  ++      G+++FR M  +GVKP  VT++ +L AC++L+DL++GKAIHG+A   G
Sbjct: 213 LSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHG 272

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
              +  +S AL+++Y  C   +  A+ +F+    ++V+ W+S+   Y   G   + + +F
Sbjct: 273 MVENVFVSNALVNLYESCL-CVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVF 331

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
             M L  ++P+ + + +IL +C++   L  G  +H + +K G+  DV +  AL+N+Y+ C
Sbjct: 332 REMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANC 391

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
             +  +  +F+ M  R+ V+W +L S Y   G+ ++ L +F EM  +GV+PD +T+L+IL
Sbjct: 392 LCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSIL 451

Query: 442 SACNHAGLVKEAETL 456
            AC+    +K  + +
Sbjct: 452 HACSDLQDLKSGKVI 466



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 131/252 (51%), Gaps = 5/252 (1%)

Query: 213 DTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAAL 272
           +  I ++ + +  G+KP +     V  ACA  RD    K  H  A  CG   D  +  A 
Sbjct: 22  NEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGNAF 81

Query: 273 MHMY--CECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE 330
           +H Y  C+C E    AR +F+    +DVV W+S+   Y   G   + + +F +M L +++
Sbjct: 82  IHAYGKCKCVEG---ARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVK 138

Query: 331 PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQI 390
            N +T+ +IL  C+    L  G  +H ++++ G+  DV + +A +N Y+KC  +  +  +
Sbjct: 139 ANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTV 198

Query: 391 FNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLV 450
           F+ M  RD V+W +L S Y   G+ ++ L +F EM   GV+PD +TV  ILSAC+    +
Sbjct: 199 FDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDL 258

Query: 451 KEAETLFNNVMK 462
           K  + +    +K
Sbjct: 259 KSGKAIHGFALK 270


>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
          Length = 732

 Score =  347 bits (891), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 191/568 (33%), Positives = 322/568 (56%), Gaps = 5/568 (0%)

Query: 10  TLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSL 69
           +L L+ Q +  + +  +  ++ SV+ AC+  +  +  G Q+H   L+ G++ D  + N L
Sbjct: 122 SLELFAQ-MRETNVVPDRYVVSSVLSACSMLEFLEG-GKQIHAYVLRRGTEMDVSVVNVL 179

Query: 70  ISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKA 129
           I  Y K ++ ++  +LFD+M  ++ ISW ++I+ + QN F   ++++F EM   G+    
Sbjct: 180 IDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDG 239

Query: 130 ELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
                +++ C  +  LE GRQ+HA  I   + E + FV   L+D+Y+K +    A +VF+
Sbjct: 240 FACTSVLTSCGSLEALEQGRQVHAYTI-KANLESNEFVKNGLIDMYAKSNLLXDAKKVFD 298

Query: 190 QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
            M  +N +S+ AMI G    +     ++LF  M+     P+ +T   +L   A L  L  
Sbjct: 299 VMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALEL 358

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
            K IHG     G   D    +AL+ +Y +C+  +  AR +FE    KD+V+W+++  GY+
Sbjct: 359 SKQIHGLIIKXGVSLDLFAGSALIDVYSKCS-YVKDARHVFEEMNEKDIVVWNAMFFGYT 417

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
           Q  +  EA+KL+S ++  R +PN  T  A++++ +  + L HG   H  ++K GL+F   
Sbjct: 418 QHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPF 477

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
           + NAL++MY+KCGSI  + ++FN    RD V W ++IS +  HG  EEAL +F EM + G
Sbjct: 478 VTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEG 537

Query: 430 VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
           ++P+ +T +A+LSAC+HAG V++    FN+ M    I    EHYAC V LLG+SGK+ +A
Sbjct: 538 IQPNYVTFVAVLSACSHAGXVEDGLNHFNS-MPGFGIKPGTEHYACVVSLLGRSGKLFEA 596

Query: 490 CKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSES 549
            + +  MP++P+  +  SL+SACRI G +E+ +  A   I  +P+++ +Y LLS + +  
Sbjct: 597 KEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASK 656

Query: 550 GNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           G W   ++V   M +  + K  G S IE
Sbjct: 657 GMWADVKKVRDRMDSSEVVKEPGRSWIE 684



 Score =  262 bits (670), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 166/553 (30%), Positives = 283/553 (51%), Gaps = 10/553 (1%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           M  + + E+ L ++      SG + N  +L SVI+AC      +  G QLH   ++SG D
Sbjct: 11  MEDEGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEK-GAQLHGFVVRSGFD 69

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
            D  +  SLI  Y+K    E A  +FD++  +  ++W +II  +T+ G    SLE+F +M
Sbjct: 70  QDVYVGTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQM 129

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
                V    +++ ++S CS +  LE G+QIHA V+  G+ E+ V V   L+D Y+KC+ 
Sbjct: 130 RETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGT-EMDVSVVNVLIDFYTKCNR 188

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
                ++F+QMV++N +SWT MISG + +      + LF  M R G KP     T VL +
Sbjct: 189 VKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTS 248

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
           C  L  L  G+ +H Y      + +  +   L+ MY + +  L  A+ +F+    ++V+ 
Sbjct: 249 CGSLEALEQGRQVHAYTIKANLESNEFVKNGLIDMYAK-SNLLXDAKKVFDVMAEQNVIS 307

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           ++++I GYS    LSEA++LF  MR+    P+ +T +++L        L     +H  I+
Sbjct: 308 YNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLII 367

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
           K G++ D+  G+AL+++YSKC  +  +  +F EM  +D V W  +  GY  H   EEAL+
Sbjct: 368 KXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALK 427

Query: 421 LFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYA--CYVD 478
           L+  +Q S  +P+  T  A+++A ++   ++  +   N ++   K+ L    +     VD
Sbjct: 428 LYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLV---KMGLDFCPFVTNALVD 484

Query: 479 LLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA-EMLAHQLIEAEPENAA 537
           +  K G IE+A K+ ++   +      +S++S    HG  E A  M    + E    N  
Sbjct: 485 MYAKCGSIEEARKMFNSSIWRDVV-CWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYV 543

Query: 538 NYTLLSMVCSESG 550
            +  +   CS +G
Sbjct: 544 TFVAVLSACSHAG 556


>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
 gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
          Length = 862

 Score =  347 bits (891), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 187/562 (33%), Positives = 326/562 (58%), Gaps = 3/562 (0%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           + +  SG   N A L   +  CA A+     G+QLH  A+K G + +  ++N+L+SMYAK
Sbjct: 231 RNMRVSGCEPNFATLACFLSVCA-AEADLLSGVQLHSLAVKCGLEQEVAVANTLLSMYAK 289

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
               + A++LF+ +P  D ++WN +I+   QNG    +L +F +M   G    +  L  +
Sbjct: 290 CRCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSL 349

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           +   + +  L+ G+++H  +I +    +  F+ +AL+D+Y KC     A  +++     +
Sbjct: 350 LPALTDLNGLKQGKEVHGYIIRN-CVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAID 408

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
            V  + +ISG + +   +  + +FR +  + +KP  VT+  VL ACA +  L  G+ IHG
Sbjct: 409 VVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQEIHG 468

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
           Y     ++   ++ +ALM MY +C   L  +  IF +  +KD V W+S+I  +SQ+G+  
Sbjct: 469 YVLRNAYEGKCYVESALMDMYAKCGR-LDLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQ 527

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           EA+ LF +M +E I+ N+VT+ + LS+C     + +G  +H  I+K  +  D+   +AL+
Sbjct: 528 EALDLFRQMCMEGIKYNNVTISSALSACASLPAIYYGKEIHGVIIKGPIKADIFAESALI 587

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           +MY+KCG++  + ++F  M  ++ VSW ++IS YG HG  +E++     MQE G +PD +
Sbjct: 588 DMYAKCGNMELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSFLHRMQEEGYKPDHV 647

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           T LA++SAC HAGLV+E   LF  + KE  IA  +EH+AC VDL  +SG+++ A + ++ 
Sbjct: 648 TFLALISACAHAGLVEEGLQLFQCMTKEYLIAPRMEHFACMVDLYSRSGRLDKAIQFIAD 707

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGA 555
           MP KP   I  +L+ ACR+H  +E+A++ + +L + +P N+  Y L+S + + +G W G 
Sbjct: 708 MPFKPDAGIWGALLHACRVHRNVELADIASQELFKLDPGNSGYYVLMSNINAVAGRWDGV 767

Query: 556 EEVWRVMRAKGLSKSYGFSRIE 577
            +V R+M+   + K  G+S ++
Sbjct: 768 SKVRRLMKDNKILKIPGYSWVD 789



 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 170/548 (31%), Positives = 289/548 (52%), Gaps = 8/548 (1%)

Query: 5   HFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPV 64
           H     L   K   HP+    +   LP V+K+CA A      G  +H TA  +G  +D  
Sbjct: 119 HHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCA-ALGAVSLGRLVHRTARATGLASDVY 177

Query: 65  ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG 124
           + ++LI MY+       A   FD MP+RD + WN +++ + + G    ++ +FR M + G
Sbjct: 178 VGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGAVRLFRNMRVSG 237

Query: 125 FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
                  LA  +S+C+   +L  G Q+H+L +  G  E  V V+  LL +Y+KC     A
Sbjct: 238 CEPNFATLACFLSVCAAEADLLSGVQLHSLAVKCG-LEQEVAVANTLLSMYAKCRCLDDA 296

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
            R+FE +   + V+W  MISGC+ +   D  + LF  M R G +P  VTL  +L A  +L
Sbjct: 297 WRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDL 356

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
             L+ GK +HGY        D  L +AL+ +Y +C + +  AR +++  +  DVVI S++
Sbjct: 357 NGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRD-VRTARNLYDAARAIDVVIGSTV 415

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
           I GY  +G   +A+++F  +  + I+PN+VT+ ++L +C   S L  G  +H Y+++   
Sbjct: 416 ISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQEIHGYVLRNAY 475

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
                + +ALM+MY+KCG +  SH IF++M+ +D V+W ++IS +  +G  +EAL LF +
Sbjct: 476 EGKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFRQ 535

Query: 425 MQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSG 484
           M   G++ + +T+ + LSAC     +   + +   ++K   I   I   +  +D+  K G
Sbjct: 536 MCMEGIKYNNVTISSALSACASLPAIYYGKEIHGVIIK-GPIKADIFAESALIDMYAKCG 594

Query: 485 KIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTLL 542
            +E A +V   MP K      +S++SA   HG ++ +    H++ E   +P++     L+
Sbjct: 595 NMELALRVFEFMPDKNEVS-WNSIISAYGAHGLVKESVSFLHRMQEEGYKPDHVTFLALI 653

Query: 543 SMVCSESG 550
           S  C+ +G
Sbjct: 654 S-ACAHAG 660



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 146/512 (28%), Positives = 253/512 (49%), Gaps = 23/512 (4%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADP---VISNSLISMYAKFSKPESAYQLF 86
           L ++++ C  A  H   GLQ+H  A+ SG+ ++     +   L+ MY    +   A  +F
Sbjct: 35  LLALLRGCVSA-PHLPLGLQIHARAVVSGALSNHNHLALHTRLLGMYVLARRFRDAVAVF 93

Query: 87  DEMPYR---DTISWNSIINCFTQNGFYVRSLEMFREMYL--CGFVLKAELLAGIISLCSQ 141
             +P      ++ WN +I  FT  G +  ++  + +M+         A  L  ++  C+ 
Sbjct: 94  SALPRAAAGSSLPWNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCAA 153

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
           +G + LGR +H      G     V+V +AL+ +YS       A   F+ M  R+ V W  
Sbjct: 154 LGAVSLGRLVHRTARATG-LASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNV 212

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           M+ G I + +    + LFR M+  G +P   TL   L  CA   DL +G  +H  A  CG
Sbjct: 213 MMDGYIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQLHSLAVKCG 272

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
            + +  ++  L+ MY +C   L  A  +FE     D+V W+ +I G  Q+G L EA+ LF
Sbjct: 273 LEQEVAVANTLLSMYAKC-RCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLF 331

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
             M      P+SVTL+++L + T  + L  G  VH YI++  ++ D  + +AL+++Y KC
Sbjct: 332 CDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKC 391

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
             + ++  +++   A D V  +T+ISGY  +G  E+ALQ+F  + E  ++P+A+TV ++L
Sbjct: 392 RDVRTARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVL 451

Query: 442 SACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYV-----DLLGKSGKIEDACKVVSTM 496
            AC     +   + +   V++      A E   CYV     D+  K G+++ +  + S M
Sbjct: 452 PACASISALPLGQEIHGYVLRN-----AYEG-KCYVESALMDMYAKCGRLDLSHYIFSKM 505

Query: 497 PMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
            +K      +S++S+   +G  + A  L  Q+
Sbjct: 506 SLKDEV-TWNSMISSFSQNGEPQEALDLFRQM 536



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 175/345 (50%), Gaps = 8/345 (2%)

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELS--VFVSTALLDLYSKCHHWLI 183
           V  A+ L  ++  C     L LG QIHA  +V G+      + + T LL +Y     +  
Sbjct: 29  VSSADRLLALLRGCVSAPHLPLGLQIHARAVVSGALSNHNHLALHTRLLGMYVLARRFRD 88

Query: 184 ALRVFEQM---VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRV--TLTIVL 238
           A+ VF  +      + + W  +I G   + ++   +  +  M      P+    TL  V+
Sbjct: 89  AVAVFSALPRAAAGSSLPWNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVV 148

Query: 239 LACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDV 298
            +CA L  +  G+ +H  A   G   D ++ +AL+ MY +    L  AR  F+    +D 
Sbjct: 149 KSCAALGAVSLGRLVHRTARATGLASDVYVGSALIKMYSD-AGLLRDARDAFDGMPWRDC 207

Query: 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCY 358
           V+W+ ++ GY ++GD+  A++LF  MR+   EPN  TL   LS C  ++ L  G+ +H  
Sbjct: 208 VLWNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQLHSL 267

Query: 359 IMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEA 418
            +K GL  +V++ N L++MY+KC  +  + ++F  +   D V+W  +ISG   +G  +EA
Sbjct: 268 AVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEA 327

Query: 419 LQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKE 463
           L LF +M  SG  PD++T++++L A      +K+ + +   +++ 
Sbjct: 328 LGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRN 372


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  347 bits (891), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 190/546 (34%), Positives = 301/546 (55%), Gaps = 3/546 (0%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPY 91
           S++ AC+      ++G ++H   +++G   D  + N+LISMYAK      A ++FD M  
Sbjct: 134 SILSACSSPAV-LNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMAS 192

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQI 151
           RD +SW ++   + ++G+   SL+ +  M              ++S C  +  LE G+QI
Sbjct: 193 RDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQI 252

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQN 211
           HA  IV+  +   V VSTAL  +Y KC  +  A  VFE +  R+ ++W  MI G +DS  
Sbjct: 253 HAH-IVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQ 311

Query: 212 YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAA 271
            +     F  M  EGV P R T T VL ACA    L  GK IH  A   G   D     A
Sbjct: 312 LEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNA 371

Query: 272 LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP 331
           L++MY +   ++  AR +F+R   +DVV W++++  Y+    + E+   F +M  + ++ 
Sbjct: 372 LINMYSKAG-SMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKA 430

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIF 391
           N +T + +L +C+    L  G  +H  ++KAGL  D+++ NALM+MY KCGS+  + ++F
Sbjct: 431 NKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVF 490

Query: 392 NEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVK 451
             M+ RD V+W TLI G G +G G EALQ +  M+  G+ P+A T + +LSAC    LV+
Sbjct: 491 EGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLVE 550

Query: 452 EAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSA 511
           E    F  + K+  I    +HYAC VD+L ++G + +A  V+ T+P+KPS  +  +L++A
Sbjct: 551 EGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAEDVILTIPLKPSAAMWGALLAA 610

Query: 512 CRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSY 571
           CRIH  +E+ E  A   ++ EP+NA  Y  LS + + +G W    ++ + M+ +G+ K  
Sbjct: 611 CRIHCNVEIGERAAEHCLKLEPQNAGLYVSLSAIYAAAGMWRDVAKLRKFMKERGVKKEP 670

Query: 572 GFSRIE 577
           G S IE
Sbjct: 671 GRSWIE 676



 Score =  264 bits (675), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 172/533 (32%), Positives = 262/533 (49%), Gaps = 8/533 (1%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           Q LH  G   ++     ++++C  A+     G Q+H   L+ G   +  I+N+L+ +YA 
Sbjct: 17  QYLHRKGPQVDSYDYVKLLQSCVKAKDLA-VGKQVHEHILRCGVKPNVYITNTLLKLYAH 75

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
                 A QLFD+   +  +SWN +I+ +   G    +  +F  M              I
Sbjct: 76  CGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSI 135

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           +S CS    L  GR+IH  V+  G       V  AL+ +Y+KC     A RVF+ M  R+
Sbjct: 136 LSACSSPAVLNWGREIHVRVMEAG-LANDTTVGNALISMYAKCGSVRDARRVFDAMASRD 194

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
           EVSWT +     +S   +  +  + AM +E V+P+R+T   VL AC  L  L  GK IH 
Sbjct: 195 EVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHA 254

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
           +     +  D  +S AL  MY +C  A   AR +FE    +DV+ W+++IRG+  SG L 
Sbjct: 255 HIVESEYHSDVRVSTALTKMYMKCG-AFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLE 313

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           EA   F RM  E + P+  T   +LS+C R   L+ G  +H    K GL  DV  GNAL+
Sbjct: 314 EAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALI 373

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           NMYSK GS+  + Q+F+ M  RD VSWTTL+  Y       E+   F +M + GV+ + I
Sbjct: 374 NMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKI 433

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIA-LAIEHYACYVDLLGKSGKIEDACKVVS 494
           T + +L AC++   +K  + +   V+K   +A LA+ +    + +  K G +EDA +V  
Sbjct: 434 TYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTN--ALMSMYFKCGSVEDAIRVFE 491

Query: 495 TMPMKPSTRILSSLVSACRIHGR-LEVAEMLAHQLIEAEPENAANYTLLSMVC 546
            M M+      ++L+     +GR LE  +       E    NAA +  +   C
Sbjct: 492 GMSMRDVV-TWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSAC 543



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 105/344 (30%), Positives = 189/344 (54%), Gaps = 6/344 (1%)

Query: 217 DLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMY 276
           D+ + + R+G +        +L +C + +DL  GK +H +   CG   + +++  L+ +Y
Sbjct: 14  DVLQYLHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLY 73

Query: 277 CECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTL 336
             C  +++ AR +F++   K VV W+ +I GY+  G   EA  LF+ M+ ER+EP+  T 
Sbjct: 74  AHCG-SVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTF 132

Query: 337 LAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA 396
           ++ILS+C+  + L+ G  +H  +M+AGL  D ++GNAL++MY+KCGS+  + ++F+ MA+
Sbjct: 133 VSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMAS 192

Query: 397 RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETL 456
           RD VSWTTL   Y   GYGEE+L+ +  M +  V P  IT + +LSAC     +++ + +
Sbjct: 193 RDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQI 252

Query: 457 FNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG 516
             +++ E +    +        +  K G  +DA +V   +  +      ++++      G
Sbjct: 253 HAHIV-ESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYR-DVIAWNTMIRGFVDSG 310

Query: 517 RLEVAEMLAHQLIE--AEPENAANYTLLSMVCSESGNWLGAEEV 558
           +LE A    H+++E    P+ A   T+LS  C+  G     +E+
Sbjct: 311 QLEEAHGTFHRMLEEGVAPDRATYTTVLS-ACARPGGLARGKEI 353


>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 959

 Score =  347 bits (890), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 189/562 (33%), Positives = 318/562 (56%), Gaps = 3/562 (0%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           QE+  S +  N+     ++  CA  +     G+QLH   ++SG ++DP ++N++I+MY+K
Sbjct: 267 QEMRNSCVKPNSVSFVCLLSVCA-TRGIVRAGIQLHGLVIRSGFESDPTVANTIITMYSK 325

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
                 A ++FD MP  DT++WN +I  + QNGF   ++ +F+ M   G  L +   A  
Sbjct: 326 CGNLFDARKIFDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASF 385

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           +    + G L+  +++H+ ++  G     V++ +AL+D+Y K     +A + F+Q  + +
Sbjct: 386 LPSVLKSGSLKYCKEVHSYIVRHG-VPFDVYLKSALVDIYFKGGDVEMACKTFQQNTLVD 444

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
               TAMISG + +      ++LFR + +EG+ P  +T+  VL ACA L  L+ GK +H 
Sbjct: 445 VAVCTAMISGYVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKLGKELHC 504

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
                G +    + +++ +MY + +  L  A   F R  VKD V W+ +I  +SQ+G   
Sbjct: 505 DILKKGLENVCQVGSSITYMYAK-SGRLDLAYQFFRRMPVKDSVCWNLMIVSFSQNGKPE 563

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
            A+ LF +M     + +SV+L A LS+C     L +G  +HC++++     D  + + L+
Sbjct: 564 LAIDLFRQMGTSGTKFDSVSLSATLSACANYPALYYGKELHCFVVRNSFISDTFVASTLI 623

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           +MYSKCG +  +  +F+ M  ++ VSW ++I+ YG HG   E L LF EM E+G++PD +
Sbjct: 624 DMYSKCGKLALARSVFDMMDWKNEVSWNSIIAAYGNHGRPRECLDLFHEMVEAGIQPDHV 683

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           T L I+SAC HAGLV E    F  + +E  I   +EH+AC VDL G++G++ +A   + +
Sbjct: 684 TFLVIMSACGHAGLVDEGIYYFRCMTEEYGICARMEHFACMVDLYGRAGRLHEAFDTIKS 743

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGA 555
           MP  P      SL+ ACR+HG +E+A++ +  L+E +P N+  Y LLS V + +G W   
Sbjct: 744 MPFTPDAGTWGSLLGACRLHGNVELAKLASKHLVELDPNNSGYYVLLSNVHAGAGEWESV 803

Query: 556 EEVWRVMRAKGLSKSYGFSRIE 577
            +V  +M+ KG+ K  G+S I+
Sbjct: 804 LKVRSLMKEKGVQKIPGYSWID 825



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 156/537 (29%), Positives = 266/537 (49%), Gaps = 18/537 (3%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           S +  +    P VIKAC     +      +H  A   G   D  I +SLI +Y       
Sbjct: 171 SNVAPDKYTFPYVIKACG-GLNNVPLCKMVHELARSMGFHMDLFIGSSLIKLYTDNGYIH 229

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
            A  LFDE+P RD I WN ++N + +NG +  +L  F+EM        +     ++S+C+
Sbjct: 230 DAKYLFDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVKPNSVSFVCLLSVCA 289

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
             G +  G Q+H LVI  G FE    V+  ++ +YSKC +   A ++F+ M   + V+W 
Sbjct: 290 TRGIVRAGIQLHGLVIRSG-FESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDTVTWN 348

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
            +I+G + +   D  + LF+AM   GVK   +T    L +  +   L+  K +H Y    
Sbjct: 349 GLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSLKYCKEVHSYIVRH 408

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
           G  FD +L +AL+ +Y +  +     +  F++  + DV + +++I GY  +G   EA+ L
Sbjct: 409 GVPFDVYLKSALVDIYFKGGDVEMACK-TFQQNTLVDVAVCTAMISGYVLNGLNVEALNL 467

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
           F  +  E + PN +T+ ++L +C   + L  G  +HC I+K GL     +G+++  MY+K
Sbjct: 468 FRWLIQEGMVPNCLTMASVLPACAALASLKLGKELHCDILKKGLENVCQVGSSITYMYAK 527

Query: 381 CGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
            G +  ++Q F  M  +D V W  +I  +  +G  E A+ LF +M  SG + D++++ A 
Sbjct: 528 SGRLDLAYQFFRRMPVKDSVCWNLMIVSFSQNGKPELAIDLFRQMGTSGTKFDSVSLSAT 587

Query: 441 LSAC-NHAGLVKEAE----TLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           LSAC N+  L    E     + N+ + +  +A  +      +D+  K GK+  A  V   
Sbjct: 588 LSACANYPALYYGKELHCFVVRNSFISDTFVASTL------IDMYSKCGKLALARSVFDM 641

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLSMVCSESG 550
           M  K      +S+++A   HGR      L H+++EA  +P++     ++S  C  +G
Sbjct: 642 MDWKNEVS-WNSIIAAYGNHGRPRECLDLFHEMVEAGIQPDHVTFLVIMS-ACGHAG 696



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 126/480 (26%), Positives = 235/480 (48%), Gaps = 4/480 (0%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           Q+H   L  G +    + + ++ MY      +    LF  +    ++ WN +I  F+  G
Sbjct: 97  QIHAKVLVCGMNGSLTLGSRMLGMYVLCRSFKDVGNLFCRLQLCYSLPWNWLIRGFSMLG 156

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
            +  +L  F  M              +I  C  +  + L + +H L    G F + +F+ 
Sbjct: 157 CFDFALMFFFRMLGSNVAPDKYTFPYVIKACGGLNNVPLCKMVHELARSMG-FHMDLFIG 215

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
           ++L+ LY+   +   A  +F+++ +R+ + W  M++G + + ++++ +  F+ M+   VK
Sbjct: 216 SSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVK 275

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
           P  V+   +L  CA    +R G  +HG     GF+ D  ++  ++ MY +C   L  AR 
Sbjct: 276 PNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVANTIITMYSKCGN-LFDARK 334

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
           IF+     D V W+ +I GY Q+G   EA+ LF  M    ++ +S+T  + L S  +   
Sbjct: 335 IFDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGS 394

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
           L +   VH YI++ G+ FDV + +AL+++Y K G +  + + F +    D    T +ISG
Sbjct: 395 LKYCKEVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMISG 454

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468
           Y  +G   EAL LF  + + G+ P+ +T+ ++L AC     +K  + L  +++K K +  
Sbjct: 455 YVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKLGKELHCDILK-KGLEN 513

Query: 469 AIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
             +  +    +  KSG+++ A +    MP+K S      +VS  + +G+ E+A  L  Q+
Sbjct: 514 VCQVGSSITYMYAKSGRLDLAYQFFRRMPVKDSVCWNLMIVSFSQ-NGKPELAIDLFRQM 572



 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 184/343 (53%), Gaps = 3/343 (0%)

Query: 149 RQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCID 208
           RQIHA V+V G    S+ + + +L +Y  C  +     +F ++ +   + W  +I G   
Sbjct: 96  RQIHAKVLVCG-MNGSLTLGSRMLGMYVLCRSFKDVGNLFCRLQLCYSLPWNWLIRGFSM 154

Query: 209 SQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHL 268
              +D  +  F  M    V P + T   V+ AC  L ++   K +H  A   GF  D  +
Sbjct: 155 LGCFDFALMFFFRMLGSNVAPDKYTFPYVIKACGGLNNVPLCKMVHELARSMGFHMDLFI 214

Query: 269 SAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER 328
            ++L+ +Y +    +H A+ +F+   V+D ++W+ ++ GY ++GD + A+  F  MR   
Sbjct: 215 GSSLIKLYTD-NGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSC 273

Query: 329 IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSH 388
           ++PNSV+ + +LS C  +  +  G+ +H  ++++G   D ++ N ++ MYSKCG++  + 
Sbjct: 274 VKPNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVANTIITMYSKCGNLFDAR 333

Query: 389 QIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG 448
           +IF+ M   D V+W  LI+GY  +G+ +EA+ LF  M  SGV+ D+IT  + L +   +G
Sbjct: 334 KIFDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSG 393

Query: 449 LVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACK 491
            +K  + + + +++   +   +   +  VD+  K G +E ACK
Sbjct: 394 SLKYCKEVHSYIVRH-GVPFDVYLKSALVDIYFKGGDVEMACK 435


>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Brachypodium distachyon]
          Length = 849

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 188/560 (33%), Positives = 322/560 (57%), Gaps = 3/560 (0%)

Query: 18  LHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFS 77
           +  SG   N A L   +  CA A+     G+QLH  A+K G + +  ++N+L+SMYAK  
Sbjct: 239 MRASGCDPNFATLACFLSVCA-AEADLLSGVQLHTLAVKYGLEPEVAVANTLVSMYAKCQ 297

Query: 78  KPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS 137
             E A++LF  MP  D ++WN +I+   QNG    +L +F +M   G    +  LA ++ 
Sbjct: 298 CLEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLP 357

Query: 138 LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197
             +++   + G++IH   IV     + VF+ +AL+D+Y KC    +A  VF+     + V
Sbjct: 358 ALTELNGFKQGKEIHGY-IVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATKSIDVV 416

Query: 198 SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
             + MISG + ++  +  + +FR +   G+KP  V +   L ACA +  +R G+ +HGY 
Sbjct: 417 IGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQELHGYV 476

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
               ++   ++ +ALM MY +C   L  +  +F +   KD V W+S+I  ++Q+G+  EA
Sbjct: 477 LKNAYEGRCYVESALMDMYSKCGR-LDLSHYMFSKMSAKDEVTWNSMISSFAQNGEPEEA 535

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
           + LF +M +E ++ N+VT+ +ILS+C     + +G  +H  I+K  +  D+   +AL++M
Sbjct: 536 LDLFRQMIMEGVKYNNVTISSILSACAGLPAIYYGKEIHGIIIKGPIRADLFAESALIDM 595

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           Y KCG++  + ++F  M  ++ VSW ++IS YG HG  +E++ L   MQE G + D +T 
Sbjct: 596 YGKCGNLELALRVFEHMPEKNEVSWNSIISAYGAHGLVKESVDLLCCMQEEGFKADHVTF 655

Query: 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
           LA++SAC HAG V+E   LF  + +E  I   +EH +C VDL  ++GK++ A + ++ MP
Sbjct: 656 LALISACAHAGQVQEGLRLFRCMTEEYHIEPQVEHLSCMVDLYSRAGKLDKAMQFIADMP 715

Query: 498 MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEE 557
            KP   I  +L+ ACR+H  +E+AE+ + +L + +P N   Y L+S + + +G W G  +
Sbjct: 716 FKPDAGIWGALLHACRVHRNVELAEIASQELFKLDPHNCGYYVLMSNINAVAGRWDGVSK 775

Query: 558 VWRVMRAKGLSKSYGFSRIE 577
           + R+M+ K + K  G+S ++
Sbjct: 776 MRRLMKDKKVQKIPGYSWVD 795



 Score =  261 bits (666), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 179/564 (31%), Positives = 293/564 (51%), Gaps = 10/564 (1%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           ++ H     L   K   HPS    +   LP V+K+CA A    H G  +H T    G D 
Sbjct: 122 MAGHHRLAVLFYVKMWAHPSSPRPDGHTLPYVVKSCA-ALGALHLGRLVHRTTRALGLDR 180

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D  + ++LI MYA     + A ++FD M  RD + WN +++ + + G    ++ +FR M 
Sbjct: 181 DMYVGSALIKMYADAGLLDGAREVFDGMDERDCVLWNVMMDGYVKAGDVASAVGLFRVMR 240

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
             G       LA  +S+C+   +L  G Q+H L +  G  E  V V+  L+ +Y+KC   
Sbjct: 241 ASGCDPNFATLACFLSVCAAEADLLSGVQLHTLAVKYG-LEPEVAVANTLVSMYAKCQCL 299

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             A R+F  M   + V+W  MISGC+ +   D  + LF  MQ+ G++P  VTL  +L A 
Sbjct: 300 EEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPAL 359

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
            EL   + GK IHGY        D  L +AL+ +Y +C + +  A+ +F+ TK  DVVI 
Sbjct: 360 TELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDIYFKCRD-VRMAQNVFDATKSIDVVIG 418

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           S++I GY  +     A+K+F  +    I+PN+V + + L +C   + +  G  +H Y++K
Sbjct: 419 STMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQELHGYVLK 478

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
                   + +ALM+MYSKCG +  SH +F++M+A+D V+W ++IS +  +G  EEAL L
Sbjct: 479 NAYEGRCYVESALMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDL 538

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
           F +M   GV+ + +T+ +ILSAC     +   + +   ++K   I   +   +  +D+ G
Sbjct: 539 FRQMIMEGVKYNNVTISSILSACAGLPAIYYGKEIHGIIIK-GPIRADLFAESALIDMYG 597

Query: 482 KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRL-EVAEMLAHQLIEAEPENAANYT 540
           K G +E A +V   MP K      +S++SA   HG + E  ++L    ++ E   A + T
Sbjct: 598 KCGNLELALRVFEHMPEKNEVS-WNSIISAYGAHGLVKESVDLLC--CMQEEGFKADHVT 654

Query: 541 LLSMV--CSESGNWLGAEEVWRVM 562
            L+++  C+ +G       ++R M
Sbjct: 655 FLALISACAHAGQVQEGLRLFRCM 678



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 95/341 (27%), Positives = 173/341 (50%), Gaps = 10/341 (2%)

Query: 132 LAGIISLCSQIGELELGRQIHALVIVDGSFELS----VFVSTALLDLYSKCHHWLIALRV 187
           L  ++  C     L LG +IHA  +  G  + +      + T L+ +Y     +  A+ V
Sbjct: 39  LLALLRGCVAPSHLPLGLRIHARAVTSGLLDAAGPGPAALQTRLVGMYVLARRFRDAVAV 98

Query: 188 FEQM---VIRNEVSWTAMISGCIDSQNYDTGIDLFRAM--QREGVKPTRVTLTIVLLACA 242
           F  +        + W  +I G   + ++   +  +  M       +P   TL  V+ +CA
Sbjct: 99  FSSLPRAAAAAALPWNWLIRGFTMAGHHRLAVLFYVKMWAHPSSPRPDGHTLPYVVKSCA 158

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
            L  L  G+ +H      G D D ++ +AL+ MY +    L  AR +F+    +D V+W+
Sbjct: 159 ALGALHLGRLVHRTTRALGLDRDMYVGSALIKMYAD-AGLLDGAREVFDGMDERDCVLWN 217

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
            ++ GY ++GD++ A+ LF  MR    +PN  TL   LS C  ++ L  G+ +H   +K 
Sbjct: 218 VMMDGYVKAGDVASAVGLFRVMRASGCDPNFATLACFLSVCAAEADLLSGVQLHTLAVKY 277

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
           GL  +V++ N L++MY+KC  +  + ++F  M   D V+W  +ISG   +G  ++AL+LF
Sbjct: 278 GLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLF 337

Query: 423 LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKE 463
            +MQ+SG++PD++T+ ++L A       K+ + +   +++ 
Sbjct: 338 CDMQKSGLQPDSVTLASLLPALTELNGFKQGKEIHGYIVRN 378



 Score = 39.7 bits (91), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 10/128 (7%)

Query: 331 PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNA-----LMNMYSKCGSIT 385
           P +  LLA+L  C   S L  GL +H   + +GL      G A     L+ MY       
Sbjct: 34  PCAYRLLALLRGCVAPSHLPLGLRIHARAVTSGLLDAAGPGPAALQTRLVGMYVLARRFR 93

Query: 386 SSHQIFNEMA---ARDFVSWTTLISGYGFHGYGEEALQLFLEM--QESGVEPDAITVLAI 440
            +  +F+ +    A   + W  LI G+   G+   A+  +++M    S   PD  T+  +
Sbjct: 94  DAVAVFSSLPRAAAAAALPWNWLIRGFTMAGHHRLAVLFYVKMWAHPSSPRPDGHTLPYV 153

Query: 441 LSACNHAG 448
           + +C   G
Sbjct: 154 VKSCAALG 161


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1005

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 192/548 (35%), Positives = 299/548 (54%), Gaps = 3/548 (0%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEM 89
           L +V+K CA +   +  G  +H  A++ G + D  IS  L+ MY+K      A ++F  +
Sbjct: 333 LSTVLKGCANSGNLRA-GQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRI 391

Query: 90  PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGR 149
              D +SW++II C  Q G    + E+F+ M   G +     LA ++S  + +G+L  G 
Sbjct: 392 EDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGE 451

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
            IHA V   G FE    V  AL+ +Y K        RVFE    R+ +SW A++SG  D+
Sbjct: 452 SIHACVCKYG-FEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDN 510

Query: 210 QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS 269
           +  DTG+ +F  M  EG  P   T   +L +C+ L D+  GK +H        D +  + 
Sbjct: 511 ETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVG 570

Query: 270 AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
            AL+ MY +    L  A  IF R   +D+  W+ I+ GY+Q G   +A+K F +M+ E +
Sbjct: 571 TALVDMYAK-NRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGV 629

Query: 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
           +PN  TL + LS C+R + L  G  +H   +KAG + D+ + +AL++MY+KCG +  +  
Sbjct: 630 KPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEV 689

Query: 390 IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL 449
           +F+ + +RD VSW T+I GY  HG G +AL+ F  M + G  PD +T + +LSAC+H GL
Sbjct: 690 VFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGL 749

Query: 450 VKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLV 509
           ++E +  FN++ K   I   IEHYAC VD+LG++GK  +    +  M +  +  I  +++
Sbjct: 750 IEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVL 809

Query: 510 SACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSK 569
            AC++HG +E  E  A +L E EPE  +NY LLS + +  G W     V  +M  +G+ K
Sbjct: 810 GACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKK 869

Query: 570 SYGFSRIE 577
             G S +E
Sbjct: 870 EPGCSWVE 877



 Score =  245 bits (626), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 165/537 (30%), Positives = 264/537 (49%), Gaps = 46/537 (8%)

Query: 33  VIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYR 92
           +++ CA ++   + G  +H   +KSG + D  + NSL+++YAK      A ++F E+P R
Sbjct: 134 MLRTCA-SKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPER 192

Query: 93  DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIH 152
           D +SW ++I  F   G+   ++ +F EM   G        A  +  CS   +LE G+Q+H
Sbjct: 193 DVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVH 252

Query: 153 ALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNY 212
           A  I  G F   +FV +AL+DLY+KC   ++A RVF  M  +N VSW A+++G     + 
Sbjct: 253 AEAIKVGDFS-DLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDA 311

Query: 213 DTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAAL 272
           +  ++LF  M    +  ++ TL+ VL  CA   +LR G+ +H  A   G + D  +S  L
Sbjct: 312 EKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCL 371

Query: 273 MHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPN 332
           + MY +C  A   A  +F R +  DVV WS+II    Q G   EA ++F RMR   + PN
Sbjct: 372 VDMYSKCGLA-GDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPN 430

Query: 333 SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFN 392
             TL +++S+ T    L +G  +H  + K G  +D ++ NAL+ MY K GS+    ++F 
Sbjct: 431 QFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFE 490

Query: 393 EMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN------- 445
               RD +SW  L+SG+  +   +  L++F +M   G  P+  T ++IL +C+       
Sbjct: 491 ATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDL 550

Query: 446 ----HAGLVK------------------------EAETLFNNVMKEKKIALAIEHYACYV 477
               HA +VK                        +AET+FN ++K    A  +      V
Sbjct: 551 GKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTV-----IV 605

Query: 478 DLLGKSGKIEDACKVVSTMP---MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA 531
               + G+ E A K    M    +KP+   L+S +S C     L+    L    I+A
Sbjct: 606 AGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKA 662



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 120/416 (28%), Positives = 208/416 (50%), Gaps = 11/416 (2%)

Query: 133 AGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV 192
           +G++  C+  G+L  G+ IH  VI  G       +  +L+++Y+KC     A +VF ++ 
Sbjct: 132 SGMLRTCASKGDLNEGKAIHGQVIKSG-INPDSHLWNSLVNVYAKCGSANYACKVFGEIP 190

Query: 193 IRNEVSWTAMISGCIDSQNYDTG-IDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGK 251
            R+ VSWTA+I+G + ++ Y +G ++LF  M+REGV+    T    L AC+   DL  GK
Sbjct: 191 ERDVVSWTALITGFV-AEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGK 249

Query: 252 AIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQS 311
            +H  A   G   D  + +AL+ +Y +C E +   R+     K ++ V W++++ G++Q 
Sbjct: 250 QVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPK-QNAVSWNALLNGFAQM 308

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
           GD  + + LF RM    I  +  TL  +L  C     L  G  VH   ++ G   D  I 
Sbjct: 309 GDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFIS 368

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
             L++MYSKCG    + ++F  +   D VSW+ +I+     G   EA ++F  M+ SGV 
Sbjct: 369 CCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVI 428

Query: 432 PDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC--YVDLLGKSGKIEDA 489
           P+  T+ +++SA    G +   E++   V    K     ++  C   V +  K G ++D 
Sbjct: 429 PNQFTLASLVSAATDLGDLYYGESIHACVC---KYGFEYDNTVCNALVTMYMKIGSVQDG 485

Query: 490 CKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV 545
           C+V      +      ++L+S    +   +    + +Q++ AE  N   YT +S++
Sbjct: 486 CRVFEATTNRDLIS-WNALLSGFHDNETCDTGLRIFNQML-AEGFNPNMYTFISIL 539


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 190/570 (33%), Positives = 319/570 (55%), Gaps = 4/570 (0%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           ++   L++Q +   GL  +     SV+ AC+ +    ++G ++H   + +G  +D  I  
Sbjct: 140 KEAFALFRQ-MVDEGLEPSIITFLSVLDACS-SPAGLNWGKEVHAQVVTAGFVSDFRIGT 197

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +L+SMY K    + A Q+FD +  RD  ++N ++  + ++G + ++ E+F  M   G   
Sbjct: 198 ALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKP 257

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
                  I+  C     L  G+ +HA  +  G  +  + V+T+L+ +Y+ C     A RV
Sbjct: 258 NKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVD-DIRVATSLIRMYTTCGSIEGARRV 316

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F+ M +R+ VSWT MI G  ++ N +    LF  MQ EG++P R+T   ++ ACA   +L
Sbjct: 317 FDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANL 376

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
            + + IH      GF  D  +S AL+HMY +C  A+  AR +F+    +DVV WS++I  
Sbjct: 377 NHAREIHSQVDIAGFGTDLLVSTALVHMYAKCG-AIKDARQVFDAMPRRDVVSWSAMIGA 435

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
           Y ++G  +EA + F  M+   IEP+ VT + +L++C     L  G+ ++   +KA L   
Sbjct: 436 YVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSH 495

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
           V +GNAL+ M +K GS+  +  IF+ M  RD ++W  +I GY  HG   EAL LF  M +
Sbjct: 496 VPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDRMLK 555

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487
               P+++T + +LSAC+ AG V E    F  +++ + I   ++ Y C VDLLG++G+++
Sbjct: 556 ERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGELD 615

Query: 488 DACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCS 547
           +A  ++ +MP+KP++ I SSL+ ACRIHG L+VAE  A + +  +P + A Y  LS + +
Sbjct: 616 EAELLIKSMPVKPTSSIWSSLLVACRIHGNLDVAERAAERCLMIDPYDGAVYVQLSHMYA 675

Query: 548 ESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +G W    +V +VM ++G+ K  G + IE
Sbjct: 676 AAGMWENVAKVRKVMESRGIRKEQGCTWIE 705



 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 143/506 (28%), Positives = 261/506 (51%), Gaps = 5/506 (0%)

Query: 46  FGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT 105
            G Q+    ++ G   +    N+LI +Y+       A Q+FD +  +  ++WN++I  + 
Sbjct: 75  LGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYA 134

Query: 106 QNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSV 165
           Q G    +  +FR+M   G          ++  CS    L  G+++HA V+  G F    
Sbjct: 135 QVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAG-FVSDF 193

Query: 166 FVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
            + TAL+ +Y K      A +VF+ + IR+  ++  M+ G   S +++   +LF  MQ+ 
Sbjct: 194 RIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQV 253

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
           G+KP +++   +L  C     L  GKA+H      G   D  ++ +L+ MY  C  ++  
Sbjct: 254 GLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCG-SIEG 312

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           AR +F+  KV+DVV W+ +I GY+++G++ +A  LF+ M+ E I+P+ +T + I+++C  
Sbjct: 313 ARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAI 372

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
            + L+H   +H  +  AG   D+ +  AL++MY+KCG+I  + Q+F+ M  RD VSW+ +
Sbjct: 373 SANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAM 432

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           I  Y  +GYG EA + F  M+ S +EPD +T + +L+AC H G +     ++   +K   
Sbjct: 433 IGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADL 492

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
           ++      A  + +  K G +E A  +  TM ++      ++++    +HG    A  L 
Sbjct: 493 VSHVPLGNALII-MNAKHGSVERARYIFDTM-VRRDVITWNAMIGGYSLHGNAREALYLF 550

Query: 526 HQLI-EAEPENAANYTLLSMVCSESG 550
            +++ E    N+  +  +   CS +G
Sbjct: 551 DRMLKERFRPNSVTFVGVLSACSRAG 576



 Score =  212 bits (539), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 117/361 (32%), Positives = 195/361 (54%), Gaps = 3/361 (0%)

Query: 139 CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
           C+++ +  LG+Q+   +I  G  +L+++    L+ LYS C +   A ++F+ +  +  V+
Sbjct: 67  CTELRDAALGKQVRDHII-QGGRQLNIYELNTLIKLYSICGNVTEARQIFDSVENKTVVT 125

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258
           W A+I+G     +      LFR M  EG++P+ +T   VL AC+    L  GK +H    
Sbjct: 126 WNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVV 185

Query: 259 CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAM 318
             GF  D  +  AL+ MY +   ++  AR +F+   ++DV  ++ ++ GY++SGD  +A 
Sbjct: 186 TAGFVSDFRIGTALVSMYVKGG-SMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAF 244

Query: 319 KLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMY 378
           +LF RM+   ++PN ++ L+IL  C     L+ G  VH   M AGL  D+ +  +L+ MY
Sbjct: 245 ELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMY 304

Query: 379 SKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
           + CGSI  + ++F+ M  RD VSWT +I GY  +G  E+A  LF  MQE G++PD IT +
Sbjct: 305 TTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYM 364

Query: 439 AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPM 498
            I++AC  +  +  A  + + V         +      V +  K G I+DA +V   MP 
Sbjct: 365 HIMNACAISANLNHAREIHSQV-DIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPR 423

Query: 499 K 499
           +
Sbjct: 424 R 424



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/329 (30%), Positives = 162/329 (49%), Gaps = 50/329 (15%)

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
           C ELRD   GK +  +    G   + +    L+ +Y  C   +  AR IF+  + K VV 
Sbjct: 67  CTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGN-VTEARQIFDSVENKTVVT 125

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           W+++I GY+Q G + EA  LF +M  E +EP+ +T L++L +C+  + L+ G  VH  ++
Sbjct: 126 WNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVV 185

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
            AG   D  IG AL++MY K GS+  + Q+F+ +  RD  ++  ++ GY   G  E+A +
Sbjct: 186 TAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFE 245

Query: 421 LFLEMQESGVEPDAITVLAILSA----------------CNHAGLVKE------------ 452
           LF  MQ+ G++P+ I+ L+IL                  C +AGLV +            
Sbjct: 246 LFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYT 305

Query: 453 -------AETLFNNVMKEKKI---ALAIEHYACYVDLLGKSGKIEDACKVVSTMP---MK 499
                  A  +F+N MK + +    + IE YA       ++G IEDA  + +TM    ++
Sbjct: 306 TCGSIEGARRVFDN-MKVRDVVSWTVMIEGYA-------ENGNIEDAFGLFATMQEEGIQ 357

Query: 500 PSTRILSSLVSACRIHGRLEVAEMLAHQL 528
           P       +++AC I   L  A  +  Q+
Sbjct: 358 PDRITYMHIMNACAISANLNHAREIHSQV 386



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 93/173 (53%), Gaps = 11/173 (6%)

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIF 391
           +S T + +   CT     + G  V  +I++ G   ++   N L+ +YS CG++T + QIF
Sbjct: 56  DSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIF 115

Query: 392 NEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH-AGLV 450
           + +  +  V+W  LI+GY   G+ +EA  LF +M + G+EP  IT L++L AC+  AGL 
Sbjct: 116 DSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLN 175

Query: 451 --KE--AETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
             KE  A+ +    + + +I  A+      V +  K G ++DA +V   + ++
Sbjct: 176 WGKEVHAQVVTAGFVSDFRIGTAL------VSMYVKGGSMDDARQVFDGLHIR 222


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 187/575 (32%), Positives = 327/575 (56%), Gaps = 6/575 (1%)

Query: 6   FYEQTLHLYKQEL-HPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPV 64
           F +++ + +++ L        + A L +V+  CA  +  +  G+ +H  A+K G + + +
Sbjct: 182 FLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEK-GMAVHGLAVKLGLNEELM 240

Query: 65  ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG 124
           ++NSLI MY+K      A  LFD+   ++ +SWNS+I  + +     R+  + ++M    
Sbjct: 241 VNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTED 300

Query: 125 FVLKAE--LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL 182
             +KA+   +  ++ +C +  EL+  +++H      G  + +  V+ A +  Y++C    
Sbjct: 301 AKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHG-LQSNELVANAFIAAYTRCGALC 359

Query: 183 IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
            + RVF+ M  +   SW A++ G   + +    +DL+  M   G+ P   T+  +LLAC+
Sbjct: 360 SSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACS 419

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
            ++ L  G+ IHG+A   G   D  +  +L+ +Y  C +    A+++F+  + + +V W+
Sbjct: 420 RMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPF-AAQVLFDGMEHRSLVSWN 478

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
            +I GYSQ+G   EA+ LF +M  + I+P  + ++ +  +C++ S L  G  +HC+ +KA
Sbjct: 479 VMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKA 538

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
            L  D+ + +++++MY+K G I  S +IF+ +  +D  SW  +I+GYG HG G+EAL+LF
Sbjct: 539 HLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELF 598

Query: 423 LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGK 482
            +M   G++PD  T   IL AC+HAGLV++    FN ++    I   +EHY C VD+LG+
Sbjct: 599 EKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGR 658

Query: 483 SGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLL 542
           +G+I+DA +++  MP  P +RI SSL+S+CRIHG L + E +A++L+E EPE   NY L+
Sbjct: 659 AGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLI 718

Query: 543 SMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           S + + SG W     V   M+  GL K  G S IE
Sbjct: 719 SNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIE 753



 Score =  236 bits (601), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 157/552 (28%), Positives = 276/552 (50%), Gaps = 10/552 (1%)

Query: 4   KHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADP 63
              +E  + ++ + +  +    +   LP VIKACA        G  +H  A K    +D 
Sbjct: 78  NELFEDAMSIFSELISVTEHKPDNFTLPCVIKACA-GLLDLGLGQIIHGMATKMDLVSDV 136

Query: 64  VISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC 123
            + N+LI+MY K    E A ++F+ MP R+ +SWNSII  F++NGF   S   FREM + 
Sbjct: 137 FVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVG 196

Query: 124 --GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
              FV     L  ++ +C+   ++E G  +H L +  G  E  + V+ +L+D+YSKC   
Sbjct: 197 EESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNE-ELMVNNSLIDMYSKCRFL 255

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTI--VLL 239
             A  +F++   +N VSW +MI G    ++      L + MQ E  K      TI  VL 
Sbjct: 256 SEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLP 315

Query: 240 ACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVV 299
            C E  +L++ K +HGY++  G   +  ++ A +  Y  C  AL  +  +F+    K V 
Sbjct: 316 VCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCG-ALCSSERVFDLMDTKTVS 374

Query: 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
            W++++ GY+Q+ D  +A+ L+ +M    ++P+  T+ ++L +C+R   L +G  +H + 
Sbjct: 375 SWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFA 434

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEAL 419
           ++ GL  D  IG +L+++Y  CG   ++  +F+ M  R  VSW  +I+GY  +G  +EA+
Sbjct: 435 LRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAI 494

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479
            LF +M   G++P  I ++ +  AC+    ++  + L    +K   +   I   +  +D+
Sbjct: 495 NLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALK-AHLTEDIFVSSSIIDM 553

Query: 480 LGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGR-LEVAEMLAHQLIEAEPENAAN 538
             K G I  + ++   +  K      + +++   IHGR  E  E+    L      +   
Sbjct: 554 YAKGGCIGLSQRIFDRLREKDVAS-WNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFT 612

Query: 539 YTLLSMVCSESG 550
           +T + M CS +G
Sbjct: 613 FTGILMACSHAG 624



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 116/390 (29%), Positives = 208/390 (53%), Gaps = 7/390 (1%)

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D V++  +I+MY+    P  +  +FD++  ++   WN+I++ +T+N  +  ++ +F E+ 
Sbjct: 33  DFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELI 92

Query: 122 -LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
            +         L  +I  C+ + +L LG+ IH +          VFV  AL+ +Y KC  
Sbjct: 93  SVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMA-TKMDLVSDVFVGNALIAMYGKCGL 151

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM--QREGVKPTRVTLTIVL 238
              A++VFE M  RN VSW ++I G  ++       + FR M    E   P   TL  VL
Sbjct: 152 VEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVL 211

Query: 239 LACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDV 298
             CA   D+  G A+HG A   G + +  ++ +L+ MY +C   L  A+++F++   K++
Sbjct: 212 PVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKC-RFLSEAQLLFDKNDKKNI 270

Query: 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLE--RIEPNSVTLLAILSSCTRQSFLSHGLGVH 356
           V W+S+I GY++  D+     L  +M+ E  +++ +  T+L +L  C  +S L     +H
Sbjct: 271 VSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELH 330

Query: 357 CYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGE 416
            Y  + GL  +  + NA +  Y++CG++ SS ++F+ M  +   SW  L+ GY  +    
Sbjct: 331 GYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPR 390

Query: 417 EALQLFLEMQESGVEPDAITVLAILSACNH 446
           +AL L+L+M +SG++PD  T+ ++L AC+ 
Sbjct: 391 KALDLYLQMTDSGLDPDWFTIGSLLLACSR 420



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 164/315 (52%), Gaps = 6/315 (1%)

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           ++  C Q  ++E+GR++H +V     F     ++T ++ +YS C     +  VF+++  +
Sbjct: 4   LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 63

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAM-QREGVKPTRVTLTIVLLACAELRDLRNGKAI 253
           N   W A++S    ++ ++  + +F  +      KP   TL  V+ ACA L DL  G+ I
Sbjct: 64  NLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQII 123

Query: 254 HGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGD 313
           HG A       D  +  AL+ MY +C   +  A  +FE    +++V W+SII G+S++G 
Sbjct: 124 HGMATKMDLVSDVFVGNALIAMYGKCG-LVEEAVKVFEHMPERNLVSWNSIICGFSENGF 182

Query: 314 LSEAMKLFSRMRL--ERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
           L E+   F  M +  E   P+  TL+ +L  C  +  +  G+ VH   +K GLN ++ + 
Sbjct: 183 LQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVN 242

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ--ESG 429
           N+L++MYSKC  ++ +  +F++   ++ VSW ++I GY           L  +MQ  ++ 
Sbjct: 243 NSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAK 302

Query: 430 VEPDAITVLAILSAC 444
           ++ D  T+L +L  C
Sbjct: 303 MKADEFTILNVLPVC 317



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 117/217 (53%), Gaps = 9/217 (4%)

Query: 234 LTIVLLACAELRDLRNGKAIHG-YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFER 292
           + ++L AC + +D+  G+ +H   +    F  D  L+  ++ MY  C      +R++F++
Sbjct: 1   MGVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSP-SDSRMVFDK 59

Query: 293 TKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM-RLERIEPNSVTLLAILSSCTRQSFLSH 351
            + K++  W++I+  Y+++    +AM +FS +  +   +P++ TL  ++ +C     L  
Sbjct: 60  LRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACA--GLLDL 117

Query: 352 GLG--VHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGY 409
           GLG  +H    K  L  DV +GNAL+ MY KCG +  + ++F  M  R+ VSW ++I G+
Sbjct: 118 GLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGF 177

Query: 410 GFHGYGEEALQLFLEM--QESGVEPDAITVLAILSAC 444
             +G+ +E+   F EM   E    PD  T++ +L  C
Sbjct: 178 SENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVC 214


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 189/598 (31%), Positives = 319/598 (53%), Gaps = 39/598 (6%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           + +  + +  N     S++KAC      +  G ++H      G + D  ++ +LI+MY+K
Sbjct: 146 ERMTDANIEPNRITFLSILKACNNYSILEK-GRKIHTIVKAMGMETDVAVATALITMYSK 204

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
             +   A ++F +M  R+ +SW +II    Q+     + E++ +M   G    A     +
Sbjct: 205 CGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSL 264

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           ++ C+    L  GR+IH+ +   G  E  + V+ AL+ +Y KC+    A  +F++M  R+
Sbjct: 265 LNSCNTPEALNRGRRIHSHISERG-LETDMIVANALITMYCKCNSVQEAREIFDRMSKRD 323

Query: 196 EVSWTAMI-----SGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNG 250
            +SW+AMI     SG  D ++ D    L   M+REGV P +VT   +L AC     L  G
Sbjct: 324 VISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQG 383

Query: 251 KAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS------- 303
           + IH      GF+ D  L  A+ +MY +C  +++ A  +F +   K+VV W+S       
Sbjct: 384 RQIHAELSKVGFELDRSLQTAIFNMYAKCG-SIYEAEQVFSKMANKNVVAWTSFLSMYIK 442

Query: 304 ------------------------IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAI 339
                                   +I GY+Q+GD+ +  +L S M+ E  +P+ VT++ I
Sbjct: 443 CGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITI 502

Query: 340 LSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDF 399
           L +C   + L  G  VH   +K GL  D  +  +L+ MYSKCG +  +  +F++M+ RD 
Sbjct: 503 LEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDT 562

Query: 400 VSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNN 459
           V+W  +++GYG HG G EA+ LF  M +  V P+ IT+ A++SAC+ AGLV+E   +F  
Sbjct: 563 VAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRM 622

Query: 460 VMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLE 519
           + ++ K+    +HY C VDLLG++G++++A + + +MP +P   +  +L+ AC+ H  ++
Sbjct: 623 MQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQ 682

Query: 520 VAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +AE  AH ++E EP  A+ Y  LS + +++G W  + +V RVM  +GL K  G S IE
Sbjct: 683 LAERAAHHILELEPSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSIE 740



 Score =  272 bits (696), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 182/597 (30%), Positives = 287/597 (48%), Gaps = 56/597 (9%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           Q L + KQ     GL  N+     VI+ CA A+  +  G  +H    + G + D  + NS
Sbjct: 42  QLLGIIKQR----GLLVNSNTYGCVIEHCAKARRFED-GKMVHKQLDELGVEIDIYLGNS 96

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           LI+ Y+KF    SA Q+F  M  RD ++W+S+I  +  N    ++ + F  M        
Sbjct: 97  LINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPN 156

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
                 I+  C+    LE GR+IH +V   G  E  V V+TAL+ +YSKC    +A  VF
Sbjct: 157 RITFLSILKACNNYSILEKGRKIHTIVKAMG-METDVAVATALITMYSKCGEISVACEVF 215

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
            +M  RN VSWTA+I      +  +   +L+  M + G+ P  VT   +L +C     L 
Sbjct: 216 HKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALN 275

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
            G+ IH +    G + D  ++ AL+ MYC+C  ++  AR IF+R   +DV+ WS++I GY
Sbjct: 276 RGRRIHSHISERGLETDMIVANALITMYCKCN-SVQEAREIFDRMSKRDVISWSAMIAGY 334

Query: 309 SQSG-----DLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           +QSG      + E  +L  RMR E + PN VT ++IL +CT    L  G  +H  + K G
Sbjct: 335 AQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVG 394

Query: 364 LNFDVSIGNALMNMYSKCGSI-------------------------------TSSHQIFN 392
              D S+  A+ NMY+KCGSI                               +S+ ++F+
Sbjct: 395 FELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFS 454

Query: 393 EMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH-AGLVK 451
           EM  R+ VSW  +I+GY  +G   +  +L   M+  G +PD +TV+ IL AC   AGL +
Sbjct: 455 EMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLER 514

Query: 452 ----EAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSS 507
                AE +   +  +  +A ++      + +  K G++ +A  V   M  +  T   ++
Sbjct: 515 GKLVHAEAVKLGLESDTVVATSL------IGMYSKCGQVAEARTVFDKMSNR-DTVAWNA 567

Query: 508 LVSACRIHGR-LEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMR 563
           +++    HG  LE  ++    L E    N    T +   CS +G      E++R+M+
Sbjct: 568 MLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQ 624



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 130/231 (56%), Gaps = 1/231 (0%)

Query: 215 GIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMH 274
            I L   +++ G+     T   V+  CA+ R   +GK +H      G + D +L  +L++
Sbjct: 40  AIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLIN 99

Query: 275 MYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSV 334
            Y +  E +  A  +F R  ++DVV WSS+I  Y+ +   ++A   F RM    IEPN +
Sbjct: 100 FYSK-FEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRI 158

Query: 335 TLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEM 394
           T L+IL +C   S L  G  +H  +   G+  DV++  AL+ MYSKCG I+ + ++F++M
Sbjct: 159 TFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKM 218

Query: 395 AARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
             R+ VSWT +I     H    EA +L+ +M ++G+ P+A+T +++L++CN
Sbjct: 219 TERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCN 269



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 123/242 (50%), Gaps = 9/242 (3%)

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
           ++G L EA++L   ++   +  NS T   ++  C +      G  VH  + + G+  D+ 
Sbjct: 33  KAGRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIY 92

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
           +GN+L+N YSK   + S+ Q+F  M  RD V+W+++I+ Y  + +  +A   F  M ++ 
Sbjct: 93  LGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDAN 152

Query: 430 VEPDAITVLAILSACNHAGLVKEAE---TLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
           +EP+ IT L+IL ACN+  ++++     T+   +  E  +A+A       + +  K G+I
Sbjct: 153 IEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVA----TALITMYSKCGEI 208

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE-PENAANYTLLSMV 545
             AC+V   M  +      ++++ A   H +L  A  L  Q+++A    NA  +  L   
Sbjct: 209 SVACEVFHKMTERNVVS-WTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNS 267

Query: 546 CS 547
           C+
Sbjct: 268 CN 269


>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Vitis vinifera]
          Length = 825

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 191/568 (33%), Positives = 321/568 (56%), Gaps = 5/568 (0%)

Query: 10  TLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSL 69
           +L L+ Q +  + +  +  ++ SV+ AC+  +  +  G Q+H   L+ G++ D  + N L
Sbjct: 214 SLELFAQ-MRETNVVPDRYVVSSVLSACSMLEFLEG-GKQIHAYVLRRGTEMDVSVVNVL 271

Query: 70  ISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKA 129
           I  Y K ++ ++  +LFD+M  ++ ISW ++I+ + QN F   ++++F EM   G+    
Sbjct: 272 IDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDG 331

Query: 130 ELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
                +++ C     LE GRQ+HA  I   + E   FV   L+D+Y+K +  + A +VF+
Sbjct: 332 FACTSVLTSCGSREALEQGRQVHAYTI-KANLESDEFVKNGLIDMYAKSNLLIDAKKVFD 390

Query: 190 QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
            M  +N +S+ AMI G    +     ++LF  M+     P+ +T   +L   A L  L  
Sbjct: 391 VMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALEL 450

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
            K IHG     G   D    +AL+ +Y +C+  +  AR +FE    KD+V+W+++  GY+
Sbjct: 451 SKQIHGLIIKFGVSLDLFAGSALIDVYSKCS-YVKDARHVFEEMNEKDIVVWNAMFFGYT 509

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
           Q  +  EA+KL+S ++  R +PN  T  A++++ +  + L HG   H  ++K GL+F   
Sbjct: 510 QHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPF 569

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
           + NAL++MY+KCGSI  + ++FN    RD V W ++IS +  HG  EEAL +F EM + G
Sbjct: 570 VTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEG 629

Query: 430 VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
           ++P+ +T +A+LSAC+HAG V++    FN+ M    I    EHYAC V LLG+SGK+ +A
Sbjct: 630 IQPNYVTFVAVLSACSHAGRVEDGLNHFNS-MPGFGIKPGTEHYACVVSLLGRSGKLFEA 688

Query: 490 CKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSES 549
            + +  MP++P+  +  SL+SACRI G +E+ +  A   I  +P+++ +Y LLS + +  
Sbjct: 689 KEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASK 748

Query: 550 GNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           G W   ++V   M +  + K  G S IE
Sbjct: 749 GMWADVKKVRDRMDSSEVVKEPGRSWIE 776



 Score =  262 bits (670), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 168/554 (30%), Positives = 283/554 (51%), Gaps = 11/554 (1%)

Query: 1   MVSKHFY-EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGS 59
           M S+  Y E+ L ++      SG + N  +L SVI+AC      +  G QLH   ++SG 
Sbjct: 102 MYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEK-GAQLHGFVVRSGF 160

Query: 60  DADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFRE 119
           D D  +  SLI  Y+K    E A  +FD++  +  ++W +II  +T+ G    SLE+F +
Sbjct: 161 DQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQ 220

Query: 120 MYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH 179
           M     V    +++ ++S CS +  LE G+QIHA V+  G+ E+ V V   L+D Y+KC+
Sbjct: 221 MRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGT-EMDVSVVNVLIDFYTKCN 279

Query: 180 HWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLL 239
                 ++F+QMV++N +SWT MISG + +      + LF  M R G KP     T VL 
Sbjct: 280 RVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLT 339

Query: 240 ACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVV 299
           +C     L  G+ +H Y      + D  +   L+ MY + +  L  A+ +F+    ++V+
Sbjct: 340 SCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAK-SNLLIDAKKVFDVMAEQNVI 398

Query: 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
            ++++I GYS    LSEA++LF  MR+    P+ +T +++L        L     +H  I
Sbjct: 399 SYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLI 458

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEAL 419
           +K G++ D+  G+AL+++YSKC  +  +  +F EM  +D V W  +  GY  H   EEAL
Sbjct: 459 IKFGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEAL 518

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYA--CYV 477
           +L+  +Q S  +P+  T  A+++A ++   ++  +   N ++   K+ L    +     V
Sbjct: 519 KLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLV---KMGLDFCPFVTNALV 575

Query: 478 DLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA-EMLAHQLIEAEPENA 536
           D+  K G IE+A K+ ++   +      +S++S    HG  E A  M    + E    N 
Sbjct: 576 DMYAKCGSIEEARKMFNSSIWR-DVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNY 634

Query: 537 ANYTLLSMVCSESG 550
             +  +   CS +G
Sbjct: 635 VTFVAVLSACSHAG 648



 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 133/451 (29%), Positives = 242/451 (53%), Gaps = 4/451 (0%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           +H   + SG  +D  ++N LI++ +K  + ++A  +FD+MP+++ I+W+S+++ ++Q G+
Sbjct: 49  IHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGY 108

Query: 110 YVRSLEMFREMYL-CGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
              +L +F ++    G      +LA +I  C+Q+G +E G Q+H  V+  G F+  V+V 
Sbjct: 109 SEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSG-FDQDVYVG 167

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
           T+L+D YSK  +   A  VF+Q+  +  V+WT +I+G          ++LF  M+   V 
Sbjct: 168 TSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVV 227

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
           P R  ++ VL AC+ L  L  GK IH Y    G + D  +   L+  Y +C   +   R 
Sbjct: 228 PDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNR-VKAGRK 286

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
           +F++  VK+++ W+++I GY Q+    EAMKLF  M     +P+     ++L+SC  +  
Sbjct: 287 LFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREA 346

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
           L  G  VH Y +KA L  D  + N L++MY+K   +  + ++F+ MA ++ +S+  +I G
Sbjct: 347 LEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEG 406

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468
           Y       EAL+LF EM+     P  +T +++L        ++ ++ +   ++K   ++L
Sbjct: 407 YSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIK-FGVSL 465

Query: 469 AIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
            +   +  +D+  K   ++DA  V   M  K
Sbjct: 466 DLFAGSALIDVYSKCSYVKDARHVFEEMNEK 496



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 116/230 (50%), Gaps = 12/230 (5%)

Query: 324 MRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS 383
           +++  + P       +L     ++ + H   +H  I+ +GL  D  + N L+N+ SK   
Sbjct: 18  LQIPNLRPKRREFANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILINVCSKSDR 77

Query: 384 ITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ-ESGVEPDAITVLAILS 442
           + ++  +F++M  ++ ++W++++S Y   GY EEAL +F+++Q +SG  P+   + +++ 
Sbjct: 78  VDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIR 137

Query: 443 ACNHAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           AC   G+V++   L   V++   ++ + +        +D   K+G IE+A  V   +  K
Sbjct: 138 ACTQLGVVEKGAQLHGFVVRSGFDQDVYVG----TSLIDFYSKNGNIEEARLVFDQLSEK 193

Query: 500 PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE--PENAANYTLLSMVCS 547
            +    +++++     GR  V+  L  Q+ E    P+     ++LS  CS
Sbjct: 194 TAV-TWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLS-ACS 241


>gi|297814636|ref|XP_002875201.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297814638|ref|XP_002875202.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321039|gb|EFH51460.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321040|gb|EFH51461.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 708

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 184/565 (32%), Positives = 319/565 (56%), Gaps = 7/565 (1%)

Query: 18  LHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFS 77
           L   G   +  +    +KAC   Q   + G ++HC  +K  S  D V+   L+ MYAK  
Sbjct: 145 LMKHGFGYDDIVFSKALKACTEVQDLDN-GKKIHCQIVKVPS-FDNVVLTGLLDMYAKCG 202

Query: 78  KPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS 137
           + +S+Y++F+++  R+ + W S+I  + +N  Y   L +F  M     +        ++ 
Sbjct: 203 EIKSSYKVFEDITLRNVVCWTSMIAGYVKNDLYEEGLVLFNRMRENSVLGNEYTYGTLVM 262

Query: 138 LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197
            C+++  L  G+  H  +I  G  ELS  + T+LLD+Y KC     A RVF +    + V
Sbjct: 263 ACTKLRALHQGKWFHGCLIKSG-IELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLV 321

Query: 198 SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
            WTAMI G   + + +  + LF+ M   G+KP  VT+  VL  C  + +L  G++IHG +
Sbjct: 322 MWTAMIVGYTHNGSVNEALSLFQKMSGVGIKPNCVTIASVLSGCGLVGNLELGRSIHGLS 381

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
              G  +D +++ AL+HMY +C +    A+ +FE    KD+V W+SII G+SQ+G + EA
Sbjct: 382 IKVGI-WDTNVANALVHMYAKCYQN-RDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEA 439

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL--NFDVSIGNALM 375
           + LF RM  E + PN VT+ ++ S+C     L+ G  +H Y +K G   +  V +G AL+
Sbjct: 440 LFLFHRMNTESVMPNGVTVASLFSACASLGSLAIGSSLHAYSVKLGFLASSSVHVGTALL 499

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           + Y+KCG   S+  IF+ +  ++ ++W+ +I GYG  G  + +L+LF EM +   +P+  
Sbjct: 500 DFYAKCGDAESARLIFDTIEEKNTITWSAMIGGYGKQGDTKGSLELFEEMLKKQQKPNES 559

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           T  ++LSAC+H G+V E +  F+++ K+     + +HY C VD+L ++G++E A  ++  
Sbjct: 560 TFTSVLSACSHTGMVNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEK 619

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGA 555
           MP++P  R   + +  C +H R ++ E++  ++++  P++A+ Y L+S + +  G W  A
Sbjct: 620 MPIQPDVRCFGAFLHGCGMHSRFDLGEIVIKKMLDLHPDDASYYVLVSNLYASDGRWSQA 679

Query: 556 EEVWRVMRAKGLSKSYGFSRIENEY 580
           +EV  +M+ +GLSK  G S +E+E+
Sbjct: 680 KEVRNLMKQRGLSKIAGHSIMESEF 704



 Score =  238 bits (607), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 147/504 (29%), Positives = 257/504 (50%), Gaps = 7/504 (1%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           Q H     +G   D  I+  L+S+Y  F   + A  +FD++P  D   W  I+ C+  N 
Sbjct: 74  QAHGVLTGNGLMGDISIATKLVSLYGSFGYTKDARLVFDQIPEPDFYLWKVILRCYCLNN 133

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
                ++ +  +   GF     + +  +  C+++ +L+ G++IH  ++   SF+  V   
Sbjct: 134 ESFEVIKFYDLLMKHGFGYDDIVFSKALKACTEVQDLDNGKKIHCQIVKVPSFDNVVL-- 191

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
           T LLD+Y+KC     + +VFE + +RN V WT+MI+G + +  Y+ G+ LF  M+   V 
Sbjct: 192 TGLLDMYAKCGEIKSSYKVFEDITLRNVVCWTSMIAGYVKNDLYEEGLVLFNRMRENSVL 251

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
               T   +++AC +LR L  GK  HG     G +    L  +L+ MY +C +  +  R+
Sbjct: 252 GNEYTYGTLVMACTKLRALHQGKWFHGCLIKSGIELSSCLVTSLLDMYVKCGDISNARRV 311

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
             E + V D+V+W+++I GY+ +G ++EA+ LF +M    I+PN VT+ ++LS C     
Sbjct: 312 FNEHSHV-DLVMWTAMIVGYTHNGSVNEALSLFQKMSGVGIKPNCVTIASVLSGCGLVGN 370

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
           L  G  +H   +K G+ +D ++ NAL++MY+KC     +  +F   + +D V+W ++ISG
Sbjct: 371 LELGRSIHGLSIKVGI-WDTNVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISG 429

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468
           +  +G   EAL LF  M    V P+ +TV ++ SAC   G +    +L    +K   +A 
Sbjct: 430 FSQNGSIHEALFLFHRMNTESVMPNGVTVASLFSACASLGSLAIGSSLHAYSVKLGFLAS 489

Query: 469 AIEHYA-CYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA-EMLAH 526
           +  H     +D   K G  E A  +  T+  K +T   S+++      G  + + E+   
Sbjct: 490 SSVHVGTALLDFYAKCGDAESARLIFDTIEEK-NTITWSAMIGGYGKQGDTKGSLELFEE 548

Query: 527 QLIEAEPENAANYTLLSMVCSESG 550
            L + +  N + +T +   CS +G
Sbjct: 549 MLKKQQKPNESTFTSVLSACSHTG 572


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 182/500 (36%), Positives = 290/500 (58%), Gaps = 23/500 (4%)

Query: 78  KPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS 137
           +PESA++LFD++  RD ISWNS+I+ +  NG   R L ++++M   G  +    +  ++ 
Sbjct: 200 RPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLV 259

Query: 138 LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197
            C+  G L LG+ +H+L I   SFE  +  S  LLD+YSKC     ALRVFE+M  RN V
Sbjct: 260 GCANSGTLSLGKAVHSLAI-KSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVV 318

Query: 198 SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
           SWT+MI+G       D  I L + M++EGVK   V +T +L ACA    L NGK +H Y 
Sbjct: 319 SWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYI 378

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
                + +  +  ALM MY +C  ++  A  +F    VKD++ W+++I      G+L   
Sbjct: 379 KANNMESNLFVCNALMDMYAKCG-SMEAANSVFSTMVVKDIISWNTMI------GEL--- 428

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
                       +P+S T+  +L +C   S L  G  +H YI++ G + D  + NAL+++
Sbjct: 429 ------------KPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDL 476

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           Y KCG +  +  +F+ + ++D VSWT +I+GYG HGYG EA+  F EM+++G+EPD ++ 
Sbjct: 477 YVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSF 536

Query: 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
           ++IL AC+H+GL+++    F  +  +  I   +EHYAC VDLL ++G +  A + + T+P
Sbjct: 537 ISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLP 596

Query: 498 MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEE 557
           + P   I  +L+  CR +  +E+AE +A ++ E EPEN+  Y LL+ + +E+  W   + 
Sbjct: 597 IAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENSGYYVLLANIYAEAEKWEEVKR 656

Query: 558 VWRVMRAKGLSKSYGFSRIE 577
           +   +  +GL K+ G S IE
Sbjct: 657 LREKIGKQGLRKNPGCSWIE 676



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 123/410 (30%), Positives = 213/410 (51%), Gaps = 29/410 (7%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           VS    E+ L +YKQ ++  G+  + A + SV+  CA + T    G  +H  A+KS  + 
Sbjct: 227 VSNGLTERGLGIYKQMMY-LGIDVDLATIISVLVGCANSGTLS-LGKAVHSLAIKSSFER 284

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
               SN+L+ MY+K    + A ++F++M  R+ +SW S+I  +T++G    ++++ ++M 
Sbjct: 285 RINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQME 344

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
             G  L    +  I+  C++ G L+ G+ +H  +  + + E ++FV  AL+D+Y+KC   
Sbjct: 345 KEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKAN-NMESNLFVCNALMDMYAKCGSM 403

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             A  VF  MV+++ +SW  MI                       +KP   T+  VL AC
Sbjct: 404 EAANSVFSTMVVKDIISWNTMIG---------------------ELKPDSRTMACVLPAC 442

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A L  L  GK IHGY    G+  D H++ AL+ +Y +C   L  AR++F+    KD+V W
Sbjct: 443 ASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCG-VLGLARLLFDMIPSKDLVSW 501

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           + +I GY   G  +EA+  F+ MR   IEP+ V+ ++IL +C+    L  G     YIMK
Sbjct: 502 TVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFF-YIMK 560

Query: 362 AGLNFDVSIGN--ALMNMYSKCGSITSSHQIFNEMA-ARDFVSWTTLISG 408
              N +  + +   ++++ S+ G+++ +++    +  A D   W  L+ G
Sbjct: 561 NDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCG 610



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 118/492 (23%), Positives = 216/492 (43%), Gaps = 92/492 (18%)

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
           L+ +  + ++ LC+ +     G+++H+ +I   S  +   +   L+  Y+ C       R
Sbjct: 97  LETKTYSSVLQLCAGLKSFTDGKKVHS-IIKSNSVGVDEALGLKLVSFYATCGDLKEGRR 155

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTR--------------- 231
           VF+ M  +N   W  M+S      ++   I LF+ M  +G++  R               
Sbjct: 156 VFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRD 215

Query: 232 ------------------------------------VTLTIVLLACAELRDLRNGKAIHG 255
                                                T+  VL+ CA    L  GKA+H 
Sbjct: 216 VISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHS 275

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
            A    F+   + S  L+ MY +C + L  A  +FE+   ++VV W+S+I GY++ G   
Sbjct: 276 LAIKSSFERRINFSNTLLDMYSKCGD-LDGALRVFEKMGERNVVSWTSMIAGYTRDGRSD 334

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
            A+KL  +M  E ++ + V + +IL +C R   L +G  VH YI    +  ++ + NALM
Sbjct: 335 GAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALM 394

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           +MY+KCGS+ +++ +F+ M  +D +SW T+I        GE             ++PD+ 
Sbjct: 395 DMYAKCGSMEAANSVFSTMVVKDIISWNTMI--------GE-------------LKPDSR 433

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMK-----EKKIALAIEHYACYVDLLGKSGKIEDAC 490
           T+  +L AC     ++  + +   +++     ++ +A A+      VDL  K G +  A 
Sbjct: 434 TMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANAL------VDLYVKCGVLGLAR 487

Query: 491 KVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLSMVCSE 548
            +   +P K      + +++   +HG    A    +++ +A  EP+  +  ++L   CS 
Sbjct: 488 LLFDMIPSKDLVS-WTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISIL-YACSH 545

Query: 549 SGNWLGAEEVWR 560
           SG     E+ WR
Sbjct: 546 SGL---LEQGWR 554



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/340 (20%), Positives = 140/340 (41%), Gaps = 64/340 (18%)

Query: 285 PARIIFERTKVKD--VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSS 342
           P RI    T+  D  V  +++ I  + Q GDL  AM+L    +   +E  + T  ++L  
Sbjct: 51  PIRISATPTRTIDHQVTDYNAKILHFCQLGDLENAMELICMCKKSELE--TKTYSSVLQL 108

Query: 343 CTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSIT----------------- 385
           C      + G  VH  I    +  D ++G  L++ Y+ CG +                  
Sbjct: 109 CAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLW 168

Query: 386 ----------------------------------SSHQIFNEMAARDFVSWTTLISGYGF 411
                                             S+ ++F+++  RD +SW ++ISGY  
Sbjct: 169 NFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVS 228

Query: 412 HGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK---EKKIAL 468
           +G  E  L ++ +M   G++ D  T++++L  C ++G +   + + +  +K   E++I  
Sbjct: 229 NGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINF 288

Query: 469 AIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
           +       +D+  K G ++ A +V   M  + +    +S+++     GR + A  L  Q+
Sbjct: 289 S----NTLLDMYSKCGDLDGALRVFEKMGER-NVVSWTSMIAGYTRDGRSDGAIKLLQQM 343

Query: 529 -IEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567
             E    +    T +   C+ SG+    ++V   ++A  +
Sbjct: 344 EKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNM 383


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 182/533 (34%), Positives = 305/533 (57%), Gaps = 8/533 (1%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           GLQ+H   +K+G D    +SNSLI++Y K      A  LFD+   +  ++WNS+I+ +  
Sbjct: 213 GLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAA 272

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           NG  + +L MF  M L    L     A +I LC+ + EL    Q+H  V+  G F     
Sbjct: 273 NGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYG-FLFDQN 331

Query: 167 VSTALLDLYSKCHHWLIALRVFEQM-VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
           + TAL+  YSKC   L ALR+F+++  + N VSWTAMISG + +   +  +DLF  M+R+
Sbjct: 332 IRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRK 391

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
           GV+P   T +++L A   +    +   +H       ++    +  AL+  Y +  +    
Sbjct: 392 GVRPNEFTYSVILTALPVI----SPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEA 447

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT- 344
           A++ F     KD+V WS+++ GY+Q+G+   A+K+F  +    I+PN  T  +IL+ C  
Sbjct: 448 AKV-FSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAA 506

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
             + +  G   H + +K+ L+  + + +AL+ MY+K G+I S+ ++F     +D VSW +
Sbjct: 507 TNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNS 566

Query: 405 LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK 464
           +ISGY  HG   +AL +F EM++  V+ D +T + + +AC HAGLV+E E  F+ ++++ 
Sbjct: 567 MISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDC 626

Query: 465 KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEML 524
           KIA   EH +C VDL  ++G++E A KV+  MP    + I  ++++ACR+H + E+  + 
Sbjct: 627 KIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLA 686

Query: 525 AHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           A ++I  +PE++A Y LLS + +ESG+W    +V ++M  + + K  G+S IE
Sbjct: 687 AEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIE 739



 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 135/500 (27%), Positives = 251/500 (50%), Gaps = 7/500 (1%)

Query: 18  LHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFS 77
           +H  G+  + +I  SV+K  A     + FG QLHC  +K G   D  +  SL+  Y K S
Sbjct: 84  IHRLGMEMDCSIFSSVLKVSA-TLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGS 142

Query: 78  KPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS 137
             +   ++FDEM  R+ ++W ++I+ + +N      L +F  M   G    +   A  + 
Sbjct: 143 NFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALG 202

Query: 138 LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197
           + ++ G    G Q+H +V+ +G  + ++ VS +L++LY KC +   A  +F++  +++ V
Sbjct: 203 VLAEEGVGGRGLQVHTVVVKNG-LDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVV 261

Query: 198 SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
           +W +MISG   +      + +F +M+   V+ +  +   V+  CA L++LR  + +H   
Sbjct: 262 TWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSV 321

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
              GF FD ++  ALM  Y +CT  L   R+  E   V +VV W+++I G+ Q+    EA
Sbjct: 322 VKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEA 381

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
           + LFS M+ + + PN  T   IL++    S       VH  ++K       ++G AL++ 
Sbjct: 382 VDLFSEMKRKGVRPNEFTYSVILTALPVISPSE----VHAQVVKTNYERSSTVGTALLDA 437

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           Y K G +  + ++F+ +  +D V+W+ +++GY   G  E A+++F E+ + G++P+  T 
Sbjct: 438 YVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTF 497

Query: 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
            +IL+ C            F+    + ++  ++   +  + +  K G IE A +V     
Sbjct: 498 SSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQR 557

Query: 498 MKPSTRILSSLVSACRIHGR 517
            K      +S++S    HG+
Sbjct: 558 EKDLVS-WNSMISGYAQHGQ 576



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 135/431 (31%), Positives = 221/431 (51%), Gaps = 22/431 (5%)

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
           S+  +A+ LFD+ P RD  S+ S++  F+++G    +  +F  ++  G  +   + + ++
Sbjct: 41  SRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVL 100

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
            + + + +   GRQ+H   I  G F   V V T+L+D Y K  ++    +VF++M  RN 
Sbjct: 101 KVSATLCDELFGRQLHCQCIKFG-FLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNV 159

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           V+WT +ISG   +   D  + LF  MQ EG +P   T    L   AE      G  +H  
Sbjct: 160 VTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTV 219

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
               G D    +S +L+++Y +C   +  ARI+F++T+VK VV W+S+I GY+ +G   E
Sbjct: 220 VVKNGLDKTIPVSNSLINLYLKCGN-VRKARILFDKTEVKSVVTWNSMISGYAANGLDLE 278

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
           A+ +F  MRL  +  +  +  +++  C     L     +HC ++K G  FD +I  ALM 
Sbjct: 279 ALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMV 338

Query: 377 MYSKCGSITSSHQIFNEMA-ARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
            YSKC ++  + ++F E+    + VSWT +ISG+  +   EEA+ LF EM+  GV P+  
Sbjct: 339 AYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEF 398

Query: 436 TVLAILSACN-------HAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIED 488
           T   IL+A         HA +VK       N  +   +  A+      +D   K GK+E+
Sbjct: 399 TYSVILTALPVISPSEVHAQVVK------TNYERSSTVGTAL------LDAYVKLGKVEE 446

Query: 489 ACKVVSTMPMK 499
           A KV S +  K
Sbjct: 447 AAKVFSGIDDK 457



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 96/191 (50%), Gaps = 1/191 (0%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           EL   G+  N     S++  CA        G Q H  A+KS  D+   +S++L++MYAK 
Sbjct: 484 ELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKK 543

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
              ESA ++F     +D +SWNS+I+ + Q+G  +++L++F+EM      +      G+ 
Sbjct: 544 GNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVF 603

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV-IRN 195
           + C+  G +E G +   +++ D     +   ++ ++DLYS+      A++V E M     
Sbjct: 604 AACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAG 663

Query: 196 EVSWTAMISGC 206
              W  +++ C
Sbjct: 664 STIWRTILAAC 674


>gi|449445041|ref|XP_004140282.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
 gi|449481162|ref|XP_004156100.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
          Length = 693

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 194/572 (33%), Positives = 323/572 (56%), Gaps = 4/572 (0%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           + + L L+ Q    S +  +    P V+KAC        +G ++H   LK+G   D  + 
Sbjct: 86  FVEALQLFDQLNCNSYVRPDFYTYPVVLKACG-GLGRVIYGRRIHNHLLKTGLIWDVFVG 144

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           +SL++MYAK  +   A +LFDE P RD   WN++I+C+ ++G    +L+ F +M   GF 
Sbjct: 145 SSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAEMALKTFDKMKELGFE 204

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
             +     ++S C+++  LE G+++H  +I +    L  FV +AL+D+Y KC    +A  
Sbjct: 205 PNSVTFTVVVSSCTRLLNLERGKEVHRELI-ERRILLDAFVLSALVDMYGKCGCLEMAKE 263

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VFE++  +N ++W AMI+G     +  + I+L   M  EG KPT +TLT ++ A +    
Sbjct: 264 VFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMNDEGTKPTLMTLTSIIYASSRSVQ 323

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           LR+GK IHGY      D D  +  +L+  Y +C   +  A  IF      +VV W+ +I 
Sbjct: 324 LRHGKFIHGYILRNRIDVDIFIDVSLIDFYFKCG-YVSSAETIFRTISKNEVVSWNVMIS 382

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           G+   G+  +A+ ++  M+   ++P+++T  + LS+C++ + L  G  +H  I+   L  
Sbjct: 383 GHVMVGNHIQALHIYDNMKEHHVKPDALTFSSTLSACSQLAALDKGRELHYCIINHKLEA 442

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           +  +  AL++MY+KCG +  + ++F+++  RD VSWT++I  YG HG   EAL+LF EMQ
Sbjct: 443 NEIVMGALLDMYAKCGDVDEARKLFHQLPKRDLVSWTSMIFAYGSHGQASEALRLFDEMQ 502

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
           +  V  D++T LA+LSAC+HAGLV E    FN ++ +  I   IEHY+C +DLLG++G++
Sbjct: 503 KLNVRADSVTFLAVLSACSHAGLVDEGYMYFNEMVVQYDIKPGIEHYSCLIDLLGRAGRL 562

Query: 487 EDACKVVS-TMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV 545
            +A +++  +   +    +LS+L SAC +H    +   +   LIE +P++ + Y LLS +
Sbjct: 563 HEAYEILQRSKETRSDIGLLSTLFSACLLHNNFVLGIQIGKMLIEVDPDDPSTYILLSNM 622

Query: 546 CSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +    W    +V R M+  GL KS G S IE
Sbjct: 623 YASVNKWDEVRKVRRKMKELGLKKSPGCSWIE 654



 Score =  214 bits (545), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 148/527 (28%), Positives = 272/527 (51%), Gaps = 14/527 (2%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLF--D 87
           L S ++ C  ++  +  G  +H      G  ++ V+S SLI  Y       SA  +F  +
Sbjct: 6   LLSALRTCTSSKLLKQ-GKLIHQRIFSCGFQSNIVLSKSLIGFYFSCHDYASAELVFQTN 64

Query: 88  EMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISL--CSQIGEL 145
           + P  D   WN++++ +T N  +V +L++F ++  C   ++ +     + L  C  +G +
Sbjct: 65  DCPL-DVSLWNALLSAYTNNFRFVEALQLFDQLN-CNSYVRPDFYTYPVVLKACGGLGRV 122

Query: 146 ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISG 205
             GR+IH  ++  G     VFV ++L+++Y+KC  ++ A+++F++   R+   W A+IS 
Sbjct: 123 IYGRRIHNHLLKTGLI-WDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISC 181

Query: 206 CIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFD 265
                  +  +  F  M+  G +P  VT T+V+ +C  L +L  GK +H          D
Sbjct: 182 YFKDGKAEMALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRILLD 241

Query: 266 HHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR 325
             + +AL+ MY +C   L  A+ +FE+   K+ + W+++I GYS  GD    ++L  RM 
Sbjct: 242 AFVLSALVDMYGKCG-CLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMN 300

Query: 326 LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSIT 385
            E  +P  +TL +I+ + +R   L HG  +H YI++  ++ D+ I  +L++ Y KCG ++
Sbjct: 301 DEGTKPTLMTLTSIIYASSRSVQLRHGKFIHGYILRNRIDVDIFIDVSLIDFYFKCGYVS 360

Query: 386 SSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
           S+  IF  ++  + VSW  +ISG+   G   +AL ++  M+E  V+PDA+T  + LSAC+
Sbjct: 361 SAETIFRTISKNEVVSWNVMISGHVMVGNHIQALHIYDNMKEHHVKPDALTFSSTLSACS 420

Query: 446 HAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRIL 505
               + +   L   ++  K  A  I   A  +D+  K G +++A K+   +P K      
Sbjct: 421 QLAALDKGRELHYCIINHKLEANEIVMGA-LLDMYAKCGDVDEARKLFHQLP-KRDLVSW 478

Query: 506 SSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV--CSESG 550
           +S++ A   HG+   A  L  ++ +     A + T L+++  CS +G
Sbjct: 479 TSMIFAYGSHGQASEALRLFDEMQKLNVR-ADSVTFLAVLSACSHAG 524



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 81/270 (30%), Positives = 144/270 (53%), Gaps = 4/270 (1%)

Query: 232 VTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFE 291
           VTL   L  C   + L+ GK IH   + CGF  +  LS +L+  Y  C +    A ++F+
Sbjct: 4   VTLLSALRTCTSSKLLKQGKLIHQRIFSCGFQSNIVLSKSLIGFYFSCHD-YASAELVFQ 62

Query: 292 RTKVK-DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER-IEPNSVTLLAILSSCTRQSFL 349
                 DV +W++++  Y+ +    EA++LF ++     + P+  T   +L +C     +
Sbjct: 63  TNDCPLDVSLWNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLGRV 122

Query: 350 SHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGY 409
            +G  +H +++K GL +DV +G++LMNMY+KC     + ++F+E   RD   W  +IS Y
Sbjct: 123 IYGRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCY 182

Query: 410 GFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA 469
              G  E AL+ F +M+E G EP+++T   ++S+C     ++  + +   ++ E++I L 
Sbjct: 183 FKDGKAEMALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELI-ERRILLD 241

Query: 470 IEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
               +  VD+ GK G +E A +V   +P K
Sbjct: 242 AFVLSALVDMYGKCGCLEMAKEVFEKIPRK 271



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 101/231 (43%), Gaps = 7/231 (3%)

Query: 334 VTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFN- 392
           VTLL+ L +CT    L  G  +H  I   G   ++ +  +L+  Y  C    S+  +F  
Sbjct: 4   VTLLSALRTCTSSKLLKQGKLIHQRIFSCGFQSNIVLSKSLIGFYFSCHDYASAELVFQT 63

Query: 393 EMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ-ESGVEPDAITVLAILSACNHAGLVK 451
                D   W  L+S Y  +    EALQLF ++   S V PD  T   +L AC   G V 
Sbjct: 64  NDCPLDVSLWNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLGRVI 123

Query: 452 EAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSA 511
               + N+++K   I   +   +  +++  K  +  DA K+    P +      ++++S 
Sbjct: 124 YGRRIHNHLLKTGLI-WDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQR-DVGCWNAVISC 181

Query: 512 CRIHGRLEVAEMLAHQLIEA--EPENAANYTLLSMVCSESGNWLGAEEVWR 560
               G+ E+A     ++ E   EP N+  +T++   C+   N    +EV R
Sbjct: 182 YFKDGKAEMALKTFDKMKELGFEP-NSVTFTVVVSSCTRLLNLERGKEVHR 231


>gi|225456755|ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
           chloroplastic [Vitis vinifera]
 gi|297733984|emb|CBI15231.3| unnamed protein product [Vitis vinifera]
          Length = 893

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 192/567 (33%), Positives = 325/567 (57%), Gaps = 8/567 (1%)

Query: 11  LHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLI 70
            H +K E+   G   N   + SV+ AC      +   +QLH    K+G   D  +S++LI
Sbjct: 334 FHFFK-EMRKVGEKINNYTITSVLTACTEPVMIKE-AVQLHSWIFKTGFYLDSNVSSALI 391

Query: 71  SMYAKFSKPESAYQLFDEMPYRDTIS-WNSIINCFTQNGFYVRSLEMFREMYLCGFVLKA 129
           +MY+K    + + ++F EM     ++ W  +I+ F Q+G   R++E+F+ M   G     
Sbjct: 392 NMYSKIGVVDLSERVFREMESTKNLAMWAVMISAFAQSGSTGRAVELFQRMLQEGLRPDK 451

Query: 130 ELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
              + ++S+   I  L LGR IH  ++  G F   + V ++L  +YSKC     +  VFE
Sbjct: 452 FCSSSVLSI---IDSLSLGRLIHCYILKIGLFT-DISVGSSLFTMYSKCGSLEESYTVFE 507

Query: 190 QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
           QM  ++ VSW +MI+G  +  + +  + LFR M  E ++P ++TLT  L AC+ L  L  
Sbjct: 508 QMPDKDNVSWASMITGFSEHDHAEQAVQLFREMLLEEIRPDQMTLTAALTACSALHSLEK 567

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
           GK +HGYA       +  +  AL++MY +C  A+  AR +F+    KD    SS++ GY+
Sbjct: 568 GKEVHGYALRARVGKEVLVGGALVNMYSKCG-AIVLARRVFDMLPQKDQFSCSSLVSGYA 626

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
           Q+G + +A+ LF  +R+  +  +S T+ +++ +    + L  G  +H  + K GLN +VS
Sbjct: 627 QNGYIEDALLLFHEIRMADLWIDSFTVSSVIGAVAILNSLDIGTQLHACVTKMGLNAEVS 686

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
           +G++L+ MYSKCGSI   H++F ++   D +SWT +I  Y  HG G EAL+++  M++ G
Sbjct: 687 VGSSLVTMYSKCGSIDECHKVFEQIEKPDLISWTAMIVSYAQHGKGAEALKVYDLMRKEG 746

Query: 430 VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
            +PD++T + +LSAC+H G+V+E  +  N++ KE  I     HYAC VDLLG+SG++++A
Sbjct: 747 TKPDSVTFVGVLSACSHNGMVEEGYSHLNSMAKEYGIEPGYYHYACMVDLLGRSGRLKEA 806

Query: 490 CKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSES 549
            + ++ MP++P   +   L++AC++HG +E+  + A ++IE EP  A  Y  LS +C++ 
Sbjct: 807 ERFINNMPIEPDALLWGILLAACKVHGDIELGRLAAKRVIELEPCEAGAYVTLSNICADM 866

Query: 550 GNWLGAEEVWRVMRAKGLSKSYGFSRI 576
           G W    ++  +M   G+ K  G+S +
Sbjct: 867 GWWEDVMKIRSLMEGTGVKKEPGWSSV 893



 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 165/515 (32%), Positives = 282/515 (54%), Gaps = 13/515 (2%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           SG   N     SV+ AC  A     +G  ++  ALK+G  ++  +   +I ++AK    E
Sbjct: 141 SGFDPNQFTYGSVLSACT-ALGSPLYGELVYSLALKNGFFSNGYVRAGMIDLFAKLCSFE 199

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
            A ++F ++   + + WN+II+   +N     +L++F +M    F+  +   + I++ C+
Sbjct: 200 DALRVFQDVLCENVVCWNAIISGAVKNRENWVALDLFCQMCCRFFMPNSFTFSSILTACA 259

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
            + ELE GR +   VI  G+ E  VFV TA++DLY+KC     A++ F +M IRN VSWT
Sbjct: 260 ALEELEFGRGVQGWVIKCGAGE-DVFVGTAIIDLYAKCRDMDQAVKEFLRMPIRNVVSWT 318

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
            +ISG +   +  +    F+ M++ G K    T+T VL AC E   ++    +H + +  
Sbjct: 319 TIISGFVQKDDSISAFHFFKEMRKVGEKINNYTITSVLTACTEPVMIKEAVQLHSWIFKT 378

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
           GF  D ++S+AL++MY +        R+  E    K++ +W+ +I  ++QSG    A++L
Sbjct: 379 GFYLDSNVSSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMISAFAQSGSTGRAVEL 438

Query: 321 FSRMRLERIEPN---SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
           F RM  E + P+   S ++L+I+ S      LS G  +HCYI+K GL  D+S+G++L  M
Sbjct: 439 FQRMLQEGLRPDKFCSSSVLSIIDS------LSLGRLIHCYILKIGLFTDISVGSSLFTM 492

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           YSKCGS+  S+ +F +M  +D VSW ++I+G+  H + E+A+QLF EM    + PD +T+
Sbjct: 493 YSKCGSLEESYTVFEQMPDKDNVSWASMITGFSEHDHAEQAVQLFREMLLEEIRPDQMTL 552

Query: 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
            A L+AC+    +++ + +    ++  ++   +      V++  K G I  A +V   +P
Sbjct: 553 TAALTACSALHSLEKGKEVHGYALR-ARVGKEVLVGGALVNMYSKCGAIVLARRVFDMLP 611

Query: 498 MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE 532
            K      SSLVS    +G +E A +L H++  A+
Sbjct: 612 QKDQFSC-SSLVSGYAQNGYIEDALLLFHEIRMAD 645



 Score =  212 bits (539), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 136/490 (27%), Positives = 241/490 (49%), Gaps = 11/490 (2%)

Query: 50  LHCTALKSGS-DADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           LH   LK+    ++  ++NSL+  Y K +    A +LFD+ P+ + ISWN +I+   QN 
Sbjct: 67  LHAHFLKTAILQSNTFMTNSLMGWYCKSNSMVHALRLFDKTPHPNVISWNILISGCNQNF 126

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
            +  S   F +M   GF         ++S C+ +G    G  +++L + +G F  + +V 
Sbjct: 127 SFEDSWRNFCKMRFSGFDPNQFTYGSVLSACTALGSPLYGELVYSLALKNGFFS-NGYVR 185

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
             ++DL++K   +  ALRVF+ ++  N V W A+ISG + ++     +DLF  M      
Sbjct: 186 AGMIDLFAKLCSFEDALRVFQDVLCENVVCWNAIISGAVKNRENWVALDLFCQMCCRFFM 245

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
           P   T + +L ACA L +L  G+ + G+   CG   D  +  A++ +Y +C + +  A  
Sbjct: 246 PNSFTFSSILTACAALEELEFGRGVQGWVIKCGAGEDVFVGTAIIDLYAKCRD-MDQAVK 304

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
            F R  +++VV W++II G+ Q  D   A   F  MR    + N+ T+ ++L++CT    
Sbjct: 305 EFLRMPIRNVVSWTTIISGFVQKDDSISAFHFFKEMRKVGEKINNYTITSVLTACTEPVM 364

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEM-AARDFVSWTTLIS 407
           +   + +H +I K G   D ++ +AL+NMYSK G +  S ++F EM + ++   W  +IS
Sbjct: 365 IKEAVQLHSWIFKTGFYLDSNVSSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMIS 424

Query: 408 GYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIA 467
            +   G    A++LF  M + G+ PD     ++LS  +   L +        +     I+
Sbjct: 425 AFAQSGSTGRAVELFQRMLQEGLRPDKFCSSSVLSIIDSLSLGRLIHCYILKIGLFTDIS 484

Query: 468 LAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQ 527
           +    +  Y     K G +E++  V   MP K +    +S+++    H   E A  L  +
Sbjct: 485 VGSSLFTMY----SKCGSLEESYTVFEQMPDKDNVS-WASMITGFSEHDHAEQAVQLFRE 539

Query: 528 LI--EAEPEN 535
           ++  E  P+ 
Sbjct: 540 MLLEEIRPDQ 549



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 106/404 (26%), Positives = 202/404 (50%), Gaps = 10/404 (2%)

Query: 151 IHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQ 210
           +HA  +     + + F++ +L+  Y K +  + ALR+F++    N +SW  +ISGC  + 
Sbjct: 67  LHAHFLKTAILQSNTFMTNSLMGWYCKSNSMVHALRLFDKTPHPNVISWNILISGCNQNF 126

Query: 211 NYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSA 270
           +++     F  M+  G  P + T   VL AC  L     G+ ++  A   GF  + ++ A
Sbjct: 127 SFEDSWRNFCKMRFSGFDPNQFTYGSVLSACTALGSPLYGELVYSLALKNGFFSNGYVRA 186

Query: 271 ALMHMY---CECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
            ++ ++   C   +AL     +F+    ++VV W++II G  ++ +   A+ LF +M   
Sbjct: 187 GMIDLFAKLCSFEDALR----VFQDVLCENVVCWNAIISGAVKNRENWVALDLFCQMCCR 242

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
              PNS T  +IL++C     L  G GV  +++K G   DV +G A++++Y+KC  +  +
Sbjct: 243 FFMPNSFTFSSILTACAALEELEFGRGVQGWVIKCGAGEDVFVGTAIIDLYAKCRDMDQA 302

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHA 447
            + F  M  R+ VSWTT+ISG+        A   F EM++ G + +  T+ ++L+AC   
Sbjct: 303 VKEFLRMPIRNVVSWTTIISGFVQKDDSISAFHFFKEMRKVGEKINNYTITSVLTACTEP 362

Query: 448 GLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSS 507
            ++KEA  L + + K     L     +  +++  K G ++ + +V   M    +  + + 
Sbjct: 363 VMIKEAVQLHSWIFK-TGFYLDSNVSSALINMYSKIGVVDLSERVFREMESTKNLAMWAV 421

Query: 508 LVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLSMVCSES 549
           ++SA    G    A  L  ++++    P+   + ++LS++ S S
Sbjct: 422 MISAFAQSGSTGRAVELFQRMLQEGLRPDKFCSSSVLSIIDSLS 465



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 100/199 (50%), Gaps = 2/199 (1%)

Query: 247 LRNGKAIHG-YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
           LRN K +H  +        +  ++ +LM  YC+    +H  R+ F++T   +V+ W+ +I
Sbjct: 61  LRNTKILHAHFLKTAILQSNTFMTNSLMGWYCKSNSMVHALRL-FDKTPHPNVISWNILI 119

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
            G +Q+    ++ + F +MR    +PN  T  ++LS+CT      +G  V+   +K G  
Sbjct: 120 SGCNQNFSFEDSWRNFCKMRFSGFDPNQFTYGSVLSACTALGSPLYGELVYSLALKNGFF 179

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            +  +   ++++++K  S   + ++F ++   + V W  +ISG   +     AL LF +M
Sbjct: 180 SNGYVRAGMIDLFAKLCSFEDALRVFQDVLCENVVCWNAIISGAVKNRENWVALDLFCQM 239

Query: 426 QESGVEPDAITVLAILSAC 444
                 P++ T  +IL+AC
Sbjct: 240 CCRFFMPNSFTFSSILTAC 258


>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
          Length = 852

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 181/561 (32%), Positives = 325/561 (57%), Gaps = 3/561 (0%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           ++  SG   N A L   +   A  ++   FG+QLH  A+K G +++  ++N+L+SMYAK 
Sbjct: 237 DMRASGCEPNFATLACFLSVSA-TESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKC 295

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
              +  ++LF  MP  D ++WN +I+   QNGF  ++L +F +M   G    +  L  ++
Sbjct: 296 KCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLL 355

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
              + +     G+++H   IV     + VF+ +AL+D+Y KC    +A  V++     + 
Sbjct: 356 PALTDLNGFNQGKELHGY-IVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDV 414

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           V  + MISG + +      + +FR +  +G++P  V +  VL ACA +  ++ G+ +H Y
Sbjct: 415 VIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSY 474

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
           A    ++   ++ +ALM MY +C   L  +  IF +   KD V W+S+I  ++Q+G+  E
Sbjct: 475 ALKNAYEGRCYVESALMDMYAKCGR-LDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEE 533

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
           A+ LF  M +E ++ ++VT+ ++LS+C     + +G  +H  ++K  +  D+   +AL++
Sbjct: 534 ALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALID 593

Query: 377 MYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAIT 436
           MY KCG++  +H++F  M  ++ VSW ++I+ YG +G  +E++ L   MQE G + D +T
Sbjct: 594 MYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVT 653

Query: 437 VLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
            LA++SAC HAG V+E   LF  + +E +IA  +EH+AC VDL  ++GK++ A +++  M
Sbjct: 654 FLALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDM 713

Query: 497 PMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAE 556
           P KP   I  +L+ ACR+H  +E+AE+ + +L + +P N+  Y L+S + + +G W G  
Sbjct: 714 PFKPDAGIWGALLHACRVHRNVELAEIASQELFKLDPHNSGYYVLMSNINAVAGRWDGVS 773

Query: 557 EVWRVMRAKGLSKSYGFSRIE 577
           +V R+M+   + K  G+S ++
Sbjct: 774 KVRRLMKDTKVQKIPGYSWVD 794



 Score =  258 bits (658), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 175/560 (31%), Positives = 291/560 (51%), Gaps = 11/560 (1%)

Query: 7   YEQTLHLY-KQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           Y   L  Y K   HPS    ++   P V+K+CA A      G  +H TA   G D D  +
Sbjct: 125 YRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCA-ALGAIALGRLVHRTARTLGLDGDMFV 183

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
            ++LI MYA       A Q+FD M  RD + WN +++ + + G    ++E+F +M   G 
Sbjct: 184 GSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGC 243

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
                 LA  +S+ +   +L  G Q+H L +  G  E  V V+  L+ +Y+KC       
Sbjct: 244 EPNFATLACFLSVSATESDLFFGVQLHTLAVKYG-LESEVAVANTLVSMYAKCKCLDDGW 302

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
           ++F  M   + V+W  MISGC+ +   D  + LF  MQ+ G++P  VTL  +L A  +L 
Sbjct: 303 KLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLN 362

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
               GK +HGY        D  L +AL+ +Y +C  A+  A+ +++ +K  DVVI S++I
Sbjct: 363 GFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKC-RAVRMAQSVYDSSKAIDVVIGSTMI 421

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
            GY  +G   EA+K+F  +  + I PN+V + ++L +C   + +  G  +H Y +K    
Sbjct: 422 SGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYE 481

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
               + +ALM+MY+KCG +  SH IF++++A+D V+W ++IS +  +G  EEAL LF EM
Sbjct: 482 GRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREM 541

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
              GV+   +T+ ++LSAC     +   + +   V+K   I   +   +  +D+ GK G 
Sbjct: 542 CMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIK-GPIRADLFAESALIDMYGKCGN 600

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGRL-EVAEMLAHQLIEAEPENAANYTLLSM 544
           +E A +V  +MP K      +S++++   +G + E   +L H  ++ E   A + T L++
Sbjct: 601 LEWAHRVFESMPEKNEVS-WNSIIASYGAYGLVKESVSLLRH--MQEEGFKADHVTFLAL 657

Query: 545 V--CSESGNWLGAEEVWRVM 562
           V  C+ +G       ++R M
Sbjct: 658 VSACAHAGQVQEGLRLFRCM 677



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 165/337 (48%), Gaps = 6/337 (1%)

Query: 132 LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM 191
           L  ++  C     L LG Q+H   +  G       + T L+ +Y     +  A+ VF  +
Sbjct: 42  LLAVLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSL 101

Query: 192 ---VIRNEVSWTAMISGCIDSQNYDTGIDLFRAM--QREGVKPTRVTLTIVLLACAELRD 246
                   + W  +I G   + +Y + +  +  M        P   T   V+ +CA L  
Sbjct: 102 PRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGA 161

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           +  G+ +H  A   G D D  + +AL+ MY      L  AR +F+    +D V+W+ ++ 
Sbjct: 162 IALGRLVHRTARTLGLDGDMFVGSALIKMYAN-GGLLWDARQVFDGMAERDCVLWNVMMD 220

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           GY ++G +S A++LF  MR    EPN  TL   LS    +S L  G+ +H   +K GL  
Sbjct: 221 GYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLES 280

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           +V++ N L++MY+KC  +    ++F  M   D V+W  +ISG   +G+ ++AL LF +MQ
Sbjct: 281 EVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQ 340

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKE 463
           +SG+ PD++T++++L A        + + L   +++ 
Sbjct: 341 KSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRN 377


>gi|356532311|ref|XP_003534717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Glycine max]
          Length = 755

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 180/528 (34%), Positives = 308/528 (58%), Gaps = 2/528 (0%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           LH  A+  G  +D  +SNS++++Y K    E + +LFD M +RD +SWNS+I+ + Q G 
Sbjct: 181 LHGCAILYGFMSDINLSNSMLNVYGKCGNIEYSRKLFDYMDHRDLVSWNSLISAYAQIGN 240

Query: 110 YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVST 169
               L + + M L GF    +    ++S+ +  GEL+LGR +H  ++  G F L   V T
Sbjct: 241 ICEVLLLLKTMRLQGFEAGPQTFGSVLSVAASRGELKLGRCLHGQILRAG-FYLDAHVET 299

Query: 170 ALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKP 229
           +L+ +Y K     IA R+FE+   ++ V WTAMISG + + + D  + +FR M + GVKP
Sbjct: 300 SLIVVYLKGGKIDIAFRMFERSSDKDVVLWTAMISGLVQNGSADKALAVFRQMLKFGVKP 359

Query: 230 TRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARII 289
           +  T+  V+ ACA+L     G +I GY        D     +L+ MY +C   L  + I+
Sbjct: 360 STATMASVITACAQLGSYNLGTSILGYILRQELPLDVATQNSLVTMYAKCGH-LDQSSIV 418

Query: 290 FERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFL 349
           F+    +D+V W++++ GY+Q+G + EA+ LF+ MR +   P+S+T++++L  C     L
Sbjct: 419 FDMMNRRDLVSWNAMVTGYAQNGYVCEALFLFNEMRSDNQTPDSITIVSLLQGCASTGQL 478

Query: 350 SHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGY 409
             G  +H ++++ GL   + +  +L++MY KCG + ++ + FN+M + D VSW+ +I GY
Sbjct: 479 HLGKWIHSFVIRNGLRPCILVDTSLVDMYCKCGDLDTAQRCFNQMPSHDLVSWSAIIVGY 538

Query: 410 GFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA 469
           G+HG GE AL+ + +  ESG++P+ +  L++LS+C+H GLV++   ++ ++ K+  IA  
Sbjct: 539 GYHGKGEAALRFYSKFLESGMKPNHVIFLSVLSSCSHNGLVEQGLNIYESMTKDFGIAPD 598

Query: 470 IEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLI 529
           +EH+AC VDLL ++G++E+A  V       P   +L  ++ ACR +G  E+ + +A+ ++
Sbjct: 599 LEHHACVVDLLSRAGRVEEAYNVYKKKFPDPVLDVLGIILDACRANGNNELGDTIANDIL 658

Query: 530 EAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
              P +A N+  L+   +    W    E W  MR+ GL K  G+S I+
Sbjct: 659 MLRPMDAGNFVQLAHCYASINKWEEVGEAWTYMRSLGLKKIPGWSFID 706



 Score =  241 bits (614), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 161/549 (29%), Positives = 285/549 (51%), Gaps = 18/549 (3%)

Query: 7   YEQTLHLYKQELH---PSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADP 63
           + Q L  Y   L    PS  Y+     PS++KAC++       GL LH   L SG   D 
Sbjct: 42  HHQVLATYASMLKTHVPSDAYT----FPSLLKACSFLNLFS-LGLTLHQRILVSGLSLDA 96

Query: 64  VISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC 123
            I++SLI+ YAKF   + A ++FD MP R+ + W +II C+++ G    +  +F EM   
Sbjct: 97  YIASSLINFYAKFGFADVARKVFDYMPERNVVPWTTIIGCYSRTGRVPEAFSLFDEMRRQ 156

Query: 124 GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
           G    +     ++SL   + EL   + +H   I+ G F   + +S ++L++Y KC +   
Sbjct: 157 GIQPSS---VTVLSLLFGVSELAHVQCLHGCAILYG-FMSDINLSNSMLNVYGKCGNIEY 212

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
           + ++F+ M  R+ VSW ++IS      N    + L + M+ +G +    T   VL   A 
Sbjct: 213 SRKLFDYMDHRDLVSWNSLISAYAQIGNICEVLLLLKTMRLQGFEAGPQTFGSVLSVAAS 272

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
             +L+ G+ +HG     GF  D H+  +L+ +Y +  + +  A  +FER+  KDVV+W++
Sbjct: 273 RGELKLGRCLHGQILRAGFYLDAHVETSLIVVYLKGGK-IDIAFRMFERSSDKDVVLWTA 331

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           +I G  Q+G   +A+ +F +M    ++P++ T+ +++++C +    + G  +  YI++  
Sbjct: 332 MISGLVQNGSADKALAVFRQMLKFGVKPSTATMASVITACAQLGSYNLGTSILGYILRQE 391

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
           L  DV+  N+L+ MY+KCG +  S  +F+ M  RD VSW  +++GY  +GY  EAL LF 
Sbjct: 392 LPLDVATQNSLVTMYAKCGHLDQSSIVFDMMNRRDLVSWNAMVTGYAQNGYVCEALFLFN 451

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS 483
           EM+     PD+IT++++L  C   G +   + + + V++   +   I      VD+  K 
Sbjct: 452 EMRSDNQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIR-NGLRPCILVDTSLVDMYCKC 510

Query: 484 GKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTL 541
           G ++ A +  + MP        S+++     HG+ E A     + +E+  +P +    ++
Sbjct: 511 GDLDTAQRCFNQMPSHDLVS-WSAIIVGYGYHGKGEAALRFYSKFLESGMKPNHVIFLSV 569

Query: 542 LSMVCSESG 550
           LS  CS +G
Sbjct: 570 LS-SCSHNG 577



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 99/349 (28%), Positives = 175/349 (50%), Gaps = 3/349 (0%)

Query: 46  FGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT 105
            G  LH   L++G   D  +  SLI +Y K  K + A+++F+    +D + W ++I+   
Sbjct: 278 LGRCLHGQILRAGFYLDAHVETSLIVVYLKGGKIDIAFRMFERSSDKDVVLWTAMISGLV 337

Query: 106 QNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSV 165
           QNG   ++L +FR+M   G       +A +I+ C+Q+G   LG  I    I+     L V
Sbjct: 338 QNGSADKALAVFRQMLKFGVKPSTATMASVITACAQLGSYNLGTSILGY-ILRQELPLDV 396

Query: 166 FVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
               +L+ +Y+KC H   +  VF+ M  R+ VSW AM++G   +      + LF  M+ +
Sbjct: 397 ATQNSLVTMYAKCGHLDQSSIVFDMMNRRDLVSWNAMVTGYAQNGYVCEALFLFNEMRSD 456

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
              P  +T+  +L  CA    L  GK IH +    G      +  +L+ MYC+C + L  
Sbjct: 457 NQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRNGLRPCILVDTSLVDMYCKCGD-LDT 515

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           A+  F +    D+V WS+II GY   G    A++ +S+     ++PN V  L++LSSC+ 
Sbjct: 516 AQRCFNQMPSHDLVSWSAIIVGYGYHGKGEAALRFYSKFLESGMKPNHVIFLSVLSSCSH 575

Query: 346 QSFLSHGLGVHCYIMKA-GLNFDVSIGNALMNMYSKCGSITSSHQIFNE 393
              +  GL ++  + K  G+  D+     ++++ S+ G +  ++ ++ +
Sbjct: 576 NGLVEQGLNIYESMTKDFGIAPDLEHHACVVDLLSRAGRVEEAYNVYKK 624



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 132/269 (49%), Gaps = 15/269 (5%)

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           ++ I  +S  G   + +  ++ M    +  ++ T  ++L +C+  +  S GL +H  I+ 
Sbjct: 30  NATINHHSTQGAHHQVLATYASMLKTHVPSDAYTFPSLLKACSFLNLFSLGLTLHQRILV 89

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
           +GL+ D  I ++L+N Y+K G    + ++F+ M  R+ V WTT+I  Y   G   EA  L
Sbjct: 90  SGLSLDAYIASSLINFYAKFGFADVARKVFDYMPERNVVPWTTIIGCYSRTGRVPEAFSL 149

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVK--EAETLFNNVMKEKKIALAIEHYACYVDL 479
           F EM+  G++P ++TVL++L   +    V+      +    M +  ++ ++      +++
Sbjct: 150 FDEMRRQGIQPSSVTVLSLLFGVSELAHVQCLHGCAILYGFMSDINLSNSM------LNV 203

Query: 480 LGKSGKIEDACKVVSTMPMKPSTRILSSLVSA-CRIHGRLEVAEMLAH---QLIEAEPEN 535
            GK G IE + K+   M  +      +SL+SA  +I    EV  +L     Q  EA P+ 
Sbjct: 204 YGKCGNIEYSRKLFDYMDHRDLVS-WNSLISAYAQIGNICEVLLLLKTMRLQGFEAGPQT 262

Query: 536 AANYTLLSMVCSESGNWLGAEEVWRVMRA 564
               ++LS+  S     LG     +++RA
Sbjct: 263 FG--SVLSVAASRGELKLGRCLHGQILRA 289



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/175 (21%), Positives = 79/175 (45%), Gaps = 1/175 (0%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
            E+       ++  + S+++ CA +    H G  +H   +++G     ++  SL+ MY K
Sbjct: 451 NEMRSDNQTPDSITIVSLLQGCA-STGQLHLGKWIHSFVIRNGLRPCILVDTSLVDMYCK 509

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
               ++A + F++MP  D +SW++II  +  +G    +L  + +    G      +   +
Sbjct: 510 CGDLDTAQRCFNQMPSHDLVSWSAIIVGYGYHGKGEAALRFYSKFLESGMKPNHVIFLSV 569

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQ 190
           +S CS  G +E G  I+  +  D      +     ++DL S+      A  V+++
Sbjct: 570 LSSCSHNGLVEQGLNIYESMTKDFGIAPDLEHHACVVDLLSRAGRVEEAYNVYKK 624


>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
 gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 843

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 181/561 (32%), Positives = 325/561 (57%), Gaps = 3/561 (0%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           ++  SG   N A L   +   A  ++   FG+QLH  A+K G +++  ++N+L+SMYAK 
Sbjct: 237 DMRASGCEPNFATLACFLSVSA-TESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKC 295

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
              +  ++LF  MP  D ++WN +I+   QNGF  ++L +F +M   G    +  L  ++
Sbjct: 296 KCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLL 355

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
              + +     G+++H   IV     + VF+ +AL+D+Y KC    +A  V++     + 
Sbjct: 356 PALTDLNGFNQGKELHGY-IVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDV 414

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           V  + MISG + +      + +FR +  +G++P  V +  VL ACA +  ++ G+ +H Y
Sbjct: 415 VIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSY 474

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
           A    ++   ++ +ALM MY +C   L  +  IF +   KD V W+S+I  ++Q+G+  E
Sbjct: 475 ALKNAYEGRCYVESALMDMYAKCGR-LDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEE 533

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
           A+ LF  M +E ++ ++VT+ ++LS+C     + +G  +H  ++K  +  D+   +AL++
Sbjct: 534 ALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALID 593

Query: 377 MYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAIT 436
           MY KCG++  +H++F  M  ++ VSW ++I+ YG +G  +E++ L   MQE G + D +T
Sbjct: 594 MYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVT 653

Query: 437 VLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
            LA++SAC HAG V+E   LF  + +E +IA  +EH+AC VDL  ++GK++ A +++  M
Sbjct: 654 FLALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDM 713

Query: 497 PMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAE 556
           P KP   I  +L+ ACR+H  +E+AE+ + +L + +P N+  Y L+S + + +G W G  
Sbjct: 714 PFKPDAGIWGALLHACRVHRNVELAEIASQELFKLDPHNSGYYVLMSNINAVAGRWDGVS 773

Query: 557 EVWRVMRAKGLSKSYGFSRIE 577
           +V R+M+   + K  G+S ++
Sbjct: 774 KVRRLMKDTKVQKIPGYSWVD 794



 Score =  258 bits (658), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 175/560 (31%), Positives = 291/560 (51%), Gaps = 11/560 (1%)

Query: 7   YEQTLHLY-KQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           Y   L  Y K   HPS    ++   P V+K+CA A      G  +H TA   G D D  +
Sbjct: 125 YRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCA-ALGAIALGRLVHRTARTLGLDGDMFV 183

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
            ++LI MYA       A Q+FD M  RD + WN +++ + + G    ++E+F +M   G 
Sbjct: 184 GSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGC 243

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
                 LA  +S+ +   +L  G Q+H L +  G  E  V V+  L+ +Y+KC       
Sbjct: 244 EPNFATLACFLSVSATESDLFFGVQLHTLAVKYG-LESEVAVANTLVSMYAKCKCLDDGW 302

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
           ++F  M   + V+W  MISGC+ +   D  + LF  MQ+ G++P  VTL  +L A  +L 
Sbjct: 303 KLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLN 362

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
               GK +HGY        D  L +AL+ +Y +C  A+  A+ +++ +K  DVVI S++I
Sbjct: 363 GFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKC-RAVRMAQSVYDSSKAIDVVIGSTMI 421

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
            GY  +G   EA+K+F  +  + I PN+V + ++L +C   + +  G  +H Y +K    
Sbjct: 422 SGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYE 481

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
               + +ALM+MY+KCG +  SH IF++++A+D V+W ++IS +  +G  EEAL LF EM
Sbjct: 482 GRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREM 541

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
              GV+   +T+ ++LSAC     +   + +   V+K   I   +   +  +D+ GK G 
Sbjct: 542 CMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIK-GPIRADLFAESALIDMYGKCGN 600

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGRL-EVAEMLAHQLIEAEPENAANYTLLSM 544
           +E A +V  +MP K      +S++++   +G + E   +L H  ++ E   A + T L++
Sbjct: 601 LEWAHRVFESMPEKNEVS-WNSIIASYGAYGLVKESVSLLRH--MQEEGFKADHVTFLAL 657

Query: 545 V--CSESGNWLGAEEVWRVM 562
           V  C+ +G       ++R M
Sbjct: 658 VSACAHAGQVQEGLRLFRCM 677



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 165/337 (48%), Gaps = 6/337 (1%)

Query: 132 LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM 191
           L  ++  C     L LG Q+H   +  G       + T L+ +Y     +  A+ VF  +
Sbjct: 42  LLAVLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSL 101

Query: 192 ---VIRNEVSWTAMISGCIDSQNYDTGIDLFRAM--QREGVKPTRVTLTIVLLACAELRD 246
                   + W  +I G   + +Y + +  +  M        P   T   V+ +CA L  
Sbjct: 102 PRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGA 161

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           +  G+ +H  A   G D D  + +AL+ MY      L  AR +F+    +D V+W+ ++ 
Sbjct: 162 IALGRLVHRTARTLGLDGDMFVGSALIKMYAN-GGLLWDARQVFDGMAERDCVLWNVMMD 220

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           GY ++G +S A++LF  MR    EPN  TL   LS    +S L  G+ +H   +K GL  
Sbjct: 221 GYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLES 280

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           +V++ N L++MY+KC  +    ++F  M   D V+W  +ISG   +G+ ++AL LF +MQ
Sbjct: 281 EVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQ 340

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKE 463
           +SG+ PD++T++++L A        + + L   +++ 
Sbjct: 341 KSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRN 377


>gi|357166812|ref|XP_003580863.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Brachypodium distachyon]
          Length = 707

 Score =  345 bits (885), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 194/557 (34%), Positives = 307/557 (55%), Gaps = 10/557 (1%)

Query: 29  ILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDE 88
           ++  +++A A A +  H G QLH   LK G  +D ++ N+LI MYAK  +   A ++F  
Sbjct: 6   MIADMLRASA-ASSAIHGGAQLHGALLKLGFGSDTMLGNNLIDMYAKCGELRMAGEVFGG 64

Query: 89  MPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAEL-LAGIISLCSQIGELEL 147
           MP R+ +SW +++  F ++G     L +   M     V   E  L+  +  C  +G++  
Sbjct: 65  MPERNVVSWTALMVGFLRHGDARECLRLLGAMRSLSDVAPNEFTLSASLKACGVVGDMAA 124

Query: 148 GRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCI 207
           G  IH   +  G FE    V+ +L+ LYSK      A RVF+  V RN V+W AMISG  
Sbjct: 125 GVWIHGACVRAG-FEGHHVVANSLVLLYSKGGRIGDARRVFDGTVFRNLVTWNAMISGYA 183

Query: 208 DSQNYDTGIDLFRAMQR-----EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGF 262
            + +    + +FR MQ+     E  +P   T   +L AC  L   R G  +H      G 
Sbjct: 184 HAGHGRDSLLVFREMQQRRQEEEDHQPDEFTFASLLKACGSLGAAREGAQVHAAMVIRGV 243

Query: 263 DFDHH--LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
               +  L+ AL+ MY +C   L  A  +F R + K+ + W+++I G++Q G + EAM+L
Sbjct: 244 STASNAILAGALLDMYVKCRCLLPMAMQVFNRLEQKNAIQWTTVIVGHAQEGQVKEAMEL 303

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
           F R     +  +   L +++      + +  G  VHCY +K     DVS+ N+L++MY K
Sbjct: 304 FGRFWSSGVRADGHVLSSVVGVFADFALVEQGRQVHCYTVKTPAGLDVSVANSLIDMYHK 363

Query: 381 CGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
           CG    + + F E+ AR+ VSWT +I+G G HG+G+EA+ +F EM+  GVEPD +  LA+
Sbjct: 364 CGLTDEAARRFREVPARNVVSWTAMINGLGKHGHGQEAIHMFEEMRAEGVEPDEVAYLAL 423

Query: 441 LSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKP 500
           LSAC+H+GLV+E    F+ +  ++++    EHYAC VDLLG++G++ +A  +V+TMPM P
Sbjct: 424 LSACSHSGLVEECRRYFSAIRHDRRLRPRAEHYACMVDLLGRAGELSEAKDLVATMPMAP 483

Query: 501 STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWR 560
           +  +  +L+SACR+H  + V       L+  + +N  NY +LS + +E+G+W   + V  
Sbjct: 484 TVGVWQTLLSACRVHKNVTVGREAGETLLAIDGDNPVNYVMLSNIFAEAGDWRECQRVRG 543

Query: 561 VMRAKGLSKSYGFSRIE 577
            MR +GL K  G S +E
Sbjct: 544 AMRRRGLRKQGGCSWVE 560



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 116/229 (50%), Gaps = 7/229 (3%)

Query: 231 RVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIF 290
           R  +  +L A A    +  G  +HG     GF  D  L   L+ MY +C E L  A  +F
Sbjct: 4   RKMIADMLRASAASSAIHGGAQLHGALLKLGFGSDTMLGNNLIDMYAKCGE-LRMAGEVF 62

Query: 291 ERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR-LERIEPNSVTLLAILSSCTRQSFL 349
                ++VV W++++ G+ + GD  E ++L   MR L  + PN  TL A L +C     +
Sbjct: 63  GGMPERNVVSWTALMVGFLRHGDARECLRLLGAMRSLSDVAPNEFTLSASLKACGVVGDM 122

Query: 350 SHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGY 409
           + G+ +H   ++AG      + N+L+ +YSK G I  + ++F+    R+ V+W  +ISGY
Sbjct: 123 AAGVWIHGACVRAGFEGHHVVANSLVLLYSKGGRIGDARRVFDGTVFRNLVTWNAMISGY 182

Query: 410 GFHGYGEEALQLFLEMQ-----ESGVEPDAITVLAILSACNHAGLVKEA 453
              G+G ++L +F EMQ     E   +PD  T  ++L AC   G  +E 
Sbjct: 183 AHAGHGRDSLLVFREMQQRRQEEEDHQPDEFTFASLLKACGSLGAAREG 231


>gi|225470674|ref|XP_002269391.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 587

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 183/552 (33%), Positives = 318/552 (57%), Gaps = 7/552 (1%)

Query: 27  TAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLF 86
           T  L S++  C+  +  +  GL LH   LK+G+ +D  +SN +++MYAK      A Q+F
Sbjct: 3   TETLSSLLHHCSKTKALR-CGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVF 61

Query: 87  DEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELE 146
           DEM  ++ +SW+++I+ + Q G    +++++ +M+L   V    + A +IS C+ +  + 
Sbjct: 62  DEMFEKNLVSWSAMISGYDQAGEPQMAIDLYSQMFL---VPNEYVFASVISACASLSAVT 118

Query: 147 LGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGC 206
           LG++IH+  +  G +E   FVS +L+ +Y KC+    AL VF      N VS+ A+I+G 
Sbjct: 119 LGQKIHSRSLKFG-YESISFVSNSLISMYMKCNQCSDALSVFTNTPEPNCVSYNALITGF 177

Query: 207 IDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDH 266
           +++Q  + G++ F+ M+++G+ P R     VL  C    +L+ G  +H        D   
Sbjct: 178 VENQQLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTENLKRGAELHCQTVKLNLDSTP 237

Query: 267 HLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRL 326
            +   ++ MY E    +  A   F   + KDV+ W+++I   S   D ++ +++F  M  
Sbjct: 238 FIGNVIITMYSELN-LIQEAEKAFRLIEEKDVISWNTLIAACSHCDDHAKGLRVFKHMTE 296

Query: 327 E-RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSIT 385
           E  + P+  T  + L++C   + +SHG  +H ++M+  L  D+ +GNAL+NMY+KCG I 
Sbjct: 297 ETNVRPDDFTFTSALAACAGLASMSHGKQIHAHLMRTRLYQDLGVGNALVNMYAKCGCIG 356

Query: 386 SSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
            ++ IF++M   + VSW T+I+G+G HG GE A++LF +M  SG+ PD++T + +L+ACN
Sbjct: 357 YAYDIFSKMVHHNLVSWNTIIAGFGNHGLGERAVELFEQMNASGIRPDSVTFIGLLTACN 416

Query: 446 HAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRIL 505
           HAGLV + +  FN++ +   IA  IEH++C +D+LG++G++ +A + +   P      +L
Sbjct: 417 HAGLVDKGQLYFNSMEETYGIAPDIEHFSCLIDMLGRAGRLNEAEEYMRKFPFWNDPVVL 476

Query: 506 SSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAK 565
            SL+SA R+HG + + E LA  L++ +P   + Y LLS + +  G W    E  + ++  
Sbjct: 477 VSLLSASRLHGDVVIGERLAKWLLKLQPVTTSPYVLLSNLYASDGMWDSVAEARKRLKGS 536

Query: 566 GLSKSYGFSRIE 577
           GL K  G S IE
Sbjct: 537 GLKKEPGHSLIE 548


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 195/566 (34%), Positives = 309/566 (54%), Gaps = 18/566 (3%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           N    P  +KAC+    H H G  +H  A+ +G  AD  +S +L+ MY K +    A  +
Sbjct: 9   NNYTFPFALKACSALADH-HCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHI 67

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK--AELLAGIISLCSQIG 143
           F  MP RD ++WN+++  +  +G Y  ++     M +    L+  A  L  ++ L +Q G
Sbjct: 68  FATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQG 127

Query: 144 ELELGRQIHALVI---------VDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
            L  G  +HA  I                 V + TALLD+Y+KC   L A RVF+ M  R
Sbjct: 128 ALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPAR 187

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV---KPTRVTLTIVLLACAELRDLRNGK 251
           NEV+W+A+I G +          LF+AM  +G+    PT  ++   L ACA L  LR G+
Sbjct: 188 NEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT--SIASALRACASLDHLRMGE 245

Query: 252 AIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQS 311
            +H      G   D     +L+ MY +    +  A  +F+   VKD V +S+++ GY Q+
Sbjct: 246 QLHALLAKSGVHADLTAGNSLLSMYAK-AGLIDQAIALFDEMAVKDTVSYSALVSGYVQN 304

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
           G   EA  +F +M+   +EP++ T+++++ +C+  + L HG   H  ++  GL  + SI 
Sbjct: 305 GRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSIC 364

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
           NAL++MY+KCG I  S Q+FN M +RD VSW T+I+GYG HG G+EA  LFLEM   G  
Sbjct: 365 NALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFP 424

Query: 432 PDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACK 491
           PD +T + +LSAC+H+GLV E +  F+ +     +   +EHY C VDLL + G +++A +
Sbjct: 425 PDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYE 484

Query: 492 VVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGN 551
            + +MP++   R+  +L+ ACR++  +++ + ++  + E  PE   N+ LLS + S +G 
Sbjct: 485 FIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGR 544

Query: 552 WLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +  A EV  + + +G  KS G S IE
Sbjct: 545 FDEAAEVRIIQKVQGFKKSPGCSWIE 570



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 169/344 (49%), Gaps = 23/344 (6%)

Query: 222 MQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTE 281
           M R  V P   T    L AC+ L D   G+AIH +A   G   D  +S AL+ MY +C  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCA- 59

Query: 282 ALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK--LFSRMRLERIEPNSVTLLAI 339
            L  A  IF     +D+V W++++ GY+  G    A+   L  +M++ R+ PN+ TL+A+
Sbjct: 60  CLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVAL 119

Query: 340 LSSCTRQSFLSHGLGVHCYIMKAGLNFD----------VSIGNALMNMYSKCGSITSSHQ 389
           L    +Q  L+ G  VH Y ++A L+ +          V +G AL++MY+KCGS+  + +
Sbjct: 120 LPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARR 179

Query: 390 IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG---VEPDAITVLAILSACNH 446
           +F+ M AR+ V+W+ LI G+       +A  LF  M   G   + P +I   + L AC  
Sbjct: 180 VFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACAS 237

Query: 447 AGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILS 506
              ++  E L + ++ +  +   +      + +  K+G I+ A  +   M +K  T   S
Sbjct: 238 LDHLRMGEQL-HALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVK-DTVSYS 295

Query: 507 SLVSACRIHGRLEVAEML--AHQLIEAEPENAANYTLLSMVCSE 548
           +LVS    +GR E A ++    Q    EP+ A   +L+   CS 
Sbjct: 296 ALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIP-ACSH 338


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 189/571 (33%), Positives = 320/571 (56%), Gaps = 6/571 (1%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E  L ++ +E+  SGL  +   + S++ ACA     Q  G QLH    K+G  +D ++  
Sbjct: 226 EHALEIF-EEMQFSGLSPDCVTISSLLAACASLGDLQK-GTQLHSYLFKAGISSDYIMEG 283

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           SL+ +Y K    E+A  +F+     + + WN ++  F Q     +S E+F +M   G   
Sbjct: 284 SLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRP 343

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL-IALR 186
                  I+  C+   E++LG QIH+L +  G FE  ++VS  L+D+YSK + WL  A R
Sbjct: 344 NQFTYPCILRTCTCTREIDLGEQIHSLSVKTG-FESDMYVSGVLIDMYSK-YGWLEKARR 401

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           V E +  ++ VSWT+MI+G +  +     +  F+ MQ+ G+ P  + L   +  CA +  
Sbjct: 402 VLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINA 461

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           +R G  IH   Y  G+  D  +  AL+++Y  C   +  A   FE  ++KD +  + ++ 
Sbjct: 462 MRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGR-IREAFSSFEEMELKDGITGNGLVS 520

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           G++QSG   EA+K+F RM    ++ N  T ++ LS+    + +  G  +H  ++K G +F
Sbjct: 521 GFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSF 580

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           +  +GNAL+++Y KCGS   +   F+EM+ R+ VSW T+I+    HG G EAL LF +M+
Sbjct: 581 ETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMK 640

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
           + G++P+ +T + +L+AC+H GLV+E  + F ++  E  I    +HYAC +D+ G++G++
Sbjct: 641 KEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQL 700

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546
           + A K +  MP+     +  +L+SAC++H  +EV E  A  L+E EP ++A+Y LLS   
Sbjct: 701 DRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAY 760

Query: 547 SESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           + +  W   ++V ++MR +G+ K  G S IE
Sbjct: 761 AVTEKWANRDQVRKMMRDRGVRKEPGRSWIE 791



 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 162/544 (29%), Positives = 276/544 (50%), Gaps = 7/544 (1%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E+ L LY+Q +H +G+     +L SV+ +C  A+     G  +H    K G  ++  + N
Sbjct: 125 EEALGLYRQ-MHRAGVVPTPYVLSSVLSSCTKAELFAQ-GRLIHAQGYKHGFCSEIFVGN 182

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           ++I++Y +      A ++F +MP+RDT+++N++I+   Q G    +LE+F EM   G   
Sbjct: 183 AVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSP 242

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
               ++ +++ C+ +G+L+ G Q+H+ +   G       +  +LLDLY KC     AL +
Sbjct: 243 DCVTISSLLAACASLGDLQKGTQLHSYLFKAG-ISSDYIMEGSLLDLYVKCGDVETALVI 301

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F      N V W  M+       +     +LF  MQ  G++P + T   +L  C   R++
Sbjct: 302 FNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREI 361

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
             G+ IH  +   GF+ D ++S  L+ MY +    L  AR + E  K KDVV W+S+I G
Sbjct: 362 DLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYG-WLEKARRVLEMLKEKDVVSWTSMIAG 420

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
           Y Q     +A+  F  M+   I P+++ L + +S C   + +  GL +H  I  +G + D
Sbjct: 421 YVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGD 480

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
           VSI NAL+N+Y++CG I  +   F EM  +D ++   L+SG+   G  EEAL++F+ M +
Sbjct: 481 VSIWNALVNLYARCGRIREAFSSFEEMELKDGITGNGLVSGFAQSGLHEEALKVFMRMDQ 540

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487
           SGV+ +  T ++ LSA  +   +K+ + +   V+K    +   E     + L GK G  E
Sbjct: 541 SGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGH-SFETEVGNALISLYGKCGSFE 599

Query: 488 DACKVVSTMPMKPSTRILSSLVSACRIHGR-LEVAEMLAHQLIEAEPENAANYTLLSMVC 546
           DA    S M  +      ++++++C  HGR LE  ++      E    N   +  +   C
Sbjct: 600 DAKMEFSEMSERNEVS-WNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAAC 658

Query: 547 SESG 550
           S  G
Sbjct: 659 SHVG 662



 Score =  228 bits (580), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 132/466 (28%), Positives = 243/466 (52%), Gaps = 3/466 (0%)

Query: 34  IKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRD 93
           ++AC           ++H  A+  G     ++ N LI +Y+K      A ++F+E+  RD
Sbjct: 48  LRACRGNGRRWQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARD 107

Query: 94  TISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHA 153
            +SW ++++ + QNG    +L ++R+M+  G V    +L+ ++S C++      GR IHA
Sbjct: 108 NVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHA 167

Query: 154 LVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYD 213
                G F   +FV  A++ LY +C  + +A RVF  M  R+ V++  +ISG     + +
Sbjct: 168 QGYKHG-FCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGE 226

Query: 214 TGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALM 273
             +++F  MQ  G+ P  VT++ +L ACA L DL+ G  +H Y +  G   D+ +  +L+
Sbjct: 227 HALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLL 286

Query: 274 HMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNS 333
            +Y +C + +  A +IF  +   +VV+W+ ++  + Q  DL+++ +LF +M+   I PN 
Sbjct: 287 DLYVKCGD-VETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQ 345

Query: 334 VTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNE 393
            T   IL +CT    +  G  +H   +K G   D+ +   L++MYSK G +  + ++   
Sbjct: 346 FTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEM 405

Query: 394 MAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEA 453
           +  +D VSWT++I+GY  H   ++AL  F EMQ+ G+ PD I + + +S C     +++ 
Sbjct: 406 LKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQG 465

Query: 454 ETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
             +   +      +  +  +   V+L  + G+I +A      M +K
Sbjct: 466 LQIHARIYV-SGYSGDVSIWNALVNLYARCGRIREAFSSFEEMELK 510



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 157/308 (50%), Gaps = 19/308 (6%)

Query: 191 MVIRNEVSWTAMISGCIDSQNYDTGIDLF--RAMQREGVKPTRVTLTIVLLACAELRDLR 248
           M  R   S    ++G +  ++    + LF  +A Q  G+ P       +  ACA LR  R
Sbjct: 1   MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHGGLGP-------LDFACA-LRACR 52

Query: 249 -NGK------AIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
            NG+       IH  A   G      +   L+ +Y +    L PAR +FE    +D V W
Sbjct: 53  GNGRRWQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVL-PARRVFEELSARDNVSW 111

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
            +++ GY+Q+G   EA+ L+ +M    + P    L ++LSSCT+    + G  +H    K
Sbjct: 112 VAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYK 171

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
            G   ++ +GNA++ +Y +CGS   + ++F +M  RD V++ TLISG+   G+GE AL++
Sbjct: 172 HGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEI 231

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
           F EMQ SG+ PD +T+ ++L+AC   G +++   L + + K   I+         +DL  
Sbjct: 232 FEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFK-AGISSDYIMEGSLLDLYV 290

Query: 482 KSGKIEDA 489
           K G +E A
Sbjct: 291 KCGDVETA 298


>gi|357480155|ref|XP_003610363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511418|gb|AES92560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 734

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 193/568 (33%), Positives = 321/568 (56%), Gaps = 5/568 (0%)

Query: 11  LHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLI 70
           + L+++ +  + +  N   L  V  A A   +    G Q H  A+K+G   D  + +SL+
Sbjct: 102 ISLFRRMMRANNVIPNAHTLAGVFSA-ASNLSDVVAGKQAHSVAVKTGCSGDVYVGSSLL 160

Query: 71  SMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE 130
           +MY K      A +LFD MP R+T+SW ++I+ +  +    +++E+F  M     +    
Sbjct: 161 NMYCKTGFVFDARKLFDRMPERNTVSWATMISGYASSDIADKAVEVFELMRREEEIQNEF 220

Query: 131 LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQ 190
            L  ++S  +    +  GRQ+H+L I +G   + V V+ AL+ +Y+KC     A+R FE 
Sbjct: 221 ALTSVLSALTSDVFVYTGRQVHSLAIKNGLLAI-VSVANALVTMYAKCGSLDDAVRTFEF 279

Query: 191 MVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNG 250
              +N ++W+AM++G     + D  + LF  M   GV P+  TL  V+ AC++L  +  G
Sbjct: 280 SGDKNSITWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGVINACSDLCAVVEG 339

Query: 251 KAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQ 310
           K +H +A+  GF    ++ +A++ MY +C  +L  AR  FE  +  DVV+W+SII GY Q
Sbjct: 340 KQMHSFAFKLGFGLQLYVLSAVVDMYAKCG-SLADARKGFECVQQPDVVLWTSIITGYVQ 398

Query: 311 SGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSI 370
           +GD    + L+ +M++ER+ PN +T+ ++L +C+  + L  G  +H  I+K G   +V I
Sbjct: 399 NGDYEGGLNLYGKMQMERVIPNELTMASVLRACSSLAALDQGKQMHARIIKYGFKLEVPI 458

Query: 371 GNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV 430
           G+AL  MY+KCGS+   + IF  M +RD +SW  +ISG   +G+G +AL+LF +M   G+
Sbjct: 459 GSALSAMYTKCGSLDDGYLIFWRMPSRDVISWNAMISGLSQNGHGNKALELFEKMLLEGI 518

Query: 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDAC 490
           +PD +T + +LSAC+H GLV      F  +  E  IA  +EHYAC VD+L ++GK+ +A 
Sbjct: 519 KPDPVTFVNLLSACSHMGLVDRGWEYFKMMFDEFNIAPMVEHYACMVDILSRAGKLNEAK 578

Query: 491 KVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE-AEPENAANYTLLSMVCSES 549
           + + +  +     +   L+ AC+ H   E+      +L+E   PE++A Y LLS + +  
Sbjct: 579 EFIESATVDHGLCLWRILLGACKNHRNYELGVYAGEKLVELGSPESSA-YVLLSSIYTAL 637

Query: 550 GNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           G+    E V R+M+A+G++K  G S IE
Sbjct: 638 GDRENVERVRRIMKARGVNKEPGCSWIE 665



 Score =  221 bits (564), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 146/511 (28%), Positives = 260/511 (50%), Gaps = 11/511 (2%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEM--PYRDTISWNSIINCF 104
           G  LH   LK+GS +   ++N+ +++YAK +    A  LFD +    +D +SWNS+IN F
Sbjct: 30  GRTLHARILKTGSISSIYVTNTFLNLYAKTNHLSHALTLFDSINDNDKDDVSWNSLINAF 89

Query: 105 TQNGFYVR---SLEMFREMYLCGFVL-KAELLAGIISLCSQIGELELGRQIHALVIVDGS 160
           +QN        ++ +FR M     V+  A  LAG+ S  S + ++  G+Q H++ +  G 
Sbjct: 90  SQNHSSSSSSFAISLFRRMMRANNVIPNAHTLAGVFSAASNLSDVVAGKQAHSVAVKTGC 149

Query: 161 FELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFR 220
               V+V ++LL++Y K      A ++F++M  RN VSW  MISG   S   D  +++F 
Sbjct: 150 -SGDVYVGSSLLNMYCKTGFVFDARKLFDRMPERNTVSWATMISGYASSDIADKAVEVFE 208

Query: 221 AMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECT 280
            M+RE        LT VL A      +  G+ +H  A   G      ++ AL+ MY +C 
Sbjct: 209 LMRREEEIQNEFALTSVLSALTSDVFVYTGRQVHSLAIKNGLLAIVSVANALVTMYAKCG 268

Query: 281 EALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAIL 340
            +L  A   FE +  K+ + WS+++ GY+Q GD  +A+KLF++M    + P+  TL+ ++
Sbjct: 269 -SLDDAVRTFEFSGDKNSITWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGVI 327

Query: 341 SSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFV 400
           ++C+    +  G  +H +  K G    + + +A+++MY+KCGS+  + + F  +   D V
Sbjct: 328 NACSDLCAVVEGKQMHSFAFKLGFGLQLYVLSAVVDMYAKCGSLADARKGFECVQQPDVV 387

Query: 401 SWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNV 460
            WT++I+GY  +G  E  L L+ +MQ   V P+ +T+ ++L AC+    + + + +   +
Sbjct: 388 LWTSIITGYVQNGDYEGGLNLYGKMQMERVIPNELTMASVLRACSSLAALDQGKQMHARI 447

Query: 461 MKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEV 520
           +K     L +   +    +  K G ++D   +   MP +      ++++S    +G    
Sbjct: 448 IK-YGFKLEVPIGSALSAMYTKCGSLDDGYLIFWRMPSRDVIS-WNAMISGLSQNGHGNK 505

Query: 521 A-EMLAHQLIEAEPENAANYTLLSMVCSESG 550
           A E+    L+E    +   +  L   CS  G
Sbjct: 506 ALELFEKMLLEGIKPDPVTFVNLLSACSHMG 536



 Score = 47.4 bits (111), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 99/214 (46%), Gaps = 11/214 (5%)

Query: 324 MRLERI-EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCG 382
           M L +I  P    LL  L  CT    +  G  +H  I+K G    + + N  +N+Y+K  
Sbjct: 1   MSLPKIFPPQHRQLLQDLIECTHNKNILKGRTLHARILKTGSISSIYVTNTFLNLYAKTN 60

Query: 383 SITSSHQIFNEM--AARDFVSWTTLISGYGFHGYGEE---ALQLFLE-MQESGVEPDAIT 436
            ++ +  +F+ +    +D VSW +LI+ +  +        A+ LF   M+ + V P+A T
Sbjct: 61  HLSHALTLFDSINDNDKDDVSWNSLINAFSQNHSSSSSSFAISLFRRMMRANNVIPNAHT 120

Query: 437 VLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
           +  + SA ++   V   +   ++V  +   +  +   +  +++  K+G + DA K+   M
Sbjct: 121 LAGVFSAASNLSDVVAGKQA-HSVAVKTGCSGDVYVGSSLLNMYCKTGFVFDARKLFDRM 179

Query: 497 PMKPSTR---ILSSLVSACRIHGRLEVAEMLAHQ 527
           P + +     ++S   S+      +EV E++  +
Sbjct: 180 PERNTVSWATMISGYASSDIADKAVEVFELMRRE 213


>gi|356561794|ref|XP_003549163.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Glycine max]
          Length = 615

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 195/576 (33%), Positives = 312/576 (54%), Gaps = 7/576 (1%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           F+ QTL++Y    H SG++ N    P ++KACA   + QH G  LH   LK G  AD  +
Sbjct: 26  FFTQTLNIYSSMAH-SGVHGNNLTYPLLLKACANLPSIQH-GTMLHGHVLKLGFQADTFV 83

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
             +L+ MY+K S   SA Q+FDEMP R  +SWN++++ +++     ++L + +EM++ GF
Sbjct: 84  QTALVDMYSKCSHVASARQVFDEMPQRSVVSWNAMVSAYSRRSSMDQALSLLKEMWVLGF 143

Query: 126 VLKAELLAGIISLCSQIGELE---LGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL 182
              A     I+S  S +   E   LG+ IH  +I  G   L V ++ +L+ +Y +     
Sbjct: 144 EPTASTFVSILSGYSNLDSFEFHLLGKSIHCCLIKLGIVYLEVSLANSLMGMYVQFCLMD 203

Query: 183 IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
            A +VF+ M  ++ +SWT MI G +   +      LF  MQ + V    V    ++  C 
Sbjct: 204 EARKVFDLMDEKSIISWTTMIGGYVKIGHAVEAYGLFYQMQHQSVGIDFVVFLNLISGCI 263

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
           ++RDL    ++H     CG +    +   L+ MY +C   L  AR IF+    K ++ W+
Sbjct: 264 QVRDLLLASSVHSLVLKCGCNEKDPVENLLITMYAKCGN-LTSARRIFDLIIEKSMLSWT 322

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
           S+I GY   G   EA+ LF RM    I PN  TL  ++S+C     LS G  +  YI   
Sbjct: 323 SMIAGYVHLGHPGEALDLFRRMIRTDIRPNGATLATVVSACADLGSLSIGQEIEEYIFLN 382

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
           GL  D  +  +L++MYSKCGSI  + ++F  +  +D   WT++I+ Y  HG G EA+ LF
Sbjct: 383 GLESDQQVQTSLIHMYSKCGSIVKAREVFERVTDKDLTVWTSMINSYAIHGMGNEAISLF 442

Query: 423 LEMQES-GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
            +M  + G+ PDAI   ++  AC+H+GLV+E    F ++ K+  I   +EH  C +DLLG
Sbjct: 443 HKMTTAEGIMPDAIVYTSVFLACSHSGLVEEGLKYFKSMQKDFGITPTVEHCTCLIDLLG 502

Query: 482 KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTL 541
           + G+++ A   +  MP     ++   L+SACRIHG +E+ E+   +L+++ P ++ +Y L
Sbjct: 503 RVGQLDLALNAIQGMPPDVQAQVWGPLLSACRIHGNVELGELATVRLLDSSPGSSGSYVL 562

Query: 542 LSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           ++ + +  G W  A  +   M  KGL K  G+S++E
Sbjct: 563 MANLYTSLGKWKEAHMMRNSMDGKGLVKESGWSQVE 598



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 139/474 (29%), Positives = 235/474 (49%), Gaps = 28/474 (5%)

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQI 151
           R   +WN +I   T NGF+ ++L ++  M   G          ++  C+ +  ++ G  +
Sbjct: 9   RSLYTWNLMIRDSTNNGFFTQTLNIYSSMAHSGVHGNNLTYPLLLKACANLPSIQHGTML 68

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQN 211
           H  V+  G F+   FV TAL+D+YSKC H   A +VF++M  R+ VSW AM+S      +
Sbjct: 69  HGHVLKLG-FQADTFVQTALVDMYSKCSHVASARQVFDEMPQRSVVSWNAMVSAYSRRSS 127

Query: 212 YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN---GKAIHGYAYCCGFD----- 263
            D  + L + M   G +PT  T   +L   + L        GK+IH    CC        
Sbjct: 128 MDQALSLLKEMWVLGFEPTASTFVSILSGYSNLDSFEFHLLGKSIH----CCLIKLGIVY 183

Query: 264 FDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSR 323
            +  L+ +LM MY +    +  AR +F+    K ++ W+++I GY + G   EA  LF +
Sbjct: 184 LEVSLANSLMGMYVQFC-LMDEARKVFDLMDEKSIISWTTMIGGYVKIGHAVEAYGLFYQ 242

Query: 324 MRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS 383
           M+ + +  + V  L ++S C +   L     VH  ++K G N    + N L+ MY+KCG+
Sbjct: 243 MQHQSVGIDFVVFLNLISGCIQVRDLLLASSVHSLVLKCGCNEKDPVENLLITMYAKCGN 302

Query: 384 ITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
           +TS+ +IF+ +  +  +SWT++I+GY   G+  EAL LF  M  + + P+  T+  ++SA
Sbjct: 303 LTSARRIFDLIIEKSMLSWTSMIAGYVHLGHPGEALDLFRRMIRTDIRPNGATLATVVSA 362

Query: 444 CNHAGLVK-----EAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPM 498
           C   G +      E     N +  ++++  ++ H      +  K G I  A +V   +  
Sbjct: 363 CADLGSLSIGQEIEEYIFLNGLESDQQVQTSLIH------MYSKCGSIVKAREVFERVTD 416

Query: 499 KPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEP--ENAANYTLLSMVCSESG 550
           K  T + +S++++  IHG    A  L H++  AE    +A  YT + + CS SG
Sbjct: 417 KDLT-VWTSMINSYAIHGMGNEAISLFHKMTTAEGIMPDAIVYTSVFLACSHSG 469



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 112/433 (25%), Positives = 202/433 (46%), Gaps = 51/433 (11%)

Query: 194 RNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAI 253
           R+  +W  MI    ++  +   ++++ +M   GV    +T  ++L ACA L  +++G  +
Sbjct: 9   RSLYTWNLMIRDSTNNGFFTQTLNIYSSMAHSGVHGNNLTYPLLLKACANLPSIQHGTML 68

Query: 254 HGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGD 313
           HG+    GF  D  +  AL+ MY +C+  +  AR +F+    + VV W++++  YS+   
Sbjct: 69  HGHVLKLGFQADTFVQTALVDMYSKCSH-VASARQVFDEMPQRSVVSWNAMVSAYSRRSS 127

Query: 314 LSEAMKLFSRMRLERIEPNSVTLLAILSSCTR-QSFLSHGLG--VHCYIMKAGLNF-DVS 369
           + +A+ L   M +   EP + T ++ILS  +   SF  H LG  +HC ++K G+ + +VS
Sbjct: 128 MDQALSLLKEMWVLGFEPTASTFVSILSGYSNLDSFEFHLLGKSIHCCLIKLGIVYLEVS 187

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
           + N+LM MY +   +  + ++F+ M  +  +SWTT+I GY   G+  EA  LF +MQ   
Sbjct: 188 LANSLMGMYVQFCLMDEARKVFDLMDEKSIISWTTMIGGYVKIGHAVEAYGLFYQMQHQS 247

Query: 430 VEPDAITVLAILSACNHA-----------------------------------GLVKEAE 454
           V  D +  L ++S C                                      G +  A 
Sbjct: 248 VGIDFVVFLNLISGCIQVRDLLLASSVHSLVLKCGCNEKDPVENLLITMYAKCGNLTSAR 307

Query: 455 TLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRI 514
            +F+ ++ EK +       A YV  LG  G+  D  + +    ++P+   L+++VSAC  
Sbjct: 308 RIFDLII-EKSMLSWTSMIAGYVH-LGHPGEALDLFRRMIRTDIRPNGATLATVVSACAD 365

Query: 515 HGRLEVAEMLAHQLI--EAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLS---- 568
            G L + + +   +     E +     +L+ M  S+ G+ + A EV+  +  K L+    
Sbjct: 366 LGSLSIGQEIEEYIFLNGLESDQQVQTSLIHMY-SKCGSIVKAREVFERVTDKDLTVWTS 424

Query: 569 --KSYGFSRIENE 579
              SY    + NE
Sbjct: 425 MINSYAIHGMGNE 437


>gi|296090287|emb|CBI40106.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 183/552 (33%), Positives = 318/552 (57%), Gaps = 7/552 (1%)

Query: 27  TAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLF 86
           T  L S++  C+  +  +  GL LH   LK+G+ +D  +SN +++MYAK      A Q+F
Sbjct: 3   TETLSSLLHHCSKTKALR-CGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVF 61

Query: 87  DEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELE 146
           DEM  ++ +SW+++I+ + Q G    +++++ +M+L   V    + A +IS C+ +  + 
Sbjct: 62  DEMFEKNLVSWSAMISGYDQAGEPQMAIDLYSQMFL---VPNEYVFASVISACASLSAVT 118

Query: 147 LGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGC 206
           LG++IH+  +  G +E   FVS +L+ +Y KC+    AL VF      N VS+ A+I+G 
Sbjct: 119 LGQKIHSRSLKFG-YESISFVSNSLISMYMKCNQCSDALSVFTNTPEPNCVSYNALITGF 177

Query: 207 IDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDH 266
           +++Q  + G++ F+ M+++G+ P R     VL  C    +L+ G  +H        D   
Sbjct: 178 VENQQLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTENLKRGAELHCQTVKLNLDSTP 237

Query: 267 HLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRL 326
            +   ++ MY E    +  A   F   + KDV+ W+++I   S   D ++ +++F  M  
Sbjct: 238 FIGNVIITMYSELN-LIQEAEKAFRLIEEKDVISWNTLIAACSHCDDHAKGLRVFKHMTE 296

Query: 327 E-RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSIT 385
           E  + P+  T  + L++C   + +SHG  +H ++M+  L  D+ +GNAL+NMY+KCG I 
Sbjct: 297 ETNVRPDDFTFTSALAACAGLASMSHGKQIHAHLMRTRLYQDLGVGNALVNMYAKCGCIG 356

Query: 386 SSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
            ++ IF++M   + VSW T+I+G+G HG GE A++LF +M  SG+ PD++T + +L+ACN
Sbjct: 357 YAYDIFSKMVHHNLVSWNTIIAGFGNHGLGERAVELFEQMNASGIRPDSVTFIGLLTACN 416

Query: 446 HAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRIL 505
           HAGLV + +  FN++ +   IA  IEH++C +D+LG++G++ +A + +   P      +L
Sbjct: 417 HAGLVDKGQLYFNSMEETYGIAPDIEHFSCLIDMLGRAGRLNEAEEYMRKFPFWNDPVVL 476

Query: 506 SSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAK 565
            SL+SA R+HG + + E LA  L++ +P   + Y LLS + +  G W    E  + ++  
Sbjct: 477 VSLLSASRLHGDVVIGERLAKWLLKLQPVTTSPYVLLSNLYASDGMWDSVAEARKRLKGS 536

Query: 566 GLSKSYGFSRIE 577
           GL K  G S IE
Sbjct: 537 GLKKEPGHSLIE 548


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  345 bits (884), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 182/536 (33%), Positives = 307/536 (57%), Gaps = 12/536 (2%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G ++H   + +G  ++     +++++YAK  + E AY++F+ MP RD +SWN+++  + Q
Sbjct: 161 GREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQ 220

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           NGF  R++++  +M   G    +  L  ++   + +  L +GR IH      G FE  V 
Sbjct: 221 NGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAG-FEYMVN 279

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           V+TA+LD Y KC     A  VF+ M  RN VSW  MI G   +   +     F  M  EG
Sbjct: 280 VATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEG 339

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           V+PT V++   L ACA L DL  G+ +H         FD  +  +L+ MY +C + +  A
Sbjct: 340 VEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKC-KRVDIA 398

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILS----- 341
             +F   K K VV W+++I GY+Q+G ++EA+ LF  M+   I+P+S TL+++++     
Sbjct: 399 ASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADL 458

Query: 342 SCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS 401
           S TRQ+   HGL +   + K     +V +  AL++ ++KCG+I ++ ++F+ M  R  ++
Sbjct: 459 SVTRQAKWIHGLAIRTLMDK-----NVFVCTALIDTHAKCGAIQTARKLFDLMQERHVIT 513

Query: 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVM 461
           W  +I GYG +G+G EAL LF EMQ   V+P+ IT L++++AC+H+GLV+E    F ++ 
Sbjct: 514 WNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMK 573

Query: 462 KEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA 521
           +   +   ++HY   VDLLG++G+++DA K +  MP+KP   +L +++ ACRIH  +E+ 
Sbjct: 574 ENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAMLGACRIHKNVELG 633

Query: 522 EMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           E  A +L + +P++   + LL+ + + +  W     V   M  KG+ K+ G S +E
Sbjct: 634 EKTADELFDLDPDDGGYHVLLANMYASASMWDKVARVRTAMEKKGIQKTPGCSLVE 689



 Score =  229 bits (585), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 130/446 (29%), Positives = 247/446 (55%), Gaps = 11/446 (2%)

Query: 55  LKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSL 114
           +K+G   + +    LIS++ KF+    A ++F+ + ++  + +++++  + +N   +R  
Sbjct: 68  IKNGFYNEHLFQTKLISLFCKFNSITEAARVFEPVEHKLDVLYHTMLKGYAKNS-TLRDA 126

Query: 115 EMFREMYLCGFVLKAEL-LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLD 173
             F E   C  V+        ++ L  +  +L  GR+IH +VI +G F+ ++F  TA+++
Sbjct: 127 VRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHGMVITNG-FQSNLFAMTAVVN 185

Query: 174 LYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVT 233
           LY+KC     A ++FE+M  R+ VSW  +++G   +      + +   MQ  G KP  +T
Sbjct: 186 LYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSIT 245

Query: 234 LTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERT 293
           L  VL A A+L+ LR G++IHGYA+  GF++  +++ A++  Y +C  ++  AR++F+  
Sbjct: 246 LVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCG-SVRSARLVFKGM 304

Query: 294 KVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGL 353
             ++VV W+++I GY+Q+G+  EA   F +M  E +EP +V+++  L +C     L  G 
Sbjct: 305 SSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGR 364

Query: 354 GVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHG 413
            VH  + +  + FDVS+ N+L++MYSKC  +  +  +F  +  +  V+W  +I GY  +G
Sbjct: 365 YVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNG 424

Query: 414 YGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFN---NVMKEKKIALAI 470
              EAL LF EMQ   ++PD+ T++++++A     + ++A+ +       + +K + +  
Sbjct: 425 CVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVC- 483

Query: 471 EHYACYVDLLGKSGKIEDACKVVSTM 496
                 +D   K G I+ A K+   M
Sbjct: 484 ---TALIDTHAKCGAIQTARKLFDLM 506



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/417 (27%), Positives = 215/417 (51%), Gaps = 16/417 (3%)

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           ++ LC+ + EL    QI  L+I +G +   +F  T L+ L+ K +    A RVFE +  +
Sbjct: 50  LLELCTSLKELH---QILPLIIKNGFYNEHLF-QTKLISLFCKFNSITEAARVFEPVEHK 105

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
            +V +  M+ G   +      +  +  M+ + V P     T +L    E  DLR G+ IH
Sbjct: 106 LDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIH 165

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
           G     GF  +     A++++Y +C + +  A  +FER   +D+V W++++ GY+Q+G  
Sbjct: 166 GMVITNGFQSNLFAMTAVVNLYAKCRQ-IEDAYKMFERMPQRDLVSWNTVVAGYAQNGFA 224

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
             A+++  +M+    +P+S+TL+++L +      L  G  +H Y  +AG  + V++  A+
Sbjct: 225 RRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAM 284

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           ++ Y KCGS+ S+  +F  M++R+ VSW T+I GY  +G  EEA   FL+M + GVEP  
Sbjct: 285 LDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTN 344

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS 494
           ++++  L AC + G ++    + + ++ EKKI   +      + +  K  +++ A  V  
Sbjct: 345 VSMMGALHACANLGDLERGRYV-HRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFG 403

Query: 495 TMPMKP----STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCS 547
            +  K     +  IL    + C         EM +H +   +P+   ++TL+S++ +
Sbjct: 404 NLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDI---KPD---SFTLVSVITA 454


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 187/569 (32%), Positives = 311/569 (54%), Gaps = 4/569 (0%)

Query: 9    QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
            + + LYKQ +   G+         ++ AC  +  +   G  +H   L+SG  ++  ++N+
Sbjct: 469  EAMKLYKQ-MQSEGVKPGRVTFLHLLSACTNSSAYSD-GKMIHEDILRSGIKSNGHLANA 526

Query: 69   LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
            L++MY +      A  +F+    RD ISWNS+I    Q+G Y  + ++F EM   G    
Sbjct: 527  LMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPD 586

Query: 129  AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
                A ++  C     LELGRQIH L+I  G  +L V +  AL+++Y +C     A  VF
Sbjct: 587  KITFASVLVGCKNPEALELGRQIHMLIIESG-LQLDVNLGNALINMYIRCGSLQDAYEVF 645

Query: 189  EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
              +  RN +SWTAMI G  D        +LF  MQ +G KP + T + +L AC     L 
Sbjct: 646  HSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLD 705

Query: 249  NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
             GK +  +    G++ D  +  AL+  Y + + ++  AR +F++   +D++ W+ +I GY
Sbjct: 706  EGKKVIAHILNSGYELDTGVGNALISAYSK-SGSMTDARKVFDKMPNRDIMSWNKMIAGY 764

Query: 309  SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
            +Q+G    A++   +M+ + +  N  + ++IL++C+  S L  G  VH  I+K  +  DV
Sbjct: 765  AQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDV 824

Query: 369  SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
             +G AL++MY+KCGS+  + ++F+    ++ V+W  +I+ Y  HG   +AL  F  M + 
Sbjct: 825  RVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKE 884

Query: 429  GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIED 488
            G++PD  T  +ILSACNH+GLV E   +F+++  +  ++  IEHY C V LLG++G+ ++
Sbjct: 885  GIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQE 944

Query: 489  ACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSE 548
            A  +++ MP  P   +  +L+ ACRIHG + +AE  A+  ++    N A Y LLS V + 
Sbjct: 945  AETLINQMPFPPDAAVWETLLGACRIHGNVALAEHAANNALKLNARNPAVYVLLSNVYAA 1004

Query: 549  SGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +G W    ++ RVM  +G+ K  G S IE
Sbjct: 1005 AGRWDDVAKIRRVMEGRGIRKEPGRSWIE 1033



 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 138/444 (31%), Positives = 237/444 (53%), Gaps = 3/444 (0%)

Query: 19  HPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSK 78
            P    +N A    +++ C   ++      ++H   +++G   D  +SN LI+MY K   
Sbjct: 74  QPRPTETNRAAYVDLVQNCTRKRSLAE-AKRIHAQMVEAGVGPDIFLSNLLINMYVKCRS 132

Query: 79  PESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISL 138
              A+Q+F +MP RD ISWNS+I+C+ Q GF  ++ ++F EM   GF+        I++ 
Sbjct: 133 VSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTA 192

Query: 139 CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
           C    ELE G++IH+ +I  G ++    V  +LL++Y KC     A +VF  +  R+ VS
Sbjct: 193 CCSPAELEYGKKIHSKIIEAG-YQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVS 251

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258
           +  M+         +  I LF  M  EG+ P +VT   +L A      L  GK IH  A 
Sbjct: 252 YNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAV 311

Query: 259 CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAM 318
             G + D  +  AL  M+  C + +  A+   E    +DVV+++++I   +Q G   EA 
Sbjct: 312 NEGLNSDIRVGTALATMFVRCGD-VAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAF 370

Query: 319 KLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMY 378
           + + +MR + +  N  T L++L++C+    L  G  +H +I + G + DV IGN+L++MY
Sbjct: 371 EQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMY 430

Query: 379 SKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
           ++CG +  + ++FN M  RD +SW  +I+GY       EA++L+ +MQ  GV+P  +T L
Sbjct: 431 ARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFL 490

Query: 439 AILSACNHAGLVKEAETLFNNVMK 462
            +LSAC ++    + + +  ++++
Sbjct: 491 HLLSACTNSSAYSDGKMIHEDILR 514



 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 141/491 (28%), Positives = 257/491 (52%), Gaps = 5/491 (1%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           F ++   L+ +E+  +G   +     S++ AC  +     +G ++H   +++G   DP +
Sbjct: 163 FKKKAFQLF-EEMQTAGFIPSKITYISILTACC-SPAELEYGKKIHSKIIEAGYQRDPRV 220

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
            NSL++MY K     SA Q+F  +  RD +S+N+++  + Q  +    + +F +M   G 
Sbjct: 221 QNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGI 280

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
                    ++   +    L+ G++IH L + +G     + V TAL  ++ +C     A 
Sbjct: 281 PPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEG-LNSDIRVGTALATMFVRCGDVAGAK 339

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
           +  E    R+ V + A+I+      +Y+   + +  M+ +GV   R T   VL AC+  +
Sbjct: 340 QALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSK 399

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
            L  G+ IH +    G   D  +  +L+ MY  C + L  AR +F     +D++ W++II
Sbjct: 400 ALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGD-LPRARELFNTMPKRDLISWNAII 458

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
            GY++  D  EAMKL+ +M+ E ++P  VT L +LS+CT  S  S G  +H  I+++G+ 
Sbjct: 459 AGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIK 518

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            +  + NALMNMY +CGSI  +  +F    ARD +SW ++I+G+  HG  E A +LFLEM
Sbjct: 519 SNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEM 578

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
           ++ G+EPD IT  ++L  C +   ++    + + ++ E  + L +      +++  + G 
Sbjct: 579 KKEGLEPDKITFASVLVGCKNPEALELGRQI-HMLIIESGLQLDVNLGNALINMYIRCGS 637

Query: 486 IEDACKVVSTM 496
           ++DA +V  ++
Sbjct: 638 LQDAYEVFHSL 648



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 126/247 (51%), Gaps = 1/247 (0%)

Query: 217 DLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMY 276
           DL  A Q    +  R     ++  C   R L   K IH      G   D  LS  L++MY
Sbjct: 68  DLSNAYQPRPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMY 127

Query: 277 CECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTL 336
            +C  ++  A  +F +   +DV+ W+S+I  Y+Q G   +A +LF  M+     P+ +T 
Sbjct: 128 VKC-RSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITY 186

Query: 337 LAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA 396
           ++IL++C   + L +G  +H  I++AG   D  + N+L+NMY KC  + S+ Q+F+ +  
Sbjct: 187 ISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYR 246

Query: 397 RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETL 456
           RD VS+ T++  Y    Y EE + LF +M   G+ PD +T + +L A     ++ E + +
Sbjct: 247 RDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRI 306

Query: 457 FNNVMKE 463
               + E
Sbjct: 307 HKLAVNE 313



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 79/130 (60%)

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
           SE   L +  +    E N    + ++ +CTR+  L+    +H  +++AG+  D+ + N L
Sbjct: 64  SEREDLSNAYQPRPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLL 123

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           +NMY KC S++ +HQ+F +M  RD +SW +LIS Y   G+ ++A QLF EMQ +G  P  
Sbjct: 124 INMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSK 183

Query: 435 ITVLAILSAC 444
           IT ++IL+AC
Sbjct: 184 ITYISILTAC 193


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 187/572 (32%), Positives = 328/572 (57%), Gaps = 6/572 (1%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           Y +TL L+   +    L  ++      +KACA +  ++  G+++  +A++ G + +  + 
Sbjct: 111 YRETLELFGL-MRSRNLEVDSCSCTFALKACASSLDYE-MGMEIISSAVEKGMEKNRFVG 168

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           +S+IS   KF K   A ++FD MP +D + WNSII  + Q G +  + ++F EM+  G  
Sbjct: 169 SSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIK 228

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
                +  +I  C  IG L+LG+ +H  V+  G     + V T+ +D+YSK      A  
Sbjct: 229 PSPITMTSLIQACGGIGNLKLGKCMHGYVLGLG-LGNDILVLTSFVDMYSKMGDIESARW 287

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VF +M  RN VSW AMISGC+ +       DLF  + R        T+  +L  C++   
Sbjct: 288 VFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTAS 347

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L  GK +HG A    F+ +  LS A++ +Y +C  +L  A  +F R K ++V+ W++++ 
Sbjct: 348 LATGKILHGCAIR-SFESNLILSTAIVDLYSKCG-SLKQATFVFNRMKDRNVITWTAMLV 405

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           G +Q+G   +A++LF++M+ E I  NSVT ++++ SC     L  G  +H ++ + G  F
Sbjct: 406 GLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFAF 465

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMA-ARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
           D+    AL++MY+KCG I  + +IF+  + ++D V W ++I+GYG HG+G +A+ ++ +M
Sbjct: 466 DIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKM 525

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
            E G++P+  T L++LSAC+H+ LV++  +LFN++ ++  I    +HYAC VDLL ++G+
Sbjct: 526 IEEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSMERDHNIRPIEKHYACLVDLLSRAGR 585

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV 545
            E+A  ++  MP +P T +L +L+S CR H  + +    + +L+  +  N   Y +LS +
Sbjct: 586 FEEAQALIEKMPFQPGTAVLEALLSGCRTHKNINLGIQTSDKLLALDAMNPGIYIMLSNI 645

Query: 546 CSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +E+  W   + +  +MR +GL K+ G+S +E
Sbjct: 646 YAEARRWDKVDYIRGLMRNRGLKKTPGYSLVE 677



 Score =  204 bits (520), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 135/511 (26%), Positives = 259/511 (50%), Gaps = 27/511 (5%)

Query: 51  HCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFY 110
           H   + +    D  ++  L+  Y+     E+A  +FD+      +  N+++  + Q+G Y
Sbjct: 52  HAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQSGRY 111

Query: 111 VRSLEMFREMY---------LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSF 161
             +LE+F  M           C F LKA         C+   + E+G +I +  +  G  
Sbjct: 112 RETLELFGLMRSRNLEVDSCSCTFALKA---------CASSLDYEMGMEIISSAVEKG-M 161

Query: 162 ELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRA 221
           E + FV ++++    K      A RVF+ M  ++ V W ++I G + +  +D    LF  
Sbjct: 162 EKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFE 221

Query: 222 MQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTE 281
           M   G+KP+ +T+T ++ AC  + +L+ GK +HGY    G   D  +  + + MY +  +
Sbjct: 222 MHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGD 281

Query: 282 ALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILS 341
            +  AR +F +   +++V W+++I G  ++G + E+  LF R+       +  T++++L 
Sbjct: 282 -IESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQ 340

Query: 342 SCTRQSFLSHGLGVH-CYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFV 400
            C++ + L+ G  +H C I     N  +S   A++++YSKCGS+  +  +FN M  R+ +
Sbjct: 341 GCSQTASLATGKILHGCAIRSFESNLILS--TAIVDLYSKCGSLKQATFVFNRMKDRNVI 398

Query: 401 SWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNV 460
           +WT ++ G   +G+ E+AL+LF +MQE G+  +++T ++++ +C H G +K   ++  ++
Sbjct: 399 TWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHL 458

Query: 461 MKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEV 520
            +    A  I +    VD+  K GKI  A ++ S   +     + +S+++   +HG    
Sbjct: 459 FR-LGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQ 517

Query: 521 AEMLAHQLIEA--EPENAANYTLLSMVCSES 549
           A  + H++IE   +P      +LLS  CS S
Sbjct: 518 AVGIYHKMIEEGLKPNQTTFLSLLS-ACSHS 547



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 110/399 (27%), Positives = 187/399 (46%), Gaps = 6/399 (1%)

Query: 149 RQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCID 208
           +  HA +I + S     FV+T L+  YS       A  VF+Q      +   AM+ G + 
Sbjct: 49  KSTHAQIITN-SLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQ 107

Query: 209 SQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHL 268
           S  Y   ++LF  M+   ++    + T  L ACA   D   G  I   A   G + +  +
Sbjct: 108 SGRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEKGMEKNRFV 167

Query: 269 SAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER 328
            ++++    +  + +  A+ +F+    KDVV W+SII GY Q+G    A +LF  M    
Sbjct: 168 GSSMISFLVKFGK-IGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSG 226

Query: 329 IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSH 388
           I+P+ +T+ +++ +C     L  G  +H Y++  GL  D+ +  + ++MYSK G I S+ 
Sbjct: 227 IKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESAR 286

Query: 389 QIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG 448
            +F +M  R+ VSW  +ISG   +G   E+  LF  +  S    D  T++++L  C+   
Sbjct: 287 WVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTA 346

Query: 449 LVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSL 508
            +   + L    ++  +  L +      VDL  K G ++ A  V + M  +      + L
Sbjct: 347 SLATGKILHGCAIRSFESNLILS--TAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAML 404

Query: 509 VSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCS 547
           V   + +G  E A  L  Q+ E E   A + T +S+V S
Sbjct: 405 VGLAQ-NGHAEDALRLFAQMQE-EGIAANSVTFVSLVHS 441


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 192/581 (33%), Positives = 325/581 (55%), Gaps = 22/581 (3%)

Query: 13  LYKQELHPSGLYSNTAILPSVIKACAYAQTHQHF--GLQLHCTALKSGSDADPVISNSLI 70
           +  +++ PS        L SV  AC+     +    G Q+H   L+ G + +  I N+L+
Sbjct: 186 MLDEDVEPSSF-----TLVSVALACSNFPMPEGLLMGKQVHAYGLRKG-ELNSFIINTLV 239

Query: 71  SMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE 130
           +MY K  K  S+  L      RD ++WN++++   QN  ++ +LE  REM L G      
Sbjct: 240 AMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGF 299

Query: 131 LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQ 190
            ++ ++  CS +  L  G+++HA  + +GS + + FV +AL+D+Y  C   L   RVF+ 
Sbjct: 300 TISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDG 359

Query: 191 MVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE-GVKPTRVTLTIVLLACAELRDLRN 249
           M  R    W AMI+G   ++  +  + LF  M+   G+     T+  V+ AC        
Sbjct: 360 MFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSK 419

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
            +AIHG+    G D D  +  ALM MY    + +  A+ IF + + +D+V W++II GY 
Sbjct: 420 KEAIHGFVVKRGLDRDRFVQNALMDMYSRLGK-IDIAKRIFGKMEDRDLVTWNTIITGYV 478

Query: 310 QSGDLSEAMKLFSRMR-LER----------IEPNSVTLLAILSSCTRQSFLSHGLGVHCY 358
            S    +A+ +  +M+ LER          ++PNS+TL+ IL SC   S L+ G  +H Y
Sbjct: 479 FSERHEDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIHAY 538

Query: 359 IMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEA 418
            +K  L  DV++G+AL++MY+KCG +  S ++F+++  R+ ++W  ++  YG HG  ++A
Sbjct: 539 AIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAYGMHGNSQDA 598

Query: 419 LQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVD 478
           + +   M   GV+P+ +T +++ +AC+H+G+V E   +F N+ K+  +  + +HYAC VD
Sbjct: 599 IDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDYGVEPSSDHYACVVD 658

Query: 479 LLGKSGKIEDACKVVSTMPMK-PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAA 537
           LLG++G++++A ++++ +P         SSL+ ACRIH  LE+ E+ A  LI+ EP  A+
Sbjct: 659 LLGRAGRVKEAYQLINLIPRNFDKAGAWSSLLGACRIHNNLEIGEIAAQNLIQLEPNVAS 718

Query: 538 NYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIEN 578
           +Y LL+ + S +G W  A EV R M+A+G+ K  G S IE+
Sbjct: 719 HYVLLANIYSSAGLWYKATEVRRNMKAQGVRKEPGCSWIEH 759



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 154/547 (28%), Positives = 273/547 (49%), Gaps = 24/547 (4%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPV-ISNSLISMYAKFSKPE 80
           G+  +    P+++KA A  Q     G Q+H    K G   D V ++N+L+++Y K     
Sbjct: 88  GIKPDNFAFPALLKAVADLQD-MDLGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFG 146

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
           + Y++FD +  R+ +SWNS+I+       +  +LE FR M        +  L  +   CS
Sbjct: 147 AVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPSSFTLVSVALACS 206

Query: 141 QIGELE---LGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197
                E   +G+Q+HA  +  G  EL+ F+   L+ +Y K      +  +      R+ V
Sbjct: 207 NFPMPEGLLMGKQVHAYGLRKG--ELNSFIINTLVAMYGKMGKLASSKVLLGSFEGRDLV 264

Query: 198 SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
           +W  ++S    ++ +   ++  R M  EGV+P   T++ VL AC+ L  LR GK +H YA
Sbjct: 265 TWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYA 324

Query: 258 YCCG-FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
              G  D +  + +AL+ MYC C + L   R +F+    + + +W+++I GY+Q+    E
Sbjct: 325 LKNGSLDENSFVGSALVDMYCNCKQVLSGCR-VFDGMFDRKIGLWNAMITGYAQNEYDEE 383

Query: 317 AMKLFSRMRLER-IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           A+ LF  M     +  NS T+  ++ +C R    S    +H +++K GL+ D  + NALM
Sbjct: 384 ALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALM 443

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ--------- 426
           +MYS+ G I  + +IF +M  RD V+W T+I+GY F    E+AL +  +MQ         
Sbjct: 444 DMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASER 503

Query: 427 --ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSG 484
                ++P++IT++ IL +C     + + + +    +K   +A  +   +  VD+  K G
Sbjct: 504 ASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIK-NNLATDVAVGSALVDMYAKCG 562

Query: 485 KIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA-EMLAHQLIEAEPENAANYTLLS 543
            ++ + KV   +P++ +    + +V A  +HG  + A +ML   +++    N   +  + 
Sbjct: 563 CLQMSRKVFDQIPIR-NVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVF 621

Query: 544 MVCSESG 550
             CS SG
Sbjct: 622 AACSHSG 628



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/407 (27%), Positives = 210/407 (51%), Gaps = 12/407 (2%)

Query: 97  WNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVI 156
           W  ++    ++     ++  + +M + G          ++   + + +++LG+QIHA V 
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVY 120

Query: 157 VDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGI 216
             G    SV V+  L++LY KC  +    +VF+++  RN+VSW ++IS     + ++  +
Sbjct: 121 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 180

Query: 217 DLFRAMQREGVKPTRVTLTIVLLACAEL---RDLRNGKAIHGYAYCCGFDFDHHLSAALM 273
           + FR M  E V+P+  TL  V LAC+       L  GK +H Y    G + +  +   L+
Sbjct: 181 EAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKG-ELNSFIINTLV 239

Query: 274 HMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNS 333
            MY +  + L  ++++    + +D+V W++++    Q+    EA++    M LE +EP+ 
Sbjct: 240 AMYGKMGK-LASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDG 298

Query: 334 VTLLAILSSCTRQSFLSHGLGVHCYIMKAG-LNFDVSIGNALMNMYSKCGSITSSHQIFN 392
            T+ ++L +C+    L  G  +H Y +K G L+ +  +G+AL++MY  C  + S  ++F+
Sbjct: 299 FTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFD 358

Query: 393 EMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES-GVEPDAITVLAILSACNHAGLVK 451
            M  R    W  +I+GY  + Y EEAL LF+EM+ES G+  ++ T+  ++ AC  +G   
Sbjct: 359 GMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFS 418

Query: 452 EAETLFNNVMKEKKIALAIEHYA--CYVDLLGKSGKIEDACKVVSTM 496
           + E +   V+K     L  + +     +D+  + GKI+ A ++   M
Sbjct: 419 KKEAIHGFVVKR---GLDRDRFVQNALMDMYSRLGKIDIAKRIFGKM 462



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 125/250 (50%), Gaps = 17/250 (6%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           + E+ L L+ +    +GL +N+  +  V+ AC  +         +H   +K G D D  +
Sbjct: 380 YDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSK-KEAIHGFVVKRGLDRDRFV 438

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
            N+L+ MY++  K + A ++F +M  RD ++WN+II  +  +  +  +L M  +M +   
Sbjct: 439 QNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQI--L 496

Query: 126 VLKAELLAGIISL-------------CSQIGELELGRQIHALVIVDGSFELSVFVSTALL 172
             KA   A  +SL             C+ +  L  G++IHA  I + +    V V +AL+
Sbjct: 497 ERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKN-NLATDVAVGSALV 555

Query: 173 DLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRV 232
           D+Y+KC    ++ +VF+Q+ IRN ++W  ++       N    ID+ R M  +GVKP  V
Sbjct: 556 DMYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEV 615

Query: 233 TLTIVLLACA 242
           T   V  AC+
Sbjct: 616 TFISVFAACS 625


>gi|242091211|ref|XP_002441438.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor]
 gi|241946723|gb|EES19868.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor]
          Length = 771

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 191/558 (34%), Positives = 322/558 (57%), Gaps = 5/558 (0%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           SG+  N A L SV+ AC   +  + FGL +H   LKSG D+   + N+L+ MY KF   E
Sbjct: 207 SGIPVNVASLVSVVPACG-TERDEGFGLSVHGLVLKSGLDSVVNLGNALVDMYGKFGDLE 265

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
           S+ ++F+ M  ++ +SWNS + CF   GF+   LEMFR M        +  L+ ++    
Sbjct: 266 SSMRVFNGMQEKNEVSWNSALGCFAHAGFHEDVLEMFRVMSEHEVTPGSVTLSSLLPALV 325

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
            +G   LG+++H   I   + E  +F++ +L+D+Y+K      A  +FE +  RN VSW 
Sbjct: 326 DLGYFHLGKEVHGYSIRR-AMESDIFIANSLMDMYAKFGCLEKASAIFENIEGRNVVSWN 384

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
           AMI+    +        L   MQ+ G  P   TL  +L AC+ +  ++ GK IH ++   
Sbjct: 385 AMIANLAQNGAETEAFSLVIEMQKNGECPNSFTLVNLLPACSRVASVKMGKQIHAWSIHR 444

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
               D  +S AL+ +Y +C + L  A+ IF+R++ KD V ++++I GYSQS    E++ L
Sbjct: 445 SLMSDLFVSNALIDVYAKCGQ-LSVAQDIFDRSE-KDDVSYNTLIVGYSQSQCCFESLHL 502

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
           F +MR   IE ++V+ +  LS+C   S    G  +H  +++  LN    + N+L+++Y+K
Sbjct: 503 FQQMRSAGIEYDAVSFMGCLSACANLSAFKQGKEIHGVLVRRLLNTHPFLANSLLDLYTK 562

Query: 381 CGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
            G + ++ +IFN +  +D  SW T+I GYG HG  + A +LF  M++ GV+ D ++ +A+
Sbjct: 563 GGMLATASKIFNRITRKDVASWNTMILGYGMHGQIDVAFELFDLMKDDGVDYDHVSYIAV 622

Query: 441 LSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKP 500
           LSAC+H GLV   +  F+  M  + I     HYAC VDLLG++G++ ++ ++++ MP   
Sbjct: 623 LSACSHGGLVDRGKKYFSQ-MIAQNIKPQQMHYACMVDLLGRAGQLSESVEIITNMPFPA 681

Query: 501 STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWR 560
           ++ +  +L+ +CRIHG +E+A + A  L E +PE++  YTLL  + SESG W  A E+  
Sbjct: 682 NSDVWGALLGSCRIHGDIELARLAAEHLFELKPEHSGYYTLLRNMYSESGMWNEANEIKT 741

Query: 561 VMRAKGLSKSYGFSRIEN 578
           +M+++ + K+  +S +++
Sbjct: 742 LMKSRKVQKNPAYSWVQS 759



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 150/515 (29%), Positives = 260/515 (50%), Gaps = 17/515 (3%)

Query: 43  HQHFGLQLHCTALKSGSD-ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSII 101
           H   G +LH  AL+ G   AD    N+L++ YA   +   A ++FDEMP RD +SWNS++
Sbjct: 126 HPAKGAELHAAALRRGLLLADVFAGNTLVTFYAARGRAADARRVFDEMPARDIVSWNSLV 185

Query: 102 NCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSF 161
           +    NG    +      M   G  +    L  ++  C    +   G  +H LV+  G  
Sbjct: 186 SALLTNGMLEDAKRAVVGMMRSGIPVNVASLVSVVPACGTERDEGFGLSVHGLVLKSG-L 244

Query: 162 ELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGI-DLFR 220
           +  V +  AL+D+Y K      ++RVF  M  +NEVSW + + GC     +   + ++FR
Sbjct: 245 DSVVNLGNALVDMYGKFGDLESSMRVFNGMQEKNEVSWNSAL-GCFAHAGFHEDVLEMFR 303

Query: 221 AMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECT 280
            M    V P  VTL+ +L A  +L     GK +HGY+     + D  ++ +LM MY +  
Sbjct: 304 VMSEHEVTPGSVTLSSLLPALVDLGYFHLGKEVHGYSIRRAMESDIFIANSLMDMYAKFG 363

Query: 281 EALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAIL 340
             L  A  IFE  + ++VV W+++I   +Q+G  +EA  L   M+     PNS TL+ +L
Sbjct: 364 -CLEKASAIFENIEGRNVVSWNAMIANLAQNGAETEAFSLVIEMQKNGECPNSFTLVNLL 422

Query: 341 SSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFV 400
            +C+R + +  G  +H + +   L  D+ + NAL+++Y+KCG ++ +  IF+  + +D V
Sbjct: 423 PACSRVASVKMGKQIHAWSIHRSLMSDLFVSNALIDVYAKCGQLSVAQDIFDR-SEKDDV 481

Query: 401 SWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNV 460
           S+ TLI GY       E+L LF +M+ +G+E DA++ +  LSAC +    K+ + + + V
Sbjct: 482 SYNTLIVGYSQSQCCFESLHLFQQMRSAGIEYDAVSFMGCLSACANLSAFKQGKEI-HGV 540

Query: 461 MKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEV 520
           +  + +          +DL  K G +  A K+ + +  K      ++++    +HG+++V
Sbjct: 541 LVRRLLNTHPFLANSLLDLYTKGGMLATASKIFNRITRKDVAS-WNTMILGYGMHGQIDV 599

Query: 521 AEMLAHQLIEAEPENAANYTLLSMV-----CSESG 550
               A +L +   ++  +Y  +S +     CS  G
Sbjct: 600 ----AFELFDLMKDDGVDYDHVSYIAVLSACSHGG 630



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 140/302 (46%), Gaps = 7/302 (2%)

Query: 149 RQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQ--MVIRNEVSWTAMISGC 206
           R+ HA  +V G+   S+ ++ ALL  Y+       A  +     + +R+   W ++    
Sbjct: 22  RRAHAASLVSGALTASLPLAGALLLSYAALRDIPSARLILRHHPLRLRSAFLWNSLSRAL 81

Query: 207 IDSQNYDTGIDLFRAMQREGVKPTRVTLTIVL-----LACAELRDLRNGKAIHGYAYCCG 261
             +      + ++  M R GV+P   T    L        AE      G  +H  A   G
Sbjct: 82  ASAGLPSEALRVYNCMVRSGVRPDDRTFPFALHAAAAAVVAEAEHPAKGAELHAAALRRG 141

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
                  +   +  +         AR +F+    +D+V W+S++     +G L +A +  
Sbjct: 142 LLLADVFAGNTLVTFYAARGRAADARRVFDEMPARDIVSWNSLVSALLTNGMLEDAKRAV 201

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
             M    I  N  +L++++ +C  +     GL VH  ++K+GL+  V++GNAL++MY K 
Sbjct: 202 VGMMRSGIPVNVASLVSVVPACGTERDEGFGLSVHGLVLKSGLDSVVNLGNALVDMYGKF 261

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
           G + SS ++FN M  ++ VSW + +  +   G+ E+ L++F  M E  V P ++T+ ++L
Sbjct: 262 GDLESSMRVFNGMQEKNEVSWNSALGCFAHAGFHEDVLEMFRVMSEHEVTPGSVTLSSLL 321

Query: 442 SA 443
            A
Sbjct: 322 PA 323


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 178/532 (33%), Positives = 307/532 (57%), Gaps = 7/532 (1%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           Q+H   + SG   +  +SNSL++ Y        A Q+F   P ++ +SW  +I+   +N 
Sbjct: 42  QIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPCKNVVSWTILISGLAKND 101

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
            +V ++++FREM +  F   A  ++ ++   + +G + + + +H    V G FE +VFV 
Sbjct: 102 CFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCF-WVRGGFEGNVFVE 160

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
           TAL+D+YSK     +A ++FE M  RN VSW A++SG  D    +  IDLF  M+R+G+ 
Sbjct: 161 TALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNLMRRKGLL 220

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYC--ECTEALHPA 286
               T+  ++ A   +  L+ G  IHG+    G++ D H+  ALM +Y    C +  H  
Sbjct: 221 VDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHR- 279

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM-RLERIEPNSVTLLAILSSCTR 345
             +F    VKDV  W+ ++ G+S       A+K F++M  ++ ++ +S+ L+ ILSSC+ 
Sbjct: 280 --VFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCSH 337

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
              L  G  VH   +K     ++ +G+A+++MY+ CG++  + + F  M  +D V W  +
Sbjct: 338 SGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAM 397

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           I+G G +GYG +A+ LFL+M+ SG++PD  T +++L AC+HAG+V E   +F +++K   
Sbjct: 398 IAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSH 457

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
               ++HYAC +D+LG++G+++ A   ++ MP +P   + S+L+ ACRIHG +++   ++
Sbjct: 458 DIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEIS 517

Query: 526 HQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            ++ E EP +A  Y LLS + + +GNW G +     +R+K L K  GFS IE
Sbjct: 518 QKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRLKKDPGFSSIE 569



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 138/262 (52%), Gaps = 12/262 (4%)

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
           +L+DL+  + IH      G   +  LS +LM+ Y  C   L  A+ IF  T  K+VV W+
Sbjct: 33  KLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCG-LLADAKQIFHHTPCKNVVSWT 91

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
            +I G +++    EA+ +F  M +   +PN+VT+ ++L +      +     VHC+ ++ 
Sbjct: 92  ILISGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRG 151

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
           G   +V +  AL++MYSK G +  + Q+F  M+ R+ VSW  ++SGY  HG+ EEA+ LF
Sbjct: 152 GFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLF 211

Query: 423 LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK-----EKKIALAIEHYACYV 477
             M+  G+  D  T+++++ A    G ++    +   +++     +K I  A+      +
Sbjct: 212 NLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTAL------M 265

Query: 478 DLLGKSGKIEDACKVVSTMPMK 499
           D+      ++DA +V S M +K
Sbjct: 266 DIYVSHNCVDDAHRVFSEMFVK 287



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 122/238 (51%), Gaps = 4/238 (1%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           F E+ + L+   +   GL  +   + S+I A       Q  G  +H   +++G + D  I
Sbjct: 203 FSEEAIDLFNL-MRRKGLLVDFYTIMSLIPASLSVGCLQ-VGTGIHGFIIRTGYENDKHI 260

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY-LCG 124
             +L+ +Y   +  + A+++F EM  +D  +W  ++  F+    + R+++ F +M  +  
Sbjct: 261 KTALMDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQN 320

Query: 125 FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
             L + +L GI+S CS  G L+ GR++HAL I    F  ++FV +A++D+Y+ C +   A
Sbjct: 321 LKLDSIVLMGILSSCSHSGALQQGRRVHALAI-KTCFANNIFVGSAVIDMYANCGNLEDA 379

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
            R F  M  ++ V W AMI+G   +      IDLF  M+  G+ P   T   VL AC+
Sbjct: 380 KRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACS 437



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/149 (22%), Positives = 71/149 (47%), Gaps = 1/149 (0%)

Query: 3   SKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDAD 62
           S   +++ +  + + L    L  ++ +L  ++ +C+++   Q  G ++H  A+K+    +
Sbjct: 301 SGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQ-GRRVHALAIKTCFANN 359

Query: 63  PVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL 122
             + +++I MYA     E A + F  M  +D + WN++I     NG+   ++++F +M  
Sbjct: 360 IFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKG 419

Query: 123 CGFVLKAELLAGIISLCSQIGELELGRQI 151
            G          ++  CS  G +  G QI
Sbjct: 420 SGLDPDESTFVSVLYACSHAGMVYEGLQI 448


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 182/500 (36%), Positives = 289/500 (57%), Gaps = 23/500 (4%)

Query: 78  KPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS 137
           +PESA++LFD++  RD ISWNS+I+ +  NG   R L ++++M   G  +    +  ++ 
Sbjct: 200 RPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLV 259

Query: 138 LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197
            C+  G L LG+ +H+L I   SFE  +  S  LLD+YSKC     ALRVFE+M  RN V
Sbjct: 260 GCANSGTLSLGKAVHSLAI-KSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVV 318

Query: 198 SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
           SWT+MI+G       D  I L + M++EGVK   V +T +L ACA    L NGK +H Y 
Sbjct: 319 SWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYI 378

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
                + +  +  ALM MY +C  ++  A  +F    VKD++ W+++I      G+L   
Sbjct: 379 KANNMESNLFVCNALMDMYAKCG-SMEAANSVFSTMVVKDIISWNTMI------GEL--- 428

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
                       +P+S T+  +L +C   S L  G  +H YI++ G + D  + NAL+++
Sbjct: 429 ------------KPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDL 476

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           Y KCG +  +  +F+ + ++D VSWT +I+GYG HGYG EA+  F EM+++G+EPD ++ 
Sbjct: 477 YVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSF 536

Query: 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
           ++IL AC+H+GL+++    F  +  +  I   +EHYAC VDLL ++G +  A + + T+P
Sbjct: 537 ISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLP 596

Query: 498 MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEE 557
           + P   I  +L+  CR +  +E+AE +A ++ E EPEN   Y LL+ + +E+  W   + 
Sbjct: 597 IAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKR 656

Query: 558 VWRVMRAKGLSKSYGFSRIE 577
           +   +  +GL K+ G S IE
Sbjct: 657 LREKIGKQGLRKNPGCSWIE 676



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 123/410 (30%), Positives = 213/410 (51%), Gaps = 29/410 (7%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           VS    E+ L +YKQ ++  G+  + A + SV+  CA + T    G  +H  A+KS  + 
Sbjct: 227 VSNGLTERGLGIYKQMMYL-GIDVDLATIISVLVGCANSGTLS-LGKAVHSLAIKSSFER 284

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
               SN+L+ MY+K    + A ++F++M  R+ +SW S+I  +T++G    ++++ ++M 
Sbjct: 285 RINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQME 344

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
             G  L    +  I+  C++ G L+ G+ +H  +  + + E ++FV  AL+D+Y+KC   
Sbjct: 345 KEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKAN-NMESNLFVCNALMDMYAKCGSM 403

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             A  VF  MV+++ +SW  MI                       +KP   T+  VL AC
Sbjct: 404 EAANSVFSTMVVKDIISWNTMIG---------------------ELKPDSRTMACVLPAC 442

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A L  L  GK IHGY    G+  D H++ AL+ +Y +C   L  AR++F+    KD+V W
Sbjct: 443 ASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCG-VLGLARLLFDMIPSKDLVSW 501

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           + +I GY   G  +EA+  F+ MR   IEP+ V+ ++IL +C+    L  G     YIMK
Sbjct: 502 TVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFF-YIMK 560

Query: 362 AGLNFDVSIGN--ALMNMYSKCGSITSSHQIFNEMA-ARDFVSWTTLISG 408
              N +  + +   ++++ S+ G+++ +++    +  A D   W  L+ G
Sbjct: 561 NDFNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAPDATIWGALLCG 610



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 121/497 (24%), Positives = 217/497 (43%), Gaps = 102/497 (20%)

Query: 127 LKAELLAGIISLCSQIGELELGRQIHAL-----VIVDGSFELSVFVSTALLDLYSKCHHW 181
           L+ +    ++ LC+ +     G+++H++     V VDG+  L       L+  Y+ C   
Sbjct: 97  LETKTYGSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLK------LVSFYATCGDL 150

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTR---------- 231
               RVF+ M  +N   W  M+S      ++   I LF+ M  +G++  R          
Sbjct: 151 KEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDK 210

Query: 232 -----------------------------------------VTLTIVLLACAELRDLRNG 250
                                                     T+  VL+ CA    L  G
Sbjct: 211 LCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLG 270

Query: 251 KAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQ 310
           KA+H  A    F+   + S  L+ MY +C + L  A  +FE+   ++VV W+S+I GY++
Sbjct: 271 KAVHSLAIKSSFERRINFSNTLLDMYSKCGD-LDGALRVFEKMGERNVVSWTSMIAGYTR 329

Query: 311 SGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSI 370
            G    A+KL  +M  E ++ + V + +IL +C R   L +G  VH YI    +  ++ +
Sbjct: 330 DGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFV 389

Query: 371 GNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV 430
            NALM+MY+KCGS+ +++ +F+ M  +D +SW T+I        GE             +
Sbjct: 390 CNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI--------GE-------------L 428

Query: 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMK-----EKKIALAIEHYACYVDLLGKSGK 485
           +PD+ T+  +L AC     ++  + +   +++     ++ +A A+      VDL  K G 
Sbjct: 429 KPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANAL------VDLYVKCGV 482

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLS 543
           +  A  +   +P K      + +++   +HG    A    +++ +A  EP+  +  ++L 
Sbjct: 483 LGLARLLFDMIPSKDLVS-WTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISIL- 540

Query: 544 MVCSESGNWLGAEEVWR 560
             CS SG     E+ WR
Sbjct: 541 YACSHSGL---LEQGWR 554



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 70/340 (20%), Positives = 140/340 (41%), Gaps = 64/340 (18%)

Query: 285 PARIIFERTKVKD--VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSS 342
           P RI    T+  D  V  +++ I  + Q GDL  AM+L    +   +E  + T  ++L  
Sbjct: 51  PIRISATPTRTIDHQVTDYNAKILHFCQLGDLENAMELICMCQKSELE--TKTYGSVLQL 108

Query: 343 CTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSIT----------------- 385
           C      + G  VH  I    +  D ++G  L++ Y+ CG +                  
Sbjct: 109 CAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLW 168

Query: 386 ----------------------------------SSHQIFNEMAARDFVSWTTLISGYGF 411
                                             S+ ++F+++  RD +SW ++ISGY  
Sbjct: 169 NFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVS 228

Query: 412 HGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK---EKKIAL 468
           +G  E  L ++ +M   G++ D  T++++L  C ++G +   + + +  +K   E++I  
Sbjct: 229 NGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINF 288

Query: 469 AIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
           +       +D+  K G ++ A +V   M  + +    +S+++     GR + A  L  Q+
Sbjct: 289 S----NTLLDMYSKCGDLDGALRVFEKMGER-NVVSWTSMIAGYTRDGRSDGAIKLLQQM 343

Query: 529 -IEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567
             E    +    T +   C+ SG+    ++V   ++A  +
Sbjct: 344 EKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNM 383


>gi|413946224|gb|AFW78873.1| hypothetical protein ZEAMMB73_227843 [Zea mays]
          Length = 778

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 191/558 (34%), Positives = 322/558 (57%), Gaps = 5/558 (0%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           SG+  N A L S++ AC   +  + FGL +H   LK G ++   + N+L+ MY KF   E
Sbjct: 214 SGVPVNVASLVSILPACG-TERDEGFGLCVHGLVLKFGLNSVVNLGNALVDMYGKFGDLE 272

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
           S+  +F+ M  ++ +SWNS I CF   GF+   LEMFR M        +  L+ ++    
Sbjct: 273 SSMHVFNGMQEKNEVSWNSAIGCFAHAGFHEDVLEMFRLMSEHDVTPGSVTLSSLLPALV 332

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
            +G   LG+++H   I   + E  +F++  L+D+Y+K      A  +FE + +RN VSW 
Sbjct: 333 DLGYFHLGKELHGYSIRR-AVESDIFIANTLMDMYAKFGCSEKASAIFENIEVRNVVSWN 391

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
           AMI+    +        L   MQ+ G  P   TL  +L AC+ +  ++ GK IH ++   
Sbjct: 392 AMIANLTQNGAEAEAFRLVIEMQKNGECPNSFTLVNLLPACSRVASVKMGKQIHAWSIRR 451

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
               D  +S AL+ +Y +C + L+ AR IF+R++ KD V ++++I GYSQS    E++ L
Sbjct: 452 SLMSDLFVSNALIDVYAKCGQ-LNLARYIFDRSE-KDGVSYNTLIVGYSQSQCCFESLHL 509

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
           F +MRL  IE ++V+ +  LS+C+  S    G  +H  ++K  L+    + N+L+++Y+K
Sbjct: 510 FQQMRLAGIEHDAVSFMGCLSACSNLSAFKQGKEIHGVLVKRLLDSHPFLANSLLDVYTK 569

Query: 381 CGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
            G + ++ +IFN +  +D  SW T+I GYG HG  + A +LF  M++ G+E D ++ +A+
Sbjct: 570 GGMLDTASKIFNRITQKDVASWNTMILGYGMHGQIDVAFELFDLMKDDGIEYDHVSYIAV 629

Query: 441 LSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKP 500
           LS C+H GLV   +  F+  M  + I     HYAC VDLLG++G++ ++ +++  MP + 
Sbjct: 630 LSVCSHGGLVDRGKKYFSQ-MIAQNIKPQQMHYACMVDLLGRAGQLSESAEIIRNMPFRA 688

Query: 501 STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWR 560
           ++ +  +L+ +CRIHG +E+A + A  L E +PEN+  YTLL  + SESG W  A  V +
Sbjct: 689 NSDVWGALLGSCRIHGDIELARLAAEHLFELKPENSGYYTLLRNMYSESGMWNEANGVKK 748

Query: 561 VMRAKGLSKSYGFSRIEN 578
           +M+++ + K+  +S +++
Sbjct: 749 LMKSRKVQKNPAYSWVQS 766



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 115/443 (25%), Positives = 198/443 (44%), Gaps = 19/443 (4%)

Query: 31  PSVIKACAYAQTHQHFGLQLHC-----------TALKSGS-DADPVISNSLISMYAKFSK 78
           P    A   A  H+H  L+LHC            +L SG+  A   ++ +L+  YA    
Sbjct: 4   PGPAAAFTAASLHEHV-LRLHCGGSLLLRRAHAASLVSGALTASFPLAGALLLSYAALPD 62

Query: 79  PESAYQLFDEMPYR--DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
             SA+ +    P+R      WNS+            +L ++  M   G           +
Sbjct: 63  IPSAHLILRHHPFRLRSAFLWNSLSRALASAALPCEALRVYNRMVRSGVRPDDRTFPFAL 122

Query: 137 SLCSQIGELE---LGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI 193
              + + + E    G ++HA  +  G     VF    L+  Y+ C     A RVF++M  
Sbjct: 123 HAAAAVAQAEHPAKGAELHAAALRRGLLLADVFAGNTLVTFYAVCGRAADARRVFDEMPA 182

Query: 194 RNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAI 253
           R+ VSW +++S  + +   +        M R GV     +L  +L AC   RD   G  +
Sbjct: 183 RDVVSWNSLVSALLTNGMLEDAKRAVVGMMRSGVPVNVASLVSILPACGTERDEGFGLCV 242

Query: 254 HGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGD 313
           HG     G +   +L  AL+ MY +  + L  +  +F   + K+ V W+S I  ++ +G 
Sbjct: 243 HGLVLKFGLNSVVNLGNALVDMYGKFGD-LESSMHVFNGMQEKNEVSWNSAIGCFAHAGF 301

Query: 314 LSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNA 373
             + +++F  M    + P SVTL ++L +     +   G  +H Y ++  +  D+ I N 
Sbjct: 302 HEDVLEMFRLMSEHDVTPGSVTLSSLLPALVDLGYFHLGKELHGYSIRRAVESDIFIANT 361

Query: 374 LMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPD 433
           LM+MY+K G    +  IF  +  R+ VSW  +I+    +G   EA +L +EMQ++G  P+
Sbjct: 362 LMDMYAKFGCSEKASAIFENIEVRNVVSWNAMIANLTQNGAEAEAFRLVIEMQKNGECPN 421

Query: 434 AITVLAILSACNHAGLVKEAETL 456
           + T++ +L AC+    VK  + +
Sbjct: 422 SFTLVNLLPACSRVASVKMGKQI 444



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 101/214 (47%), Gaps = 13/214 (6%)

Query: 294 KVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSH-- 351
           +++   +W+S+ R  + +    EA+++++RM    + P+  T    L +    +   H  
Sbjct: 76  RLRSAFLWNSLSRALASAALPCEALRVYNRMVRSGVRPDDRTFPFALHAAAAVAQAEHPA 135

Query: 352 -GLGVHCYIMKAGLNF-DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGY 409
            G  +H   ++ GL   DV  GN L+  Y+ CG    + ++F+EM ARD VSW +L+S  
Sbjct: 136 KGAELHAAALRRGLLLADVFAGNTLVTFYAVCGRAADARRVFDEMPARDVVSWNSLVSAL 195

Query: 410 GFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA 469
             +G  E+A +  + M  SGV  +  ++++IL AC       E +  F   +    +   
Sbjct: 196 LTNGMLEDAKRAVVGMMRSGVPVNVASLVSILPACG-----TERDEGFGLCVHGLVLKFG 250

Query: 470 IEHYA----CYVDLLGKSGKIEDACKVVSTMPMK 499
           +          VD+ GK G +E +  V + M  K
Sbjct: 251 LNSVVNLGNALVDMYGKFGDLESSMHVFNGMQEK 284


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 203/597 (34%), Positives = 328/597 (54%), Gaps = 29/597 (4%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQ--HFGLQLHCTALKSGSDADPV 64
           +EQ L  ++  +    +  ++  L SV  AC+          G QLH  +L+ G D    
Sbjct: 175 WEQALEAFRA-MQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVG-DQKTF 232

Query: 65  ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG 124
            +N+L++MYAK  + + +  LF+    RD +SWN++I+ F+Q+  +  +L  FR M L G
Sbjct: 233 TNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEG 292

Query: 125 FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
             L    +A ++  CS +  L++G++IHA V+ +     + FV +AL+D+Y  C      
Sbjct: 293 VELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESG 352

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR-EGVKPTRVTLTIVLLACAE 243
            RVF+ ++ R    W AMISG   +   +  + LF  M +  G+ P   T+  V+ AC  
Sbjct: 353 RRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVH 412

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
                N ++IHGYA   GF  D ++  ALM MY    + +  +  IF+  +V+D V W++
Sbjct: 413 CEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGK-MDISETIFDSMEVRDRVSWNT 471

Query: 304 IIRGYSQSGDLSEAMKLFSRM-RLERI----------------EPNSVTLLAILSSCTRQ 346
           +I GY  SG  S A+ L   M R+E                  +PN++TL+ +L  C   
Sbjct: 472 MITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAAL 531

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
           + ++ G  +H Y ++  L  D+++G+AL++MY+KCG +  S ++FNEM  ++ ++W  LI
Sbjct: 532 AAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLI 591

Query: 407 SGYGFHGYGEEALQLFLEM-QESG----VEPDAITVLAILSACNHAGLVKEAETLFNNVM 461
              G HG GEEAL+LF  M  E+G     +P+ +T + + +AC+H+GL+ E   LF  + 
Sbjct: 592 MACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMK 651

Query: 462 KEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK-PSTRILSSLVSACRIHGRLEV 520
            +  +    +HYAC VDLLG++G++E+A ++V+TMP +       SSL+ ACRIH  +E+
Sbjct: 652 HDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVEL 711

Query: 521 AEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            E+ A  L+  EP  A++Y LLS + S +G W  A EV + MR  G+ K  G S IE
Sbjct: 712 GEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIE 768



 Score =  233 bits (593), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 167/564 (29%), Positives = 276/564 (48%), Gaps = 37/564 (6%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPV-ISNSLISMYAK 75
           E+  SG   +    P+V+KA +  Q  +  G Q+H  A+K G  +  V ++N+L++MY K
Sbjct: 82  EMTVSGARPDNFAFPAVLKAVSGLQDLKT-GEQIHAAAVKFGYGSSSVTVANTLVNMYGK 140

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
                   ++FD +  RD +SWNS I    +   + ++LE FR M +    L +  L  +
Sbjct: 141 CGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSSFTLVSV 200

Query: 136 ISLCSQIG---ELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV 192
              CS +G    L LG+Q+H   +  G  +   F + AL+ +Y+K      +  +FE  V
Sbjct: 201 ALACSNLGVMHGLRLGKQLHGYSLRVG--DQKTFTNNALMAMYAKLGRVDDSKALFESFV 258

Query: 193 IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKA 252
            R+ VSW  MIS    S  +   +  FR M  EGV+   VT+  VL AC+ L  L  GK 
Sbjct: 259 DRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKE 318

Query: 253 IHGYAYCCGFDFDHH-LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQS 311
           IH Y        ++  + +AL+ MYC C + +   R +F+    + + +W+++I GY+++
Sbjct: 319 IHAYVLRNNDLIENSFVGSALVDMYCNCRQ-VESGRRVFDHILGRRIELWNAMISGYARN 377

Query: 312 GDLSEAMKLFSRM-RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSI 370
           G   +A+ LF  M ++  + PN+ T+ +++ +C      S+   +H Y +K G   D  +
Sbjct: 378 GLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYV 437

Query: 371 GNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE--- 427
            NALM+MYS+ G +  S  IF+ M  RD VSW T+I+GY   G    AL L  EMQ    
Sbjct: 438 QNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMEN 497

Query: 428 --------------SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY 473
                            +P+AIT++ +L  C     + + + +    ++   +A  I   
Sbjct: 498 TKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAKGKEIHAYAIR-NMLASDITVG 556

Query: 474 ACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLI---- 529
           +  VD+  K G +  + +V + MP K +    + L+ AC +HG+ E A  L   ++    
Sbjct: 557 SALVDMYAKCGCLNLSRRVFNEMPNK-NVITWNVLIMACGMHGKGEEALELFKNMVAEAG 615

Query: 530 ---EAEPENAANYTLLSMVCSESG 550
              EA+P N   +  +   CS SG
Sbjct: 616 RGGEAKP-NEVTFITVFAACSHSG 638



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 125/450 (27%), Positives = 232/450 (51%), Gaps = 13/450 (2%)

Query: 90  PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGR 149
           P R T SW   +   T++  +  ++  + EM + G          ++   S + +L+ G 
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
           QIHA  +  G    SV V+  L+++Y KC       +VF+++  R++VSW + I+     
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRF 172

Query: 210 QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL---RDLRNGKAIHGYAYCCGFDFDH 266
           + ++  ++ FRAMQ E ++ +  TL  V LAC+ L     LR GK +HGY+   G D   
Sbjct: 173 EKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVG-DQKT 231

Query: 267 HLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRL 326
             + ALM MY +    +  ++ +FE    +D+V W+++I  +SQS   SEA+  F  M L
Sbjct: 232 FTNNALMAMYAKLGR-VDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVL 290

Query: 327 ERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS-IGNALMNMYSKCGSIT 385
           E +E + VT+ ++L +C+    L  G  +H Y+++     + S +G+AL++MY  C  + 
Sbjct: 291 EGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVE 350

Query: 386 SSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM-QESGVEPDAITVLAILSAC 444
           S  ++F+ +  R    W  +ISGY  +G  E+AL LF+EM + +G+ P+  T+ +++ AC
Sbjct: 351 SGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPAC 410

Query: 445 NHAGLVKEAETLFNNVMKEKKIALAIEHYA--CYVDLLGKSGKIEDACKVVSTMPMKPST 502
            H       E++    +   K+    + Y     +D+  + GK++ +  +  +M ++   
Sbjct: 411 VHCEAFSNKESIHGYAV---KLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRV 467

Query: 503 RILSSLVSACRIHGRLEVAEMLAHQLIEAE 532
              +++++   + GR   A +L H++   E
Sbjct: 468 S-WNTMITGYVLSGRYSNALVLLHEMQRME 496


>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 603

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 197/569 (34%), Positives = 316/569 (55%), Gaps = 19/569 (3%)

Query: 23  LYSNTAILPSVIKACAYAQT---HQHF--GLQLHCTALKSGSDADPVISNSLISMYAKFS 77
           + S   +L +V K  A+ Q+   HQ+   G QLH   +  G    P    SLI+MY+K  
Sbjct: 1   MLSAIQMLNNVTKCVAFLQSCADHQNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCG 60

Query: 78  KPESAYQLF-DEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
           +   A  +F D    R+  ++N+II+ F  NG   +  + +++M L G +        ++
Sbjct: 61  QMGEAILVFYDPCHERNVFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVV 120

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
             C ++ E+   ++IH  ++  G  EL VFV +AL++ Y K      A +VF ++ IR+ 
Sbjct: 121 RTCCEVMEV---KKIHGCLLKMG-LELDVFVGSALVNTYLKNGSMEDAQKVFGELSIRDV 176

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           V W AMI+G       D  +++FR M  +GV P+R T+T +L   A   DL NGK +HG 
Sbjct: 177 VLWNAMINGYAKIGCLDEALEVFRRMHVKGVAPSRFTITGILSVFASRGDLDNGKTVHGI 236

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
               G+D    +S AL+ MY +C   +  A IIFE    KD+  W+SII  + Q GD   
Sbjct: 237 VMKMGYDSGVSVSNALIDMYGKCKH-IGDALIIFEMINEKDIFSWNSIISVHEQCGDHDG 295

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD--------V 368
            ++LF +M    I P+ VT+  +L +C+  + L HG  +H Y++  GL  D        +
Sbjct: 296 TLRLFDKMLGSGILPDLVTITTVLPACSHLAALMHGREIHGYMIINGLGKDDENGAVDNL 355

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
            + NA+M+MY+KCGS+ ++ +IF+ M+ +D  SW  +I GYG HGY  EAL +F +M E+
Sbjct: 356 LVSNAVMDMYAKCGSMNNALKIFDSMSKKDVASWNIMIMGYGMHGYALEALGMFSQMCEA 415

Query: 429 GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIED 488
             +P+ +T++ +LSACNHAG V         +     +   IEHY C +D+LG++G +ED
Sbjct: 416 EFKPNEVTLVGVLSACNHAGFVSHGRLFLAQMESTFGVIPTIEHYTCVIDMLGRAGHLED 475

Query: 489 ACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSE 548
           A ++V  MP++ +  +  +L+ ACR+HG  E+AE+ A Q+++ EPE+  +Y L+S V   
Sbjct: 476 AYEIVQKMPIQANPVVWRALLGACRLHGNAELAEIAARQVLQLEPEHCGSYVLMSNVYGV 535

Query: 549 SGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            G +    EV + M+ + + K+ G S IE
Sbjct: 536 IGRYEEVLEVRKTMKEQNVKKTPGCSWIE 564


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 195/566 (34%), Positives = 309/566 (54%), Gaps = 18/566 (3%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           N    P  +KAC+    H H G  +H  A+ +G  AD  +S +L+ MY K +    A  +
Sbjct: 9   NNYTFPFALKACSALADH-HCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHI 67

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK--AELLAGIISLCSQIG 143
           F  MP RD ++WN+++  +  +G Y  ++     M +    L+  A  L  ++ L +Q G
Sbjct: 68  FATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQG 127

Query: 144 ELELGRQIHALVI---------VDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
            L  G  +HA  I                 V + TALLD+Y+KC   L A RVF+ M  R
Sbjct: 128 ALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPAR 187

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV---KPTRVTLTIVLLACAELRDLRNGK 251
           NEV+W+A+I G +          LF+AM  +G+    PT  ++   L ACA L  LR G+
Sbjct: 188 NEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT--SIASALRACASLDHLRMGE 245

Query: 252 AIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQS 311
            +H      G   D     +L+ MY +    +  A  +F+   VKD V +S+++ GY Q+
Sbjct: 246 QLHALLAKSGVHADLTAGNSLLSMYAK-AGLIDQAIALFDEMAVKDTVSYSALVSGYVQN 304

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
           G   EA  +F +M+   +EP++ T+++++ +C+  + L HG   H  ++  GL  + SI 
Sbjct: 305 GRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSIC 364

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
           NAL++MY+KCG I  S Q+FN M +RD VSW T+I+GYG HG G+EA  LFLEM   G  
Sbjct: 365 NALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFP 424

Query: 432 PDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACK 491
           PD +T + +LSAC+H+GLV E +  F+ +     +   +EHY C VDLL + G +++A +
Sbjct: 425 PDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYE 484

Query: 492 VVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGN 551
            + +MP++   R+  +L+ ACR++  +++ + ++  + E  PE   N+ LLS + S +G 
Sbjct: 485 FIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGR 544

Query: 552 WLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +  A EV  + + +G  KS G S IE
Sbjct: 545 FDEAAEVRIIQKVQGFKKSPGCSWIE 570



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 169/344 (49%), Gaps = 23/344 (6%)

Query: 222 MQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTE 281
           M R  V P   T    L AC+ L D   G+AIH +A   G   D  +S AL+ MY +C  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCA- 59

Query: 282 ALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK--LFSRMRLERIEPNSVTLLAI 339
            L  A  IF     +D+V W++++ GY+  G    A+   L  +M++ R+ PN+ TL+A+
Sbjct: 60  CLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVAL 119

Query: 340 LSSCTRQSFLSHGLGVHCYIMKAGLNFD----------VSIGNALMNMYSKCGSITSSHQ 389
           L    +Q  L+ G  VH Y ++A L+ +          V +G AL++MY+KCGS+  + +
Sbjct: 120 LPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARR 179

Query: 390 IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG---VEPDAITVLAILSACNH 446
           +F+ M AR+ V+W+ LI G+       +A  LF  M   G   + P +I   + L AC  
Sbjct: 180 VFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACAS 237

Query: 447 AGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILS 506
              ++  E L + ++ +  +   +      + +  K+G I+ A  +   M +K  T   S
Sbjct: 238 LDHLRMGEQL-HALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVK-DTVSYS 295

Query: 507 SLVSACRIHGRLEVAEML--AHQLIEAEPENAANYTLLSMVCSE 548
           +LVS    +GR E A ++    Q    EP+ A   +L+   CS 
Sbjct: 296 ALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIP-ACSH 338


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  344 bits (882), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 190/551 (34%), Positives = 312/551 (56%), Gaps = 6/551 (1%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPY 91
           S++K CA A+     G  +H      G   + + + +L +MYAK  +P  A ++FD MP 
Sbjct: 230 SLLKLCA-ARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRMPA 288

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMYL-CGFVLKAELLAGIISLCSQIGELELGRQ 150
           RD ++WN+++  + +NG    ++ M   M    G    A  L  ++  C+    L   R+
Sbjct: 289 RDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGACRE 348

Query: 151 IHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQ 210
           +HA   V G F+  V VSTA+LD+Y KC     A +VF+ M  RN VSW AMI G  ++ 
Sbjct: 349 VHAFA-VRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENG 407

Query: 211 NYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSA 270
           +    + LF+ M  EGV  T V++   L AC EL  L  G+ +H      G + + ++  
Sbjct: 408 DATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESNVNVMN 467

Query: 271 ALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE 330
           AL+ MYC+C      A++ F+    K  V W+++I G +Q+G   +A++LFSRM+LE ++
Sbjct: 468 ALITMYCKCKRTDLAAQV-FDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVK 526

Query: 331 PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQI 390
           P+S TL++I+ +    S       +H Y ++  L+ DV +  AL++MY+KCG ++ +  +
Sbjct: 527 PDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSL 586

Query: 391 FNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLV 450
           FN    R  ++W  +I GYG HG G+ A++LF EM+ SG  P+  T L++LSAC+HAGLV
Sbjct: 587 FNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSACSHAGLV 646

Query: 451 KEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVS 510
            E +  F+++ ++  +   +EHY   VDLLG++GK+ +A   +  MPM+P   +  +++ 
Sbjct: 647 DEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISVYGAMLG 706

Query: 511 ACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKS 570
           AC++H  +E+AE  A ++ E EPE    + LL+ + + +  W     V   M  KGL K+
Sbjct: 707 ACKLHKNVELAEESAQRIFELEPEEGVYHVLLANIYANASLWKDVARVRTAMEKKGLQKT 766

Query: 571 YGFS--RIENE 579
            G+S  +++NE
Sbjct: 767 PGWSIVQLKNE 777



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 98/320 (30%), Positives = 159/320 (49%), Gaps = 35/320 (10%)

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
           G  P   T T +L  CA   DL  G+A+H      G   +   + AL +MY +C      
Sbjct: 220 GSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRP-GD 278

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE-PNSVTLLAILSSCT 344
           AR +F+R   +D V W++++ GY+++G    A+ +  RM+ E  E P++VTL+++L +C 
Sbjct: 279 ARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACA 338

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
               L     VH + ++ G +  V++  A++++Y KCG++ S+ ++F+ M  R+ VSW  
Sbjct: 339 DAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNA 398

Query: 405 LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFN------ 458
           +I GY  +G   EAL LF  M   GV+   ++VLA L AC   G + E   +        
Sbjct: 399 MIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIG 458

Query: 459 -----NVM--------KEKKIALAIE-----HYACYVD----LLG--KSGKIEDACKVVS 494
                NVM        K K+  LA +      Y   V     +LG  ++G  EDA ++ S
Sbjct: 459 LESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFS 518

Query: 495 TMPM---KPSTRILSSLVSA 511
            M +   KP +  L S++ A
Sbjct: 519 RMQLENVKPDSFTLVSIIPA 538



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 99/199 (49%), Gaps = 13/199 (6%)

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIE-PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           +R  +   DL  A+  F+ M       P   T  ++L  C  ++ L+ G  VH  +   G
Sbjct: 196 LRAAASRSDLRGALAAFAAMSPASGSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARG 255

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
           L+ +     AL NMY+KC     + ++F+ M ARD V+W  L++GY  +G  E A+ + +
Sbjct: 256 LSPEALAATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVV 315

Query: 424 EMQ-ESGVEPDAITVLAILSACNHA---GLVKE--AETLFNNVMKEKKIALAIEHYACYV 477
            MQ E G  PDA+T++++L AC  A   G  +E  A  +     ++  ++ AI      +
Sbjct: 316 RMQEEDGERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAI------L 369

Query: 478 DLLGKSGKIEDACKVVSTM 496
           D+  K G ++ A KV   M
Sbjct: 370 DVYCKCGAVDSARKVFDGM 388


>gi|356557931|ref|XP_003547263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Glycine max]
          Length = 764

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 175/528 (33%), Positives = 313/528 (59%), Gaps = 2/528 (0%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           LH +A+  G  +D  +SNS++SMY K    E + +LFD M  RD +SWNS+++ + Q G+
Sbjct: 189 LHGSAILYGFMSDINLSNSMLSMYGKCRNIEYSRKLFDYMDQRDLVSWNSLVSAYAQIGY 248

Query: 110 YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVST 169
               L + + M + GF    +    ++S+ +  GEL+LGR +H   I+   F+L   V T
Sbjct: 249 ICEVLLLLKTMRIQGFEPDPQTFGSVLSVAASRGELKLGRCLHG-QILRTCFDLDAHVET 307

Query: 170 ALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKP 229
           +L+ +Y K  +  IA R+FE+ + ++ V WTAMISG + + + D  + +FR M + GVK 
Sbjct: 308 SLIVMYLKGGNIDIAFRMFERSLDKDVVLWTAMISGLVQNGSADKALAVFRQMLKFGVKS 367

Query: 230 TRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARII 289
           +  T+  V+ ACA+L     G ++HGY +      D     +L+ M+ +C   L  + I+
Sbjct: 368 STATMASVITACAQLGSYNLGTSVHGYMFRHELPMDIATQNSLVTMHAKCGH-LDQSSIV 426

Query: 290 FERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFL 349
           F++   +++V W+++I GY+Q+G + +A+ LF+ MR +   P+S+T++++L  C     L
Sbjct: 427 FDKMNKRNLVSWNAMITGYAQNGYVCKALFLFNEMRSDHQTPDSITIVSLLQGCASTGQL 486

Query: 350 SHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGY 409
             G  +H ++++ GL   + +  +L++MY KCG +  + + FN+M + D VSW+ +I GY
Sbjct: 487 HLGKWIHSFVIRNGLRPCILVDTSLVDMYCKCGDLDIAQRCFNQMPSHDLVSWSAIIVGY 546

Query: 410 GFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA 469
           G+HG GE AL+ + +  ESG++P+ +  L++LS+C+H GLV++   ++ ++ ++  IA  
Sbjct: 547 GYHGKGETALRFYSKFLESGMKPNHVIFLSVLSSCSHNGLVEQGLNIYESMTRDFGIAPN 606

Query: 470 IEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLI 529
           +EH+AC VDLL ++G++E+A  +       P   +L  ++ ACR +G  E+ + +A+ ++
Sbjct: 607 LEHHACVVDLLSRAGRVEEAYNLYKKKFSDPVLDVLGIILDACRANGNNELGDTIANDIL 666

Query: 530 EAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
             +P +A N+  L+   +    W    E W  MR+ GL K  G+S I+
Sbjct: 667 MLKPMDAGNFVQLAHCYASINKWEEVGEAWTHMRSLGLKKIPGWSFID 714



 Score =  232 bits (591), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 160/553 (28%), Positives = 284/553 (51%), Gaps = 18/553 (3%)

Query: 3   SKHFYEQTLHLYKQELH---PSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGS 59
           S+  + Q L  Y   L    PS  Y+     PS++KAC+        GL LH   L SG 
Sbjct: 46  SQGAHRQVLATYASMLKTHVPSDAYT----FPSLLKACSSLNLFS-LGLSLHQRILVSGL 100

Query: 60  DADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFRE 119
             D  I++SLI+ YAKF   + A ++FD MP R+ + W SII C+++ G    +  +F E
Sbjct: 101 SLDAYIASSLINFYAKFGFADVARKVFDFMPERNVVPWTSIIGCYSRTGRVPEAFSLFDE 160

Query: 120 MYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH 179
           M   G    +     ++SL   + EL   + +H   I+ G F   + +S ++L +Y KC 
Sbjct: 161 MRRQGIQPSS---VTMLSLLFGVSELAHVQCLHGSAILYG-FMSDINLSNSMLSMYGKCR 216

Query: 180 HWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLL 239
           +   + ++F+ M  R+ VSW +++S           + L + M+ +G +P   T   VL 
Sbjct: 217 NIEYSRKLFDYMDQRDLVSWNSLVSAYAQIGYICEVLLLLKTMRIQGFEPDPQTFGSVLS 276

Query: 240 ACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVV 299
             A   +L+ G+ +HG      FD D H+  +L+ MY +    +  A  +FER+  KDVV
Sbjct: 277 VAASRGELKLGRCLHGQILRTCFDLDAHVETSLIVMYLKGGN-IDIAFRMFERSLDKDVV 335

Query: 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
           +W+++I G  Q+G   +A+ +F +M    ++ ++ T+ +++++C +    + G  VH Y+
Sbjct: 336 LWTAMISGLVQNGSADKALAVFRQMLKFGVKSSTATMASVITACAQLGSYNLGTSVHGYM 395

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEAL 419
            +  L  D++  N+L+ M++KCG +  S  +F++M  R+ VSW  +I+GY  +GY  +AL
Sbjct: 396 FRHELPMDIATQNSLVTMHAKCGHLDQSSIVFDKMNKRNLVSWNAMITGYAQNGYVCKAL 455

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479
            LF EM+     PD+IT++++L  C   G +   + + + V++   +   I      VD+
Sbjct: 456 FLFNEMRSDHQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRN-GLRPCILVDTSLVDM 514

Query: 480 LGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAA 537
             K G ++ A +  + MP        S+++     HG+ E A     + +E+  +P +  
Sbjct: 515 YCKCGDLDIAQRCFNQMPSHDLVS-WSAIIVGYGYHGKGETALRFYSKFLESGMKPNHVI 573

Query: 538 NYTLLSMVCSESG 550
             ++LS  CS +G
Sbjct: 574 FLSVLS-SCSHNG 585



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 107/401 (26%), Positives = 202/401 (50%), Gaps = 6/401 (1%)

Query: 96  SWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALV 155
           S+N+IIN  +  G + + L  +  M        A     ++  CS +    LG  +H  +
Sbjct: 36  SFNAIINHHSSQGAHRQVLATYASMLKTHVPSDAYTFPSLLKACSSLNLFSLGLSLHQRI 95

Query: 156 IVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTG 215
           +V G   L  +++++L++ Y+K     +A +VF+ M  RN V WT++I     +      
Sbjct: 96  LVSG-LSLDAYIASSLINFYAKFGFADVARKVFDFMPERNVVPWTSIIGCYSRTGRVPEA 154

Query: 216 IDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHM 275
             LF  M+R+G++P+ VT+  +L   +EL  +   + +HG A   GF  D +LS +++ M
Sbjct: 155 FSLFDEMRRQGIQPSSVTMLSLLFGVSELAHV---QCLHGSAILYGFMSDINLSNSMLSM 211

Query: 276 YCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVT 335
           Y +C   +  +R +F+    +D+V W+S++  Y+Q G + E + L   MR++  EP+  T
Sbjct: 212 YGKCRN-IEYSRKLFDYMDQRDLVSWNSLVSAYAQIGYICEVLLLLKTMRIQGFEPDPQT 270

Query: 336 LLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA 395
             ++LS    +  L  G  +H  I++   + D  +  +L+ MY K G+I  + ++F    
Sbjct: 271 FGSVLSVAASRGELKLGRCLHGQILRTCFDLDAHVETSLIVMYLKGGNIDIAFRMFERSL 330

Query: 396 ARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAET 455
            +D V WT +ISG   +G  ++AL +F +M + GV+    T+ ++++AC   G      +
Sbjct: 331 DKDVVLWTAMISGLVQNGSADKALAVFRQMLKFGVKSSTATMASVITACAQLGSYNLGTS 390

Query: 456 LFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
           + +  M   ++ + I      V +  K G ++ +  V   M
Sbjct: 391 V-HGYMFRHELPMDIATQNSLVTMHAKCGHLDQSSIVFDKM 430



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 99/373 (26%), Positives = 183/373 (49%), Gaps = 4/373 (1%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G   +     SV+   A ++     G  LH   L++  D D  +  SLI MY K    + 
Sbjct: 263 GFEPDPQTFGSVLSVAA-SRGELKLGRCLHGQILRTCFDLDAHVETSLIVMYLKGGNIDI 321

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A+++F+    +D + W ++I+   QNG   ++L +FR+M   G       +A +I+ C+Q
Sbjct: 322 AFRMFERSLDKDVVLWTAMISGLVQNGSADKALAVFRQMLKFGVKSSTATMASVITACAQ 381

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
           +G   LG  +H  +       + +    +L+ +++KC H   +  VF++M  RN VSW A
Sbjct: 382 LGSYNLGTSVHGYMFRH-ELPMDIATQNSLVTMHAKCGHLDQSSIVFDKMNKRNLVSWNA 440

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           MI+G   +      + LF  M+ +   P  +T+  +L  CA    L  GK IH +    G
Sbjct: 441 MITGYAQNGYVCKALFLFNEMRSDHQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRNG 500

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
                 +  +L+ MYC+C + L  A+  F +    D+V WS+II GY   G    A++ +
Sbjct: 501 LRPCILVDTSLVDMYCKCGD-LDIAQRCFNQMPSHDLVSWSAIIVGYGYHGKGETALRFY 559

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA-GLNFDVSIGNALMNMYSK 380
           S+     ++PN V  L++LSSC+    +  GL ++  + +  G+  ++     ++++ S+
Sbjct: 560 SKFLESGMKPNHVIFLSVLSSCSHNGLVEQGLNIYESMTRDFGIAPNLEHHACVVDLLSR 619

Query: 381 CGSITSSHQIFNE 393
            G +  ++ ++ +
Sbjct: 620 AGRVEEAYNLYKK 632



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 127/258 (49%), Gaps = 11/258 (4%)

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           +++II  +S  G   + +  ++ M    +  ++ T  ++L +C+  +  S GL +H  I+
Sbjct: 37  FNAIINHHSSQGAHRQVLATYASMLKTHVPSDAYTFPSLLKACSSLNLFSLGLSLHQRIL 96

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
            +GL+ D  I ++L+N Y+K G    + ++F+ M  R+ V WT++I  Y   G   EA  
Sbjct: 97  VSGLSLDAYIASSLINFYAKFGFADVARKVFDFMPERNVVPWTSIIGCYSRTGRVPEAFS 156

Query: 421 LFLEMQESGVEPDAITVLAILSACNHAGLVK--EAETLFNNVMKEKKIALAIEHYACYVD 478
           LF EM+  G++P ++T+L++L   +    V+      +    M +  ++ ++      + 
Sbjct: 157 LFDEMRRQGIQPSSVTMLSLLFGVSELAHVQCLHGSAILYGFMSDINLSNSM------LS 210

Query: 479 LLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRL-EVAEMLAHQLIEA-EPENA 536
           + GK   IE + K+   M  +      +SLVSA    G + EV  +L    I+  EP+  
Sbjct: 211 MYGKCRNIEYSRKLFDYMDQRDLVS-WNSLVSAYAQIGYICEVLLLLKTMRIQGFEPDPQ 269

Query: 537 ANYTLLSMVCSESGNWLG 554
              ++LS+  S     LG
Sbjct: 270 TFGSVLSVAASRGELKLG 287


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 196/592 (33%), Positives = 316/592 (53%), Gaps = 65/592 (10%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYR---------------- 92
           ++HC  +K+  + +  + N+L+S YAKF +   A ++FD+MP R                
Sbjct: 30  KIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSWNTLLSSYSKLA 89

Query: 93  ---------------DTISWNSIINCFTQNGFYVRSLEMFREMYLCG-FVLKAELLAGII 136
                          D +SWNS+I+ +   GF ++S++ +  M   G F L    L+ ++
Sbjct: 90  CLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTML 149

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN- 195
            L S+ G + LG Q+H  V+  G F+  VFV + L+D+YSK      A + F++M  +N 
Sbjct: 150 ILASKQGCVHLGLQVHGHVVKFG-FQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNV 208

Query: 196 ------------------------------EVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
                                          +SWTAMI+G   +      IDLFR M+ E
Sbjct: 209 VMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLE 268

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
            ++  + T   VL AC  +  L+ GK +H Y     +  +  + +AL+ MYC+C +++  
Sbjct: 269 NLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKC-KSIKS 327

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           A  +F +   K+VV W++++ GY Q+G   EA+K+F  M+   IEP+  TL +++SSC  
Sbjct: 328 AETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCAN 387

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
            + L  G   HC  + +GL   +++ NAL+ +Y KCGSI  SH++F+EM+  D VSWT L
Sbjct: 388 LASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTAL 447

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           +SGY   G   E L+LF  M   G +PD +T + +LSAC+ AGLV++   +F +++KE +
Sbjct: 448 VSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHR 507

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
           I    +HY C +DL  ++G++E+A K ++ MP  P     +SL+S+CR H  +E+ +  A
Sbjct: 508 IIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLSSCRFHRNMEIGKWAA 567

Query: 526 HQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
             L++ EP N A+Y LLS + +  G W     + + MR KGL K  G S I+
Sbjct: 568 ESLLKLEPHNTASYILLSSIYAAKGKWEEVANLRKGMRDKGLRKEPGCSWIK 619



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 123/442 (27%), Positives = 212/442 (47%), Gaps = 36/442 (8%)

Query: 4   KHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADP 63
           + F  Q++  Y   L+ +G ++   I  S +   A  Q   H GLQ+H   +K G  +  
Sbjct: 119 RGFLLQSVKAYNLMLY-NGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYV 177

Query: 64  VISNSLISMYAKFSKPESAYQLFDEMP-------------------------------YR 92
            + + L+ MY+K      A Q FDEMP                                +
Sbjct: 178 FVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEK 237

Query: 93  DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIH 152
           D+ISW ++I  FTQNG    ++++FREM L    +       +++ C  +  L+ G+Q+H
Sbjct: 238 DSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVH 297

Query: 153 ALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNY 212
           A  I+   ++ ++FV +AL+D+Y KC     A  VF +M  +N VSWTAM+ G   +   
Sbjct: 298 AY-IIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYS 356

Query: 213 DTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAAL 272
           +  + +F  MQ  G++P   TL  V+ +CA L  L  G   H  A   G      +S AL
Sbjct: 357 EEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNAL 416

Query: 273 MHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPN 332
           + +Y +C       R+  E + V D V W++++ GY+Q G  +E ++LF  M     +P+
Sbjct: 417 VTLYGKCGSIEDSHRLFSEMSYV-DEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPD 475

Query: 333 SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG-NALMNMYSKCGSITSSHQIF 391
            VT + +LS+C+R   +  G  +   ++K      +      +++++S+ G +  + +  
Sbjct: 476 KVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFI 535

Query: 392 NEMA-ARDFVSWTTLISGYGFH 412
           N+M  + D + W +L+S   FH
Sbjct: 536 NKMPFSPDAIGWASLLSSCRFH 557



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 104/207 (50%), Gaps = 16/207 (7%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           ++  +G+  +   L SVI +CA   + +  G Q HC AL SG  +   +SN+L+++Y K 
Sbjct: 365 DMQNNGIEPDDFTLGSVISSCANLASLEE-GAQFHCRALVSGLISFITVSNALVTLYGKC 423

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
              E +++LF EM Y D +SW ++++ + Q G    +L +F  M   GF        G++
Sbjct: 424 GSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVL 483

Query: 137 SLCSQIGELELGRQI-------HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
           S CS+ G ++ G QI       H ++ ++  +       T ++DL+S+      A +   
Sbjct: 484 SACSRAGLVQKGNQIFESMIKEHRIIPIEDHY-------TCMIDLFSRAGRLEEARKFIN 536

Query: 190 QMVIR-NEVSWTAMISGCIDSQNYDTG 215
           +M    + + W +++S C   +N + G
Sbjct: 537 KMPFSPDAIGWASLLSSCRFHRNMEIG 563


>gi|224090525|ref|XP_002309013.1| predicted protein [Populus trichocarpa]
 gi|222854989|gb|EEE92536.1| predicted protein [Populus trichocarpa]
          Length = 583

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 182/550 (33%), Positives = 318/550 (57%), Gaps = 7/550 (1%)

Query: 29  ILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDE 88
           ++ S+I  C+  +  +  GL LH  A+K+ + +D ++SN ++++YAK  K   A Q+FDE
Sbjct: 5   LVGSLIHQCSKTKALRQ-GLPLHAIAIKTATRSDVIVSNHILNLYAKCRKLREARQVFDE 63

Query: 89  MPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELG 148
           M  R+ +SW+++I+ + Q G  + +L +F ++ +   V    + A +IS C+ +  L  G
Sbjct: 64  MSERNLVSWSAMISGYEQIGEPISALGLFSKLNI---VPNEYVYASVISACASLKGLVQG 120

Query: 149 RQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCID 208
           +QIH   +  G   +S FVS AL+ +Y KC     AL  + + +  N V++ A+I+G ++
Sbjct: 121 KQIHGQALKFGLDSVS-FVSNALITMYMKCGKCSDALLAYNEALELNPVAYNALITGFVE 179

Query: 209 SQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHL 268
           +Q  D G ++ R M ++G  P R T   +L  C    DL+ G+ +H        +    +
Sbjct: 180 NQQPDKGFEVLRMMYQDGFFPDRFTFVGLLGTCNSRDDLKRGELLHCQTIKLKLNSTAFI 239

Query: 269 SAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE- 327
              ++ MY +    L  A   F   + KD++ W++ I   S   D  +A++ F  M  E 
Sbjct: 240 GNLIITMYSKLN-LLEEAEKAFRSIEEKDLISWNTFISSCSHCNDHEKALEAFKEMLNEC 298

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
           R+ P+  T  + L++C+  + + +G  +H ++++  L  DV  GNAL+NMY+KCG I  +
Sbjct: 299 RVRPDEFTFASALAACSGLASMCNGKQIHGHLIRTRLYQDVGAGNALINMYAKCGCIAKA 358

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHA 447
           + IF++M  ++ VSW T+I+G+G HG+G +A +LF +M+  GV+PD++T + +L+A NHA
Sbjct: 359 YYIFSKMEHQNLVSWNTMIAGFGNHGFGGKAFELFAKMKTMGVKPDSVTFVGLLTASNHA 418

Query: 448 GLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSS 507
           GLV E    FN++ +   I+  IEH++C +DLLG++G++ +A + +   P    T +L S
Sbjct: 419 GLVDEGLVYFNSMEETYGISPEIEHFSCLIDLLGRAGRLNEAKEYMKKFPFGHDTVVLGS 478

Query: 508 LVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567
           L+SACR+HG ++  +  A QL++ +P   + Y LLS + +    W G  E W++++  GL
Sbjct: 479 LLSACRLHGDVDTGKCFARQLLKLQPATTSPYVLLSNLYASDEMWDGVAEAWKLLKGSGL 538

Query: 568 SKSYGFSRIE 577
            K  G S IE
Sbjct: 539 KKEPGHSLIE 548



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 99/317 (31%), Positives = 156/317 (49%), Gaps = 6/317 (1%)

Query: 130 ELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
           EL+  +I  CS+   L  G  +HA+ I   +    V VS  +L+LY+KC     A +VF+
Sbjct: 4   ELVGSLIHQCSKTKALRQGLPLHAIAIKTAT-RSDVIVSNHILNLYAKCRKLREARQVFD 62

Query: 190 QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
           +M  RN VSW+AMISG        + + LF  +    + P       V+ ACA L+ L  
Sbjct: 63  EMSERNLVSWSAMISGYEQIGEPISALGLFSKLN---IVPNEYVYASVISACASLKGLVQ 119

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
           GK IHG A   G D    +S AL+ MY +C +    A + +      + V ++++I G+ 
Sbjct: 120 GKQIHGQALKFGLDSVSFVSNALITMYMKCGKC-SDALLAYNEALELNPVAYNALITGFV 178

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
           ++    +  ++   M  +   P+  T + +L +C  +  L  G  +HC  +K  LN    
Sbjct: 179 ENQQPDKGFEVLRMMYQDGFFPDRFTFVGLLGTCNSRDDLKRGELLHCQTIKLKLNSTAF 238

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM-QES 428
           IGN ++ MYSK   +  + + F  +  +D +SW T IS        E+AL+ F EM  E 
Sbjct: 239 IGNLIITMYSKLNLLEEAEKAFRSIEEKDLISWNTFISSCSHCNDHEKALEAFKEMLNEC 298

Query: 429 GVEPDAITVLAILSACN 445
            V PD  T  + L+AC+
Sbjct: 299 RVRPDEFTFASALAACS 315


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 180/522 (34%), Positives = 307/522 (58%), Gaps = 4/522 (0%)

Query: 58  GSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMF 117
           G   D ++SN LI MY K  +   A  +FD M  R+ +SW +++    QNG  + SL +F
Sbjct: 2   GFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLF 61

Query: 118 REMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSK 177
            +M L G        +  +  C  +  L++GRQIH + +  G F++   V  +++D+YSK
Sbjct: 62  SKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTG-FDMVNVVGNSIIDMYSK 120

Query: 178 CHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIV 237
           C     A  +FE M +RN +SW AMI+G   +   +  + LF+ MQ  G      T T  
Sbjct: 121 CGRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTST 180

Query: 238 LLACAELRDLRNGKAIHGYAYCCGFDF--DHHLSAALMHMYCECTEALHPARIIFERTKV 295
           L AC++L  ++ G  IH +    GF +  +  ++ AL+ +Y +C + L  AR +F   + 
Sbjct: 181 LKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGK-LFMARRVFSHIEE 239

Query: 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV 355
           K V+ W+++I GY+Q G+L+E+M+LF ++R   I+ +   L +++      + +  G  +
Sbjct: 240 KHVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQM 299

Query: 356 HCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYG 415
           H + +K     D+S+ N++++MY KCG I  + ++F+EM AR+ +SWT +I+GYG HG G
Sbjct: 300 HAFAIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGLG 359

Query: 416 EEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC 475
           +EA++LF EMQ    EPD +T LA+L  C+H+GLV++ +  F+ +     I   +EHYAC
Sbjct: 360 KEAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHYAC 419

Query: 476 YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPEN 535
            VDLLG++G++++A  +V +MP++ +  I  +L+SACR+HG LE+ + +   L+  + EN
Sbjct: 420 MVDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLSACRVHGDLELGKEVGGILLRLDSEN 479

Query: 536 AANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
             NY ++S + +++G W   E +  ++++K L K  G S +E
Sbjct: 480 PVNYVMMSNIYADAGYWKECERIRELVKSKKLKKEAGRSWVE 521



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 126/452 (27%), Positives = 222/452 (49%), Gaps = 13/452 (2%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           SG+  N     + +KAC         G Q+H   +K+G D   V+ NS+I MY+K  +  
Sbjct: 67  SGVKPNDFTFSTNLKACGLLNGLD-IGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRIN 125

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
            A  +F+ MP R+ ISWN++I  +T  GF  ++L +F++M   G  L        +  CS
Sbjct: 126 EAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACS 185

Query: 141 QIGELELGRQIHALVIVDGS-FELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSW 199
            +G ++ G QIHA +I  G  + ++  V+ AL+DLY KC    +A RVF  +  ++ +SW
Sbjct: 186 DLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISW 245

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
           TA+I G     N    ++LFR ++   ++     L+ ++   A+   ++ GK +H +A  
Sbjct: 246 TALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIK 305

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
                D  +  +++ MY +C   ++ A  +F     ++V+ W+ +I GY + G   EA++
Sbjct: 306 VPSGVDISVCNSILDMYLKCG-MINEAERLFSEMPARNVISWTVMITGYGKHGLGKEAIR 364

Query: 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA-GLNFDVSIGNALMNMY 378
           LF  M+L+  EP+ VT LA+L  C+    +  G      +    G+   V     ++++ 
Sbjct: 365 LFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHYACMVDLL 424

Query: 379 SKCGSITSSHQIFNEMAARDFVS-WTTLISGYGFHG---YGEEALQLFLEMQESGVEPDA 434
            + G +  +  + + M     V  W TL+S    HG    G+E   + L +      P  
Sbjct: 425 GRAGRLKEAKNLVDSMPLEANVGIWQTLLSACRVHGDLELGKEVGGILLRLDSE--NPVN 482

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
             +++ + A   AG  KE E +   ++K KK+
Sbjct: 483 YVMMSNIYA--DAGYWKECERI-RELVKSKKL 511


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 188/570 (32%), Positives = 316/570 (55%), Gaps = 4/570 (0%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E+ + L+K+ +H  GL  ++  L S++ AC+ A      G QLH    K G  ++  I  
Sbjct: 371 EKAMELFKR-MHLDGLEPDSNTLASLVVACS-ADGTLFRGQQLHAYTTKLGFASNNKIEG 428

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +L+++YAK +  E+A   F E    + + WN ++  +        S  +FR+M +   V 
Sbjct: 429 ALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVP 488

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
                  I+  C ++G+LELG QIH+ +I   +F+L+ +V + L+D+Y+K      A  +
Sbjct: 489 NQYTYPSILKTCIRLGDLELGEQIHSQII-KTNFQLNAYVCSVLIDMYAKLGKLDTAWDI 547

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
             +   ++ VSWT MI+G       D  +  FR M   G++   V LT  + ACA L+ L
Sbjct: 548 LIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQAL 607

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
           + G+ IH  A   GF  D     AL+ +Y  C + +  + + FE+T+  D + W++++ G
Sbjct: 608 KEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGK-IEESYLAFEQTEAGDNIAWNALVSG 666

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
           + QSG+  EA+++F RM  E I+ N+ T  + + + +  + +  G  VH  I K G + +
Sbjct: 667 FQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSE 726

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
             + NAL++MY+KCGSI+ + + F E++ ++ VSW  +I+ Y  HG+G EAL  F +M  
Sbjct: 727 TEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIH 786

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487
           S V P+ +T++ +LSAC+H GLV +    F ++  E  ++   EHY C VD+L ++G + 
Sbjct: 787 SNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLS 846

Query: 488 DACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCS 547
            A + +  MP+KP   +  +L+SAC +H  +E+ E  AH L+E EPE++A Y LLS + +
Sbjct: 847 RAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYA 906

Query: 548 ESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            S  W   +   + M+ KG+ K  G S IE
Sbjct: 907 VSKKWDARDLTRQKMKEKGVKKEPGQSWIE 936



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 135/475 (28%), Positives = 220/475 (46%), Gaps = 8/475 (1%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G+  N   L  +++ C         G +LH   LK G D++  +S  L   Y        
Sbjct: 79  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYG 138

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A+++FDEMP R   +WN +I              +F  M            +G++  C  
Sbjct: 139 AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRG 198

Query: 142 IG-ELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
                ++  QIHA ++  G    S  V   L+DLYS+     +A RVF+ + +++  SW 
Sbjct: 199 GSVAFDVVEQIHARILYQG-LRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWV 257

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
           AMISG   ++     I LF  M   G+ PT    + VL AC ++  L  G+ +HG     
Sbjct: 258 AMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKL 317

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
           GF  D ++  AL+ +Y      L  A  IF     +D V ++++I G SQ G   +AM+L
Sbjct: 318 GFSSDTYVCNALVSLYFHLGN-LISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMEL 376

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
           F RM L+ +EP+S TL +++ +C+    L  G  +H Y  K G   +  I  AL+N+Y+K
Sbjct: 377 FKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAK 436

Query: 381 CGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
           C  I ++   F E    + V W  ++  YG       + ++F +MQ   + P+  T  +I
Sbjct: 437 CADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSI 496

Query: 441 LSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYV--DLLGKSGKIEDACKVV 493
           L  C   G ++  E + + ++K       +  Y C V  D+  K GK++ A  ++
Sbjct: 497 LKTCIRLGDLELGEQIHSQIIKTN---FQLNAYVCSVLIDMYAKLGKLDTAWDIL 548



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 112/406 (27%), Positives = 189/406 (46%), Gaps = 35/406 (8%)

Query: 143 GELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAM 202
           G L+ GR++H+ ++  G  + +  +S  L D Y        A +VF++M  R   +W  M
Sbjct: 99  GSLDEGRKLHSQILKLG-LDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKM 157

Query: 203 ISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNG-------KAIHG 255
           I              LF  M  E V P   T + VL AC      R G       + IH 
Sbjct: 158 IKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEAC------RGGSVAFDVVEQIHA 211

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
                G      +   L+ +Y      +  AR +F+  ++KD   W ++I G S++   +
Sbjct: 212 RILYQGLRDSTVVCNPLIDLYSR-NGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEA 270

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           EA++LF  M +  I P      ++LS+C +   L  G  +H  ++K G + D  + NAL+
Sbjct: 271 EAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALV 330

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           ++Y   G++ S+  IF+ M+ RD V++ TLI+G    GYGE+A++LF  M   G+EPD+ 
Sbjct: 331 SLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSN 390

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMK-----EKKIALAIEHYACYVDLLGKSGKIEDAC 490
           T+ +++ AC+  G +   + L     K       KI  A+      ++L  K   IE A 
Sbjct: 391 TLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGAL------LNLYAKCADIETAL 444

Query: 491 ---------KVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQ 527
                     VV    M  +  +L  L ++ RI  ++++ E++ +Q
Sbjct: 445 DYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQ 490


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 188/570 (32%), Positives = 316/570 (55%), Gaps = 4/570 (0%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E+ + L+K+ +H  GL  ++  L S++ AC+ A      G QLH    K G  ++  I  
Sbjct: 331 EKAMELFKR-MHLDGLEPDSNTLASLVVACS-ADGTLFRGQQLHAYTTKLGFASNNKIEG 388

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +L+++YAK +  E+A   F E    + + WN ++  +        S  +FR+M +   V 
Sbjct: 389 ALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVP 448

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
                  I+  C ++G+LELG QIH+ +I   +F+L+ +V + L+D+Y+K      A  +
Sbjct: 449 NQYTYPSILKTCIRLGDLELGEQIHSQII-KTNFQLNAYVCSVLIDMYAKLGKLDTAWDI 507

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
             +   ++ VSWT MI+G       D  +  FR M   G++   V LT  + ACA L+ L
Sbjct: 508 LIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQAL 567

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
           + G+ IH  A   GF  D     AL+ +Y  C + +  + + FE+T+  D + W++++ G
Sbjct: 568 KEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGK-IEESYLAFEQTEAGDNIAWNALVSG 626

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
           + QSG+  EA+++F RM  E I+ N+ T  + + + +  + +  G  VH  I K G + +
Sbjct: 627 FQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSE 686

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
             + NAL++MY+KCGSI+ + + F E++ ++ VSW  +I+ Y  HG+G EAL  F +M  
Sbjct: 687 TEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIH 746

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487
           S V P+ +T++ +LSAC+H GLV +    F ++  E  ++   EHY C VD+L ++G + 
Sbjct: 747 SNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLS 806

Query: 488 DACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCS 547
            A + +  MP+KP   +  +L+SAC +H  +E+ E  AH L+E EPE++A Y LLS + +
Sbjct: 807 RAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYA 866

Query: 548 ESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            S  W   +   + M+ KG+ K  G S IE
Sbjct: 867 VSKKWDARDLTRQKMKEKGVKKEPGQSWIE 896



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 135/475 (28%), Positives = 220/475 (46%), Gaps = 8/475 (1%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G+  N   L  +++ C         G +LH   LK G D++  +S  L   Y        
Sbjct: 39  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYG 98

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A+++FDEMP R   +WN +I              +F  M            +G++  C  
Sbjct: 99  AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRG 158

Query: 142 IG-ELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
                ++  QIHA ++  G    S  V   L+DLYS+     +A RVF+ + +++  SW 
Sbjct: 159 GSVAFDVVEQIHARILYQG-LRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWV 217

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
           AMISG   ++     I LF  M   G+ PT    + VL AC ++  L  G+ +HG     
Sbjct: 218 AMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKL 277

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
           GF  D ++  AL+ +Y      L  A  IF     +D V ++++I G SQ G   +AM+L
Sbjct: 278 GFSSDTYVCNALVSLYFHLGN-LISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMEL 336

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
           F RM L+ +EP+S TL +++ +C+    L  G  +H Y  K G   +  I  AL+N+Y+K
Sbjct: 337 FKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAK 396

Query: 381 CGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
           C  I ++   F E    + V W  ++  YG       + ++F +MQ   + P+  T  +I
Sbjct: 397 CADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSI 456

Query: 441 LSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYV--DLLGKSGKIEDACKVV 493
           L  C   G ++  E + + ++K       +  Y C V  D+  K GK++ A  ++
Sbjct: 457 LKTCIRLGDLELGEQIHSQIIKTN---FQLNAYVCSVLIDMYAKLGKLDTAWDIL 508



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 112/406 (27%), Positives = 189/406 (46%), Gaps = 35/406 (8%)

Query: 143 GELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAM 202
           G L+ GR++H+ ++  G  + +  +S  L D Y        A +VF++M  R   +W  M
Sbjct: 59  GSLDEGRKLHSQILKLG-LDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKM 117

Query: 203 ISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNG-------KAIHG 255
           I              LF  M  E V P   T + VL AC      R G       + IH 
Sbjct: 118 IKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEAC------RGGSVAFDVVEQIHA 171

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
                G      +   L+ +Y      +  AR +F+  ++KD   W ++I G S++   +
Sbjct: 172 RILYQGLRDSTVVCNPLIDLYSR-NGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEA 230

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           EA++LF  M +  I P      ++LS+C +   L  G  +H  ++K G + D  + NAL+
Sbjct: 231 EAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALV 290

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           ++Y   G++ S+  IF+ M+ RD V++ TLI+G    GYGE+A++LF  M   G+EPD+ 
Sbjct: 291 SLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSN 350

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMK-----EKKIALAIEHYACYVDLLGKSGKIEDAC 490
           T+ +++ AC+  G +   + L     K       KI  A+      ++L  K   IE A 
Sbjct: 351 TLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGAL------LNLYAKCADIETAL 404

Query: 491 ---------KVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQ 527
                     VV    M  +  +L  L ++ RI  ++++ E++ +Q
Sbjct: 405 DYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQ 450


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 189/560 (33%), Positives = 323/560 (57%), Gaps = 13/560 (2%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           SGL  +    PSV+KAC         G ++HC ALK G   D  ++ SLI +Y ++    
Sbjct: 147 SGLQPDYRTFPSVLKACRNVTD----GNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVV 202

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
           +A  LFDEMP RD  SWN++I+ + Q+G    +L +   +      + +  +  ++S C+
Sbjct: 203 NARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLR----AMDSVTVVSLLSACT 258

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
           + G+   G  IH+  I  G  E  +FVS  L+DLY++        +VF++M +R+ +SW 
Sbjct: 259 EAGDFNRGVTIHSYSIKHG-LESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWN 317

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
           ++I     ++     I LF+ M+   ++P  +TL  +    ++L ++R  +++ G+    
Sbjct: 318 SIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRK 377

Query: 261 G-FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
           G F  D  +  A++ MY +    +  AR +F     KDV+ W++II GY+Q+G  SEA++
Sbjct: 378 GWFLEDITIGNAVVVMYAKLG-LVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIE 436

Query: 320 LFSRMRLE--RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
           +++ M  E   I  N  T +++L +C++   L  G+ +H  ++K GL  DV +G +L +M
Sbjct: 437 MYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADM 496

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           Y KCG +  +  +F ++   + V W TLI+ +GFHG+GE+A+ LF EM + GV+PD IT 
Sbjct: 497 YGKCGRLDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITF 556

Query: 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
           + +LSAC+H+GLV E E  F  +  +  I  +++HY C VDL G++G++E A   + +MP
Sbjct: 557 VTLLSACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIKSMP 616

Query: 498 MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEE 557
           ++P   I  +L+SACR+HG +++ ++ +  L E EPE+   + LLS + + +G W G +E
Sbjct: 617 LQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDE 676

Query: 558 VWRVMRAKGLSKSYGFSRIE 577
           +  +   KGL K+ G+S +E
Sbjct: 677 IRSITSGKGLRKTPGWSSME 696



 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 149/512 (29%), Positives = 262/512 (51%), Gaps = 28/512 (5%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           LH   + S +  +  IS  L+++Y        A   FD +  RD  +WN +I+ + + G+
Sbjct: 73  LHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGY 132

Query: 110 ---YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
               +R   +F  M   G          ++  C  + +   G +IH L +  G F   V+
Sbjct: 133 SSEVIRCFSLF--MLSSGLQPDYRTFPSVLKACRNVTD---GNKIHCLALKFG-FMWDVY 186

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGI---DLFRAMQ 223
           V+ +L+ LY +    + A  +F++M  R+  SW AMISG   S N    +   D  RAM 
Sbjct: 187 VAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLRAMD 246

Query: 224 REGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEAL 283
                   VT+  +L AC E  D   G  IH Y+   G + +  +S  L+ +Y E   +L
Sbjct: 247 -------SVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFG-SL 298

Query: 284 HPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC 343
              + +F+R  V+D++ W+SII+ Y  +     A+ LF  MRL RI+P+ +TL+++ S  
Sbjct: 299 KDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASIL 358

Query: 344 TRQSFLSHGLGVHCYIMKAGLNF-DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSW 402
           ++   +     V  + ++ G    D++IGNA++ MY+K G + S+  +FN +  +D +SW
Sbjct: 359 SQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISW 418

Query: 403 TTLISGYGFHGYGEEALQLFLEMQESGVEPDAI--TVLAILSACNHAGLVKEAETLFNNV 460
            T+ISGY  +G+  EA++++  M+E G E  A   T +++L AC+ AG +++   L   +
Sbjct: 419 NTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRL 478

Query: 461 MKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEV 520
           +K   + L +       D+ GK G+++DA  +   +P + ++   ++L++    HG  E 
Sbjct: 479 LK-NGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIP-RVNSVPWNTLIACHGFHGHGEK 536

Query: 521 AEMLAHQLIE--AEPENAANYTLLSMVCSESG 550
           A ML  ++++   +P++    TLLS  CS SG
Sbjct: 537 AVMLFKEMLDEGVKPDHITFVTLLS-ACSHSG 567


>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
 gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 182/569 (31%), Positives = 306/569 (53%), Gaps = 3/569 (0%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           + L L+ +     GL+ +  IL   +KAC    +   FG  LH  ++K+       + ++
Sbjct: 50  EALSLFSKMWVEPGLHMDPFILSLALKACGLNMS-VSFGESLHGYSVKTDFVNSVFVGSA 108

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           L+ MY K  K +    +F EMP R+ +SW +II    + G+   +L  F +M++      
Sbjct: 109 LVDMYMKIGKVDEGCIVFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCD 168

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
               +  +  C+  G L  GR+IH   +  G F    FV+  L  +Y+KC      LR+F
Sbjct: 169 TYTFSSALKACADSGALNYGREIHCQTLKKG-FTAVSFVANTLATMYNKCGKLDYGLRLF 227

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
           E M  R+ VSWT +I   +     +  +  FR M+   V P   T   V+  CA L  + 
Sbjct: 228 ESMTQRDVVSWTTIIMSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIE 287

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
            G+ +H +    G      ++ ++M MY +C + L  A  +F+    +D++ WS++I GY
Sbjct: 288 WGEQLHAHVIRRGLVDSLSVANSIMAMYSKCWQ-LDLASTVFQGLSRRDIISWSTMISGY 346

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
           +Q G   EA    S MR E   PN     ++LS C   + L  G  +H +++  GL  + 
Sbjct: 347 AQGGCGEEAFDYLSWMRREGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQNT 406

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
            + +AL+NMYSKCGSI  + +IF+E    + VSWT +I+GY  HGY +EA+ LF ++ + 
Sbjct: 407 MVQSALINMYSKCGSIKEASKIFDEAEYNNIVSWTAMINGYAEHGYSQEAIDLFKKLPKV 466

Query: 429 GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIED 488
           G+ PD++T +A+L+AC+HAGLV      FN++ K  +I  + +HY C +DLL ++G++ D
Sbjct: 467 GLRPDSVTFIAVLAACSHAGLVDLGFHYFNSLSKVHQICPSKDHYGCMIDLLCRAGRLND 526

Query: 489 ACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSE 548
           A  ++ +MP +    + S+L+ ACRIHG ++  +  A ++++ +P  A  +  L+ + + 
Sbjct: 527 AESMIQSMPFQRDDVVWSTLLRACRIHGDVDCGKRAAEKILQLDPNCAVTHITLANMYAA 586

Query: 549 SGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            G W  A EV ++M++KG+ K  G+S I+
Sbjct: 587 KGKWKEAAEVRKMMKSKGVVKEPGWSWIK 615



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 128/431 (29%), Positives = 213/431 (49%), Gaps = 12/431 (2%)

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL-CGF 125
           N ++    K     +A QLFD+M  RD ISW +II+ +        +L +F +M++  G 
Sbjct: 5   NLVLKNLVKTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGL 64

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
            +   +L+  +  C     +  G  +H    V   F  SVFV +AL+D+Y K        
Sbjct: 65  HMDPFILSLALKACGLNMSVSFGESLHGYS-VKTDFVNSVFVGSALVDMYMKIGKVDEGC 123

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
            VF++M +RN VSWTA+I+G + +      +  F  M  + V     T +  L ACA+  
Sbjct: 124 IVFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSG 183

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
            L  G+ IH      GF     ++  L  MY +C +  +  R +FE    +DVV W++II
Sbjct: 184 ALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLR-LFESMTQRDVVSWTTII 242

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
               Q G    A+K F RMR   + PN  T  A++S C     +  G  +H ++++ GL 
Sbjct: 243 MSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRRGLV 302

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
             +S+ N++M MYSKC  +  +  +F  ++ RD +SW+T+ISGY   G GEEA      M
Sbjct: 303 DSLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQGGCGEEAFDYLSWM 362

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEH----YACYVDLLG 481
           +  G  P+     ++LS C +  ++++ + L  +V+      + +E      +  +++  
Sbjct: 363 RREGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVL-----CVGLEQNTMVQSALINMYS 417

Query: 482 KSGKIEDACKV 492
           K G I++A K+
Sbjct: 418 KCGSIKEASKI 428



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 128/286 (44%), Gaps = 38/286 (13%)

Query: 280 TEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE---RIEPNSVTL 336
           T  L+ AR +F++   +D + W++II GY    + +EA+ LFS+M +E    ++P  ++L
Sbjct: 14  TGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGLHMDPFILSL 73

Query: 337 LAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA 396
              L +C     +S G  +H Y +K      V +G+AL++MY K G +     +F EM  
Sbjct: 74  --ALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCIVFKEMPL 131

Query: 397 RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETL 456
           R+ VSWT +I+G    GY +EAL  F +M    V  D  T  + L AC  +G +     +
Sbjct: 132 RNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGALNYGREI 191

Query: 457 FNNVMKE--KKIALAIEHYACYVDLLGK----------------------------SGKI 486
               +K+    ++      A   +  GK                             G+ 
Sbjct: 192 HCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMSNVQIGQE 251

Query: 487 EDACKVVSTM---PMKPSTRILSSLVSACRIHGRLEVAEMLAHQLI 529
           E+A K    M    + P+    ++++S C   GR+E  E L   +I
Sbjct: 252 ENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVI 297



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 71/144 (49%), Gaps = 5/144 (3%)

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ-ESGV 430
           N ++    K G + ++ Q+F++M  RD +SWTT+ISGY       EAL LF +M  E G+
Sbjct: 5   NLVLKNLVKTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGL 64

Query: 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDAC 490
             D   +   L AC     V   E+L    +K   +       A  VD+  K GK+++ C
Sbjct: 65  HMDPFILSLALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSA-LVDMYMKIGKVDEGC 123

Query: 491 KVVSTMPMK---PSTRILSSLVSA 511
            V   MP++     T I++ LV A
Sbjct: 124 IVFKEMPLRNVVSWTAIIAGLVRA 147


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 184/500 (36%), Positives = 288/500 (57%), Gaps = 23/500 (4%)

Query: 78  KPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS 137
           + ESA +LFD++  RD ISWNS+I+ +  NG   R L ++++M   G  +    +  ++ 
Sbjct: 62  RSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLV 121

Query: 138 LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197
            C++ G L LG+ +H+L I   SFE  +  S  LLD+YSKC     ALRVFE+M  RN V
Sbjct: 122 GCAKSGTLSLGKAVHSLAI-KSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVV 180

Query: 198 SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
           SWT+MI+G       D  I L + M++EGVK   V +T +L ACA    L NGK +H Y 
Sbjct: 181 SWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYI 240

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
                  +  +  ALM MY +C  ++  A  +F    VKD++ W++++      G+L   
Sbjct: 241 KANNMASNLFVCNALMDMYAKCG-SMEGANSVFSTMVVKDIISWNTMV------GEL--- 290

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
                       +P+S T+  IL +C   S L  G  +H YI++ G + D  + NAL+++
Sbjct: 291 ------------KPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDL 338

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           Y KCG +  +  +F+ + ++D VSWT +I+GYG HGYG EA+  F EM+++G+EPD ++ 
Sbjct: 339 YVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSF 398

Query: 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
           ++IL AC+H+GL+++    F  +  +  I   +EHYAC VDLL ++G +  A K + T+P
Sbjct: 399 ISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLP 458

Query: 498 MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEE 557
           + P   I  +L+  CRI+  +E+AE +A ++ E EPEN   Y LL+ + +E+  W   + 
Sbjct: 459 IAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKR 518

Query: 558 VWRVMRAKGLSKSYGFSRIE 577
           +   +  KGL K+ G S IE
Sbjct: 519 MREKIGKKGLRKNPGCSWIE 538



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 120/410 (29%), Positives = 212/410 (51%), Gaps = 29/410 (7%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           VS    E+ L +YKQ ++  G+  + A + SV+  CA + T    G  +H  A+KS  + 
Sbjct: 89  VSNGLTERGLGIYKQMMYL-GIDVDLATIISVLVGCAKSGTLS-LGKAVHSLAIKSSFER 146

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
               SN+L+ MY+K    + A ++F++M  R+ +SW S+I  +T++G+   ++ + ++M 
Sbjct: 147 RINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQME 206

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
             G  L    +  I+  C++ G L+ G+ +H  +  + +   ++FV  AL+D+Y+KC   
Sbjct: 207 KEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKAN-NMASNLFVCNALMDMYAKCGSM 265

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             A  VF  MV+++ +SW  M+                       +KP   T+  +L AC
Sbjct: 266 EGANSVFSTMVVKDIISWNTMVG---------------------ELKPDSRTMACILPAC 304

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A L  L  GK IHGY    G+  D H++ AL+ +Y +C   L  AR++F+    KD+V W
Sbjct: 305 ASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCG-VLGLARLLFDMIPSKDLVSW 363

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           + +I GY   G  +EA+  F+ MR   IEP+ V+ ++IL +C+    L  G     YIMK
Sbjct: 364 TVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFF-YIMK 422

Query: 362 AGLNFDVSIGN--ALMNMYSKCGSITSSHQIFNEMA-ARDFVSWTTLISG 408
              N +  + +   ++++ S+ G+++ +++    +  A D   W  L+ G
Sbjct: 423 NDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCG 472



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 139/307 (45%), Gaps = 70/307 (22%)

Query: 272 LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP 331
           L+  Y  C + L   R +F+  + K+V +W+ ++  Y++ GD  E++ LF  M  + IE 
Sbjct: 2   LVSFYATCGD-LKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEG 60

Query: 332 ---------------------NSV------------------------------TLLAIL 340
                                NS+                              T++++L
Sbjct: 61  KRSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVL 120

Query: 341 SSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFV 400
             C +   LS G  VH   +K+     ++  N L++MYSKCG +  + ++F +M  R+ V
Sbjct: 121 VGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVV 180

Query: 401 SWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNV 460
           SWT++I+GY   G+ + A+ L  +M++ GV+ D + + +IL AC  +G +   + + + +
Sbjct: 181 SWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYI 240

Query: 461 MKEKKIALAIEHYAC--YVDLLGKSGKIEDACKVVSTM-------------PMKPSTRIL 505
              K   +A   + C   +D+  K G +E A  V STM              +KP +R +
Sbjct: 241 ---KANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTM 297

Query: 506 SSLVSAC 512
           + ++ AC
Sbjct: 298 ACILPAC 304


>gi|297834380|ref|XP_002885072.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330912|gb|EFH61331.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1134

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 189/527 (35%), Positives = 299/527 (56%), Gaps = 6/527 (1%)

Query: 57  SGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEM 116
           SGS  + + SN LI MY K  +   AY++FD MP R+ +SW ++++    NG    SL +
Sbjct: 398 SGSGLNLITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSL 457

Query: 117 FREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYS 176
           F EM   G        +  +  C  +  LE G QIH   +  G FE+ V V  +L+D+YS
Sbjct: 458 FTEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIG-FEMMVEVGNSLVDMYS 516

Query: 177 KCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK--PTRVTL 234
           KC     A +VF  MV R+ +SW AMI+G + +      +  F  MQ   +K  P   TL
Sbjct: 517 KCGRINEAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTL 576

Query: 235 TIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH--LSAALMHMYCECTEALHPARIIFER 292
           T +L AC+    +  GK IHG+    GF       ++ +L+ +Y +C   L  AR  F++
Sbjct: 577 TSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGN-LFSARKAFDQ 635

Query: 293 TKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHG 352
            K K ++ WSS+I GY+Q GD  EAM LF R++    + +S  L +I+      + L  G
Sbjct: 636 IKEKTMISWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDSFVLSSIIGVFADFALLQQG 695

Query: 353 LGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFH 412
             +   ++K     + S+ N+L++MY KCG +  + + F EM  +D +SWT +I+GYG H
Sbjct: 696 KQMQALVVKLPSGLETSVSNSLVDMYLKCGLVDEAEKCFAEMQLKDVISWTVMITGYGKH 755

Query: 413 GYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEH 472
           G G++A+ +F +M    +EPD +  LA+LSAC+H+G++KE E LF+ +++ + I   +EH
Sbjct: 756 GLGKKAVSIFNKMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETQGIKPRVEH 815

Query: 473 YACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE 532
           YAC VDLLG++G++++A  +V TMP+KP+  I  +L+S CR+HG +E+ + +   L+  +
Sbjct: 816 YACVVDLLGRAGRLKEAKHLVDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRID 875

Query: 533 PENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIENE 579
            +N ANY ++S +  ++G W        +   KGL K  G S +E E
Sbjct: 876 GKNPANYVMMSNLYGQAGYWNEQGNARELGSIKGLQKEAGMSWVEIE 922



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 107/418 (25%), Positives = 200/418 (47%), Gaps = 10/418 (2%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           E+   G+Y N     + +KAC      +  GLQ+H   LK G +    + NSL+ MY+K 
Sbjct: 460 EMGRQGIYPNEFTFSTNLKACGLLNALEK-GLQIHGFCLKIGFEMMVEVGNSLVDMYSKC 518

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE--LLAG 134
            +   A ++F  M  R  ISWN++I  +   G+  R+L  F  M       + +   L  
Sbjct: 519 GRINEAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTS 578

Query: 135 IISLCSQIGELELGRQIHALVIVDGSF-ELSVFVSTALLDLYSKCHHWLIALRVFEQMVI 193
           ++  CS  G +  G+QIH  ++  G     S  ++ +L+DLY KC +   A + F+Q+  
Sbjct: 579 LLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIKE 638

Query: 194 RNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAI 253
           +  +SW+++I G     ++   + LF+ +Q    +     L+ ++   A+   L+ GK +
Sbjct: 639 KTMISWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDSFVLSSIIGVFADFALLQQGKQM 698

Query: 254 HGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGD 313
                      +  +S +L+ MY +C   +  A   F   ++KDV+ W+ +I GY + G 
Sbjct: 699 QALVVKLPSGLETSVSNSLVDMYLKCG-LVDEAEKCFAEMQLKDVISWTVMITGYGKHGL 757

Query: 314 LSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA-GLNFDVSIGN 372
             +A+ +F++M    IEP+ V  LA+LS+C+    +  G  +   +++  G+   V    
Sbjct: 758 GKKAVSIFNKMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETQGIKPRVEHYA 817

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVS-WTTLISGYGFHG---YGEEALQLFLEMQ 426
            ++++  + G +  +  + + M  +  V  W TL+S    HG    G+E  ++ L + 
Sbjct: 818 CVVDLLGRAGRLKEAKHLVDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRID 875


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 183/548 (33%), Positives = 315/548 (57%), Gaps = 9/548 (1%)

Query: 33  VIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYR 92
           ++K C   +     G ++H   +KSG   D      L +MYAK  +   A ++FD MP R
Sbjct: 141 LLKVCG-DEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPER 199

Query: 93  DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELEL---GR 149
           D +SWN+I+  ++QNG    +LEM   M  C   LK   +  I+S+   +  L L   G+
Sbjct: 200 DLVSWNTIVAGYSQNGMARMALEMVNLM--CEENLKPSFIT-IVSVLPAVSALRLIRIGK 256

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
           +IH   +  G F+  V ++TAL+D+Y+KC     A  +F+ M+ RN VSW +MI   + +
Sbjct: 257 EIHGYAMRAG-FDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQN 315

Query: 210 QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS 269
           +N    + +F+ M  EGVKPT V++   L ACA+L DL  G+ IH  +     D +  + 
Sbjct: 316 ENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVV 375

Query: 270 AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
            +L+ MYC+C E +  A  +F + + + +V W+++I G++Q+G   EA+  FS+M+   +
Sbjct: 376 NSLISMYCKCKE-VDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTV 434

Query: 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
           +P++ T ++++++    S   H   +H  +M+  L+ +V +  AL++MY+KCG+I  +  
Sbjct: 435 KPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARL 494

Query: 390 IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL 449
           IF+ M+ R   +W  +I GYG HG G+ AL+LF EMQ+  + P+ +T L+++SAC+H+GL
Sbjct: 495 IFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSGL 554

Query: 450 VKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLV 509
           V+     F+ + +   I  +++HY   VDLLG++G++ +A   +  MP+KP+  +  +++
Sbjct: 555 VEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAML 614

Query: 510 SACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSK 569
            AC+IH  +  AE +A +L E  PE+   + LL+ +   +  W    +V   M  +GL K
Sbjct: 615 GACQIHKNVNFAEKVAERLFELNPEDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRK 674

Query: 570 SYGFSRIE 577
           + G S +E
Sbjct: 675 TPGCSMVE 682



 Score =  211 bits (537), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 147/554 (26%), Positives = 278/554 (50%), Gaps = 29/554 (5%)

Query: 4   KHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADP 63
           +HF  Q  ++      P+ +Y + A L  +++ C+  +  +H  L L     K+G   + 
Sbjct: 22  RHFLSQRNYI------PANVYEHPAAL--LLERCSSLKELRHI-LPL---IFKNGLYQEH 69

Query: 64  VISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC 123
           +    L+S++ ++   + A ++F+ +  +  + + +++  F +     ++L+ F  M   
Sbjct: 70  LFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDD 129

Query: 124 GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
                      ++ +C    EL +G++IH L++  G F L +F  T L ++Y+KC     
Sbjct: 130 EVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSG-FSLDLFAMTGLENMYAKCRQVHE 188

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
           A +VF++M  R+ VSW  +++G   +      +++   M  E +KP+ +T+  VL A + 
Sbjct: 189 ARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSA 248

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
           LR +R GK IHGYA   GFD   +++ AL+ MY +C  +L  AR++F+    ++VV W+S
Sbjct: 249 LRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCG-SLKTARLLFDGMLERNVVSWNS 307

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           +I  Y Q+ +  EAM +F +M  E ++P  V+++  L +C     L  G  +H   ++  
Sbjct: 308 MIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELE 367

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
           L+ +VS+ N+L++MY KC  + ++  +F ++ +R  VSW  +I G+  +G   EAL  F 
Sbjct: 368 LDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFS 427

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLL 480
           +MQ   V+PD  T +++++A     +   A+ +   VM+   +K + +        VD+ 
Sbjct: 428 QMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVT----TALVDMY 483

Query: 481 GKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG----RLEVAEMLAHQLIEAEPENA 536
            K G I  A  +   M  +  T   ++++     HG     LE+ E +    I     N 
Sbjct: 484 AKCGAIMIARLIFDMMSERHVT-TWNAMIDGYGTHGIGKAALELFEEMQKGTIRP---NG 539

Query: 537 ANYTLLSMVCSESG 550
             +  +   CS SG
Sbjct: 540 VTFLSVISACSHSG 553


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 196/563 (34%), Positives = 326/563 (57%), Gaps = 8/563 (1%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           E+  + L  NT    + ++AC  +   +  G+ +H T LKS    +  ++N+LI+MYA+F
Sbjct: 272 EMQKASLAPNTYTFVAALQACEDSSFIKQ-GMFIHATVLKSSYYINVFVANALIAMYARF 330

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLA--G 134
            K   A  +F  M   DTISWNS+++ F QNG Y  +L+ + EM   G   K +L+A   
Sbjct: 331 GKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAG--QKPDLVAVIS 388

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           II+  ++ G    G QIHA  + +G  +  + V  +L+D+Y+K         +F++M  +
Sbjct: 389 IIAASARSGNTLHGMQIHAYAMKNG-LDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDK 447

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
           + VSWT +I+G   + ++   ++LFR +Q EG+    + ++ +LLAC+ L+ + + K IH
Sbjct: 448 DVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIH 507

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
            Y    G   D  L   ++ +Y EC    + AR+ FE  + KDVV W+S+I  Y  +G  
Sbjct: 508 SYIIRKGLS-DLVLQNGIVDVYGECGNVDYAARM-FELIEFKDVVSWTSMISCYVHNGLA 565

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
           +EA++LF  M+   +EP+S++L++ILS+    S L  G  +H ++++ G   + S+ + L
Sbjct: 566 NEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTL 625

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           ++MY++CG++  S  +FN +  +D V WT++I+ YG HG G  A+ LF  M++  + PD 
Sbjct: 626 VDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDH 685

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS 494
           I  +A+L AC+H+GL+ E      ++  E ++    EHYAC VDLLG++  +E+A + V 
Sbjct: 686 IAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVK 745

Query: 495 TMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLG 554
            M ++P+  +  +L+ AC+IH   E+ E+ A +L+E +PEN  NY L+S V S    W  
Sbjct: 746 GMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYSAERRWKD 805

Query: 555 AEEVWRVMRAKGLSKSYGFSRIE 577
            E V   M+A GL K+ G S IE
Sbjct: 806 VEXVRMRMKASGLKKNPGCSWIE 828



 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 161/544 (29%), Positives = 296/544 (54%), Gaps = 11/544 (2%)

Query: 10  TLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSL 69
           +L LY+ E+  SG+  +    P ++KAC   +  + +G ++H  A+K G  +   ++NS+
Sbjct: 164 SLELYR-EMRVSGIPLDACTFPCILKACGLLKD-RRYGAEVHGLAIKEGYVSIVFVANSI 221

Query: 70  ISMYAKFSKPESAYQLFDEMPYR-DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           + MY K +    A QLFD MP + D +SWNS+I+ ++ NG  + +L +F EM        
Sbjct: 222 VGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPN 281

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
                  +  C     ++ G  IHA V+   S+ ++VFV+ AL+ +Y++      A  +F
Sbjct: 282 TYTFVAALQACEDSSFIKQGMFIHATVL-KSSYYINVFVANALIAMYARFGKMGEAANIF 340

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
             M   + +SW +M+SG + +  Y   +  +  M+  G KP  V +  ++ A A   +  
Sbjct: 341 YNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTL 400

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
           +G  IH YA   G D D  +  +L+ MY +   ++     IF++   KDVV W++II G+
Sbjct: 401 HGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFC-SMKYMDCIFDKMPDKDVVSWTTIIAGH 459

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
           +Q+G  S A++LF  ++LE I+ + + + +IL +C+    +S    +H YI++ GL+ D+
Sbjct: 460 AQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLS-DL 518

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
            + N ++++Y +CG++  + ++F  +  +D VSWT++IS Y  +G   EAL+LF  M+E+
Sbjct: 519 VLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKET 578

Query: 429 GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIED 488
           GVEPD+I++++ILSA      +K+ + +   +++ K   L     +  VD+  + G +E 
Sbjct: 579 GVEPDSISLVSILSAAASLSALKKGKEIHGFLIR-KGFVLEGSLASTLVDMYARCGTLEK 637

Query: 489 ACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE--PENAANYTLLSMVC 546
           +  V + +  K    + +S+++A  +HG    A  L  ++ +    P++ A   +L   C
Sbjct: 638 SRNVFNFIRNKDLV-LWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVL-YAC 695

Query: 547 SESG 550
           S SG
Sbjct: 696 SHSG 699



 Score =  226 bits (576), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 140/489 (28%), Positives = 259/489 (52%), Gaps = 9/489 (1%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPV-ISNSLISMYAKFSKPESAYQLFDEMP 90
           SV++ C   +     G Q+H   + S +  + V +S  L+ MY K      A +LFD MP
Sbjct: 83  SVLELCGSKKALSE-GQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMP 141

Query: 91  YRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQ 150
           ++   +WN++I  +  NG  + SLE++REM + G  L A     I+  C  + +   G +
Sbjct: 142 HKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYGAE 201

Query: 151 IHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE-VSWTAMISGCIDS 209
           +H L I +G   + VFV+ +++ +Y+KC+    A ++F++M  + + VSW +MIS    +
Sbjct: 202 VHGLAIKEGYVSI-VFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSN 260

Query: 210 QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS 269
                 + LF  MQ+  + P   T    L AC +   ++ G  IH       +  +  ++
Sbjct: 261 GQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVA 320

Query: 270 AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
            AL+ MY    +    A I +      D + W+S++ G+ Q+G   EA++ +  MR    
Sbjct: 321 NALIAMYARFGKMGEAANIFYNMDDW-DTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQ 379

Query: 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
           +P+ V +++I+++  R     HG+ +H Y MK GL+ D+ +GN+L++MY+K  S+     
Sbjct: 380 KPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDC 439

Query: 390 IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL 449
           IF++M  +D VSWTT+I+G+  +G    AL+LF E+Q  G++ D + + +IL AC+   L
Sbjct: 440 IFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKL 499

Query: 450 VKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLV 509
           +   + + + ++++    L +++    VD+ G+ G ++ A ++   +  K      +S++
Sbjct: 500 ISSVKEIHSYIIRKGLSDLVLQN--GIVDVYGECGNVDYAARMFELIEFKDVVS-WTSMI 556

Query: 510 SACRIHGRL 518
           S C +H  L
Sbjct: 557 S-CYVHNGL 564



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 104/320 (32%), Positives = 181/320 (56%), Gaps = 2/320 (0%)

Query: 130 ELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
           E  + ++ LC     L  G+Q+HA +I   +   SVF+ST L+ +Y KC   + A ++F+
Sbjct: 79  EAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFD 138

Query: 190 QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
            M  +   +W AMI   + +      ++L+R M+  G+     T   +L AC  L+D R 
Sbjct: 139 GMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRY 198

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK-DVVIWSSIIRGY 308
           G  +HG A   G+     ++ +++ MY +C + L+ AR +F+R   K DVV W+S+I  Y
Sbjct: 199 GAEVHGLAIKEGYVSIVFVANSIVGMYTKCND-LNGARQLFDRMPEKEDVVSWNSMISAY 257

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
           S +G   EA++LF  M+   + PN+ T +A L +C   SF+  G+ +H  ++K+    +V
Sbjct: 258 SSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINV 317

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
            + NAL+ MY++ G +  +  IF  M   D +SW +++SG+  +G   EALQ + EM+++
Sbjct: 318 FVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDA 377

Query: 429 GVEPDAITVLAILSACNHAG 448
           G +PD + V++I++A   +G
Sbjct: 378 GQKPDLVAVISIIAASARSG 397


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  341 bits (875), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 195/563 (34%), Positives = 326/563 (57%), Gaps = 8/563 (1%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           E+  + L  NT    + ++AC  +   +  G+ +H T LKS    +  ++N+LI+MYA+F
Sbjct: 308 EMQKASLAPNTYTFVAALQACEDSSFIKQ-GMFIHATVLKSSYYINVFVANALIAMYARF 366

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLA--G 134
            K   A  +F  M   DTISWNS+++ F QNG Y  +L+ + EM   G   K +L+A   
Sbjct: 367 GKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAG--QKPDLVAVIS 424

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           II+  ++ G    G QIHA  + +G  +  + V  +L+D+Y+K         +F++M  +
Sbjct: 425 IIAASARSGNTLNGMQIHAYAMKNG-LDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDK 483

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
           + VSWT +I+G   + ++   ++LFR +Q EG+    + ++ +LLAC+ L+ + + K IH
Sbjct: 484 DVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIH 543

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
            Y    G   D  L   ++ +Y EC    + AR+ FE  + KDVV W+S+I  Y  +G  
Sbjct: 544 SYIIRKGLS-DLVLQNGIVDVYGECGNVDYAARM-FELIEFKDVVSWTSMISCYVHNGLA 601

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
           +EA++LF  M+   +EP+S++L++ILS+    S L  G  +H ++++ G   + S+ + L
Sbjct: 602 NEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTL 661

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           ++MY++CG++  S  +FN +  +D V WT++I+ YG HG G  A+ LF  M++  + PD 
Sbjct: 662 VDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDH 721

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS 494
           I  +A+L AC+H+GL+ E      ++  E ++    EHY C VDLLG++  +E+A + V 
Sbjct: 722 IAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVK 781

Query: 495 TMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLG 554
            M ++P+  +  +L+ AC+IH   E+ E+ A +L+E +PEN  NY L+S V +    W  
Sbjct: 782 GMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYAAERRWKD 841

Query: 555 AEEVWRVMRAKGLSKSYGFSRIE 577
            EEV   M+A GL K+ G S IE
Sbjct: 842 VEEVRMRMKASGLKKNPGCSWIE 864



 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 162/544 (29%), Positives = 295/544 (54%), Gaps = 11/544 (2%)

Query: 10  TLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSL 69
           +L LY+ E+  SG+  +    P ++KAC   +  +  G ++H  A+K G  +   ++NS+
Sbjct: 200 SLELYR-EMRVSGIPLDACTFPCILKACGLLKD-RRCGAEVHGLAIKEGYVSIVFVANSI 257

Query: 70  ISMYAKFSKPESAYQLFDEMPYR-DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           + MY K +    A QLFD MP + D +SWNS+I+ ++ NG  + +L +F EM        
Sbjct: 258 VGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPN 317

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
                  +  C     ++ G  IHA V+   S+ ++VFV+ AL+ +Y++      A  +F
Sbjct: 318 TYTFVAALQACEDSSFIKQGMFIHATVL-KSSYYINVFVANALIAMYARFGKMGEAANIF 376

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
             M   + +SW +M+SG + +  Y   +  +  M+  G KP  V +  ++ A A   +  
Sbjct: 377 YNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTL 436

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
           NG  IH YA   G D D  +  +L+ MY +   ++     IF++   KDVV W++II G+
Sbjct: 437 NGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFC-SMKYMDCIFDKMPDKDVVSWTTIIAGH 495

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
           +Q+G  S A++LF  ++LE I+ + + + +IL +C+    +S    +H YI++ GL+ D+
Sbjct: 496 AQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLS-DL 554

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
            + N ++++Y +CG++  + ++F  +  +D VSWT++IS Y  +G   EAL+LF  M+E+
Sbjct: 555 VLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKET 614

Query: 429 GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIED 488
           GVEPD+I++++ILSA      +K+ + +   +++ K   L     +  VD+  + G +E 
Sbjct: 615 GVEPDSISLVSILSAAASLSALKKGKEIHGFLIR-KGFVLEGSLASTLVDMYARCGTLEK 673

Query: 489 ACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE--PENAANYTLLSMVC 546
           +  V + +  K    + +S+++A  +HG    A  L  ++ +    P++ A   +L   C
Sbjct: 674 SRNVFNFIRNKDLV-LWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVL-YAC 731

Query: 547 SESG 550
           S SG
Sbjct: 732 SHSG 735



 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 139/489 (28%), Positives = 259/489 (52%), Gaps = 9/489 (1%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPV-ISNSLISMYAKFSKPESAYQLFDEMP 90
           SV++ C   +     G Q+H   + S +  + V +S  L+ MY K      A +LFD MP
Sbjct: 119 SVLELCGSKKALSE-GQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMP 177

Query: 91  YRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQ 150
           ++   +WN++I  +  NG  + SLE++REM + G  L A     I+  C  + +   G +
Sbjct: 178 HKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCGAE 237

Query: 151 IHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE-VSWTAMISGCIDS 209
           +H L I +G   + VFV+ +++ +Y+KC+    A ++F++M  + + VSW +MIS    +
Sbjct: 238 VHGLAIKEGYVSI-VFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSN 296

Query: 210 QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS 269
                 + LF  MQ+  + P   T    L AC +   ++ G  IH       +  +  ++
Sbjct: 297 GQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVA 356

Query: 270 AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
            AL+ MY    +    A I +      D + W+S++ G+ Q+G   EA++ +  MR    
Sbjct: 357 NALIAMYARFGKMGEAANIFYNMDDW-DTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQ 415

Query: 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
           +P+ V +++I+++  R     +G+ +H Y MK GL+ D+ +GN+L++MY+K  S+     
Sbjct: 416 KPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDC 475

Query: 390 IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL 449
           IF++M  +D VSWTT+I+G+  +G    AL+LF E+Q  G++ D + + +IL AC+   L
Sbjct: 476 IFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKL 535

Query: 450 VKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLV 509
           +   + + + ++++    L +++    VD+ G+ G ++ A ++   +  K      +S++
Sbjct: 536 ISSVKEIHSYIIRKGLSDLVLQN--GIVDVYGECGNVDYAARMFELIEFKDVVS-WTSMI 592

Query: 510 SACRIHGRL 518
           S C +H  L
Sbjct: 593 S-CYVHNGL 600



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 104/320 (32%), Positives = 181/320 (56%), Gaps = 2/320 (0%)

Query: 130 ELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
           E  + ++ LC     L  G+Q+HA +I   +   SVF+ST L+ +Y KC   + A ++F+
Sbjct: 115 EAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFD 174

Query: 190 QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
            M  +   +W AMI   + +      ++L+R M+  G+     T   +L AC  L+D R 
Sbjct: 175 GMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRC 234

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK-DVVIWSSIIRGY 308
           G  +HG A   G+     ++ +++ MY +C + L+ AR +F+R   K DVV W+S+I  Y
Sbjct: 235 GAEVHGLAIKEGYVSIVFVANSIVGMYTKCND-LNGARQLFDRMPEKEDVVSWNSMISAY 293

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
           S +G   EA++LF  M+   + PN+ T +A L +C   SF+  G+ +H  ++K+    +V
Sbjct: 294 SSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINV 353

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
            + NAL+ MY++ G +  +  IF  M   D +SW +++SG+  +G   EALQ + EM+++
Sbjct: 354 FVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDA 413

Query: 429 GVEPDAITVLAILSACNHAG 448
           G +PD + V++I++A   +G
Sbjct: 414 GQKPDLVAVISIIAASARSG 433


>gi|115475988|ref|NP_001061590.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|38423978|dbj|BAD01706.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|38637396|dbj|BAD03655.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|113623559|dbj|BAF23504.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|215686971|dbj|BAG90841.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 819

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 185/556 (33%), Positives = 307/556 (55%), Gaps = 3/556 (0%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G+  +  +L S + AC+ A      G Q+H  A +S ++ D  + N LI +Y K S+  +
Sbjct: 216 GVRPDRFVLASAVSACS-ALGFLEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSA 274

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A +LFD M YR+ +SW ++I+ + QN F   ++ MF  M   G+         I++ C  
Sbjct: 275 ARKLFDCMEYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGS 334

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
           +  +  GRQIHA VI     E   +V  AL+D+Y+KC H   A  VF+ +   + +S+ A
Sbjct: 335 LAAIWQGRQIHAHVI-KADLEADEYVKNALIDMYAKCEHLTEARAVFDALAEDDAISYNA 393

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           MI G   +++    +++F+ M+   ++P+ +T   +L   +    +   K IHG     G
Sbjct: 394 MIEGYSKNRDLAEAVNIFQRMRFFSLRPSLLTFVSLLGVSSSQLAIELSKQIHGLIIKSG 453

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
              D + ++AL+ +Y +C+  ++ A+ +F     KD+VIW+S+I G++Q+    EA+KLF
Sbjct: 454 TSLDLYAASALIDVYSKCS-LVNDAKTVFNMLHYKDMVIWNSMIFGHAQNEQGEEAIKLF 512

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
           +++ L  + PN  T +A+++  +  + + HG   H +I+KAG++ D  + NAL++MY+KC
Sbjct: 513 NQLLLSGMAPNEFTFVALVTVASTLASMFHGQQFHAWIIKAGVDNDPHVSNALIDMYAKC 572

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
           G I     +F      D + W ++I+ Y  HG+ EEALQ+F  M E+ VEP+ +T + +L
Sbjct: 573 GFIKEGRMLFESTCGEDVICWNSMITTYAQHGHAEEALQVFRLMGEAEVEPNYVTFVGVL 632

Query: 442 SACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPS 501
           SAC HAG V E    FN++     I   IEHYA  V+L G+SGK+  A + +  MP+KP+
Sbjct: 633 SACAHAGFVGEGLNHFNSMKSNYDIEPGIEHYASVVNLFGRSGKLHAAKEFIERMPIKPA 692

Query: 502 TRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRV 561
             +  SL+SAC + G  E+    A   + A+P ++  Y LLS + +  G W     + + 
Sbjct: 693 AAVWRSLLSACHLFGNAEIGRYAAEMALLADPTDSGPYVLLSNIYASKGLWADVHNLRQQ 752

Query: 562 MRAKGLSKSYGFSRIE 577
           M + G  K  G S IE
Sbjct: 753 MDSSGTVKETGCSWIE 768



 Score =  238 bits (607), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 156/537 (29%), Positives = 274/537 (51%), Gaps = 28/537 (5%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           N  +L SV++AC  ++     G Q+H  A+K   DA+  +  +LI++YAK    + A  +
Sbjct: 119 NEFLLASVLRACTQSKA-VSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCMDEAMLV 177

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL 145
           F  +P R  ++WN++I  + Q G    +LE+F  M + G      +LA  +S CS +G L
Sbjct: 178 FHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGIEGVRPDRFVLASAVSACSALGFL 237

Query: 146 ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISG 205
           E GRQIH       + E    V   L+DLY KC     A ++F+ M  RN VSWT MISG
Sbjct: 238 EGGRQIHGYAYRSAT-ETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVSWTTMISG 296

Query: 206 CIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFD 265
            + +      I +F  M + G +P     T +L +C  L  +  G+ IH +      + D
Sbjct: 297 YMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQGRQIHAHVIKADLEAD 356

Query: 266 HHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR 325
            ++  AL+ MY +C E L  AR +F+     D + ++++I GYS++ DL+EA+ +F RMR
Sbjct: 357 EYVKNALIDMYAKC-EHLTEARAVFDALAEDDAISYNAMIEGYSKNRDLAEAVNIFQRMR 415

Query: 326 LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSIT 385
              + P+ +T +++L   + Q  +     +H  I+K+G + D+   +AL+++YSKC  + 
Sbjct: 416 FFSLRPSLLTFVSLLGVSSSQLAIELSKQIHGLIIKSGTSLDLYAASALIDVYSKCSLVN 475

Query: 386 SSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
            +  +FN +  +D V W ++I G+  +  GEEA++LF ++  SG+ P+  T +A+++  +
Sbjct: 476 DAKTVFNMLHYKDMVIWNSMIFGHAQNEQGEEAIKLFNQLLLSGMAPNEFTFVALVTVAS 535

Query: 446 -----------HAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS 494
                      HA ++K        V  +  ++ A+      +D+  K G I++  +++ 
Sbjct: 536 TLASMFHGQQFHAWIIKAG------VDNDPHVSNAL------IDMYAKCGFIKEG-RMLF 582

Query: 495 TMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPE-NAANYTLLSMVCSESG 550
                      +S+++    HG  E A  +   + EAE E N   +  +   C+ +G
Sbjct: 583 ESTCGEDVICWNSMITTYAQHGHAEEALQVFRLMGEAEVEPNYVTFVGVLSACAHAG 639



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 130/451 (28%), Positives = 236/451 (52%), Gaps = 4/451 (0%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           +H  A  +G   D  ++N L+  Y+   +   A  LFD MP+R+ +SW S+I+ +TQ+G 
Sbjct: 40  IHARATVAGRLDDLFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQHGR 99

Query: 110 YVRSLEMFREMYLCGFVLKAE-LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
              ++ +F         +  E LLA ++  C+Q   + LG Q+H  + V    + +V+V 
Sbjct: 100 DDCAISLFVAFQKASCEVPNEFLLASVLRACTQSKAVSLGEQVHG-IAVKLDLDANVYVG 158

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
           TAL++LY+K      A+ VF  + +R  V+W  +I+G          ++LF  M  EGV+
Sbjct: 159 TALINLYAKLGCMDEAMLVFHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGIEGVR 218

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
           P R  L   + AC+ L  L  G+ IHGYAY    + D  +   L+ +YC+C+  L  AR 
Sbjct: 219 PDRFVLASAVSACSALGFLEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSR-LSAARK 277

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
           +F+  + +++V W+++I GY Q+   +EA+ +F  M     +P+     +IL+SC   + 
Sbjct: 278 LFDCMEYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAA 337

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
           +  G  +H +++KA L  D  + NAL++MY+KC  +T +  +F+ +A  D +S+  +I G
Sbjct: 338 IWQGRQIHAHVIKADLEADEYVKNALIDMYAKCEHLTEARAVFDALAEDDAISYNAMIEG 397

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468
           Y  +    EA+ +F  M+   + P  +T +++L   + + L  E     + ++ +   +L
Sbjct: 398 YSKNRDLAEAVNIFQRMRFFSLRPSLLTFVSLLGVSS-SQLAIELSKQIHGLIIKSGTSL 456

Query: 469 AIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
            +   +  +D+  K   + DA  V + +  K
Sbjct: 457 DLYAASALIDVYSKCSLVNDAKTVFNMLHYK 487



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 102/335 (30%), Positives = 175/335 (52%), Gaps = 6/335 (1%)

Query: 132 LAGIISLCSQIGELELGR---QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
           LA ++  C   G   L R    IHA   V G  +  +F++  LL  YS       A  +F
Sbjct: 18  LARVLLSCLPTGGDRLRRLNPAIHARATVAGRLD-DLFLTNLLLRGYSNLGRLRDARHLF 76

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK-PTRVTLTIVLLACAELRDL 247
           ++M  RN VSW ++IS        D  I LF A Q+   + P    L  VL AC + + +
Sbjct: 77  DRMPHRNLVSWGSVISMYTQHGRDDCAISLFVAFQKASCEVPNEFLLASVLRACTQSKAV 136

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
             G+ +HG A     D + ++  AL+++Y +    +  A ++F    V+  V W+++I G
Sbjct: 137 SLGEQVHGIAVKLDLDANVYVGTALINLYAKLG-CMDEAMLVFHALPVRTPVTWNTVITG 195

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
           Y+Q G    A++LF RM +E + P+   L + +S+C+   FL  G  +H Y  ++    D
Sbjct: 196 YAQIGCGGVALELFDRMGIEGVRPDRFVLASAVSACSALGFLEGGRQIHGYAYRSATETD 255

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
            S+ N L+++Y KC  ++++ ++F+ M  R+ VSWTT+ISGY  + +  EA+ +F  M +
Sbjct: 256 TSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQ 315

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462
           +G +PD     +IL++C     + +   +  +V+K
Sbjct: 316 AGWQPDGFACTSILNSCGSLAAIWQGRQIHAHVIK 350


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 190/573 (33%), Positives = 318/573 (55%), Gaps = 12/573 (2%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           ++ +HL  Q +   G+  N     +V+ A A  ++    G+Q+H   +K+G +    + N
Sbjct: 187 DEVIHLINQ-MQMEGVNPNGFTFATVLGALA-DESIIEGGVQVHAMIVKNGFEFTTFVCN 244

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +LI MY K      A  +FD M  RD+++WN +I  +   GFY+   +MF  M L G  L
Sbjct: 245 ALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKL 304

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
              +    + LCSQ  EL   +Q+H  V+ +G +E +  + TAL+  YSKC     A ++
Sbjct: 305 SRTVFCTALKLCSQQRELNFTKQLHCGVVKNG-YEFAQDIRTALMVTYSKCSSVDEAFKL 363

Query: 188 FEQM-VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA-CAELR 245
           F       N V+WTAMI G + + N +  +DLF  M REGV+P   T + VL    + L 
Sbjct: 364 FSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLL 423

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
              + + I  Y     ++    ++ AL+  Y +    +  AR+ F     KD+V WS+++
Sbjct: 424 SQLHAQIIKAY-----YEKVPSVATALLDAYVKTGNVVESARV-FYSIPAKDIVAWSAML 477

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQS-FLSHGLGVHCYIMKAGL 364
            G +Q+ D  +AM++F ++  E ++PN  T  +++++C+  +  + HG  +H   +K+G 
Sbjct: 478 TGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGK 537

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
           +  + + +AL+ MYSK G+I S+ ++F     RD VSW ++I+GYG HG  ++AL++F  
Sbjct: 538 SNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQI 597

Query: 425 MQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSG 484
           MQ  G+  D +T + +L+AC HAGLV+E E  FN ++K+  I   IEHY+C VDL  ++G
Sbjct: 598 MQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKIEHYSCMVDLYSRAG 657

Query: 485 KIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSM 544
             + A  +++ MP   S  I  +L++ACR+H  LE+ ++ A +L+  +P +A  Y LLS 
Sbjct: 658 MFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSN 717

Query: 545 VCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           + + +GNW     V ++M  + + K  G S IE
Sbjct: 718 IHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIE 750



 Score =  228 bits (582), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 155/560 (27%), Positives = 278/560 (49%), Gaps = 19/560 (3%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           + LHL+K +LH SGL  +   L   +K C      Q  G Q+HC +LKSG   D  +  S
Sbjct: 87  EALHLFK-DLHSSGLGVDGLTLSCALKVCG-VLFDQVVGRQVHCQSLKSGFLEDVSVGTS 144

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           L+ MY K    E    +FDEM  ++ +SW S+++ + +NG     + +  +M + G    
Sbjct: 145 LVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPN 204

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
               A ++   +    +E G Q+HA+++ +G FE + FV  AL+ +Y K      A  VF
Sbjct: 205 GFTFATVLGALADESIIEGGVQVHAMIVKNG-FEFTTFVCNALICMYLKSEMVGDAEAVF 263

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
           + MV+R+ V+W  MI G      Y  G  +F  M+  GVK +R      L  C++ R+L 
Sbjct: 264 DSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELN 323

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
             K +H      G++F   +  ALM  Y +C+      ++        +VV W+++I G+
Sbjct: 324 FTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGF 383

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
            Q+ +  +A+ LF +M  E + PN  T   +L+     S LS    +H  I+KA      
Sbjct: 384 VQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLAG-KPSSLLSQ---LHAQIIKAYYEKVP 439

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
           S+  AL++ Y K G++  S ++F  + A+D V+W+ +++G       E+A+++F+++ + 
Sbjct: 440 SVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKE 499

Query: 429 GVEPDAITVLAILSAC-NHAGLVKEAETLFNNVMKE-KKIALAIEHYACYVDLLGKSGKI 486
           GV+P+  T  ++++AC + A  V+  + +    +K  K  AL +   +  + +  K G I
Sbjct: 500 GVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVS--SALLTMYSKKGNI 557

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGR----LEVAEMLAHQLIEAEPENAANYTLL 542
           E A KV +    +      +S+++    HG     LEV +++ +Q +   P +   +  +
Sbjct: 558 ESAEKVFTRQEERDIVS-WNSMITGYGQHGDAKKALEVFQIMQNQGL---PLDDVTFIGV 613

Query: 543 SMVCSESGNWLGAEEVWRVM 562
              C+ +G     E+ + +M
Sbjct: 614 LTACTHAGLVEEGEKYFNIM 633



 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 136/474 (28%), Positives = 232/474 (48%), Gaps = 8/474 (1%)

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
           S+P  A+QLFDE P +D   +N ++  F++N     +L +F++++  G  +    L+  +
Sbjct: 52  SRPRYAHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCAL 111

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
            +C  + +  +GRQ+H   +  G  E  V V T+L+D+Y K   +     +F++M I+N 
Sbjct: 112 KVCGVLFDQVVGRQVHCQSLKSGFLE-DVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNV 170

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           VSWT+++SG   +   D  I L   MQ EGV P   T   VL A A+   +  G  +H  
Sbjct: 171 VSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAM 230

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
               GF+F   +  AL+ MY + +E +  A  +F+   V+D V W+ +I GY+  G   E
Sbjct: 231 IVKNGFEFTTFVCNALICMYLK-SEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLE 289

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
             ++F RMRL  ++ +       L  C++Q  L+    +HC ++K G  F   I  ALM 
Sbjct: 290 GFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMV 349

Query: 377 MYSKCGSITSSHQIFNEM-AARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
            YSKC S+  + ++F+   AA + V+WT +I G+  +   E+A+ LF +M   GV P+  
Sbjct: 350 TYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHF 409

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           T   +L A   + L+ +          EK  ++A      YV    K+G + ++ +V  +
Sbjct: 410 TYSTVL-AGKPSSLLSQLHAQIIKAYYEKVPSVATALLDAYV----KTGNVVESARVFYS 464

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSES 549
           +P K      + L    +     +  E+    + E    N   ++ +   CS S
Sbjct: 465 IPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSS 518


>gi|15232006|ref|NP_187516.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207468|sp|Q9SS83.1|PP220_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g09040, mitochondrial; Flags: Precursor
 gi|5923669|gb|AAD56320.1|AC009326_7 hypothetical protein [Arabidopsis thaliana]
 gi|332641192|gb|AEE74713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1028

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 188/565 (33%), Positives = 304/565 (53%), Gaps = 5/565 (0%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           ++  SG   +     S++  CA A      G Q H   +K     +  + N+L+ MYAK 
Sbjct: 418 DMKSSGYNIDDFTFTSLLSTCA-ASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKC 476

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
              E A Q+F+ M  RD ++WN+II  + Q+     + ++F+ M LCG V     LA  +
Sbjct: 477 GALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTL 536

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
             C+ +  L  G+Q+H L +  G  +  +   ++L+D+YSKC     A +VF  +   + 
Sbjct: 537 KACTHVHGLYQGKQVHCLSVKCG-LDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSV 595

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           VS  A+I+G     N +  + LF+ M   GV P+ +T   ++ AC +   L  G   HG 
Sbjct: 596 VSMNALIAG-YSQNNLEEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQ 654

Query: 257 AYCCGFDFD-HHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
               GF  +  +L  +L+ MY           +  E +  K +V+W+ ++ G+SQ+G   
Sbjct: 655 ITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYE 714

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           EA+K +  MR + + P+  T + +L  C+  S L  G  +H  I     + D    N L+
Sbjct: 715 EALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLI 774

Query: 376 NMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           +MY+KCG +  S Q+F+EM  R + VSW +LI+GY  +GY E+AL++F  M++S + PD 
Sbjct: 775 DMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDE 834

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS 494
           IT L +L+AC+HAG V +   +F  ++ +  I   ++H AC VDLLG+ G +++A   + 
Sbjct: 835 ITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIE 894

Query: 495 TMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLG 554
              +KP  R+ SSL+ ACRIHG     E+ A +LIE EP+N++ Y LLS + +  G W  
Sbjct: 895 AQNLKPDARLWSSLLGACRIHGDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGCWEK 954

Query: 555 AEEVWRVMRAKGLSKSYGFSRIENE 579
           A  + +VMR +G+ K  G+S I+ E
Sbjct: 955 ANALRKVMRDRGVKKVPGYSWIDVE 979



 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 148/551 (26%), Positives = 279/551 (50%), Gaps = 14/551 (2%)

Query: 18  LHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFS 77
           +  S + S  + L SV+ A      +   GL +H  A+K G  ++  + +SL+SMY+K  
Sbjct: 318 MRKSSVKSTRSTLGSVLSAIGIV-ANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCE 376

Query: 78  KPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS 137
           K E+A ++F+ +  ++ + WN++I  +  NG   + +E+F +M   G+ +       ++S
Sbjct: 377 KMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLS 436

Query: 138 LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197
            C+   +LE+G Q H+ +I+      ++FV  AL+D+Y+KC     A ++FE+M  R+ V
Sbjct: 437 TCAASHDLEMGSQFHS-IIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNV 495

Query: 198 SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
           +W  +I   +  +N     DLF+ M   G+      L   L AC  +  L  GK +H  +
Sbjct: 496 TWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLS 555

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
             CG D D H  ++L+ MY +C   +  AR +F       VV  +++I GYSQ+ +L EA
Sbjct: 556 VKCGLDRDLHTGSSLIDMYSKCG-IIKDARKVFSSLPEWSVVSMNALIAGYSQN-NLEEA 613

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS-IGNALMN 376
           + LF  M    + P+ +T   I+ +C +   L+ G   H  I K G + +   +G +L+ 
Sbjct: 614 VVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLG 673

Query: 377 MYSKCGSITSSHQIFNEMAA-RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           MY     +T +  +F+E+++ +  V WT ++SG+  +G+ EEAL+ + EM+  GV PD  
Sbjct: 674 MYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQA 733

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYA--CYVDLLGKSGKIEDACKVV 493
           T + +L  C+    ++E   + + +     +A  ++       +D+  K G ++ + +V 
Sbjct: 734 TFVTVLRVCSVLSSLREGRAIHSLIF---HLAHDLDELTSNTLIDMYAKCGDMKGSSQVF 790

Query: 494 STMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE--PENAANYTLLSMVCSESGN 551
             M  + +    +SL++    +G  E A  +   + ++   P+      +L+  CS +G 
Sbjct: 791 DEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLT-ACSHAGK 849

Query: 552 WLGAEEVWRVM 562
                +++ +M
Sbjct: 850 VSDGRKIFEMM 860



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 153/495 (30%), Positives = 234/495 (47%), Gaps = 12/495 (2%)

Query: 58  GSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMF 117
           G   D +   ++I+ Y +  K + A  LF EM   D ++WN +I+   + G    ++E F
Sbjct: 256 GHRPDHLAFVTVINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYF 315

Query: 118 REMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSK 177
             M           L  ++S    +  L+LG  +HA  I  G    +++V ++L+ +YSK
Sbjct: 316 FNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLG-LASNIYVGSSLVSMYSK 374

Query: 178 CHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIV 237
           C     A +VFE +  +N+V W AMI G   +      ++LF  M+  G      T T +
Sbjct: 375 CEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSL 434

Query: 238 LLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKD 297
           L  CA   DL  G   H          +  +  AL+ MY +C  AL  AR IFER   +D
Sbjct: 435 LSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCG-ALEDARQIFERMCDRD 493

Query: 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHC 357
            V W++II  Y Q  + SEA  LF RM L  I  +   L + L +CT    L  G  VHC
Sbjct: 494 NVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHC 553

Query: 358 YIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEE 417
             +K GL+ D+  G++L++MYSKCG I  + ++F+ +     VS   LI+GY  +   EE
Sbjct: 554 LSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQNNL-EE 612

Query: 418 ALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYV 477
           A+ LF EM   GV P  IT   I+ AC H        T F+  + ++  +   E+    +
Sbjct: 613 AVVLFQEMLTRGVNPSEITFATIVEAC-HKPESLTLGTQFHGQITKRGFSSEGEYLG--I 669

Query: 478 DLLG---KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE-- 532
            LLG    S  + +AC + S +    S  + + ++S    +G  E A     ++      
Sbjct: 670 SLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVL 729

Query: 533 PENAANYTLLSMVCS 547
           P+ A   T+L  VCS
Sbjct: 730 PDQATFVTVLR-VCS 743



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 131/483 (27%), Positives = 224/483 (46%), Gaps = 45/483 (9%)

Query: 18  LHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFS 77
           L  + ++ N      V+  CA  +T+  FG Q+HC+ +K G + +     +L+ MYAK  
Sbjct: 151 LFENQIFPNKFTFSIVLSTCA-RETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCD 209

Query: 78  KPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS 137
           +   A ++F+ +   +T+ W  + + + + G    ++ +F  M   G          +I+
Sbjct: 210 RISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTVIN 269

Query: 138 LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197
              ++G+L+  R +                                    F +M   + V
Sbjct: 270 TYIRLGKLKDARLL------------------------------------FGEMSSPDVV 293

Query: 198 SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
           +W  MISG          I+ F  M++  VK TR TL  VL A   + +L  G  +H  A
Sbjct: 294 AWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEA 353

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
              G   + ++ ++L+ MY +C E +  A  +FE  + K+ V W+++IRGY+ +G+  + 
Sbjct: 354 IKLGLASNIYVGSSLVSMYSKC-EKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKV 412

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
           M+LF  M+      +  T  ++LS+C     L  G   H  I+K  L  ++ +GNAL++M
Sbjct: 413 MELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDM 472

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           Y+KCG++  + QIF  M  RD V+W T+I  Y       EA  LF  M   G+  D   +
Sbjct: 473 YAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACL 532

Query: 438 LAILSACNHA-GLVKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDACKVVS 494
            + L AC H  GL +  +    +V    K  L  + +  +  +D+  K G I+DA KV S
Sbjct: 533 ASTLKACTHVHGLYQGKQVHCLSV----KCGLDRDLHTGSSLIDMYSKCGIIKDARKVFS 588

Query: 495 TMP 497
           ++P
Sbjct: 589 SLP 591



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 120/450 (26%), Positives = 221/450 (49%), Gaps = 39/450 (8%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G  +H  +L  G D++  + N+++ +YAK ++   A + FD +  +D  +WNS+++ ++ 
Sbjct: 79  GKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFDFLE-KDVTAWNSMLSMYSS 137

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
            G   + L  F  ++           + ++S C++   +E GRQIH  +I  G  E + +
Sbjct: 138 IGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMG-LERNSY 196

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
              AL+D+Y+KC     A RVFE +V  N V WT + SG + +   +  + +F  M+ EG
Sbjct: 197 CGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEG 256

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
            +P  +    V+     L  L++                                    A
Sbjct: 257 HRPDHLAFVTVINTYIRLGKLKD------------------------------------A 280

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
           R++F      DVV W+ +I G+ + G  + A++ F  MR   ++    TL ++LS+    
Sbjct: 281 RLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIV 340

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
           + L  GL VH   +K GL  ++ +G++L++MYSKC  + ++ ++F  +  ++ V W  +I
Sbjct: 341 ANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMI 400

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
            GY  +G   + ++LF++M+ SG   D  T  ++LS C  A    E  + F++++ +KK+
Sbjct: 401 RGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCA-ASHDLEMGSQFHSIIIKKKL 459

Query: 467 ALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
           A  +      VD+  K G +EDA ++   M
Sbjct: 460 AKNLFVGNALVDMYAKCGALEDARQIFERM 489



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 118/221 (53%), Gaps = 2/221 (0%)

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           LR GKA+H  +   G D +  L  A++ +Y +C +  + A   F+  + KDV  W+S++ 
Sbjct: 76  LRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSY-AEKQFDFLE-KDVTAWNSMLS 133

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
            YS  G   + ++ F  +   +I PN  T   +LS+C R++ +  G  +HC ++K GL  
Sbjct: 134 MYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLER 193

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           +   G AL++MY+KC  I+ + ++F  +   + V WT L SGY   G  EEA+ +F  M+
Sbjct: 194 NSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMR 253

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIA 467
           + G  PD +  + +++     G +K+A  LF  +     +A
Sbjct: 254 DEGHRPDHLAFVTVINTYIRLGKLKDARLLFGEMSSPDVVA 294



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 160/362 (44%), Gaps = 53/362 (14%)

Query: 145 LELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMIS 204
           L +G+ +H+  ++ G  +    +  A++DLY+KC     A + F+  + ++  +W +M+S
Sbjct: 76  LRIGKAVHSKSLILG-IDSEGRLGNAIVDLYAKCAQVSYAEKQFD-FLEKDVTAWNSMLS 133

Query: 205 GCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDF 264
                      +  F ++    + P + T +IVL  CA   ++  G+ IH      G + 
Sbjct: 134 MYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLER 193

Query: 265 DHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM 324
           + +   AL+ MY +C + +  AR +FE     + V W+ +  GY ++G   EA+ +F RM
Sbjct: 194 NSYCGGALVDMYAKC-DRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERM 252

Query: 325 RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSI 384
           R E   P+ +  + ++                                   N Y + G +
Sbjct: 253 RDEGHRPDHLAFVTVI-----------------------------------NTYIRLGKL 277

Query: 385 TSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
             +  +F EM++ D V+W  +ISG+G  G    A++ F  M++S V+    T+ ++LSA 
Sbjct: 278 KDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAI 337

Query: 445 N-----HAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDACKVVSTMP 497
                   GLV  AE +        K+ LA   Y  +  V +  K  K+E A KV   + 
Sbjct: 338 GIVANLDLGLVVHAEAI--------KLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALE 389

Query: 498 MK 499
            K
Sbjct: 390 EK 391



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 105/212 (49%), Gaps = 8/212 (3%)

Query: 1   MVSKH----FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALK 56
           M+S H    FYE+ L  YK+  H  G+  + A   +V++ C+   + +  G  +H     
Sbjct: 703 MMSGHSQNGFYEEALKFYKEMRH-DGVLPDQATFVTVLRVCSVLSSLRE-GRAIHSLIFH 760

Query: 57  SGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYR-DTISWNSIINCFTQNGFYVRSLE 115
              D D + SN+LI MYAK    + + Q+FDEM  R + +SWNS+IN + +NG+   +L+
Sbjct: 761 LAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALK 820

Query: 116 MFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLY 175
           +F  M     +       G+++ CS  G++  GR+I  ++I     E  V     ++DL 
Sbjct: 821 IFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLL 880

Query: 176 SKCHHWLIALRVFEQMVIRNEVS-WTAMISGC 206
            +  +   A    E   ++ +   W++++  C
Sbjct: 881 GRWGYLQEADDFIEAQNLKPDARLWSSLLGAC 912


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 189/569 (33%), Positives = 332/569 (58%), Gaps = 5/569 (0%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           + L L++ E+  +G+ +NT  L + ++AC    + +  G+++H   LKS    D  ++N+
Sbjct: 95  EALGLFR-EMQKAGVGANTYTLVAALQACE-DSSFKKLGMEIHAAILKSNQVLDVYVANA 152

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           L++M+ +F K   A ++FDE+  +D I+WNS+I  FTQNG Y  +L+ F  +        
Sbjct: 153 LVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPD 212

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
              L  I++   ++G L  G++IHA  + +   + ++ +   L+D+YSKC     A  VF
Sbjct: 213 EVSLISILAASGRLGYLLNGKEIHAYAMKNW-LDSNLRIGNTLIDMYSKCCCVAYAGLVF 271

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
           ++M+ ++ +SWT +I+    +  +   + L R +Q +G+    + +   LLAC+ LR L 
Sbjct: 272 DKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLS 331

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
           + K +HGY    G   D  +   ++ +Y +C    +  R+ FE  K KDVV W+S+I  Y
Sbjct: 332 HAKEVHGYTLKRGLS-DLMMQNMIIDVYADCGNINYATRM-FESIKCKDVVSWTSMISCY 389

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
             +G  +EA+ +F  M+   +EP+S+TL++ILS+    S L+ G  +H +I + G   + 
Sbjct: 390 VHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFMLEG 449

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
           S  N+L++MY+ CGS+ +++++F    ++  V WTT+I+ YG HG G+ A++LF  M++ 
Sbjct: 450 STVNSLVDMYACCGSLENAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQ 509

Query: 429 GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIED 488
            + PD IT LA+L AC+H+GL+ E + L   +  + ++    EHYAC VDLLG++  +E+
Sbjct: 510 KLIPDHITFLALLYACSHSGLINEGKRLLETMKCKYQLEPWPEHYACLVDLLGRANHLEE 569

Query: 489 ACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSE 548
           A   V +M ++P+  +  + + ACRIH   ++ E+ A +L++ +P++  +Y L+S V + 
Sbjct: 570 AYHFVKSMQIEPTAEVWCAFLGACRIHSNKKLGEIAAQKLLDLDPDSPGSYVLISNVFAA 629

Query: 549 SGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           SG W   EEV   M+  GL K+ G S IE
Sbjct: 630 SGRWKDVEEVRMRMKGGGLKKNPGCSWIE 658



 Score =  248 bits (634), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 162/532 (30%), Positives = 291/532 (54%), Gaps = 10/532 (1%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G+  ++   P V+KAC   +   H G ++H   +K G D+   ++NSL+SMYAK +    
Sbjct: 5   GVPFDSFTFPCVLKACGVVED-IHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILG 63

Query: 82  AYQLFDEMPYR-DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
           A +LFD M  R D +SWNSII+ ++ NG  + +L +FREM   G       L   +  C 
Sbjct: 64  ARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACE 123

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
                +LG +IHA ++      L V+V+ AL+ ++ +      A R+F+++  ++ ++W 
Sbjct: 124 DSSFKKLGMEIHAAILKSNQV-LDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWN 182

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
           +MI+G   +  Y+  +  F  +Q   +KP  V+L  +L A   L  L NGK IH YA   
Sbjct: 183 SMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKN 242

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
             D +  +   L+ MY +C   +  A ++F++   KD++ W+++I  Y+Q+   +EA+KL
Sbjct: 243 WLDSNLRIGNTLIDMYSKCC-CVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKL 301

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
             +++ + ++ +++ + + L +C+    LSH   VH Y +K GL+ D+ + N ++++Y+ 
Sbjct: 302 LRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLS-DLMMQNMIIDVYAD 360

Query: 381 CGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
           CG+I  + ++F  +  +D VSWT++IS Y  +G   EAL +F  M+E+ VEPD+IT+++I
Sbjct: 361 CGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPDSITLVSI 420

Query: 441 LSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKP 500
           LSA      + + + +   + + K   L        VD+    G +E+A KV      K 
Sbjct: 421 LSAAASLSALNKGKEIHGFIFR-KGFMLEGSTVNSLVDMYACCGSLENAYKVFICTRSK- 478

Query: 501 STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV--CSESG 550
           S  + +++++A  +HGR + A  L   ++E +     + T L+++  CS SG
Sbjct: 479 SLVLWTTMINAYGMHGRGKAAVEL-FSIMEDQKLIPDHITFLALLYACSHSG 529



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 79/144 (54%), Gaps = 1/144 (0%)

Query: 324 MRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS 383
           MR+  +  +S T   +L +C     +  G  +H  I+K G +  V + N+L++MY+KC  
Sbjct: 1   MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCND 60

Query: 384 ITSSHQIFNEMAAR-DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILS 442
           I  + ++F+ M  R D VSW ++IS Y  +G   EAL LF EMQ++GV  +  T++A L 
Sbjct: 61  ILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQ 120

Query: 443 ACNHAGLVKEAETLFNNVMKEKKI 466
           AC  +   K    +   ++K  ++
Sbjct: 121 ACEDSSFKKLGMEIHAAILKSNQV 144


>gi|359481513|ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Vitis vinifera]
          Length = 755

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 199/571 (34%), Positives = 307/571 (53%), Gaps = 6/571 (1%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
             L  Y Q L  SG+  +     S+IKAC+ +      G QLH   LKS   A  +  N+
Sbjct: 147 NALEFYFQMLQ-SGVMPDQFTFGSIIKACS-SLGDIGLGRQLHAHVLKSEFGAHIIAQNA 204

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           LISMY K +    A  +F  M  RD ISW S+I  F+Q G+ + +L  F+EM   G  L 
Sbjct: 205 LISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLP 264

Query: 129 AELLAG-IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
            E + G + S CS + + E GRQ+H + I  G     VF   +L D+Y+KC     A  V
Sbjct: 265 NEFIFGSVFSACSSLLQPEYGRQLHGMSIKFG-LGRDVFAGCSLCDMYAKCGLLSCARVV 323

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F Q+   + V+W A+I+G     +    I  F  M+ +G+ P  +T+  +L AC    +L
Sbjct: 324 FYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSEL 383

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK-DVVIWSSIIR 306
             G  +HGY    G D D  +   L+ MY +C+E L  A   FE  +   D+V W++I+ 
Sbjct: 384 YQGMQVHGYINKMGLDLDVPVCNTLLTMYAKCSE-LRDAIFFFEEMRCNADLVSWNAILT 442

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
              +     E  +L   M + +  P+ +TL  +L +      +  G  VHCY +K GLN 
Sbjct: 443 ACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGLNC 502

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           D S+ N L+++Y+KCGS+ ++H+IF+ M   D VSW++LI GY   GYGEEAL+LF  M+
Sbjct: 503 DTSVTNGLIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILGYAQFGYGEEALKLFKTMR 562

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
              V+P+ +T + +L+AC+H GLV+E   L+  + KE  IA   EH +C VDLL ++G +
Sbjct: 563 RLDVKPNHVTFVGVLTACSHVGLVEEGWKLYGTMEKEFGIAPTREHCSCMVDLLARAGCL 622

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546
            +A   +  M   P   +  +L++AC+ HG ++V +  A  +++ +P N+A + LL  + 
Sbjct: 623 NEAEGFIHQMAFDPDIVVWKTLLAACKTHGNVDVGKRAAENILKIDPSNSAAHVLLCNIY 682

Query: 547 SESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +  GNW     +  +M+ +G+ K  G S IE
Sbjct: 683 ASKGNWEDVARLRSLMKQRGVRKVPGQSWIE 713



 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 166/540 (30%), Positives = 263/540 (48%), Gaps = 27/540 (5%)

Query: 33  VIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYR 92
           +I AC+Y ++ +H G ++H   LKS S  D  + N +++MY K    + A ++FD MP R
Sbjct: 69  LISACSYLRSLEH-GKKIHDHMLKSKSHPDLTLQNHILNMYGKCKSLKDAQKVFDAMPER 127

Query: 93  DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIH 152
           + +SW S+I  ++QNG    +LE + +M   G +        II  CS +G++ LGRQ+H
Sbjct: 128 NVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLH 187

Query: 153 ALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNY 212
           A V+    F   +    AL+ +Y+K +  + AL VF +M  R+ +SW +MI+G       
Sbjct: 188 AHVL-KSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQLGYE 246

Query: 213 DTGIDLFRAMQREGVK-PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAA 271
              +  F+ M  +GV  P       V  AC+ L     G+ +HG +   G   D     +
Sbjct: 247 LEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCS 306

Query: 272 LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP 331
           L  MY +C   L  AR++F +    D+V W++II G++  GD  EA+  FS+MR + + P
Sbjct: 307 LCDMYAKCG-LLSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIP 365

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIF 391
           + +T+ ++L +CT  S L  G+ VH YI K GL+ DV + N L+ MY+KC  +  +   F
Sbjct: 366 DEITVRSLLCACTSPSELYQGMQVHGYINKMGLDLDVPVCNTLLTMYAKCSELRDAIFFF 425

Query: 392 NEMAAR-DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLV 450
            EM    D VSW  +++    H   EE  +L   M  S   PD IT+  +L A       
Sbjct: 426 EEMRCNADLVSWNAILTACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGA------- 478

Query: 451 KEAETLFNNVMKEKKIALAIEHYAC-------YVDLLGKSGKIEDACKVVSTMPMKPSTR 503
             AET+   +  +           C        +DL  K G ++ A K+  +M + P   
Sbjct: 479 -SAETVSIEIGNQVHCYALKTGLNCDTSVTNGLIDLYAKCGSLKTAHKIFDSM-INPDVV 536

Query: 504 ILSSLVSACRIHGRLEVAEMLAHQL--IEAEPENAANYTLLSMVCSESGNWLGAEEVWRV 561
             SSL+      G  E A  L   +  ++ +P N   +  +   CS  G     EE W++
Sbjct: 537 SWSSLILGYAQFGYGEEALKLFKTMRRLDVKP-NHVTFVGVLTACSHVGL---VEEGWKL 592



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 113/401 (28%), Positives = 202/401 (50%), Gaps = 12/401 (2%)

Query: 124 GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
           GF L     A +IS CS +  LE G++IH  ++   S    + +   +L++Y KC     
Sbjct: 58  GFCLTLSTYAYLISACSYLRSLEHGKKIHDHMLKSKSHP-DLTLQNHILNMYGKCKSLKD 116

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
           A +VF+ M  RN VSWT++I+G   +      ++ +  M + GV P + T   ++ AC+ 
Sbjct: 117 AQKVFDAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSS 176

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSA--ALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           L D+  G+ +H  A+    +F  H+ A  AL+ MY + +  +  A  +F R   +D++ W
Sbjct: 177 LGDIGLGRQLH--AHVLKSEFGAHIIAQNALISMYTK-SNLIIDALDVFSRMATRDLISW 233

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIE-PNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
            S+I G+SQ G   EA+  F  M  + +  PN     ++ S+C+      +G  +H   +
Sbjct: 234 GSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSI 293

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
           K GL  DV  G +L +MY+KCG ++ +  +F ++   D V+W  +I+G+ + G  +EA+ 
Sbjct: 294 KFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIA 353

Query: 421 LFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC--YVD 478
            F +M+  G+ PD ITV ++L AC     + +   +   +    K+ L ++   C   + 
Sbjct: 354 FFSQMRHQGLIPDEITVRSLLCACTSPSELYQGMQVHGYI---NKMGLDLDVPVCNTLLT 410

Query: 479 LLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLE 519
           +  K  ++ DA      M         +++++AC  H + E
Sbjct: 411 MYAKCSELRDAIFFFEEMRCNADLVSWNAILTACMRHDQAE 451



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 135/255 (52%), Gaps = 3/255 (1%)

Query: 193 IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE-GVKPTRVTLTIVLLACAELRDLRNGK 251
           +R E S    I+     + ++  I  F  +Q++ G   T  T   ++ AC+ LR L +GK
Sbjct: 24  LRAEQSSNEYITSLCKQKLFNEAIKAFEFLQKKTGFCLTLSTYAYLISACSYLRSLEHGK 83

Query: 252 AIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQS 311
            IH +        D  L   +++MY +C ++L  A+ +F+    ++VV W+S+I GYSQ+
Sbjct: 84  KIHDHMLKSKSHPDLTLQNHILNMYGKC-KSLKDAQKVFDAMPERNVVSWTSVIAGYSQN 142

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
           G    A++ + +M    + P+  T  +I+ +C+    +  G  +H +++K+     +   
Sbjct: 143 GQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQ 202

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
           NAL++MY+K   I  +  +F+ MA RD +SW ++I+G+   GY  EAL  F EM   GV 
Sbjct: 203 NALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVY 262

Query: 432 -PDAITVLAILSACN 445
            P+     ++ SAC+
Sbjct: 263 LPNEFIFGSVFSACS 277



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 123/230 (53%), Gaps = 15/230 (6%)

Query: 281 EALHPARIIFERTKVKDVVIWSSIIRGYSQSGD----------LSEAMKLFSRMRLERIE 330
           +AL P ++ F    VK+ V+  S +R    S +           +EA+K F  ++ +   
Sbjct: 3   KALRP-QVGFATNNVKETVL--SKLRAEQSSNEYITSLCKQKLFNEAIKAFEFLQKKTGF 59

Query: 331 PNSVTLLA-ILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
             +++  A ++S+C+    L HG  +H +++K+  + D+++ N ++NMY KC S+  + +
Sbjct: 60  CLTLSTYAYLISACSYLRSLEHGKKIHDHMLKSKSHPDLTLQNHILNMYGKCKSLKDAQK 119

Query: 390 IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL 449
           +F+ M  R+ VSWT++I+GY  +G G  AL+ + +M +SGV PD  T  +I+ AC+  G 
Sbjct: 120 VFDAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGD 179

Query: 450 VKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           +     L  +V+K +  A  I   A  + +  KS  I DA  V S M  +
Sbjct: 180 IGLGRQLHAHVLKSEFGAHIIAQNA-LISMYTKSNLIIDALDVFSRMATR 228


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 182/577 (31%), Positives = 315/577 (54%), Gaps = 4/577 (0%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           +  + F +  L L+ + +    L  +   + S++ ACA +      G QLH   +K+G  
Sbjct: 289 LAQQGFSDGALELFTK-MKRDYLKPDCVTVASLLSACA-SNGALCKGEQLHSYVIKAGIS 346

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
           +D ++  +L+ +Y   S  ++A+++F      + + WN ++  F +      S  +FR+M
Sbjct: 347 SDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQM 406

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
            + G +        I+  C+ +G L+LG QIH  VI  G F+ +V+V + L+D+Y+K   
Sbjct: 407 QIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTG-FQFNVYVCSVLIDMYAKHGK 465

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
              A  +   +   + VSWTA+ISG      +   +  F+ M   G++   +  +  + A
Sbjct: 466 LDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISA 525

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
           CA ++ L  G+ IH  +Y  G+  D  +  AL+ +Y  C   +  A + FE+   KD + 
Sbjct: 526 CAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGR-IKEAYLEFEKIDAKDSIS 584

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           W+ +I G++QSG   +A+K+F++M   ++E +  T  + +S+    + +  G  +H  I+
Sbjct: 585 WNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMII 644

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
           K G + D+ + NAL+  Y+KCGSI  + + F EM  ++ VSW  +I+GY  HGYG EA+ 
Sbjct: 645 KRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVN 704

Query: 421 LFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLL 480
           LF +M++ G  P+ +T + +LSAC+H GLV +    F ++ KE  +     HYAC VDL+
Sbjct: 705 LFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAHYACVVDLI 764

Query: 481 GKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYT 540
            ++G +  A K +  MP++P   I  +L+SAC +H  +EV E  A  L+E EPE++A Y 
Sbjct: 765 SRAGFLSRARKFIEEMPIEPDATIWRTLLSACTVHKNVEVGEFAAQHLLELEPEDSATYV 824

Query: 541 LLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           LLS + + SG W   ++  ++MR +G+ K  G S IE
Sbjct: 825 LLSNMYAVSGKWDCRDQTRQMMRNRGVKKEPGRSWIE 861



 Score =  251 bits (641), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 137/415 (33%), Positives = 237/415 (57%), Gaps = 2/415 (0%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEM 89
             SV++AC+  +    +  Q+H   +  G    P+ISN LI +YAK     SA ++FD +
Sbjct: 114 FASVLRACSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNL 173

Query: 90  PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGR 149
             +D++SW ++I+ F+QNG+   ++ +F EM+  G      + + ++S C++I   ++G 
Sbjct: 174 CTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGE 233

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
           Q+HALV   GS  L  +V  AL+ LYS+  +++ A +VF +M  ++EVS+ ++ISG    
Sbjct: 234 QLHALVFKYGS-SLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQ 292

Query: 210 QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS 269
              D  ++LF  M+R+ +KP  VT+  +L ACA    L  G+ +H Y    G   D  + 
Sbjct: 293 GFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVE 352

Query: 270 AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
            AL+ +Y  C++ +  A  +F   + ++VV+W+ ++  + +  +LSE+ ++F +M+++ +
Sbjct: 353 GALLDLYVNCSD-IKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGL 411

Query: 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
            PN  T  +IL +CT    L  G  +H  ++K G  F+V + + L++MY+K G + ++H 
Sbjct: 412 IPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHV 471

Query: 390 IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
           I   +   D VSWT LISGY  H    EAL+ F EM   G++ D I   + +SAC
Sbjct: 472 ILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISAC 526



 Score =  235 bits (599), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 156/546 (28%), Positives = 268/546 (49%), Gaps = 7/546 (1%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           + E+ +HL+  E+H +G++    +  SV+  C   +     G QLH    K GS  +  +
Sbjct: 193 YEEEAIHLF-CEMHTAGIFPTPYVFSSVLSGCTKIKLFD-VGEQLHALVFKYGSSLETYV 250

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
            N+L+++Y++     SA ++F +M  +D +S+NS+I+   Q GF   +LE+F +M     
Sbjct: 251 CNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYL 310

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
                 +A ++S C+  G L  G Q+H+ VI  G     + V  ALLDLY  C     A 
Sbjct: 311 KPDCVTVASLLSACASNGALCKGEQLHSYVIKAG-ISSDMIVEGALLDLYVNCSDIKTAH 369

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
            +F      N V W  M+       N      +FR MQ +G+ P + T   +L  C  + 
Sbjct: 370 EMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVG 429

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
            L  G+ IH      GF F+ ++ + L+ MY +  + L  A +I       DVV W+++I
Sbjct: 430 ALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGK-LDTAHVILRTLTEDDVVSWTALI 488

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
            GY+Q    +EA+K F  M    I+ +++   + +S+C     L+ G  +H     +G +
Sbjct: 489 SGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYS 548

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            D+SIGNAL+++Y++CG I  ++  F ++ A+D +SW  LISG+   GY E+AL++F +M
Sbjct: 549 EDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQM 608

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
             + +E    T  + +SA  +   +K+ + +   ++K +     IE     +    K G 
Sbjct: 609 NRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIK-RGFDSDIEVSNALITFYAKCGS 667

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE-AEPENAANYTLLSM 544
           IEDA +    MP K      +++++    HG    A  L  ++ +  E  N   +  +  
Sbjct: 668 IEDARREFCEMPEKNDVS-WNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLS 726

Query: 545 VCSESG 550
            CS  G
Sbjct: 727 ACSHVG 732



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 127/452 (28%), Positives = 226/452 (50%), Gaps = 10/452 (2%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           +LH   LK G   + V+ N L+ +Y      +   ++F++MP R   SW+ II+ F +  
Sbjct: 31  KLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRSVRSWDKIISGFMEKK 90

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCS--QIGELELGRQIHALVIVDGSFELSVF 166
              R L++F  M            A ++  CS  +IG +    QIHA +I  G    S  
Sbjct: 91  MSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIG-IRYAEQIHARIICHGLL-CSPI 148

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           +S  L+ LY+K    + A +VF+ +  ++ VSW AMISG   +   +  I LF  M   G
Sbjct: 149 ISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAG 208

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           + PT    + VL  C +++    G+ +H   +  G   + ++  AL+ +Y      +  A
Sbjct: 209 IFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFV-SA 267

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
             +F + + KD V ++S+I G +Q G    A++LF++M+ + ++P+ VT+ ++LS+C   
Sbjct: 268 EKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASN 327

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
             L  G  +H Y++KAG++ D+ +  AL+++Y  C  I ++H++F      + V W  ++
Sbjct: 328 GALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVML 387

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
             +G      E+ ++F +MQ  G+ P+  T  +IL  C   G +   E +   V+   K 
Sbjct: 388 VAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVI---KT 444

Query: 467 ALAIEHYACYV--DLLGKSGKIEDACKVVSTM 496
                 Y C V  D+  K GK++ A  ++ T+
Sbjct: 445 GFQFNVYVCSVLIDMYAKHGKLDTAHVILRTL 476



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 174/329 (52%), Gaps = 3/329 (0%)

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           ++ LC   G L   +++H  ++  G    SV  +  L+D+Y         ++VFE M  R
Sbjct: 16  LLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNK-LVDVYFALGDLDGVVKVFEDMPNR 74

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR-DLRNGKAI 253
           +  SW  +ISG ++ +  +  +DLF  M  E V PT ++   VL AC+  R  +R  + I
Sbjct: 75  SVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYAEQI 134

Query: 254 HGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGD 313
           H    C G      +S  L+ +Y +    +  AR +F+    KD V W ++I G+SQ+G 
Sbjct: 135 HARIICHGLLCSPIISNPLIGLYAK-NGLIISARKVFDNLCTKDSVSWVAMISGFSQNGY 193

Query: 314 LSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNA 373
             EA+ LF  M    I P      ++LS CT+      G  +H  + K G + +  + NA
Sbjct: 194 EEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNA 253

Query: 374 LMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPD 433
           L+ +YS+  +  S+ ++F++M ++D VS+ +LISG    G+ + AL+LF +M+   ++PD
Sbjct: 254 LVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPD 313

Query: 434 AITVLAILSACNHAGLVKEAETLFNNVMK 462
            +TV ++LSAC   G + + E L + V+K
Sbjct: 314 CVTVASLLSACASNGALCKGEQLHSYVIK 342


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 195/563 (34%), Positives = 324/563 (57%), Gaps = 7/563 (1%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           E+  +G+  N   L +V+ ACA  +  +++G+++H   +K G D+DP  +N+L+ MYAK 
Sbjct: 178 EMISTGISPNEFSLSTVLNACAGLED-ENYGMKVHGYLIKLGYDSDPFSANALLDMYAKS 236

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
             PE+A  +F E+P  D +SWN++I     +     +L++  +M           L+  +
Sbjct: 237 GCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSAL 296

Query: 137 SLCSQIGELELGRQIH-ALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
             C+ IG ++LGRQ+H AL+ +D   E   FV   L+D+YSKC     A  VF+ M  ++
Sbjct: 297 KACAAIGLVKLGRQLHSALMKMD--MEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKD 354

Query: 196 EVSWTAMISGCIDSQNYDT-GIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
            + W ++ISG   +  YD   + LF  M +EG++  + TL+ +L + A  +     + +H
Sbjct: 355 VIVWNSIISG-YSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVH 413

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
             +   G+ +D +++ +L+  Y +C   L  A  +FE    +D+V ++S+I  YSQ G  
Sbjct: 414 TISIKSGYQYDGYVANSLLDSYGKCC-LLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLG 472

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
            EA+K++ RM+   I+P++    ++ ++C   S    G  +H +++K GL  DV  GN+L
Sbjct: 473 EEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSL 532

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           +NMY+KCGSI  +  IFNE++ R  VSW+ +I G   HG+G +ALQLF +M ++G+ P+ 
Sbjct: 533 VNMYAKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNH 592

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS 494
           IT++++LSACNHAGLV EA   F  + K   I    EHYAC VD+LG+ G++++A  +V 
Sbjct: 593 ITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHYACMVDILGRVGRLDEAMVLVK 652

Query: 495 TMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLG 554
            MP + S  +  +L+ A RIH  +E+    A  L+  EPE +  + LL+ + + +G W  
Sbjct: 653 EMPFQASAAVWGALLGAARIHKNIELGRHAAEMLLTLEPEKSGTHILLANIYASTGMWDN 712

Query: 555 AEEVWRVMRAKGLSKSYGFSRIE 577
             +V R M+   + K  G S IE
Sbjct: 713 VAKVRRSMKNSLVKKEPGMSWIE 735



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 151/554 (27%), Positives = 261/554 (47%), Gaps = 54/554 (9%)

Query: 70  ISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKA 129
           +++Y+K      A +L  +    D +SW+++I+ + QNG    +L  + EMYL G     
Sbjct: 89  VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNE 148

Query: 130 ELLAGIISLCSQIGELELGRQIHALVIV---------DGSFELSV--------------- 165
              + ++  CS    LELG+QIH + +V            F LS                
Sbjct: 149 FTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGM 208

Query: 166 ---------------FVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQ 210
                          F + ALLD+Y+K      A+ VF ++   + VSW A+I+GC+  +
Sbjct: 209 KVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHE 268

Query: 211 NYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSA 270
             D  + L   M    V P+  TL+  L ACA +  ++ G+ +H        + D  +  
Sbjct: 269 KNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGV 328

Query: 271 ALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE 330
            L+ MY +C   L  AR++F+    KDV++W+SII GYS  G   EAM LF+ M  E +E
Sbjct: 329 GLIDMYSKCG-LLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLE 387

Query: 331 PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQI 390
            N  TL  IL S            VH   +K+G  +D  + N+L++ Y KC  +  + ++
Sbjct: 388 FNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKV 447

Query: 391 FNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLV 450
           F    A D V++T++I+ Y  +G GEEAL+++L MQ+  ++PDA    ++ +AC +    
Sbjct: 448 FEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAY 507

Query: 451 KEAETLFNNVMKEKKIALAIEHYA--CYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSL 508
           ++ + +  +V+   K  L  + +A    V++  K G I+DA  + + +  +      S++
Sbjct: 508 EQGKQIHVHVL---KCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVS-WSAM 563

Query: 509 VSACRIHGRLEVAEMLAHQLIEAE--PENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566
           +     HG    A  L +Q+++    P +    ++LS  C+ +G    A   + +M    
Sbjct: 564 IGGLAQHGHGRKALQLFYQMLKNGILPNHITLVSVLS-ACNHAGLVTEARRFFGLME--- 619

Query: 567 LSKSYGFSRIENEY 580
             K +G +  +  Y
Sbjct: 620 --KLFGITPTQEHY 631



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 132/305 (43%), Gaps = 49/305 (16%)

Query: 237 VLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK 296
           +LL     +D+ +G AIH             L   L+++Y +C +    AR +   +   
Sbjct: 56  LLLQFTASKDVSSGMAIHARII---RLGLLGLRNRLVNLYSKC-QCFRVARKLVIDSSEP 111

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRL------------------------------ 326
           D+V WS++I GY Q+G   EA+  +  M L                              
Sbjct: 112 DLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLELGKQIH 171

Query: 327 ----------ERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
                       I PN  +L  +L++C      ++G+ VH Y++K G + D    NAL++
Sbjct: 172 RVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLD 231

Query: 377 MYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAIT 436
           MY+K G   ++  +F E+   D VSW  +I+G   H   + AL+L  +M    V P   T
Sbjct: 232 MYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFT 291

Query: 437 VLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACY--VDLLGKSGKIEDACKVVS 494
           + + L AC   GLVK    L + +M   K+ +  + +     +D+  K G ++DA  V  
Sbjct: 292 LSSALKACAAIGLVKLGRQLHSALM---KMDMEPDSFVGVGLIDMYSKCGLLQDARMVFD 348

Query: 495 TMPMK 499
            MP K
Sbjct: 349 LMPXK 353


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 187/571 (32%), Positives = 321/571 (56%), Gaps = 6/571 (1%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E  L ++ +E+  SG   +   + S++ ACA +    + G QLH   LK+G   D +I  
Sbjct: 226 ESALEIF-EEMRLSGWTPDCVTIASLLAACA-SIGDLNKGKQLHSYLLKAGMSPDYIIEG 283

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           SL+ +Y K      A ++F      + + WN ++  + Q     +S ++F +M   G   
Sbjct: 284 SLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRP 343

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL-IALR 186
                  ++  C+  GE+ LG QIH L I  G FE  ++VS  L+D+YSK + WL  A R
Sbjct: 344 NEFTYPCLLRTCTYAGEINLGEQIHLLSIKTG-FESDMYVSGVLIDMYSK-YGWLDKARR 401

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           + E +  ++ VSWT+MI+G +  +     ++ F+ MQ  G+ P  + L   + ACA ++ 
Sbjct: 402 ILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKA 461

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           +R G+ IH   Y  G+  D  +  AL+++Y  C  +   A  +FE  + KD + W+ ++ 
Sbjct: 462 MRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRS-KEAFSLFEAIEHKDKITWNGMVS 520

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           G++QSG   EA+++F +M    ++ N  T ++ +S+    + +  G  +H  ++K G   
Sbjct: 521 GFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCTS 580

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           +  + NAL+++Y KCGSI  +   F EM+ R+ VSW T+I+    HG+G EAL LF +M+
Sbjct: 581 ETEVANALISLYGKCGSIEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMK 640

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
           + G++P+ +T + +L+AC+H GLV+E    F ++  E  I    +HYAC VD+LG++G++
Sbjct: 641 QEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGIHPRPDHYACVVDILGRAGQL 700

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546
           + A K V  MP+  +  +  +L+SACR+H  +E+ E+ A  L+E EP ++A+Y LLS   
Sbjct: 701 DRARKFVEEMPVSANAMVWRTLLSACRVHKNIEIGELAAKYLLELEPHDSASYVLLSNAY 760

Query: 547 SESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           + +G W   + V ++M+ +G+ K  G S IE
Sbjct: 761 AVTGKWACRDHVRKMMKDRGVRKEPGRSWIE 791



 Score =  255 bits (652), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 166/549 (30%), Positives = 283/549 (51%), Gaps = 17/549 (3%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E+ + LY Q +H SG+     +L SV+ AC  A   +  G  +H    K GS ++ V+ N
Sbjct: 125 EEAVGLYHQ-MHCSGVVPTPYVLSSVLSACTKAALFEQ-GRLVHAQVYKQGSCSETVVGN 182

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +LI++Y +F     A ++F EMPY D +++N++I+   Q G    +LE+F EM L G+  
Sbjct: 183 ALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTP 242

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
               +A +++ C+ IG+L  G+Q+H+ ++  G       +  +LLDLY KC   + AL +
Sbjct: 243 DCVTIASLLAACASIGDLNKGKQLHSYLLKAG-MSPDYIIEGSLLDLYVKCGVIVEALEI 301

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F+     N V W  M+       +     DLF  M   GV+P   T   +L  C    ++
Sbjct: 302 FKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEI 361

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
             G+ IH  +   GF+ D ++S  L+ MY +    L  AR I E  + KDVV W+S+I G
Sbjct: 362 NLGEQIHLLSIKTGFESDMYVSGVLIDMYSK-YGWLDKARRILEVLEAKDVVSWTSMIAG 420

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
           Y Q     EA++ F  M+L  I P+++ L + +S+C     +  G  +H  +  +G + D
Sbjct: 421 YVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSAD 480

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
           VSI NAL+N+Y++CG    +  +F  +  +D ++W  ++SG+   G  EEAL++F++M +
Sbjct: 481 VSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQ 540

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK-----EKKIALAIEHYACYVDLLGK 482
           +GV+ +  T ++ +SA  +   +K+ + +   V+K     E ++A A+      + L GK
Sbjct: 541 AGVKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCTSETEVANAL------ISLYGK 594

Query: 483 SGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG-RLEVAEMLAHQLIEAEPENAANYTL 541
            G IEDA      M  +      ++++++C  HG  LE  ++      E    N   +  
Sbjct: 595 CGSIEDAKMQFFEMSERNHVS-WNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIG 653

Query: 542 LSMVCSESG 550
           +   CS  G
Sbjct: 654 VLAACSHVG 662



 Score =  221 bits (564), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 138/468 (29%), Positives = 246/468 (52%), Gaps = 14/468 (2%)

Query: 30  LPSVIKACAYAQTH---QHFGLQ--LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQ 84
           L SV  ACA  +     +H+ L   +H  A+  G   D +  N LI +YAK    + A +
Sbjct: 39  LGSVDFACALRECRGSVKHWPLVPVIHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARR 98

Query: 85  LFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGE 144
           +F+++  RD +SW ++++ + +NG    ++ ++ +M+  G V    +L+ ++S C++   
Sbjct: 99  VFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAAL 158

Query: 145 LELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMIS 204
            E GR +HA V   GS   +V V  AL+ LY +     +A RVF +M   + V++  +IS
Sbjct: 159 FEQGRLVHAQVYKQGSCSETV-VGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLIS 217

Query: 205 GCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDF 264
                 N ++ +++F  M+  G  P  VT+  +L ACA + DL  GK +H Y    G   
Sbjct: 218 RHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSP 277

Query: 265 DHHLSAALMHMYCEC---TEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
           D+ +  +L+ +Y +C    EAL     IF+     +VV+W+ ++  Y Q  DL+++  LF
Sbjct: 278 DYIIEGSLLDLYVKCGVIVEALE----IFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLF 333

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
            +M    + PN  T   +L +CT    ++ G  +H   +K G   D+ +   L++MYSK 
Sbjct: 334 CQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKY 393

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
           G +  + +I   + A+D VSWT++I+GY  H + +EAL+ F +MQ  G+ PD I + + +
Sbjct: 394 GWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAI 453

Query: 442 SACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
           SAC     +++ + + + V      A  +  +   V+L  + G+ ++A
Sbjct: 454 SACAGIKAMRQGQQIHSRVYVSGYSA-DVSIWNALVNLYARCGRSKEA 500



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/351 (28%), Positives = 171/351 (48%), Gaps = 7/351 (1%)

Query: 151 IHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQ 210
           IHA  I  G  E  +     L+DLY+K      A RVFEQ+  R+ VSW AM+SG   + 
Sbjct: 64  IHAKAITCGLGEDRI-AGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNG 122

Query: 211 NYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSA 270
             +  + L+  M   GV PT   L+ VL AC +      G+ +H   Y  G   +  +  
Sbjct: 123 LGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGN 182

Query: 271 ALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE 330
           AL+ +Y     +L  A  +F      D V ++++I  ++Q G+   A+++F  MRL    
Sbjct: 183 ALIALYLRFG-SLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWT 241

Query: 331 PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQI 390
           P+ VT+ ++L++C     L+ G  +H Y++KAG++ D  I  +L+++Y KCG I  + +I
Sbjct: 242 PDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEI 301

Query: 391 FNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLV 450
           F      + V W  ++  YG      ++  LF +M  +GV P+  T   +L  C +AG +
Sbjct: 302 FKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEI 361

Query: 451 KEAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDACKVVSTMPMK 499
              E +    +   K     + Y     +D+  K G ++ A +++  +  K
Sbjct: 362 NLGEQIH---LLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAK 409



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 144/279 (51%), Gaps = 14/279 (5%)

Query: 191 MVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNG 250
           M  R   S    ++G +  ++ +  + LF A  R+        L  V  ACA LR+ R  
Sbjct: 1   MTRRAAASLNKSLTGFLAHEDPEKLLSLFAAKVRQCR-----GLGSVDFACA-LRECRGS 54

Query: 251 -------KAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
                    IH  A  CG   D      L+ +Y +    +  AR +FE+   +D V W +
Sbjct: 55  VKHWPLVPVIHAKAITCGLGEDRIAGNLLIDLYAK-KGLVQRARRVFEQLSARDNVSWVA 113

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           ++ GY+++G   EA+ L+ +M    + P    L ++LS+CT+ +    G  VH  + K G
Sbjct: 114 MLSGYARNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQG 173

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
              +  +GNAL+ +Y + GS++ + ++F+EM   D V++ TLIS +   G GE AL++F 
Sbjct: 174 SCSETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFE 233

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462
           EM+ SG  PD +T+ ++L+AC   G + + + L + ++K
Sbjct: 234 EMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLK 272


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 192/551 (34%), Positives = 308/551 (55%), Gaps = 44/551 (7%)

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           N+++S+  KF K + A+ +F  MP  D  SWN++++ F Q+  +  +L  F +M+   FV
Sbjct: 89  NAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFV 148

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
           L        +S C+ + +L +G QIHAL I    + L V++ +AL+D+YSKC     A R
Sbjct: 149 LNEYSFGSALSACAGLTDLNMGIQIHAL-ISKSRYLLDVYMGSALVDMYSKCGVVACAQR 207

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTG--IDLFRAMQREGVKPTRVTLTIVLLACAEL 244
            F+ M +RN VSW ++I+ C + QN   G  +++F  M   GV+P  +TL  V+ ACA  
Sbjct: 208 AFDGMAVRNIVSWNSLIT-CYE-QNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASW 265

Query: 245 RDLRNGKAIHGYAYCCG-FDFDHHLSAALMHMYCECTEALHPARIIFERTKV-------- 295
             +R G  IH        +  D  L  AL+ MY +C   ++ AR++F+R  +        
Sbjct: 266 SAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRR-VNEARLVFDRMPLRNVVSETS 324

Query: 296 -----------------------KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPN 332
                                  K+VV W+++I GY+Q+G+  EA++LF  ++ E I P 
Sbjct: 325 MVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPT 384

Query: 333 SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF------DVSIGNALMNMYSKCGSITS 386
             T   +L++C   + L  G   H  I+K G  F      D+ +GN+L++MY KCG +  
Sbjct: 385 HYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVED 444

Query: 387 SHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH 446
              +F  M  RD VSW  +I GY  +GYG  AL++F +M  SG +PD +T++ +LSAC+H
Sbjct: 445 GCLVFERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSH 504

Query: 447 AGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILS 506
           AGLV+E    F+++  E  +A   +H+ C VDLLG++G +++A  ++ TMPM+P   +  
Sbjct: 505 AGLVEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPDNVVWG 564

Query: 507 SLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566
           SL++AC++HG +E+ + +A +L+E +P N+  Y LLS + +E G W     V + MR +G
Sbjct: 565 SLLAACKVHGNIELGKYVAEKLMEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQRG 624

Query: 567 LSKSYGFSRIE 577
           + K  G S IE
Sbjct: 625 VIKQPGCSWIE 635



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 122/446 (27%), Positives = 213/446 (47%), Gaps = 42/446 (9%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           +E+ L  +  ++H      N     S + ACA   T  + G+Q+H    KS    D  + 
Sbjct: 132 FEEALRFF-VDMHSEDFVLNEYSFGSALSACA-GLTDLNMGIQIHALISKSRYLLDVYMG 189

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           ++L+ MY+K      A + FD M  R+ +SWNS+I C+ QNG   ++LE+F  M   G  
Sbjct: 190 SALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVE 249

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
                LA ++S C+    +  G QIHA V+    +   + +  AL+D+Y+KC     A  
Sbjct: 250 PDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARL 309

Query: 187 VFEQMVIR-------------------------------NEVSWTAMISGCIDSQNYDTG 215
           VF++M +R                               N VSW A+I+G   +   +  
Sbjct: 310 VFDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEA 369

Query: 216 IDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAI------HGYAYCCGFDFDHHLS 269
           + LF  ++RE + PT  T   +L ACA L DL+ G+        HG+ +  G + D  + 
Sbjct: 370 VRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVG 429

Query: 270 AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
            +L+ MY +C   +    ++FER   +DVV W+++I GY+Q+G  + A+++F +M +   
Sbjct: 430 NSLIDMYMKCG-MVEDGCLVFERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQ 488

Query: 330 EPNSVTLLAILSSCTRQSFLSHGLG-VHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSH 388
           +P+ VT++ +LS+C+    +  G    H    + GL         ++++  + G +  ++
Sbjct: 489 KPDHVTMIGVLSACSHAGLVEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEAN 548

Query: 389 QIFNEMAAR-DFVSWTTLISGYGFHG 413
            +   M  + D V W +L++    HG
Sbjct: 549 DLIQTMPMQPDNVVWGSLLAACKVHG 574



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 110/417 (26%), Positives = 183/417 (43%), Gaps = 70/417 (16%)

Query: 148 GRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN------------ 195
            R+IHA +I    F   +F+   L+D Y KC ++  A +VF++M  RN            
Sbjct: 38  ARRIHARII-KTQFSSEIFIQNRLVDAYGKCGYFEDARKVFDRMPQRNTFSYNAVLSVLT 96

Query: 196 -------------------EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTI 236
                              + SW AM+SG      ++  +  F  M  E       +   
Sbjct: 97  KFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGS 156

Query: 237 VLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK 296
            L ACA L DL  G  IH       +  D ++ +AL+ MY +C   +  A+  F+   V+
Sbjct: 157 ALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCG-VVACAQRAFDGMAVR 215

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVH 356
           ++V W+S+I  Y Q+G   +A+++F  M    +EP+ +TL +++S+C   S +  GL +H
Sbjct: 216 NIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIH 275

Query: 357 CYIMKAG-LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR------------------ 397
             ++K      D+ +GNAL++MY+KC  +  +  +F+ M  R                  
Sbjct: 276 ARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARAASV 335

Query: 398 -------------DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
                        + VSW  LI+GY  +G  EEA++LFL ++   + P   T   +L+AC
Sbjct: 336 KAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNAC 395

Query: 445 NHAGLVKEAETLFNNVMKEKKIALAIEHYACYV-----DLLGKSGKIEDACKVVSTM 496
            +   +K        ++K      + E    +V     D+  K G +ED C V   M
Sbjct: 396 ANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERM 452



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 95/192 (49%), Gaps = 10/192 (5%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALK------SGSDADPVISNSLISMYAKFSKPESAYQL 85
           +++ ACA     +  G Q H   LK      SG ++D  + NSLI MY K    E    +
Sbjct: 390 NLLNACANLADLK-LGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLV 448

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL 145
           F+ M  RD +SWN++I  + QNG+   +LE+FR+M + G       + G++S CS  G +
Sbjct: 449 FERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLV 508

Query: 146 ELGRQ-IHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR-NEVSWTAMI 203
           E GR+  H++    G   +     T ++DL  +      A  + + M ++ + V W +++
Sbjct: 509 EEGRRYFHSMRTELGLAPMKDHF-TCMVDLLGRAGCLDEANDLIQTMPMQPDNVVWGSLL 567

Query: 204 SGCIDSQNYDTG 215
           + C    N + G
Sbjct: 568 AACKVHGNIELG 579



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 78/200 (39%), Gaps = 34/200 (17%)

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIF 391
           +S     +L SC R         +H  I+K   + ++ I N L++ Y KCG    + ++F
Sbjct: 18  DSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVF 77

Query: 392 NEMAAR-------------------------------DFVSWTTLISGYGFHGYGEEALQ 420
           + M  R                               D  SW  ++SG+  H   EEAL+
Sbjct: 78  DRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALR 137

Query: 421 LFLEMQESGVEPDAITVLAILSACNHAGLVK-EAETLFNNVMKEKKIALAIEHYACYVDL 479
            F++M       +  +  + LSAC  AGL         + ++ + +  L +   +  VD+
Sbjct: 138 FFVDMHSEDFVLNEYSFGSALSAC--AGLTDLNMGIQIHALISKSRYLLDVYMGSALVDM 195

Query: 480 LGKSGKIEDACKVVSTMPMK 499
             K G +  A +    M ++
Sbjct: 196 YSKCGVVACAQRAFDGMAVR 215


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  340 bits (871), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 182/533 (34%), Positives = 303/533 (56%), Gaps = 8/533 (1%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           GLQ+H   +K+G D    +SNSLI++Y K      A  LFD+   +  ++WNS+I+ +  
Sbjct: 217 GLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAA 276

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           NG  + +L MF  M L    L     A II LC+ + EL    Q+H  V+  G F     
Sbjct: 277 NGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYG-FVFDQN 335

Query: 167 VSTALLDLYSKCHHWLIALRVFEQM-VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
           + TAL+  YSKC   L ALR+F++   + N VSWTAMISG + +   +  + LF  M+R+
Sbjct: 336 IRTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRK 395

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
           GV+P   T +++L A   +    +   +H       ++    +  AL+  Y +  +    
Sbjct: 396 GVRPNEFTYSVILTALPVI----SPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEA 451

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           A++ F     KD+V WS+++ GY+Q+G+   A+K+FS +    ++PN  T  +IL+ C  
Sbjct: 452 AKV-FSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAA 510

Query: 346 QSF-LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
            +  +  G   H + +K+ L+  + + +AL+ MY+K G I S+ ++F     +D VSW +
Sbjct: 511 TTASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQREKDLVSWNS 570

Query: 405 LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK 464
           +ISGY  HG   +AL +F EM++  V+ D++T + + +AC HAGLV+E E  F+ ++++ 
Sbjct: 571 MISGYAQHGQAMKALDVFKEMKKRKVKMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDC 630

Query: 465 KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEML 524
           KIA   EH +C VDL  ++G++E A KV+  MP    + I  ++++ACR+H + E+  + 
Sbjct: 631 KIAPTKEHNSCMVDLYSRAGQLEKAMKVIDNMPNLAGSTIWRTILAACRVHKKTELGRLA 690

Query: 525 AHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           A ++I   PE++A Y LLS + +ESG+W    +V ++M  + + K  G+S IE
Sbjct: 691 AEKIIAMIPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIE 743



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 120/423 (28%), Positives = 221/423 (52%), Gaps = 6/423 (1%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G+  + +I  SV+K  A     + FG QLHC  +K G   D  +  SL+  Y K S  + 
Sbjct: 92  GMEMDCSIFSSVLKVSA-TLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKD 150

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
              +FDEM  R+ ++W ++I+ + +N      L +F  M   G    +   A  + + ++
Sbjct: 151 GRNVFDEMKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAE 210

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
            G    G Q+H +V+ +G  + ++ VS +L++LY KC +   A  +F++  +++ V+W +
Sbjct: 211 EGVGGRGLQVHTVVVKNG-LDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNS 269

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           MISG   +      + +F +M+   V+ +  +   ++  CA L++LR  + +H      G
Sbjct: 270 MISGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYG 329

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
           F FD ++  ALM  Y +C   L   R+  E   + +VV W+++I G+ Q+    EA+ LF
Sbjct: 330 FVFDQNIRTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLF 389

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
           S M+ + + PN  T   IL++    S       VH  ++K       ++G AL++ Y K 
Sbjct: 390 SEMKRKGVRPNEFTYSVILTALPVISPSE----VHAQVVKTNYERSSTVGTALLDAYVKL 445

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
           G +  + ++F+ +  +D V+W+ +++GY   G  E A+++F E+ + GV+P+  T  +IL
Sbjct: 446 GKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSIL 505

Query: 442 SAC 444
           + C
Sbjct: 506 NVC 508



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 133/426 (31%), Positives = 215/426 (50%), Gaps = 22/426 (5%)

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A+ LFD+ P RD  S+ S++  F+++G    +  +F  +   G  +   + + ++ + + 
Sbjct: 50  AHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSAT 109

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
           + +   GRQ+H   I  G F   V V T+L+D Y K  ++     VF++M  RN V+WT 
Sbjct: 110 LCDELFGRQLHCQCIKFG-FLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTT 168

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           +ISG   +   +  + LF  MQ EG +P   T    L   AE      G  +H      G
Sbjct: 169 LISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNG 228

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
            D    +S +L+++Y +C   +  ARI+F++T+VK VV W+S+I GY+ +G   EA+ +F
Sbjct: 229 LDKTIPVSNSLINLYLKCGN-VRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMF 287

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
             MRL  +  +  +  +I+  C     L     +HC ++K G  FD +I  ALM  YSKC
Sbjct: 288 YSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKC 347

Query: 382 GSITSSHQIFNEMA-ARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
            ++  + ++F E     + VSWT +ISG+  +   EEA+ LF EM+  GV P+  T   I
Sbjct: 348 MAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVI 407

Query: 441 LSACN-------HAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVV 493
           L+A         HA +VK       N  +   +  A+      +D   K GK+++A KV 
Sbjct: 408 LTALPVISPSEVHAQVVK------TNYERSSTVGTAL------LDAYVKLGKVDEAAKVF 455

Query: 494 STMPMK 499
           S +  K
Sbjct: 456 SGIDNK 461



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 98/191 (51%), Gaps = 1/191 (0%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           EL   G+  N     S++  CA        G Q H  A+KS  D+   +S++L++MYAK 
Sbjct: 488 ELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKK 547

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
              ESA ++F     +D +SWNS+I+ + Q+G  +++L++F+EM      + +    G+ 
Sbjct: 548 GHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDSVTFIGVF 607

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV-IRN 195
           + C+  G +E G +   +++ D     +   ++ ++DLYS+      A++V + M  +  
Sbjct: 608 AACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIDNMPNLAG 667

Query: 196 EVSWTAMISGC 206
              W  +++ C
Sbjct: 668 STIWRTILAAC 678


>gi|11994503|dbj|BAB02568.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1161

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 184/520 (35%), Positives = 298/520 (57%), Gaps = 6/520 (1%)

Query: 64  VISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC 123
           + SN LI MY K  +P  AY++FD MP R+ +SW+++++    NG    SL +F EM   
Sbjct: 413 ITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQ 472

Query: 124 GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
           G        +  +  C  +  LE G QIH   +  G FE+ V V  +L+D+YSKC     
Sbjct: 473 GIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIG-FEMMVEVGNSLVDMYSKCGRINE 531

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK--PTRVTLTIVLLAC 241
           A +VF ++V R+ +SW AMI+G + +      +D F  MQ   +K  P   TLT +L AC
Sbjct: 532 AEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKAC 591

Query: 242 AELRDLRNGKAIHGYAYCCGF--DFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVV 299
           +    +  GK IHG+    GF       ++ +L+ +Y +C   L  AR  F++ K K ++
Sbjct: 592 SSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCG-YLFSARKAFDQIKEKTMI 650

Query: 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
            WSS+I GY+Q G+  EAM LF R++    + +S  L +I+      + L  G  +    
Sbjct: 651 SWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALA 710

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEAL 419
           +K     + S+ N++++MY KCG +  + + F EM  +D +SWT +I+GYG HG G++++
Sbjct: 711 VKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSV 770

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479
           ++F EM    +EPD +  LA+LSAC+H+G++KE E LF+ +++   I   +EHYAC VDL
Sbjct: 771 RIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDL 830

Query: 480 LGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANY 539
           LG++G++++A  ++ TMP+KP+  I  +L+S CR+HG +E+ + +   L+  + +N ANY
Sbjct: 831 LGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAKNPANY 890

Query: 540 TLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIENE 579
            ++S +  ++G W        +   KGL K  G S +E E
Sbjct: 891 VMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEIE 930



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 113/406 (27%), Positives = 208/406 (51%), Gaps = 16/406 (3%)

Query: 163 LSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM 222
           L++  S  L+D+Y KC   L+A +VF+ M  RN VSW+A++SG + + +    + LF  M
Sbjct: 410 LNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEM 469

Query: 223 QREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEA 282
            R+G+ P   T +  L AC  L  L  G  IHG+    GF+    +  +L+ MY +C   
Sbjct: 470 GRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGR- 528

Query: 283 LHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE--PNSVTLLAIL 340
           ++ A  +F R   + ++ W+++I G+  +G  S+A+  F  M+   I+  P+  TL ++L
Sbjct: 529 INEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLL 588

Query: 341 SSCTRQSFLSHGLGVHCYIMKAGLNFDVS--IGNALMNMYSKCGSITSSHQIFNEMAARD 398
            +C+    +  G  +H +++++G +   S  I  +L+++Y KCG + S+ + F+++  + 
Sbjct: 589 KACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKT 648

Query: 399 FVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFN 458
            +SW++LI GY   G   EA+ LF  +QE   + D+  + +I+       L+++ + +  
Sbjct: 649 MISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQA 708

Query: 459 NVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRL 518
             +K     L        VD+  K G +++A K  + M +K      + +++    HG  
Sbjct: 709 LAVKLPS-GLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVIS-WTVVITGYGKHGLG 766

Query: 519 EVA-----EMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVW 559
           + +     EML H +   EP+      +LS  CS SG     EE++
Sbjct: 767 KKSVRIFYEMLRHNI---EPDEVCYLAVLS-ACSHSGMIKEGEELF 808



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/418 (25%), Positives = 199/418 (47%), Gaps = 10/418 (2%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           E+   G+Y N     + +KAC      +  GLQ+H   LK G +    + NSL+ MY+K 
Sbjct: 468 EMGRQGIYPNEFTFSTNLKACGLLNALEK-GLQIHGFCLKIGFEMMVEVGNSLVDMYSKC 526

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE--LLAG 134
            +   A ++F  +  R  ISWN++I  F   G+  ++L+ F  M       + +   L  
Sbjct: 527 GRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTS 586

Query: 135 IISLCSQIGELELGRQIHALVIVDGSF-ELSVFVSTALLDLYSKCHHWLIALRVFEQMVI 193
           ++  CS  G +  G+QIH  ++  G     S  ++ +L+DLY KC +   A + F+Q+  
Sbjct: 587 LLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKE 646

Query: 194 RNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAI 253
           +  +SW+++I G      +   + LF+ +Q    +     L+ ++   A+   LR GK +
Sbjct: 647 KTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQM 706

Query: 254 HGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGD 313
              A       +  +  +++ MY +C   +  A   F   ++KDV+ W+ +I GY + G 
Sbjct: 707 QALAVKLPSGLETSVLNSVVDMYLKCG-LVDEAEKCFAEMQLKDVISWTVVITGYGKHGL 765

Query: 314 LSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA-GLNFDVSIGN 372
             +++++F  M    IEP+ V  LA+LS+C+    +  G  +   +++  G+   V    
Sbjct: 766 GKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYA 825

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVS-WTTLISGYGFHG---YGEEALQLFLEMQ 426
            ++++  + G +  +  + + M  +  V  W TL+S    HG    G+E  ++ L + 
Sbjct: 826 CVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRID 883


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 188/503 (37%), Positives = 290/503 (57%), Gaps = 29/503 (5%)

Query: 78  KPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS 137
           +PESA +LFD++  RD ISWNS+I+ +  NG   R L ++++M   G  +    +  ++ 
Sbjct: 200 RPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLV 259

Query: 138 LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197
            C+  G L LG+ +H+L I   SFE  +  S  LLD+YSKC     ALRVFE+M  RN V
Sbjct: 260 GCANSGTLSLGKAVHSLAI-KSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVV 318

Query: 198 SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
           SWT+MI+G       D  I L + M++EGVK   V +T +L ACA    L NGK +H Y 
Sbjct: 319 SWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYI 378

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
                  +  +  ALM MY +C  ++  A  +F    VKD++ W++++      G+L   
Sbjct: 379 KANNMASNLFVCNALMDMYAKCG-SMEGANSVFSTMVVKDIISWNTMV------GEL--- 428

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
                       +P+S T+  IL +C   S L  G  +H YI++ G + D  + NAL+++
Sbjct: 429 ------------KPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDL 476

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           Y KCG +  +  +F+ + ++D VSWT +I+GYG HGYG EA+  F EM+++G+EPD ++ 
Sbjct: 477 YVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSF 536

Query: 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
           ++IL AC+H+GL+++    F  +  +  I   +EHYAC VDLL ++G +  A K + T+P
Sbjct: 537 ISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLP 596

Query: 498 MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEE 557
           + P   I  +L+  CRI+  +E+AE +A ++ E EPEN   Y LL+ + +E+      EE
Sbjct: 597 IAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEK---REE 653

Query: 558 VWRV---MRAKGLSKSYGFSRIE 577
           V R+   +  KGL K+ G S IE
Sbjct: 654 VKRMREKIGKKGLRKNPGCSWIE 676



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/410 (29%), Positives = 212/410 (51%), Gaps = 29/410 (7%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           VS    E+ L +YKQ ++  G+  + A + SV+  CA + T    G  +H  A+KS  + 
Sbjct: 227 VSNGLTERGLGIYKQMMYL-GIDVDLATIISVLVGCANSGTLS-LGKAVHSLAIKSSFER 284

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
               SN+L+ MY+K    + A ++F++M  R+ +SW S+I  +T++G+   ++ + ++M 
Sbjct: 285 RINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQME 344

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
             G  L    +  I+  C++ G L+ G+ +H  +  + +   ++FV  AL+D+Y+KC   
Sbjct: 345 KEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKAN-NMASNLFVCNALMDMYAKCGSM 403

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             A  VF  MV+++ +SW  M+                       +KP   T+  +L AC
Sbjct: 404 EGANSVFSTMVVKDIISWNTMVG---------------------ELKPDSRTMACILPAC 442

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A L  L  GK IHGY    G+  D H++ AL+ +Y +C   L  AR++F+    KD+V W
Sbjct: 443 ASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCG-VLGLARLLFDMIPSKDLVSW 501

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           + +I GY   G  +EA+  F+ MR   IEP+ V+ ++IL +C+    L  G     YIMK
Sbjct: 502 TVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFF-YIMK 560

Query: 362 AGLNFDVSIGN--ALMNMYSKCGSITSSHQIFNEMA-ARDFVSWTTLISG 408
              N +  + +   ++++ S+ G+++ +++    +  A D   W  L+ G
Sbjct: 561 NDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCG 610



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 118/492 (23%), Positives = 214/492 (43%), Gaps = 92/492 (18%)

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
           L+ +    ++ LC+ +  L  G+++H+ +I   S  +   +   L+  Y+ C       R
Sbjct: 97  LETKTYGSVLQLCAGLKSLTDGKKVHS-IIKSNSVGVDEALGLKLVSFYATCGDLKEGRR 155

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTR--------------- 231
           VF+ M  +N   W  M+S      ++   I LF+ M  +G++  R               
Sbjct: 156 VFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRD 215

Query: 232 ------------------------------------VTLTIVLLACAELRDLRNGKAIHG 255
                                                T+  VL+ CA    L  GKA+H 
Sbjct: 216 VISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHS 275

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
            A    F+   + S  L+ MY +C + L  A  +FE+   ++VV W+S+I GY++ G   
Sbjct: 276 LAIKSSFERRINFSNTLLDMYSKCGD-LDGALRVFEKMGERNVVSWTSMIAGYTRDGWSD 334

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
            A+ L  +M  E ++ + V + +IL +C R   L +G  VH YI    +  ++ + NALM
Sbjct: 335 GAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALM 394

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           +MY+KCGS+  ++ +F+ M  +D +SW T++        GE             ++PD+ 
Sbjct: 395 DMYAKCGSMEGANSVFSTMVVKDIISWNTMV--------GE-------------LKPDSR 433

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMK-----EKKIALAIEHYACYVDLLGKSGKIEDAC 490
           T+  IL AC     ++  + +   +++     ++ +A A+      VDL  K G +  A 
Sbjct: 434 TMACILPACASLSALERGKEIHGYILRNGYSSDRHVANAL------VDLYVKCGVLGLAR 487

Query: 491 KVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLSMVCSE 548
            +   +P K      + +++   +HG    A    +++ +A  EP+  +  ++L   CS 
Sbjct: 488 LLFDMIPSKDLVS-WTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISIL-YACSH 545

Query: 549 SGNWLGAEEVWR 560
           SG     E+ WR
Sbjct: 546 SGL---LEQGWR 554



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 70/343 (20%), Positives = 143/343 (41%), Gaps = 64/343 (18%)

Query: 285 PARIIFERTKVKD--VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSS 342
           P RI    T+  D  V  +++ I  + Q GDL  AM+L    +   +E  + T  ++L  
Sbjct: 51  PVRISATPTRTIDHQVTDYNAKILHFCQLGDLENAMELVCMCQKSELE--TKTYGSVLQL 108

Query: 343 CTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSIT----------------- 385
           C     L+ G  VH  I    +  D ++G  L++ Y+ CG +                  
Sbjct: 109 CAGLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLW 168

Query: 386 ----------------------------------SSHQIFNEMAARDFVSWTTLISGYGF 411
                                             S+ ++F+++  RD +SW ++ISGY  
Sbjct: 169 NFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVS 228

Query: 412 HGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK---EKKIAL 468
           +G  E  L ++ +M   G++ D  T++++L  C ++G +   + + +  +K   E++I  
Sbjct: 229 NGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINF 288

Query: 469 AIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
           +       +D+  K G ++ A +V   M  + +    +S+++     G  + A +L  Q+
Sbjct: 289 S----NTLLDMYSKCGDLDGALRVFEKMGER-NVVSWTSMIAGYTRDGWSDGAIILLQQM 343

Query: 529 -IEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKS 570
             E    +    T +   C+ SG+    ++V   ++A  ++ +
Sbjct: 344 EKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASN 386


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 197/557 (35%), Positives = 306/557 (54%), Gaps = 4/557 (0%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           GL  + A + +VI ACA A      G+ +H  A K G   +  ++NSL+ MY+K      
Sbjct: 294 GLVPDVATMVTVIPACA-AVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGE 352

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAEL-LAGIISLCS 140
           A  LFD    ++ +SWN+II  +++ G +    E+ +EM     V   E+ +  ++  CS
Sbjct: 353 ARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACS 412

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
              +L   ++IH      G F     V+ A +  Y+KC     A RVF  M  +   SW 
Sbjct: 413 GEHQLLSLKEIHGYAFRHG-FLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWN 471

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
           A+I     +      +DLF  M   G+ P R T+  +LLACA L+ LR GK IHG+    
Sbjct: 472 ALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRN 531

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
           G + D  +  +LM +Y +C+  L   ++IF++ + K +V W+ +I G+SQ+    EA+  
Sbjct: 532 GLELDEFIGISLMSLYIQCSSML-LGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDT 590

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
           F +M    I+P  + +  +L +C++ S L  G  VH + +KA L+ D  +  AL++MY+K
Sbjct: 591 FRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAK 650

Query: 381 CGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
           CG +  S  IF+ +  +D   W  +I+GYG HG+G +A++LF  MQ  G  PD+ T L +
Sbjct: 651 CGCMEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGV 710

Query: 441 LSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKP 500
           L ACNHAGLV E       +     +   +EHYAC VD+LG++G++ +A K+V+ MP +P
Sbjct: 711 LIACNHAGLVTEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDEP 770

Query: 501 STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWR 560
            + I SSL+S+CR +G LE+ E ++ +L+E EP  A NY LLS + +  G W    +V +
Sbjct: 771 DSGIWSSLLSSCRNYGDLEIGEEVSKKLLELEPNKAENYVLLSNLYAGLGKWDEVRKVRQ 830

Query: 561 VMRAKGLSKSYGFSRIE 577
            M+  GL K  G S IE
Sbjct: 831 RMKENGLHKDAGCSWIE 847



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 156/552 (28%), Positives = 282/552 (51%), Gaps = 14/552 (2%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
            +   + L+ + L  + L  +   LP V KACA        G  +H  ALK+G  +D  +
Sbjct: 174 LFRDAISLFLELLSATDLAPDNFTLPCVAKACA-GVADVELGEAVHALALKAGGFSDAFV 232

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC-- 123
            N+LI+MY K    ESA ++F+ M  R+ +SWNS++   ++NG +     +F+ + +   
Sbjct: 233 GNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEE 292

Query: 124 -GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL 182
            G V     +  +I  C+ +GE+ +G  +H L    G  E  V V+ +L+D+YSKC +  
Sbjct: 293 EGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITE-EVTVNNSLVDMYSKCGYLG 351

Query: 183 IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR-EGVKPTRVTLTIVLLAC 241
            A  +F+    +N VSW  +I G     ++    +L + MQR E V+   VT+  VL AC
Sbjct: 352 EARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPAC 411

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           +    L + K IHGYA+  GF  D  ++ A +  Y +C+ +L  A  +F   + K V  W
Sbjct: 412 SGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCS-SLDCAERVFCGMEGKTVSSW 470

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           +++I  ++Q+G   +++ LF  M    ++P+  T+ ++L +C R  FL  G  +H ++++
Sbjct: 471 NALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLR 530

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
            GL  D  IG +LM++Y +C S+     IF++M  +  V W  +I+G+  +    EAL  
Sbjct: 531 NGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDT 590

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
           F +M   G++P  I V  +L AC+    ++  + + +  +K      A    A  +D+  
Sbjct: 591 FRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCA-LIDMYA 649

Query: 482 KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGR-LEVAEMLAHQLIEAEPENAANYT 540
           K G +E +  +   +  K    + + +++   IHG  L+  E+   +L++ +     ++T
Sbjct: 650 KCGCMEQSQNIFDRVNEKDEA-VWNVIIAGYGIHGHGLKAIELF--ELMQNKGGRPDSFT 706

Query: 541 LLSMV--CSESG 550
            L ++  C+ +G
Sbjct: 707 FLGVLIACNHAG 718



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 126/420 (30%), Positives = 224/420 (53%), Gaps = 13/420 (3%)

Query: 33  VIKACAYAQTHQHFGLQLHCTALKSGSDA---DPVISNSLISMYAKFSKPESAYQLFDEM 89
           +++AC +   + H G ++H  AL S S     D V+S  +I+MY+    P  +  +FD  
Sbjct: 98  LLRACGH-HKNIHVGRKVH--ALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAA 154

Query: 90  PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAEL-LAGIISLCSQIGELELG 148
             +D   +N++++ +++N  +  ++ +F E+     +      L  +   C+ + ++ELG
Sbjct: 155 KEKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELG 214

Query: 149 RQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCID 208
             +HAL +  G F    FV  AL+ +Y KC     A++VFE M  RN VSW +++  C +
Sbjct: 215 EAVHALALKAGGFS-DAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSE 273

Query: 209 SQNYDTGIDLFRAM---QREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFD 265
           +  +     +F+ +   + EG+ P   T+  V+ ACA + ++R G  +HG A+  G   +
Sbjct: 274 NGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEE 333

Query: 266 HHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM- 324
             ++ +L+ MY +C   L  AR +F+    K+VV W++II GYS+ GD     +L   M 
Sbjct: 334 VTVNNSLVDMYSKCG-YLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQ 392

Query: 325 RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSI 384
           R E++  N VT+L +L +C+ +  L     +H Y  + G   D  + NA +  Y+KC S+
Sbjct: 393 REEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSL 452

Query: 385 TSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
             + ++F  M  +   SW  LI  +  +G+  ++L LFL M +SG++PD  T+ ++L AC
Sbjct: 453 DCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLAC 512



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 105/389 (26%), Positives = 189/389 (48%), Gaps = 23/389 (5%)

Query: 64  VISNSLISMYAKFSKP--ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
            +  S ++ + K   P  +  + L D     D ++   +++   QNG  V S ++ +E  
Sbjct: 40  TVPKSSLTSHTKTHSPILQRLHNLCDSGNLNDALN---LLHSHAQNG-TVSSSDISKEAI 95

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
             G +L+A         C     + +GR++HALV         V +ST ++ +YS C   
Sbjct: 96  --GILLRA---------CGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSP 144

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLF-RAMQREGVKPTRVTLTIVLLA 240
             +  VF+    ++   + A++SG   +  +   I LF   +    + P   TL  V  A
Sbjct: 145 SDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKA 204

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
           CA + D+  G+A+H  A   G   D  +  AL+ MY +C   +  A  +FE  + +++V 
Sbjct: 205 CAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCG-FVESAVKVFETMRNRNLVS 263

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRL---ERIEPNSVTLLAILSSCTRQSFLSHGLGVHC 357
           W+S++   S++G   E   +F R+ +   E + P+  T++ ++ +C     +  G+ VH 
Sbjct: 264 WNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHG 323

Query: 358 YIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEE 417
              K G+  +V++ N+L++MYSKCG +  +  +F+    ++ VSW T+I GY   G    
Sbjct: 324 LAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRG 383

Query: 418 ALQLFLEMQ-ESGVEPDAITVLAILSACN 445
             +L  EMQ E  V  + +TVL +L AC+
Sbjct: 384 VFELLQEMQREEKVRVNEVTVLNVLPACS 412


>gi|356567222|ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Glycine max]
          Length = 887

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 175/531 (32%), Positives = 306/531 (57%), Gaps = 3/531 (0%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G ++H  AL+ G  +D V++  ++SMYAK  + + A + F  +  RD + W++ ++   Q
Sbjct: 347 GKEVHNYALQLGMTSDIVVATPIVSMYAKCGELKKAKEFFLSLEGRDLVVWSAFLSALVQ 406

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
            G+   +L +F+EM   G      +L+ ++S C++I    LG+ +H  VI        + 
Sbjct: 407 AGYPGEALSIFQEMQHEGLKPDKTILSSLVSACAEISSSRLGKMMHCYVI-KADMGSDIS 465

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           V+T L+ +Y++C  ++ A+ +F +M  ++ V+W  +I+G     +    +++F  +Q  G
Sbjct: 466 VATTLVSMYTRCKSFMYAMTLFNRMHYKDVVAWNTLINGFTKCGDPRLALEMFLRLQLSG 525

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           V+P   T+  +L ACA L DL  G   HG     G + + H+  AL+ MY +C  +L  A
Sbjct: 526 VQPDSGTMVSLLSACALLDDLYLGICFHGNIIKNGIESEMHVKVALIDMYAKCG-SLCTA 584

Query: 287 RIIFERTK-VKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
             +F   K VKD V W+ +I GY  +G  +EA+  F++M+LE + PN VT + IL + + 
Sbjct: 585 ENLFHLNKHVKDEVSWNVMIAGYLHNGCANEAISTFNQMKLESVRPNLVTFVTILPAVSY 644

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
            S L   +  H  I++ G      IGN+L++MY+K G ++ S + F+EM  +  +SW  +
Sbjct: 645 LSILREAMAFHACIIRMGFISSTLIGNSLIDMYAKSGQLSYSEKCFHEMENKGTISWNAM 704

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           +SGY  HG GE AL LF  MQE+ V  D+++ +++LSAC HAGL++E   +F ++ ++  
Sbjct: 705 LSGYAMHGQGEVALALFSLMQETHVPVDSVSYISVLSACRHAGLIQEGRNIFQSMTEKHN 764

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
           +  ++EHYAC VDLLG +G  ++   ++  MP +P  ++  +L+ AC++H  +++ E+  
Sbjct: 765 LEPSMEHYACMVDLLGCAGLFDEVLCLIDKMPTEPDAQVWGALLGACKMHSNVKLGEIAL 824

Query: 526 HQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
           H L++ EP NA +Y +LS + ++ G W+ A      M   GL K+ G+S +
Sbjct: 825 HHLLKLEPRNAVHYIVLSDIYAQCGRWIDARRTRSNMTDHGLKKNPGYSWV 875



 Score =  245 bits (626), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 143/488 (29%), Positives = 263/488 (53%), Gaps = 18/488 (3%)

Query: 5   HFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPV 64
           H +++ +  Y Q +   GL  +      V+KAC  A    H G+ +H        + D  
Sbjct: 106 HLFQEAIKSY-QTMSYMGLEPDKYTFTFVLKACTGALDF-HEGVAIHQDIASRELECDVF 163

Query: 65  ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL-C 123
           I   L+ MY K    ++A ++FD+MP +D  SWN++I+  +Q+     +LE+F+ M +  
Sbjct: 164 IGTGLVDMYCKMGHLDNARKVFDKMPGKDVASWNAMISGLSQSSNPCEALEIFQRMQMEE 223

Query: 124 GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
           G    +  +  +    S++ +++  + IH  V+    F +   VS +L+D+YSKC    +
Sbjct: 224 GVEPDSVSILNLAPAVSRLEDVDSCKSIHGYVVRRCVFGV---VSNSLIDMYSKCGEVKL 280

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
           A ++F+QM +++++SW  M++G +    Y   + L   M+R+ +K  ++++   +LA  E
Sbjct: 281 AHQIFDQMWVKDDISWATMMAGYVHHGCYFEVLQLLDEMKRKHIKMNKISVVNSVLAATE 340

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
            RDL  GK +H YA   G   D  ++  ++ MY +C E L  A+  F   + +D+V+WS+
Sbjct: 341 TRDLEKGKEVHNYALQLGMTSDIVVATPIVSMYAKCGE-LKKAKEFFLSLEGRDLVVWSA 399

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
            +    Q+G   EA+ +F  M+ E ++P+   L +++S+C   S    G  +HCY++KA 
Sbjct: 400 FLSALVQAGYPGEALSIFQEMQHEGLKPDKTILSSLVSACAEISSSRLGKMMHCYVIKAD 459

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
           +  D+S+   L++MY++C S   +  +FN M  +D V+W TLI+G+   G    AL++FL
Sbjct: 460 MGSDISVATTLVSMYTRCKSFMYAMTLFNRMHYKDVVAWNTLINGFTKCGDPRLALEMFL 519

Query: 424 EMQESGVEPDAITVLAILSACN-----HAGLVKEAETLFNNVMKEKKIALAIEHYACYVD 478
            +Q SGV+PD+ T++++LSAC      + G+      + N +  E  + +A+      +D
Sbjct: 520 RLQLSGVQPDSGTMVSLLSACALLDDLYLGICFHGNIIKNGIESEMHVKVAL------ID 573

Query: 479 LLGKSGKI 486
           +  K G +
Sbjct: 574 MYAKCGSL 581



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 107/352 (30%), Positives = 186/352 (52%), Gaps = 7/352 (1%)

Query: 95  ISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHAL 154
           I WNS+I  +++   +  +++ ++ M   G          ++  C+   +   G  IH  
Sbjct: 93  ILWNSLIRAYSRLHLFQEAIKSYQTMSYMGLEPDKYTFTFVLKACTGALDFHEGVAIHQ- 151

Query: 155 VIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDT 214
            I     E  VF+ T L+D+Y K  H   A +VF++M  ++  SW AMISG   S N   
Sbjct: 152 DIASRELECDVFIGTGLVDMYCKMGHLDNARKVFDKMPGKDVASWNAMISGLSQSSNPCE 211

Query: 215 GIDLFRAMQ-REGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC-CGFDFDHHLSAAL 272
            +++F+ MQ  EGV+P  V++  +  A + L D+ + K+IHGY    C F     +S +L
Sbjct: 212 ALEIFQRMQMEEGVEPDSVSILNLAPAVSRLEDVDSCKSIHGYVVRRCVFGV---VSNSL 268

Query: 273 MHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPN 332
           + MY +C E +  A  IF++  VKD + W++++ GY   G   E ++L   M+ + I+ N
Sbjct: 269 IDMYSKCGE-VKLAHQIFDQMWVKDDISWATMMAGYVHHGCYFEVLQLLDEMKRKHIKMN 327

Query: 333 SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFN 392
            ++++  + + T    L  G  VH Y ++ G+  D+ +   +++MY+KCG +  + + F 
Sbjct: 328 KISVVNSVLAATETRDLEKGKEVHNYALQLGMTSDIVVATPIVSMYAKCGELKKAKEFFL 387

Query: 393 EMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
            +  RD V W+  +S     GY  EAL +F EMQ  G++PD   + +++SAC
Sbjct: 388 SLEGRDLVVWSAFLSALVQAGYPGEALSIFQEMQHEGLKPDKTILSSLVSAC 439



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 111/382 (29%), Positives = 196/382 (51%), Gaps = 39/382 (10%)

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258
           W ++I        +   I  ++ M   G++P + T T VL AC    D   G AIH    
Sbjct: 95  WNSLIRAYSRLHLFQEAIKSYQTMSYMGLEPDKYTFTFVLKACTGALDFHEGVAIHQDIA 154

Query: 259 CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAM 318
               + D  +   L+ MYC+    L  AR +F++   KDV  W+++I G SQS +  EA+
Sbjct: 155 SRELECDVFIGTGLVDMYCKMGH-LDNARKVFDKMPGKDVASWNAMISGLSQSSNPCEAL 213

Query: 319 KLFSRMRLER-IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
           ++F RM++E  +EP+SV++L +  + +R   +     +H Y+++  + F V + N+L++M
Sbjct: 214 EIFQRMQMEEGVEPDSVSILNLAPAVSRLEDVDSCKSIHGYVVRRCV-FGV-VSNSLIDM 271

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           YSKCG +  +HQIF++M  +D +SW T+++GY  HG   E LQL  EM+   ++ + I+V
Sbjct: 272 YSKCGEVKLAHQIFDQMWVKDDISWATMMAGYVHHGCYFEVLQLLDEMKRKHIKMNKISV 331

Query: 438 L-AILSACNHAGLVKEAET--------LFNNVM----------------KEKKIALAIEH 472
           + ++L+A     L K  E         + ++++                K K+  L++E 
Sbjct: 332 VNSVLAATETRDLEKGKEVHNYALQLGMTSDIVVATPIVSMYAKCGELKKAKEFFLSLEG 391

Query: 473 -----YACYVDLLGKSGKIEDACKVVSTMP---MKPSTRILSSLVSACRIHGRLEVAEML 524
                ++ ++  L ++G   +A  +   M    +KP   ILSSLVSAC       + +M+
Sbjct: 392 RDLVVWSAFLSALVQAGYPGEALSIFQEMQHEGLKPDKTILSSLVSACAEISSSRLGKMM 451

Query: 525 AHQLIEAE--PENAANYTLLSM 544
              +I+A+   + +   TL+SM
Sbjct: 452 HCYVIKADMGSDISVATTLVSM 473



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 106/203 (52%), Gaps = 4/203 (1%)

Query: 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHC 357
           +++W+S+IR YS+     EA+K +  M    +EP+  T   +L +CT       G+ +H 
Sbjct: 92  LILWNSLIRAYSRLHLFQEAIKSYQTMSYMGLEPDKYTFTFVLKACTGALDFHEGVAIHQ 151

Query: 358 YIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEE 417
            I    L  DV IG  L++MY K G + ++ ++F++M  +D  SW  +ISG        E
Sbjct: 152 DIASRELECDVFIGTGLVDMYCKMGHLDNARKVFDKMPGKDVASWNAMISGLSQSSNPCE 211

Query: 418 ALQLFLEMQ-ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACY 476
           AL++F  MQ E GVEPD++++L +  A +    V   +++   V++     +        
Sbjct: 212 ALEIFQRMQMEEGVEPDSVSILNLAPAVSRLEDVDSCKSIHGYVVRRCVFGVVSN---SL 268

Query: 477 VDLLGKSGKIEDACKVVSTMPMK 499
           +D+  K G+++ A ++   M +K
Sbjct: 269 IDMYSKCGEVKLAHQIFDQMWVK 291



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 107/238 (44%), Gaps = 3/238 (1%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
            L  SG+  ++  + S++ ACA      + G+  H   +K+G +++  +  +LI MYAK 
Sbjct: 520 RLQLSGVQPDSGTMVSLLSACALLDD-LYLGICFHGNIIKNGIESEMHVKVALIDMYAKC 578

Query: 77  SKPESAYQLFDEMPY-RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
               +A  LF    + +D +SWN +I  +  NG    ++  F +M L            I
Sbjct: 579 GSLCTAENLFHLNKHVKDEVSWNVMIAGYLHNGCANEAISTFNQMKLESVRPNLVTFVTI 638

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           +   S +  L      HA +I  G F  S  +  +L+D+Y+K      + + F +M  + 
Sbjct: 639 LPAVSYLSILREAMAFHACIIRMG-FISSTLIGNSLIDMYAKSGQLSYSEKCFHEMENKG 697

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAI 253
            +SW AM+SG       +  + LF  MQ   V    V+   VL AC     ++ G+ I
Sbjct: 698 TISWNAMLSGYAMHGQGEVALALFSLMQETHVPVDSVSYISVLSACRHAGLIQEGRNI 755



 Score = 42.7 bits (99), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 1/108 (0%)

Query: 392 NEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVK 451
           N +     + W +LI  Y      +EA++ +  M   G+EPD  T   +L AC  A    
Sbjct: 85  NSITNPSLILWNSLIRAYSRLHLFQEAIKSYQTMSYMGLEPDKYTFTFVLKACTGALDFH 144

Query: 452 EAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           E   +  ++   +++   +      VD+  K G +++A KV   MP K
Sbjct: 145 EGVAIHQDI-ASRELECDVFIGTGLVDMYCKMGHLDNARKVFDKMPGK 191


>gi|224132434|ref|XP_002328268.1| predicted protein [Populus trichocarpa]
 gi|222837783|gb|EEE76148.1| predicted protein [Populus trichocarpa]
          Length = 749

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 189/559 (33%), Positives = 323/559 (57%), Gaps = 7/559 (1%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           +G   N + +  VI+AC    T +H GL LH   +KSG  A   + NSL+SMY   +  E
Sbjct: 143 AGFEPNISTMVLVIQACRILGT-KHDGLILHGYLIKSGFWAISSVQNSLLSMYVD-ADME 200

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC-GFVLKAELLAGIISLC 139
            A +LFDEM  +D I+W+ +I  + Q       L+MFR+M L  G      ++  ++  C
Sbjct: 201 CARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGIEPDGVVMVSVLKAC 260

Query: 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSW 199
           +   ++  GR +H LVI  G F+  +FV  +L+D+YSKC     A +VF ++  RN VSW
Sbjct: 261 ASSRDVCTGRLVHGLVIHRG-FDCDLFVENSLIDMYSKCKDAGSAFKVFNEISQRNNVSW 319

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
            +M+SG + ++NY     L  +M++E V+   VTL  +L  C       + K+IH     
Sbjct: 320 NSMLSGFVLNENYSEAQSLISSMRKERVETDEVTLVNILQICKYFVHPFHCKSIHCVMIR 379

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
            G + +  + +AL+  Y +C   +  A  +F R + +DVV WS++I G++  G   EA+ 
Sbjct: 380 RGSEANELVLSALIDAYAKCY-LIEIAWEVFARMRRRDVVSWSTMISGFAHCGKPDEAIA 438

Query: 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           ++  M  + ++PN +T++ +L +C+  + L      H   ++ G   +V++G A+++MYS
Sbjct: 439 VYQEMDRDLVKPNVITIINLLEACSVTAELKRSKWAHGVAIRQGFASEVTVGTAVVDMYS 498

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           KCG I +S + F+++A ++ V+W+ +I+ YG +G   EAL LF EM+  G++P+ +T L+
Sbjct: 499 KCGEILASRRAFDQLALKNIVTWSAMIAAYGMNGLAHEALALFAEMKRHGLKPNPVTTLS 558

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP-- 497
           +L+AC+H GLV+E  +LF ++++E  +    EHY+C VD+LG++GK++ A +V+  MP  
Sbjct: 559 VLAACSHGGLVEEGLSLFKSMVQELGLEPGFEHYSCMVDMLGRAGKLDTAIEVIKAMPHN 618

Query: 498 MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEE 557
           +K    I  SL+SACR +G  E+ +    +++E EP N+A Y + S + +  G W  A  
Sbjct: 619 LKNGASIWGSLLSACRSYGLTELGKEAISRVLELEPSNSAGYLVASSMYAADGLWDDAAR 678

Query: 558 VWRVMRAKGLSKSYGFSRI 576
           +  + + KG+    G+S +
Sbjct: 679 IRVLAKEKGVKVVAGYSLV 697



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 155/543 (28%), Positives = 274/543 (50%), Gaps = 19/543 (3%)

Query: 16  QELHPSGLYS-NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYA 74
            E+  +G+ + + ++ P ++KA ++  +H+H G  LH   +K G D+   I NS++  Y 
Sbjct: 36  HEIKKAGIQTVDVSVFPPILKAWSFL-SHRH-GKSLHACLIKQGFDSFTSIGNSIMGFYI 93

Query: 75  KFSKPESAYQLFDEMPY-RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLA 133
           +    + A  +F+ M   RD++SWN +I+    NG  V  L  F    + GF      + 
Sbjct: 94  RCGDFDIAVDVFNSMRRSRDSVSWNILIHGHLDNGALVAGLWWFTNARVAGFEPNISTMV 153

Query: 134 GIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI 193
            +I  C  +G    G  +H  +I  G + +S  V  +LL +Y        A  +F++M  
Sbjct: 154 LVIQACRILGTKHDGLILHGYLIKSGFWAISS-VQNSLLSMYVDADM-ECARELFDEMHE 211

Query: 194 RNEVSWTAMISGCIDSQNYDTGIDLFRAMQR-EGVKPTRVTLTIVLLACAELRDLRNGKA 252
           ++ ++W+ MI G +  +    G+ +FR M    G++P  V +  VL ACA  RD+  G+ 
Sbjct: 212 KDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGIEPDGVVMVSVLKACASSRDVCTGRL 271

Query: 253 IHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSG 312
           +HG     GFD D  +  +L+ MY +C +A   A  +F     ++ V W+S++ G+  + 
Sbjct: 272 VHGLVIHRGFDCDLFVENSLIDMYSKCKDA-GSAFKVFNEISQRNNVSWNSMLSGFVLNE 330

Query: 313 DLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN 372
           + SEA  L S MR ER+E + VTL+ IL  C       H   +HC +++ G   +  + +
Sbjct: 331 NYSEAQSLISSMRKERVETDEVTLVNILQICKYFVHPFHCKSIHCVMIRRGSEANELVLS 390

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
           AL++ Y+KC  I  + ++F  M  RD VSW+T+ISG+   G  +EA+ ++ EM    V+P
Sbjct: 391 ALIDAYAKCYLIEIAWEVFARMRRRDVVSWSTMISGFAHCGKPDEAIAVYQEMDRDLVKP 450

Query: 433 DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKV 492
           + IT++ +L AC+    +K ++   + V   +  A  +      VD+  K G+I  + + 
Sbjct: 451 NVITIINLLEACSVTAELKRSK-WAHGVAIRQGFASEVTVGTAVVDMYSKCGEILASRRA 509

Query: 493 VSTMPMKPSTRILSSLVSACRIHGRLE-----VAEMLAHQLIEAEPENAANYTLLSMVCS 547
              + +K +    S++++A  ++G         AEM  H L   +P      ++L+  CS
Sbjct: 510 FDQLALK-NIVTWSAMIAAYGMNGLAHEALALFAEMKRHGL---KPNPVTTLSVLA-ACS 564

Query: 548 ESG 550
             G
Sbjct: 565 HGG 567



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 126/425 (29%), Positives = 223/425 (52%), Gaps = 10/425 (2%)

Query: 11  LHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLI 70
           L ++++ +   G+  +  ++ SV+KACA ++     G  +H   +  G D D  + NSLI
Sbjct: 234 LQMFRKMVLVPGIEPDGVVMVSVLKACASSRD-VCTGRLVHGLVIHRGFDCDLFVENSLI 292

Query: 71  SMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE 130
            MY+K     SA+++F+E+  R+ +SWNS+++ F  N  Y  +  +   M          
Sbjct: 293 DMYSKCKDAGSAFKVFNEISQRNNVSWNSMLSGFVLNENYSEAQSLISSMRKERVETDEV 352

Query: 131 LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQ 190
            L  I+ +C         + IH ++I  GS E +  V +AL+D Y+KC+   IA  VF +
Sbjct: 353 TLVNILQICKYFVHPFHCKSIHCVMIRRGS-EANELVLSALIDAYAKCYLIEIAWEVFAR 411

Query: 191 MVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNG 250
           M  R+ VSW+ MISG       D  I +++ M R+ VKP  +T+  +L AC+   +L+  
Sbjct: 412 MRRRDVVSWSTMISGFAHCGKPDEAIAVYQEMDRDLVKPNVITIINLLEACSVTAELKRS 471

Query: 251 KAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQ 310
           K  HG A   GF  +  +  A++ MY +C E L  +R  F++  +K++V WS++I  Y  
Sbjct: 472 KWAHGVAIRQGFASEVTVGTAVVDMYSKCGEIL-ASRRAFDQLALKNIVTWSAMIAAYGM 530

Query: 311 SGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV-HCYIMKAGLNFDVS 369
           +G   EA+ LF+ M+   ++PN VT L++L++C+    +  GL +    + + GL     
Sbjct: 531 NGLAHEALALFAEMKRHGLKPNPVTTLSVLAACSHGGLVEEGLSLFKSMVQELGLEPGFE 590

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMA--ARDFVS-WTTLISG---YGFHGYGEEALQLFL 423
             + +++M  + G + ++ ++   M    ++  S W +L+S    YG    G+EA+   L
Sbjct: 591 HYSCMVDMLGRAGKLDTAIEVIKAMPHNLKNGASIWGSLLSACRSYGLTELGKEAISRVL 650

Query: 424 EMQES 428
           E++ S
Sbjct: 651 ELEPS 655



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 115/227 (50%), Gaps = 2/227 (0%)

Query: 219 FRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCE 278
           +  +++ G++   V++   +L        R+GK++H      GFD    +  ++M  Y  
Sbjct: 35  YHEIKKAGIQTVDVSVFPPILKAWSFLSHRHGKSLHACLIKQGFDSFTSIGNSIMGFYIR 94

Query: 279 CTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLA 338
           C +      +     + +D V W+ +I G+  +G L   +  F+  R+   EPN  T++ 
Sbjct: 95  CGDFDIAVDVFNSMRRSRDSVSWNILIHGHLDNGALVAGLWWFTNARVAGFEPNISTMVL 154

Query: 339 ILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARD 398
           ++ +C        GL +H Y++K+G     S+ N+L++MY     +  + ++F+EM  +D
Sbjct: 155 VIQACRILGTKHDGLILHGYLIKSGFWAISSVQNSLLSMYVD-ADMECARELFDEMHEKD 213

Query: 399 FVSWTTLISGYGFHGYGEEALQLFLEMQ-ESGVEPDAITVLAILSAC 444
            ++W+ +I GY      +  LQ+F +M    G+EPD + ++++L AC
Sbjct: 214 VIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGIEPDGVVMVSVLKAC 260


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 179/572 (31%), Positives = 318/572 (55%), Gaps = 4/572 (0%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           ++ + L+ + +H  G   N  +  +++K     +  +     LH    K G +++  +  
Sbjct: 23  DEVVDLFSR-VHREGHELNPFVFTTILKLLVSVECAE-LAYSLHACIYKLGHESNAFVGT 80

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +LI  YA      SA Q FD +  +D +SW  ++ C+ +N  +  SL++F EM + GF  
Sbjct: 81  ALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDSLQLFAEMRMVGFNP 140

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
                AG++  C  +    +G+ +H  V+    +E+ ++V   LLDLY+K       LRV
Sbjct: 141 NHFTFAGVLKACIGLEAFSVGKSVHGCVL-KTCYEMDLYVGVGLLDLYTKFGDANDVLRV 199

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           FE+M   + + W+ MIS    S      ++LF  M+R  V P + T   VL +CA + +L
Sbjct: 200 FEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENL 259

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
           + GK +H +    G D +  +S ALM +Y +C    +  ++  E    ++ V W+++I G
Sbjct: 260 QLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPN-RNEVTWNTMIVG 318

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
           Y QSGD  +A+ L+  M   +++ + VT  ++L +C   + +  G  +H   +K   + D
Sbjct: 319 YVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKD 378

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
           V +GNAL++MY+KCGSI ++  +F+ ++ RD +SW  +ISGY  HG   EAL+ F  MQE
Sbjct: 379 VVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQE 438

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487
           +   P+ +T ++ILSAC++AGL+   +  F +++++  I   +EHY C V LLG+SG ++
Sbjct: 439 TECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLD 498

Query: 488 DACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCS 547
            A K++  +P++P+ ++  +L+ AC IH  +++  M A Q+++ +P++ A + LLS + +
Sbjct: 499 KAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQILQIDPQDEATHVLLSNIYA 558

Query: 548 ESGNWLGAEEVWRVMRAKGLSKSYGFSRIENE 579
            +  W     V + M+ KG+ K  G S IEN+
Sbjct: 559 RTRRWNSVASVRKFMKNKGVKKEPGLSWIENQ 590



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 155/313 (49%), Gaps = 10/313 (3%)

Query: 191 MVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG--VKPTRVTLTIVLLACAELRDLR 248
           M  RN VS+  +I G + S   D  +DLF  + REG  + P   T  + LL   E  +L 
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAEL- 59

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
              ++H   Y  G + +  +  AL+  Y  C  +++ AR  F+    KD+V W+ ++  Y
Sbjct: 60  -AYSLHACIYKLGHESNAFVGTALIDAYAVCG-SVNSARQAFDAIACKDMVSWTGMVACY 117

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
           +++    ++++LF+ MR+    PN  T   +L +C      S G  VH  ++K     D+
Sbjct: 118 AENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDL 177

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
            +G  L+++Y+K G      ++F EM   D + W+ +IS Y       EA++LF +M+ +
Sbjct: 178 YVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRA 237

Query: 429 GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYA--CYVDLLGKSGKI 486
            V P+  T  ++L +C     ++  + +  +V+   K+ L    +     +D+  K G++
Sbjct: 238 FVLPNQFTFASVLQSCASIENLQLGKQVHCHVL---KVGLDGNVFVSNALMDVYAKCGRL 294

Query: 487 EDACKVVSTMPMK 499
           +++ K+   +P +
Sbjct: 295 DNSMKLFMELPNR 307


>gi|118488304|gb|ABK95971.1| unknown [Populus trichocarpa]
          Length = 749

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 189/559 (33%), Positives = 323/559 (57%), Gaps = 7/559 (1%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           +G   N + +  VI+AC    T +H GL LH   +KSG  A   + NSL+SMY   +  E
Sbjct: 143 AGFEPNISTMVLVIQACRILGT-KHDGLILHGYLIKSGFWAISSVQNSLLSMYVD-ADME 200

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC-GFVLKAELLAGIISLC 139
            A +LFDEM  +D I+W+ +I  + Q       L+MFR+M L  G      ++  ++  C
Sbjct: 201 CARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGIEPDGVVMVSVLKAC 260

Query: 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSW 199
           +   ++  GR +H LVI  G F+  +FV  +L+D+YSKC     A +VF ++  RN VSW
Sbjct: 261 ASSRDVCTGRLVHGLVIHRG-FDCDLFVENSLIDMYSKCKDAGSAFKVFNEISQRNNVSW 319

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
            +M+SG + ++NY     L  +M++E V+   VTL  +L  C       + K+IH     
Sbjct: 320 NSMLSGFVLNENYSEAQSLISSMRKERVETDEVTLVNILQICKYFVHPFHCKSIHCVMIR 379

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
            G + +  + +AL+  Y +C   +  A  +F R + +DVV WS++I G++  G   EA+ 
Sbjct: 380 RGSEANELVLSALIDAYAKCY-LIEIAWEVFARMRRRDVVSWSTMISGFAHCGKPDEAIA 438

Query: 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           ++  M  + ++PN +T++ +L +C+  + L      H   ++ G   +V++G A+++MYS
Sbjct: 439 VYQEMDRDLVKPNVITIINLLEACSVTAELKRSKWAHGVAIRQGFASEVTVGTAVVDMYS 498

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           KCG I +S + F+++A ++ V+W+ +I+ YG +G   EAL LF EM+  G++P+ +T L+
Sbjct: 499 KCGEILASRRAFDQLALKNIVTWSAMIAAYGMNGLAHEALALFAEMKRHGLKPNPVTTLS 558

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP-- 497
           +L+AC+H GLV+E  +LF ++++E  +    EHY+C VD+LG++GK++ A +V+  MP  
Sbjct: 559 VLAACSHGGLVEEGLSLFKSMVQELGLEPGFEHYSCMVDMLGRAGKLDTAIEVIKAMPDN 618

Query: 498 MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEE 557
           +K    I  SL+SACR +G  E+ +    +++E EP N+A Y + S + +  G W  A  
Sbjct: 619 LKNGASIWGSLLSACRSYGLTELGKEAISRVLELEPSNSAGYLVASSMYAADGLWDDAAR 678

Query: 558 VWRVMRAKGLSKSYGFSRI 576
           +  + + KG+    G+S +
Sbjct: 679 IRVLAKEKGVKVVAGYSLV 697



 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 155/543 (28%), Positives = 274/543 (50%), Gaps = 19/543 (3%)

Query: 16  QELHPSGLYS-NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYA 74
            E+  +G+ + + ++ P ++KA ++  +H+H G  LH   +K G D+   I NS++  Y 
Sbjct: 36  HEIKKAGIQTVDVSVFPPILKAWSFL-SHRH-GKSLHACLIKQGFDSFTSIGNSIMGFYI 93

Query: 75  KFSKPESAYQLFDEMPY-RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLA 133
           +    + A  +F+ M   RD++SWN +I+    NG  V  L  F    + GF      + 
Sbjct: 94  RCGDFDIAVDVFNSMRRSRDSVSWNILIHGHLDNGALVAGLWWFTNARVAGFEPNISTMV 153

Query: 134 GIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI 193
            +I  C  +G    G  +H  +I  G + +S  V  +LL +Y        A  +F++M  
Sbjct: 154 LVIQACRILGTKHDGLILHGYLIKSGFWAISS-VQNSLLSMYVDADM-ECARELFDEMHE 211

Query: 194 RNEVSWTAMISGCIDSQNYDTGIDLFRAMQR-EGVKPTRVTLTIVLLACAELRDLRNGKA 252
           ++ ++W+ MI G +  +    G+ +FR M    G++P  V +  VL ACA  RD+  G+ 
Sbjct: 212 KDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGIEPDGVVMVSVLKACASSRDVCTGRL 271

Query: 253 IHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSG 312
           +HG     GFD D  +  +L+ MY +C +A   A  +F     ++ V W+S++ G+  + 
Sbjct: 272 VHGLVIHRGFDCDLFVENSLIDMYSKCKDA-GSAFKVFNEISQRNNVSWNSMLSGFVLNE 330

Query: 313 DLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN 372
           + SEA  L S MR ER+E + VTL+ IL  C       H   +HC +++ G   +  + +
Sbjct: 331 NYSEAQSLISSMRKERVETDEVTLVNILQICKYFVHPFHCKSIHCVMIRRGSEANELVLS 390

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
           AL++ Y+KC  I  + ++F  M  RD VSW+T+ISG+   G  +EA+ ++ EM    V+P
Sbjct: 391 ALIDAYAKCYLIEIAWEVFARMRRRDVVSWSTMISGFAHCGKPDEAIAVYQEMDRDLVKP 450

Query: 433 DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKV 492
           + IT++ +L AC+    +K ++   + V   +  A  +      VD+  K G+I  + + 
Sbjct: 451 NVITIINLLEACSVTAELKRSK-WAHGVAIRQGFASEVTVGTAVVDMYSKCGEILASRRA 509

Query: 493 VSTMPMKPSTRILSSLVSACRIHGRLE-----VAEMLAHQLIEAEPENAANYTLLSMVCS 547
              + +K +    S++++A  ++G         AEM  H L   +P      ++L+  CS
Sbjct: 510 FDQLALK-NIVTWSAMIAAYGMNGLAHEALALFAEMKRHGL---KPNPVTTLSVLA-ACS 564

Query: 548 ESG 550
             G
Sbjct: 565 HGG 567



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 126/425 (29%), Positives = 223/425 (52%), Gaps = 10/425 (2%)

Query: 11  LHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLI 70
           L ++++ +   G+  +  ++ SV+KACA ++     G  +H   +  G D D  + NSLI
Sbjct: 234 LQMFRKMVLVPGIEPDGVVMVSVLKACASSRD-VCTGRLVHGLVIHRGFDCDLFVENSLI 292

Query: 71  SMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE 130
            MY+K     SA+++F+E+  R+ +SWNS+++ F  N  Y  +  +   M          
Sbjct: 293 DMYSKCKDAGSAFKVFNEISQRNNVSWNSMLSGFVLNENYSEAQSLISSMRKERVETDEV 352

Query: 131 LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQ 190
            L  I+ +C         + IH ++I  GS E +  V +AL+D Y+KC+   IA  VF +
Sbjct: 353 TLVNILQICKYFVHPFHCKSIHCVMIRRGS-EANELVLSALIDAYAKCYLIEIAWEVFAR 411

Query: 191 MVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNG 250
           M  R+ VSW+ MISG       D  I +++ M R+ VKP  +T+  +L AC+   +L+  
Sbjct: 412 MRRRDVVSWSTMISGFAHCGKPDEAIAVYQEMDRDLVKPNVITIINLLEACSVTAELKRS 471

Query: 251 KAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQ 310
           K  HG A   GF  +  +  A++ MY +C E L  +R  F++  +K++V WS++I  Y  
Sbjct: 472 KWAHGVAIRQGFASEVTVGTAVVDMYSKCGEIL-ASRRAFDQLALKNIVTWSAMIAAYGM 530

Query: 311 SGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV-HCYIMKAGLNFDVS 369
           +G   EA+ LF+ M+   ++PN VT L++L++C+    +  GL +    + + GL     
Sbjct: 531 NGLAHEALALFAEMKRHGLKPNPVTTLSVLAACSHGGLVEEGLSLFKSMVQELGLEPGFE 590

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAA--RDFVS-WTTLISG---YGFHGYGEEALQLFL 423
             + +++M  + G + ++ ++   M    ++  S W +L+S    YG    G+EA+   L
Sbjct: 591 HYSCMVDMLGRAGKLDTAIEVIKAMPDNLKNGASIWGSLLSACRSYGLTELGKEAISRVL 650

Query: 424 EMQES 428
           E++ S
Sbjct: 651 ELEPS 655



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 115/227 (50%), Gaps = 2/227 (0%)

Query: 219 FRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCE 278
           +  +++ G++   V++   +L        R+GK++H      GFD    +  ++M  Y  
Sbjct: 35  YHEIKKAGIQTVDVSVFPPILKAWSFLSHRHGKSLHACLIKQGFDSFTSIGNSIMGFYIR 94

Query: 279 CTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLA 338
           C +      +     + +D V W+ +I G+  +G L   +  F+  R+   EPN  T++ 
Sbjct: 95  CGDFDIAVDVFNSMRRSRDSVSWNILIHGHLDNGALVAGLWWFTNARVAGFEPNISTMVL 154

Query: 339 ILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARD 398
           ++ +C        GL +H Y++K+G     S+ N+L++MY     +  + ++F+EM  +D
Sbjct: 155 VIQACRILGTKHDGLILHGYLIKSGFWAISSVQNSLLSMYVD-ADMECARELFDEMHEKD 213

Query: 399 FVSWTTLISGYGFHGYGEEALQLFLEMQ-ESGVEPDAITVLAILSAC 444
            ++W+ +I GY      +  LQ+F +M    G+EPD + ++++L AC
Sbjct: 214 VIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGIEPDGVVMVSVLKAC 260


>gi|225445472|ref|XP_002281953.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial [Vitis vinifera]
          Length = 773

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 193/545 (35%), Positives = 312/545 (57%), Gaps = 13/545 (2%)

Query: 38  AYAQTHQHF--GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTI 95
           A+   H+ F  G QLH   LK G D +  + N+LI+MY++  +   A ++FDEM  +D +
Sbjct: 184 AFCSDHEGFIFGFQLHSRILKCGLDCEVFVGNALITMYSRCCRLVEARRVFDEMRNKDLV 243

Query: 96  SWNSIINCFTQNGFY-VRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHAL 154
           SWN++++ + Q G   + ++ +F EM   G  L      G IS C    E ELGRQIH+L
Sbjct: 244 SWNAMLSGYAQEGNSGLEAILVFLEMLKEGMKLDHVSFTGAISACGHGKEFELGRQIHSL 303

Query: 155 VIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDT 214
            +  G ++  V V   L+  YSKC     A  VFE ++ RN VSWT MIS      + + 
Sbjct: 304 AVKIG-YDTHVKVCNVLISTYSKCEDIEDAKLVFESIIDRNVVSWTTMIS-----ISEED 357

Query: 215 GIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMH 274
              LF  M+R+GV P  VT   ++ A      +  G+ IHG      F  + ++S +L+ 
Sbjct: 358 ATSLFNEMRRDGVYPNDVTFVGLIHAITMKNLVEEGQMIHGVCVKTSFLSELNVSNSLIT 417

Query: 275 MYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSV 334
           MY +  E++  +  +FE    ++++ W+S+I GY+Q+G   EA++ F    +E   PN  
Sbjct: 418 MYAKF-ESMSDSMKVFEELNYREIISWNSLISGYAQNGLWQEALQTFLSALMES-RPNEF 475

Query: 335 TLLAILSSCTRQSFLS--HGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFN 392
           T  ++LSS      +S  HG   H +I+K GLN +  + +AL++MY+K GSI  S  +F+
Sbjct: 476 TFGSVLSSIASAEAISMRHGQRCHSHILKLGLNTNPIVSSALLDMYAKRGSICESLGVFS 535

Query: 393 EMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKE 452
           E   ++ V+WT +IS +  HG  E  + LF +M+  GV+PD+IT LA+++AC   G+V  
Sbjct: 536 ETPLKNEVAWTAIISAHARHGDYEAVMNLFKDMEREGVKPDSITFLAVITACGRKGMVDT 595

Query: 453 AETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSAC 512
              LFN+++K+  I  + EHY+  VD+LG++G++++A + V  +P      +L SL+ AC
Sbjct: 596 GYQLFNSMVKDHLIEPSPEHYSSMVDMLGRAGRLKEAEEFVGQIPGGAGLSVLQSLLGAC 655

Query: 513 RIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYG 572
           RIHG +++A+ +A  LIE EP  + +Y L+S + +E G W    ++ + MR +G+ K  G
Sbjct: 656 RIHGNVDMAKRVADDLIEMEPMGSGSYVLMSNLYAEKGEWEKVAKIRKGMRERGVRKEIG 715

Query: 573 FSRIE 577
           FS ++
Sbjct: 716 FSWVD 720



 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 156/552 (28%), Positives = 280/552 (50%), Gaps = 31/552 (5%)

Query: 9   QTLHLYKQELHPSGLYSN--TAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           + L L+K++L   G   N     +  V+KAC         G Q+H  A+ SG  +   + 
Sbjct: 61  EALDLFKKQLQ-WGFVGNIDQVTVAIVLKACC---GDSKLGCQIHAFAISSGFISHVTVP 116

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           NSL++MY K    + A  +F+ +   D +SWN++++ F ++     +L     M   G  
Sbjct: 117 NSLMNMYCKAGLFDRALVVFENLNNPDIVSWNTVLSGFQRSD---DALNFALRMNFTGVA 173

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
             A     +++ CS       G Q+H+ ++  G  +  VFV  AL+ +YS+C   + A R
Sbjct: 174 FDAVTCTTVLAFCSDHEGFIFGFQLHSRILKCG-LDCEVFVGNALITMYSRCCRLVEARR 232

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGID---LFRAMQREGVKPTRVTLTIVLLACAE 243
           VF++M  ++ VSW AM+SG   +Q  ++G++   +F  M +EG+K   V+ T  + AC  
Sbjct: 233 VFDEMRNKDLVSWNAMLSGY--AQEGNSGLEAILVFLEMLKEGMKLDHVSFTGAISACGH 290

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
            ++   G+ IH  A   G+D    +   L+  Y +C E +  A+++FE    ++VV W++
Sbjct: 291 GKEFELGRQIHSLAVKIGYDTHVKVCNVLISTYSKC-EDIEDAKLVFESIIDRNVVSWTT 349

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           +I     S    +A  LF+ MR + + PN VT + ++ + T ++ +  G  +H   +K  
Sbjct: 350 MI-----SISEEDATSLFNEMRRDGVYPNDVTFVGLIHAITMKNLVEEGQMIHGVCVKTS 404

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
              ++++ N+L+ MY+K  S++ S ++F E+  R+ +SW +LISGY  +G  +EALQ FL
Sbjct: 405 FLSELNVSNSLITMYAKFESMSDSMKVFEELNYREIISWNSLISGYAQNGLWQEALQTFL 464

Query: 424 E-MQESGVEPDAITVLAILSACNHAGLV--KEAETLFNNVMKEKKIALAIEHYACYVDLL 480
             + ES   P+  T  ++LS+   A  +  +  +   ++++K       I   A  +D+ 
Sbjct: 465 SALMES--RPNEFTFGSVLSSIASAEAISMRHGQRCHSHILKLGLNTNPIVSSA-LLDMY 521

Query: 481 GKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYT 540
            K G I ++  V S  P+K      ++++SA   HG  E A M   + +E E     + T
Sbjct: 522 AKRGSICESLGVFSETPLKNEV-AWTAIISAHARHGDYE-AVMNLFKDMEREGVKPDSIT 579

Query: 541 LLSMV--CSESG 550
            L+++  C   G
Sbjct: 580 FLAVITACGRKG 591



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 132/479 (27%), Positives = 225/479 (46%), Gaps = 18/479 (3%)

Query: 73  YAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELL 132
           +  F   +  +Q  D+ P     S N  +    +    + +L++F++    GFV   + +
Sbjct: 22  FKYFHSSKHVHQPLDQSPQTTIASLNRSMLTALRRNLSLEALDLFKKQLQWGFVGNIDQV 81

Query: 133 AGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV 192
              I L +  G+ +LG QIHA  I  G F   V V  +L+++Y K   +  AL VFE + 
Sbjct: 82  TVAIVLKACCGDSKLGCQIHAFAISSG-FISHVTVPNSLMNMYCKAGLFDRALVVFENLN 140

Query: 193 IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKA 252
             + VSW  ++SG    Q  D  ++    M   GV    VT T VL  C++      G  
Sbjct: 141 NPDIVSWNTVLSGF---QRSDDALNFALRMNFTGVAFDAVTCTTVLAFCSDHEGFIFGFQ 197

Query: 253 IHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSG 312
           +H     CG D +  +  AL+ MY  C   L  AR +F+  + KD+V W++++ GY+Q G
Sbjct: 198 LHSRILKCGLDCEVFVGNALITMYSRCCR-LVEARRVFDEMRNKDLVSWNAMLSGYAQEG 256

Query: 313 DLS-EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
           +   EA+ +F  M  E ++ + V+    +S+C        G  +H   +K G +  V + 
Sbjct: 257 NSGLEAILVFLEMLKEGMKLDHVSFTGAISACGHGKEFELGRQIHSLAVKIGYDTHVKVC 316

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
           N L++ YSKC  I  +  +F  +  R+ VSWTT+IS        E+A  LF EM+  GV 
Sbjct: 317 NVLISTYSKCEDIEDAKLVFESIIDRNVVSWTTMIS-----ISEEDATSLFNEMRRDGVY 371

Query: 432 PDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACK 491
           P+ +T + ++ A     LV+E + +    +K   ++  +      + +  K   + D+ K
Sbjct: 372 PNDVTFVGLIHAITMKNLVEEGQMIHGVCVKTSFLS-ELNVSNSLITMYAKFESMSDSMK 430

Query: 492 VVSTMPMKPSTRILS--SLVSACRIHGRLEVA-EMLAHQLIEAEPENAANYTLLSMVCS 547
           V   +  +    I+S  SL+S    +G  + A +     L+E+ P      ++LS + S
Sbjct: 431 VFEELNYR---EIISWNSLISGYAQNGLWQEALQTFLSALMESRPNEFTFGSVLSSIAS 486


>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
 gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
          Length = 805

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 194/572 (33%), Positives = 318/572 (55%), Gaps = 6/572 (1%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           F+++ L LY + L  +G+  +    PSV+++CA A      G ++H   ++   D D  +
Sbjct: 115 FFDEALCLYHRILW-AGIRPDVYTFPSVLRSCAGAMDLVR-GREVHAHVVRFDFDMDVDV 172

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
            N+LI+MY K     SA  LFD+MP RD ISWN++I+ + +N   +  LE+F  M     
Sbjct: 173 VNALITMYVKCGDVVSARMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSI 232

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
                 +  +IS C  +G+  LG Q+H+ V V  +++ ++ V  +L+ +Y    HW  A 
Sbjct: 233 DPDLMTMTSVISACELLGDERLGTQLHSYV-VRTAYDGNISVYNSLIQMYLSVGHWKEAE 291

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
            VF  M  R+ VSWT +ISGC+D+   D  ++ ++ M+  G  P  VT+  VL ACA L 
Sbjct: 292 SVFSGMECRDVVSWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLG 351

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
            L  G  +H  A   G      ++ +L+ MY +C + +  A  IF +   KDV+ W+S+I
Sbjct: 352 QLDMGMKLHELAERTGHILYVVVANSLIDMYSKC-KRIEKALEIFHQIPDKDVISWTSVI 410

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
            G   +    EA+  F +M L+  +PNSVTL++ LS+C R   L  G  +H + +KAG+ 
Sbjct: 411 NGLRINNRCFEALIFFRKMILKS-KPNSVTLISALSACARVGALMCGKEIHAHALKAGMG 469

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
           FD  + NA++++Y +CG + ++   FN +  +D  +W  L++GY   G G   ++LF  M
Sbjct: 470 FDGFLPNAILDLYVRCGRMRTALNQFN-LNEKDVGAWNILLTGYAQKGKGAMVMELFKRM 528

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
            ES + PD +T +++L AC+ +G+V E    F  +     I   ++HYAC VDLLG++GK
Sbjct: 529 VESEINPDDVTFISLLCACSRSGMVTEGLEYFQRMKVNYHITPNLKHYACVVDLLGRAGK 588

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV 545
           + +A + +  MP+KP   I  +L++ACRIH  + + E+ A  + + + E+   Y LL  +
Sbjct: 589 LNEAHEFIERMPIKPDPAIWGALLNACRIHRHVLLGELAAQHIFKQDAESIGYYILLCNL 648

Query: 546 CSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            ++SG W    +V R M+ +GL    G S +E
Sbjct: 649 YADSGKWDEVAKVRRTMKEEGLIVDPGCSWVE 680



 Score =  201 bits (511), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 115/384 (29%), Positives = 205/384 (53%), Gaps = 3/384 (0%)

Query: 65  ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG 124
           + N+L+SM+ +F    +A+ +F  M  RD  SWN ++  +T+ GF+  +L ++  +   G
Sbjct: 71  LGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAG 130

Query: 125 FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
                     ++  C+   +L  GR++HA V V   F++ V V  AL+ +Y KC   + A
Sbjct: 131 IRPDVYTFPSVLRSCAGAMDLVRGREVHAHV-VRFDFDMDVDVVNALITMYVKCGDVVSA 189

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
             +F++M  R+ +SW AMISG  ++     G++LF  M+   + P  +T+T V+ AC  L
Sbjct: 190 RMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELL 249

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
            D R G  +H Y     +D +  +  +L+ MY         A  +F   + +DVV W++I
Sbjct: 250 GDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGH-WKEAESVFSGMECRDVVSWTTI 308

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
           I G   +    +A++ +  M +    P+ VT+ ++LS+C     L  G+ +H    + G 
Sbjct: 309 ISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGH 368

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
              V + N+L++MYSKC  I  + +IF+++  +D +SWT++I+G   +    EAL  F +
Sbjct: 369 ILYVVVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRK 428

Query: 425 MQESGVEPDAITVLAILSACNHAG 448
           M     +P+++T+++ LSAC   G
Sbjct: 429 MILKS-KPNSVTLISALSACARVG 451



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 116/449 (25%), Positives = 219/449 (48%), Gaps = 9/449 (2%)

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
           ++ +    +I LC        G  +   V+      LSV +  ALL ++ +      A  
Sbjct: 31  VEEDCFVALIRLCENKRGYSEGEYVWKAVLSSLVTLLSVRLGNALLSMFVRFGDVGNAWN 90

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VF +M  R+  SW  ++ G   +  +D  + L+  +   G++P   T   VL +CA   D
Sbjct: 91  VFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAGIRPDVYTFPSVLRSCAGAMD 150

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L  G+ +H +     FD D  +  AL+ MY +C + +  AR++F++   +D + W+++I 
Sbjct: 151 LVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVV-SARMLFDKMPTRDRISWNAMIS 209

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           GY ++ +  E ++LF RMR   I+P+ +T+ +++S+C        G  +H Y+++   + 
Sbjct: 210 GYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDERLGTQLHSYVVRTAYDG 269

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           ++S+ N+L+ MY   G    +  +F+ M  RD VSWTT+ISG   +   ++AL+ +  M+
Sbjct: 270 NISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGCVDNLLPDKALETYKTME 329

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
            +G  PD +T+ ++LSAC   G +     L     +   I   +   +  +D+  K  +I
Sbjct: 330 ITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHILYVVVANS-LIDMYSKCKRI 388

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGR-LEVAEMLAHQLIEAEPENAANYTLLSMV 545
           E A ++   +P K      +S+++  RI+ R  E        +++++P +    + LS  
Sbjct: 389 EKALEIFHQIPDKDVIS-WTSVINGLRINNRCFEALIFFRKMILKSKPNSVTLISALS-A 446

Query: 546 CSESGNWLGAEEVWRVMRAKGLSKSYGFS 574
           C+  G  +  +E+     A  L    GF 
Sbjct: 447 CARVGALMCGKEI----HAHALKAGMGFD 471



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/295 (22%), Positives = 123/295 (41%), Gaps = 45/295 (15%)

Query: 311 SGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN----- 365
           SG+L +A+K  + M+  +I       +A++  C  +   S G     Y+ KA L+     
Sbjct: 11  SGNLEQALKHLASMQEVKIPVEEDCFVALIRLCENKRGYSEGE----YVWKAVLSSLVTL 66

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
             V +GNAL++M+ + G + ++  +F  M  RD  SW  L+ GY   G+ +EAL L+  +
Sbjct: 67  LSVRLGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRI 126

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
             +G+ PD  T  ++L +C  A  +     +  +V++     + ++     + +  K G 
Sbjct: 127 LWAGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVR-FDFDMDVDVVNALITMYVKCGD 185

Query: 486 IEDACKVVSTMPMK----------------------------------PSTRILSSLVSA 511
           +  A  +   MP +                                  P    ++S++SA
Sbjct: 186 VVSARMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISA 245

Query: 512 CRIHGRLEVAEMLAHQLIE-AEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAK 565
           C + G   +   L   ++  A   N + Y  L  +    G+W  AE V+  M  +
Sbjct: 246 CELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECR 300


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1047

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 188/570 (32%), Positives = 314/570 (55%), Gaps = 4/570 (0%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E+ + L+K+ +   GL  ++  L S++ AC+   T    G QLH    K G  ++  I  
Sbjct: 354 EKAMELFKR-MQLDGLEPDSNTLASLVVACSSDGT-LFSGQQLHAYTTKLGFASNDKIEG 411

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +L+++YAK S  E+A   F E    + + WN ++  +        S  +FR+M +   V 
Sbjct: 412 ALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVP 471

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
                  I+  C ++G+LELG QIH+ +I   SF+L+ +V + L+D+Y+K      A  +
Sbjct: 472 NQYTYPSILKTCIRLGDLELGEQIHSQII-KTSFQLNAYVCSVLIDMYAKLGKLDTAWDI 530

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
             +   ++ VSWT MI+G       D  +  FR M   G++   V LT  + ACA L+ L
Sbjct: 531 LIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQAL 590

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
           + G+ IH  A   GF  D     AL+ +Y +C   +  A + FE+T+  D + W++++ G
Sbjct: 591 KEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGN-IEEAYLAFEQTEAGDNIAWNALVSG 649

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
           + QSG+  EA+++F+RM  E I+ N+ T  + + + +  + +  G  VH  I K G + +
Sbjct: 650 FQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSE 709

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
             + NA+++MY+KCGSI+ + + F E++ ++ VSW  +I+ Y  HG+G EAL  F +M  
Sbjct: 710 TEVCNAIISMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIH 769

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487
           S V P+ +T++ +LSAC+H GLV +    F ++  E  +A   EHY C VD+L ++G + 
Sbjct: 770 SNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLLS 829

Query: 488 DACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCS 547
            A   +  MP++P   +  +L+SAC +H  +E+ E  AH L+E EPE++A Y LLS + +
Sbjct: 830 RAKDFILEMPIEPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYA 889

Query: 548 ESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
               W   +   + M+ KG+ K  G S IE
Sbjct: 890 VCRKWDARDLTRQKMKEKGVKKEPGQSWIE 919



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 136/475 (28%), Positives = 223/475 (46%), Gaps = 8/475 (1%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G+  N   L  +++ C         G +LH   LK G D +  +S  L+  Y      + 
Sbjct: 62  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDG 121

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A ++FDEMP R   +WN +I          +   +F  M            +G++  C  
Sbjct: 122 ALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRG 181

Query: 142 IG-ELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
                ++  QIHA +I  G    S  V   L+DLYS+      A RVF+ + +++  SW 
Sbjct: 182 GSVAFDVVEQIHARIIYQG-LGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWV 240

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
           AMISG   ++     I LF  M   G+ PT    + VL AC ++  L  G+ +HG     
Sbjct: 241 AMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKL 300

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
           GF  D ++  AL+ +Y     +L  A  IF     +D V ++++I G SQ G   +AM+L
Sbjct: 301 GFSSDTYVCNALVSLYFHLG-SLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMEL 359

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
           F RM+L+ +EP+S TL +++ +C+    L  G  +H Y  K G   +  I  AL+N+Y+K
Sbjct: 360 FKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAK 419

Query: 381 CGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
           C  I ++   F E    + V W  ++  YG       + ++F +MQ   + P+  T  +I
Sbjct: 420 CSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSI 479

Query: 441 LSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYV--DLLGKSGKIEDACKVV 493
           L  C   G ++  E + + ++   K +  +  Y C V  D+  K GK++ A  ++
Sbjct: 480 LKTCIRLGDLELGEQIHSQII---KTSFQLNAYVCSVLIDMYAKLGKLDTAWDIL 531



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 121/427 (28%), Positives = 199/427 (46%), Gaps = 36/427 (8%)

Query: 123 CGFVLKAELLAGIISLCSQI-GELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
           CG     + L  ++  C +  G L+ GR++H+ ++  G F+ +  +S  LLD Y      
Sbjct: 61  CGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLG-FDNNACLSEKLLDFYLFKGDL 119

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             AL+VF++M  R   +W  MI              LF  M  E V P   T + VL AC
Sbjct: 120 DGALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEAC 179

Query: 242 AELRDLRNG-------KAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTK 294
                 R G       + IH      G      +   L+ +Y      +  AR +F+   
Sbjct: 180 ------RGGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSR-NGFVDRARRVFDGLY 232

Query: 295 VKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG 354
           +KD   W ++I G S++    EA++LF  M +  I P      ++LS+C +   L  G  
Sbjct: 233 LKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQ 292

Query: 355 VHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGY 414
           +H  ++K G + D  + NAL+++Y   GS+ S+  IF+ M+ RD V++ TLI+G    GY
Sbjct: 293 LHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGY 352

Query: 415 GEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK-----EKKIALA 469
           GE+A++LF  MQ  G+EPD+ T+ +++ AC+  G +   + L     K       KI  A
Sbjct: 353 GEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGA 412

Query: 470 IEHYACYVDLLGKSGKIEDAC---------KVVSTMPMKPSTRILSSLVSACRIHGRLEV 520
           +      ++L  K   IE A           VV    M  +  +L  L ++ RI  ++++
Sbjct: 413 L------LNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQI 466

Query: 521 AEMLAHQ 527
            E++ +Q
Sbjct: 467 EEIVPNQ 473


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 178/518 (34%), Positives = 299/518 (57%), Gaps = 4/518 (0%)

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D V++  +I+MY+    P  +  +FD++  ++   WN+I++ +T+N  +  ++ +F E+ 
Sbjct: 140 DFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELI 199

Query: 122 -LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
            +         L  +I  C+ + +L LG+ IH +          VFV  AL+ +Y KC  
Sbjct: 200 SVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMA-TKMDLVSDVFVGNALIAMYGKCGL 258

Query: 181 WLIAL-RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLL 239
              A+ RVF+ M  +   SW A++ G   + +    +DL+  M   G+ P   T+  +LL
Sbjct: 259 VEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLL 318

Query: 240 ACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVV 299
           AC+ ++ L  G+ IHG+A   G   D  +  +L+ +Y  C +    A+++F+  + + +V
Sbjct: 319 ACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPF-AAQVLFDGMEHRSLV 377

Query: 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
            W+ +I GYSQ+G   EA+ LF +M  + I+P  + ++ +  +C++ S L  G  +HC+ 
Sbjct: 378 SWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFA 437

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEAL 419
           +KA L  D+ + +++++MY+K G I  S +IF+ +  +D  SW  +I+GYG HG G+EAL
Sbjct: 438 LKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEAL 497

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479
           +LF +M   G++PD  T   IL AC+HAGLV++    FN ++    I   +EHY C VD+
Sbjct: 498 ELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDM 557

Query: 480 LGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANY 539
           LG++G+I+DA +++  MP  P +RI SSL+S+CRIHG L + E +A++L+E EPE   NY
Sbjct: 558 LGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENY 617

Query: 540 TLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            L+S + + SG W     V   M+  GL K  G S IE
Sbjct: 618 VLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIE 655



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 110/425 (25%), Positives = 212/425 (49%), Gaps = 4/425 (0%)

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
           ++E +  ++  C Q  ++E+GR++H +V     F     ++T ++ +YS C     +  V
Sbjct: 104 RSEAMGVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMV 163

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM-QREGVKPTRVTLTIVLLACAELRD 246
           F+++  +N   W A++S    ++ ++  + +F  +      KP   TL  V+ ACA L D
Sbjct: 164 FDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLD 223

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L  G+ IHG A       D  +  AL+ MY +C       + +F+    K V  W++++ 
Sbjct: 224 LGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLC 283

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           GY+Q+ D  +A+ L+ +M    ++P+  T+ ++L +C+R   L +G  +H + ++ GL  
Sbjct: 284 GYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAV 343

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           D  IG +L+++Y  CG   ++  +F+ M  R  VSW  +I+GY  +G  +EA+ LF +M 
Sbjct: 344 DPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQML 403

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
             G++P  I ++ +  AC+    ++  + L    +K   +   I   +  +D+  K G I
Sbjct: 404 SDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALK-AHLTEDIFVSSSIIDMYAKGGCI 462

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGR-LEVAEMLAHQLIEAEPENAANYTLLSMV 545
             + ++   +  K      + +++   IHGR  E  E+    L      +   +T + M 
Sbjct: 463 GLSQRIFDRLREKDVAS-WNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMA 521

Query: 546 CSESG 550
           CS +G
Sbjct: 522 CSHAG 526



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 134/495 (27%), Positives = 235/495 (47%), Gaps = 45/495 (9%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
            +E  + ++ + +  +    +   LP VIKACA        G  +H  A K    +D  +
Sbjct: 187 LFEDAMSIFSELISVTEHKPDNFTLPCVIKACA-GLLDLGLGQIIHGMATKMDLVSDVFV 245

Query: 66  SNSLISMYAKFSKPESAYQ-LFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG 124
            N+LI+MY K    E A + +FD M  +   SWN+++  + QN    ++L+++ +M   G
Sbjct: 246 GNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSG 305

Query: 125 FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
                  +  ++  CS++  L  G +IH   + +G   +  F+  +LL LY  C     A
Sbjct: 306 LDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNG-LAVDPFIGISLLSLYICCGKPFAA 364

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
             +F+ M  R+ VSW  MI+G   +   D  I+LFR M  +G++P  + +  V  AC++L
Sbjct: 365 QVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQL 424

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
             LR GK +H +A       D  +S++++ MY +    +  ++ IF+R + KDV  W+ I
Sbjct: 425 SALRLGKELHCFALKAHLTEDIFVSSSIIDMYAK-GGCIGLSQRIFDRLREKDVASWNVI 483

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
           I GY   G   EA++LF +M    ++P+  T   IL +C+           H  +++ GL
Sbjct: 484 IAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACS-----------HAGLVEDGL 532

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
            +     N ++N+          H I  ++       +T ++   G  G  ++AL+L  E
Sbjct: 533 EY----FNQMLNL----------HNIEPKLE-----HYTCVVDMLGRAGRIDDALRLIEE 573

Query: 425 MQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLLG 481
           M     +PD+    ++LS+C   G +   E + N +++   EK      E+Y    +L  
Sbjct: 574 MPG---DPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKP-----ENYVLISNLFA 625

Query: 482 KSGKIEDACKVVSTM 496
            SGK +D  +V   M
Sbjct: 626 GSGKWDDVRRVRGRM 640


>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 187/561 (33%), Positives = 313/561 (55%), Gaps = 3/561 (0%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           E+  S +  N+     V+  CA ++     G QLH  A+  G + D  ++N+L++MY+K 
Sbjct: 149 EMRHSEIKPNSVTFACVLSVCA-SEAMLDLGTQLHGIAVSCGLELDSPVANTLLAMYSKC 207

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
              ++A +LFD  P  D +SWN II+ + QNG    +  +FR M   G    +   A  +
Sbjct: 208 QCLQAARKLFDTSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFL 267

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
              +++  L+  ++IH  +I   +  L VF+ +AL+D+Y KC    +A ++  Q    + 
Sbjct: 268 PCVNELLSLKHCKEIHGYIIRH-AVVLDVFLKSALIDIYFKCRDVEMAQKILCQSSSFDT 326

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           V  T MISG + +      ++ FR + +E +KPT VT + +  A A L  L  GK +HG 
Sbjct: 327 VVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGS 386

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
                 D   H+ +A++ MY +C   L  A  +F R   KD + W+S+I   SQ+G   E
Sbjct: 387 IIKTKLDEKCHVGSAILDMYAKCGR-LDLACRVFNRITEKDAICWNSMITSCSQNGRPGE 445

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
           A+ LF +M +E    + V++   LS+C     L +G  +H  ++K  L  D+   ++L++
Sbjct: 446 AINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLID 505

Query: 377 MYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAIT 436
           MY+KCG++  S ++F+ M  R+ VSW ++IS YG HG  +E L LF EM  +G++PD +T
Sbjct: 506 MYAKCGNLNFSRRVFDRMQERNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVT 565

Query: 437 VLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
            L I+SAC HAG V E    ++ + +E  I   +EHYAC  D+ G++G++++A + +++M
Sbjct: 566 FLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLDEAFETINSM 625

Query: 497 PMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAE 556
           P  P   +  +L+ AC IHG +E+AE+ +  L + +P N+  Y LL+ V + +G W    
Sbjct: 626 PFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPLNSGYYVLLANVQAGAGKWRKVL 685

Query: 557 EVWRVMRAKGLSKSYGFSRIE 577
           +V  +M+ +G+ K  G+S IE
Sbjct: 686 KVRSIMKERGVRKVPGYSWIE 706



 Score =  214 bits (546), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 145/540 (26%), Positives = 271/540 (50%), Gaps = 8/540 (1%)

Query: 13  LYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISM 72
           L+  ++  +G+  +    P V+KAC   ++ +  G  +H T    G   D  + +SLI +
Sbjct: 44  LFYLKMLGAGVSPDKYTFPYVVKACCGLKSVK-MGKIVHETVNLMGLKEDVFVGSSLIKL 102

Query: 73  YAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELL 132
           YA+      A  LFD +P +D++ WN ++N + +NG    ++++F EM        +   
Sbjct: 103 YAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTF 162

Query: 133 AGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV 192
           A ++S+C+    L+LG Q+H + +  G  EL   V+  LL +YSKC     A ++F+   
Sbjct: 163 ACVLSVCASEAMLDLGTQLHGIAVSCG-LELDSPVANTLLAMYSKCQCLQAARKLFDTSP 221

Query: 193 IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKA 252
             + VSW  +ISG + +        LFR M   G+KP  +T    L    EL  L++ K 
Sbjct: 222 QSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKE 281

Query: 253 IHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSG 312
           IHGY        D  L +AL+ +Y +C +     +I+ + +   D V+ +++I GY  +G
Sbjct: 282 IHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKILCQSSSF-DTVVCTTMISGYVLNG 340

Query: 313 DLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN 372
              EA++ F  +  ER++P SVT  +I  +    + L+ G  +H  I+K  L+    +G+
Sbjct: 341 KNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGS 400

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
           A+++MY+KCG +  + ++FN +  +D + W ++I+    +G   EA+ LF +M   G   
Sbjct: 401 AILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRY 460

Query: 433 DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKV 492
           D +++   LSAC +   +   + + + +M +  +   +   +  +D+  K G +  + +V
Sbjct: 461 DCVSISGALSACANLPALHYGKEI-HGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRV 519

Query: 493 VSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLSMVCSESG 550
              M  +      +S++SA   HG L+    L H+++    +P++     ++S  C  +G
Sbjct: 520 FDRMQERNEVS-WNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIIS-ACGHAG 577



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 127/457 (27%), Positives = 230/457 (50%), Gaps = 4/457 (0%)

Query: 72  MYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAEL 131
           MY +    + A  LF  +    T +WN +I  FT  G +  +L  + +M   G       
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 132 LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM 191
              ++  C  +  +++G+ +H  V + G  E  VFV ++L+ LY++  H   A  +F+ +
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMGLKE-DVFVGSSLIKLYAENGHLSDAQYLFDNI 119

Query: 192 VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGK 251
             ++ V W  M++G + + +    I +F  M+   +KP  VT   VL  CA    L  G 
Sbjct: 120 PQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGT 179

Query: 252 AIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQS 311
            +HG A  CG + D  ++  L+ MY +C + L  AR +F+ +   D+V W+ II GY Q+
Sbjct: 180 QLHGIAVSCGLELDSPVANTLLAMYSKC-QCLQAARKLFDTSPQSDLVSWNGIISGYVQN 238

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
           G + EA  LF  M    I+P+S+T  + L        L H   +H YI++  +  DV + 
Sbjct: 239 GLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLK 298

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
           +AL+++Y KC  +  + +I  + ++ D V  TT+ISGY  +G  +EAL+ F  + +  ++
Sbjct: 299 SALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMK 358

Query: 432 PDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACK 491
           P ++T  +I  A      +   + L  +++K  K+       +  +D+  K G+++ AC+
Sbjct: 359 PTSVTFSSIFPAFAGLAALNLGKELHGSIIK-TKLDEKCHVGSAILDMYAKCGRLDLACR 417

Query: 492 VVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
           V + +  K +    +S++++C  +GR   A  L  Q+
Sbjct: 418 VFNRITEKDAI-CWNSMITSCSQNGRPGEAINLFRQM 453


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 179/533 (33%), Positives = 301/533 (56%), Gaps = 8/533 (1%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           GLQ+H   +K G +    + NSLIS+Y++      A  +FD+M  RD ++WNS+I  + +
Sbjct: 213 GLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVR 272

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           NG  +   E+F +M L G        A +I  C+ + EL L + +    +  G F     
Sbjct: 273 NGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSG-FTTDQI 331

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVI-RNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
           V TAL+   SKC     AL +F  M   +N VSWTAMISGC+ +   D  ++LF  M+RE
Sbjct: 332 VITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRRE 391

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
           GVKP   T + +L     +        +H       ++    +  AL+  Y +    +  
Sbjct: 392 GVKPNHFTYSAILTVHYPVF----VSEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDA 447

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
            ++ FE  + KD++ WS+++ GY+Q+G+  EA KLF ++  E I+PN  T  +++++C  
Sbjct: 448 VKV-FEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACAS 506

Query: 346 QSFLS-HGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
            +  +  G   H Y +K  LN  + + +AL+ MY+K G+I S+H++F     RD VSW +
Sbjct: 507 PTAAAEQGKQFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNS 566

Query: 405 LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK 464
           +ISGY  HG  ++AL++F EMQ+  ++ DA+T + +++AC HAGLV++ +  FN+++ + 
Sbjct: 567 MISGYSQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDH 626

Query: 465 KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEML 524
            I   ++HY+C +DL  ++G +E A  +++ MP  P   +  +L+ A R+H  +E+ E+ 
Sbjct: 627 HINPTMKHYSCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRTLLGAARVHRNVELGELA 686

Query: 525 AHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           A +LI  +PE++A Y LLS + + +GNW     V ++M  + + K  G+S IE
Sbjct: 687 AEKLISLQPEDSAAYVLLSNMYAAAGNWQERTNVRKLMDKRKVKKEPGYSWIE 739



 Score =  222 bits (565), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 150/514 (29%), Positives = 260/514 (50%), Gaps = 8/514 (1%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           ++ L+L+   LH S L  + + L  V   CA        G Q+HC  +K G      +  
Sbjct: 75  KEALNLFVSLLH-SSLQPDESTLSCVFNICA-GSLDGKLGRQVHCQCVKFGLVDHVSVGT 132

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           SL+ MY K        ++FDEM  R+ +SW S++  ++ NG Y    E+F +M   G + 
Sbjct: 133 SLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLP 192

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
               ++ +I+     G + +G Q+HA+V+  G FE ++ V  +L+ LYS+      A  V
Sbjct: 193 NRYTVSTVIAALVNEGVVGIGLQVHAMVVKHG-FEEAIPVFNSLISLYSRLGMLRDARDV 251

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F++M IR+ V+W +MI+G + +       ++F  MQ  GVKPT +T   V+ +CA LR+L
Sbjct: 252 FDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLREL 311

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
              K +   A   GF  D  +  ALM    +C E      +     + K+VV W+++I G
Sbjct: 312 ALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISG 371

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
             Q+G   +A+ LFS+MR E ++PN  T  AIL +     F+S    +H  ++K      
Sbjct: 372 CLQNGGNDQAVNLFSQMRREGVKPNHFTYSAIL-TVHYPVFVSE---MHAEVIKTNYERS 427

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
            S+G AL++ Y K G+   + ++F  + A+D ++W+ +++GY   G  EEA +LF ++ +
Sbjct: 428 SSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIK 487

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487
            G++P+  T  ++++AC       E    F+    + ++  A+   +  V +  K G I+
Sbjct: 488 EGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLNNALCVSSALVTMYAKRGNID 547

Query: 488 DACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA 521
            A +V      +      +S++S    HG+ + A
Sbjct: 548 SAHEVFKRQKERDLVS-WNSMISGYSQHGQAKKA 580



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 131/457 (28%), Positives = 231/457 (50%), Gaps = 15/457 (3%)

Query: 79  PESAYQLFDEMPYRDTI--SWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
           P  A+ LFD++P+R T     N ++  ++++     +L +F  +           L+ + 
Sbjct: 41  PHIAHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVF 100

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
           ++C+   + +LGRQ+H   +  G  +  V V T+L+D+Y K  +     RVF++M  RN 
Sbjct: 101 NICAGSLDGKLGRQVHCQCVKFGLVD-HVSVGTSLVDMYMKTENVNDGRRVFDEMGERNV 159

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           VSWT++++G   +  Y    +LF  MQ EGV P R T++ V+ A      +  G  +H  
Sbjct: 160 VSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAM 219

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
               GF+    +  +L+ +Y      L  AR +F++ +++D V W+S+I GY ++G   E
Sbjct: 220 VVKHGFEEAIPVFNSLISLYSRLG-MLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLE 278

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
             ++F++M+L  ++P  +T  +++ SC     L+    + C  +K+G   D  +  ALM 
Sbjct: 279 VFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMV 338

Query: 377 MYSKCGSITSSHQIFNEM-AARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
             SKC  +  +  +F+ M   ++ VSWT +ISG   +G  ++A+ LF +M+  GV+P+  
Sbjct: 339 ALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHF 398

Query: 436 TVLAILSACNHAGLVKE--AETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVV 493
           T  AIL+  ++   V E  AE +  N  +   +  A+      +D   K G   DA KV 
Sbjct: 399 TYSAILTV-HYPVFVSEMHAEVIKTNYERSSSVGTAL------LDAYVKLGNTIDAVKVF 451

Query: 494 STMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE 530
             +  K      S++++     G  E A  L HQLI+
Sbjct: 452 EIIEAK-DLMAWSAMLAGYAQTGETEEAAKLFHQLIK 487



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 103/209 (49%), Gaps = 2/209 (0%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E+   L+ Q L   G+  N     SVI ACA        G Q H  A+K   +    +S+
Sbjct: 476 EEAAKLFHQ-LIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLNNALCVSS 534

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +L++MYAK    +SA+++F     RD +SWNS+I+ ++Q+G   ++LE+F EM      +
Sbjct: 535 ALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMDV 594

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
            A    G+I+ C+  G +E G++    +I D     ++   + ++DLYS+      A+ +
Sbjct: 595 DAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMIDLYSRAGMLEKAMGI 654

Query: 188 FEQMVIRNEVS-WTAMISGCIDSQNYDTG 215
             +M      + W  ++      +N + G
Sbjct: 655 INEMPFPPGATVWRTLLGAARVHRNVELG 683


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 188/558 (33%), Positives = 315/558 (56%), Gaps = 6/558 (1%)

Query: 23  LYSNTAILPSVIK---ACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKP 79
           L  NT + P       A A     +H  L LH  ++  G  ++  + ++L+ +Y KFS+ 
Sbjct: 101 LRRNTNLSPDNFTYAFAVAACSNDKHLML-LHAHSIIDGYGSNVFVGSALVDLYCKFSRV 159

Query: 80  ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLC 139
             A ++FD MP RDT+ WN++IN   +N  +  S+++FREM   G  + +  +  ++   
Sbjct: 160 VYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAA 219

Query: 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSW 199
           +++ EL++G  I  L +  G F    +V T L+ LYSKC     A  +F ++   + +++
Sbjct: 220 AELQELKVGMGIQCLALKIG-FGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAY 278

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
            AMISG   +   +  + LFR +   G + +  T+  ++   +    L    +IHG+   
Sbjct: 279 NAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVK 338

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
            G   +  +S A   +Y +  E +  AR +F+ +  K VV W+++I GY+Q+G    A+ 
Sbjct: 339 SGIILNPTVSTAFTAIYNKLNE-IDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAIS 397

Query: 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           LF  M      PN+VT+  ILS+C +   LS G  VH  I    L  ++ +  AL++MY+
Sbjct: 398 LFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKWVHHLIKSENLEPNIYVSTALVDMYA 457

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           KCG+I+ + Q+F+ M+ ++ V+W T+I GYG HGYG EAL+L+ EM   G  P A+T L+
Sbjct: 458 KCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLS 517

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           +L AC+HAGLV E E +F+N++ + +I   IEHYAC VD+LG+SG++E A + +  MP++
Sbjct: 518 VLYACSHAGLVGEGEEIFHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVE 577

Query: 500 PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVW 559
           P   +  +L+ AC IH   ++A + + +L E +P +   Y LLS + S   N+  A  + 
Sbjct: 578 PGPAVWGTLLGACMIHKDTDIARLASERLFELDPGSVGYYVLLSNIYSVERNFPKAASIR 637

Query: 560 RVMRAKGLSKSYGFSRIE 577
           +V++ + L+KS G + IE
Sbjct: 638 QVVKKRKLAKSPGCTLIE 655


>gi|255572205|ref|XP_002527042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533604|gb|EEF35342.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 520

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 183/491 (37%), Positives = 296/491 (60%), Gaps = 6/491 (1%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           Y + L L+ + L    L  ++   PSV+KAC        +G  +H   +KSG   D V++
Sbjct: 10  YTEALELFDRLLQYPYLQPDSFTYPSVLKACG-GLGRYDYGRMIHTHLIKSGFVFDIVVA 68

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           +SL+S++AK +    A QLFDEMP RD   WN++I+C+ Q+G   ++LEMF +M   GF 
Sbjct: 69  SSLVSLHAKCNLFGYAIQLFDEMPERDVACWNTVISCYYQDGKAEKALEMFGKMRDSGFE 128

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
             +  L  +IS C+++ +LE G++IH  V+ +G   L  FV +AL+D+Y K     +A  
Sbjct: 129 PNSVTLTTVISSCARLLDLERGKEIHREVMQNGMV-LDGFVGSALVDMYGKFGCLDLAKD 187

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           +FEQM  +  V+W ++I+G   + +    I+LF  M  EG KPT  TL+ +LLAC+    
Sbjct: 188 IFEQMPKKTLVAWNSLIAGYSSAADSKECIELFWRMNMEGTKPTVTTLSSILLACSRAAH 247

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L++G+ IHGYA       D  +S+ L+ +Y +C + +  A  IF      +VV+W+ +I 
Sbjct: 248 LQHGRFIHGYAVRNRVQLDIFVSSGLIELYFKCGK-VQSAENIFYMLPKANVVLWNVMIS 306

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           GY   GD  +A+ ++  M++  ++P++VT  +ILS+C++ + L  G  +H  I K  L  
Sbjct: 307 GYVTIGDYVKALDMYDEMKIASVKPDAVTFSSILSACSQLAALEKGKEIHNCITKNDLET 366

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           +  +  AL++MY+KCG++  +  +FN++  RD +SWT++IS YG HG   EAL+LF E+Q
Sbjct: 367 NEIVMGALLDMYAKCGAVDEALSVFNKLPERDLLSWTSIISAYGSHGQALEALRLFEELQ 426

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
           +S   PDA+T LA+LSAC+HAGLV +    FN ++    I   +EHY+C +DLL   G+I
Sbjct: 427 QSKASPDAVTFLAVLSACSHAGLVDKGYYYFNQMITNYGIKPGLEHYSCLIDLL---GRI 483

Query: 487 EDACKVVSTMP 497
           ++  + ++ +P
Sbjct: 484 QEQSQELNEIP 494


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 176/531 (33%), Positives = 305/531 (57%), Gaps = 2/531 (0%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G ++H + + SG   +      +++MYAK  +   AY +FD MP RD + WN++I+ + Q
Sbjct: 49  GKEIHGSVITSGFSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQ 108

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           NGF   +L +   M   G    +  +  I+   +    L +G  +H  V+  G FE  V 
Sbjct: 109 NGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAG-FESLVN 167

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           VSTAL+D+YSKC    IA  +F+ M  R  VSW +MI G + S + +  + +F+ M  EG
Sbjct: 168 VSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEG 227

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           V+PT VT+   L ACA+L DL  GK +H        D D  +  +L+ MY +C + +  A
Sbjct: 228 VQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKC-KRVDIA 286

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
             IF+  + K +V W+++I GY+Q+G ++EA+  F  M+   I+P+S T+++++ +    
Sbjct: 287 ADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAEL 346

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
           S       +H  +++  L+ +V +  AL++MY+KCG+I ++ ++F+ M AR  ++W  +I
Sbjct: 347 SIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMI 406

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
            GYG HG G+ +++LF EM++  ++P+ IT L  LSAC+H+GLV+E    F ++ K+  I
Sbjct: 407 DGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGI 466

Query: 467 ALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAH 526
              ++HY   VDLLG++G++  A   +  MP+KP   +  +++ AC+IH  +++ E  A 
Sbjct: 467 EPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLGEKAAF 526

Query: 527 QLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           ++ +  P++   + LL+ + + +  W    +V  +M   GL K+ G S +E
Sbjct: 527 EIFKLNPDDGGYHVLLANIYATASMWGKVAKVRTIMEKSGLQKTPGCSLVE 577



 Score =  208 bits (529), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 121/365 (33%), Positives = 199/365 (54%), Gaps = 9/365 (2%)

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           ++ LC    +L+ G++IH  VI  G F  ++F  T ++++Y+KC     A  +F++M  R
Sbjct: 36  LLKLCGDNSDLKRGKEIHGSVITSG-FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPER 94

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
           + V W  MISG   +      + L   M  EG +P  +T+  +L A A+ R LR G A+H
Sbjct: 95  DLVCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVH 154

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
           GY    GF+   ++S AL+ MY +C  ++  AR+IF+    + VV W+S+I GY QSGD 
Sbjct: 155 GYVLRAGFESLVNVSTALVDMYSKCG-SVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDA 213

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
             AM +F +M  E ++P +VT++  L +C     L  G  VH  + +  L+ DVS+ N+L
Sbjct: 214 EGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSL 273

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           ++MYSKC  +  +  IF  +  +  VSW  +I GY  +G   EAL  F EMQ   ++PD+
Sbjct: 274 ISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDS 333

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLLGKSGKIEDACK 491
            T+++++ A     + ++A+ +   V++   +K + +        VD+  K G I  A K
Sbjct: 334 FTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFV----MTALVDMYAKCGAIHTARK 389

Query: 492 VVSTM 496
           +   M
Sbjct: 390 LFDMM 394



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 85/247 (34%), Positives = 141/247 (57%), Gaps = 1/247 (0%)

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           M+ G   S + D+ +  F  M+ + V+P     T +L  C +  DL+ GK IHG     G
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
           F ++      +++MY +C + ++ A  +F+R   +D+V W+++I GY+Q+G    A+ L 
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQ-INDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLV 119

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
            RM  E   P+S+T+++IL +      L  G+ VH Y+++AG    V++  AL++MYSKC
Sbjct: 120 LRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKC 179

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
           GS++ +  IF+ M  R  VSW ++I GY   G  E A+ +F +M + GV+P  +TV+  L
Sbjct: 180 GSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGAL 239

Query: 442 SACNHAG 448
            AC   G
Sbjct: 240 HACADLG 246



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 126/250 (50%), Gaps = 5/250 (2%)

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           +++GY++S  L  A+  FSRM+ + + P       +L  C   S L  G  +H  ++ +G
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
            ++++     ++NMY+KC  I  ++ +F+ M  RD V W T+ISGY  +G+ + AL L L
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS 483
            M E G  PD+IT+++IL A     L++    +   V++    +L +      VD+  K 
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESL-VNVSTALVDMYSKC 179

Query: 484 GKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLS 543
           G +  A  +   M  +      +S++      G  E A ++  ++++ E     N T++ 
Sbjct: 180 GSVSIARVIFDGMDHRTVVS-WNSMIDGYVQSGDAEGAMLIFQKMLD-EGVQPTNVTVMG 237

Query: 544 MV--CSESGN 551
            +  C++ G+
Sbjct: 238 ALHACADLGD 247


>gi|255559709|ref|XP_002520874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540005|gb|EEF41583.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 833

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 182/534 (34%), Positives = 309/534 (57%), Gaps = 6/534 (1%)

Query: 46  FGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT 105
           FG Q+HC A+K G + DP +  SL++MY K    ESA ++F+E+P ++   WN++I+ + 
Sbjct: 259 FGKQVHCDAIKVGFEDDPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALISAYV 318

Query: 106 QNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSV 165
            NG+   +L ++++M LC  +  +  +  +++  S  G  +LGR IH   IV    + S+
Sbjct: 319 GNGYAYDALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLGRLIHT-EIVKRPLQSSI 377

Query: 166 FVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
            + +ALL +YSK      A  +F  M  R+ V+W ++ISG   ++ Y   +D FRAM+ +
Sbjct: 378 TIQSALLTMYSKFGDSNYANSIFSTMKERDVVAWGSVISGFCQNRKYKEALDFFRAMEAD 437

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
            VKP    +  ++ AC  L  +  G  IHG+    G   D  ++++L+ MY   ++   P
Sbjct: 438 LVKPDSDIMASIISACTGLEKVDLGCTIHGFVIKSGLQLDVFVASSLLDMY---SKFGFP 494

Query: 286 ARI--IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC 343
            R   IF    +K++V W+SII  Y ++     ++ LFS++    + P+SV+  ++L++ 
Sbjct: 495 ERAGNIFSDMPLKNLVAWNSIISCYCRNNLPDLSINLFSQVLRNDLYPDSVSFTSVLAAI 554

Query: 344 TRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWT 403
           +  + L  G  VH Y+++  + FD+ + N L++MY KCG +  +  IF  ++ ++ V+W 
Sbjct: 555 SSVAALLKGKSVHGYLVRLWIPFDLQVENTLIDMYIKCGLLKYAQHIFERISEKNLVAWN 614

Query: 404 TLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKE 463
           ++I GYG HG   +A++LF EM+ SG++PD +T L++LS+CNH+GL++E   LF  +  +
Sbjct: 615 SMIGGYGSHGECSKAIELFDEMRSSGIKPDDVTFLSLLSSCNHSGLIEEGLHLFEMMKMK 674

Query: 464 KKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEM 523
             I   +EHY   VDL G++G + DA   V  MP++P   I  SL+ +C+IH  LE+ EM
Sbjct: 675 FGIEPRMEHYVNIVDLYGRAGCLGDAYSFVKNMPVEPDRSIWLSLLCSCKIHLNLELGEM 734

Query: 524 LAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +A++L+  EP   +NY  L  +  E+  W     +   M+ KGL K+ G S IE
Sbjct: 735 VANKLLNMEPSKGSNYVQLLNLYGEAELWDRTANLRASMKEKGLKKTPGCSWIE 788



 Score =  204 bits (520), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 142/505 (28%), Positives = 253/505 (50%), Gaps = 34/505 (6%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           +V +  Y + L LY +    S +Y+     PS++KACA + ++  +G  +H + + +G  
Sbjct: 31  LVQQRQYIEALKLYTK----SPVYTTRFTYPSLLKACA-SLSNLQYGKTIHSSIITTGLH 85

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMP-----YRDTISWNSIINCFTQNGFYVRSLE 115
           +D  I++SLI++Y K      A ++FD++P       D   WNSII+ + + G     + 
Sbjct: 86  SDQYITSSLINIYVKCGTFTDAVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMV 145

Query: 116 MFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLY 175
            F  M   G+                    + G+QIH+  IV        F+ TAL+D Y
Sbjct: 146 QFGRMQSSGY--------------------KEGKQIHSY-IVRNMLNFDPFLETALIDTY 184

Query: 176 SKCHHWLIALRVFEQMVIR-NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTL 234
            KC     A  +F+++  R N V+W  MI G  ++  ++  ++ +   + E VK    + 
Sbjct: 185 FKCGRPTEARYLFKKLKDRSNIVAWNVMIGGFGENGLWENSLEYYLLAKTENVKVVSSSF 244

Query: 235 TIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTK 294
           T  L AC +   +  GK +H  A   GF+ D ++  +L+ MY +C + +  A  +F    
Sbjct: 245 TCTLSACGQGEFVSFGKQVHCDAIKVGFEDDPYVHTSLLTMYGKC-QMIESAEKVFNEVP 303

Query: 295 VKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG 354
            K++ +W+++I  Y  +G   +A++++ +M+L  +  +S T+L +L+S +       G  
Sbjct: 304 DKEIELWNALISAYVGNGYAYDALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLGRL 363

Query: 355 VHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGY 414
           +H  I+K  L   ++I +AL+ MYSK G    ++ IF+ M  RD V+W ++ISG+  +  
Sbjct: 364 IHTEIVKRPLQSSITIQSALLTMYSKFGDSNYANSIFSTMKERDVVAWGSVISGFCQNRK 423

Query: 415 GEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYA 474
            +EAL  F  M+   V+PD+  + +I+SAC     V    T+   V+K   + L +   +
Sbjct: 424 YKEALDFFRAMEADLVKPDSDIMASIISACTGLEKVDLGCTIHGFVIKS-GLQLDVFVAS 482

Query: 475 CYVDLLGKSGKIEDACKVVSTMPMK 499
             +D+  K G  E A  + S MP+K
Sbjct: 483 SLLDMYSKFGFPERAGNIFSDMPLK 507



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 112/454 (24%), Positives = 210/454 (46%), Gaps = 70/454 (15%)

Query: 101 INCFTQNGFYVRSLEMFRE--MYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVD 158
           I    Q   Y+ +L+++ +  +Y   F   + L A     C+ +  L+ G+ IH+ +I  
Sbjct: 28  IKSLVQQRQYIEALKLYTKSPVYTTRFTYPSLLKA-----CASLSNLQYGKTIHSSIITT 82

Query: 159 GSFELSVFVSTALLDLYSKCHHWLIALRVFEQM----VIRNEVS-WTAMISGCIDSQNYD 213
           G      +++++L+++Y KC  +  A++VF+Q+    V  ++V+ W ++I G       +
Sbjct: 83  G-LHSDQYITSSLINIYVKCGTFTDAVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLE 141

Query: 214 TGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALM 273
            G+  F  MQ  G K                     GK IH Y      +FD  L  AL+
Sbjct: 142 EGMVQFGRMQSSGYK--------------------EGKQIHSYIVRNMLNFDPFLETALI 181

Query: 274 HMYCECTEALHPARIIFERTKVK-DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPN 332
             Y +C      AR +F++ K + ++V W+ +I G+ ++G    +++ +   + E ++  
Sbjct: 182 DTYFKCGRPTE-ARYLFKKLKDRSNIVAWNVMIGGFGENGLWENSLEYYLLAKTENVKVV 240

Query: 333 SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFN 392
           S +    LS+C +  F+S G  VHC  +K G   D  +  +L+ MY KC  I S+ ++FN
Sbjct: 241 SSSFTCTLSACGQGEFVSFGKQVHCDAIKVGFEDDPYVHTSLLTMYGKCQMIESAEKVFN 300

Query: 393 EMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKE 452
           E+  ++   W  LIS Y  +GY  +AL+++ +M+   V  D+ T+L +L++ + AGL   
Sbjct: 301 EVPDKEIELWNALISAYVGNGYAYDALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDL 360

Query: 453 AETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP--------------- 497
              +   ++K + +  +I   +  + +  K G    A  + STM                
Sbjct: 361 GRLIHTEIVK-RPLQSSITIQSALLTMYSKFGDSNYANSIFSTMKERDVVAWGSVISGFC 419

Query: 498 -------------------MKPSTRILSSLVSAC 512
                              +KP + I++S++SAC
Sbjct: 420 QNRKYKEALDFFRAMEADLVKPDSDIMASIISAC 453


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  338 bits (866), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 189/573 (32%), Positives = 316/573 (55%), Gaps = 12/573 (2%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           ++ +HL  Q +   G+  N     +V+ A A  ++    G+Q+H   +K+G +    + N
Sbjct: 187 DEVIHLINQ-MQMEGVNPNGFTFATVLGALA-DESIIEGGVQVHAMIVKNGFEFTTFVCN 244

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +LI MY K      A  +FD M  RD+++WN +I  +   GFY+   +MF  M L G  L
Sbjct: 245 ALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKL 304

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
              +    + LCSQ  EL   +Q+H  V+ +G +E +  + TAL+  YSKC     A ++
Sbjct: 305 SRTVFCTALKLCSQQRELNFTKQLHCGVVKNG-YEFAQDIRTALMVTYSKCSSVDEAFKL 363

Query: 188 FEQM-VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA-CAELR 245
           F       N V+WTAMI G + + N    +DLF  M REGV+P   T + VL    + L 
Sbjct: 364 FSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLL 423

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
              + + I  Y     ++    ++ AL+  Y +    +  AR+ F     KD+V WS+++
Sbjct: 424 SQLHAQIIKAY-----YEKVPSVATALLDAYVKTGNVVESARV-FYSIPAKDIVAWSAML 477

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQS-FLSHGLGVHCYIMKAGL 364
            G +Q+ D  +AM++F ++  E ++PN  T  +++++C+  +  + HG  +H   +K+G 
Sbjct: 478 TGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGK 537

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
           +  + + +AL+ MYSK G+I S+ ++F     RD VSW ++I+GYG HG  ++AL++F  
Sbjct: 538 SNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQI 597

Query: 425 MQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSG 484
           MQ  G+  D +T + +L+AC HAGLV+E E  FN ++K+  I    EHY+C VDL  ++G
Sbjct: 598 MQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKXEHYSCMVDLYSRAG 657

Query: 485 KIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSM 544
             + A  +++ MP   S  I  +L++ACR+H  LE+ ++ A +L+  +P +A  Y LLS 
Sbjct: 658 MFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSN 717

Query: 545 VCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           + + +GNW     V ++M  + + K  G S IE
Sbjct: 718 IHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIE 750



 Score =  228 bits (582), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 155/560 (27%), Positives = 278/560 (49%), Gaps = 19/560 (3%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           + LHL+K +LH SGL  +   L   +K C      Q  G Q+HC +LKSG   D  +  S
Sbjct: 87  EALHLFK-DLHSSGLGVDGLTLSCALKVCG-VLFDQVVGRQVHCQSLKSGFLEDVSVGTS 144

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           L+ MY K    E    +FDEM  ++ +SW S+++ + +NG     + +  +M + G    
Sbjct: 145 LVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPN 204

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
               A ++   +    +E G Q+HA+++ +G FE + FV  AL+ +Y K      A  VF
Sbjct: 205 GFTFATVLGALADESIIEGGVQVHAMIVKNG-FEFTTFVCNALICMYLKSEMVGDAEAVF 263

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
           + MV+R+ V+W  MI G      Y  G  +F  M+  GVK +R      L  C++ R+L 
Sbjct: 264 DSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELN 323

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
             K +H      G++F   +  ALM  Y +C+      ++        +VV W+++I G+
Sbjct: 324 FTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGF 383

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
            Q+ +  +A+ LF +M  E + PN  T   +L+     S LS    +H  I+KA      
Sbjct: 384 VQNNNNKKAVDLFCQMSREGVRPNHFTYSTVLAG-KPSSLLSQ---LHAQIIKAYYEKVP 439

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
           S+  AL++ Y K G++  S ++F  + A+D V+W+ +++G       E+A+++F+++ + 
Sbjct: 440 SVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKE 499

Query: 429 GVEPDAITVLAILSAC-NHAGLVKEAETLFNNVMKE-KKIALAIEHYACYVDLLGKSGKI 486
           GV+P+  T  ++++AC + A  V+  + +    +K  K  AL +   +  + +  K G I
Sbjct: 500 GVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVS--SALLTMYSKKGNI 557

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGR----LEVAEMLAHQLIEAEPENAANYTLL 542
           E A KV +    +      +S+++    HG     LEV +++ +Q +   P +   +  +
Sbjct: 558 ESAEKVFTRQEERDIVS-WNSMITGYGQHGDAKKALEVFQIMQNQGL---PLDDVTFIGV 613

Query: 543 SMVCSESGNWLGAEEVWRVM 562
              C+ +G     E+ + +M
Sbjct: 614 LTACTHAGLVEEGEKYFNIM 633



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 135/474 (28%), Positives = 232/474 (48%), Gaps = 8/474 (1%)

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
           S+P  A+QLFDE P +D   +N ++  F++N     +L +F++++  G  +    L+  +
Sbjct: 52  SRPRYAHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCAL 111

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
            +C  + +  +GRQ+H   +  G  E  V V T+L+D+Y K   +     +F++M I+N 
Sbjct: 112 KVCGVLFDQVVGRQVHCQSLKSGFLE-DVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNV 170

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           VSWT+++SG   +   D  I L   MQ EGV P   T   VL A A+   +  G  +H  
Sbjct: 171 VSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAM 230

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
               GF+F   +  AL+ MY + +E +  A  +F+   V+D V W+ +I GY+  G   E
Sbjct: 231 IVKNGFEFTTFVCNALICMYLK-SEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLE 289

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
             ++F RMRL  ++ +       L  C++Q  L+    +HC ++K G  F   I  ALM 
Sbjct: 290 GFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMV 349

Query: 377 MYSKCGSITSSHQIFNEM-AARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
            YSKC S+  + ++F+   AA + V+WT +I G+  +   ++A+ LF +M   GV P+  
Sbjct: 350 TYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHF 409

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           T   +L A   + L+ +          EK  ++A      YV    K+G + ++ +V  +
Sbjct: 410 TYSTVL-AGKPSSLLSQLHAQIIKAYYEKVPSVATALLDAYV----KTGNVVESARVFYS 464

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSES 549
           +P K      + L    +     +  E+    + E    N   ++ +   CS S
Sbjct: 465 IPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSS 518


>gi|224107543|ref|XP_002314516.1| predicted protein [Populus trichocarpa]
 gi|222863556|gb|EEF00687.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 195/548 (35%), Positives = 318/548 (58%), Gaps = 16/548 (2%)

Query: 42  THQHFGL--QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNS 99
           TH+   L  Q H   L  G   +P ++  LIS YA F  P  +  +FD + ++    WNS
Sbjct: 39  THKSLKLTQQCHARILSLGFTQNPFLATKLISAYAIFGVPALSRLVFDSLHFKSVYLWNS 98

Query: 100 IINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDG 159
           +IN F +N  Y  +   F +M   G +L    LA +  +C +IG+L  G+ IH   +  G
Sbjct: 99  LINGFVKNRAYNEAFGWFYQMCCRGVLLDDYTLATMSKVCHEIGDLNAGKLIHGKSLKTG 158

Query: 160 SFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS--QNYDTGID 217
            F L V V+ +L+ +YSKC  +   L++F++M  RN  SW  ++SG  DS  +N+D  + 
Sbjct: 159 -FVLDVIVANSLMSMYSKCGGFGECLKLFDEMPERNVGSWNVILSGYADSGDRNFDKEVS 217

Query: 218 LF-RAMQREGVKPTRVTLTIVLLACAELRDLRN-GKAIHGY----AYCCGFDFDHHLSAA 271
            F + MQ EG+KP   T++ +L  C      R+ G+ +HG+        G   + HL   
Sbjct: 218 GFVKDMQIEGLKPDAFTVSSLLTLCNGHMGKRDHGRELHGFIVRIELAVGSGTEVHLGCC 277

Query: 272 LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRL-ERIE 330
           L+ MY   +  +   R +F+R + ++V  W+++I G+ Q+G L E + LF  M++ + +E
Sbjct: 278 LIDMYSR-SNRVDVGRRVFDRMECRNVYAWTAMINGHVQNGALEEGLVLFHEMQVRDGVE 336

Query: 331 PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQI 390
           PN V+L+++L +C+  + L+    +H Y ++   N DVS+ NAL++MYSKCGS+  + Q+
Sbjct: 337 PNKVSLVSVLPACSAVAGLTGVKQIHGYAIRKQFNNDVSLCNALIDMYSKCGSLDHAKQV 396

Query: 391 FNEMAA--RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG 448
           F E  +  RD +SW+++ISGYG HG GEEA+ ++ +M + G +PD IT++ +LSAC+ AG
Sbjct: 397 F-EFGSFRRDPISWSSMISGYGLHGKGEEAVFVYNKMLQLGNKPDMITIVGVLSACSRAG 455

Query: 449 LVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSL 508
           LV E   ++ + + + +I   +E  AC VD+LG+SG++  A   + TMPM+PS  +  ++
Sbjct: 456 LVDEGLCIYKSAINKYRIKPTVEICACVVDMLGRSGQLGQALDYIKTMPMEPSPSVWGAV 515

Query: 509 VSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLS 568
           VSA  IHG  E+ ++    L++ EPEN +NY  LS + + S  W    EV  +M+ + L+
Sbjct: 516 VSASIIHGNSEMQDLAYRFLVQLEPENPSNYVSLSNLHASSRRWDVVSEVRTMMKDRCLT 575

Query: 569 KSYGFSRI 576
           K+ G S I
Sbjct: 576 KTPGCSWI 583


>gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 198/572 (34%), Positives = 313/572 (54%), Gaps = 6/572 (1%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           +  + LY Q L  SG   +     S++K+C+     +    QLH   LKS   AD +  N
Sbjct: 181 DNAITLYVQMLR-SGHIPDHFTFGSIVKSCSGLDDFK-LARQLHAHVLKSEFGADLIAQN 238

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +LISMY KFS+   A  +F  +  +D ISW S+I  F+Q G+ + +L  FREM       
Sbjct: 239 ALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQ 298

Query: 128 KAELLAG-IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
             E + G   S CS++ E + GRQIH L I  G     +F   +L D+Y+KC     A  
Sbjct: 299 PNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFG-LGSDLFAGCSLCDMYAKCGFLESART 357

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VF  +   + V+W A+I+G     N       F  M+  G+ P  VT+  +L AC+E   
Sbjct: 358 VFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVM 417

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK-DVVIWSSII 305
           L +G  +H Y    GF+ D  +  +L+ MY +C+  L+ A  +FE    K D+V W++++
Sbjct: 418 LNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSN-LNDALQVFEDIGNKADIVSWNTLL 476

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
               Q     E ++L   M   RI+P+ VTL  +L S  + +    G  +HC+IMK+GLN
Sbjct: 477 TACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLN 536

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            D+S+ NAL+NMY+KCGS+  + ++F+ +   D +SW++LI GY   G G+EA +LF  M
Sbjct: 537 LDISVSNALINMYTKCGSLECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFELFRTM 596

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
           +  GV+P+ IT + IL+AC+H G+V+E   L+  + ++ +I+   EH +C VDLL ++G 
Sbjct: 597 RGLGVKPNEITFVGILTACSHIGMVEEGLKLYRTMQEDYRISPTKEHCSCMVDLLARAGC 656

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV 545
           ++ A   +  MP  P   +  +L++AC++HG LEV +  A  +++ +P N+A   +L  +
Sbjct: 657 LDVAEDFIKQMPFVPDVVVWKTLLAACKVHGNLEVGKRAAENVLKIDPSNSAAVVMLCNI 716

Query: 546 CSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            + SG+W     +   MR   + K  G S IE
Sbjct: 717 HASSGHWKDFARLRSSMRRMDVGKVPGQSWIE 748



 Score =  218 bits (556), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 145/517 (28%), Positives = 260/517 (50%), Gaps = 21/517 (4%)

Query: 8   EQTLHLYKQELHPSGLYS-------NTAILPSV-----IKACAYAQTHQHFGLQLHCTAL 55
           ++ + L K+ LH   L +       +++ L SV     I AC+  ++ +H G ++H   L
Sbjct: 67  DKIISLCKKNLHREALKAFDIFQKCSSSPLKSVTYTHLINACSSLRSLEH-GRKIHRHML 125

Query: 56  KSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLE 115
                 D ++ N ++SMY K    + A  +FD MP ++ +SW S+I+ +++ G    ++ 
Sbjct: 126 TCNYQPDMILQNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAIT 185

Query: 116 MFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLY 175
           ++ +M   G +        I+  CS + + +L RQ+HA V+    F   +    AL+ +Y
Sbjct: 186 LYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLARQLHAHVL-KSEFGADLIAQNALISMY 244

Query: 176 SKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYD-TGIDLFRAMQREGV-KPTRVT 233
           +K      A+ VF +++I++ +SW +MI+G      Y+   +  FR M  + V +P    
Sbjct: 245 TKFSQMADAINVFSRIIIKDLISWGSMIAG-FSQLGYELEALCHFREMLSQSVYQPNEFV 303

Query: 234 LTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERT 293
                 AC++L +   G+ IHG     G   D     +L  MY +C   L  AR +F   
Sbjct: 304 FGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCG-FLESARTVFYHI 362

Query: 294 KVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGL 353
           +  D+V W++II G++   +  E+   FS+MR   + PN VT+L++L +C+    L+HG+
Sbjct: 363 EKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGI 422

Query: 354 GVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFH 412
            VH YI+K G N D+ + N+L++MYSKC ++  + Q+F ++  + D VSW TL++     
Sbjct: 423 QVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQ 482

Query: 413 GYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEH 472
               E L+L   M  S ++PD +T+  +L +       +    +   +MK   + L I  
Sbjct: 483 NQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKS-GLNLDISV 541

Query: 473 YACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLV 509
               +++  K G +E A K+  ++   P     SSL+
Sbjct: 542 SNALINMYTKCGSLECARKMFDSIG-NPDIISWSSLI 577



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 107/387 (27%), Positives = 194/387 (50%), Gaps = 4/387 (1%)

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
           LK+     +I+ CS +  LE GR+IH  ++   +++  + +   +L +Y KC     A  
Sbjct: 96  LKSVTYTHLINACSSLRSLEHGRKIHRHMLT-CNYQPDMILQNHILSMYGKCGSLKEARN 154

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           +F+ M ++N VSWT+MISG       D  I L+  M R G  P   T   ++ +C+ L D
Sbjct: 155 MFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDD 214

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
            +  + +H +     F  D     AL+ MY + ++ +  A  +F R  +KD++ W S+I 
Sbjct: 215 FKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQ-MADAINVFSRIIIKDLISWGSMIA 273

Query: 307 GYSQSGDLSEAMKLFSRMRLERI-EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
           G+SQ G   EA+  F  M  + + +PN     +  S+C++      G  +H   +K GL 
Sbjct: 274 GFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLG 333

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            D+  G +L +MY+KCG + S+  +F  +   D V+W  +I+G+      +E+   F +M
Sbjct: 334 SDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQM 393

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
           + +G+ P+ +TVL++L AC+   ++     + + ++K     L I      + +  K   
Sbjct: 394 RHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVK-MGFNLDIPVCNSLLSMYSKCSN 452

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSAC 512
           + DA +V   +  K      ++L++AC
Sbjct: 453 LNDALQVFEDIGNKADIVSWNTLLTAC 479


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 192/572 (33%), Positives = 313/572 (54%), Gaps = 12/572 (2%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           FYE  L         SG+  N   L S++ AC   +     G  +H   +K G D DP  
Sbjct: 246 FYEMVL---------SGIKPNEFSLSSMVNACTGLRDSSR-GKIIHGYLIKLGYDWDPFS 295

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
           +N+L+ MYAK      A  +F+++   D +SWN++I     +  + ++LE+  +M   G 
Sbjct: 296 ANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGI 355

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
                 L+  +  C+ +G  ELGRQ+H+  ++    E  +FVS  L+D+YSKC     A 
Sbjct: 356 CPNIFTLSSALKACAGMGLKELGRQLHS-SLMKMDMESDLFVSVGLVDMYSKCDLLEDAR 414

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
             F  +  ++ ++W A+ISG          + LF  M +EG+   + TL+ +L + A L+
Sbjct: 415 MAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQ 474

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
            +   + +HG +   GF  D ++  +L+  Y +C+  +  A  IFE   + D+V ++S+I
Sbjct: 475 VVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSH-VEDAERIFEECTIGDLVSFTSMI 533

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
             Y+Q G   EA+KLF  M+   ++P+     ++L++C   S    G  +H +I+K G  
Sbjct: 534 TAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFV 593

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            D+  GN+L+NMY+KCGSI  + + F+E+  R  VSW+ +I G   HG+G +ALQLF +M
Sbjct: 594 LDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQM 653

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
            + GV P+ IT++++L ACNHAGLV EA+  F ++ +        EHYAC +DLLG++GK
Sbjct: 654 LKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGK 713

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV 545
           I +A ++V+ MP + +  +  +L+ A RIH  +E+    A  L   EPE +  + LL+ +
Sbjct: 714 INEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANI 773

Query: 546 CSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            + +G W    EV R+MR   + K  G S IE
Sbjct: 774 YASAGKWENVAEVRRLMRDSKVKKEPGMSWIE 805



 Score =  261 bits (668), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 166/537 (30%), Positives = 289/537 (53%), Gaps = 8/537 (1%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
            E+H  G+  N     SV+KAC+  +  +  G Q+H   + SG + D  ++N+L+ MYAK
Sbjct: 146 HEMHLLGVKCNEFTFSSVLKACSIVKDLR-IGKQVHGVVVVSGFEGDVFVANTLVVMYAK 204

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
             +   + +LFDE+P R+ +SWN++ +C+ Q  F   ++ +F EM L G       L+ +
Sbjct: 205 CDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSM 264

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           ++ C+ + +   G+ IH  +I  G ++   F + AL+D+Y+K      A+ VFE++   +
Sbjct: 265 VNACTGLRDSSRGKIIHGYLIKLG-YDWDPFSANALVDMYAKVGDLADAISVFEKIKQPD 323

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
            VSW A+I+GC+  ++++  ++L   M+R G+ P   TL+  L ACA +     G+ +H 
Sbjct: 324 IVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHS 383

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
                  + D  +S  L+ MY +C + L  AR+ F     KD++ W++II GYSQ  +  
Sbjct: 384 SLMKMDMESDLFVSVGLVDMYSKC-DLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDM 442

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           EA+ LF  M  E I  N  TL  IL S      +     VH   +K+G + D+ + N+L+
Sbjct: 443 EALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLI 502

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           + Y KC  +  + +IF E    D VS+T++I+ Y  +G GEEAL+LFLEMQ+  ++PD  
Sbjct: 503 DSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRF 562

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
              ++L+AC +    ++ + L  +++K     L I      V++  K G I+DA +  S 
Sbjct: 563 VCSSLLNACANLSAFEQGKQLHVHILK-YGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSE 621

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV--CSESG 550
           +  +      S+++     HG    A  L +Q+++ E  +  + TL+S++  C+ +G
Sbjct: 622 LTERGIVS-WSAMIGGLAQHGHGRQALQLFNQMLK-EGVSPNHITLVSVLGACNHAG 676



 Score =  242 bits (618), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 157/509 (30%), Positives = 252/509 (49%), Gaps = 55/509 (10%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           GLQ+H    KSG   DP I N LI++Y+K      A +L DE    D +SW+++I+ + Q
Sbjct: 75  GLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQ 134

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           NG    +L  F EM+L G        + ++  CS + +L +G+Q+H +V+V G FE  VF
Sbjct: 135 NGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSG-FEGDVF 193

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           V+  L+ +Y+KC  +L + R+F+++  RN VSW A+ S  +        + LF  M   G
Sbjct: 194 VANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSG 253

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           +KP   +L+ ++ AC  LRD   GK IHGY    G+D+D   + AL+ MY +  + L  A
Sbjct: 254 IKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGD-LADA 312

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
             +FE+ K  D+V W+++I G        +A++L  +M+   I PN  TL + L +C   
Sbjct: 313 ISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGM 372

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
                G  +H  +MK  +  D+ +   L++MYSKC  +  +   FN +  +D ++W  +I
Sbjct: 373 GLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAII 432

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA----------------------- 443
           SGY  +    EAL LF+EM + G+  +  T+  IL +                       
Sbjct: 433 SGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFH 492

Query: 444 ---------------CNHAGLVKEAETLFNNVMKEKKIALA--IEHYACYVDLLGKSGKI 486
                          C+H   V++AE +F        ++    I  YA Y       G+ 
Sbjct: 493 SDIYVVNSLIDSYGKCSH---VEDAERIFEECTIGDLVSFTSMITAYAQY-------GQG 542

Query: 487 EDACKV---VSTMPMKPSTRILSSLVSAC 512
           E+A K+   +  M +KP   + SSL++AC
Sbjct: 543 EEALKLFLEMQDMELKPDRFVCSSLLNAC 571



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 116/368 (31%), Positives = 194/368 (52%), Gaps = 9/368 (2%)

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           ++S C     L  G QIHA +   G       +   L++LYSKC ++  A ++ ++    
Sbjct: 62  LLSQCCTTKSLRPGLQIHAHITKSG-LSDDPSIRNHLINLYSKCRNFGYARKLVDESSEP 120

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
           + VSW+A+ISG   +      +  F  M   GVK    T + VL AC+ ++DLR GK +H
Sbjct: 121 DLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVH 180

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
           G     GF+ D  ++  L+ MY +C E L   R+ F+    ++VV W+++   Y Q    
Sbjct: 181 GVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRL-FDEIPERNVVSWNALFSCYVQIDFC 239

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
            EA+ LF  M L  I+PN  +L +++++CT     S G  +H Y++K G ++D    NAL
Sbjct: 240 GEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANAL 299

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           ++MY+K G +  +  +F ++   D VSW  +I+G   H + E+AL+L  +M+ SG+ P+ 
Sbjct: 300 VDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNI 359

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLLGKSGKIEDACK 491
            T+ + L AC   GL +    L +++MK   E  + +++      VD+  K   +EDA  
Sbjct: 360 FTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVG----LVDMYSKCDLLEDARM 415

Query: 492 VVSTMPMK 499
             + +P K
Sbjct: 416 AFNLLPEK 423



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 153/313 (48%), Gaps = 7/313 (2%)

Query: 218 LFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYC 277
           +   + +    PT V+ + +L  C   + LR G  IH +    G   D  +   L+++Y 
Sbjct: 43  ILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYS 102

Query: 278 ECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLL 337
           +C    + AR + + +   D+V WS++I GY+Q+G    A+  F  M L  ++ N  T  
Sbjct: 103 KCRNFGY-ARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFS 161

Query: 338 AILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR 397
           ++L +C+    L  G  VH  ++ +G   DV + N L+ MY+KC     S ++F+E+  R
Sbjct: 162 SVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPER 221

Query: 398 DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLF 457
           + VSW  L S Y    +  EA+ LF EM  SG++P+  ++ ++++AC         + + 
Sbjct: 222 NVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIH 281

Query: 458 NNVMKEKKIALAIEHYA--CYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIH 515
             ++   K+    + ++    VD+  K G + DA  V   +  +P     +++++ C +H
Sbjct: 282 GYLI---KLGYDWDPFSANALVDMYAKVGDLADAISVFEKIK-QPDIVSWNAVIAGCVLH 337

Query: 516 GRLEVAEMLAHQL 528
              E A  L  Q+
Sbjct: 338 EHHEQALELLGQM 350


>gi|449518693|ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  337 bits (865), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 198/572 (34%), Positives = 313/572 (54%), Gaps = 6/572 (1%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           +  + LY Q L  SG   +     S++K+C+     +    QLH   LKS   AD +  N
Sbjct: 181 DNAITLYVQMLR-SGHIPDHFTFGSIVKSCSGLDDFK-LARQLHAHVLKSEFGADLIAQN 238

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +LISMY KFS+   A  +F  +  +D ISW S+I  F+Q G+ + +L  FREM       
Sbjct: 239 ALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQ 298

Query: 128 KAELLAG-IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
             E + G   S CS++ E + GRQIH L I  G     +F   +L D+Y+KC     A  
Sbjct: 299 PNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFG-LGSDLFAGCSLCDMYAKCGFLESART 357

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VF  +   + V+W A+I+G     N       F  M+  G+ P  VT+  +L AC+E   
Sbjct: 358 VFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVM 417

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK-DVVIWSSII 305
           L +G  +H Y    GF+ D  +  +L+ MY +C+  L+ A  +FE    K D+V W++++
Sbjct: 418 LNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSN-LNDALQVFEDIGNKADIVSWNTLL 476

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
               Q     E ++L   M   RI+P+ VTL  +L S  + +    G  +HC+IMK+GLN
Sbjct: 477 TACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLN 536

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            D+S+ NAL+NMY+KCGS+  + ++F+ +   D +SW++LI GY   G G+EA +LF  M
Sbjct: 537 LDISVSNALINMYTKCGSLECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFELFRTM 596

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
           +  GV+P+ IT + IL+AC+H G+V+E   L+  + ++ +I+   EH +C VDLL ++G 
Sbjct: 597 RGLGVKPNEITFVGILTACSHIGMVEEGLKLYRTMQEDYRISPTKEHCSCMVDLLARAGC 656

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV 545
           ++ A   +  MP  P   +  +L++AC++HG LEV +  A  +++ +P N+A   +L  +
Sbjct: 657 LDVAEDFIRQMPFVPDVVVWKTLLAACKVHGNLEVGKRAAENVLKIDPSNSAAVVMLCNI 716

Query: 546 CSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            + SG+W     +   MR   + K  G S IE
Sbjct: 717 HASSGHWKDFARLRSSMRRMDVGKVPGQSWIE 748



 Score =  218 bits (556), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 145/517 (28%), Positives = 260/517 (50%), Gaps = 21/517 (4%)

Query: 8   EQTLHLYKQELHPSGLYS-------NTAILPSV-----IKACAYAQTHQHFGLQLHCTAL 55
           ++ + L K+ LH   L +       +++ L SV     I AC+  ++ +H G ++H   L
Sbjct: 67  DKIISLCKKNLHREALKAFDIFQKCSSSPLKSVTYTHLINACSSLRSLEH-GRKIHRHML 125

Query: 56  KSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLE 115
                 D ++ N ++SMY K    + A  +FD MP ++ +SW S+I+ +++ G    ++ 
Sbjct: 126 TCNYQPDMILQNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAIT 185

Query: 116 MFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLY 175
           ++ +M   G +        I+  CS + + +L RQ+HA V+    F   +    AL+ +Y
Sbjct: 186 LYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLARQLHAHVL-KSEFGADLIAQNALISMY 244

Query: 176 SKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYD-TGIDLFRAMQREGV-KPTRVT 233
           +K      A+ VF +++I++ +SW +MI+G      Y+   +  FR M  + V +P    
Sbjct: 245 TKFSQMADAINVFSRIIIKDLISWGSMIAG-FSQLGYELEALCHFREMLSQSVYQPNEFV 303

Query: 234 LTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERT 293
                 AC++L +   G+ IHG     G   D     +L  MY +C   L  AR +F   
Sbjct: 304 FGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCG-FLESARTVFYHI 362

Query: 294 KVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGL 353
           +  D+V W++II G++   +  E+   FS+MR   + PN VT+L++L +C+    L+HG+
Sbjct: 363 EKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGI 422

Query: 354 GVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFH 412
            VH YI+K G N D+ + N+L++MYSKC ++  + Q+F ++  + D VSW TL++     
Sbjct: 423 QVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQ 482

Query: 413 GYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEH 472
               E L+L   M  S ++PD +T+  +L +       +    +   +MK   + L I  
Sbjct: 483 NQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKS-GLNLDISV 541

Query: 473 YACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLV 509
               +++  K G +E A K+  ++   P     SSL+
Sbjct: 542 SNALINMYTKCGSLECARKMFDSIG-NPDIISWSSLI 577



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 107/387 (27%), Positives = 194/387 (50%), Gaps = 4/387 (1%)

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
           LK+     +I+ CS +  LE GR+IH  ++   +++  + +   +L +Y KC     A  
Sbjct: 96  LKSVTYTHLINACSSLRSLEHGRKIHRHMLT-CNYQPDMILQNHILSMYGKCGSLKEARN 154

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           +F+ M ++N VSWT+MISG       D  I L+  M R G  P   T   ++ +C+ L D
Sbjct: 155 MFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDD 214

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
            +  + +H +     F  D     AL+ MY + ++ +  A  +F R  +KD++ W S+I 
Sbjct: 215 FKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQ-MADAINVFSRIIIKDLISWGSMIA 273

Query: 307 GYSQSGDLSEAMKLFSRMRLERI-EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
           G+SQ G   EA+  F  M  + + +PN     +  S+C++      G  +H   +K GL 
Sbjct: 274 GFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLG 333

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            D+  G +L +MY+KCG + S+  +F  +   D V+W  +I+G+      +E+   F +M
Sbjct: 334 SDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQM 393

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
           + +G+ P+ +TVL++L AC+   ++     + + ++K     L I      + +  K   
Sbjct: 394 RHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVK-MGFNLDIPVCNSLLSMYSKCSN 452

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSAC 512
           + DA +V   +  K      ++L++AC
Sbjct: 453 LNDALQVFEDIGNKADIVSWNTLLTAC 479


>gi|356519887|ref|XP_003528600.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 813

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 191/574 (33%), Positives = 328/574 (57%), Gaps = 7/574 (1%)

Query: 6   FYEQTLHLYKQELHPS-GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPV 64
           FYE+ L  ++  +    G+  +   + SV+  CA  +  +     +HC ALK G     V
Sbjct: 218 FYEEALGFFRVMVAAKPGIQPDLVTVVSVLPVCAETED-KVMARIVHCYALKVGLLGGHV 276

Query: 65  -ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC 123
            + N+L+ +Y K    +++ ++FDE+  R+ ISWN+II  F+  G Y+ +L++FR M   
Sbjct: 277 KVGNALVDVYGKCGSEKASKKVFDEIDERNVISWNAIITSFSFRGKYMDALDVFRLMIDE 336

Query: 124 GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
           G    +  ++ ++ +  ++G  +LG ++H   +   + E  VF+S +L+D+Y+K     I
Sbjct: 337 GMRPNSVTISSMLPVLGELGLFKLGMEVHGFSL-KMAIESDVFISNSLIDMYAKSGSSRI 395

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
           A  +F +M +RN VSW AMI+    ++     ++L R MQ +G  P  VT T VL ACA 
Sbjct: 396 ASTIFNKMGVRNIVSWNAMIANFARNRLEYEAVELVRQMQAKGETPNNVTFTNVLPACAR 455

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
           L  L  GK IH      G   D  +S AL  MY +C   L+ A+ +F    V+D V ++ 
Sbjct: 456 LGFLNVGKEIHARIIRVGSSLDLFVSNALTDMYSKCG-CLNLAQNVFN-ISVRDEVSYNI 513

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           +I GYS++ D  E+++LFS MRL  + P+ V+ + ++S+C   +F+  G  +H  +++  
Sbjct: 514 LIIGYSRTNDSLESLRLFSEMRLLGMRPDIVSFMGVVSACANLAFIRQGKEIHGLLVRKL 573

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
            +  + + N+L+++Y++CG I  + ++F  +  +D  SW T+I GYG  G  + A+ LF 
Sbjct: 574 FHTHLFVANSLLDLYTRCGRIDLATKVFYCIQNKDVASWNTMILGYGMRGELDTAINLFE 633

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS 483
            M+E GVE D+++ +A+LSAC+H GL+++    F  +M +  I     HYAC VDLLG++
Sbjct: 634 AMKEDGVEYDSVSFVAVLSACSHGGLIEKGRKYF-KMMCDLNIEPTHTHYACMVDLLGRA 692

Query: 484 GKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLS 543
           G +E+A  ++  + + P T I  +L+ ACRIHG +E+    A  L E +P++   Y LLS
Sbjct: 693 GLMEEAADLIRGLSIIPDTNIWGALLGACRIHGNIELGLWAAEHLFELKPQHCGYYILLS 752

Query: 544 MVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            + +E+  W  A +V  +M+++G  K+ G S ++
Sbjct: 753 NMYAEAERWDEANKVRELMKSRGAKKNPGCSWVQ 786



 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 154/538 (28%), Positives = 281/538 (52%), Gaps = 18/538 (3%)

Query: 21  SGLYSNTAILPSVIKACA-YAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKP 79
           +G+  +    P V+K C+ + +  +  G ++H  A K G D D  + N+L++ Y      
Sbjct: 131 AGVKPDECTYPFVLKVCSDFVEVRK--GREVHGVAFKLGFDGDVFVGNTLLAFYGNCGLF 188

Query: 80  ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLA--GIIS 137
             A ++FDEMP RD +SWN++I   + +GFY  +L  FR M      ++ +L+    ++ 
Sbjct: 189 GDAMKVFDEMPERDKVSWNTVIGLCSLHGFYEEALGFFRVMVAAKPGIQPDLVTVVSVLP 248

Query: 138 LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197
           +C++  +  + R +H   +  G     V V  AL+D+Y KC     + +VF+++  RN +
Sbjct: 249 VCAETEDKVMARIVHCYALKVGLLGGHVKVGNALVDVYGKCGSEKASKKVFDEIDERNVI 308

Query: 198 SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
           SW A+I+       Y   +D+FR M  EG++P  VT++ +L    EL   + G  +HG++
Sbjct: 309 SWNAIITSFSFRGKYMDALDVFRLMIDEGMRPNSVTISSMLPVLGELGLFKLGMEVHGFS 368

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
                + D  +S +L+ MY +   +   A  IF +  V+++V W+++I  ++++    EA
Sbjct: 369 LKMAIESDVFISNSLIDMYAKSGSS-RIASTIFNKMGVRNIVSWNAMIANFARNRLEYEA 427

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
           ++L  +M+ +   PN+VT   +L +C R  FL+ G  +H  I++ G + D+ + NAL +M
Sbjct: 428 VELVRQMQAKGETPNNVTFTNVLPACARLGFLNVGKEIHARIIRVGSSLDLFVSNALTDM 487

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           YSKCG +  +  +FN ++ RD VS+  LI GY       E+L+LF EM+  G+ PD ++ 
Sbjct: 488 YSKCGCLNLAQNVFN-ISVRDEVSYNILIIGYSRTNDSLESLRLFSEMRLLGMRPDIVSF 546

Query: 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
           + ++SAC +   +++ + + + ++  K     +      +DL  + G+I+ A KV   + 
Sbjct: 547 MGVVSACANLAFIRQGKEI-HGLLVRKLFHTHLFVANSLLDLYTRCGRIDLATKVFYCIQ 605

Query: 498 MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV-----CSESG 550
            K      ++++    + G L+ A      L EA  E+   Y  +S V     CS  G
Sbjct: 606 NKDVAS-WNTMILGYGMRGELDTAI----NLFEAMKEDGVEYDSVSFVAVLSACSHGG 658



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 129/456 (28%), Positives = 219/456 (48%), Gaps = 13/456 (2%)

Query: 16  QELHPSGLYSN---TAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPV-ISNSLIS 71
           +  H S  +S    T+  P++++ C    T      Q+H  +L  G     V +  SLI 
Sbjct: 20  KNTHFSSFFSTSLQTSNPPNLLQLCTLCDTLSQTK-QVHAYSLLHGFLPRSVSLCASLIL 78

Query: 72  MYAKFSKPESAYQLFD-EMPY-RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKA 129
            YA F  P ++  LF   + Y R    WN++I   +  G +      +  M   G     
Sbjct: 79  QYASFGHPSNSLLLFQHSVAYSRSAFLWNTLIRANSIAGVF-DGFGTYNTMVRAGVKPDE 137

Query: 130 ELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
                ++ +CS   E+  GR++H +    G F+  VFV   LL  Y  C  +  A++VF+
Sbjct: 138 CTYPFVLKVCSDFVEVRKGREVHGVAFKLG-FDGDVFVGNTLLAFYGNCGLFGDAMKVFD 196

Query: 190 QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM--QREGVKPTRVTLTIVLLACAELRDL 247
           +M  R++VSW  +I  C     Y+  +  FR M   + G++P  VT+  VL  CAE  D 
Sbjct: 197 EMPERDKVSWNTVIGLCSLHGFYEEALGFFRVMVAAKPGIQPDLVTVVSVLPVCAETEDK 256

Query: 248 RNGKAIHGYAYCCGFDFDH-HLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
              + +H YA   G    H  +  AL+ +Y +C      ++ +F+    ++V+ W++II 
Sbjct: 257 VMARIVHCYALKVGLLGGHVKVGNALVDVYGKCGSE-KASKKVFDEIDERNVISWNAIIT 315

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
            +S  G   +A+ +F  M  E + PNSVT+ ++L           G+ VH + +K  +  
Sbjct: 316 SFSFRGKYMDALDVFRLMIDEGMRPNSVTISSMLPVLGELGLFKLGMEVHGFSLKMAIES 375

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           DV I N+L++MY+K GS   +  IFN+M  R+ VSW  +I+ +  +    EA++L  +MQ
Sbjct: 376 DVFISNSLIDMYAKSGSSRIASTIFNKMGVRNIVSWNAMIANFARNRLEYEAVELVRQMQ 435

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462
             G  P+ +T   +L AC   G +   + +   +++
Sbjct: 436 AKGETPNNVTFTNVLPACARLGFLNVGKEIHARIIR 471



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 119/439 (27%), Positives = 207/439 (47%), Gaps = 17/439 (3%)

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI- 193
           ++ LC+    L   +Q+HA  ++ G    SV +  +L+  Y+   H   +L +F+  V  
Sbjct: 40  LLQLCTLCDTLSQTKQVHAYSLLHGFLPRSVSLCASLILQYASFGHPSNSLLLFQHSVAY 99

Query: 194 -RNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKA 252
            R+   W  +I     +  +D G   +  M R GVKP   T   VL  C++  ++R G+ 
Sbjct: 100 SRSAFLWNTLIRANSIAGVFD-GFGTYNTMVRAGVKPDECTYPFVLKVCSDFVEVRKGRE 158

Query: 253 IHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSG 312
           +HG A+  GFD D  +   L+  Y  C      A  +F+    +D V W+++I   S  G
Sbjct: 159 VHGVAFKLGFDGDVFVGNTLLAFYGNCG-LFGDAMKVFDEMPERDKVSWNTVIGLCSLHG 217

Query: 313 DLSEAMKLFSRMRLER--IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG-LNFDVS 369
              EA+  F  M   +  I+P+ VT++++L  C           VHCY +K G L   V 
Sbjct: 218 FYEEALGFFRVMVAAKPGIQPDLVTVVSVLPVCAETEDKVMARIVHCYALKVGLLGGHVK 277

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
           +GNAL+++Y KCGS  +S ++F+E+  R+ +SW  +I+ + F G   +AL +F  M + G
Sbjct: 278 VGNALVDVYGKCGSEKASKKVFDEIDERNVISWNAIITSFSFRGKYMDALDVFRLMIDEG 337

Query: 430 VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYA----CYVDLLGKSGK 485
           + P+++T+ ++L      GL K    +    +K     +AIE         +D+  KSG 
Sbjct: 338 MRPNSVTISSMLPVLGELGLFKLGMEVHGFSLK-----MAIESDVFISNSLIDMYAKSGS 392

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV 545
              A  + + M ++      + + +  R     E  E++     + E  N   +T +   
Sbjct: 393 SRIASTIFNKMGVRNIVSWNAMIANFARNRLEYEAVELVRQMQAKGETPNNVTFTNVLPA 452

Query: 546 CSESGNW-LGAEEVWRVMR 563
           C+  G   +G E   R++R
Sbjct: 453 CARLGFLNVGKEIHARIIR 471



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 151/338 (44%), Gaps = 46/338 (13%)

Query: 237 VLLACAELRDLRNGKAIHGYAYCCGF-DFDHHLSAALMHMYCECTEALHPAR--IIFERT 293
           +L  C     L   K +H Y+   GF      L A+L+  Y       HP+   ++F+ +
Sbjct: 40  LLQLCTLCDTLSQTKQVHAYSLLHGFLPRSVSLCASLILQYASFG---HPSNSLLLFQHS 96

Query: 294 KV--KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSH 351
               +   +W+++IR  S +G + +    ++ M    ++P+  T   +L  C+    +  
Sbjct: 97  VAYSRSAFLWNTLIRANSIAG-VFDGFGTYNTMVRAGVKPDECTYPFVLKVCSDFVEVRK 155

Query: 352 GLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGF 411
           G  VH    K G + DV +GN L+  Y  CG    + ++F+EM  RD VSW T+I     
Sbjct: 156 GREVHGVAFKLGFDGDVFVGNTLLAFYGNCGLFGDAMKVFDEMPERDKVSWNTVIGLCSL 215

Query: 412 HGYGEEALQLFLEM--QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA 469
           HG+ EEAL  F  M   + G++PD +TV+++L  C        AET      ++K +A  
Sbjct: 216 HGFYEEALGFFRVMVAAKPGIQPDLVTVVSVLPVC--------AET------EDKVMARI 261

Query: 470 IEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLI 529
           +  YA  V LLG   K+ +A                  LV    ++G+    +       
Sbjct: 262 VHCYALKVGLLGGHVKVGNA------------------LVD---VYGKCGSEKASKKVFD 300

Query: 530 EAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567
           E +  N  ++  +    S  G ++ A +V+R+M  +G+
Sbjct: 301 EIDERNVISWNAIITSFSFRGKYMDALDVFRLMIDEGM 338


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 197/592 (33%), Positives = 313/592 (52%), Gaps = 43/592 (7%)

Query: 25  SNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQ 84
           S   +  S+ +A A A T      +LH   +  G     + S  LI+ YA F  P S++ 
Sbjct: 11  SRQTLFSSISRALASAATTTQLH-KLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFS 69

Query: 85  LFD-EMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIG 143
           +F    P  +   WNSII   T NG +  +L ++ E               +I+ C+ + 
Sbjct: 70  VFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLL 129

Query: 144 ELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMI 203
           + E+ + IH  V+ D  F   +++  AL+D+Y + +    A +VFE+M +R+ VSW ++I
Sbjct: 130 DFEMAKSIHDRVL-DMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLI 188

Query: 204 SGCIDS-------QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           SG   +       + Y   I LF  M  +  KP  +T+T +L AC  L DL  GK +H Y
Sbjct: 189 SGYNANGYWNEALEIYYQSIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLEFGKYVHDY 247

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
               G++ D   S  L++MY +C   L  ++ +F   K KD V W+S+I  Y Q+G + +
Sbjct: 248 MITSGYECDTTASNILINMYAKCGNLL-ASQEVFSGMKCKDSVSWNSMINVYIQNGKMGD 306

Query: 317 AMKLF-------------------------------SRMRLERIEPNSVTLLAILSSCTR 345
           ++K+F                               SRMR E + P+  T+L+IL  C+ 
Sbjct: 307 SLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSL 366

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
            +    G  +H  I K GL  DV +GN L+ MYSKCGS+ +S Q+F  M  +D V+WT L
Sbjct: 367 LAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTAL 426

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           IS  G +G G++A++ F EM+ +G+ PD +  +AI+ AC+H+GLV+E    F+ + K+ K
Sbjct: 427 ISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYK 486

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
           I   IEHYAC VDLL +S  ++ A   + +MP+KP + I  +L+SACR+ G  E+AE ++
Sbjct: 487 IEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVS 546

Query: 526 HQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            ++IE  P++   Y L+S + +  G W     + + ++A+GL K  G S +E
Sbjct: 547 ERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWME 598



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/388 (29%), Positives = 189/388 (48%), Gaps = 47/388 (12%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
            + + L LY  E     L  +T   PSVI ACA     +     +H   L  G  +D  I
Sbjct: 95  LFSEALSLY-SETQRIRLQPDTYTFPSVINACAGLLDFE-MAKSIHDRVLDMGFGSDLYI 152

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF-------YVRSLEMFR 118
            N+LI MY +F+  + A ++F+EMP RD +SWNS+I+ +  NG+       Y +S+++F 
Sbjct: 153 GNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFM 212

Query: 119 EMYLCGFVLKAELL--AGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYS 176
           EM       K +LL    I+  C  +G+LE G+ +H  +I  G +E     S  L+++Y+
Sbjct: 213 EMV---NQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSG-YECDTTASNILINMYA 268

Query: 177 KCHHWLI-------------------------------ALRVFEQMVIRNEVSWTAMISG 205
           KC + L                                +L+VFE M  R+ ++W  +I+ 
Sbjct: 269 KCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKARDIITWNTIIAS 328

Query: 206 CIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFD 265
           C+ S++ + G+ +   M+ EGV P   T+  +L  C+ L   R GK IHG  +  G + D
Sbjct: 329 CVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESD 388

Query: 266 HHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR 325
             +   L+ MY +C  +L  +  +F+  K KDVV W+++I      G+  +A++ F  M 
Sbjct: 389 VPVGNVLIEMYSKCG-SLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEME 447

Query: 326 LERIEPNSVTLLAILSSCTRQSFLSHGL 353
              I P+ V  +AI+ +C+    +  GL
Sbjct: 448 AAGIVPDHVAFVAIIFACSHSGLVEEGL 475


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 184/563 (32%), Positives = 312/563 (55%), Gaps = 5/563 (0%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
            E+  SGL  ++  + S++ AC+ A      G QLH   LK+G   D ++  SL+ +Y K
Sbjct: 233 DEMQLSGLSPDSVTIASLLAACS-AVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVK 291

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
               E A Q+FD     + + WN ++  + Q     +S ++F  M   G          +
Sbjct: 292 SGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCM 351

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL-IALRVFEQMVIR 194
           +  C+  GE+ LG QIH+L I +G F+  ++VS  L+D+YSK + WL  A R+ + +  +
Sbjct: 352 LRTCTHTGEIGLGEQIHSLTIKNG-FQSDMYVSGVLIDMYSK-YGWLDKAQRILDMIEEK 409

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
           + VSWT+MI+G +  +     ++ F+ MQ  G+ P  + L   + ACA ++ +  G  IH
Sbjct: 410 DVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIH 469

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
              Y  G+  D  +   L+++Y  C  +   A   FE  + K+ + W+ +I G++QSG  
Sbjct: 470 ARVYVSGYSADVSIWNGLVYLYARCGIS-KEAFSSFEAIEHKEGITWNGLISGFAQSGLY 528

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
            EA+K+F +M     + N  T ++ +S+    + +  G  +H  ++K G   +  I NAL
Sbjct: 529 EEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEISNAL 588

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           +++Y KCGSI  +   F EM  R+ VSW T+I+    HG G EAL LF +M++ G++P  
Sbjct: 589 ISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSD 648

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS 494
           +T + +L+AC+H GLV+E    F ++  E  I    +HYAC VD+LG++G+++ A + V 
Sbjct: 649 VTFVGVLTACSHVGLVEEGLCYFKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVE 708

Query: 495 TMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLG 554
            MP+   + +  +L+SAC++H  LE+ E  A  L+E EP ++A+Y LLS   + +G W  
Sbjct: 709 EMPIPADSMVWRTLLSACKVHKNLEIGEFAAKHLLELEPHDSASYVLLSNAYAVTGKWAS 768

Query: 555 AEEVWRVMRAKGLSKSYGFSRIE 577
            +++ ++M+ +G+ K  G S IE
Sbjct: 769 RDQIRKIMKDRGVRKEPGRSWIE 791



 Score =  241 bits (616), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 131/411 (31%), Positives = 222/411 (54%), Gaps = 2/411 (0%)

Query: 34  IKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRD 93
           ++AC  +        ++H  A+  G     +I N LI +YAK      A ++F+E+  RD
Sbjct: 48  LRACRGSGRRWPLVPEIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRD 107

Query: 94  TISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHA 153
            +SW ++++ + QNG    ++ ++REM+  G V    +L+ I+S C++    +LGR IH 
Sbjct: 108 NVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHV 167

Query: 154 LVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYD 213
            V   G F    FV  AL+ LY +C  + +A RVF  M+  + V++  +ISG     + D
Sbjct: 168 QVYKQGFFS-ETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGD 226

Query: 214 TGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALM 273
             + +F  MQ  G+ P  VT+  +L AC+ + DLR GK +H Y    G   D+ +  +L+
Sbjct: 227 RALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLL 286

Query: 274 HMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNS 333
            +Y +  + +  A  IF+     +VV+W+ ++  Y Q  DL+++  +F RM    + PN 
Sbjct: 287 DLYVKSGD-IEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNK 345

Query: 334 VTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNE 393
            T   +L +CT    +  G  +H   +K G   D+ +   L++MYSK G +  + +I + 
Sbjct: 346 FTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDM 405

Query: 394 MAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
           +  +D VSWT++I+GY  H + +EAL+ F EMQ  G+ PD I + + +SAC
Sbjct: 406 IEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISAC 456



 Score =  228 bits (582), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 154/549 (28%), Positives = 275/549 (50%), Gaps = 17/549 (3%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E+ + LY+ E+H SG+     +L S++ AC   +  Q  G  +H    K G  ++  + N
Sbjct: 125 EEAVRLYR-EMHRSGVVPTPYVLSSILSACTKTELFQ-LGRLIHVQVYKQGFFSETFVGN 182

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +LIS+Y +      A ++F +M Y D++++N++I+   Q G   R+L +F EM L G   
Sbjct: 183 ALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSP 242

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
            +  +A +++ CS +G+L  G+Q+H+ ++  G   L   +  +LLDLY K      AL++
Sbjct: 243 DSVTIASLLAACSAVGDLRKGKQLHSYLLKAG-MSLDYIMEGSLLDLYVKSGDIEEALQI 301

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F+     N V W  M+       +     D+F  M   GV+P + T   +L  C    ++
Sbjct: 302 FDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEI 361

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
             G+ IH      GF  D ++S  L+ MY +    L  A+ I +  + KDVV W+S+I G
Sbjct: 362 GLGEQIHSLTIKNGFQSDMYVSGVLIDMYSK-YGWLDKAQRILDMIEEKDVVSWTSMIAG 420

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
           Y Q     EA++ F  M+   I P+++ L + +S+C     +  G  +H  +  +G + D
Sbjct: 421 YVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSAD 480

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
           VSI N L+ +Y++CG    +   F  +  ++ ++W  LISG+   G  EEAL++F++M +
Sbjct: 481 VSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQ 540

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK-----EKKIALAIEHYACYVDLLGK 482
           +G + +  T ++ +SA  +   +K+ + +   V+K     E +I+ A+      + L GK
Sbjct: 541 AGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEISNAL------ISLYGK 594

Query: 483 SGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGR-LEVAEMLAHQLIEAEPENAANYTL 541
            G IEDA      M  +      +++++ C  HGR LE  ++      +    +   +  
Sbjct: 595 CGSIEDAKMDFFEMTKRNEVS-WNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVG 653

Query: 542 LSMVCSESG 550
           +   CS  G
Sbjct: 654 VLTACSHVG 662



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 114/414 (27%), Positives = 197/414 (47%), Gaps = 8/414 (1%)

Query: 89  MPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGE-LEL 147
           M  R   S+N  +  F       + L +F        VL A   A  +  C   G    L
Sbjct: 1   MTPRGAASFNRPLAGFLAPDDPEKLLPLFAAKCRQYMVLGAVDFACALRACRGSGRRWPL 60

Query: 148 GRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCI 207
             +IHA  I+ G     + +   L+DLY+K      A RVFE++ +R+ VSW A++SG  
Sbjct: 61  VPEIHAKAIICGLSGYRI-IGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYA 119

Query: 208 DSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
            +   +  + L+R M R GV PT   L+ +L AC +    + G+ IH   Y  GF  +  
Sbjct: 120 QNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETF 179

Query: 268 LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
           +  AL+ +Y  C  +   A  +F      D V ++++I G++Q G    A+ +F  M+L 
Sbjct: 180 VGNALISLYLRC-RSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLS 238

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
            + P+SVT+ ++L++C+    L  G  +H Y++KAG++ D  +  +L+++Y K G I  +
Sbjct: 239 GLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEA 298

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHA 447
            QIF+     + V W  ++  YG      ++  +F  M  +GV P+  T   +L  C H 
Sbjct: 299 LQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHT 358

Query: 448 GLVKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDACKVVSTMPMK 499
           G +   E + +  +K        + Y     +D+  K G ++ A +++  +  K
Sbjct: 359 GEIGLGEQIHSLTIKN---GFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEK 409



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 99/361 (27%), Positives = 175/361 (48%), Gaps = 3/361 (0%)

Query: 191 MVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC-AELRDLRN 249
           M  R   S+   ++G +   + +  + LF A  R+ +    V     L AC    R    
Sbjct: 1   MTPRGAASFNRPLAGFLAPDDPEKLLPLFAAKCRQYMVLGAVDFACALRACRGSGRRWPL 60

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
              IH  A  CG      +   L+ +Y +    +  AR +FE   V+D V W +++ GY+
Sbjct: 61  VPEIHAKAIICGLSGYRIIGNLLIDLYAK-KGFVRRARRVFEELSVRDNVSWVAVLSGYA 119

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
           Q+G   EA++L+  M    + P    L +ILS+CT+      G  +H  + K G   +  
Sbjct: 120 QNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETF 179

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
           +GNAL+++Y +C S   + ++F +M   D V++ TLISG+   G+G+ AL +F EMQ SG
Sbjct: 180 VGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSG 239

Query: 430 VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
           + PD++T+ ++L+AC+  G +++ + L + ++K   ++L        +DL  KSG IE+A
Sbjct: 240 LSPDSVTIASLLAACSAVGDLRKGKQLHSYLLK-AGMSLDYIMEGSLLDLYVKSGDIEEA 298

Query: 490 CKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSES 549
            ++  +            LV+  +I    +  ++    L      N   Y  +   C+ +
Sbjct: 299 LQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHT 358

Query: 550 G 550
           G
Sbjct: 359 G 359


>gi|255558188|ref|XP_002520121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540613|gb|EEF42176.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 589

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 183/547 (33%), Positives = 313/547 (57%), Gaps = 7/547 (1%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPY 91
           S++  CA  +   H GL LH  ALK+G  +D ++SN +I++Y+K      A ++FDEM  
Sbjct: 8   SLLHHCAKIKAFLH-GLSLHAAALKTGMLSDIIVSNHVINLYSKCGNVIFARRMFDEMSD 66

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQI 151
           R+ +SW++II+ + Q G  + +L +F +M +   V    + A +IS C+ +  L  G Q+
Sbjct: 67  RNLVSWSAIISGYDQTGQPLLALNLFSQMRI---VPNEYVFASVISACASLTALSQGLQV 123

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQN 211
           HA  +  G   +S FVS AL+ +Y KC     AL V   M   N VS+ A+I+G +++Q 
Sbjct: 124 HAQSLKLGCVSVS-FVSNALISMYMKCGLCTDALLVHNVMSEPNAVSYNALIAGFVENQQ 182

Query: 212 YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAA 271
            + GI+ F+ M+++G  P R T + +L  C    D   G  +H        +    +   
Sbjct: 183 PEKGIEAFKVMRQKGFAPDRFTFSGLLGICTSYDDFWRGMQLHCQMIKLNLEDSAFIGNV 242

Query: 272 LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM-RLERIE 330
           ++ MY +    +  A  +F   K KD++ W++++       D   A+++F  M  +  ++
Sbjct: 243 IITMYSK-FNLIEEAEKVFGLIKEKDLISWNTLVTACCFCKDHERALRVFRDMLDVCFVK 301

Query: 331 PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQI 390
           P+  T   +L++C   + + HG  +H ++++     DV + NAL+NMY+KCGSI +S+ +
Sbjct: 302 PDDFTFAGVLAACAGLASIRHGKQIHGHLIRTRQYQDVGVSNALVNMYAKCGSIKNSYDV 361

Query: 391 FNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLV 450
           F   + R+ VSW T+I+ +G HG G  AL+ F +M+  G+ PD++T + +L+ACNHAGLV
Sbjct: 362 FRRTSDRNLVSWNTIIAAFGNHGLGARALEHFEKMKTVGIHPDSVTFVGLLTACNHAGLV 421

Query: 451 KEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVS 510
           +E +  FN++ +   I   IEH++C +DLLG++G++++A + +  +P      IL SL+S
Sbjct: 422 EEGQVYFNSMEEAYGIFPNIEHFSCLIDLLGRAGRLQEAEEYMEKLPFGHDPIILGSLLS 481

Query: 511 ACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKS 570
           ACR+HG + + E LA QL++ +P   + Y LLS + +    W G  E W++++  GL K 
Sbjct: 482 ACRLHGDMVIGEHLATQLLKLQPVTTSPYVLLSNLYASDEMWGGVAEAWKMLKYSGLKKE 541

Query: 571 YGFSRIE 577
            G S I+
Sbjct: 542 PGHSLID 548


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 186/559 (33%), Positives = 322/559 (57%), Gaps = 12/559 (2%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           SGL  +    PSV+KAC         G ++HC ALK G   D  ++ SLI +Y+++    
Sbjct: 147 SGLTPDYRTFPSVLKACRTVID----GNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVG 202

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
           +A  LFDEMP RD  SWN++I+ + Q+G    +L +   +      + +  +  ++S C+
Sbjct: 203 NARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLR----AMDSVTVVSLLSACT 258

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
           + G+   G  IH+  I  G  E  +FVS  L+DLY++        +VF++M +R+ +SW 
Sbjct: 259 EAGDFNRGVTIHSYSIKHG-LESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWN 317

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
           ++I     ++     I LF+ M+   ++P  +TL  +    ++L D+R  +++ G+    
Sbjct: 318 SIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRK 377

Query: 261 G-FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
           G F  D  +  A++ MY +    +  AR +F      DV+ W++II GY+Q+G  SEA++
Sbjct: 378 GWFLEDITIGNAVVVMYAKLG-LVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIE 436

Query: 320 LFSRMRLE-RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMY 378
           +++ M  E  I  N  T +++L +C++   L  G+ +H  ++K GL  DV +  +L +MY
Sbjct: 437 MYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMY 496

Query: 379 SKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
            KCG +  +  +F ++   + V W TLI+ +GFHG+GE+A+ LF EM + GV+PD IT +
Sbjct: 497 GKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFV 556

Query: 439 AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPM 498
            +LSAC+H+GLV E +  F  +  +  I  +++HY C VD+ G++G++E A K + +M +
Sbjct: 557 TLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSL 616

Query: 499 KPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEV 558
           +P   I  +L+SACR+HG +++ ++ +  L E EPE+   + LLS + + +G W G +E+
Sbjct: 617 QPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEI 676

Query: 559 WRVMRAKGLSKSYGFSRIE 577
             +   KGL K+ G+S +E
Sbjct: 677 RSIAHGKGLRKTPGWSSME 695



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 149/511 (29%), Positives = 259/511 (50%), Gaps = 27/511 (5%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           LH   + S    +  IS  L+++Y        A   FD +  RD  +WN +I+ + + G 
Sbjct: 73  LHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGN 132

Query: 110 ---YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
               +R   +F  M   G          ++  C  + +   G +IH L +  G F   V+
Sbjct: 133 SSEVIRCFSLF--MLSSGLTPDYRTFPSVLKACRTVID---GNKIHCLALKFG-FMWDVY 186

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDL---FRAMQ 223
           V+ +L+ LYS+      A  +F++M +R+  SW AMISG   S N    + L    RAM 
Sbjct: 187 VAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAMD 246

Query: 224 REGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEAL 283
                   VT+  +L AC E  D   G  IH Y+   G + +  +S  L+ +Y E    L
Sbjct: 247 -------SVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGR-L 298

Query: 284 HPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC 343
              + +F+R  V+D++ W+SII+ Y  +     A+ LF  MRL RI+P+ +TL+++ S  
Sbjct: 299 RDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASIL 358

Query: 344 TRQSFLSHGLGVHCYIMKAGLNF-DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSW 402
           ++   +     V  + ++ G    D++IGNA++ MY+K G + S+  +FN +   D +SW
Sbjct: 359 SQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISW 418

Query: 403 TTLISGYGFHGYGEEALQLFLEMQESG-VEPDAITVLAILSACNHAGLVKEAETLFNNVM 461
            T+ISGY  +G+  EA++++  M+E G +  +  T +++L AC+ AG +++   L   ++
Sbjct: 419 NTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLL 478

Query: 462 KEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA 521
           K   + L +       D+ GK G++EDA  +   +P + ++   ++L++    HG  E A
Sbjct: 479 K-NGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIP-RVNSVPWNTLIACHGFHGHGEKA 536

Query: 522 EMLAHQLIE--AEPENAANYTLLSMVCSESG 550
            ML  ++++   +P++    TLLS  CS SG
Sbjct: 537 VMLFKEMLDEGVKPDHITFVTLLS-ACSHSG 566


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 189/578 (32%), Positives = 322/578 (55%), Gaps = 42/578 (7%)

Query: 31  PSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMP 90
           PS +K+ + A+       QLH   L++ S   P + ++++S+Y+  +    +  +F+ +P
Sbjct: 15  PSSVKSKSQAK-------QLHAQILRT-SLPSPSLLSTILSIYSNLNLLHDSLLIFNSLP 66

Query: 91  YRDT-ISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGR 149
              T ++W SII C+T +G ++ SL  F +M   G      +   ++  C+ + +L  G 
Sbjct: 67  SPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGE 126

Query: 150 QIHALVIVDG-SFELSVFVSTALLDLYSKC----------------------------HH 180
            +H  +I  G  F+L  +   AL+++YSK                              +
Sbjct: 127 SVHGCIIRLGMGFDL--YTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESY 184

Query: 181 WLIALR-VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLL 239
           +L +LR VFE M  R+ VSW  +ISG   +  ++  + + R M    ++P   TL+ VL 
Sbjct: 185 YLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLP 244

Query: 240 ACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVV 299
             AE  +L  GK IHGYA   G+D D  + ++L+ MY +CT      R+ +   +  D +
Sbjct: 245 IFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQ-HDGI 303

Query: 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
            W+SII G  Q+G   E +K F +M + +I+PN V+  +I+ +C   + L  G  +H YI
Sbjct: 304 SWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYI 363

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEAL 419
           +++  + +V I +AL++MY+KCG+I ++  IF++M   D VSWT +I GY  HG+  +A+
Sbjct: 364 IRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAI 423

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479
            LF  M+  GV+P+ +  +A+L+AC+HAGLV EA   FN++ ++ +I   +EHYA   DL
Sbjct: 424 SLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADL 483

Query: 480 LGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANY 539
           LG+ G++E+A + +S M ++P+  + S+L++ACR+H  +E+AE ++ +L   +P+N   Y
Sbjct: 484 LGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAY 543

Query: 540 TLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            LLS + S +G W  A ++   MR KG+ K    S IE
Sbjct: 544 VLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIE 581



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 131/471 (27%), Positives = 240/471 (50%), Gaps = 43/471 (9%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF---- 76
           SG Y +  + PSV+K+C   +  + FG  +H   ++ G   D    N+L++MY+KF    
Sbjct: 100 SGKYPDHNVFPSVLKSCTLMKDLR-FGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLE 158

Query: 77  ------------------SKPE-------SAYQLFDEMPYRDTISWNSIINCFTQNGFYV 111
                             SK E       S  ++F+ MP RD +SWN++I+   QNG + 
Sbjct: 159 EVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHE 218

Query: 112 RSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTAL 171
            +L M REM        +  L+ ++ + ++   L  G++IH   I +G ++  VF+ ++L
Sbjct: 219 DALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNG-YDADVFIGSSL 277

Query: 172 LDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTR 231
           +D+Y+KC     + RVF  +   + +SW ++I+GC+ +  +D G+  F+ M    +KP  
Sbjct: 278 IDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNH 337

Query: 232 VTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFE 291
           V+ + ++ ACA L  L  GK +HGY     FD +  +++AL+ MY +C   +  AR IF+
Sbjct: 338 VSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGN-IRTARWIFD 396

Query: 292 RTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSH 351
           + ++ D+V W+++I GY+  G   +A+ LF RM +E ++PN V  +A+L++C+    +  
Sbjct: 397 KMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDE 456

Query: 352 GLGVHCYIMKAGLNFDVSIG----NALMNMYSKCGSITSSHQIFNEMAARDFVS-WTTLI 406
                 Y      ++ +  G     A+ ++  + G +  +++  ++M      S W+TL+
Sbjct: 457 AWK---YFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLL 513

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC-NHAGLVKEAETL 456
           +    H   E A ++  ++    V+P  I    +LS   + AG  K+A  L
Sbjct: 514 AACRVHKNIELAEKVSKKL--FTVDPQNIGAYVLLSNIYSAAGRWKDARKL 562


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 182/557 (32%), Positives = 304/557 (54%), Gaps = 3/557 (0%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           SG+         V+ AC  ++     G Q+H   ++ G + D   +N+L+ MY K  + +
Sbjct: 196 SGIQPTEFGFSCVVNACTGSRNIDA-GRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVD 254

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
            A  +F++MP  D +SWN++I+    NG   R++E+  +M   G V    +L+ I+  C+
Sbjct: 255 IASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACA 314

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
             G  +LGRQIH  +I   + +   ++   L+D+Y+K H    A++VF+ M  R+ + W 
Sbjct: 315 GAGAFDLGRQIHGFMI-KANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWN 373

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
           A+ISGC     +D    +F  +++EG+   R TL  VL + A L      + +H  A   
Sbjct: 374 ALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKI 433

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
           GF FD H+   L+  Y +C+  L  A  +FE     D++  +S+I   SQ      A+KL
Sbjct: 434 GFIFDAHVVNGLIDSYWKCS-CLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKL 492

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
           F  M  + +EP+   L ++L++C   S    G  VH +++K     D   GNAL+  Y+K
Sbjct: 493 FMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAK 552

Query: 381 CGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
           CGSI  +   F+ +  R  VSW+ +I G   HG+G+ AL+LF  M + G+ P+ IT+ ++
Sbjct: 553 CGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSV 612

Query: 441 LSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKP 500
           L ACNHAGLV EA+  FN++ +   I    EHY+C +DLLG++GK++DA ++V++MP + 
Sbjct: 613 LCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQA 672

Query: 501 STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWR 560
           +  +  +L+ A R+H   E+ ++ A +L   EPE +  + LL+   + SG W    +V +
Sbjct: 673 NASVWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRK 732

Query: 561 VMRAKGLSKSYGFSRIE 577
           +M+   + K    S +E
Sbjct: 733 LMKDSNIKKEPAMSWVE 749



 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 120/398 (30%), Positives = 205/398 (51%), Gaps = 8/398 (2%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G  LH   LKSG  A   + N LIS Y+K  +P  A ++FDE+P    +SW+S++  ++ 
Sbjct: 23  GAHLHANLLKSGFLAS--LRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSN 80

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           NG    +++ F  M   G V   E    ++  C  + + +LG Q+HA+ +  G F   VF
Sbjct: 81  NGLPRSAIQAFHGMRAEG-VCCNEFALPVVLKC--VPDAQLGAQVHAMAMATG-FGSDVF 136

Query: 167 VSTALLDLYSKCHHWLIALRVFEQM-VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
           V+ AL+ +Y        A RVF++    RN VSW  ++S  + +      I +F  M   
Sbjct: 137 VANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWS 196

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
           G++PT    + V+ AC   R++  G+ +H      G++ D   + AL+ MY +    +  
Sbjct: 197 GIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGR-VDI 255

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           A +IFE+    DVV W+++I G   +G    A++L  +M+   + PN   L +IL +C  
Sbjct: 256 ASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAG 315

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
                 G  +H +++KA  + D  IG  L++MY+K   +  + ++F+ M+ RD + W  L
Sbjct: 316 AGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNAL 375

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
           ISG    G  +EA  +F  +++ G+  +  T+ A+L +
Sbjct: 376 ISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKS 413



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 121/422 (28%), Positives = 202/422 (47%), Gaps = 12/422 (2%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           ++  SGL  N  +L S++KACA A      G Q+H   +K+ +D+D  I   L+ MYAK 
Sbjct: 293 QMKSSGLVPNVFMLSSILKACAGAGAFD-LGRQIHGFMIKANADSDDYIGVGLVDMYAKN 351

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
              + A ++FD M +RD I WN++I+  +  G +  +  +F  +   G  +    LA ++
Sbjct: 352 HFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVL 411

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
              + +      RQ+HAL    G F     V   L+D Y KC     A+RVFE+    + 
Sbjct: 412 KSTASLEAASATRQVHALAEKIG-FIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDI 470

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           ++ T+MI+      + +  I LF  M R+G++P    L+ +L ACA L     GK +H +
Sbjct: 471 IAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAH 530

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
                F  D     AL++ Y +C  ++  A + F     + VV WS++I G +Q G    
Sbjct: 531 LIKRQFMSDAFAGNALVYTYAKCG-SIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKR 589

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG--NAL 374
           A++LF RM  E I PN +T+ ++L +C     +      +   MK     D +    + +
Sbjct: 590 ALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEA-KRYFNSMKEMFGIDRTEEHYSCM 648

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVS-WTTLISGYGFHGYGE----EALQLF-LEMQES 428
           +++  + G +  + ++ N M  +   S W  L+     H   E     A +LF LE ++S
Sbjct: 649 IDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKS 708

Query: 429 GV 430
           G 
Sbjct: 709 GT 710



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 99/356 (27%), Positives = 171/356 (48%), Gaps = 15/356 (4%)

Query: 171 LLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPT 230
           L+  YSKC     A RVF+++     VSW+++++   ++    + I  F  M+ EGV   
Sbjct: 43  LISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCN 102

Query: 231 RVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIF 290
              L +VL  C  + D + G  +H  A   GF  D  ++ AL+ MY          R+  
Sbjct: 103 EFALPVVL-KC--VPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFD 159

Query: 291 ERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLS 350
           E    ++ V W+ ++  Y ++    +A+++F  M    I+P       ++++CT    + 
Sbjct: 160 EAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNID 219

Query: 351 HGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYG 410
            G  VH  +++ G   DV   NAL++MY K G +  +  IF +M   D VSW  LISG  
Sbjct: 220 AGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCV 279

Query: 411 FHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK-----EKK 465
            +G+   A++L L+M+ SG+ P+   + +IL AC  AG       +   ++K     +  
Sbjct: 280 LNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDY 339

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA 521
           I + +      VD+  K+  ++DA KV   M  +    + ++L+S C   GR + A
Sbjct: 340 IGVGL------VDMYAKNHFLDDAMKVFDWMSHR-DLILWNALISGCSHGGRHDEA 388


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 183/561 (32%), Positives = 306/561 (54%), Gaps = 3/561 (0%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           E+  SG+         V+ AC  ++     G Q+H   ++ G + D   +N+L+ MY K 
Sbjct: 99  EMVWSGIQPTEFGFSCVVNACTGSRNIDA-GRQVHAMVVRMGYEKDVFTANALVDMYVKM 157

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
            + + A  +F++MP  D +SWN++I+    NG   R++E+  +M   G V    +L+ I+
Sbjct: 158 GRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSIL 217

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
             C+  G  +LGRQIH  +I   + +   ++   L+D+Y+K H    A++VF+ M  R+ 
Sbjct: 218 KACAGAGAFDLGRQIHGFMI-KANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDL 276

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           + W A+ISGC     +D    +F  +++EG+   R TL  VL + A L      + +H  
Sbjct: 277 ILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHAL 336

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
           A   GF FD H+   L+  Y +C+  L  A  +FE     D++  +S+I   SQ      
Sbjct: 337 AEKIGFIFDAHVVNGLIDSYWKCS-CLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEG 395

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
           A+KLF  M  + +EP+   L ++L++C   S    G  VH +++K     D   GNAL+ 
Sbjct: 396 AIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVY 455

Query: 377 MYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAIT 436
            Y+KCGSI  +   F+ +  R  VSW+ +I G   HG+G+ AL+LF  M + G+ P+ IT
Sbjct: 456 TYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHIT 515

Query: 437 VLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
           + ++L ACNHAGLV EA+  FN++ +   I    EHY+C +DLLG++GK++DA ++V++M
Sbjct: 516 MTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSM 575

Query: 497 PMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAE 556
           P + +  +  +L+ A R+H   E+ ++ A +L   EPE +  + LL+   + SG W    
Sbjct: 576 PFQANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVA 635

Query: 557 EVWRVMRAKGLSKSYGFSRIE 577
           +V ++M+   + K    S +E
Sbjct: 636 KVRKLMKDSNIKKEPAMSWVE 656



 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 160/564 (28%), Positives = 287/564 (50%), Gaps = 13/564 (2%)

Query: 18  LHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFS 77
           +   G+  N   LP V+K    AQ     G Q+H  A+ +G  +D  ++N+L++MY  F 
Sbjct: 1   MRAEGVCCNEFALPVVLKCVPDAQ----LGAQVHAMAMATGFGSDVFVANALVAMYGGFG 56

Query: 78  KPESAYQLFDEM-PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
             + A ++FDE    R+ +SWN +++ + +N     ++++F EM   G        + ++
Sbjct: 57  FMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVV 116

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
           + C+    ++ GRQ+HA+V+  G +E  VF + AL+D+Y K     IA  +FE+M   + 
Sbjct: 117 NACTGSRNIDAGRQVHAMVVRMG-YEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDV 175

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           VSW A+ISGC+ + +    I+L   M+  G+ P    L+ +L ACA       G+ IHG+
Sbjct: 176 VSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGF 235

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
                 D D ++   L+ MY +    L  A  +F+    +D+++W+++I G S  G   E
Sbjct: 236 MIKANADSDDYIGVGLVDMYAK-NHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDE 294

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
           A  +F  +R E +  N  TL A+L S       S    VH    K G  FD  + N L++
Sbjct: 295 AFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLID 354

Query: 377 MYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAIT 436
            Y KC  ++ + ++F E ++ D ++ T++I+      +GE A++LF+EM   G+EPD   
Sbjct: 355 SYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFV 414

Query: 437 VLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
           + ++L+AC      ++ + +  +++K + ++ A    A  V    K G IEDA    S++
Sbjct: 415 LSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNA-LVYTYAKCGSIEDAELAFSSL 473

Query: 497 PMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAE 556
           P +      S+++     HG  + A  L  ++++ E  N  + T+ S++C+ +   L  +
Sbjct: 474 PERGVVS-WSAMIGGLAQHGHGKRALELFGRMVD-EGINPNHITMTSVLCACNHAGL-VD 530

Query: 557 EVWRVMRAKGLSKSYGFSRIENEY 580
           E  R   +  + + +G  R E  Y
Sbjct: 531 EAKRYFNS--MKEMFGIDRTEEHY 552


>gi|297833652|ref|XP_002884708.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330548|gb|EFH60967.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1028

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 186/563 (33%), Positives = 302/563 (53%), Gaps = 5/563 (0%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           ++  SG   +     S++  CA +   +  G Q H   +K     +  + N+L+ MYAK 
Sbjct: 418 DMKSSGYNIDDFTFTSLLSTCAVSHDLE-MGSQFHSIIIKKKLTKNLFVGNALVDMYAKC 476

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
              E A Q+F+ M  RD +SWN+II  + Q+     + ++F  M  CG V     LA  +
Sbjct: 477 GALEDARQIFEHMCDRDNVSWNTIIGGYVQDENESEAFDLFMRMNSCGIVSDGACLASTL 536

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
             C+ +  L  G+Q+H L +  G  +  +   ++L+D+YSKC     A +VF  M   + 
Sbjct: 537 KACTNVHGLYQGKQVHCLSVKCG-LDRVLHTGSSLIDMYSKCGIIEDARKVFSSMPEWSV 595

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           VS  A+I+G     N +  + LF+ M  +GV P+ +T   ++ AC +   L  G   HG 
Sbjct: 596 VSMNALIAG-YSQNNLEEAVVLFQEMLTKGVNPSEITFATIVEACHKPESLTLGTQFHGQ 654

Query: 257 AYCCGFDFD-HHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
               GF  +  +L  +L+ +Y           +  E +  K +V+W+ ++ G+SQ+G   
Sbjct: 655 IIKWGFSSEGEYLGISLLGLYMNSRRMAEACALFSELSSPKSIVLWTGMMSGHSQNGFYE 714

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           EA+K +  MR +   P+  T + +L  C+  S L  G  +H  I     + D    N L+
Sbjct: 715 EALKFYKEMRHDGALPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLI 774

Query: 376 NMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           +MY+KCG + SS Q+F+EM  R + VSW +LI+GY  +GY E+AL++F  M++S + PD 
Sbjct: 775 DMYAKCGDMKSSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDE 834

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS 494
           IT L +L+AC+HAG V +   +F  ++ +  I   ++H AC VDLLG+ G +++A   + 
Sbjct: 835 ITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIE 894

Query: 495 TMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLG 554
              +KP  R+ SSL+ ACRIHG     E+ A +LIE EP+N++ Y LLS + +  G W  
Sbjct: 895 AQNLKPDARLWSSLLGACRIHGDDMRGEIAAERLIELEPQNSSAYVLLSNIYASQGRWEE 954

Query: 555 AEEVWRVMRAKGLSKSYGFSRIE 577
           A  + + MR +G+ K  G+S I+
Sbjct: 955 ANALRKAMRDRGVKKVPGYSWID 977



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 148/555 (26%), Positives = 278/555 (50%), Gaps = 14/555 (2%)

Query: 14  YKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMY 73
           Y   +  S + S  + L SV+ A      +   GL +H  A+K G  ++  + +SL+SMY
Sbjct: 314 YFLNMRKSSVKSTRSTLGSVLSAIGIV-ANLDLGLVVHAEAIKLGLASNIYVGSSLVSMY 372

Query: 74  AKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLA 133
           +K  K E+A ++F+ +  R+ + WN++I  +  NG   + +E+F +M   G+ +      
Sbjct: 373 SKCEKMEAAAKVFEALEERNDVLWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFT 432

Query: 134 GIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI 193
            ++S C+   +LE+G Q H+ +I+      ++FV  AL+D+Y+KC     A ++FE M  
Sbjct: 433 SLLSTCAVSHDLEMGSQFHS-IIIKKKLTKNLFVGNALVDMYAKCGALEDARQIFEHMCD 491

Query: 194 RNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAI 253
           R+ VSW  +I G +  +N     DLF  M   G+      L   L AC  +  L  GK +
Sbjct: 492 RDNVSWNTIIGGYVQDENESEAFDLFMRMNSCGIVSDGACLASTLKACTNVHGLYQGKQV 551

Query: 254 HGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGD 313
           H  +  CG D   H  ++L+ MY +C   +  AR +F       VV  +++I GYSQ+ +
Sbjct: 552 HCLSVKCGLDRVLHTGSSLIDMYSKCG-IIEDARKVFSSMPEWSVVSMNALIAGYSQN-N 609

Query: 314 LSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS-IGN 372
           L EA+ LF  M  + + P+ +T   I+ +C +   L+ G   H  I+K G + +   +G 
Sbjct: 610 LEEAVVLFQEMLTKGVNPSEITFATIVEACHKPESLTLGTQFHGQIIKWGFSSEGEYLGI 669

Query: 373 ALMNMYSKCGSITSSHQIFNEMAA-RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
           +L+ +Y     +  +  +F+E+++ +  V WT ++SG+  +G+ EEAL+ + EM+  G  
Sbjct: 670 SLLGLYMNSRRMAEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGAL 729

Query: 432 PDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYA--CYVDLLGKSGKIEDA 489
           PD  T + +L  C+    ++E   + + +     +A  ++       +D+  K G ++ +
Sbjct: 730 PDQATFVTVLRVCSVLSSLREGRAIHSLIF---HLAHDLDELTSNTLIDMYAKCGDMKSS 786

Query: 490 CKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE--PENAANYTLLSMVCS 547
            +V   M  + +    +SL++    +G  E A  +   + ++   P+      +L+  CS
Sbjct: 787 SQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLT-ACS 845

Query: 548 ESGNWLGAEEVWRVM 562
            +G      +++ +M
Sbjct: 846 HAGKVSDGRKIFEMM 860



 Score =  201 bits (512), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 153/495 (30%), Positives = 232/495 (46%), Gaps = 12/495 (2%)

Query: 58  GSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMF 117
           G   D +   ++I+ Y    K + A  LF EMP  D ++WN +I+   + G  + ++E F
Sbjct: 256 GHRPDHLAFVTVINTYISLGKLKDARLLFGEMPSPDVVAWNVMISGHGKRGCEIVAIEYF 315

Query: 118 REMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSK 177
             M           L  ++S    +  L+LG  +HA  I  G    +++V ++L+ +YSK
Sbjct: 316 LNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLG-LASNIYVGSSLVSMYSK 374

Query: 178 CHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIV 237
           C     A +VFE +  RN+V W AMI G   +      ++LF  M+  G      T T +
Sbjct: 375 CEKMEAAAKVFEALEERNDVLWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSL 434

Query: 238 LLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKD 297
           L  CA   DL  G   H          +  +  AL+ MY +C  AL  AR IFE    +D
Sbjct: 435 LSTCAVSHDLEMGSQFHSIIIKKKLTKNLFVGNALVDMYAKCG-ALEDARQIFEHMCDRD 493

Query: 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHC 357
            V W++II GY Q  + SEA  LF RM    I  +   L + L +CT    L  G  VHC
Sbjct: 494 NVSWNTIIGGYVQDENESEAFDLFMRMNSCGIVSDGACLASTLKACTNVHGLYQGKQVHC 553

Query: 358 YIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEE 417
             +K GL+  +  G++L++MYSKCG I  + ++F+ M     VS   LI+GY  +   EE
Sbjct: 554 LSVKCGLDRVLHTGSSLIDMYSKCGIIEDARKVFSSMPEWSVVSMNALIAGYSQNNL-EE 612

Query: 418 ALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYV 477
           A+ LF EM   GV P  IT   I+ AC+    +         ++   K   + E     +
Sbjct: 613 AVVLFQEMLTKGVNPSEITFATIVEACHKPESLTLGTQFHGQII---KWGFSSEGEYLGI 669

Query: 478 DLLG---KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE--AE 532
            LLG    S ++ +AC + S +    S  + + ++S    +G  E A     ++    A 
Sbjct: 670 SLLGLYMNSRRMAEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGAL 729

Query: 533 PENAANYTLLSMVCS 547
           P+ A   T+L  VCS
Sbjct: 730 PDQATFVTVLR-VCS 743



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 129/467 (27%), Positives = 221/467 (47%), Gaps = 40/467 (8%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPY 91
           S++ + +  +T+  FG Q+HC+ +K G + +     +L+ MYAK  +   A ++FD +  
Sbjct: 164 SIVLSTSARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRLGDAQRVFDGIVD 223

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQI 151
            +T+ W  + + + + G    ++ +F  M   G          +I+    +G+L+  R +
Sbjct: 224 PNTVCWTCLFSGYVKAGLPEEAVIVFERMRGEGHRPDHLAFVTVINTYISLGKLKDARLL 283

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQN 211
                                               F +M   + V+W  MISG      
Sbjct: 284 ------------------------------------FGEMPSPDVVAWNVMISGHGKRGC 307

Query: 212 YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAA 271
               I+ F  M++  VK TR TL  VL A   + +L  G  +H  A   G   + ++ ++
Sbjct: 308 EIVAIEYFLNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSS 367

Query: 272 LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP 331
           L+ MY +C E +  A  +FE  + ++ V+W+++IRGY+ +G+  + M+LF  M+      
Sbjct: 368 LVSMYSKC-EKMEAAAKVFEALEERNDVLWNAMIRGYAHNGESHKVMELFMDMKSSGYNI 426

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIF 391
           +  T  ++LS+C     L  G   H  I+K  L  ++ +GNAL++MY+KCG++  + QIF
Sbjct: 427 DDFTFTSLLSTCAVSHDLEMGSQFHSIIIKKKLTKNLFVGNALVDMYAKCGALEDARQIF 486

Query: 392 NEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC-NHAGLV 450
             M  RD VSW T+I GY       EA  LF+ M   G+  D   + + L AC N  GL 
Sbjct: 487 EHMCDRDNVSWNTIIGGYVQDENESEAFDLFMRMNSCGIVSDGACLASTLKACTNVHGLY 546

Query: 451 KEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
           +  +    +V  +  +   +   +  +D+  K G IEDA KV S+MP
Sbjct: 547 QGKQVHCLSV--KCGLDRVLHTGSSLIDMYSKCGIIEDARKVFSSMP 591



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 116/450 (25%), Positives = 219/450 (48%), Gaps = 39/450 (8%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G  +H  +L  G D++  + N+++ +YAK ++   A + F+ +  +D  +WNS+++ ++ 
Sbjct: 79  GKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFNSLE-KDVTAWNSMLSMYSS 137

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
            G   + L  F  ++           + ++S  ++   +E GRQIH  +I  G  E + +
Sbjct: 138 IGQPGKVLRSFVSLFENLIFPNKFTFSIVLSTSARETNVEFGRQIHCSMIKMG-LERNSY 196

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
              AL+D+Y+KC     A RVF+ +V  N V WT + SG + +   +  + +F  M+ EG
Sbjct: 197 CGGALVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFERMRGEG 256

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
            +P  +    V+     L  L++                                    A
Sbjct: 257 HRPDHLAFVTVINTYISLGKLKD------------------------------------A 280

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
           R++F      DVV W+ +I G+ + G    A++ F  MR   ++    TL ++LS+    
Sbjct: 281 RLLFGEMPSPDVVAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKSTRSTLGSVLSAIGIV 340

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
           + L  GL VH   +K GL  ++ +G++L++MYSKC  + ++ ++F  +  R+ V W  +I
Sbjct: 341 ANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEERNDVLWNAMI 400

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
            GY  +G   + ++LF++M+ SG   D  T  ++LS C  +  + E  + F++++ +KK+
Sbjct: 401 RGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAVSHDL-EMGSQFHSIIIKKKL 459

Query: 467 ALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
              +      VD+  K G +EDA ++   M
Sbjct: 460 TKNLFVGNALVDMYAKCGALEDARQIFEHM 489



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 136/283 (48%), Gaps = 20/283 (7%)

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           LR GKA+H  +   G D +  L  A++ +Y +C +  +  +     +  KDV  W+S++ 
Sbjct: 76  LRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQF--NSLEKDVTAWNSMLS 133

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
            YS  G   + ++ F  +    I PN  T   +LS+  R++ +  G  +HC ++K GL  
Sbjct: 134 MYSSIGQPGKVLRSFVSLFENLIFPNKFTFSIVLSTSARETNVEFGRQIHCSMIKMGLER 193

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           +   G AL++MY+KC  +  + ++F+ +   + V WT L SGY   G  EEA+ +F  M+
Sbjct: 194 NSYCGGALVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFERMR 253

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
             G  PD +  + +++     G +K+A  LF  +     +A     +   +   GK G  
Sbjct: 254 GEGHRPDHLAFVTVINTYISLGKLKDARLLFGEMPSPDVVA-----WNVMISGHGKRG-- 306

Query: 487 EDACKVVS--------TMPMKPSTRILSSLVSACRIHGRLEVA 521
              C++V+           +K +   L S++SA  I   L++ 
Sbjct: 307 ---CEIVAIEYFLNMRKSSVKSTRSTLGSVLSAIGIVANLDLG 346



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 156/359 (43%), Gaps = 53/359 (14%)

Query: 145 LELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMIS 204
           L +G+ +H+  ++ G  +    +  A++DLY+KC     A + F  +  ++  +W +M+S
Sbjct: 76  LRIGKAVHSKSLILG-IDSEGRLGNAIVDLYAKCAQVSYAEKQFNSLE-KDVTAWNSMLS 133

Query: 205 GCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDF 264
                      +  F ++    + P + T +IVL   A   ++  G+ IH      G + 
Sbjct: 134 MYSSIGQPGKVLRSFVSLFENLIFPNKFTFSIVLSTSARETNVEFGRQIHCSMIKMGLER 193

Query: 265 DHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM 324
           + +   AL+ MY +C + L  A+ +F+     + V W+ +  GY ++G   EA+ +F RM
Sbjct: 194 NSYCGGALVDMYAKC-DRLGDAQRVFDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFERM 252

Query: 325 RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSI 384
           R E   P+ +  + ++                                   N Y   G +
Sbjct: 253 RGEGHRPDHLAFVTVI-----------------------------------NTYISLGKL 277

Query: 385 TSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
             +  +F EM + D V+W  +ISG+G  G    A++ FL M++S V+    T+ ++LSA 
Sbjct: 278 KDARLLFGEMPSPDVVAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKSTRSTLGSVLSAI 337

Query: 445 N-----HAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDACKVVSTM 496
                   GLV  AE +        K+ LA   Y  +  V +  K  K+E A KV   +
Sbjct: 338 GIVANLDLGLVVHAEAI--------KLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEAL 388



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 105/212 (49%), Gaps = 8/212 (3%)

Query: 1   MVSKH----FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALK 56
           M+S H    FYE+ L  YK+  H  G   + A   +V++ C+   + +  G  +H     
Sbjct: 703 MMSGHSQNGFYEEALKFYKEMRH-DGALPDQATFVTVLRVCSVLSSLRE-GRAIHSLIFH 760

Query: 57  SGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYR-DTISWNSIINCFTQNGFYVRSLE 115
              D D + SN+LI MYAK    +S+ Q+FDEM  R + +SWNS+IN + +NG+   +L+
Sbjct: 761 LAHDLDELTSNTLIDMYAKCGDMKSSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALK 820

Query: 116 MFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLY 175
           +F  M     +       G+++ CS  G++  GR+I  ++I     E  V     ++DL 
Sbjct: 821 IFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLL 880

Query: 176 SKCHHWLIALRVFEQMVIRNEVS-WTAMISGC 206
            +  +   A    E   ++ +   W++++  C
Sbjct: 881 GRWGYLQEADDFIEAQNLKPDARLWSSLLGAC 912


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 187/569 (32%), Positives = 323/569 (56%), Gaps = 6/569 (1%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           + L L++  +  +G   N+    +V++ CA        G +LH   LK GS+ + +  N+
Sbjct: 250 EALALFRG-MQSAGFPMNSYTSVAVLQVCAELGLLS-LGRELHAALLKCGSELN-IQCNA 306

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           L+ MYAK+ + +SA ++F ++  +D ISWNS+++C+ QN FY  +++ F EM   GF   
Sbjct: 307 LLVMYAKYGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPD 366

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
              +  + S    +  L  GR+ HA  I        + V   L+D+Y KC     + +VF
Sbjct: 367 HACVVSLSSALGHLSRLNNGREFHAYAIKQ-RLHTDLQVGNTLMDMYIKCGSIECSAKVF 425

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
           E M IR+ +SWT +++    S  +   +++   +Q+EG+    + +  +L  C  L+ + 
Sbjct: 426 ESMGIRDHISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCCGLKSIS 485

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
             K +H YA   G   D  L   L+ +Y EC E  H   + F+R + KD+V W+S+I   
Sbjct: 486 LLKQVHCYAIRNGL-LDLILENRLIDIYGECGEFDHSLNL-FQRVEKKDIVSWTSMINCC 543

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
           + +G L+ A+ LF+ M+   I+P+SV L++IL +    S L+ G  VH ++++     + 
Sbjct: 544 TNNGRLNGAVFLFTEMQKANIQPDSVALVSILVAIAGLSSLTKGKQVHGFLIRRNFPIEG 603

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
            + ++L++MYS CGS+  + ++F     +D V WT +I+  G HG+G++A+ LF  M ++
Sbjct: 604 PVVSSLVDMYSGCGSMNYAIRVFERAKCKDVVLWTAMINATGMHGHGKQAIDLFKRMLQT 663

Query: 429 GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIED 488
           G+ PD ++ LA+L AC+H+ LV+E +   + ++ + ++    EHYAC VD+LG+SG+ E+
Sbjct: 664 GLTPDHVSFLALLYACSHSKLVEEGKHYLDIMVSKYRLKPWQEHYACVVDILGRSGQTEE 723

Query: 489 ACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSE 548
           A + + TMPM P + +  +L+ ACR+H    +A + A++L+E EP+N  NY L+S V +E
Sbjct: 724 AYEFIKTMPMDPKSAVWCALLGACRVHRNYGLAVVAANKLLELEPDNPGNYILVSNVFAE 783

Query: 549 SGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            G W  A+E    M  +GL K+   S IE
Sbjct: 784 MGKWNNAKETRTRMAERGLRKNPACSWIE 812



 Score =  226 bits (575), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 154/532 (28%), Positives = 281/532 (52%), Gaps = 12/532 (2%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G   +   L SV+KAC  A+     G ++H  A+K G D   +++N+LI MYAK    +S
Sbjct: 159 GSAPDGCTLASVLKACG-AEGDGRCGGEVHGLAVKVGLDKSTLVANALIGMYAKCGLLDS 217

Query: 82  AYQLFD--EMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLC 139
           A ++F+  +   RD  SWNS+++   QNG  + +L +FR M   GF + +     ++ +C
Sbjct: 218 ALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSYTSVAVLQVC 277

Query: 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSW 199
           +++G L LGR++HA ++  GS EL++  + ALL +Y+K      ALRVF Q+  ++ +SW
Sbjct: 278 AELGLLSLGRELHAALLKCGS-ELNIQCN-ALLVMYAKYGRVDSALRVFGQIAEKDYISW 335

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
            +M+S  + +  Y   ID F  M + G +P    +  +  A   L  L NG+  H YA  
Sbjct: 336 NSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGREFHAYAIK 395

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
                D  +   LM MY +C      A+ +FE   ++D + W++I+  ++QS   SEA++
Sbjct: 396 QRLHTDLQVGNTLMDMYIKCGSIECSAK-VFESMGIRDHISWTTILACFAQSSRHSEALE 454

Query: 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           +   ++ E I  +S+ + +IL +C     +S    VHCY ++ GL  D+ + N L+++Y 
Sbjct: 455 MILELQKEGIMVDSMMIGSILETCCGLKSISLLKQVHCYAIRNGL-LDLILENRLIDIYG 513

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           +CG    S  +F  +  +D VSWT++I+    +G    A+ LF EMQ++ ++PD++ +++
Sbjct: 514 ECGEFDHSLNLFQRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQPDSVALVS 573

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           IL A      + + + +   +++ +   +     +  VD+    G +  A +V      K
Sbjct: 574 ILVAIAGLSSLTKGKQVHGFLIR-RNFPIEGPVVSSLVDMYSGCGSMNYAIRVFERAKCK 632

Query: 500 PSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLSMVCSES 549
               + +++++A  +HG  + A  L  ++++    P++ +   LL   CS S
Sbjct: 633 DVV-LWTAMINATGMHGHGKQAIDLFKRMLQTGLTPDHVSFLALL-YACSHS 682



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 143/506 (28%), Positives = 256/506 (50%), Gaps = 16/506 (3%)

Query: 47  GLQLHCTALKSGS---DADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINC 103
           G Q+H  A+ +GS   D D  ++  L+ MY +  + + A +LF+ MP R   SWN+++  
Sbjct: 76  GRQVHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGA 135

Query: 104 FTQNGFYVRSLEMFREMYLC---GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGS 160
           +  +G    ++ ++  M      G       LA ++  C   G+   G ++H L +  G 
Sbjct: 136 YLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVG- 194

Query: 161 FELSVFVSTALLDLYSKCHHWLIALRVFE--QMVIRNEVSWTAMISGCIDSQNYDTGIDL 218
            + S  V+ AL+ +Y+KC     ALRVFE  Q   R+  SW +++SGC+ +      + L
Sbjct: 195 LDKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALAL 254

Query: 219 FRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCE 278
           FR MQ  G      T   VL  CAEL  L  G+ +H     CG + +   +A L+ MY +
Sbjct: 255 FRGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLKCGSELNIQCNALLV-MYAK 313

Query: 279 CTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLA 338
                   R +F +   KD + W+S++  Y Q+   +EA+  F  M     +P+   +++
Sbjct: 314 YGRVDSALR-VFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVS 372

Query: 339 ILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARD 398
           + S+    S L++G   H Y +K  L+ D+ +GN LM+MY KCGSI  S ++F  M  RD
Sbjct: 373 LSSALGHLSRLNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRD 432

Query: 399 FVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFN 458
            +SWTT+++ +       EAL++ LE+Q+ G+  D++ + +IL  C     +   + +  
Sbjct: 433 HISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCCGLKSISLLKQVHC 492

Query: 459 NVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRL 518
             ++   + L +E+    +D+ G+ G+ + +  +   +  K      +S+++ C  +GRL
Sbjct: 493 YAIRNGLLDLILENR--LIDIYGECGEFDHSLNLFQRVEKKDIVS-WTSMINCCTNNGRL 549

Query: 519 EVAEMLAHQLIEA--EPENAANYTLL 542
             A  L  ++ +A  +P++ A  ++L
Sbjct: 550 NGAVFLFTEMQKANIQPDSVALVSIL 575



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 110/260 (42%), Gaps = 19/260 (7%)

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           S+ ++   + GDL +A++  +     R  P       +L     +   + G  VH + + 
Sbjct: 30  SASLKRLCKEGDLRQALRQLT----TRAPPAREHYGWVLDLVAARRAAAEGRQVHAHAVT 85

Query: 362 AG-LNFDVS--IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEA 418
            G LN D    +   L+ MY +CG +  + ++FN M AR   SW  L+  Y   G   EA
Sbjct: 86  TGSLNEDDDGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGAYLSSGSAGEA 145

Query: 419 LQLFLEMQES---GVEPDAITVLAILSACNHAGLVK---EAETLFNNVMKEKKIALAIEH 472
           ++++  M+ S   G  PD  T+ ++L AC   G  +   E   L   V  +K   +A   
Sbjct: 146 MRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGLDKSTLVA--- 202

Query: 473 YACYVDLLGKSGKIEDACKVVSTMPMKP-STRILSSLVSACRIHGR-LEVAEMLAHQLIE 530
               + +  K G ++ A +V   +          +S+VS C  +GR LE   +       
Sbjct: 203 -NALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSA 261

Query: 531 AEPENAANYTLLSMVCSESG 550
             P N+     +  VC+E G
Sbjct: 262 GFPMNSYTSVAVLQVCAELG 281


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 197/608 (32%), Positives = 318/608 (52%), Gaps = 51/608 (8%)

Query: 18  LHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFS 77
           +H      +    P V KAC    + +  G   H  +  +G  ++  + N+L++MY++  
Sbjct: 118 MHSLSWTPDNYTFPFVFKACGEISSVR-CGDSSHALSRVTGFMSNVFVGNALVAMYSRCG 176

Query: 78  KPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY-LCGFVLKAELLAGII 136
               A ++FDEMP  D +SWNSII  + + G    +LEMF +M    GF      L  ++
Sbjct: 177 SLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVL 236

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
             C+ +G   LG+Q H   +     + ++FV   L+D+Y+K      A  VF  M +++ 
Sbjct: 237 PPCASVGTRSLGKQFHGFAVTSEMIQ-NMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDV 295

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQRE------------------------------- 225
           VSW AM++G      ++  + LF  MQ E                               
Sbjct: 296 VSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQ 355

Query: 226 ----GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDF-------DHHLSAALMH 274
               G+KP  VTL  VL  CA +  L +GK IH YA     D        ++ +   L+ 
Sbjct: 356 MLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLID 415

Query: 275 MYCECTEALHPARIIFER--TKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE--RIE 330
           MY +C + +  AR +F+    K +DVV W+ +I GYSQ GD ++A++L S M  E  +  
Sbjct: 416 MYAKCKK-VDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTR 474

Query: 331 PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN-FDVSIGNALMNMYSKCGSITSSHQ 389
           PN+ T+   L +C   + LS G  +H Y ++   N   + + N L++MY+KCG I  +  
Sbjct: 475 PNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARL 534

Query: 390 IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL 449
           +F+ M  ++ V+WT+L++GYG HGYGEEAL +F EM+  G + D +T+L +L AC+H+G+
Sbjct: 535 VFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGM 594

Query: 450 VKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLV 509
           + +    FN +  +  ++   EHYAC VDLLG++G++  A +++  MPM+P   +  +L+
Sbjct: 595 IDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALL 654

Query: 510 SACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSK 569
           S CRIHG++E+ E  A ++ E    N  +YTLLS + + +G W     +  +MR KG+ K
Sbjct: 655 SCCRIHGKVELGEYAAKKITELASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGIKK 714

Query: 570 SYGFSRIE 577
             G S +E
Sbjct: 715 RPGCSWVE 722



 Score =  195 bits (495), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 141/506 (27%), Positives = 229/506 (45%), Gaps = 52/506 (10%)

Query: 65  ISNSLISMYAKFSKPESAYQLFDEMPYRD--TISWNSIINCFTQNGFYVRSLEMFREMYL 122
           +++ LIS Y        A  L    P  D     WNS+I  +  NG   + L  F  M+ 
Sbjct: 61  LTSHLISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHS 120

Query: 123 CGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL 182
             +         +   C +I  +  G   HAL  V G F  +VFV  AL+ +YS+C    
Sbjct: 121 LSWTPDNYTFPFVFKACGEISSVRCGDSSHALSRVTG-FMSNVFVGNALVAMYSRCGSLS 179

Query: 183 IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE-GVKPTRVTLTIVLLAC 241
            A +VF++M + + VSW ++I            +++F  M  E G +P  +TL  VL  C
Sbjct: 180 DARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPC 239

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A +     GK  HG+A       +  +   L+ MY +    +  A  +F    VKDVV W
Sbjct: 240 ASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFG-MMDEANTVFSNMPVKDVVSW 298

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLER--------------------------------- 328
           ++++ GYSQ G   +A++LF +M+ E+                                 
Sbjct: 299 NAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLS 358

Query: 329 --IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS-------IGNALMNMYS 379
             I+PN VTL+++LS C     L HG  +HCY +K  ++   +       + N L++MY+
Sbjct: 359 SGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYA 418

Query: 380 KCGSITSSHQIFNEMAA--RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE--PDAI 435
           KC  +  +  +F+ ++   RD V+WT +I GY  HG   +AL+L  EM E   +  P+A 
Sbjct: 419 KCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAF 478

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           T+   L AC     +   + +    ++ ++ A+ +    C +D+  K G I DA  V   
Sbjct: 479 TISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDN 538

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVA 521
           M M+ +    +SL++   +HG  E A
Sbjct: 539 M-MEKNEVTWTSLMTGYGMHGYGEEA 563



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 131/514 (25%), Positives = 232/514 (45%), Gaps = 66/514 (12%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           +  L ++ +  +  G   +   L +V+  CA   T +  G Q H  A+ S    +  + N
Sbjct: 210 KMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGT-RSLGKQFHGFAVTSEMIQNMFVGN 268

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMF---------- 117
            L+ MYAKF   + A  +F  MP +D +SWN+++  ++Q G +  ++ +F          
Sbjct: 269 CLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKM 328

Query: 118 -------------------------REMYLCGFVLKAELLAGIISLCSQIGELELGRQIH 152
                                    R+M   G       L  ++S C+ +G L  G++IH
Sbjct: 329 DVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIH 388

Query: 153 ALVI-------VDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI--RNEVSWTAMI 203
              I        +G  + ++ ++  L+D+Y+KC    IA  +F+ +    R+ V+WT MI
Sbjct: 389 CYAIKYPMDLRKNGHGDENMVINQ-LIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMI 447

Query: 204 SGCIDSQNYDTGIDLFRAMQREG--VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
            G     + +  ++L   M  E    +P   T++  L+ACA L  L  GK IH YA    
Sbjct: 448 GGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQ 507

Query: 262 FD-FDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
            +     +S  L+ MY +C + +  AR++F+    K+ V W+S++ GY   G   EA+ +
Sbjct: 508 QNAVPLFVSNCLIDMYAKCGD-IGDARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGI 566

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN----ALMN 376
           F  MR    + + VTLL +L +C+    +  G+    Y  +   +F VS G      L++
Sbjct: 567 FEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGME---YFNRMKTDFGVSPGPEHYACLVD 623

Query: 377 MYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFHG---YGEEALQLFLEMQESGVEP 432
           +  + G + ++ ++  EM      V W  L+S    HG    GE A +   E+  +    
Sbjct: 624 LLGRAGRLNAALRLIEEMPMEPPPVVWVALLSCCRIHGKVELGEYAAKKITELASN--ND 681

Query: 433 DAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
            + T+L+ + A  +AG  K+  T   ++M+ K I
Sbjct: 682 GSYTLLSNMYA--NAGRWKDV-TRIRSLMRHKGI 712



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 142/560 (25%), Positives = 235/560 (41%), Gaps = 86/560 (15%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALK-------SGSDADPVISNS 68
           +++  SG+  N   L SV+  CA      H G ++HC A+K       +G   + ++ N 
Sbjct: 354 RQMLSSGIKPNEVTLISVLSGCASVGALMH-GKEIHCYAIKYPMDLRKNGHGDENMVINQ 412

Query: 69  LISMYAKFSKPESAYQLFDEM--PYRDTISWNSIINCFTQNGFYVRSLEMFREMYL--CG 124
           LI MYAK  K + A  +FD +    RD ++W  +I  ++Q+G   ++LE+  EM+   C 
Sbjct: 413 LIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQ 472

Query: 125 FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
               A  ++  +  C+ +  L +G+QIHA  + +    + +FVS  L+D+Y+KC     A
Sbjct: 473 TRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDA 532

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
             VF+ M+ +NEV+WT++++G       +  + +F  M+R G K   VTL +VL AC+  
Sbjct: 533 RLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSH- 591

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
               +G    G  Y      D  +S    H  C                          +
Sbjct: 592 ----SGMIDQGMEYFNRMKTDFGVSPGPEHYAC--------------------------L 621

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
           +    ++G L+ A++L   M +   EP  V  +A+LS C     +  G      I +   
Sbjct: 622 VDLLGRAGRLNAALRLIEEMPM---EPPPVVWVALLSCCRIHGKVELGEYAAKKITELAS 678

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEM-----AARDFVSWTTLISGYGFHGYGEEAL 419
           N D S    L NMY+  G      +I + M       R   SW   I G      G++  
Sbjct: 679 NNDGSY-TLLSNMYANAGRWKDVTRIRSLMRHKGIKKRPGCSWVEGIKGTTTFFVGDK-- 735

Query: 420 QLFLEMQESGVEPDAITVLAILS----ACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC 475
                       P A  +  +LS         G V E     ++V  E+K  L  EH   
Sbjct: 736 ----------THPHAKEIYQVLSDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEH--- 782

Query: 476 YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE--- 532
                  S K+  A  +++T P   + RI  +L    R+ G    A     ++I+ E   
Sbjct: 783 -------SEKLALAYGILTT-PQGAAIRITKNL----RVCGDCHTAFTYMSRIIDHEIIL 830

Query: 533 PENAANYTLLSMVCSESGNW 552
            +++  +   + +CS  G W
Sbjct: 831 RDSSRFHHFKNGLCSCKGYW 850



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 115/233 (49%), Gaps = 3/233 (1%)

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           W+S+IR Y  +G  ++ +  F  M      P++ T   +  +C   S +  G   H    
Sbjct: 95  WNSLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGDSSHALSR 154

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
             G   +V +GNAL+ MYS+CGS++ + ++F+EM   D VSW ++I  Y   G  + AL+
Sbjct: 155 VTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALE 214

Query: 421 LFLEM-QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479
           +F +M  E G  PD IT++ +L  C   G  +     F+      ++   +    C VD+
Sbjct: 215 MFSKMTNEFGFRPDDITLVNVLPPCASVG-TRSLGKQFHGFAVTSEMIQNMFVGNCLVDM 273

Query: 480 LGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE 532
             K G +++A  V S MP+K      +++V+     GR E A  L  Q+ E +
Sbjct: 274 YAKFGMMDEANTVFSNMPVKDVVS-WNAMVAGYSQIGRFEDAVRLFEQMQEEK 325


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 188/556 (33%), Positives = 308/556 (55%), Gaps = 6/556 (1%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           N    P V+KAC+ A      G  +H  A  +G   D  +S +LI +Y + ++   A  +
Sbjct: 99  NKYTFPFVLKACS-ALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNV 157

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY-LCGFVLKAELLAGIISLCSQIGE 144
           F +MP RD ++WN+++  +  +G Y  ++    +M    G    A  L  ++ L +Q G 
Sbjct: 158 FAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGA 217

Query: 145 LELGRQIHA--LVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAM 202
           L  G  IHA  L       E  V + TALLD+Y+KC   + A RVF  M +RN+V+W+A+
Sbjct: 218 LFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSAL 277

Query: 203 ISGCIDSQNYDTGIDLFRAMQREGV-KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           I G +         +LF+ M  EG+   +  ++   L  CA L DL  G  +H      G
Sbjct: 278 IGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSG 337

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
              D   S +L+ MY +    ++ A + F+   VKD + + +++ G  Q+G   EA  +F
Sbjct: 338 IHADLTASNSLLSMYAKAG-LINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVF 396

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
            +M+   +EP+  T+++++ +C+  + L HG   H  ++  GL  + SI N+L++MY+KC
Sbjct: 397 KKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKC 456

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
           G I  S Q+F++M ARD VSW T+I+GYG HG G+EA  LFL M+  G  PD +T + ++
Sbjct: 457 GKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLI 516

Query: 442 SACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPS 501
           +AC+H+GLV E +  F+ +  +  I   +EHY C VDLL + G +++A + + +MP+K  
Sbjct: 517 AACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKAD 576

Query: 502 TRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRV 561
            R+  +L+ ACRIH  +++ + ++  + +  PE   N+ LLS + S +G +  A EV  +
Sbjct: 577 VRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRII 636

Query: 562 MRAKGLSKSYGFSRIE 577
            + KG  KS G+S IE
Sbjct: 637 QKVKGFKKSPGYSWIE 652



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/373 (27%), Positives = 171/373 (45%), Gaps = 49/373 (13%)

Query: 183 IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
           +A +VF+++   +  ++ A+I        +   IDL+R+M R  V P + T   VL AC+
Sbjct: 52  LARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKACS 111

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
            L DLR G+ IH +A   G   D  +S AL+ +Y  C     PAR +F +  ++DVV W+
Sbjct: 112 ALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCAR-FGPARNVFAKMPMRDVVAWN 170

Query: 303 SIIRGYSQSGDLSEAMK-LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           +++ GY+  G    A+  L        + PN+ TL+++L    +   L  G  +H Y ++
Sbjct: 171 AMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLR 230

Query: 362 AGLNFD---VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEA 418
           A L  +   V IG AL++MY+KC  +  + ++F+ M  R+ V+W+ LI G+       EA
Sbjct: 231 ACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEA 290

Query: 419 LQLFLEM------------------------------------QESGVEPDAITVLAILS 442
             LF +M                                     +SG+  D     ++LS
Sbjct: 291 FNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLS 350

Query: 443 ACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP---MK 499
               AGL+ EA   F+ +  +  I+       C      ++GK E+A  V   M    M+
Sbjct: 351 MYAKAGLINEATMFFDEIAVKDTISYGALLSGCV-----QNGKAEEAFLVFKKMQACNME 405

Query: 500 PSTRILSSLVSAC 512
           P    + SL+ AC
Sbjct: 406 PDIATMVSLIPAC 418


>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
 gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
          Length = 897

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 197/570 (34%), Positives = 317/570 (55%), Gaps = 6/570 (1%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           + L L+K E+   G+  + +I  S+ ++CA A +    G +LH  ALKS   +D ++  +
Sbjct: 265 EGLELFK-EMQGVGVGVSQSIYASLFRSCA-ALSALRLGKELHSHALKSAFGSDIIVGTA 322

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
            + MYAK  +   A ++   MP     S+N+II  + ++    ++L+ F+ +   G    
Sbjct: 323 TLDMYAKCGRMADAQKVLSSMPKCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFD 382

Query: 129 AELLAGIISLCSQI-GELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
              L+G ++ C+ I G+LE GRQ+H L +   S   ++ V+ A+LD+Y KC     A  +
Sbjct: 383 EITLSGALNACASIRGDLE-GRQVHGLAVKSISMS-NICVANAILDMYGKCKALAEASDL 440

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F+ M  R+ VSW A+I+ C  + N +  +  F +M    ++P   T   VL ACA  + L
Sbjct: 441 FDMMERRDAVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQAL 500

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
             G  IH      G  FD  + AAL+ MYC+C   +  A  I +RT+ K +V W++II G
Sbjct: 501 NTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCG-MIEKADKIHDRTEQKTMVSWNAIISG 559

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
           +S      +A K FSRM    + P++ T  A+L +C   + +  G  +H  I+K  L  D
Sbjct: 560 FSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCANLATVGLGKQIHAQIIKQELQSD 619

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
           V I + L++MYSKCG++  S  +F +   RDFV+W  ++ GY  HG GEEAL+LF  MQ 
Sbjct: 620 VYICSTLVDMYSKCGNMQDSQLMFEKAPNRDFVTWNAMLCGYAHHGLGEEALKLFESMQL 679

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487
             V+P+  T +++L AC H GLV +    F+ ++ E  +    EHY+C VD+LG+SG+I+
Sbjct: 680 VNVKPNHATFVSVLRACAHMGLVDKGLHYFDVMLSEYGLDPQSEHYSCMVDILGRSGRID 739

Query: 488 DACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCS 547
           +A  +V  MP +    I  +L+S C+IHG +EVAE     L++ +P++++   LLS + +
Sbjct: 740 EALNLVQKMPFEADAVIWRNLLSVCKIHGNVEVAEKATRALLQLDPQDSSACVLLSNIYA 799

Query: 548 ESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           ++G W    E+ ++MR   L K  G S IE
Sbjct: 800 DAGMWGNVSEMRKMMRHNKLKKEPGCSWIE 829



 Score =  237 bits (604), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 155/530 (29%), Positives = 271/530 (51%), Gaps = 11/530 (2%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           E+   G+  + A L  V+KAC  A      G+Q+H   +K G D D V  ++L+ MYAK 
Sbjct: 171 EMGRCGVGFDRASLAVVLKACG-ALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKC 229

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
            + + +  +F E+P ++ +SW+++I    QN   V  LE+F+EM   G  +   + A + 
Sbjct: 230 KRLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLF 289

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
             C+ +  L LG+++H+  +   +F   + V TA LD+Y+KC     A +V   M   + 
Sbjct: 290 RSCAALSALRLGKELHSHAL-KSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSL 348

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
            S+ A+I G   S      +  F+ + + G+    +TL+  L ACA +R    G+ +HG 
Sbjct: 349 QSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQVHGL 408

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
           A       +  ++ A++ MY +C +AL  A  +F+  + +D V W++II    Q+G+  E
Sbjct: 409 AVKSISMSNICVANAILDMYGKC-KALAEASDLFDMMERRDAVSWNAIIAACEQNGNEEE 467

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
            +  F+ M   R+EP+  T  ++L +C  +  L+ G+ +H  I+K+G+ FD  +G AL++
Sbjct: 468 TLAHFASMIHSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSFVGAALVD 527

Query: 377 MYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAIT 436
           MY KCG I  + +I +    +  VSW  +ISG+      E+A + F  M E GV PD  T
Sbjct: 528 MYCKCGMIEKADKIHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFT 587

Query: 437 VLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC--YVDLLGKSGKIEDACKVVS 494
             A+L  C +   V   + +   ++K++   L  + Y C   VD+  K G ++D+  +  
Sbjct: 588 YAAVLDTCANLATVGLGKQIHAQIIKQE---LQSDVYICSTLVDMYSKCGNMQDSQLMFE 644

Query: 495 TMPMKPSTRILSSLVSACRIHGRLEVAEML--AHQLIEAEPENAANYTLL 542
             P +      ++++     HG  E A  L  + QL+  +P +A   ++L
Sbjct: 645 KAPNRDFV-TWNAMLCGYAHHGLGEEALKLFESMQLVNVKPNHATFVSVL 693



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 137/433 (31%), Positives = 224/433 (51%), Gaps = 7/433 (1%)

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D V  NS+IS YA   + + A + F EMP RD +SWNS+I+ F QNG   +S+++F EM 
Sbjct: 114 DVVSYNSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFLEMG 173

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
            CG       LA ++  C  + E ++G Q+H LV+  G F+  V   +ALL +Y+KC   
Sbjct: 174 RCGVGFDRASLAVVLKACGALEECDMGVQVHGLVVKFG-FDCDVVTGSALLGMYAKCKRL 232

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             +L VF ++  +N VSW+AMI+GC+ +     G++LF+ MQ  GV  ++     +  +C
Sbjct: 233 DDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSC 292

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A L  LR GK +H +A    F  D  +  A + MY +C       +++    K   +  +
Sbjct: 293 AALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCS-LQSY 351

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           ++II GY++S    +A+K F  +    +  + +TL   L++C        G  VH   +K
Sbjct: 352 NAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQVHGLAVK 411

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
           +    ++ + NA+++MY KC ++  +  +F+ M  RD VSW  +I+    +G  EE L  
Sbjct: 412 SISMSNICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAH 471

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDL 479
           F  M  S +EPD  T  ++L AC     +     +   ++K     +  + +  A  VD+
Sbjct: 472 FASMIHSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKS---GMGFDSFVGAALVDM 528

Query: 480 LGKSGKIEDACKV 492
             K G IE A K+
Sbjct: 529 YCKCGMIEKADKI 541



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 119/431 (27%), Positives = 201/431 (46%), Gaps = 39/431 (9%)

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
           K    + I   CS+   L  G+Q HA +I  G FE + FVS  L+ +Y KC +   A +V
Sbjct: 48  KIRTFSHIYQECSKQNSLNPGKQAHARMIFCG-FEPTTFVSNCLMQMYIKCLYLDYACKV 106

Query: 188 FEQMVIRNEVS-------------------------------WTAMISGCIDSQNYDTGI 216
           F++M +R+ VS                               W ++ISG + +      I
Sbjct: 107 FDKMYLRDVVSYNSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSI 166

Query: 217 DLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMY 276
           D+F  M R GV   R +L +VL AC  L +   G  +HG     GFD D    +AL+ MY
Sbjct: 167 DVFLEMGRCGVGFDRASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMY 226

Query: 277 CECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTL 336
            +C   L  +  +F     K+ V WS++I G  Q+    E ++LF  M+   +  +    
Sbjct: 227 AKCKR-LDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIY 285

Query: 337 LAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA 396
            ++  SC   S L  G  +H + +K+    D+ +G A ++MY+KCG +  + ++ + M  
Sbjct: 286 ASLFRSCAALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPK 345

Query: 397 RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETL 456
               S+  +I GY     G +AL+ F  + ++G+  D IT+   L+AC  A +  + E  
Sbjct: 346 CSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNAC--ASIRGDLEGR 403

Query: 457 FNNVMKEKKIALA-IEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIH 515
             + +  K I+++ I      +D+ GK   + +A  +   M  + +    +++++AC  +
Sbjct: 404 QVHGLAVKSISMSNICVANAILDMYGKCKALAEASDLFDMMERRDAVS-WNAIIAACEQN 462

Query: 516 GRLEVAEMLAH 526
           G  E  E LAH
Sbjct: 463 GNEE--ETLAH 471



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 145/307 (47%), Gaps = 34/307 (11%)

Query: 223 QREGVKPTRV-TLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTE 281
           Q +   P ++ T + +   C++   L  GK  H     CGF+    +S  LM MY +C  
Sbjct: 40  QNQTQPPAKIRTFSHIYQECSKQNSLNPGKQAHARMIFCGFEPTTFVSNCLMQMYIKCL- 98

Query: 282 ALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM-RLERIEPNSV------ 334
            L  A  +F++  ++DVV ++SII GY+  G++  A K F  M   + +  NSV      
Sbjct: 99  YLDYACKVFDKMYLRDVVSYNSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQ 158

Query: 335 ------------------------TLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSI 370
                                   +L  +L +C        G+ VH  ++K G + DV  
Sbjct: 159 NGECRKSIDVFLEMGRCGVGFDRASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVT 218

Query: 371 GNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV 430
           G+AL+ MY+KC  +  S  +F+E+  +++VSW+ +I+G   +    E L+LF EMQ  GV
Sbjct: 219 GSALLGMYAKCKRLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGV 278

Query: 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDAC 490
                   ++  +C     ++  + L ++ +K    +  I   A  +D+  K G++ DA 
Sbjct: 279 GVSQSIYASLFRSCAALSALRLGKELHSHALKSAFGSDIIVGTAT-LDMYAKCGRMADAQ 337

Query: 491 KVVSTMP 497
           KV+S+MP
Sbjct: 338 KVLSSMP 344



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 98/232 (42%), Gaps = 39/232 (16%)

Query: 321 FSRMRLERIEPNSV--TLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMY 378
           FS +   + +P +   T   I   C++Q+ L+ G   H  ++  G      + N LM MY
Sbjct: 35  FSTLAQNQTQPPAKIRTFSHIYQECSKQNSLNPGKQAHARMIFCGFEPTTFVSNCLMQMY 94

Query: 379 SK-------------------------------CGSITSSHQIFNEMAARDFVSWTTLIS 407
            K                               CG +  + + F EM  RD VSW ++IS
Sbjct: 95  IKCLYLDYACKVFDKMYLRDVVSYNSIISGYASCGEMDIARKFFYEMPERDVVSWNSVIS 154

Query: 408 GYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAE--TLFNNVMKEKK 465
           G+  +G   +++ +FLEM   GV  D  ++  +L AC   G ++E +     + ++ +  
Sbjct: 155 GFLQNGECRKSIDVFLEMGRCGVGFDRASLAVVLKAC---GALEECDMGVQVHGLVVKFG 211

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGR 517
               +   +  + +  K  +++D+  V S +P K      S++++ C  + R
Sbjct: 212 FDCDVVTGSALLGMYAKCKRLDDSLSVFSELPEKNWVS-WSAMIAGCVQNDR 262


>gi|357129947|ref|XP_003566620.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Brachypodium distachyon]
          Length = 902

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 189/568 (33%), Positives = 320/568 (56%), Gaps = 7/568 (1%)

Query: 11  LHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLI 70
           + LY + L   GL ++     SV+ ACA+  +H   G Q+ C  +K+  DA   ++N+ +
Sbjct: 288 MFLYMKRL---GLEADEFTYVSVLGACAHLDSHC-LGRQVQCVTIKNCMDASLFVANATL 343

Query: 71  SMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE 130
            M++KF   + A  LF+ + Y+DT+SWN+++   T N     ++ M + M L G      
Sbjct: 344 DMHSKFGAIDDAKTLFNLITYKDTVSWNALLVGLTHNEEDEEAIHMLKGMNLDGVTPDEV 403

Query: 131 LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQ 190
             A +I+ CS I   E G+QIH L +   S   +  V ++L+D YSK        +V  Q
Sbjct: 404 SFATVINACSNIRATETGKQIHCLAM-KHSICSNHAVGSSLIDFYSKHGDVESCRKVLAQ 462

Query: 191 MVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNG 250
           +   + V    +I+G + +   D  IDLF+ + R+G+KP+  T + +L  C  L     G
Sbjct: 463 VDASSIVPRNVLIAGLVQNNREDEAIDLFQQVLRDGLKPSSFTFSSILSGCTGLLSSIIG 522

Query: 251 KAIHGYAYCCGF-DFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
           K +H Y    GF + D  +  +L+  Y +        +++ E    K++V W++I+ GY+
Sbjct: 523 KQVHCYTLKSGFLNDDTSVGVSLVGTYLKARMPEDANKLLIEMPDHKNLVEWTAIVSGYA 582

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
           Q+G   +++  F RMR   + P+ VT  +IL +C+  + LS G  +H  I+K+G     +
Sbjct: 583 QNGYSYQSLLSFWRMRSYDVHPDEVTFASILKACSEMTALSDGKEIHGLIIKSGFGSYKT 642

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
             +A+++MYSKCG I SS + F E+ ++ D   W ++I G+  +GY +EAL LF +MQ+S
Sbjct: 643 ATSAIIDMYSKCGDIISSFEAFKELKSKQDITLWNSMILGFAKNGYADEALLLFQKMQDS 702

Query: 429 GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIED 488
            ++ D +T L +L AC HAGL+ E    F+++ K   I   ++HYAC++DLLG+ G +++
Sbjct: 703 QIKSDEVTFLGVLIACAHAGLISEGRHYFDSMSKVYGIMPRVDHYACFIDLLGRGGHLQE 762

Query: 489 ACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSE 548
           A +V++ +P +P   I ++ ++ACR+H   E  E+ A +L+E EP+N++ Y LLS + + 
Sbjct: 763 AQEVINELPFRPDGVIWATYLAACRMHKDEERGEIAAKELVELEPQNSSTYVLLSNMYAA 822

Query: 549 SGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
           +GNW+ A+     MR KG +K  G S I
Sbjct: 823 AGNWVEAKMAREAMREKGATKFPGCSWI 850



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 141/547 (25%), Positives = 268/547 (48%), Gaps = 12/547 (2%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           +   LYK ++   GL+   +   S++ A A A      G Q+H  A++ G DA+  + +S
Sbjct: 183 EVFGLYK-DMRCWGLWPTRSTFASMLSAAANATAFIE-GRQVHAAAVRHGLDANVFVGSS 240

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           LI++YAK      A  +FD    ++ + WN+++N   +N + V +++MF  M   G    
Sbjct: 241 LINLYAKCGCIGDAILVFDCSGEKNVVMWNAMLNGLVRNEYQVEAIQMFLYMKRLGLEAD 300

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
                 ++  C+ +    LGRQ+   V +    + S+FV+ A LD++SK      A  +F
Sbjct: 301 EFTYVSVLGACAHLDSHCLGRQVQC-VTIKNCMDASLFVANATLDMHSKFGAIDDAKTLF 359

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
             +  ++ VSW A++ G   ++  +  I + + M  +GV P  V+   V+ AC+ +R   
Sbjct: 360 NLITYKDTVSWNALLVGLTHNEEDEEAIHMLKGMNLDGVTPDEVSFATVINACSNIRATE 419

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
            GK IH  A       +H + ++L+  Y +  + +   R +  +     +V  + +I G 
Sbjct: 420 TGKQIHCLAMKHSICSNHAVGSSLIDFYSKHGD-VESCRKVLAQVDASSIVPRNVLIAGL 478

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG--VHCYIMKAG-LN 365
            Q+    EA+ LF ++  + ++P+S T  +ILS CT    LS  +G  VHCY +K+G LN
Sbjct: 479 VQNNREDEAIDLFQQVLRDGLKPSSFTFSSILSGCT--GLLSSIIGKQVHCYTLKSGFLN 536

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAA-RDFVSWTTLISGYGFHGYGEEALQLFLE 424
            D S+G +L+  Y K      ++++  EM   ++ V WT ++SGY  +GY  ++L  F  
Sbjct: 537 DDTSVGVSLVGTYLKARMPEDANKLLIEMPDHKNLVEWTAIVSGYAQNGYSYQSLLSFWR 596

Query: 425 MQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSG 484
           M+   V PD +T  +IL AC+    + + + +   ++K    +      A  +D+  K G
Sbjct: 597 MRSYDVHPDEVTFASILKACSEMTALSDGKEIHGLIIKSGFGSYKTATSA-IIDMYSKCG 655

Query: 485 KIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE-PENAANYTLLS 543
            I  + +    +  K    + +S++     +G  + A +L  ++ +++   +   +  + 
Sbjct: 656 DIISSFEAFKELKSKQDITLWNSMILGFAKNGYADEALLLFQKMQDSQIKSDEVTFLGVL 715

Query: 544 MVCSESG 550
           + C+ +G
Sbjct: 716 IACAHAG 722



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 102/391 (26%), Positives = 193/391 (49%), Gaps = 4/391 (1%)

Query: 56  KSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPY-RDTISWNSIINCFTQ-NGFYVRS 113
           K GS  D V   +++       + E A  L   MP    T++WN++I+ + Q +G     
Sbjct: 125 KMGSSPDRVTCVAVVCALTALGRLEDARTLLHRMPAPSSTVAWNAVISGYAQQSGIEHEV 184

Query: 114 LEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLD 173
             ++++M   G        A ++S  +       GRQ+HA  +  G  + +VFV ++L++
Sbjct: 185 FGLYKDMRCWGLWPTRSTFASMLSAAANATAFIEGRQVHAAAVRHG-LDANVFVGSSLIN 243

Query: 174 LYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVT 233
           LY+KC     A+ VF+    +N V W AM++G + ++     I +F  M+R G++    T
Sbjct: 244 LYAKCGCIGDAILVFDCSGEKNVVMWNAMLNGLVRNEYQVEAIQMFLYMKRLGLEADEFT 303

Query: 234 LTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERT 293
              VL ACA L     G+ +         D    ++ A + M+ +   A+  A+ +F   
Sbjct: 304 YVSVLGACAHLDSHCLGRQVQCVTIKNCMDASLFVANATLDMHSKFG-AIDDAKTLFNLI 362

Query: 294 KVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGL 353
             KD V W++++ G + + +  EA+ +   M L+ + P+ V+   ++++C+       G 
Sbjct: 363 TYKDTVSWNALLVGLTHNEEDEEAIHMLKGMNLDGVTPDEVSFATVINACSNIRATETGK 422

Query: 354 GVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHG 413
            +HC  MK  +  + ++G++L++ YSK G + S  ++  ++ A   V    LI+G   + 
Sbjct: 423 QIHCLAMKHSICSNHAVGSSLIDFYSKHGDVESCRKVLAQVDASSIVPRNVLIAGLVQNN 482

Query: 414 YGEEALQLFLEMQESGVEPDAITVLAILSAC 444
             +EA+ LF ++   G++P + T  +ILS C
Sbjct: 483 REDEAIDLFQQVLRDGLKPSSFTFSSILSGC 513



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 116/482 (24%), Positives = 219/482 (45%), Gaps = 63/482 (13%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G Q HC A K G  +    + +L++MYA+  +   A ++F  +   DT+ W S+I+ + +
Sbjct: 50  GKQAHCDAEKRGLGSGAFCAAALVNMYARCGRVGDARRVFGGISLPDTVCWASMISGYHR 109

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
            G +  ++ +F  M   G          ++   + +G LE  R +               
Sbjct: 110 AGRFQEAVCLFTRMEKMGSSPDRVTCVAVVCALTALGRLEDARTL--------------- 154

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGI-DLFRAMQRE 225
                               +       + V+W A+ISG       +  +  L++ M+  
Sbjct: 155 --------------------LHRMPAPSSTVAWNAVISGYAQQSGIEHEVFGLYKDMRCW 194

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
           G+ PTR T   +L A A       G+ +H  A   G D +  + ++L+++Y +C   +  
Sbjct: 195 GLWPTRSTFASMLSAAANATAFIEGRQVHAAAVRHGLDANVFVGSSLINLYAKCG-CIGD 253

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           A ++F+ +  K+VV+W++++ G  ++    EA+++F  M+   +E +  T +++L +C  
Sbjct: 254 AILVFDCSGEKNVVMWNAMLNGLVRNEYQVEAIQMFLYMKRLGLEADEFTYVSVLGACAH 313

Query: 346 QSFLSHGLG--VHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWT 403
               SH LG  V C  +K  ++  + + NA ++M+SK G+I  +  +FN +  +D VSW 
Sbjct: 314 LD--SHCLGRQVQCVTIKNCMDASLFVANATLDMHSKFGAIDDAKTLFNLITYKDTVSWN 371

Query: 404 TLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKE 463
            L+ G   +   EEA+ +   M   GV PD ++   +++AC++   ++  ET        
Sbjct: 372 ALLVGLTHNEEDEEAIHMLKGMNLDGVTPDEVSFATVINACSN---IRATET-------G 421

Query: 464 KKI-ALAIEHYAC--------YVDLLGKSGKIEDACKV---VSTMPMKPSTRILSSLVSA 511
           K+I  LA++H  C         +D   K G +E   KV   V    + P   +++ LV  
Sbjct: 422 KQIHCLAMKHSICSNHAVGSSLIDFYSKHGDVESCRKVLAQVDASSIVPRNVLIAGLVQN 481

Query: 512 CR 513
            R
Sbjct: 482 NR 483



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 148/317 (46%), Gaps = 39/317 (12%)

Query: 132 LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM 191
           LA  +S CS++G L  G+Q H      G      F + AL+++Y++C     A RVF  +
Sbjct: 34  LAATLSACSRLGALVSGKQAHCDAEKRG-LGSGAFCAAALVNMYARCGRVGDARRVFGGI 92

Query: 192 VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGK 251
            + + V W +MISG   +  +   + LF  M++ G  P RVT   V+ A   L  L +  
Sbjct: 93  SLPDTVCWASMISGYHRAGRFQEAVCLFTRMEKMGSSPDRVTCVAVVCALTALGRLED-- 150

Query: 252 AIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV-KDVVIWSSIIRGYS- 309
                                             AR +  R       V W+++I GY+ 
Sbjct: 151 ----------------------------------ARTLLHRMPAPSSTVAWNAVISGYAQ 176

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
           QSG   E   L+  MR   + P   T  ++LS+    +    G  VH   ++ GL+ +V 
Sbjct: 177 QSGIEHEVFGLYKDMRCWGLWPTRSTFASMLSAAANATAFIEGRQVHAAAVRHGLDANVF 236

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
           +G++L+N+Y+KCG I  +  +F+    ++ V W  +++G   + Y  EA+Q+FL M+  G
Sbjct: 237 VGSSLINLYAKCGCIGDAILVFDCSGEKNVVMWNAMLNGLVRNEYQVEAIQMFLYMKRLG 296

Query: 430 VEPDAITVLAILSACNH 446
           +E D  T +++L AC H
Sbjct: 297 LEADEFTYVSVLGACAH 313



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 73/132 (55%)

Query: 329 IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSH 388
           + P+   L A LS+C+R   L  G   HC   K GL        AL+NMY++CG +  + 
Sbjct: 27  VRPDQFDLAATLSACSRLGALVSGKQAHCDAEKRGLGSGAFCAAALVNMYARCGRVGDAR 86

Query: 389 QIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG 448
           ++F  ++  D V W ++ISGY   G  +EA+ LF  M++ G  PD +T +A++ A    G
Sbjct: 87  RVFGGISLPDTVCWASMISGYHRAGRFQEAVCLFTRMEKMGSSPDRVTCVAVVCALTALG 146

Query: 449 LVKEAETLFNNV 460
            +++A TL + +
Sbjct: 147 RLEDARTLLHRM 158



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 96/224 (42%), Gaps = 38/224 (16%)

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
           GV+P +  L   L AC+ L  L +GK  H  A   G       +AAL++MY  C   +  
Sbjct: 26  GVRPDQFDLAATLSACSRLGALVSGKQAHCDAEKRGLGSGAFCAAALVNMYARCGR-VGD 84

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           AR +F    + D V W+S+I GY ++G   EA+ LF+RM      P+ VT +A++ + T 
Sbjct: 85  ARRVFGGISLPDTVCWASMISGYHRAGRFQEAVCLFTRMEKMGSSPDRVTCVAVVCALT- 143

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEM-AARDFVSWTT 404
                                               G +  +  + + M A    V+W  
Sbjct: 144 ----------------------------------ALGRLEDARTLLHRMPAPSSTVAWNA 169

Query: 405 LISGYGFH-GYGEEALQLFLEMQESGVEPDAITVLAILSACNHA 447
           +ISGY    G   E   L+ +M+  G+ P   T  ++LSA  +A
Sbjct: 170 VISGYAQQSGIEHEVFGLYKDMRCWGLWPTRSTFASMLSAAANA 213


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 185/557 (33%), Positives = 303/557 (54%), Gaps = 3/557 (0%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           SG+         V+ AC  ++  +  G Q+H   ++ G D D   +N+L+ MY K  + +
Sbjct: 196 SGIQPTEFGFSCVVNACTGSRNIEA-GRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVD 254

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
            A  +F++MP  D +SWN++I+    NG   R++E+  +M   G V     L+ I+  CS
Sbjct: 255 IASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACS 314

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
             G  +LGRQIH  +I   + +   ++   L+D+Y+K H    A +VF+ M  R+ +   
Sbjct: 315 GAGAFDLGRQIHGFMI-KANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCN 373

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
           A+ISGC     +D  + LF  +++EG+   R TL  VL + A L      + +H  A   
Sbjct: 374 ALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKI 433

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
           GF FD H+   L+  Y +C+  L  A  +FE     D++  +S+I   SQ      A+KL
Sbjct: 434 GFIFDAHVVNGLIDSYWKCS-CLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKL 492

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
           F  M  + +EP+   L ++L++C   S    G  VH +++K     D   GNAL+  Y+K
Sbjct: 493 FMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAK 552

Query: 381 CGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
           CGSI  +   F+ +  R  VSW+ +I G   HG+G+ AL+LF  M + G+ P+ IT+ ++
Sbjct: 553 CGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSV 612

Query: 441 LSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKP 500
           L ACNHAGLV EA+  FN++ +   I    EHY+C +DLLG++GK++DA ++V++MP + 
Sbjct: 613 LCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQA 672

Query: 501 STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWR 560
           +  I  +L+ A R+H   E+ ++ A +L   EPE +  + LL+   + +G W    +V +
Sbjct: 673 NASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRK 732

Query: 561 VMRAKGLSKSYGFSRIE 577
           +M+   + K    S IE
Sbjct: 733 LMKDSNIKKEPAMSWIE 749



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 126/398 (31%), Positives = 206/398 (51%), Gaps = 8/398 (2%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G  LH + LKSGS A     N LIS Y+K  +P  A ++FDE+P    +SW+S++  ++ 
Sbjct: 23  GAHLHASLLKSGSLAS--FRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSN 80

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           NG    +++ F  M   G V   E    ++  C  + +  LG Q+HA+ +  G F   VF
Sbjct: 81  NGLPRSAIQAFHGMRAEG-VCCNEFALPVVLKC--VPDARLGAQVHAMAMATG-FGSDVF 136

Query: 167 VSTALLDLYSKCHHWLIALRVF-EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
           V+ AL+ +Y        A RVF E    RN VSW  ++S  + +      I +F  M   
Sbjct: 137 VANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWS 196

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
           G++PT    + V+ AC   R++  G+ +H      G+D D   + AL+ MY +    +  
Sbjct: 197 GIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGR-VDI 255

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           A +IFE+    DVV W+++I G   +G    A++L  +M+   + PN  TL +IL +C+ 
Sbjct: 256 ASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSG 315

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
                 G  +H +++KA  + D  IG  L++MY+K   +  + ++F+ M  RD +    L
Sbjct: 316 AGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNAL 375

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
           ISG    G  +EAL LF E+++ G+  +  T+ A+L +
Sbjct: 376 ISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKS 413



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/386 (28%), Positives = 188/386 (48%), Gaps = 18/386 (4%)

Query: 148 GRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCI 207
           G  +HA ++  GS  L+ F    L+  YSKC     A RVF+++     VSW+++++   
Sbjct: 23  GAHLHASLLKSGS--LASF-RNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYS 79

Query: 208 DSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
           ++    + I  F  M+ EGV      L +VL  C  + D R G  +H  A   GF  D  
Sbjct: 80  NNGLPRSAIQAFHGMRAEGVCCNEFALPVVL-KC--VPDARLGAQVHAMAMATGFGSDVF 136

Query: 268 LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
           ++ AL+ MY          R+  E    ++ V W+ ++  Y ++    +A+++F  M   
Sbjct: 137 VANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWS 196

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
            I+P       ++++CT    +  G  VH  +++ G + DV   NAL++MY K G +  +
Sbjct: 197 GIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIA 256

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHA 447
             IF +M   D VSW  LISG   +G+   A++L L+M+ SG+ P+  T+ +IL AC+ A
Sbjct: 257 SVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGA 316

Query: 448 GLVKEAETLFNNVMK-----EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPST 502
           G       +   ++K     +  I + +      VD+  K+  ++DA KV   M      
Sbjct: 317 GAFDLGRQIHGFMIKANADSDDYIGVGL------VDMYAKNHFLDDARKVFDWM-FHRDL 369

Query: 503 RILSSLVSACRIHGRLEVAEMLAHQL 528
            + ++L+S C   GR + A  L ++L
Sbjct: 370 ILCNALISGCSHGGRHDEALSLFYEL 395


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 185/557 (33%), Positives = 303/557 (54%), Gaps = 3/557 (0%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           SG+         V+ AC  ++  +  G Q+H   ++ G D D   +N+L+ MY K  + +
Sbjct: 196 SGIQPTEFGFSCVVNACTGSRNIEA-GRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVD 254

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
            A  +F++MP  D +SWN++I+    NG   R++E+  +M   G V     L+ I+  CS
Sbjct: 255 IASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACS 314

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
             G  +LGRQIH  +I   + +   ++   L+D+Y+K H    A +VF+ M  R+ +   
Sbjct: 315 GAGAFDLGRQIHGFMI-KANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCN 373

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
           A+ISGC     +D  + LF  +++EG+   R TL  VL + A L      + +H  A   
Sbjct: 374 ALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKI 433

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
           GF FD H+   L+  Y +C+  L  A  +FE     D++  +S+I   SQ      A+KL
Sbjct: 434 GFIFDAHVVNGLIDSYWKCS-CLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKL 492

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
           F  M  + +EP+   L ++L++C   S    G  VH +++K     D   GNAL+  Y+K
Sbjct: 493 FMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAK 552

Query: 381 CGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
           CGSI  +   F+ +  R  VSW+ +I G   HG+G+ AL+LF  M + G+ P+ IT+ ++
Sbjct: 553 CGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSV 612

Query: 441 LSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKP 500
           L ACNHAGLV EA+  FN++ +   I    EHY+C +DLLG++GK++DA ++V++MP + 
Sbjct: 613 LCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQA 672

Query: 501 STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWR 560
           +  I  +L+ A R+H   E+ ++ A +L   EPE +  + LL+   + +G W    +V +
Sbjct: 673 NASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRK 732

Query: 561 VMRAKGLSKSYGFSRIE 577
           +M+   + K    S IE
Sbjct: 733 LMKDSNIKKEPAMSWIE 749



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 126/398 (31%), Positives = 205/398 (51%), Gaps = 8/398 (2%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G  LH + LKSGS A     N LIS Y+K  +P  A + FDE+P    +SW+S++  ++ 
Sbjct: 23  GAHLHASLLKSGSLAS--FRNHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSN 80

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           NG    +++ F  M   G V   E    ++  C  + +  LG Q+HA+ +  G F   VF
Sbjct: 81  NGLPRSAIQAFHGMRAEG-VCCNEFALPVVLKC--VPDARLGAQVHAMAMATG-FGSDVF 136

Query: 167 VSTALLDLYSKCHHWLIALRVF-EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
           V+ AL+ +Y        A RVF E    RN VSW  ++S  + +      I +F  M   
Sbjct: 137 VANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWS 196

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
           G++PT    + V+ AC   R++  G+ +H      G+D D   + AL+ MY +    +  
Sbjct: 197 GIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGR-VDI 255

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           A +IFE+    DVV W+++I G   +G    A++L  +M+   + PN  TL +IL +C+ 
Sbjct: 256 ASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSG 315

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
                 G  +H +++KA  + D  IG  L++MY+K   +  + ++F+ M  RD +    L
Sbjct: 316 AGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNAL 375

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
           ISG    G  +EAL LF E+++ G+  +  T+ A+L +
Sbjct: 376 ISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKS 413



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 109/386 (28%), Positives = 187/386 (48%), Gaps = 18/386 (4%)

Query: 148 GRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCI 207
           G  +HA ++  GS  L+ F    L+  YSKC     A R F+++     VSW+++++   
Sbjct: 23  GAHLHASLLKSGS--LASF-RNHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYS 79

Query: 208 DSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
           ++    + I  F  M+ EGV      L +VL  C  + D R G  +H  A   GF  D  
Sbjct: 80  NNGLPRSAIQAFHGMRAEGVCCNEFALPVVL-KC--VPDARLGAQVHAMAMATGFGSDVF 136

Query: 268 LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
           ++ AL+ MY          R+  E    ++ V W+ ++  Y ++    +A+++F  M   
Sbjct: 137 VANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWS 196

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
            I+P       ++++CT    +  G  VH  +++ G + DV   NAL++MY K G +  +
Sbjct: 197 GIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIA 256

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHA 447
             IF +M   D VSW  LISG   +G+   A++L L+M+ SG+ P+  T+ +IL AC+ A
Sbjct: 257 SVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGA 316

Query: 448 GLVKEAETLFNNVMK-----EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPST 502
           G       +   ++K     +  I + +      VD+  K+  ++DA KV   M      
Sbjct: 317 GAFDLGRQIHGFMIKANADSDDYIGVGL------VDMYAKNHFLDDARKVFDWM-FHRDL 369

Query: 503 RILSSLVSACRIHGRLEVAEMLAHQL 528
            + ++L+S C   GR + A  L ++L
Sbjct: 370 ILCNALISGCSHGGRHDEALSLFYEL 395


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 188/556 (33%), Positives = 308/556 (55%), Gaps = 6/556 (1%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           N    P V+KAC+ A      G  +H  A  +G   D  +S +LI +Y + ++   A  +
Sbjct: 99  NKYTFPFVLKACS-ALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNV 157

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL-CGFVLKAELLAGIISLCSQIGE 144
           F +MP RD ++WN+++  +  +G Y  ++    +M    G    A  L  ++ L +Q G 
Sbjct: 158 FAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGA 217

Query: 145 LELGRQIHA--LVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAM 202
           L  G  IHA  L       E  V + TALLD+Y+KC   + A RVF  M +RN+V+W+A+
Sbjct: 218 LFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSAL 277

Query: 203 ISGCIDSQNYDTGIDLFRAMQREGV-KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           I G +         +LF+ M  EG+   +  ++   L  CA L DL  G  +H      G
Sbjct: 278 IGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSG 337

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
              D   S +L+ MY +    ++ A + F+   VKD + + +++ G  Q+G   EA  +F
Sbjct: 338 IHADLTASNSLLSMYAKAG-LINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVF 396

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
            +M+   +EP+  T+++++ +C+  + L HG   H  ++  GL  + SI N+L++MY+KC
Sbjct: 397 KKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKC 456

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
           G I  S Q+F++M ARD VSW T+I+GYG HG G+EA  LFL M+  G  PD +T + ++
Sbjct: 457 GKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLI 516

Query: 442 SACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPS 501
           +AC+H+GLV E +  F+ +  +  I   +EHY C VDLL + G +++A + + +MP+K  
Sbjct: 517 AACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKAD 576

Query: 502 TRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRV 561
            R+  +L+ ACRIH  +++ + ++  + +  PE   N+ LLS + S +G +  A EV  +
Sbjct: 577 VRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRII 636

Query: 562 MRAKGLSKSYGFSRIE 577
            + KG  KS G+S IE
Sbjct: 637 QKVKGFKKSPGYSWIE 652



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/373 (27%), Positives = 171/373 (45%), Gaps = 49/373 (13%)

Query: 183 IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
           +A +VF+++   +  ++ A+I        +   IDL+R+M R  V P + T   VL AC+
Sbjct: 52  LARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKACS 111

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
            L DLR G+ IH +A   G   D  +S AL+ +Y  C     PAR +F +  ++DVV W+
Sbjct: 112 ALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCAR-FGPARNVFAKMPMRDVVAWN 170

Query: 303 SIIRGYSQSGDLSEAMK-LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           +++ GY+  G    A+  L        + PN+ TL+++L    +   L  G  +H Y ++
Sbjct: 171 AMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLR 230

Query: 362 AGLNFD---VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEA 418
           A L  +   V IG AL++MY+KC  +  + ++F+ M  R+ V+W+ LI G+       EA
Sbjct: 231 ACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEA 290

Query: 419 LQLFLEM------------------------------------QESGVEPDAITVLAILS 442
             LF +M                                     +SG+  D     ++LS
Sbjct: 291 FNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLS 350

Query: 443 ACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP---MK 499
               AGL+ EA   F+ +  +  I+       C      ++GK E+A  V   M    M+
Sbjct: 351 MYAKAGLINEATMFFDEIAVKDTISYGALLSGCV-----QNGKAEEAFLVFKKMQACNME 405

Query: 500 PSTRILSSLVSAC 512
           P    + SL+ AC
Sbjct: 406 PDIATMVSLIPAC 418


>gi|413952893|gb|AFW85542.1| hypothetical protein ZEAMMB73_270374 [Zea mays]
          Length = 716

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 196/576 (34%), Positives = 312/576 (54%), Gaps = 4/576 (0%)

Query: 4   KHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADP 63
           +H     LH   +   P     +  +L   +KAC  +  +  +G  LHC A+K G  AD 
Sbjct: 143 RHADAVALHHDMRRRRPCPEAQDDFVLSLALKACIRSAEYS-YGRSLHCDAIKVGG-ADG 200

Query: 64  VISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC 123
            + NSL+ MYAK    E A ++F+ +P R+ +SW S+I+   QNGF    L +F +M   
Sbjct: 201 FVMNSLVDMYAKAEDLECARKVFERIPDRNVVSWTSMISGCVQNGFASDGLLLFNKMRQD 260

Query: 124 GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
                   +A +I+ CS +  L  GR +H  VI  G    S F+S ALLD+Y KC     
Sbjct: 261 NVPPSEYTIATVITACSALFGLHQGRWMHGSVIKQGLMSNS-FISAALLDMYVKCGELDH 319

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
           A  VF+++   + V WT MI G   + N    + LF   +   + P  VT   VL A A+
Sbjct: 320 ARCVFDELSYIDLVLWTTMIVGYTQNGNPLDALRLFLDKRFANIAPNSVTTATVLSASAQ 379

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
           LRDL  GK+IHG A   G    + +  AL+ MY +C +A+  A  IF R   KDVV W+S
Sbjct: 380 LRDLSLGKSIHGLAVKLGLVEYNVVGNALVDMYAKC-QAVSEADRIFGRISNKDVVAWNS 438

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           +I GY+++    +A+ LF +M L+   P++++++  LS+      L  G  +H Y +K  
Sbjct: 439 MISGYAENNMGDDALMLFKQMSLQGSSPDAISVVNALSASVCLGDLLIGKSIHGYAVKHA 498

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
              ++ +  AL+N+Y+KCG + S+ ++F+EM  R+ V+W  +I GYG  G    ++ LF 
Sbjct: 499 FVSNIYVDTALLNLYNKCGDLLSARRVFDEMNDRNSVTWCAMIGGYGMQGDSAGSIHLFG 558

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS 483
           EM + GV P+ I   +ILS C+H+G+V   +  F+++ +   I  +++HYAC VD+L ++
Sbjct: 559 EMLKDGVYPNDIAFTSILSTCSHSGMVTAGKRYFDSMAQHFNITPSMKHYACMVDVLARA 618

Query: 484 GKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLS 543
           G +EDA + +  MPM+  T +  + +  C +H RL+ AE    +++   PE    Y L+S
Sbjct: 619 GNLEDALEFIDNMPMQADTSVWGAFLHGCELHSRLQFAEEAIKRMMVLHPERPDLYVLIS 678

Query: 544 MVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIENE 579
            + + +G W  +  + R M+ KGL K  G S + +E
Sbjct: 679 NLYTSNGMWDKSLAIRRWMQEKGLVKLPGCSSVGHE 714


>gi|225447243|ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Vitis vinifera]
          Length = 633

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 183/567 (32%), Positives = 327/567 (57%), Gaps = 11/567 (1%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           + + P  + +   +  S+++ C       H GLQ+H   +KSG + D  + NSL+++Y K
Sbjct: 48  KSIDPGEISAKPVLYASLLQTCTKVLAFNH-GLQIHAHVIKSGLEFDRFVGNSLLTLYFK 106

Query: 76  FSK--PESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLA 133
                PE+  ++FD +  +D ISW S+I+ + + G  + SLE+F +M   G    A  L+
Sbjct: 107 LGTDFPETR-KVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLS 165

Query: 134 GIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI 193
            +I  CS++G+L+LGR  H +V+  G F+ +  +++AL+D++ +      A ++F++++ 
Sbjct: 166 AVIKACSELGDLKLGRIFHGVVLGRG-FDSNYVIASALIDMHGRNCALDDARQLFDELLE 224

Query: 194 RNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE-GVKPTRVTLTIVLLACAELRDLRNGKA 252
            + + WT++IS    +  +D  +  F +MQR+ G+ P   T   VL AC  L  L+ GK 
Sbjct: 225 PDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKE 284

Query: 253 IHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSG 312
           +H      GF  +  + ++L+ MY +C       RI F+R  +K+ V WS+++ GY Q+G
Sbjct: 285 VHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRI-FDRMPIKNSVSWSALLGGYCQNG 343

Query: 313 DLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN 372
           D    +++F +M  E+++        IL +C   + +  G  VHC  ++ G   DV + +
Sbjct: 344 DFKSVIQIFRKM--EKVD--LYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVES 399

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
           AL+++Y+KCG I  +  IF++M  R+ ++W ++I G+  +G GEEAL++F +M + G++P
Sbjct: 400 ALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKP 459

Query: 433 DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKV 492
           D I+ + IL AC+H GLV E    F ++ K+  I + IEHY+C VDLLG++G +E+A  +
Sbjct: 460 DYISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAEIL 519

Query: 493 VSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNW 552
           + T   +  + + ++L+ AC      E+AE +A +++E EP+   +Y LL+ V    G W
Sbjct: 520 IETSDFRDDSSLWAALLGACTTCTNYEIAERIAKRVMELEPDYHLSYVLLANVYKAVGRW 579

Query: 553 LGAEEVWRVMRAKGLSKSYGFSRIENE 579
             A  + R+M+ +G++K  G S IE +
Sbjct: 580 NDALRIRRLMKDRGVNKMPGKSWIETK 606



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 133/471 (28%), Positives = 232/471 (49%), Gaps = 11/471 (2%)

Query: 83  YQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQI 142
           Y L   +   D  +  S I    ++G    +L++ + +       K  L A ++  C+++
Sbjct: 13  YSLLTPLNLSDNTNPFSKILQLCKSGELSGALQLLKSIDPGEISAKPVLYASLLQTCTKV 72

Query: 143 GELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR-VFEQMVIRNEVSWTA 201
                G QIHA VI  G  E   FV  +LL LY K        R VF+ + +++ +SWT+
Sbjct: 73  LAFNHGLQIHAHVIKSG-LEFDRFVGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTS 131

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           MISG +        ++LF  M   GV+P   TL+ V+ AC+EL DL+ G+  HG     G
Sbjct: 132 MISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRG 191

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
           FD ++ +++AL+ M+     AL  AR +F+     D + W+SII   +++    EA++ F
Sbjct: 192 FDSNYVIASALIDMHGRNC-ALDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFF 250

Query: 322 SRMRLER-IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
             M+ +  + P+  T   +L++C     L  G  VH  ++  G   +V + ++L++MY K
Sbjct: 251 YSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGK 310

Query: 381 CGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
           CGS+  S +IF+ M  ++ VSW+ L+ GY  +G  +  +Q+F +M++     D      I
Sbjct: 311 CGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKMEKV----DLYCFGTI 366

Query: 441 LSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKP 500
           L  C     V++ + +    +++      I   A  VDL  K G IE A  +   MP++ 
Sbjct: 367 LRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESA-LVDLYAKCGCIEYAQTIFDQMPVR- 424

Query: 501 STRILSSLVSACRIHGRLEVAEMLAHQLI-EAEPENAANYTLLSMVCSESG 550
           +    +S++     +GR E A  + +Q++ E    +  ++  +   CS  G
Sbjct: 425 NLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSHRG 475


>gi|297802056|ref|XP_002868912.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314748|gb|EFH45171.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1057

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 194/573 (33%), Positives = 323/573 (56%), Gaps = 12/573 (2%)

Query: 10  TLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSL 69
           +L L+ Q L    +  +  IL +V+ AC+     +  G Q+H   L+ G + D  + N L
Sbjct: 233 SLQLFYQ-LMEGNVVPDGYILSTVLSACSILPFLEG-GKQIHAHILRYGHEKDASLMNVL 290

Query: 70  ISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKA 129
           I  Y K  +  +A++LFD MP ++ ISW ++++ + QN  +  ++E+F  M    F LK 
Sbjct: 291 IDSYVKCGRVRAAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSM--PKFGLKP 348

Query: 130 ELLA--GIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
           ++ A   I++ C+ +  LE G Q+HA  I   +     +V+ +L+D+Y+KC     A +V
Sbjct: 349 DMFACSSILTSCASLHALEFGTQVHAYTI-KANLGNDSYVTNSLIDMYAKCDCLTEARKV 407

Query: 188 FEQMVIRNEVSWTAMISGC--IDSQ-NYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
           F+     + V + AMI G   + +Q      +++F  M+   ++P+ +T   +L A A L
Sbjct: 408 FDIFAADDVVLFNAMIEGYSRLGTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRASASL 467

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
             L   K IHG  +  G + D    +AL+ +Y  C   L  +R++F+  KVKD+VIW+S+
Sbjct: 468 TSLGLSKQIHGLMFKFGLNLDIFAGSALIAVYSNCY-CLKDSRLVFDEMKVKDLVIWNSM 526

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
             GY Q  +  EA+ LF  ++L R  P+  T + ++++    + L  G   HC ++K GL
Sbjct: 527 FSGYVQQSENEEALNLFLELQLSRDRPDEFTFVDMVTAAGNLASLQLGQEFHCQLLKRGL 586

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
             +  I NAL++MY+KCGS   +H+ F+  A+RD V W ++IS Y  HG G +ALQ+  +
Sbjct: 587 ECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGRKALQMLEK 646

Query: 425 MQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSG 484
           M   G+EP+ IT + +LSAC+HAGLV++    F  +M    I    EHY C V LLG++G
Sbjct: 647 MMCEGIEPNYITFVGVLSACSHAGLVEDGLKQF-ELMLRFGIEPETEHYVCMVSLLGRAG 705

Query: 485 KIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSM 544
           ++ +A +++  MP KP+  +  SL+S C   G +E+AE  A   I ++P+++ ++TLLS 
Sbjct: 706 RLNEARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEYAAEMAILSDPKDSGSFTLLSN 765

Query: 545 VCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           + +  G W  A++V   M+ +G+ K  G S IE
Sbjct: 766 IYASKGMWTDAKKVRERMKFEGVVKEPGRSWIE 798



 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 159/552 (28%), Positives = 273/552 (49%), Gaps = 13/552 (2%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACA-YAQTHQHFGLQLHCTALKSGSDADPV 64
           FYE++L ++           N  IL S I+AC+    + +    QL    +KS  D D  
Sbjct: 125 FYEESLVVFLDFWRTRKNSPNEYILSSFIQACSGLDGSGRWMVFQLQSFLVKSRFDRDVY 184

Query: 65  ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG 124
           +   LI  Y K    + A  +FD +P + T++W ++I+   + G    SL++F ++    
Sbjct: 185 VGTLLIDFYLKEGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEGN 244

Query: 125 FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
            V    +L+ ++S CS +  LE G+QIHA ++  G  E    +   L+D Y KC     A
Sbjct: 245 VVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGH-EKDASLMNVLIDSYVKCGRVRAA 303

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
            ++F+ M  +N +SWT ++SG   +  +   ++LF +M + G+KP     + +L +CA L
Sbjct: 304 HKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASL 363

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
             L  G  +H Y        D +++ +L+ MY +C + L  AR +F+     DVV+++++
Sbjct: 364 HALEFGTQVHAYTIKANLGNDSYVTNSLIDMYAKC-DCLTEARKVFDIFAADDVVLFNAM 422

Query: 305 IRGYSQSG---DLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           I GYS+ G   +L +A+ +F  MR   I P+ +T +++L +    + L     +H  + K
Sbjct: 423 IEGYSRLGTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFK 482

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
            GLN D+  G+AL+ +YS C  +  S  +F+EM  +D V W ++ SGY      EEAL L
Sbjct: 483 FGLNLDIFAGSALIAVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFSGYVQQSENEEALNL 542

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDL 479
           FLE+Q S   PD  T + +++A  +   ++  +     ++K     L    Y     +D+
Sbjct: 543 FLELQLSRDRPDEFTFVDMVTAAGNLASLQLGQEFHCQLLKR---GLECNPYITNALLDM 599

Query: 480 LGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA-EMLAHQLIEAEPENAAN 538
             K G  EDA K   +   +      +S++S+   HG    A +ML   + E    N   
Sbjct: 600 YAKCGSPEDAHKAFDSAASRDVV-CWNSVISSYANHGEGRKALQMLEKMMCEGIEPNYIT 658

Query: 539 YTLLSMVCSESG 550
           +  +   CS +G
Sbjct: 659 FVGVLSACSHAG 670



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 122/402 (30%), Positives = 209/402 (51%), Gaps = 12/402 (2%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           +H   + SG + D  +SN L+++Y++      A ++F++MP R+ ++W+++++    +GF
Sbjct: 66  VHGQIIVSGLELDTYLSNILMNLYSRAGGMVYARKVFEKMPERNLVTWSTMVSACNHHGF 125

Query: 110 YVRSLEMFREMYLCGFVLKAE-LLAGIISLCSQIGELELGR----QIHALVIVDGSFELS 164
           Y  SL +F + +        E +L+  I  CS  G    GR    Q+ +  +V   F+  
Sbjct: 126 YEESLVVFLDFWRTRKNSPNEYILSSFIQACS--GLDGSGRWMVFQLQSF-LVKSRFDRD 182

Query: 165 VFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR 224
           V+V T L+D Y K  +   A  VF+ +  ++ V+WT MISGC+        + LF  +  
Sbjct: 183 VYVGTLLIDFYLKEGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLME 242

Query: 225 EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
             V P    L+ VL AC+ L  L  GK IH +    G + D  L   L+  Y +C   + 
Sbjct: 243 GNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGR-VR 301

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
            A  +F+    K+++ W++++ GY Q+    EAM+LF+ M    ++P+     +IL+SC 
Sbjct: 302 AAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCA 361

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
               L  G  VH Y +KA L  D  + N+L++MY+KC  +T + ++F+  AA D V +  
Sbjct: 362 SLHALEFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLFNA 421

Query: 405 LISGYGFHGYGEE---ALQLFLEMQESGVEPDAITVLAILSA 443
           +I GY   G   E   AL +F +M+   + P  +T +++L A
Sbjct: 422 MIEGYSRLGTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRA 463



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 161/299 (53%), Gaps = 9/299 (3%)

Query: 151 IHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQ 210
           +H  +IV G  EL  ++S  L++LYS+    + A +VFE+M  RN V+W+ M+S C    
Sbjct: 66  VHGQIIVSG-LELDTYLSNILMNLYSRAGGMVYARKVFEKMPERNLVTWSTMVSACNHHG 124

Query: 211 NYDTGIDLFRAMQR-EGVKPTRVTLTIVLLACAELRDLRNGK----AIHGYAYCCGFDFD 265
            Y+  + +F    R     P    L+  + AC+ L    +G+     +  +     FD D
Sbjct: 125 FYEESLVVFLDFWRTRKNSPNEYILSSFIQACSGLDG--SGRWMVFQLQSFLVKSRFDRD 182

Query: 266 HHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR 325
            ++   L+  Y +    +  AR++F+    K  V W+++I G  + G    +++LF ++ 
Sbjct: 183 VYVGTLLIDFYLK-EGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLM 241

Query: 326 LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSIT 385
              + P+   L  +LS+C+   FL  G  +H +I++ G   D S+ N L++ Y KCG + 
Sbjct: 242 EGNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVR 301

Query: 386 SSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
           ++H++F+ M  ++ +SWTTL+SGY  +   +EA++LF  M + G++PD     +IL++C
Sbjct: 302 AAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSC 360


>gi|147771902|emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
          Length = 708

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 183/567 (32%), Positives = 327/567 (57%), Gaps = 11/567 (1%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           + + P  + +   +  S+++ C       H GLQ+H   +KSG + D  + NSL+++Y K
Sbjct: 107 KSIDPGEISAKPVLYASLLQTCTKVLAFNH-GLQIHAHVIKSGLEFDRFVGNSLLTLYFK 165

Query: 76  FSK--PESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLA 133
                PE+  ++FD +  +D ISW S+I+ + + G  + SLE+F +M   G    A  L+
Sbjct: 166 LGTDFPETR-KVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLS 224

Query: 134 GIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI 193
            +I  CS++G+L+LGR  H +V+  G F+ +  +++AL+D++ +      A ++F++++ 
Sbjct: 225 AVIKACSELGDLKLGRIFHGVVLGRG-FDSNYVIASALIDMHGRNCALDDARQLFDELLE 283

Query: 194 RNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE-GVKPTRVTLTIVLLACAELRDLRNGKA 252
            + + WT++IS    +  +D  +  F +MQR+ G+ P   T   VL AC  L  L+ GK 
Sbjct: 284 PDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKE 343

Query: 253 IHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSG 312
           +H      GF  +  + ++L+ MY +C       RI F+R  +K+ V WS+++ GY Q+G
Sbjct: 344 VHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRI-FDRMPIKNSVSWSALLGGYCQNG 402

Query: 313 DLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN 372
           D    +++F +M  E+++        IL +C   + +  G  VHC  ++ G   DV + +
Sbjct: 403 DFKSVIQIFRKM--EKVD--LYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVES 458

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
           AL+++Y+KCG I  +  IF++M  R+ ++W ++I G+  +G GEEAL++F +M + G++P
Sbjct: 459 ALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKP 518

Query: 433 DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKV 492
           D I+ + IL AC+H GLV E    F ++ K+  I + IEHY+C VDLLG++G +E+A  +
Sbjct: 519 DYISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAEIL 578

Query: 493 VSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNW 552
           + T   +  + + ++L+ AC      E+AE +A +++E EP+   +Y LL+ V    G W
Sbjct: 579 IETSDFRDDSSLWAALLGACTTCTNYEIAERIAKRVMELEPDYHLSYVLLANVYKAVGRW 638

Query: 553 LGAEEVWRVMRAKGLSKSYGFSRIENE 579
             A  + R+M+ +G++K  G S IE +
Sbjct: 639 NDALRIRRLMKDRGVNKMPGKSWIETK 665



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 118/203 (58%), Gaps = 3/203 (1%)

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
           +SG+LS A++L   +    I    V   ++L +CT+    +HGL +H +++K+GL FD  
Sbjct: 95  KSGELSGALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRF 154

Query: 370 IGNALMNMYSKCGS-ITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
           +GN+L+ +Y K G+    + ++F+ +  +D +SWT++ISGY   G    +L+LF +M   
Sbjct: 155 VGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAY 214

Query: 429 GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIED 488
           GVEP+A T+ A++ AC+  G +K    +F+ V+  +         +  +D+ G++  ++D
Sbjct: 215 GVEPNAFTLSAVIKACSELGDLKLGR-IFHGVVLGRGFDSNYVIASALIDMHGRNCALDD 273

Query: 489 ACKVVSTMPMKPSTRILSSLVSA 511
           A ++   + ++P     +S++SA
Sbjct: 274 ARQLFDEL-LEPDAICWTSIISA 295


>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial [Vitis vinifera]
 gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
          Length = 1048

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 193/562 (34%), Positives = 304/562 (54%), Gaps = 5/562 (0%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           E+   G + +     S++ ACA  +  +  G QLH   +K   + +  + N+L+ MYAK 
Sbjct: 440 EMRGCGFWPDEFTYTSILSACACLECLE-MGRQLHSFIIKHNFEYNLFVENTLVDMYAKC 498

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
              E A Q F+ +  RD +SWN+II  + Q      +  MFR M L G       LA I+
Sbjct: 499 GALEEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASIL 558

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
           S C+ +  LE G Q+H  ++  G  +  ++  ++L+D+Y KC     A  VF  M  R+ 
Sbjct: 559 SGCANLQALEQGEQVHCFLVKSG-LQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSV 617

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           VS  A+I+G     +    IDLF+ MQ EG+ P+ +T   +L AC     L  G+ IH  
Sbjct: 618 VSMNAIIAG-YAQNDLVEAIDLFQEMQNEGLNPSEITFASLLDACTGPYKLNLGRQIHCL 676

Query: 257 AYCCGFDFD-HHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
               G  +D   L  +L+ MY           +  E    K  ++W++II G++Q+G   
Sbjct: 677 IQKRGLLYDGDFLGVSLLVMYMNSQRKTDADILFSEFQYPKSTILWTAIISGHTQNGCSE 736

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           EA++L+  M      P+  T  ++L +C+  + L  G  +H  I   GL+ D   G+A++
Sbjct: 737 EALQLYQEMHRNNARPDQATFASVLRACSILASLGDGRMIHSLIFHVGLDSDELTGSAVV 796

Query: 376 NMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           +MY+KCG + SS Q+F EM ++ D +SW ++I G+  +GY E AL++F EM+ + + PD 
Sbjct: 797 DMYAKCGDMKSSVQVFEEMGSKNDVISWNSMIVGFAKNGYAENALKIFDEMKHTRIRPDD 856

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS 494
           +T L +L+AC+HAG V E   +F+ ++   KI   ++H AC +DLLG+ G +++A + + 
Sbjct: 857 VTFLGVLTACSHAGRVSEGREIFDIMVHSYKIVPRLDHCACMIDLLGRWGFLKEAEEFID 916

Query: 495 TMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLG 554
            +  +P+  I ++L+ ACRIHG        A +LIE EPEN++ Y LLS + + SGNW  
Sbjct: 917 KLNFEPNAMIWATLLGACRIHGDDIRGRRAAEKLIELEPENSSPYVLLSNIYAASGNWDE 976

Query: 555 AEEVWRVMRAKGLSKSYGFSRI 576
              V R MR KGL K  G S I
Sbjct: 977 VNSVRRAMREKGLRKLPGCSWI 998



 Score =  260 bits (664), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 166/557 (29%), Positives = 297/557 (53%), Gaps = 18/557 (3%)

Query: 14  YKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMY 73
           + + +  +G+ S  + L SV+ A A  +   ++GL +H  A+K G +++  + +SLI+MY
Sbjct: 336 FFKNMWKTGVKSTRSTLGSVLSAIASLEA-LNYGLLVHAQAIKQGLNSNVYVGSSLINMY 394

Query: 74  AKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLA 133
           AK  K E+A ++FD +  R+ + WN+++  + QNG+  + +++F EM  CGF        
Sbjct: 395 AKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYT 454

Query: 134 GIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI 193
            I+S C+ +  LE+GRQ+H+  I+  +FE ++FV   L+D+Y+KC     A + FE +  
Sbjct: 455 SILSACACLECLEMGRQLHSF-IIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRN 513

Query: 194 RNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAI 253
           R+ VSW A+I G +  ++ D   ++FR M  +G+ P  V+L  +L  CA L+ L  G+ +
Sbjct: 514 RDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQV 573

Query: 254 HGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGD 313
           H +    G     +  ++L+ MY +C  A+  AR +F     + VV  ++II GY+Q+ D
Sbjct: 574 HCFLVKSGLQTCLYAGSSLIDMYVKCG-AIEAARYVFSCMPSRSVVSMNAIIAGYAQN-D 631

Query: 314 LSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS-IGN 372
           L EA+ LF  M+ E + P+ +T  ++L +CT    L+ G  +HC I K GL +D   +G 
Sbjct: 632 LVEAIDLFQEMQNEGLNPSEITFASLLDACTGPYKLNLGRQIHCLIQKRGLLYDGDFLGV 691

Query: 373 ALMNMYSKCGSITSSHQIFNEMA-ARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
           +L+ MY      T +  +F+E    +  + WT +ISG+  +G  EEALQL+ EM  +   
Sbjct: 692 SLLVMYMNSQRKTDADILFSEFQYPKSTILWTAIISGHTQNGCSEEALQLYQEMHRNNAR 751

Query: 432 PDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDA 489
           PD  T  ++L AC+    + +   + + +     + L  +    +  VD+  K G ++ +
Sbjct: 752 PDQATFASVLRACSILASLGDGRMIHSLIF---HVGLDSDELTGSAVVDMYAKCGDMKSS 808

Query: 490 CKVVSTMPMKPSTRILSSLVSACRIHG----RLEVAEMLAHQLIEAEPENAANYTLLSMV 545
            +V   M  K      +S++     +G     L++ + + H  I   P++     +L+  
Sbjct: 809 VQVFEEMGSKNDVISWNSMIVGFAKNGYAENALKIFDEMKHTRI--RPDDVTFLGVLT-A 865

Query: 546 CSESGNWLGAEEVWRVM 562
           CS +G      E++ +M
Sbjct: 866 CSHAGRVSEGREIFDIM 882



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 128/389 (32%), Positives = 207/389 (53%), Gaps = 3/389 (0%)

Query: 56  KSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLE 115
           K G   D V   ++I+      + + A  LF +MP  + ++WN +I+   + G  + +++
Sbjct: 276 KLGLVPDQVAFVTVITACVGLGRLDDACDLFVQMPNTNVVAWNVMISGHVKRGCDIEAID 335

Query: 116 MFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLY 175
            F+ M+  G       L  ++S  + +  L  G  +HA  I  G    +V+V ++L+++Y
Sbjct: 336 FFKNMWKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQG-LNSNVYVGSSLINMY 394

Query: 176 SKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLT 235
           +KC     A +VF+ +  RN V W AM+ G   +      + LF  M+  G  P   T T
Sbjct: 395 AKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYT 454

Query: 236 IVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV 295
            +L ACA L  L  G+ +H +     F+++  +   L+ MY +C  AL  AR  FE  + 
Sbjct: 455 SILSACACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCG-ALEEARQQFEFIRN 513

Query: 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV 355
           +D V W++II GY Q  D  EA  +F RM L+ I P+ V+L +ILS C     L  G  V
Sbjct: 514 RDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQV 573

Query: 356 HCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYG 415
           HC+++K+GL   +  G++L++MY KCG+I ++  +F+ M +R  VS   +I+GY  +   
Sbjct: 574 HCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAIIAGYAQNDL- 632

Query: 416 EEALQLFLEMQESGVEPDAITVLAILSAC 444
            EA+ LF EMQ  G+ P  IT  ++L AC
Sbjct: 633 VEAIDLFQEMQNEGLNPSEITFASLLDAC 661



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 149/535 (27%), Positives = 258/535 (48%), Gaps = 42/535 (7%)

Query: 18  LHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFS 77
           L   G+  N      V+ +CA        G Q+HC  +K G + +     SLI MY+K  
Sbjct: 173 LQNCGVSPNQFTYAIVLSSCARL-VDIDLGKQVHCGVIKMGFEFNSFCEGSLIDMYSKCG 231

Query: 78  KPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS 137
               A ++FD +   DT+SW ++I  + Q G    +L++F +M   G V        +I+
Sbjct: 232 SLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVIT 291

Query: 138 LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197
            C  +G L+                                     A  +F QM   N V
Sbjct: 292 ACVGLGRLD------------------------------------DACDLFVQMPNTNVV 315

Query: 198 SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
           +W  MISG +        ID F+ M + GVK TR TL  VL A A L  L  G  +H  A
Sbjct: 316 AWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQA 375

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
              G + + ++ ++L++MY +C E +  A+ +F+    +++V+W++++ GY+Q+G  S+ 
Sbjct: 376 IKQGLNSNVYVGSSLINMYAKC-EKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKV 434

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
           MKLFS MR     P+  T  +ILS+C     L  G  +H +I+K    +++ + N L++M
Sbjct: 435 MKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDM 494

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           Y+KCG++  + Q F  +  RD VSW  +I GY      +EA  +F  M   G+ PD +++
Sbjct: 495 YAKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSL 554

Query: 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
            +ILS C +   +++ E +   ++K   +   +   +  +D+  K G IE A  V S MP
Sbjct: 555 ASILSGCANLQALEQGEQVHCFLVK-SGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMP 613

Query: 498 MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNW 552
            + S   ++++++    +  +E  ++   Q ++ E  N +  T  S++ + +G +
Sbjct: 614 SR-SVVSMNAIIAGYAQNDLVEAIDLF--QEMQNEGLNPSEITFASLLDACTGPY 665



 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 124/441 (28%), Positives = 227/441 (51%), Gaps = 40/441 (9%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           +H   LK G  +   + ++++ +YAK    E A + F+++  RD ++WNS+++ +++ G 
Sbjct: 103 IHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQGS 162

Query: 110 YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVST 169
             + +  F  +  CG        A ++S C+++ +++LG+Q+H  VI  G FE + F   
Sbjct: 163 LEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMG-FEFNSFCEG 221

Query: 170 ALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKP 229
           +L+D+YSKC   + A ++F+ +V  + VSWTAMI+G +     +  + +F  MQ+ G+ P
Sbjct: 222 SLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVP 281

Query: 230 TRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARII 289
            +V    V+ AC  L  L +                           C+          +
Sbjct: 282 DQVAFVTVITACVGLGRLDDA--------------------------CD----------L 305

Query: 290 FERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFL 349
           F +    +VV W+ +I G+ + G   EA+  F  M    ++    TL ++LS+      L
Sbjct: 306 FVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEAL 365

Query: 350 SHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGY 409
           ++GL VH   +K GLN +V +G++L+NMY+KC  + ++ ++F+ +  R+ V W  ++ GY
Sbjct: 366 NYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGY 425

Query: 410 GFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK-KIAL 468
             +GY  + ++LF EM+  G  PD  T  +ILSAC     ++    L + ++K   +  L
Sbjct: 426 AQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIKHNFEYNL 485

Query: 469 AIEHYACYVDLLGKSGKIEDA 489
            +E+    VD+  K G +E+A
Sbjct: 486 FVEN--TLVDMYAKCGALEEA 504



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 70/210 (33%), Positives = 117/210 (55%), Gaps = 1/210 (0%)

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
           R  K IH      GF     L +A++ +Y +C      A+  F + + +D++ W+S++  
Sbjct: 98  RTSKTIHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKA-FNQLEKRDILAWNSVLSM 156

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
           YS+ G L + +  F  ++   + PN  T   +LSSC R   +  G  VHC ++K G  F+
Sbjct: 157 YSRQGSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFN 216

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
                +L++MYSKCGS+  + +IF+ +   D VSWT +I+GY   G  EEAL++F +MQ+
Sbjct: 217 SFCEGSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQK 276

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLF 457
            G+ PD +  + +++AC   G + +A  LF
Sbjct: 277 LGLVPDQVAFVTVITACVGLGRLDDACDLF 306



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 142/295 (48%), Gaps = 37/295 (12%)

Query: 149 RQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCID 208
           + IHA  +  G F     + +A++DLY+KC +   A + F Q+  R+ ++W +++S    
Sbjct: 101 KTIHAQTLKFG-FGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSR 159

Query: 209 SQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHL 268
             + +  I  F ++Q  GV P + T  IVL +CA L D+  GK +H      GF+F+   
Sbjct: 160 QGSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFC 219

Query: 269 SAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER 328
             +L+ MY +C  +L  AR IF+     D V W+++I GY Q G   EA+K+F  M+   
Sbjct: 220 EGSLIDMYSKCG-SLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLG 278

Query: 329 IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSH 388
           + P+ V  + ++++C        GL                            G +  + 
Sbjct: 279 LVPDQVAFVTVITACV-------GL----------------------------GRLDDAC 303

Query: 389 QIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
            +F +M   + V+W  +ISG+   G   EA+  F  M ++GV+    T+ ++LSA
Sbjct: 304 DLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSA 358



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 81/150 (54%), Gaps = 3/150 (2%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E+ L LY QE+H +    + A   SV++AC+   +    G  +H      G D+D +  +
Sbjct: 736 EEALQLY-QEMHRNNARPDQATFASVLRACSILASLGD-GRMIHSLIFHVGLDSDELTGS 793

Query: 68  SLISMYAKFSKPESAYQLFDEMPYR-DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           +++ MYAK    +S+ Q+F+EM  + D ISWNS+I  F +NG+   +L++F EM      
Sbjct: 794 AVVDMYAKCGDMKSSVQVFEEMGSKNDVISWNSMIVGFAKNGYAENALKIFDEMKHTRIR 853

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVI 156
                  G+++ CS  G +  GR+I  +++
Sbjct: 854 PDDVTFLGVLTACSHAGRVSEGREIFDIMV 883


>gi|356521639|ref|XP_003529461.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial-like [Glycine max]
          Length = 699

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 197/572 (34%), Positives = 318/572 (55%), Gaps = 15/572 (2%)

Query: 13  LYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISM 72
           L +  LHP+    +  +   V K+CA ++  Q   +  HC  +KS   +D  +   L+  
Sbjct: 121 LMRLSLHPTP--HDYVLFSIVFKSCAESRDFQTLTIT-HCHFVKS-LPSDSFVLTCLVDA 176

Query: 73  YAKFSKPESAYQLFDEM-PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAEL 131
           YAKF++ + A + FDE+    D +SW S+I  + QN      L +F  M    FV   E 
Sbjct: 177 YAKFARVDEATRAFDEIHENDDVVSWTSMIVAYVQNDCAREGLTLFNRMRE-AFVDGNEF 235

Query: 132 LAG-IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQ 190
             G ++S C+++  L  G+ +H  VI +G   ++ +++T+LL++Y KC +   A +VF++
Sbjct: 236 TVGSLVSACTKLNWLHQGKWVHGFVIKNG-ICVNSYLTTSLLNMYVKCGNIQDACKVFDE 294

Query: 191 M----VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
                  R+ VSWTAMI G          ++LF+  +  G+ P  VT++ +L +CA+L +
Sbjct: 295 SSSSSYDRDLVSWTAMIVGYSQRGYPHLALELFKDKKWSGILPNSVTVSSLLSSCAQLGN 354

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
              GK +HG A  CG D DH +  AL+ MY +C   +  AR +FE    KDVV W+SII 
Sbjct: 355 SVMGKLLHGLAVKCGLD-DHPVRNALVDMYAKCG-VVSDARCVFEAMLEKDVVSWNSIIS 412

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           G+ QSG+  EA+ LF RM LE   P++VT++ ILS+C     L  G  VH   +K GL  
Sbjct: 413 GFVQSGEAYEALNLFRRMGLELFSPDAVTVVGILSACASLGMLHLGCSVHGLALKDGLVV 472

Query: 367 D-VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
             + +G AL+N Y+KCG   ++  +F+ M  ++ V+W  +I GYG  G G  +L LF +M
Sbjct: 473 SSIYVGTALLNFYAKCGDARAARMVFDSMGEKNAVTWGAMIGGYGMQGDGNGSLTLFRDM 532

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
            E  VEP+ +    IL+AC+H+G+V E   LFN +  E     +++HYAC VD+L ++G 
Sbjct: 533 LEELVEPNEVVFTTILAACSHSGMVGEGSRLFNLMCGELNFVPSMKHYACMVDMLARAGN 592

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV 545
           +E+A   +  MP++PS  +  + +  C +H R E+      +++E  P+ A  Y L+S +
Sbjct: 593 LEEALDFIERMPVQPSVSVFGAFLHGCGLHSRFELGGAAIKKMLELHPDEACYYVLVSNL 652

Query: 546 CSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +  G W   ++V  +++ +GL+K  G S +E
Sbjct: 653 YASDGRWGMVKQVREMIKQRGLNKVPGCSSVE 684



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 147/513 (28%), Positives = 247/513 (48%), Gaps = 21/513 (4%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           LH + L  G   D ++S  L+S+YA F +   A ++F+ +P RD   +  +I  +  N  
Sbjct: 52  LHASFLIHGLTNDLLLSTKLLSLYASFGQLRHARKIFNHLPTRDLYCFKVMIRAYFLNDT 111

Query: 110 YVRSLEMFREMYLCGFVLKAE--LLAGIISLCSQIGELELGRQIHALVIVDGSFELSV-- 165
               + ++R M L       +  L + +   C++       R    L I    F  S+  
Sbjct: 112 PSGVVSLYRLMRLSLHPTPHDYVLFSIVFKSCAE------SRDFQTLTITHCHFVKSLPS 165

Query: 166 --FVSTALLDLYSKCHHWLIALRVFEQMVIRNE-VSWTAMISGCIDSQNYDTGIDLFRAM 222
             FV T L+D Y+K      A R F+++   ++ VSWT+MI   + +     G+ LF  M
Sbjct: 166 DSFVLTCLVDAYAKFARVDEATRAFDEIHENDDVVSWTSMIVAYVQNDCAREGLTLFNRM 225

Query: 223 QREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEA 282
           +   V     T+  ++ AC +L  L  GK +HG+    G   + +L+ +L++MY +C   
Sbjct: 226 REAFVDGNEFTVGSLVSACTKLNWLHQGKWVHGFVIKNGICVNSYLTTSLLNMYVKCGNI 285

Query: 283 LHPARIIFERTKV---KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAI 339
               ++  E +     +D+V W+++I GYSQ G    A++LF   +   I PNSVT+ ++
Sbjct: 286 QDACKVFDESSSSSYDRDLVSWTAMIVGYSQRGYPHLALELFKDKKWSGILPNSVTVSSL 345

Query: 340 LSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDF 399
           LSSC +      G  +H   +K GL+ D  + NAL++MY+KCG ++ +  +F  M  +D 
Sbjct: 346 LSSCAQLGNSVMGKLLHGLAVKCGLD-DHPVRNALVDMYAKCGVVSDARCVFEAMLEKDV 404

Query: 400 VSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNN 459
           VSW ++ISG+   G   EAL LF  M      PDA+TV+ ILSAC   G++    ++   
Sbjct: 405 VSWNSIISGFVQSGEAYEALNLFRRMGLELFSPDAVTVVGILSACASLGMLHLGCSVHGL 464

Query: 460 VMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLE 519
            +K+  +  +I      ++   K G    A  V  +M  K +     +++    + G   
Sbjct: 465 ALKDGLVVSSIYVGTALLNFYAKCGDARAARMVFDSMGEKNAV-TWGAMIGGYGMQGDGN 523

Query: 520 VAEMLAHQLIE--AEPENAANYTLLSMVCSESG 550
            +  L   ++E   EP N   +T +   CS SG
Sbjct: 524 GSLTLFRDMLEELVEP-NEVVFTTILAACSHSG 555


>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 186/561 (33%), Positives = 312/561 (55%), Gaps = 3/561 (0%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           E+  S +  N+     V+  CA ++     G QLH  A+  G + D  ++N+L++MY+K 
Sbjct: 149 EMRHSEIKPNSVTFACVLSVCA-SEAMLDLGTQLHGIAVGCGLELDSPVANTLLAMYSKC 207

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
              ++A +LFD +P  D +SWN II+ + QNG    +  +FR M   G    +   A  +
Sbjct: 208 QCLQAARKLFDTLPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFL 267

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
              +++  L+  ++IH  +I   +  L VF+ +AL+D+Y KC    +A +   Q    + 
Sbjct: 268 PCVNELLSLKHCKEIHGYIIRH-AVVLDVFLKSALIDIYFKCRDVEMAQKNLCQSSSFDT 326

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           V  T MISG + +      ++ FR + +E +KPT VT + +  A A L  L  GK +HG 
Sbjct: 327 VVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGS 386

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
                 D   H+ +A++ MY +C   L  A  +F R   KD + W+S+I   SQ+G   E
Sbjct: 387 IIKTKLDEKCHVGSAILDMYAKCGR-LDLACRVFNRITEKDAICWNSMITSCSQNGRPGE 445

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
           A+ LF +M +E    + V++   LS+C     L +G  +H  ++K  L  D+   ++L++
Sbjct: 446 AINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLID 505

Query: 377 MYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAIT 436
           MY+KCG++  S ++F+ M  ++ VSW ++IS YG HG  +E L LF EM  +G++PD +T
Sbjct: 506 MYAKCGNLNFSRRVFDRMQEKNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVT 565

Query: 437 VLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
            L I+SAC HAG V E    ++ + +E  I   +EHYAC  D+ G++G++ +A + +++M
Sbjct: 566 FLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLHEAFETINSM 625

Query: 497 PMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAE 556
           P  P   +  +L+ AC IHG +E+AE+ +  L + +P N+  Y LL+ V + +G W    
Sbjct: 626 PFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPLNSGYYVLLANVQAGAGKWRKVL 685

Query: 557 EVWRVMRAKGLSKSYGFSRIE 577
           +V  +M+ +G+ K  G+S IE
Sbjct: 686 KVRSIMKERGVRKVPGYSWIE 706



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 145/540 (26%), Positives = 271/540 (50%), Gaps = 8/540 (1%)

Query: 13  LYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISM 72
           L+  ++  +G+  +    P V+KAC   ++ +  G  +H T    G   D  + +SLI +
Sbjct: 44  LFYLKMLGAGVSPDKYTFPYVVKACCGLKSVK-MGKIVHETVNLMGLKEDVFVGSSLIKL 102

Query: 73  YAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELL 132
           YA+      A  LFD +P +D++ WN ++N + +NG    ++++F EM        +   
Sbjct: 103 YAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTF 162

Query: 133 AGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV 192
           A ++S+C+    L+LG Q+H + +  G  EL   V+  LL +YSKC     A ++F+ + 
Sbjct: 163 ACVLSVCASEAMLDLGTQLHGIAVGCG-LELDSPVANTLLAMYSKCQCLQAARKLFDTLP 221

Query: 193 IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKA 252
             + VSW  +ISG + +        LFR M   G+KP  +T    L    EL  L++ K 
Sbjct: 222 QSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKE 281

Query: 253 IHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSG 312
           IHGY        D  L +AL+ +Y +C +     + + + +   D V+ +++I GY  +G
Sbjct: 282 IHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKNLCQSSSF-DTVVCTTMISGYVLNG 340

Query: 313 DLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN 372
              EA++ F  +  ER++P SVT  +I  +    + L+ G  +H  I+K  L+    +G+
Sbjct: 341 KNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGS 400

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
           A+++MY+KCG +  + ++FN +  +D + W ++I+    +G   EA+ LF +M   G   
Sbjct: 401 AILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRY 460

Query: 433 DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKV 492
           D +++   LSAC +   +   + + + +M +  +   +   +  +D+  K G +  + +V
Sbjct: 461 DCVSISGALSACANLPALHYGKEI-HGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRV 519

Query: 493 VSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLSMVCSESG 550
              M  K      +S++SA   HG L+    L H+++    +P++     ++S  C  +G
Sbjct: 520 FDRMQEKNEVS-WNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIIS-ACGHAG 577



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 126/457 (27%), Positives = 228/457 (49%), Gaps = 4/457 (0%)

Query: 72  MYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAEL 131
           MY +    + A  LF  +    T +WN +I  FT  G +  +L  + +M   G       
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 132 LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM 191
              ++  C  +  +++G+ +H  V + G  E  VFV ++L+ LY++  H   A  +F+ +
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMGLKE-DVFVGSSLIKLYAENGHLSDAQYLFDNI 119

Query: 192 VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGK 251
             ++ V W  M++G + + +    I +F  M+   +KP  VT   VL  CA    L  G 
Sbjct: 120 PQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGT 179

Query: 252 AIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQS 311
            +HG A  CG + D  ++  L+ MY +C + L  AR +F+     D+V W+ II GY Q+
Sbjct: 180 QLHGIAVGCGLELDSPVANTLLAMYSKC-QCLQAARKLFDTLPQSDLVSWNGIISGYVQN 238

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
           G + EA  LF  M    I+P+S+T  + L        L H   +H YI++  +  DV + 
Sbjct: 239 GLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLK 298

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
           +AL+++Y KC  +  + +   + ++ D V  TT+ISGY  +G  +EAL+ F  + +  ++
Sbjct: 299 SALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMK 358

Query: 432 PDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACK 491
           P ++T  +I  A      +   + L  +++K  K+       +  +D+  K G+++ AC+
Sbjct: 359 PTSVTFSSIFPAFAGLAALNLGKELHGSIIK-TKLDEKCHVGSAILDMYAKCGRLDLACR 417

Query: 492 VVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
           V + +  K +    +S++++C  +GR   A  L  Q+
Sbjct: 418 VFNRITEKDAI-CWNSMITSCSQNGRPGEAINLFRQM 453


>gi|356503704|ref|XP_003520645.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Glycine max]
          Length = 855

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 195/566 (34%), Positives = 303/566 (53%), Gaps = 6/566 (1%)

Query: 13  LYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISM 72
           +Y Q L  SG + +     S+IKAC  A      G QLH   +KSG D   +  N+LISM
Sbjct: 245 MYIQMLQ-SGYFPDPLTFGSIIKACCIAGDID-LGRQLHGHVIKSGYDHHLIAQNALISM 302

Query: 73  YAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELL 132
           Y +F +   A  +F  +  +D ISW S+I  FTQ G+ + +L +FR+M+  GF    E +
Sbjct: 303 YTRFGQIVHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGFYQPNEFI 362

Query: 133 AG-IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM 191
            G + S C  + E E GRQIH +    G    +VF   +L D+Y+K      A+R F Q+
Sbjct: 363 FGSVFSACRSLLEPEFGRQIHGMCAKFG-LGRNVFAGCSLCDMYAKFGFLPSAIRAFYQI 421

Query: 192 VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGK 251
              + VSW A+I+   DS + +  I  F  M   G+ P  +T   +L AC     +  G 
Sbjct: 422 ESPDLVSWNAIIAAFSDSGDVNEAIYFFCQMMHTGLMPDGITFLSLLCACGSPVTINQGT 481

Query: 252 AIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFER-TKVKDVVIWSSIIRGYSQ 310
            IH Y    G D +  +  +L+ MY +C+  LH A  +F+  ++  ++V W++I+    Q
Sbjct: 482 QIHSYIIKIGLDKEAAVCNSLLTMYTKCSN-LHDAFNVFKDVSENANLVSWNAILSACLQ 540

Query: 311 SGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSI 370
                E  +LF  M     +P+++T+  IL +C   + L  G  VHC+ +K+GL  DVS+
Sbjct: 541 HKQAGEVFRLFKLMLFSENKPDNITITTILGTCAELASLEVGNQVHCFSVKSGLVVDVSV 600

Query: 371 GNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV 430
            N L++MY+KCGS+  +  +F      D VSW++LI GY   G G EAL LF  M+  GV
Sbjct: 601 SNRLIDMYAKCGSLKHARDVFGSTQNPDIVSWSSLIVGYAQFGLGHEALNLFRMMKNLGV 660

Query: 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDAC 490
           +P+ +T L +LSAC+H GLV+E    +N +  E  I    EH +C VDLL ++G + +A 
Sbjct: 661 QPNEVTYLGVLSACSHIGLVEEGWHFYNTMEIELGIPPTREHVSCMVDLLARAGCLYEAE 720

Query: 491 KVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESG 550
             +  M   P   +  +L+++C+ HG +++AE  A  +++ +P N+A   LLS + +  G
Sbjct: 721 NFIKKMGFNPDITMWKTLLASCKTHGNVDIAERAAENILKLDPSNSAALVLLSNIHASVG 780

Query: 551 NWLGAEEVWRVMRAKGLSKSYGFSRI 576
           NW     +  +M+  G+ K  G S I
Sbjct: 781 NWKEVARLRNLMKQMGVQKVPGQSWI 806



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 126/447 (28%), Positives = 224/447 (50%), Gaps = 7/447 (1%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           M  +  Y + L  +      S +   ++   ++I AC   ++ + +G ++H   LKS   
Sbjct: 131 MCKQRHYREALDTFNFHPKNSSIQLESSTYGNLILACTSIRSLK-YGKKIHDHILKSNCQ 189

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
            D V+ N +++MY K    + A + FD M  R+ +SW  +I+ ++QNG    ++ M+ +M
Sbjct: 190 PDLVLQNHILNMYGKCGSLKDARKAFDTMQLRNVVSWTIMISGYSQNGQENDAIIMYIQM 249

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
              G+         II  C   G+++LGRQ+H  VI  G ++  +    AL+ +Y++   
Sbjct: 250 LQSGYFPDPLTFGSIIKACCIAGDIDLGRQLHGHVIKSG-YDHHLIAQNALISMYTRFGQ 308

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV-KPTRVTLTIVLL 239
            + A  VF  +  ++ +SW +MI+G          + LFR M R+G  +P       V  
Sbjct: 309 IVHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGFYQPNEFIFGSVFS 368

Query: 240 ACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI-IFERTKVKDV 298
           AC  L +   G+ IHG     G   +     +L  MY +      P+ I  F + +  D+
Sbjct: 369 ACRSLLEPEFGRQIHGMCAKFGLGRNVFAGCSLCDMYAKF--GFLPSAIRAFYQIESPDL 426

Query: 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCY 358
           V W++II  +S SGD++EA+  F +M    + P+ +T L++L +C     ++ G  +H Y
Sbjct: 427 VSWNAIIAAFSDSGDVNEAIYFFCQMMHTGLMPDGITFLSLLCACGSPVTINQGTQIHSY 486

Query: 359 IMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFHGYGEE 417
           I+K GL+ + ++ N+L+ MY+KC ++  +  +F +++   + VSW  ++S    H    E
Sbjct: 487 IIKIGLDKEAAVCNSLLTMYTKCSNLHDAFNVFKDVSENANLVSWNAILSACLQHKQAGE 546

Query: 418 ALQLFLEMQESGVEPDAITVLAILSAC 444
             +LF  M  S  +PD IT+  IL  C
Sbjct: 547 VFRLFKLMLFSENKPDNITITTILGTC 573



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 135/251 (53%), Gaps = 3/251 (1%)

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREG-VKPTRVTLTIVLLACAELRDLRNGKAIH 254
           E+S  + I+     ++Y   +D F    +   ++    T   ++LAC  +R L+ GK IH
Sbjct: 121 ELSTNSYINLMCKQRHYREALDTFNFHPKNSSIQLESSTYGNLILACTSIRSLKYGKKIH 180

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
            +        D  L   +++MY +C  +L  AR  F+  ++++VV W+ +I GYSQ+G  
Sbjct: 181 DHILKSNCQPDLVLQNHILNMYGKCG-SLKDARKAFDTMQLRNVVSWTIMISGYSQNGQE 239

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
           ++A+ ++ +M      P+ +T  +I+ +C     +  G  +H +++K+G +  +   NAL
Sbjct: 240 NDAIIMYIQMLQSGYFPDPLTFGSIIKACCIAGDIDLGRQLHGHVIKSGYDHHLIAQNAL 299

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV-EPD 433
           ++MY++ G I  +  +F  ++ +D +SW ++I+G+   GY  EAL LF +M   G  +P+
Sbjct: 300 ISMYTRFGQIVHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGFYQPN 359

Query: 434 AITVLAILSAC 444
                ++ SAC
Sbjct: 360 EFIFGSVFSAC 370



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 85/148 (57%), Gaps = 1/148 (0%)

Query: 316 EAMKLFS-RMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
           EA+  F+   +   I+  S T   ++ +CT    L +G  +H +I+K+    D+ + N +
Sbjct: 139 EALDTFNFHPKNSSIQLESSTYGNLILACTSIRSLKYGKKIHDHILKSNCQPDLVLQNHI 198

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           +NMY KCGS+  + + F+ M  R+ VSWT +ISGY  +G   +A+ ++++M +SG  PD 
Sbjct: 199 LNMYGKCGSLKDARKAFDTMQLRNVVSWTIMISGYSQNGQENDAIIMYIQMLQSGYFPDP 258

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMK 462
           +T  +I+ AC  AG +     L  +V+K
Sbjct: 259 LTFGSIIKACCIAGDIDLGRQLHGHVIK 286


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 185/556 (33%), Positives = 310/556 (55%), Gaps = 3/556 (0%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           GL +++ +   V+K C   Q       Q+H   +KS  + +  + N+L+ +Y +  + + 
Sbjct: 23  GLITDSFMYVEVLKRC-LKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQE 81

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A  +FD +  +   SWN++I  + ++     ++ +FREM   G    A     I+  C+ 
Sbjct: 82  ARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACAS 141

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
           +  L+ G+++HA  I  G  E  V V TALL +Y KC     A R+F+ ++  + +SWT 
Sbjct: 142 LSALKWGKEVHA-CIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTV 200

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           MI     S N      L   M++EG KP  +T   +L ACA    L+  K +H +A   G
Sbjct: 201 MIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAG 260

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
            + D  +  AL+ MY + + ++  AR++F+R KV+DVV W+ +I  +++ G   EA  LF
Sbjct: 261 LELDVRVGTALVQMYAK-SGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLF 319

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
            +M+ E  +P+++  L+IL++C     L     +H + + +GL  DV +G AL++MYSK 
Sbjct: 320 LQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKS 379

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
           GSI  +  +F+ M  R+ VSW  +ISG   HG G++AL++F  M   GV+PD +T +A+L
Sbjct: 380 GSIDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVL 439

Query: 442 SACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPS 501
           SAC+HAGLV E  + +  + +   I   + H  C VDLLG++G++ +A   +  M + P 
Sbjct: 440 SACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPD 499

Query: 502 TRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRV 561
                +L+ +CR +G +E+ E++A + ++ +P+NAA Y LLS + +E+G W     V  +
Sbjct: 500 EATWGALLGSCRTYGNVELGELVAKERLKLDPKNAATYVLLSNIYAEAGKWDMVSWVRTM 559

Query: 562 MRAKGLSKSYGFSRIE 577
           MR +G+ K  G S IE
Sbjct: 560 MRERGIRKEPGRSWIE 575



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 135/294 (45%), Gaps = 46/294 (15%)

Query: 314 LSEAMKLFSRMRLER-IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN 372
           LSEA+ +    RL+R +  +S   + +L  C +Q  L     VH  I+K+ +  +  + N
Sbjct: 9   LSEAIVVLMN-RLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMN 67

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
            L+++Y +CG +  +  +F+ +  +   SW  +I+GY  H + E+A++LF EM   GV+P
Sbjct: 68  NLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQP 127

Query: 433 DAITVLAILSAC----------------NHAGL-------------------VKEAETLF 457
           +A T + IL AC                 H GL                   + EA  +F
Sbjct: 128 NAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIF 187

Query: 458 NNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP---MKPSTRILSSLVSACRI 514
           +N+M    I+     +   +    +SG  ++A +++  M     KP+     S+++AC  
Sbjct: 188 DNLMNHDIIS-----WTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACAS 242

Query: 515 HGRLEVAEMLAHQLIEAEPE-NAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567
            G L+  + +    ++A  E +    T L  + ++SG+   A  V+  M+ + +
Sbjct: 243 EGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDV 296


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 183/546 (33%), Positives = 302/546 (55%), Gaps = 3/546 (0%)

Query: 33   VIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYR 92
            V+ A          G Q+H  A+KSG D+D  ++NSL++MY+K      A ++F++M + 
Sbjct: 909  VVLAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHL 968

Query: 93   DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ-IGELELGRQI 151
            D ISWNS+I+   Q+     S+ +F ++   G       LA ++  CS  I  L + RQI
Sbjct: 969  DLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQI 1028

Query: 152  HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQN 211
            H   +  G+   S FV+T L+D+YSK      A  +F+     +   W AM+ G I   +
Sbjct: 1029 HVHALKTGNIADS-FVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGND 1087

Query: 212  YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAA 271
                ++LF  + + G K  ++TL     AC  L  L  GK IH +A   GFD D H+++ 
Sbjct: 1088 GKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSG 1147

Query: 272  LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP 331
            ++ MY +C + ++ A I+F      D V W+S+I G   +G+  +A++++ RMR  R+ P
Sbjct: 1148 ILDMYIKCGDMVN-AGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMP 1206

Query: 332  NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIF 391
            +  T   ++ + +  + L  G  +H  ++K     D  +G +L++MY+KCG+I  ++++F
Sbjct: 1207 DEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLF 1266

Query: 392  NEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVK 451
             +M  R+   W  ++ G   HG  EEA+ LF  M+  G+EPD ++ + ILSAC+HAGL  
Sbjct: 1267 KKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTS 1326

Query: 452  EAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSA 511
            EA    +++  +  I   IEHY+C VD LG++G +++A KV+ TMP K S  I  +L+ A
Sbjct: 1327 EAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGA 1386

Query: 512  CRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSY 571
            CRI G +E  + +A +L   EP ++A Y LLS + + +  W    +  ++M+ K + K  
Sbjct: 1387 CRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDP 1446

Query: 572  GFSRIE 577
            GFS I+
Sbjct: 1447 GFSWID 1452



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 130/472 (27%), Positives = 237/472 (50%), Gaps = 16/472 (3%)

Query: 85   LFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGE 144
            L D+ P  D   WN  ++     G    ++E F  M        A  L  +++  +   +
Sbjct: 862  LSDDNP--DVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDD 919

Query: 145  LELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMIS 204
            LELG+Q+H + +  G  +  V V+ +L+++YSK      A  VF  M   + +SW +MIS
Sbjct: 920  LELGKQVHGIAVKSG-LDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMIS 978

Query: 205  GCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN-GKAIHGYAYCCGFD 263
             C  S   +  ++LF  +  EG+KP   TL  VL AC+ L D  N  + IH +A   G  
Sbjct: 979  SCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNI 1038

Query: 264  FDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSR 323
             D  ++  L+ +Y +  + +  A  +F+     D+  W++++ GY    D  +A++LFS 
Sbjct: 1039 ADSFVATTLIDVYSKSGK-MEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSL 1097

Query: 324  MRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS 383
            +     + + +TL     +C     L  G  +H + +KAG + D+ + + +++MY KCG 
Sbjct: 1098 IHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGD 1157

Query: 384  ITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
            + ++  +FN ++A D V+WT++ISG   +G  ++AL+++  M++S V PD  T   ++ A
Sbjct: 1158 MVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKA 1217

Query: 444  CNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTR 503
             +    +++   L  NV+K   ++      +  VD+  K G IEDA ++   M ++ +  
Sbjct: 1218 SSCVTALEQGRQLHANVIKLDCVSDPFVGTSL-VDMYAKCGNIEDAYRLFKKMNVR-NIA 1275

Query: 504  ILSSLVSACRIHGRLEVA-----EMLAHQLIEAEPENAANYTLLSMVCSESG 550
            + ++++     HG  E A      M +H +   EP+  +   +LS  CS +G
Sbjct: 1276 LWNAMLVGLAQHGNAEEAVNLFKSMKSHGI---EPDRVSFIGILS-ACSHAG 1323



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 129/450 (28%), Positives = 211/450 (46%), Gaps = 44/450 (9%)

Query: 51   HCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCF-----T 105
            H   + SGS  D  +SN+L++MY+K     SA Q+FD  P RD ++WN+I+  +     +
Sbjct: 644  HARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDS 703

Query: 106  QNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSV 165
             +G     L +FR +           LA ++ LC   G L     +H   I  G  E  V
Sbjct: 704  NDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIG-LEWDV 762

Query: 166  FVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
            FVS AL+++YSKC     A  +F+ M  R+ V W  M+ G +          LF    R 
Sbjct: 763  FVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRS 822

Query: 226  GVKPTRVTLTIVLLACAELRDLRNGK----AIHGYAYCCGFDFDHHLSAALMHMYCECTE 281
            G++P   ++ ++L   +E+ +   GK     +  YA       D+               
Sbjct: 823  GLRPDEFSVQLILNGVSEV-NWDEGKWLADQVQAYAAKLSLSDDN--------------- 866

Query: 282  ALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILS 341
                           DV  W+  +     +GD   A++ F  M    I+ ++VTLL +L+
Sbjct: 867  --------------PDVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLA 912

Query: 342  SCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS 401
            +      L  G  VH   +K+GL+ DVS+ N+L+NMYSK G    + ++FN+M   D +S
Sbjct: 913  AVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLIS 972

Query: 402  WTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH--AGLVKEAETLFNN 459
            W ++IS        EE++ LF+++   G++PD  T+ ++L AC+    GL   +  +  +
Sbjct: 973  WNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGL-NISRQIHVH 1031

Query: 460  VMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
             +K   IA +       +D+  KSGK+E+A
Sbjct: 1032 ALKTGNIADSFV-ATTLIDVYSKSGKMEEA 1060



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 106/388 (27%), Positives = 198/388 (51%), Gaps = 4/388 (1%)

Query: 8    EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
            E++++L+   LH  GL  +   L SV++AC+      +   Q+H  ALK+G+ AD  ++ 
Sbjct: 987  EESVNLFIDLLH-EGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVAT 1045

Query: 68   SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
            +LI +Y+K  K E A  LF      D   WN+++  +       ++LE+F  ++  G   
Sbjct: 1046 TLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKS 1105

Query: 128  KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
                LA     C  +  L+ G+QIHA  I  G F+  + V++ +LD+Y KC   + A  V
Sbjct: 1106 DQITLATAAKACGCLVLLDQGKQIHAHAIKAG-FDSDLHVNSGILDMYIKCGDMVNAGIV 1164

Query: 188  FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
            F  +   ++V+WT+MISGC+D+ N D  + ++  M++  V P   T   ++ A + +  L
Sbjct: 1165 FNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTAL 1224

Query: 248  RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
              G+ +H          D  +  +L+ MY +C   +  A  +F++  V+++ +W++++ G
Sbjct: 1225 EQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGN-IEDAYRLFKKMNVRNIALWNAMLVG 1283

Query: 308  YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG-VHCYIMKAGLNF 366
             +Q G+  EA+ LF  M+   IEP+ V+ + ILS+C+     S     +H      G+  
Sbjct: 1284 LAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEP 1343

Query: 367  DVSIGNALMNMYSKCGSITSSHQIFNEM 394
            ++   + L++   + G +  + ++   M
Sbjct: 1344 EIEHYSCLVDALGRAGLVQEADKVIETM 1371



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/199 (36%), Positives = 102/199 (51%), Gaps = 6/199 (3%)

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY- 308
           GK  H      G   DH LS  L+ MY +C  +L  AR +F+ T  +D+V W++I+  Y 
Sbjct: 640 GKCTHARIVVSGSAGDHFLSNNLLTMYSKCG-SLSSARQVFDTTPERDLVTWNAILGAYA 698

Query: 309 ----SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
               S  G+  E + LF  +R        +TL  +L  C     L    GVH Y +K GL
Sbjct: 699 ASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGL 758

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
            +DV +  AL+N+YSKCG +  +  +F+ M  RD V W  ++ GY   G  +EA QLF E
Sbjct: 759 EWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSE 818

Query: 425 MQESGVEPDAITVLAILSA 443
              SG+ PD  +V  IL+ 
Sbjct: 819 FHRSGLRPDEFSVQLILNG 837


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 179/532 (33%), Positives = 301/532 (56%), Gaps = 6/532 (1%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G  +H  A+  G D++ ++ ++++ MY KF + E A ++FD MP +DTI WN++I+ + +
Sbjct: 138 GCVIHGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRK 197

Query: 107 NGFYVRSLEMFREMYLCGFV-LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSV 165
           N  YV S+++FR++       L    L  I+   +++ EL LG QIH+L    G +    
Sbjct: 198 NEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHD- 256

Query: 166 FVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
           +V T  + LYSKC    +A  +F +    + V++ AMI G   +   +  + LF+ +   
Sbjct: 257 YVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLS 316

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
           G K    TL  ++     L  +    AIHGY+    F     +S AL  +Y +  E +  
Sbjct: 317 GAKLKSSTLVSLVPVSGHLMLIY---AIHGYSLKSNFLSHTSVSTALTTVYSKLNE-IES 372

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           AR +F+ +  K +  W+++I GY+Q+G   +A+ LF  M+     PN VT+  ILS+C +
Sbjct: 373 ARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQ 432

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
              LS G  VH  +        + +  AL+ MY+KCGSI  + ++F+ M  ++ V+W T+
Sbjct: 433 LGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTM 492

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           ISGYG HG+G+EAL +F EM  SG+ P  +T L +L AC+HAGLVKE + +FN+++    
Sbjct: 493 ISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYG 552

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
              +++HYAC VD+LG++G ++ A + +  MP++P   +  +L+ ACRIH    +A  ++
Sbjct: 553 FEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPGPSVWETLLGACRIHKDTNLARTVS 612

Query: 526 HQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +L E +P+N   + LLS + S   N+  A  V +  + + L+K+ G++ IE
Sbjct: 613 EKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIE 664



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 97/406 (23%), Positives = 185/406 (45%), Gaps = 14/406 (3%)

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
           Q HA +++ G F   + + T L    S       A  +F  +   +   +  ++ G   +
Sbjct: 38  QTHAQIVLHG-FRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVN 96

Query: 210 QNYDTGIDLFRAMQRE-GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHL 268
           ++  + + +F  +++   +KP   T    + A +  RD R G  IHG A   G D +  L
Sbjct: 97  ESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGCVIHGQAIVDGCDSELLL 156

Query: 269 SAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER 328
            + ++ MY +    +  AR +F+R   KD ++W+++I GY ++    E++++F  +  E 
Sbjct: 157 GSNIVKMYFKFWR-VEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINES 215

Query: 329 -IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
               ++ TLL IL +      L  G+ +H    K G      +    +++YSKCG I  +
Sbjct: 216 CTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMA 275

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHA 447
             +F E    D V++  +I GY  +G  E +L LF E+  SG +  + T+++++    H 
Sbjct: 276 STLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHL 335

Query: 448 GLVK--EAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRIL 505
            L+      +L +N +    ++ A+        +  K  +IE A K+    P K S    
Sbjct: 336 MLIYAIHGYSLKSNFLSHTSVSTAL------TTVYSKLNEIESARKLFDESPEK-SLPSW 388

Query: 506 SSLVSACRIHGRLEVAEMLAHQLIEAE-PENAANYTLLSMVCSESG 550
           ++++S    +G  E A  L  ++  +E   N    T +   C++ G
Sbjct: 389 NAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLG 434



 Score = 44.3 bits (103), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 77/175 (44%), Gaps = 13/175 (7%)

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
           R + +SH    H  I+  G   D+S+   L    S  G+I  +  IF  +   D   +  
Sbjct: 29  RSTSISHLAQTHAQIVLHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNV 88

Query: 405 LISGYGFHGYGEEALQLFLEMQES-GVEPDAITVLAILSAC-----NHAGLVKEAETLFN 458
           L+ G+  +     +L +F  +++S  ++P++ T    +SA      + AG V   + + +
Sbjct: 89  LMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGCVIHGQAIVD 148

Query: 459 NVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACR 513
               E  +   I      V +  K  ++EDA KV   MP K  T + ++++S  R
Sbjct: 149 GCDSELLLGSNI------VKMYFKFWRVEDARKVFDRMPEK-DTILWNTMISGYR 196


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 180/536 (33%), Positives = 304/536 (56%), Gaps = 13/536 (2%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G ++H   + +G +++  +  +++S+YAK  + ++AY++F+ M ++D +SW +++  + Q
Sbjct: 164 GREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQ 223

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           NG   R+L++  +M   G    +  L  I+   + +  L +GR IH      G FE  V 
Sbjct: 224 NGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSG-FESLVN 282

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           V+ ALLD+Y KC    IA  VF+ M  +  VSW  MI GC  +   +     F  M  EG
Sbjct: 283 VTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEG 342

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
             PTRVT+  VLLACA L DL  G  +H        D +  +  +L+ MY +C      A
Sbjct: 343 EVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAA 402

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILS----- 341
            I     K    V W+++I GY+Q+G + EA+ LF  M+ + I+ +  TL+ +++     
Sbjct: 403 SIFNNLEKTN--VTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADF 460

Query: 342 SCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS 401
           S  RQ+   HGL V     +A ++ +V +  AL++MY+KCG+I ++ ++F+ M  R  ++
Sbjct: 461 SVNRQAKWIHGLAV-----RACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVIT 515

Query: 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVM 461
           W  +I GYG HG G+E L LF EMQ+  V+P+ IT L+++SAC+H+G V+E   LF ++ 
Sbjct: 516 WNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQ 575

Query: 462 KEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA 521
           ++  +   ++HY+  VDLLG++G+++DA   +  MP+KP   +L +++ AC+IH  +E+ 
Sbjct: 576 EDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGACKIHKNVELG 635

Query: 522 EMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           E  A +L + +P+    + LL+ + + +  W    +V   M  KGL K+ G S +E
Sbjct: 636 EKAAQKLFKLDPDEGGYHVLLANIYASNSMWDKVAKVRTAMEDKGLHKTPGCSWVE 691



 Score =  220 bits (561), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 146/483 (30%), Positives = 254/483 (52%), Gaps = 33/483 (6%)

Query: 34  IKACAYAQTHQHFGLQLHCTA-----------LKSGSDADPVISNSLISMYAKFSKPESA 82
           I    Y+  H    L  +CT+           +K+G   + +    +IS++ KF     A
Sbjct: 39  IPTRVYSHRHPSVVLLENCTSKKELYQILPFIIKNGFYNEHLFQTKVISLFCKFGSNSEA 98

Query: 83  YQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQI 142
            ++F+ +  +  + ++ ++  + +N     +L  F  M      L     A ++ LC + 
Sbjct: 99  ARVFEHVELKLDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLVVGDYACLLQLCGEN 158

Query: 143 GELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAM 202
            +L+ GR+IH L+I +G FE ++FV TA++ LY+KC     A ++FE+M  ++ VSWT +
Sbjct: 159 LDLKKGREIHGLIITNG-FESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTL 217

Query: 203 ISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGF 262
           ++G   + +    + L   MQ  G KP  VTL  +L A A+++ LR G++IHGYA+  GF
Sbjct: 218 VAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGF 277

Query: 263 DFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFS 322
           +   +++ AL+ MY +C  A   AR++F+  + K VV W+++I G +Q+G+  EA   F 
Sbjct: 278 ESLVNVTNALLDMYFKCGSA-RIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFL 336

Query: 323 RMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCG 382
           +M  E   P  VT++ +L +C     L  G  VH  + K  L+ +VS+ N+L++MYSKC 
Sbjct: 337 KMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCK 396

Query: 383 SITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILS 442
            +  +  IFN +   + V+W  +I GY  +G  +EAL LF  MQ  G++ D  T++ +++
Sbjct: 397 RVDIAASIFNNLEKTN-VTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVIT 455

Query: 443 ACNHAGLVKEAETLF---------NNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVV 493
           A     + ++A+ +          NNV     ++ A+      VD+  K G I+ A K+ 
Sbjct: 456 ALADFSVNRQAKWIHGLAVRACMDNNVF----VSTAL------VDMYAKCGAIKTARKLF 505

Query: 494 STM 496
             M
Sbjct: 506 DMM 508


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 177/534 (33%), Positives = 304/534 (56%), Gaps = 3/534 (0%)

Query: 44  QHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINC 103
           +  G+ LH  ++  G  ++  + ++++ +Y KF++ E A ++FD MP RDT+ WN++I+ 
Sbjct: 129 ERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISG 188

Query: 104 FTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFEL 163
           F++N ++  S+ +F +M   G    +  LA +++  +++ E  LG  I  L    G    
Sbjct: 189 FSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKG-LHS 247

Query: 164 SVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQ 223
            V+V T L+ LYSKC        +F+Q+   + +S+ AMISG   +   ++ + LFR + 
Sbjct: 248 DVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELL 307

Query: 224 REGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEAL 283
             G +    TL  ++        L+  + I   +   G      +S AL  +YC   E +
Sbjct: 308 ASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNE-V 366

Query: 284 HPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC 343
             AR +F+ +  K +  W+++I GY+Q+G    A+ LF  M + ++ PN VT+ +ILS+C
Sbjct: 367 QFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEM-MPQLSPNPVTVTSILSAC 425

Query: 344 TRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWT 403
            +   LS G  VH  I    L  +V +  AL++MY+KCGSI  + Q+F+ M  ++ V+W 
Sbjct: 426 AQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWN 485

Query: 404 TLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKE 463
            +I+GYG HG+G+EAL+LF EM +SG+ P  +T L+IL AC+H+GLV E   +F+++   
Sbjct: 486 AMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANN 545

Query: 464 KKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEM 523
                  EHYAC VD+LG++G++ +A + +  MP++P   +  +L+ AC IH   E+A +
Sbjct: 546 YGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANV 605

Query: 524 LAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            + +L + +PEN   Y LLS + S   N+  A  V +V++ + L+K+ G + IE
Sbjct: 606 ASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIE 659



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 129/499 (25%), Positives = 240/499 (48%), Gaps = 12/499 (2%)

Query: 84  QLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELL-AGIISLCSQI 142
           QLF+++   D   +N +I  F+ NG    S+ ++  +     +       A  IS  S++
Sbjct: 67  QLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRL 126

Query: 143 GELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAM 202
            +  +G  +HA  IVDG    ++FV +A++DLY K     +A +VF+ M  R+ V W  M
Sbjct: 127 EDERVGVLLHAHSIVDGVAS-NLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTM 185

Query: 203 ISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGF 262
           ISG   +  ++  I +F  M   G+     TL  VL A AEL++ R G  I   A   G 
Sbjct: 186 ISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGL 245

Query: 263 DFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFS 322
             D ++   L+ +Y +C ++    RI+F++    D++ ++++I GY+ + +   A+ LF 
Sbjct: 246 HSDVYVLTGLISLYSKCGKSCK-GRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFR 304

Query: 323 RMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCG 382
            +       NS TL+ ++      + L     +    +K G+    S+  AL  +Y +  
Sbjct: 305 ELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLN 364

Query: 383 SITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILS 442
            +  + Q+F+E   +   SW  +ISGY  +G  + A+ LF EM    + P+ +TV +ILS
Sbjct: 365 EVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILS 423

Query: 443 ACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPST 502
           AC   G +   + + + ++K +++   +      VD+  K G I +A ++   M  K + 
Sbjct: 424 ACAQLGALSIGKWV-HGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDK-NV 481

Query: 503 RILSSLVSACRIHGRLEVAEMLAHQLIEAE-PENAANYTLLSMVCSESGNWLGAEEVWRV 561
              +++++   +HG  + A  L ++++++  P     +  +   CS SG      E++  
Sbjct: 482 VTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHS 541

Query: 562 MRAKGLSKSYGFSRIENEY 580
           M     + +YGF  +   Y
Sbjct: 542 M-----ANNYGFQPMSEHY 555



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 101/184 (54%), Gaps = 2/184 (1%)

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
           G  +D      L H + +     H  R +F +    D+ +++ +IRG+S +G    ++ L
Sbjct: 41  GIHYDLSSITKLTHKFFDLGAVAH-VRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFL 99

Query: 321 FSRMR-LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           ++ +R    + P++ T    +S+ +R      G+ +H + +  G+  ++ +G+A++++Y 
Sbjct: 100 YTHLRKXTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYF 159

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           K      + ++F+ M  RD V W T+ISG+  + Y E+++++F++M + G+  D+ T+  
Sbjct: 160 KFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLAT 219

Query: 440 ILSA 443
           +L+A
Sbjct: 220 VLTA 223



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 81/172 (47%), Gaps = 15/172 (8%)

Query: 336 LLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA 395
            L +L++ T    LS  L +   ++  G+++D+S    L + +   G++    Q+FN+++
Sbjct: 17  FLTLLNNATT---LSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVS 73

Query: 396 ARDFVSWTTLISGYGFHGYGEEALQLFLEMQE-SGVEPDAITVLAILSACN-----HAGL 449
             D   +  LI G+  +G  + ++ L+  +++ + + PD  T    +SA +       G+
Sbjct: 74  KPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGV 133

Query: 450 VKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPS 501
           +  A ++ + V     +  AI      VDL  K  + E A KV   MP + +
Sbjct: 134 LLHAHSIVDGVASNLFVGSAI------VDLYFKFTRAELARKVFDVMPERDT 179


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 190/574 (33%), Positives = 324/574 (56%), Gaps = 14/574 (2%)

Query: 7   YEQTLHLYKQ-ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCT-ALKSGSDADPV 64
           Y   L LYK+ +L P     N  +  +V+ ACA  +  +  G  +H   +   G   D +
Sbjct: 105 YRAALDLYKRMDLQP-----NPVVYTTVLGACASIKALEE-GKAIHSRISGTKGLKLDVI 158

Query: 65  ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG 124
           + NSL++MYAK    E A +LF+ M  R   SWN++I  + Q+G +  ++ ++ +M +  
Sbjct: 159 LENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDMDVEP 218

Query: 125 FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
            V        ++S CS +G L+ GR+IHAL+   G+ EL + +  ALL +Y++C     A
Sbjct: 219 SV---RTFTSVLSACSNLGLLDQGRKIHALISSRGT-ELDLSLQNALLTMYARCKCLDDA 274

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
            ++F+++  R+ VSW+AMI+   ++  +D  I+ +  MQ EGV+P   T   VLLACA +
Sbjct: 275 AKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASV 334

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
            DLR G+A+H      G+        AL+ +Y     +L  AR +F++ + +D  +W+ +
Sbjct: 335 GDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYG-SLDEARSLFDQIENRDEGLWTVL 393

Query: 305 IRGYSQSGDLSEAMKLFSRMR-LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           I GYS+ G  +  ++L+  M+   ++    +    ++S+C      +     H  I   G
Sbjct: 394 IGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADG 453

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
           +  D  +  +L+NMYS+ G++ S+ Q+F++M++RD ++WTTLI+GY  HG    AL L+ 
Sbjct: 454 MISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYK 513

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS 483
           EM+  G EP  +T + +L AC+HAGL ++ + LF ++  +  +   I HY+C +DLL ++
Sbjct: 514 EMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRA 573

Query: 484 GKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLS 543
           G++ DA ++++ MP++P+    SSL+ A RIH  ++ A   A Q+ + +P + A+Y LLS
Sbjct: 574 GRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLLS 633

Query: 544 MVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            V + +GN  G   V   M A+G+ K  G S IE
Sbjct: 634 NVHAVTGNLAGMASVRNTMVARGVKKRRGSSWIE 667



 Score =  215 bits (548), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 141/504 (27%), Positives = 251/504 (49%), Gaps = 12/504 (2%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           Q+H   +   + A+  + N ++  Y K     SA   FD +  ++  SW S++  + QNG
Sbjct: 45  QIH-DRISGAASANVFLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLTAYAQNG 103

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
            Y  +L++++ M L    +   +   ++  C+ I  LE G+ IH+ +      +L V + 
Sbjct: 104 HYRAALDLYKRMDLQPNPV---VYTTVLGACASIKALEEGKAIHSRISGTKGLKLDVILE 160

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
            +LL +Y+KC     A R+FE+M  R+  SW AMI+    S +++  I L+  M    V+
Sbjct: 161 NSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDMD---VE 217

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
           P+  T T VL AC+ L  L  G+ IH      G + D  L  AL+ MY  C + L  A  
Sbjct: 218 PSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARC-KCLDDAAK 276

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
           IF+R   +DVV WS++I  ++++    EA++ +S+M+LE + PN  T  ++L +C     
Sbjct: 277 IFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGD 336

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
           L  G  VH  I+  G    +  G AL+++Y+  GS+  +  +F+++  RD   WT LI G
Sbjct: 337 LRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGG 396

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLA-ILSACNHAGLVKEAETLFNNVMKEKKIA 467
           Y   G+    L+L+ EM+ +   P    + + ++SAC   G   +A    +++  +  I+
Sbjct: 397 YSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMIS 456

Query: 468 LAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQ 527
             +      V++  + G +E A +V   M  +  T   ++L++    HG   +A  L  +
Sbjct: 457 DFV-LATSLVNMYSRWGNLESARQVFDKMSSR-DTLAWTTLIAGYAKHGEHGLALGLYKE 514

Query: 528 L-IEAEPENAANYTLLSMVCSESG 550
           + +E    +   + ++   CS +G
Sbjct: 515 MELEGAEPSELTFMVVLYACSHAG 538


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 177/534 (33%), Positives = 304/534 (56%), Gaps = 3/534 (0%)

Query: 44  QHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINC 103
           +  G+ LH  ++  G  ++  + ++++ +Y KF++ E A ++FD MP RDT+ WN++I+ 
Sbjct: 129 ERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISG 188

Query: 104 FTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFEL 163
           F++N ++  S+ +F +M   G    +  LA +++  +++ E  LG  I  L    G    
Sbjct: 189 FSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKG-LHS 247

Query: 164 SVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQ 223
            V+V T L+ LYSKC        +F+Q+   + +S+ AMISG   +   ++ + LFR + 
Sbjct: 248 DVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELL 307

Query: 224 REGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEAL 283
             G +    TL  ++        L+  + I   +   G      +S AL  +YC   E +
Sbjct: 308 ASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNE-V 366

Query: 284 HPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC 343
             AR +F+ +  K +  W+++I GY+Q+G    A+ LF  M + ++ PN VT+ +ILS+C
Sbjct: 367 QFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEM-MPQLSPNPVTVTSILSAC 425

Query: 344 TRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWT 403
            +   LS G  VH  I    L  +V +  AL++MY+KCGSI  + Q+F+ M  ++ V+W 
Sbjct: 426 AQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWN 485

Query: 404 TLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKE 463
            +I+GYG HG+G+EAL+LF EM +SG+ P  +T L+IL AC+H+GLV E   +F+++   
Sbjct: 486 AMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANN 545

Query: 464 KKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEM 523
                  EHYAC VD+LG++G++ +A + +  MP++P   +  +L+ AC IH   E+A +
Sbjct: 546 YGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANV 605

Query: 524 LAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            + +L + +PEN   Y LLS + S   N+  A  V +V++ + L+K+ G + IE
Sbjct: 606 ASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIE 659



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 129/499 (25%), Positives = 240/499 (48%), Gaps = 12/499 (2%)

Query: 84  QLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELL-AGIISLCSQI 142
           QLF+++   D   +N +I  F+ NG    S+ ++  +     +       A  IS  S++
Sbjct: 67  QLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRL 126

Query: 143 GELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAM 202
            +  +G  +HA  IVDG    ++FV +A++DLY K     +A +VF+ M  R+ V W  M
Sbjct: 127 EDERVGVLLHAHSIVDGVAS-NLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTM 185

Query: 203 ISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGF 262
           ISG   +  ++  I +F  M   G+     TL  VL A AEL++ R G  I   A   G 
Sbjct: 186 ISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGL 245

Query: 263 DFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFS 322
             D ++   L+ +Y +C ++    RI+F++    D++ ++++I GY+ + +   A+ LF 
Sbjct: 246 HSDVYVLTGLISLYSKCGKSCK-GRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFR 304

Query: 323 RMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCG 382
            +       NS TL+ ++      + L     +    +K G+    S+  AL  +Y +  
Sbjct: 305 ELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLN 364

Query: 383 SITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILS 442
            +  + Q+F+E   +   SW  +ISGY  +G  + A+ LF EM    + P+ +TV +ILS
Sbjct: 365 EVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILS 423

Query: 443 ACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPST 502
           AC   G +   + + + ++K +++   +      VD+  K G I +A ++   M  K + 
Sbjct: 424 ACAQLGALSIGKWV-HGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDK-NV 481

Query: 503 RILSSLVSACRIHGRLEVAEMLAHQLIEAE-PENAANYTLLSMVCSESGNWLGAEEVWRV 561
              +++++   +HG  + A  L ++++++  P     +  +   CS SG      E++  
Sbjct: 482 VTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHS 541

Query: 562 MRAKGLSKSYGFSRIENEY 580
           M     + +YGF  +   Y
Sbjct: 542 M-----ANNYGFQPMSEHY 555



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 102/184 (55%), Gaps = 2/184 (1%)

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
           G  +D      L H + +     H  R +F +    D+ +++ +IRG+S +G    ++ L
Sbjct: 41  GIHYDLSSITKLTHKFFDLGAVAH-VRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFL 99

Query: 321 FSRMRLE-RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           ++ +R +  + P++ T    +S+ +R      G+ +H + +  G+  ++ +G+A++++Y 
Sbjct: 100 YTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYF 159

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           K      + ++F+ M  RD V W T+ISG+  + Y E+++++F++M + G+  D+ T+  
Sbjct: 160 KFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLAT 219

Query: 440 ILSA 443
           +L+A
Sbjct: 220 VLTA 223



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 81/172 (47%), Gaps = 15/172 (8%)

Query: 336 LLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA 395
            L +L++ T    LS  L +   ++  G+++D+S    L + +   G++    Q+FN+++
Sbjct: 17  FLTLLNNATT---LSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVS 73

Query: 396 ARDFVSWTTLISGYGFHGYGEEALQLFLEM-QESGVEPDAITVLAILSACN-----HAGL 449
             D   +  LI G+  +G  + ++ L+  + +++ + PD  T    +SA +       G+
Sbjct: 74  KPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGV 133

Query: 450 VKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPS 501
           +  A ++ + V     +  AI      VDL  K  + E A KV   MP + +
Sbjct: 134 LLHAHSIVDGVASNLFVGSAI------VDLYFKFTRAELARKVFDVMPERDT 179


>gi|15227623|ref|NP_178437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216181|sp|Q9ZQ74.1|PP146_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03380, mitochondrial; Flags: Precursor
 gi|4335760|gb|AAD17437.1| unknown protein [Arabidopsis thaliana]
 gi|330250600|gb|AEC05694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 181/562 (32%), Positives = 313/562 (55%), Gaps = 7/562 (1%)

Query: 18  LHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFS 77
           L   G   +  +    +KAC   Q   + G ++HC  +K  S  D V+   L+ MYAK  
Sbjct: 133 LMKHGFRYDDIVFSKALKACTELQDLDN-GKKIHCQLVKVPS-FDNVVLTGLLDMYAKCG 190

Query: 78  KPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS 137
           + +SA+++F+++  R+ + W S+I  + +N      L +F  M     +        +I 
Sbjct: 191 EIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIM 250

Query: 138 LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197
            C+++  L  G+  H  ++  G  ELS  + T+LLD+Y KC     A RVF +    + V
Sbjct: 251 ACTKLSALHQGKWFHGCLVKSG-IELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLV 309

Query: 198 SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
            WTAMI G   + + +  + LF+ M+   +KP  VT+  VL  C  + +L  G+++HG +
Sbjct: 310 MWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLS 369

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
              G  +D +++ AL+HMY +C +    A+ +FE    KD+V W+SII G+SQ+G + EA
Sbjct: 370 IKVGI-WDTNVANALVHMYAKCYQN-RDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEA 427

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL--NFDVSIGNALM 375
           + LF RM  E + PN VT+ ++ S+C     L+ G  +H Y +K G   +  V +G AL+
Sbjct: 428 LFLFHRMNSESVTPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALL 487

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           + Y+KCG   S+  IF+ +  ++ ++W+ +I GYG  G    +L+LF EM +   +P+  
Sbjct: 488 DFYAKCGDPQSARLIFDTIEEKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNES 547

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           T  +ILSAC H G+V E +  F+++ K+     + +HY C VD+L ++G++E A  ++  
Sbjct: 548 TFTSILSACGHTGMVNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEK 607

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGA 555
           MP++P  R   + +  C +H R ++ E++  ++++  P++A+ Y L+S + +  G W  A
Sbjct: 608 MPIQPDVRCFGAFLHGCGMHSRFDLGEIVIKKMLDLHPDDASYYVLVSNLYASDGRWNQA 667

Query: 556 EEVWRVMRAKGLSKSYGFSRIE 577
           +EV  +M+ +GLSK  G S +E
Sbjct: 668 KEVRNLMKQRGLSKIAGHSTME 689



 Score =  228 bits (582), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 144/504 (28%), Positives = 255/504 (50%), Gaps = 7/504 (1%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           Q H     +G   D  I+  L+S+Y  F   + A  +FD++P  D   W  ++ C+  N 
Sbjct: 62  QSHGVLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFDQIPEPDFYLWKVMLRCYCLNK 121

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
             V  ++++  +   GF     + +  +  C+++ +L+ G++IH  ++   SF+  V   
Sbjct: 122 ESVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDNGKKIHCQLVKVPSFDNVVL-- 179

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
           T LLD+Y+KC     A +VF  + +RN V WT+MI+G + +   + G+ LF  M+   V 
Sbjct: 180 TGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVL 239

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
               T   +++AC +L  L  GK  HG     G +    L  +L+ MY +C +  +  R+
Sbjct: 240 GNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRV 299

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
             E + V D+V+W+++I GY+ +G ++EA+ LF +M+   I+PN VT+ ++LS C     
Sbjct: 300 FNEHSHV-DLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIEN 358

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
           L  G  VH   +K G+ +D ++ NAL++MY+KC     +  +F   + +D V+W ++ISG
Sbjct: 359 LELGRSVHGLSIKVGI-WDTNVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISG 417

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468
           +  +G   EAL LF  M    V P+ +TV ++ SAC   G +    +L    +K   +A 
Sbjct: 418 FSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLAS 477

Query: 469 AIEHYA-CYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG-RLEVAEMLAH 526
           +  H     +D   K G  + A  +  T+  K +T   S+++      G  +   E+   
Sbjct: 478 SSVHVGTALLDFYAKCGDPQSARLIFDTIEEK-NTITWSAMIGGYGKQGDTIGSLELFEE 536

Query: 527 QLIEAEPENAANYTLLSMVCSESG 550
            L + +  N + +T +   C  +G
Sbjct: 537 MLKKQQKPNESTFTSILSACGHTG 560


>gi|356506341|ref|XP_003521943.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial-like [Glycine max]
          Length = 895

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 193/569 (33%), Positives = 314/569 (55%), Gaps = 15/569 (2%)

Query: 14  YKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMY 73
           + + +H  G+  +     S +  C +      FG QLH   +K G   +  I N+L++MY
Sbjct: 162 FARSMHYCGIAFDPVTYTSALAFC-WGDHGFLFGWQLHSLVVKCGLGCEVFIGNALVTMY 220

Query: 74  AKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG--FYVRSLEMFREMYLCGFVLKAEL 131
           +++   + A ++FDEMP RD +SWN++I+ + Q G  + + ++ +F  M   G ++    
Sbjct: 221 SRWGMLDEARRVFDEMPERDLVSWNAMISGYAQEGKCYGLEAVLLFVNMVRHGMLIDHVS 280

Query: 132 LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM 191
           L G +S C  +  LELGRQIH L    G +   V V   L+  YSKC     A  VFE +
Sbjct: 281 LTGAVSACGHMKNLELGRQIHGLTQKVG-YGTHVSVCNVLMSTYSKCEVPKDAKAVFESI 339

Query: 192 VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL-RNG 250
             RN VSWT MIS  ID ++    + LF AM+  GV P  VT  I L+    +R+L   G
Sbjct: 340 SNRNVVSWTTMIS--IDEED---AVSLFNAMRVNGVYPNDVTF-IGLIHAVTIRNLVTEG 393

Query: 251 KAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQ 310
             IHG      F  +  +S + + MY +  E +  +  IFE    ++ V W+++I GY+Q
Sbjct: 394 LTIHGLCIKSCFLSEQTVSNSFITMYAK-FECIQESTKIFEELNCRETVSWNALISGYAQ 452

Query: 311 SGDLSEAMKLFSRMRLERIEPNSVTLLAILSS--CTRQSFLSHGLGVHCYIMKAGLNFDV 368
           +G   EA+  +    ++ I+PN  T  ++L++        L+HG   H +++K GL  D 
Sbjct: 453 NGSYKEALLTYLSA-VKEIKPNQYTFGSVLNAIAAAEDISLNHGKSCHSHLLKLGLGTDP 511

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
            +  AL++MY K G I  S ++FNE   R   +WT +IS Y  HG  E  + L+ EM+  
Sbjct: 512 IVSGALLDMYGKRGDIIESQRVFNETLERTQFAWTAIISAYARHGDFESVMSLYTEMERE 571

Query: 429 GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIED 488
           G+ PD+IT L++L+AC   G+V     +F++++K+  I    EHY+  VD+LG+ G++++
Sbjct: 572 GINPDSITFLSVLAACCRKGMVDAGHRVFDSMVKKHSIEPTSEHYSIMVDMLGRVGRLDE 631

Query: 489 ACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSE 548
           A +++  +P  P   +L SL+ +CR+HG +E+AE +  +LIE +P ++  Y L++ + +E
Sbjct: 632 AEELMHQIPGGPGLSVLQSLLGSCRLHGNMEMAEKVVGRLIEMDPASSGPYVLMANLYAE 691

Query: 549 SGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            G W    EV R MR +G+ K  GFS ++
Sbjct: 692 KGKWEKVAEVRRGMRGRGVKKEVGFSWVD 720



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 112/377 (29%), Positives = 182/377 (48%), Gaps = 14/377 (3%)

Query: 83  YQLFDEMPYRDTISWN-SIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           +  FD +P+ +  S N S++NC   +    ++L  F+  +    +   + +   +SL + 
Sbjct: 31  HHQFDFIPHPNAASVNHSMLNCL-HSRLPFQALTAFKNHFQLHSLENVDEVTVALSLKAC 89

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
            GE +LG QIH   +  G F   V VS +L+ +Y K  ++  AL VFE +   + VSW  
Sbjct: 90  QGESKLGCQIHGFAVCSG-FVSFVTVSNSLMKMYCKSGNFGKALIVFENLSHPDIVSWNT 148

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           ++SG  +S +    ++  R+M   G+    VT T  L  C        G  +H     CG
Sbjct: 149 VLSGFEESVD---ALNFARSMHYCGIAFDPVTYTSALAFCWGDHGFLFGWQLHSLVVKCG 205

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS--EAMK 319
              +  +  AL+ MY      L  AR +F+    +D+V W+++I GY+Q G     EA+ 
Sbjct: 206 LGCEVFIGNALVTMYSRWG-MLDEARRVFDEMPERDLVSWNAMISGYAQEGKCYGLEAVL 264

Query: 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           LF  M    +  + V+L   +S+C     L  G  +H    K G    VS+ N LM+ YS
Sbjct: 265 LFVNMVRHGMLIDHVSLTGAVSACGHMKNLELGRQIHGLTQKVGYGTHVSVCNVLMSTYS 324

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           KC     +  +F  ++ R+ VSWTT+IS        E+A+ LF  M+ +GV P+ +T + 
Sbjct: 325 KCEVPKDAKAVFESISNRNVVSWTTMIS-----IDEEDAVSLFNAMRVNGVYPNDVTFIG 379

Query: 440 ILSACNHAGLVKEAETL 456
           ++ A     LV E  T+
Sbjct: 380 LIHAVTIRNLVTEGLTI 396


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 189/548 (34%), Positives = 297/548 (54%), Gaps = 3/548 (0%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEM 89
           L +V+K CA   + +  G  LH  AL+SG + D  +  SL+ MY+K      A ++F ++
Sbjct: 54  LSTVLKGCANTGSLRE-GKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKI 112

Query: 90  PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGR 149
              D ++W+++I    Q G    + E+F  M   G       L+ ++S  + +G+L  G+
Sbjct: 113 RNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQ 172

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
            IH  +   G FE    VS  L+ +Y K        +VFE M   + VSW A++SG  DS
Sbjct: 173 SIHGCICKYG-FESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDS 231

Query: 210 QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS 269
           Q    G  +F  M  EG KP   T   VL +C+ L D   GK +H +      D D  + 
Sbjct: 232 QTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVG 291

Query: 270 AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
            AL+ MY +    L  A + F+R   +D+  W+ II GY+Q+    +A+K F +M+ E I
Sbjct: 292 TALVDMYAK-ARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGI 350

Query: 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
           +PN  TL + LS C+  + L +G  +H   +KAG   D+ +G+AL+++Y KCG +  +  
Sbjct: 351 KPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEA 410

Query: 390 IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL 449
           IF  + +RD VSW T+ISGY  HG GE+AL+ F  M   G+ PD  T + +LSAC+  GL
Sbjct: 411 IFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGL 470

Query: 450 VKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLV 509
           V+E +  F+++ K   I  +IEHYAC VD+LG++GK  +    +  M + P + I  +++
Sbjct: 471 VEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKFNEVKIFIEEMNLTPYSLIWETVL 530

Query: 510 SACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSK 569
            AC++HG ++  E  A +L E EP   ++Y LLS + +  G W     +  +M ++G+ K
Sbjct: 531 GACKLHGNVDFGEKAAKKLFEMEPMMDSSYILLSNIFASKGRWDDVRNIRALMTSRGIKK 590

Query: 570 SYGFSRIE 577
             G S +E
Sbjct: 591 EPGCSWVE 598



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 148/504 (29%), Positives = 257/504 (50%), Gaps = 26/504 (5%)

Query: 80  ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLC 139
           E A +LF  MP ++ +SWN+++N + Q G   + L++F +M  C        L+ ++  C
Sbjct: 2   ELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGC 61

Query: 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSW 199
           +  G L  G+ +HAL +  G  E+  F+  +L+D+YSKC     AL+VF ++   + V+W
Sbjct: 62  ANTGSLREGKVLHALALRSGC-EIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAW 120

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
           +AMI+G     +     +LF  M+R+G +P + TL+ ++     + DLR G++IHG    
Sbjct: 121 SAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICK 180

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
            GF+ D+ +S  L+ MY + +  +     +FE     D+V W++++ G+  S       +
Sbjct: 181 YGFESDNLVSNPLIMMYMK-SRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPR 239

Query: 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           +F +M LE  +PN  T +++L SC+       G  VH +I+K   + D  +G AL++MY+
Sbjct: 240 IFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYA 299

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           K   +  +   F+ +  RD  SWT +ISGY      E+A++ F +MQ  G++P+  T+ +
Sbjct: 300 KARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLAS 359

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY------ACYVDLLGKSGKIEDACKVV 493
            LS C+H   ++    L         +A+   H+      +  VDL GK G +E A  + 
Sbjct: 360 CLSGCSHMATLENGRQL-------HAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIF 412

Query: 494 STMPMKPSTRILS--SLVSACRIHGRLEVA-EMLAHQLIEAEPENAANYTLLSMVCSESG 550
             +    S  I+S  +++S    HG+ E A E     L E    + A +  +   CS   
Sbjct: 413 KGL---ISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACS--- 466

Query: 551 NWLGAEEVWRVMRAKGLSKSYGFS 574
            ++G  E  +  R   +SK YG +
Sbjct: 467 -FMGLVEEGK-KRFDSMSKIYGIN 488


>gi|115461454|ref|NP_001054327.1| Os04g0686500 [Oryza sativa Japonica Group]
 gi|38345824|emb|CAE01858.2| OSJNBa0070M12.7 [Oryza sativa Japonica Group]
 gi|113565898|dbj|BAF16241.1| Os04g0686500 [Oryza sativa Japonica Group]
 gi|215766744|dbj|BAG98972.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222629815|gb|EEE61947.1| hypothetical protein OsJ_16704 [Oryza sativa Japonica Group]
          Length = 690

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 187/534 (35%), Positives = 295/534 (55%), Gaps = 7/534 (1%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G+QLH   +K G  +D +++N+LI MYAK  K   A ++FD MP R+ +SW +++  F  
Sbjct: 23  GVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMPERNVVSWTALMVGFLH 82

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           +G     L +F EM   G       L+  +  C   G    G QIH + +  G FE    
Sbjct: 83  HGEARECLRLFGEMRGSGTSPNEFTLSATLKACG--GGTRAGVQIHGVCVRTG-FEGHDV 139

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE- 225
           V+ +L+ +YSK      A RVF+ +  RN  +W +MISG   +      + +FR MQR  
Sbjct: 140 VANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQGRDSLLVFREMQRRH 199

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH--LSAALMHMYCECTEAL 283
             +P   T   +L AC+ L   R G  +H      G     +  L+ AL+ +Y +C   L
Sbjct: 200 DEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGALLDVYVKCHR-L 258

Query: 284 HPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC 343
             A  +F+  + ++ + W+++I G++Q G + EAM LF R     +  +   L ++++  
Sbjct: 259 PVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADGHVLSSVVAVF 318

Query: 344 TRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWT 403
              + +  G  VHCY  K     DVS+ N+L++MY KCG    + + F EM AR+ VSWT
Sbjct: 319 ADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFREMPARNVVSWT 378

Query: 404 TLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKE 463
            +I+G G HG+G EA+ LF EMQE GVE D +  LA+LSAC+H+GLV E    F+ + ++
Sbjct: 379 AMINGVGKHGHGREAIDLFEEMQEEGVEADEVAYLALLSACSHSGLVDECRRYFSRICQD 438

Query: 464 KKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEM 523
           +++    EHYAC VDLLG++G++ +A +++ +MPM+P+  +  +L+SACR+H  + V   
Sbjct: 439 RRMRPKAEHYACMVDLLGRAGELREAKELILSMPMEPTVGVWQTLLSACRVHKDVAVGRE 498

Query: 524 LAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +   L+  + +N  NY +LS + +E+G W   + +   MR KGL K  G S  E
Sbjct: 499 VGDVLLAVDGDNPVNYVMLSNILAEAGEWRECQGIRGAMRRKGLRKQGGCSWTE 552



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 114/224 (50%), Gaps = 4/224 (1%)

Query: 231 RVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIF 290
           R  +  +L A A    LR G  +H      GF  D  L+  L+ MY +C + LH A  +F
Sbjct: 4   RRMIADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGK-LHMAGEVF 62

Query: 291 ERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLS 350
           +    ++VV W++++ G+   G+  E ++LF  MR     PN  TL A L +C   +   
Sbjct: 63  DGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACGGGT--R 120

Query: 351 HGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYG 410
            G+ +H   ++ G      + N+L+ MYSK      + ++F+ + +R+  +W ++ISGY 
Sbjct: 121 AGVQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYA 180

Query: 411 FHGYGEEALQLFLEMQESGVE-PDAITVLAILSACNHAGLVKEA 453
             G G ++L +F EMQ    E PD  T  ++L AC+  G  +E 
Sbjct: 181 HAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREG 224


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  334 bits (856), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 185/574 (32%), Positives = 327/574 (56%), Gaps = 6/574 (1%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGS-DADPVI 65
           +E+TL L+   +  +G   +   +P  +KACA  +  +  G  +H  A K+    +D  +
Sbjct: 83  WEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLE-LGKVIHGFAKKNDEIGSDMFV 141

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG- 124
            ++L+ +Y+K  +   A ++F+E    DT+ W S++  + QN     +L +F +M +   
Sbjct: 142 GSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDC 201

Query: 125 FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
            VL    L  ++S C+Q+  ++ G  +H LVI    F+  + +  +LL+LY+K     IA
Sbjct: 202 VVLDPVTLVSVVSACAQLLNVKAGSCVHGLVI-RREFDGDLPLVNSLLNLYAKTGCEKIA 260

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
             +F +M  ++ +SW+ MI+   +++  +  ++LF  M  +  +P  VT+   L ACA  
Sbjct: 261 ANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVS 320

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
           R+L  GK IH  A   GF+ D  +S AL+ MY +C+     A  +F+R   KDVV W ++
Sbjct: 321 RNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCS-CPDEAVDLFQRLPKKDVVSWVAL 379

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
           + GY+Q+G   ++M +F  M  + I+P++V ++ IL++ +        L +H Y++++G 
Sbjct: 380 LSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGF 439

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
           N +V +G +L+ +YSKCGS+  + ++F  M  RD V W+++I+ YG HG G EAL++F +
Sbjct: 440 NSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQ 499

Query: 425 M-QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS 483
           M + S V P+ +T L+ILSAC+HAGLV+E   +F+ ++ + ++    EH+   VDLLG+ 
Sbjct: 500 MVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRI 559

Query: 484 GKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLS 543
           G++  A  +++ MP+     +  +L+ ACRIH  +E+ E  A  L   +P +A  Y LLS
Sbjct: 560 GQLGKAMDIINRMPIPAGPHVWGALLGACRIHHNIEMGEAAAKNLFWLDPSHAGYYILLS 619

Query: 544 MVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            + +  G W    E+   ++ +GL K +G S +E
Sbjct: 620 NIYAVDGKWDNVAELRTRIKERGLKKMFGQSMVE 653



 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 144/391 (36%), Positives = 234/391 (59%), Gaps = 1/391 (0%)

Query: 187  VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
            VFE +       W  MI G      + + ++L+  M  +G+KP +      L +CA L D
Sbjct: 774  VFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSD 833

Query: 247  LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
            L+ GK IH +  CCG   D  + AAL+ MY +C + +  AR++F++  V+D+V W+S+I 
Sbjct: 834  LQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGD-IEAARLVFDKMAVRDLVSWTSMIS 892

Query: 307  GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
            GY+ +G  SE +  F  MR   + PN V++L++L +C     L  G   H Y+++ G  F
Sbjct: 893  GYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEF 952

Query: 367  DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
            D+ +  A+M+MYSKCGS+  +  +F+E A +D V W+ +I+ YG HG+G +A+ LF +M 
Sbjct: 953  DILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMV 1012

Query: 427  ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
            ++GV P  +T   +LSAC+H+GL++E +  F  + +E  IA  + +YAC VDLLG++G++
Sbjct: 1013 KAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQL 1072

Query: 487  EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546
             +A  ++  MP++P   I  SL+ ACRIH  L++AE +A  L   +P +A  + LLS + 
Sbjct: 1073 SEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIY 1132

Query: 547  SESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +    W   E+V ++M  +G +K  GFS +E
Sbjct: 1133 AAKSRWNEVEKVRKMMARRGANKIQGFSLVE 1163



 Score =  238 bits (607), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 160/527 (30%), Positives = 271/527 (51%), Gaps = 13/527 (2%)

Query: 29  ILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDE 88
           +L  + +AC   ++      QLH    K+G   D   +  L S+YAK +  ++A ++FDE
Sbjct: 6   VLVDLFQACNNGRSVS----QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDE 61

Query: 89  MPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISL--CSQIGELE 146
            P+ +   WNS +  + +   +  +L +F  M +C      +     I+L  C+ +  LE
Sbjct: 62  TPHPNVHLWNSTLRSYCREKQWEETLRLFHLM-ICTAGEAPDNFTIPIALKACAGLRMLE 120

Query: 147 LGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGC 206
           LG+ IH     +      +FV +AL++LYSKC     AL+VFE+    + V WT+M++G 
Sbjct: 121 LGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGY 180

Query: 207 IDSQNYDTGIDLFRAM-QREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFD 265
             + + +  + LF  M   + V    VTL  V+ ACA+L +++ G  +HG      FD D
Sbjct: 181 QQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGD 240

Query: 266 HHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR 325
             L  +L+++Y + T     A  +F +   KDV+ WS++I  Y+ +   +EA+ LF  M 
Sbjct: 241 LPLVNSLLNLYAK-TGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMI 299

Query: 326 LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSIT 385
            +R EPNSVT+++ L +C     L  G  +H   +  G   D S+  AL++MY KC    
Sbjct: 300 EKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPD 359

Query: 386 SSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
            +  +F  +  +D VSW  L+SGY  +G   +++ +F  M   G++PDA+ V+ IL+A +
Sbjct: 360 EAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASS 419

Query: 446 HAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRIL 505
             G+ ++A  L   V++       +   A  ++L  K G + DA K+   M ++    I 
Sbjct: 420 ELGIFQQALCLHGYVVRS-GFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVR-DVVIW 477

Query: 506 SSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV--CSESG 550
           SS+++A  IHGR   A  +  Q+++       N T LS++  CS +G
Sbjct: 478 SSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAG 524



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 123/400 (30%), Positives = 192/400 (48%), Gaps = 43/400 (10%)

Query: 49   QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
            + H      G   D  I      MY  F++ ++A  +F+++P   +  WN +I  F  +G
Sbjct: 738  KTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDG 797

Query: 109  FYVRSLEMFREMYLCGFVLKAELLAGIISL--CSQIGELELGRQIHALVIVDGSFELSVF 166
             ++ SLE++ +M   G  LK +  A   +L  C+ + +L+ G+ IH  ++  G     +F
Sbjct: 798  RFLSSLELYSKMMEKG--LKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSN-DLF 854

Query: 167  VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
            V  AL+D+Y+KC     A  VF++M +R+ VSWT+MISG   +      +  F  M+  G
Sbjct: 855  VDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSG 914

Query: 227  VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
            V P RV++  VLLAC  L  LR G+  H Y    GF+FD  ++ A+M MY +C  +L  A
Sbjct: 915  VIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCG-SLDLA 973

Query: 287  RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
            R +F+ T  KD+V WS++I  Y   G   +A+ LF +M    + P+ VT   +LS+C+  
Sbjct: 974  RCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHS 1033

Query: 347  SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNE--MAARDFVSWTT 404
              L  G                        MY          Q+  E  + AR   ++  
Sbjct: 1034 GLLEEG-----------------------KMY---------FQLMTEEFVIARKLSNYAC 1061

Query: 405  LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
            ++   G  G   EA+ L   M    VEPDA    ++L AC
Sbjct: 1062 MVDLLGRAGQLSEAVDLIENMP---VEPDASIWGSLLGAC 1098



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 153/302 (50%), Gaps = 6/302 (1%)

Query: 251  KAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQ 310
            K  H   +  G  +D  +      MY      +  A I+FE        +W+ +IRG++ 
Sbjct: 737  KKTHAKIFAYGLQYDSRILTKFAIMYVSFNR-IDAASIVFEDIPNPCSFLWNVMIRGFAT 795

Query: 311  SGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSI 370
             G    +++L+S+M  + ++P+       L SC   S L  G  +H +++  G + D+ +
Sbjct: 796  DGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFV 855

Query: 371  GNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV 430
              AL++MY+KCG I ++  +F++MA RD VSWT++ISGY  +GY  E L  F  M+ SGV
Sbjct: 856  DAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGV 915

Query: 431  EPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDAC 490
             P+ +++L++L AC + G +++ E  F++ + +      I      +D+  K G + D  
Sbjct: 916  IPNRVSILSVLLACGNLGALRKGE-WFHSYVIQTGFEFDILVATAIMDMYSKCGSL-DLA 973

Query: 491  KVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLSMVCSE 548
            + +            S+++++  IHG    A  L  Q+++A   P +     +LS  CS 
Sbjct: 974  RCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLS-ACSH 1032

Query: 549  SG 550
            SG
Sbjct: 1033 SG 1034



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/335 (28%), Positives = 155/335 (46%), Gaps = 39/335 (11%)

Query: 10   TLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSL 69
            +L LY + +   GL  +    P  +K+CA     Q  G  +H   +  G   D  +  +L
Sbjct: 802  SLELYSKMME-KGLKPDKFAFPFALKSCAGLSDLQR-GKVIHQHLVCCGCSNDLFVDAAL 859

Query: 70   ISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKA 129
            + MYAK    E+A  +FD+M  RD +SW S+I+ +  NG+   +L  F  M   G +   
Sbjct: 860  VDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNR 919

Query: 130  ELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
              +  ++  C  +G L  G   H+ VI  G FE  + V+TA++D+YSKC    +A  +F+
Sbjct: 920  VSILSVLLACGNLGALRKGEWFHSYVIQTG-FEFDILVATAIMDMYSKCGSLDLARCLFD 978

Query: 190  QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
            +   ++ V W+AMI+      +    IDLF  M + GV+P+ VT T VL AC+    L  
Sbjct: 979  ETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEE 1038

Query: 250  GKAIHGYAYCCGFDFDHHLSAALMHMYCEC-TEALHPARIIFERTKVKDVVIWSSIIRGY 308
            GK                       MY +  TE    AR +     + D++         
Sbjct: 1039 GK-----------------------MYFQLMTEEFVIARKLSNYACMVDLL--------- 1066

Query: 309  SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC 343
             ++G LSEA+ L   M    +EP++    ++L +C
Sbjct: 1067 GRAGQLSEAVDLIENM---PVEPDASIWGSLLGAC 1098



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 90/197 (45%), Gaps = 2/197 (1%)

Query: 18   LHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFS 77
            +  SG+  N   + SV+ AC      +  G   H   +++G + D +++ +++ MY+K  
Sbjct: 910  MRSSGVIPNRVSILSVLLACGNLGALRK-GEWFHSYVIQTGFEFDILVATAIMDMYSKCG 968

Query: 78   KPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS 137
              + A  LFDE   +D + W+++I  +  +G   +++++F +M   G          ++S
Sbjct: 969  SLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLS 1028

Query: 138  LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197
             CS  G LE G+    L+  +      +     ++DL  +      A+ + E M +  + 
Sbjct: 1029 ACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDA 1088

Query: 198  S-WTAMISGCIDSQNYD 213
            S W +++  C    N D
Sbjct: 1089 SIWGSLLGACRIHNNLD 1105


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  334 bits (856), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 184/562 (32%), Positives = 309/562 (54%), Gaps = 3/562 (0%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
            E+  SGL  +   + S++ ACA     Q  G QLH   LK+G   D +   SL+ +Y K
Sbjct: 234 DEMQLSGLRPDCVTVASLLAACASVGDLQK-GKQLHSYLLKAGMSFDYITEGSLLDLYVK 292

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
               E+A+ +F+     + + WN ++  + Q     +S E+F +M   G          I
Sbjct: 293 CGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCI 352

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           +  C+  G++ELG QIH+L I +G FE  ++VS  L+D+YSK      A ++ E +  R+
Sbjct: 353 LRTCTCTGQIELGEQIHSLSIKNG-FESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRD 411

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
            VSWT+MI+G +     +  +  F+ MQ  GV P  + L     ACA ++ +R G  IH 
Sbjct: 412 VVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHA 471

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
             Y  G+  D  +   L+++Y  C  +   A  +F     KD + W+ +I G+ QS    
Sbjct: 472 RVYVSGYAADISIWNTLVNLYARCGRS-EEAFSLFREIDHKDEITWNGLISGFGQSRLYE 530

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           +A+ +F +M     + N  T ++ +S+    + +  G  VH   +K G   +  + NAL+
Sbjct: 531 QALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALI 590

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           ++Y KCGSI  +  IF+EM+ R+ VSW T+I+    HG G EAL LF +M++ G++P+ +
Sbjct: 591 SLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDV 650

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           T + +L+AC+H GLV+E  + F ++     +    +HYAC VD+LG++G+++ A + V  
Sbjct: 651 TFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDE 710

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGA 555
           MP+  +  I  +L+SAC++H  +E+ E+ A  L+E EP ++A+Y LLS   + +G W   
Sbjct: 711 MPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANR 770

Query: 556 EEVWRVMRAKGLSKSYGFSRIE 577
           ++V ++M+ +G+ K  G S IE
Sbjct: 771 DQVRKMMKDRGIRKEPGRSWIE 792



 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 141/463 (30%), Positives = 237/463 (51%), Gaps = 3/463 (0%)

Query: 27  TAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLF 86
           +A L   ++AC          L++H T++  G  AD +I N LI +YAK      A Q+F
Sbjct: 42  SADLTCALQACRGRGNRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVF 101

Query: 87  DEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELE 146
            E+  RD +SW ++++ + Q G    +  ++ +M+    +    +L+ ++S C++     
Sbjct: 102 KELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFA 161

Query: 147 LGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGC 206
            GR IHA V    +F    FV  AL+ LY     + +A RVF  M+  + V++  +ISG 
Sbjct: 162 QGRMIHAQVYKQ-AFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGH 220

Query: 207 IDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDH 266
               + +  + +F  MQ  G++P  VT+  +L ACA + DL+ GK +H Y    G  FD+
Sbjct: 221 AQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDY 280

Query: 267 HLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRL 326
               +L+ +Y +C + +  A  IF      +VV+W+ ++  Y Q  DL+++ ++F +M+ 
Sbjct: 281 ITEGSLLDLYVKCGD-IETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQA 339

Query: 327 ERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITS 386
             I PN  T   IL +CT    +  G  +H   +K G   D+ +   L++MYSK   +  
Sbjct: 340 TGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDK 399

Query: 387 SHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH 446
           + +I   +  RD VSWT++I+GY  H + EEAL  F EMQ+ GV PD I + +  SAC  
Sbjct: 400 ARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAG 459

Query: 447 AGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
              +++   +   V      A  I  +   V+L  + G+ E+A
Sbjct: 460 IKAMRQGLQIHARVYVS-GYAADISIWNTLVNLYARCGRSEEA 501


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  334 bits (856), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 190/563 (33%), Positives = 313/563 (55%), Gaps = 17/563 (3%)

Query: 30  LPSVIKACAYAQTHQHF--GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFD 87
           L SV+ AC+     +    G Q+H   L+ G + +  I N+L++MY K  K  S+  L  
Sbjct: 115 LVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLG 173

Query: 88  EMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELEL 147
               RD ++WN++++   QN   + +LE  REM L G       ++ ++  CS +  L  
Sbjct: 174 SFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRT 233

Query: 148 GRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCI 207
           G+++HA  + +GS + + FV +AL+D+Y  C   L   RVF+ M  R    W AMI+G  
Sbjct: 234 GKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYS 293

Query: 208 DSQNYDTGIDLFRAMQRE-GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDH 266
            +++    + LF  M+   G+     T+  V+ AC         +AIHG+    G D D 
Sbjct: 294 QNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDR 353

Query: 267 HLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR- 325
            +   LM MY    + +  A  IF + + +D+V W+++I GY  S    +A+ L  +M+ 
Sbjct: 354 FVQNTLMDMYSRLGK-IDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQN 412

Query: 326 LER----------IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           LER          ++PNS+TL+ IL SC   S L+ G  +H Y +K  L  DV++G+AL+
Sbjct: 413 LERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALV 472

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           +MY+KCG +  S ++F+++  ++ ++W  +I  YG HG G+EA+ L   M   GV+P+ +
Sbjct: 473 DMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEV 532

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           T +++ +AC+H+G+V E   +F  +  +  +  + +HYAC VDLLG++G+I++A ++++ 
Sbjct: 533 TFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNM 592

Query: 496 MPMK-PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLG 554
           MP         SSL+ A RIH  LE+ E+ A  LI+ EP  A++Y LL+ + S +G W  
Sbjct: 593 MPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDK 652

Query: 555 AEEVWRVMRAKGLSKSYGFSRIE 577
           A EV R M+ +G+ K  G S IE
Sbjct: 653 ATEVRRNMKEQGVRKEPGCSWIE 675



 Score =  228 bits (580), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 154/547 (28%), Positives = 274/547 (50%), Gaps = 24/547 (4%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPV-ISNSLISMYAKFSKPE 80
           G+  +    P+++KA A  Q  +  G Q+H    K G   D V ++N+L+++Y K     
Sbjct: 5   GIKPDNYAFPALLKAVADLQDME-LGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFG 63

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
           + Y++FD +  R+ +SWNS+I+       +  +LE FR M        +  L  +++ CS
Sbjct: 64  AVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACS 123

Query: 141 QIGELE---LGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197
            +   E   +G+Q+HA  +  G  EL+ F+   L+ +Y K      +  +      R+ V
Sbjct: 124 NLPMPEGLMMGKQVHAYGLRKG--ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLV 181

Query: 198 SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
           +W  ++S    ++     ++  R M  EGV+P   T++ VL AC+ L  LR GK +H YA
Sbjct: 182 TWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYA 241

Query: 258 YCCG-FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
              G  D +  + +AL+ MYC C + L   R +F+    + + +W+++I GYSQ+    E
Sbjct: 242 LKNGSLDENSFVGSALVDMYCNCKQVL-SGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKE 300

Query: 317 AMKLFSRMRLER-IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           A+ LF  M     +  NS T+  ++ +C R    S    +H +++K GL+ D  + N LM
Sbjct: 301 ALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLM 360

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ--------- 426
           +MYS+ G I  + +IF +M  RD V+W T+I+GY F  + E+AL L  +MQ         
Sbjct: 361 DMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKG 420

Query: 427 --ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSG 484
                ++P++IT++ IL +C     + + + +    +K   +A  +   +  VD+  K G
Sbjct: 421 ASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIK-NNLATDVAVGSALVDMYAKCG 479

Query: 485 KIEDACKVVSTMPMKPSTRILSSLVSACRIHGR-LEVAEMLAHQLIEAEPENAANYTLLS 543
            ++ + KV   +P K +    + ++ A  +HG   E  ++L   +++    N   +  + 
Sbjct: 480 CLQMSRKVFDQIPQK-NVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVF 538

Query: 544 MVCSESG 550
             CS SG
Sbjct: 539 AACSHSG 545


>gi|242092246|ref|XP_002436613.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
 gi|241914836|gb|EER87980.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
          Length = 683

 Score =  334 bits (856), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 191/576 (33%), Positives = 312/576 (54%), Gaps = 4/576 (0%)

Query: 4   KHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADP 63
           +H     LH   +   P     +  +L   +KAC  +  +  +G +LHC A+K G  AD 
Sbjct: 110 RHAEAVALHQDMRRRRPCPEAQDDFVLSLALKACIRSADYG-YGTRLHCDAVKVGG-ADG 167

Query: 64  VISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC 123
            + NSL+ MYAK    E A ++F+ +P R+ +SW S+++   QNGF    L +F +M   
Sbjct: 168 FVMNSLVDMYAKAGDLECARKVFERIPGRNVVSWTSMLSGCVQNGFAADGLLLFNKMRQD 227

Query: 124 GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
                   +A +I+ CS +  L  GR +H  VI  G    S F+S ALLD+Y KC     
Sbjct: 228 NVPPSEYTIATVITACSALIGLHQGRWMHGSVIKQGLMSNS-FISAALLDMYVKCGELED 286

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
           A  VF+++   + V WT MI G   + N    + LF   +   + P  VT+  VL A A+
Sbjct: 287 AQCVFDELSYIDLVLWTTMIVGYTQNGNPLDALRLFLDKKFANIVPNSVTIATVLSASAQ 346

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
           LRDL  G++IHG A   G      +  AL+ MY +C +A+  A  IF     KDVV W+S
Sbjct: 347 LRDLSLGRSIHGIAVKLGLVEYTVVVNALVDMYAKC-QAVSEANRIFGSISNKDVVAWNS 405

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           ++ GY+++   ++A+ LF +M L+   P++++++  LS+      L  G   H Y +K  
Sbjct: 406 MLSGYAENNMCNDALMLFKQMSLKGPSPDAISVVHALSASVCLGDLLIGKSFHGYAVKHA 465

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
              ++ +  AL+N+Y+KCG + S+ ++F+EM  R+ V+W  +I GYG  G    ++ LF 
Sbjct: 466 FLSNIYVSTALLNLYNKCGDLPSARRVFDEMNDRNSVTWCAMIGGYGMQGDSAGSIDLFG 525

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS 483
           EM + GV P+ +   +ILS C+H G+V  A+  F+++ +   I  +++HYAC VD+L ++
Sbjct: 526 EMLKDGVHPNDVAFTSILSTCSHTGMVTAAKRYFDSMAQHFNITPSMKHYACMVDVLARA 585

Query: 484 GKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLS 543
           G +E+A + +  MPM+  T +  + +  C +H RL+  E    +++   PE    Y L+S
Sbjct: 586 GNLEEALEFIDNMPMQADTSVWGAFLHGCELHSRLQFGEEAIKRMMVLHPERPDLYVLIS 645

Query: 544 MVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIENE 579
            + + +G W  ++ + R M+ KGL K  G+S I  E
Sbjct: 646 NLYTSNGMWEKSQAIRRWMQEKGLVKLPGYSSIGRE 681


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 186/531 (35%), Positives = 302/531 (56%), Gaps = 4/531 (0%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKF--SKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           ++H   +K+     P ++ +L+   A    +  + A  +F ++   D+ ++N +I  FT 
Sbjct: 42  EIHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAVSIFRQIDEPDSPAYNIMIRGFTL 101

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
                 ++ +F+EM+             I+ +CS++  L  G QIHAL++  G F    F
Sbjct: 102 KQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQIHALIMKCG-FGSHGF 160

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           V   L+ +Y+ C    +A RVF++M  RN  +W +M +G   S N++  + LF  M    
Sbjct: 161 VKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELD 220

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           ++   VTL  VL AC  L DL  G+ I+ Y    G   +  L  +L+ MY +C + +  A
Sbjct: 221 IRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQ-VDTA 279

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
           R +F++   +DVV WS++I GYSQ+    EA+ LF  M+   I+PN +T+++ILSSC   
Sbjct: 280 RRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVL 339

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
             L  G  VH +I K  +   V++G ALM+ Y+KCGS+ SS ++F +M  ++ +SWT LI
Sbjct: 340 GALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLI 399

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
            G   +G G++AL+ F  M E  VEP+ +T + +LSAC+HAGLV E   LF ++ ++  I
Sbjct: 400 QGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGI 459

Query: 467 ALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAH 526
              IEHY C VD+LG++G IE+A + +  MP++P+  I  +L+++C++H  +E+ E    
Sbjct: 460 EPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLK 519

Query: 527 QLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           QLI  EP ++ +Y LLS + +  G W  A +V   M+ KG+ K+ G S IE
Sbjct: 520 QLIILEPTHSGDYILLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCSLIE 570



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 123/439 (28%), Positives = 222/439 (50%), Gaps = 13/439 (2%)

Query: 1   MVSKHFYEQTLH---LYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKS 57
           M+     +Q+ H   L  +E+H + +  +    P ++K C+  Q     G Q+H   +K 
Sbjct: 95  MIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSE-GEQIHALIMKC 153

Query: 58  GSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMF 117
           G  +   + N+LI MYA   + E A ++FDEM  R+  +WNS+   +T++G +   +++F
Sbjct: 154 GFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLF 213

Query: 118 REMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSK 177
            EM           L  +++ C ++ +LELG  I+  V   G  + +  + T+L+D+Y+K
Sbjct: 214 HEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKG-LKGNPTLITSLVDMYAK 272

Query: 178 CHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIV 237
           C     A R+F+QM  R+ V+W+AMISG   +      +DLF  MQ+  + P  +T+  +
Sbjct: 273 CGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSI 332

Query: 238 LLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKD 297
           L +CA L  L  GK +H +           L  ALM  Y +C  ++  +  +F +  VK+
Sbjct: 333 LSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCG-SVESSIEVFGKMPVKN 391

Query: 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHC 357
           V+ W+ +I+G + +G   +A++ F  M  + +EPN VT + +LS+C+    +  G  +  
Sbjct: 392 VLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFV 451

Query: 358 YIMKA-GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFHG-- 413
            + +  G+   +     ++++  + G I  + Q    M  + + V W TL++    H   
Sbjct: 452 SMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVHKNV 511

Query: 414 -YGEEALQ--LFLEMQESG 429
             GEE+L+  + LE   SG
Sbjct: 512 EIGEESLKQLIILEPTHSG 530


>gi|225428280|ref|XP_002279627.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17210-like [Vitis vinifera]
          Length = 742

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 181/557 (32%), Positives = 314/557 (56%), Gaps = 7/557 (1%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           N + L   I AC      +  GL++H   ++SG    P + NSL+SMYA  +  E A +L
Sbjct: 149 NVSTLVLAIHACRSLGAMEE-GLKMHGYIIRSGFLDIPSVQNSLLSMYAD-NDMERAEEL 206

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV-LKAELLAGIISLCSQIGE 144
           FDEM  RD ISW+ +I  + Q G    +L++F EM     + L    +  ++  C+  G+
Sbjct: 207 FDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMTSNASIELDGITMVSVLKACANTGD 266

Query: 145 LELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMIS 204
           + +GR +H +VI  G  +  +FV  +++D+YSKC     A + F +M  RN VSW ++IS
Sbjct: 267 ISMGRSVHGVVICRG-LDYDLFVGNSIIDMYSKCDDHESAFKAFNEMPCRNTVSWNSIIS 325

Query: 205 GCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDF 264
           G + ++ +   + LF +M + G +   VTL  +L +C    D    K IH      G++ 
Sbjct: 326 GLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGYEL 385

Query: 265 DHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM 324
           +  +  +L+  Y +C + +  A  +F+R K KD V WS++I G++  G   EA+ LF  M
Sbjct: 386 NEFVINSLIDAYSKC-DLIELAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQEM 444

Query: 325 RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSI 384
              + +PN VT+L++L + +  + L      H   ++ GL  +V++G A+++MY+KCG I
Sbjct: 445 NQAQEKPNGVTILSLLEAFSVSADLKRSKWAHGIAIRRGLAAEVAVGTAILDMYAKCGEI 504

Query: 385 TSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
             S + F+++  ++ VSW  +I+  G +G   +AL L  EM+  G++P+ +T L++LSAC
Sbjct: 505 GLSRKAFDQIPEKNIVSWGAMIAACGMNGLARDALALLSEMKLHGLKPNVVTTLSVLSAC 564

Query: 445 NHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP--MKPST 502
           +H GLV+E  + F N++++  +   +EHY+C VD+L ++GK+  A  ++  MP  M+   
Sbjct: 565 SHGGLVEEGLSFFENMVQDHGVEPGLEHYSCMVDMLSRAGKLNSAMNLIEKMPERMRDGA 624

Query: 503 RILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVM 562
            +  +L+SACR  G   +    A +++E EP+++A Y L S + + SG W  A  +  ++
Sbjct: 625 GLWGALLSACRSSGNSRLGAGAAFRVLELEPQSSAGYFLASSMYAASGLWADAARMRWLV 684

Query: 563 RAKGLSKSYGFSRIENE 579
           +A+G+    G+S +  E
Sbjct: 685 KARGVRVVAGYSLVHVE 701



 Score =  209 bits (531), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 145/542 (26%), Positives = 267/542 (49%), Gaps = 15/542 (2%)

Query: 14  YKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMY 73
           Y Q        ++  ++ S++KAC+        G  +H + LK G D+     NS++  Y
Sbjct: 37  YHQMKKAGAQLTDPTLVHSILKACSSLPVRH--GKSIHASLLKQGFDSLTSTGNSVLDFY 94

Query: 74  AKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLA 133
            K    +SA  +FD M  RD++SWN +I+     G   + L  FR+  +  F      L 
Sbjct: 95  MKTGALDSALFVFDSMRSRDSVSWNIMIHGHLSRGASDKGLWWFRQARVIAFEPNVSTLV 154

Query: 134 GIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI 193
             I  C  +G +E G ++H  +I  G  ++   V  +LL +Y+  +    A  +F++M  
Sbjct: 155 LAIHACRSLGAMEEGLKMHGYIIRSGFLDIPS-VQNSLLSMYAD-NDMERAEELFDEMCE 212

Query: 194 RNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG-VKPTRVTLTIVLLACAELRDLRNGKA 252
           R+ +SW+ MI G + +      + LF  M     ++   +T+  VL ACA   D+  G++
Sbjct: 213 RDVISWSVMIGGYVQTGEAKMALQLFLEMTSNASIELDGITMVSVLKACANTGDISMGRS 272

Query: 253 IHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSG 312
           +HG   C G D+D  +  +++ MY +C +    A   F     ++ V W+SII G  ++ 
Sbjct: 273 VHGVVICRGLDYDLFVGNSIIDMYSKCDDH-ESAFKAFNEMPCRNTVSWNSIISGLVRTE 331

Query: 313 DLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN 372
             SEA+ LF  M       + VTL+ +L SC           +H  +++ G   +  + N
Sbjct: 332 KHSEALSLFYSMGKAGFRADEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGYELNEFVIN 391

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
           +L++ YSKC  I  + ++F+ +  +D VSW+ +I+G+   G  +EA+ LF EM ++  +P
Sbjct: 392 SLIDAYSKCDLIELAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQEMNQAQEKP 451

Query: 433 DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKV 492
           + +T+L++L A + +  +K ++   + +   + +A  +      +D+  K G+I  + K 
Sbjct: 452 NGVTILSLLEAFSVSADLKRSK-WAHGIAIRRGLAAEVAVGTAILDMYAKCGEIGLSRKA 510

Query: 493 VSTMPMKPSTRILS--SLVSACRIHG--RLEVAEMLAHQLIEAEPENAANYTLLSMVCSE 548
              +P K    I+S  ++++AC ++G  R  +A +   +L   +P      ++LS  CS 
Sbjct: 511 FDQIPEK---NIVSWGAMIAACGMNGLARDALALLSEMKLHGLKPNVVTTLSVLS-ACSH 566

Query: 549 SG 550
            G
Sbjct: 567 GG 568



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 79/151 (52%), Gaps = 2/151 (1%)

Query: 313 DLSEAMKLFSRMRLERIEPNSVTLL-AILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
           D  EA   + +M+    +    TL+ +IL +C+    + HG  +H  ++K G +   S G
Sbjct: 29  DSWEACSRYHQMKKAGAQLTDPTLVHSILKACSSLP-VRHGKSIHASLLKQGFDSLTSTG 87

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
           N++++ Y K G++ S+  +F+ M +RD VSW  +I G+   G  ++ L  F + +    E
Sbjct: 88  NSVLDFYMKTGALDSALFVFDSMRSRDSVSWNIMIHGHLSRGASDKGLWWFRQARVIAFE 147

Query: 432 PDAITVLAILSACNHAGLVKEAETLFNNVMK 462
           P+  T++  + AC   G ++E   +   +++
Sbjct: 148 PNVSTLVLAIHACRSLGAMEEGLKMHGYIIR 178


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 190/564 (33%), Positives = 314/564 (55%), Gaps = 17/564 (3%)

Query: 30  LPSVIKACAYAQTHQHF--GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFD 87
           L SV+ AC+     +    G Q+H   L+ G + +  I N+L++MY K  K  S+  L  
Sbjct: 202 LVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLG 260

Query: 88  EMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELEL 147
               RD ++WN++++   QN   + +LE  REM L G       ++ ++  CS +  L  
Sbjct: 261 SFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRT 320

Query: 148 GRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCI 207
           G+++HA  + +GS + + FV +AL+D+Y  C   L   RVF+ M  R    W AMI+G  
Sbjct: 321 GKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYS 380

Query: 208 DSQNYDTGIDLFRAMQRE-GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDH 266
            +++    + LF  M+   G+     T+  V+ AC         +AIHG+    G D D 
Sbjct: 381 QNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDR 440

Query: 267 HLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR- 325
            +   LM MY    + +  A  IF + + +D+V W+++I GY  S    +A+ L  +M+ 
Sbjct: 441 FVQNTLMDMYSRLGK-IDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQN 499

Query: 326 LER----------IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           LER          ++PNS+TL+ IL SC   S L+ G  +H Y +K  L  DV++G+AL+
Sbjct: 500 LERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALV 559

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           +MY+KCG +  S ++F+++  ++ ++W  +I  YG HG G+EA+ L   M   GV+P+ +
Sbjct: 560 DMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEV 619

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           T +++ +AC+H+G+V E   +F  +  +  +  + +HYAC VDLLG++G+I++A ++++ 
Sbjct: 620 TFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNM 679

Query: 496 MPMK-PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLG 554
           MP         SSL+ A RIH  LE+ E+ A  LI+ EP  A++Y LL+ + S +G W  
Sbjct: 680 MPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDK 739

Query: 555 AEEVWRVMRAKGLSKSYGFSRIEN 578
           A EV R M+ +G+ K  G S IE+
Sbjct: 740 ATEVRRNMKEQGVRKEPGCSWIEH 763



 Score =  228 bits (581), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 154/547 (28%), Positives = 274/547 (50%), Gaps = 24/547 (4%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPV-ISNSLISMYAKFSKPE 80
           G+  +    P+++KA A  Q  +  G Q+H    K G   D V ++N+L+++Y K     
Sbjct: 92  GIKPDNYAFPALLKAVADLQDME-LGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFG 150

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
           + Y++FD +  R+ +SWNS+I+       +  +LE FR M        +  L  +++ CS
Sbjct: 151 AVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACS 210

Query: 141 QIGELE---LGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197
            +   E   +G+Q+HA  +  G  EL+ F+   L+ +Y K      +  +      R+ V
Sbjct: 211 NLPMPEGLMMGKQVHAYGLRKG--ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLV 268

Query: 198 SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
           +W  ++S    ++     ++  R M  EGV+P   T++ VL AC+ L  LR GK +H YA
Sbjct: 269 TWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYA 328

Query: 258 YCCG-FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
              G  D +  + +AL+ MYC C + L   R +F+    + + +W+++I GYSQ+    E
Sbjct: 329 LKNGSLDENSFVGSALVDMYCNCKQVLS-GRRVFDGMFDRKIGLWNAMIAGYSQNEHDKE 387

Query: 317 AMKLFSRMRLER-IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           A+ LF  M     +  NS T+  ++ +C R    S    +H +++K GL+ D  + N LM
Sbjct: 388 ALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLM 447

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ--------- 426
           +MYS+ G I  + +IF +M  RD V+W T+I+GY F  + E+AL L  +MQ         
Sbjct: 448 DMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKG 507

Query: 427 --ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSG 484
                ++P++IT++ IL +C     + + + +    +K   +A  +   +  VD+  K G
Sbjct: 508 ASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIK-NNLATDVAVGSALVDMYAKCG 566

Query: 485 KIEDACKVVSTMPMKPSTRILSSLVSACRIHGR-LEVAEMLAHQLIEAEPENAANYTLLS 543
            ++ + KV   +P K +    + ++ A  +HG   E  ++L   +++    N   +  + 
Sbjct: 567 CLQMSRKVFDQIPQK-NVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVF 625

Query: 544 MVCSESG 550
             CS SG
Sbjct: 626 AACSHSG 632



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 110/407 (27%), Positives = 209/407 (51%), Gaps = 12/407 (2%)

Query: 97  WNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVI 156
           W  ++    ++     ++  + +M + G          ++   + + ++ELG+QIHA V 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 157 VDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGI 216
             G    SV V+  L++LY KC  +    +VF+++  RN+VSW ++IS     + ++  +
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 217 DLFRAMQREGVKPTRVTLTIVLLACAEL---RDLRNGKAIHGYAYCCGFDFDHHLSAALM 273
           + FR M  E V+P+  TL  V+ AC+ L     L  GK +H Y    G + +  +   L+
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLV 243

Query: 274 HMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNS 333
            MY +  + L  ++++      +D+V W++++    Q+  L EA++    M LE +EP+ 
Sbjct: 244 AMYGKLGK-LASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDE 302

Query: 334 VTLLAILSSCTRQSFLSHGLGVHCYIMKAG-LNFDVSIGNALMNMYSKCGSITSSHQIFN 392
            T+ ++L +C+    L  G  +H Y +K G L+ +  +G+AL++MY  C  + S  ++F+
Sbjct: 303 FTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFD 362

Query: 393 EMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES-GVEPDAITVLAILSACNHAGLVK 451
            M  R    W  +I+GY  + + +EAL LF+ M+ES G+  ++ T+  ++ AC  +G   
Sbjct: 363 GMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFS 422

Query: 452 EAETLFNNVMKEKKIALAIEHYA--CYVDLLGKSGKIEDACKVVSTM 496
             E +   V+K     L  + +     +D+  + GKI+ A ++   M
Sbjct: 423 RKEAIHGFVVKR---GLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKM 466


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 190/564 (33%), Positives = 314/564 (55%), Gaps = 17/564 (3%)

Query: 30  LPSVIKACAYAQTHQHF--GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFD 87
           L SV+ AC+     +    G Q+H   L+ G + +  I N+L++MY K  K  S+  L  
Sbjct: 202 LVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLG 260

Query: 88  EMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELEL 147
               RD ++WN++++   QN   + +LE  REM L G       ++ ++  CS +  L  
Sbjct: 261 SFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRT 320

Query: 148 GRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCI 207
           G+++HA  + +GS + + FV +AL+D+Y  C   L   RVF+ M  R    W AMI+G  
Sbjct: 321 GKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYS 380

Query: 208 DSQNYDTGIDLFRAMQRE-GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDH 266
            +++    + LF  M+   G+     T+  V+ AC         +AIHG+    G D D 
Sbjct: 381 QNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDR 440

Query: 267 HLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR- 325
            +   LM MY    + +  A  IF + + +D+V W+++I GY  S    +A+ L  +M+ 
Sbjct: 441 FVQNTLMDMYSRLGK-IDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQN 499

Query: 326 LER----------IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           LER          ++PNS+TL+ IL SC   S L+ G  +H Y +K  L  DV++G+AL+
Sbjct: 500 LERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALV 559

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           +MY+KCG +  S ++F+++  ++ ++W  +I  YG HG G+EA+ L   M   GV+P+ +
Sbjct: 560 DMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEV 619

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           T +++ +AC+H+G+V E   +F  +  +  +  + +HYAC VDLLG++G+I++A ++++ 
Sbjct: 620 TFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNM 679

Query: 496 MPMK-PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLG 554
           MP         SSL+ A RIH  LE+ E+ A  LI+ EP  A++Y LL+ + S +G W  
Sbjct: 680 MPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDK 739

Query: 555 AEEVWRVMRAKGLSKSYGFSRIEN 578
           A EV R M+ +G+ K  G S IE+
Sbjct: 740 ATEVRRNMKEQGVRKEPGCSWIEH 763



 Score =  228 bits (581), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 154/547 (28%), Positives = 274/547 (50%), Gaps = 24/547 (4%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPV-ISNSLISMYAKFSKPE 80
           G+  +    P+++KA A  Q  +  G Q+H    K G   D V ++N+L+++Y K     
Sbjct: 92  GIKPDNYAFPALLKAVADLQDME-LGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFG 150

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
           + Y++FD +  R+ +SWNS+I+       +  +LE FR M        +  L  +++ CS
Sbjct: 151 AVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACS 210

Query: 141 QIGELE---LGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197
            +   E   +G+Q+HA  +  G  EL+ F+   L+ +Y K      +  +      R+ V
Sbjct: 211 NLPMPEGLMMGKQVHAYGLRKG--ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLV 268

Query: 198 SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
           +W  ++S    ++     ++  R M  EGV+P   T++ VL AC+ L  LR GK +H YA
Sbjct: 269 TWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYA 328

Query: 258 YCCG-FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
              G  D +  + +AL+ MYC C + L   R +F+    + + +W+++I GYSQ+    E
Sbjct: 329 LKNGSLDENSFVGSALVDMYCNCKQVLS-GRRVFDGMFDRKIGLWNAMIAGYSQNEHDKE 387

Query: 317 AMKLFSRMRLER-IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           A+ LF  M     +  NS T+  ++ +C R    S    +H +++K GL+ D  + N LM
Sbjct: 388 ALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLM 447

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ--------- 426
           +MYS+ G I  + +IF +M  RD V+W T+I+GY F  + E+AL L  +MQ         
Sbjct: 448 DMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKG 507

Query: 427 --ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSG 484
                ++P++IT++ IL +C     + + + +    +K   +A  +   +  VD+  K G
Sbjct: 508 ASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIK-NNLATDVAVGSALVDMYAKCG 566

Query: 485 KIEDACKVVSTMPMKPSTRILSSLVSACRIHGR-LEVAEMLAHQLIEAEPENAANYTLLS 543
            ++ + KV   +P K +    + ++ A  +HG   E  ++L   +++    N   +  + 
Sbjct: 567 CLQMSRKVFDQIPQK-NVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVF 625

Query: 544 MVCSESG 550
             CS SG
Sbjct: 626 AACSHSG 632



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 110/407 (27%), Positives = 209/407 (51%), Gaps = 12/407 (2%)

Query: 97  WNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVI 156
           W  ++    ++     ++  + +M + G          ++   + + ++ELG+QIHA V 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 157 VDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGI 216
             G    SV V+  L++LY KC  +    +VF+++  RN+VSW ++IS     + ++  +
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 217 DLFRAMQREGVKPTRVTLTIVLLACAEL---RDLRNGKAIHGYAYCCGFDFDHHLSAALM 273
           + FR M  E V+P+  TL  V+ AC+ L     L  GK +H Y    G + +  +   L+
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLV 243

Query: 274 HMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNS 333
            MY +  + L  ++++      +D+V W++++    Q+  L EA++    M LE +EP+ 
Sbjct: 244 AMYGKLGK-LASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDE 302

Query: 334 VTLLAILSSCTRQSFLSHGLGVHCYIMKAG-LNFDVSIGNALMNMYSKCGSITSSHQIFN 392
            T+ ++L +C+    L  G  +H Y +K G L+ +  +G+AL++MY  C  + S  ++F+
Sbjct: 303 FTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFD 362

Query: 393 EMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES-GVEPDAITVLAILSACNHAGLVK 451
            M  R    W  +I+GY  + + +EAL LF+ M+ES G+  ++ T+  ++ AC  +G   
Sbjct: 363 GMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFS 422

Query: 452 EAETLFNNVMKEKKIALAIEHYA--CYVDLLGKSGKIEDACKVVSTM 496
             E +   V+K     L  + +     +D+  + GKI+ A ++   M
Sbjct: 423 RKEAIHGFVVKR---GLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKM 466


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 192/564 (34%), Positives = 324/564 (57%), Gaps = 9/564 (1%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGS-DADPVISNSLISMYAKFSKP- 79
           G Y N     +VI+AC+ A  +   G  ++   +K+G  +AD  +   LI M+ K S   
Sbjct: 123 GFYPNEYCFAAVIRACSNA-NYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDL 181

Query: 80  ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLC 139
            SAY++FD+MP R+ ++W  +I  F Q G    ++++F +M L G+V      + ++S C
Sbjct: 182 GSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC 241

Query: 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH---HWLIALRVFEQMVIRNE 196
           +++G L LG+Q+H+ VI  G   L V V  +L+D+Y+KC        + +VFEQM   N 
Sbjct: 242 TELGLLALGKQLHSRVIRLG-LALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNV 300

Query: 197 VSWTAMISGCIDSQNYDT-GIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
           +SWTA+I+  + S   D   I+LF  M    ++P   + + VL AC  L D   G+ ++ 
Sbjct: 301 MSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYS 360

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
           YA   G    + +  +L+ MY   +  +  AR  F+    K++V +++I+ GY+++    
Sbjct: 361 YAVKLGIASVNCVGNSLISMYAR-SGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSE 419

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           EA  LF+ +    I  ++ T  ++LS       +  G  +H  ++K G   +  I NAL+
Sbjct: 420 EAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALI 479

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           +MYS+CG+I ++ Q+FNEM  R+ +SWT++I+G+  HG+   AL++F +M E+G +P+ I
Sbjct: 480 SMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEI 539

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           T +A+LSAC+H G++ E +  FN++ KE  I   +EHYAC VDLLG+SG + +A + +++
Sbjct: 540 TYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINS 599

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGA 555
           MP+     +  +L+ ACR+HG  E+    A  ++E EP++ A Y LLS + + +G W   
Sbjct: 600 MPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDV 659

Query: 556 EEVWRVMRAKGLSKSYGFSRIENE 579
            ++ + M+ + L K  G S IE E
Sbjct: 660 VKIRKSMKERNLIKEAGCSWIEVE 683



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 159/557 (28%), Positives = 270/557 (48%), Gaps = 23/557 (4%)

Query: 5   HFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPV 64
           H    TL L  Q+  P  L + + +L S I+   +       G  +H   ++SG + D V
Sbjct: 8   HHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNF-----QLGKLVHRKLMQSGLELDSV 62

Query: 65  ISNSLISMYAKFSKPESAYQLFDEM-PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC 123
           + N+LIS+Y+K    E+A  +F+ M   RD +SW+++++CF  N    +++  F +M   
Sbjct: 63  VLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLEL 122

Query: 124 GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL- 182
           GF       A +I  CS      +G  I+  V+  G  E  V V   L+D++ K    L 
Sbjct: 123 GFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLG 182

Query: 183 IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
            A +VF++M  RN V+WT MI+           IDLF  M+  G  P R T + VL AC 
Sbjct: 183 SAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACT 242

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTE--ALHPARIIFERTKVKDVVI 300
           EL  L  GK +H      G   D  +  +L+ MY +C    ++  +R +FE+    +V+ 
Sbjct: 243 ELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMS 302

Query: 301 WSSIIRGYSQSGDLS-EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
           W++II  Y QSG+   EA++LF +M    I PN  +  ++L +C   S    G  V+ Y 
Sbjct: 303 WTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYA 362

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEAL 419
           +K G+     +GN+L++MY++ G +  + + F+ +  ++ VS+  ++ GY  +   EEA 
Sbjct: 363 VKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAF 422

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK-----EKKIALAIEHYA 474
            LF E+ ++G+   A T  ++LS     G + + E +   ++K      + I  A+    
Sbjct: 423 LLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNAL---- 478

Query: 475 CYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE-AEP 533
             + +  + G IE A +V + M  +      +S+++    HG    A  + H+++E    
Sbjct: 479 --ISMYSRCGNIEAAFQVFNEMEDRNVIS-WTSMITGFAKHGFATRALEMFHKMLETGTK 535

Query: 534 ENAANYTLLSMVCSESG 550
            N   Y  +   CS  G
Sbjct: 536 PNEITYVAVLSACSHVG 552



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 92/194 (47%), Gaps = 10/194 (5%)

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
           G L  A      M  +   P+  T   +L SC R      G  VH  +M++GL  D  + 
Sbjct: 5   GRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVL 64

Query: 372 NALMNMYSKCGSITSSHQIFNEMA-ARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV 430
           N L+++YSKCG   ++  IF  M   RD VSW+ ++S +  +    +A+  FL+M E G 
Sbjct: 65  NTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGF 124

Query: 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMK----EKKIALAIEHYACYVDLLGK-SGK 485
            P+     A++ AC++A      E ++  V+K    E  + +  E     +D+  K SG 
Sbjct: 125 YPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCE----LIDMFVKGSGD 180

Query: 486 IEDACKVVSTMPMK 499
           +  A KV   MP +
Sbjct: 181 LGSAYKVFDKMPER 194


>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 197/568 (34%), Positives = 313/568 (55%), Gaps = 6/568 (1%)

Query: 11  LHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLI 70
           L L+K E+  +G+  + +   SV ++CA   +    G QLH  ALK+    D VI  + +
Sbjct: 260 LELFK-EMQKAGVGVSQSTFASVFRSCA-GLSALRLGSQLHGHALKTDFGTDVVIGTATL 317

Query: 71  SMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE 130
            MY K +    A +LF+ +P  +  S+N+II  + ++   + +L MFR +   G  L   
Sbjct: 318 DMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEV 377

Query: 131 LLAGIISLCSQI-GELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
            L+G    C+ I G+LE G Q+H L +     + ++ V+ A+LD+Y KC   + A  VFE
Sbjct: 378 SLSGAFRACAVIKGDLE-GLQVHGLSM-KSLCQSNICVANAILDMYGKCGALVEACLVFE 435

Query: 190 QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
           +MV R+ VSW A+I+    + N +  + LF  M + G++P   T   VL ACA  + L  
Sbjct: 436 EMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNC 495

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
           G  IH          D  +  AL+ MY +C   +  A  + +R   + VV W++II G+S
Sbjct: 496 GMEIHNRIIKSRLGLDSFVGIALIDMYSKCG-MMEKAEKLHDRLAEQTVVSWNAIISGFS 554

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
                 EA K FS+M    ++P++ T   IL +C     +  G  +H  I+K  L  D  
Sbjct: 555 LQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAY 614

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
           I + L++MYSKCG++     IF +   RDFV+W  ++ GY  HG GEEAL++F  MQ   
Sbjct: 615 ISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLEN 674

Query: 430 VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
           V+P+  T LA+L AC H GLV++    F++++    +   +EHY+C VD++G+SG++  A
Sbjct: 675 VKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKA 734

Query: 490 CKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSES 549
            +++  MP +    I  +L+S C+IHG +EVAE  A+ +++ EPE++A Y LLS + + +
Sbjct: 735 LELIEGMPFEADAVIWRTLLSICKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANA 794

Query: 550 GNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           G W    ++ ++MR  GL K  G S IE
Sbjct: 795 GMWNEVTKLRKMMRFNGLKKEPGCSWIE 822



 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 148/511 (28%), Positives = 269/511 (52%), Gaps = 14/511 (2%)

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D V  N+++  YA       A +LFD MP RD +SWNS+I+ +  NG + + +++F +M 
Sbjct: 107 DTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMG 166

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
             G V      A ++  CS + +   G QIH L +  G F+  V   +ALLD+Y+KC   
Sbjct: 167 RMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMG-FDCDVVTGSALLDMYAKCKKL 225

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             +++ F  M  +N VSW+A+I+GC+ + +   G++LF+ MQ+ GV  ++ T   V  +C
Sbjct: 226 DCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSC 285

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A L  LR G  +HG+A    F  D  +  A + MY +C   L  A+ +F      ++  +
Sbjct: 286 AGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNN-LSDAQKLFNSLPNHNLQSY 344

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           ++II GY++S    EA+ +F  ++   +  + V+L     +C        GL VH   MK
Sbjct: 345 NAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMK 404

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
           +    ++ + NA+++MY KCG++  +  +F EM +RD VSW  +I+ +  +G  E+ L L
Sbjct: 405 SLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSL 464

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYA--CYVDL 479
           F+ M +SG+EPD  T  ++L AC     +     + N ++K +   L ++ +     +D+
Sbjct: 465 FVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSR---LGLDSFVGIALIDM 521

Query: 480 LGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE--AEPENAA 537
             K G +E A K+   +  + +    ++++S   +  + E A+    +++E   +P+N  
Sbjct: 522 YSKCGMMEKAEKLHDRLA-EQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFT 580

Query: 538 NYTLL----SMVCSESGNWLGAEEVWRVMRA 564
             T+L    ++V  E G  + A+ + + +++
Sbjct: 581 YATILDTCANLVTVELGKQIHAQIIKKELQS 611



 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 152/521 (29%), Positives = 262/521 (50%), Gaps = 10/521 (1%)

Query: 33  VIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYR 92
           V+K+C+  + H   G+Q+H  A+K G D D V  ++L+ MYAK  K + + Q F  MP +
Sbjct: 180 VLKSCSSLEDHGG-GIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEK 238

Query: 93  DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIH 152
           + +SW++II    QN      LE+F+EM   G  +     A +   C+ +  L LG Q+H
Sbjct: 239 NWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLH 298

Query: 153 ALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNY 212
              +    F   V + TA LD+Y KC++   A ++F  +   N  S+ A+I G   S   
Sbjct: 299 GHAL-KTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKG 357

Query: 213 DTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAAL 272
              + +FR +Q+ G+    V+L+    ACA ++    G  +HG +       +  ++ A+
Sbjct: 358 IEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAI 417

Query: 273 MHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPN 332
           + MY +C  AL  A ++FE    +D V W++II  + Q+G+  + + LF  M    +EP+
Sbjct: 418 LDMYGKCG-ALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPD 476

Query: 333 SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFN 392
             T  ++L +C     L+ G+ +H  I+K+ L  D  +G AL++MYSKCG +  + ++ +
Sbjct: 477 EFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHD 536

Query: 393 EMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKE 452
            +A +  VSW  +ISG+      EEA + F +M E GV+PD  T   IL  C +   V+ 
Sbjct: 537 RLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVEL 596

Query: 453 AETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVS 510
            + +   ++K++   L  + Y  +  VD+  K G ++D   +    P +      +++V 
Sbjct: 597 GKQIHAQIIKKE---LQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFV-TWNAMVC 652

Query: 511 ACRIHGRLEVA-EMLAHQLIEAEPENAANYTLLSMVCSESG 550
               HG  E A ++  +  +E    N A +  +   C   G
Sbjct: 653 GYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMG 693



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 120/401 (29%), Positives = 188/401 (46%), Gaps = 36/401 (8%)

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
           K +  + I   CS    L  G+Q HA +I+   F+ +VFV+  L+ +Y KC     A +V
Sbjct: 41  KKKTFSHIFQECSDRKALCPGKQAHARMILT-EFKPTVFVTNCLIQMYIKCSDLEFAFKV 99

Query: 188 FEQMVIRNEVSWTAM-------------------------------ISGCIDSQNYDTGI 216
           F+ M  R+ VSW AM                               ISG + + ++   I
Sbjct: 100 FDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVI 159

Query: 217 DLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMY 276
           D+F  M R G    R T  +VL +C+ L D   G  IHG A   GFD D    +AL+ MY
Sbjct: 160 DVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMY 219

Query: 277 CECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTL 336
            +C + L  +   F     K+ V WS+II G  Q+ DL   ++LF  M+   +  +  T 
Sbjct: 220 AKCKK-LDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTF 278

Query: 337 LAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA 396
            ++  SC   S L  G  +H + +K     DV IG A ++MY KC +++ + ++FN +  
Sbjct: 279 ASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPN 338

Query: 397 RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETL 456
            +  S+  +I GY     G EAL +F  +Q+SG+  D +++     AC  A +  + E L
Sbjct: 339 HNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRAC--AVIKGDLEGL 396

Query: 457 FNNVMKEKKIALA-IEHYACYVDLLGKSGKIEDACKVVSTM 496
             + +  K +  + I      +D+ GK G + +AC V   M
Sbjct: 397 QVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEM 437



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 87/224 (38%), Gaps = 43/224 (19%)

Query: 335 TLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC------------- 381
           T   I   C+ +  L  G   H  ++       V + N L+ MY KC             
Sbjct: 44  TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGM 103

Query: 382 ------------------GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
                             G I  + ++F+ M  RD VSW +LISGY  +G   + + +FL
Sbjct: 104 PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFL 163

Query: 424 EMQESGVEPDAITVLAILSAC----NHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479
           +M   G   D  T   +L +C    +H G ++      + +  +      +   +  +D+
Sbjct: 164 QMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQ-----IHGLAVKMGFDCDVVTGSALLDM 218

Query: 480 LGKSGKIEDACKVVSTMPMK---PSTRILSSLVSACRIHGRLEV 520
             K  K++ + +   +MP K     + I++  V    + G LE+
Sbjct: 219 YAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLEL 262


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 192/564 (34%), Positives = 324/564 (57%), Gaps = 9/564 (1%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGS-DADPVISNSLISMYAKFSKP- 79
           G Y N     +VI+AC+ A  +   G  ++   +K+G  +AD  +   LI M+ K S   
Sbjct: 141 GFYPNEYCFAAVIRACSNA-NYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDL 199

Query: 80  ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLC 139
            SAY++FD+MP R+ ++W  +I  F Q G    ++++F +M L G+V      + ++S C
Sbjct: 200 GSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC 259

Query: 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH---HWLIALRVFEQMVIRNE 196
           +++G L LG+Q+H+ VI  G   L V V  +L+D+Y+KC        + +VFEQM   N 
Sbjct: 260 TELGLLALGKQLHSRVIRLG-LALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNV 318

Query: 197 VSWTAMISGCIDSQNYDT-GIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
           +SWTA+I+  + S   D   I+LF  M    ++P   + + VL AC  L D   G+ ++ 
Sbjct: 319 MSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYS 378

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
           YA   G    + +  +L+ MY   +  +  AR  F+    K++V +++I+ GY+++    
Sbjct: 379 YAVKLGIASVNCVGNSLISMYAR-SGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSE 437

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           EA  LF+ +    I  ++ T  ++LS       +  G  +H  ++K G   +  I NAL+
Sbjct: 438 EAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALI 497

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           +MYS+CG+I ++ Q+FNEM  R+ +SWT++I+G+  HG+   AL++F +M E+G +P+ I
Sbjct: 498 SMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEI 557

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           T +A+LSAC+H G++ E +  FN++ KE  I   +EHYAC VDLLG+SG + +A + +++
Sbjct: 558 TYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINS 617

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGA 555
           MP+     +  +L+ ACR+HG  E+    A  ++E EP++ A Y LLS + + +G W   
Sbjct: 618 MPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDV 677

Query: 556 EEVWRVMRAKGLSKSYGFSRIENE 579
            ++ + M+ + L K  G S IE E
Sbjct: 678 VKIRKSMKERNLIKEAGCSWIEVE 701



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 159/557 (28%), Positives = 271/557 (48%), Gaps = 23/557 (4%)

Query: 5   HFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPV 64
           H    TL L  Q+  P  L + + +L S I+   +       G  +H   ++SG + D V
Sbjct: 26  HHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNF-----QLGKLVHRKLMQSGLELDSV 80

Query: 65  ISNSLISMYAKFSKPESAYQLFDEM-PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC 123
           + N+LIS+Y+K    E+A  +F+ M   RD +SW+++++CF  N    +++  F +M   
Sbjct: 81  VLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLEL 140

Query: 124 GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL- 182
           GF       A +I  CS      +G  I+  V+  G  E  V V   L+D++ K    L 
Sbjct: 141 GFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLG 200

Query: 183 IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
            A +VF++M  RN V+WT MI+           IDLF  M+  G  P R T + VL AC 
Sbjct: 201 SAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACT 260

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTE--ALHPARIIFERTKVKDVVI 300
           EL  L  GK +H      G   D  +  +L+ MY +C    ++  +R +FE+    +V+ 
Sbjct: 261 ELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMS 320

Query: 301 WSSIIRGYSQSGDLS-EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
           W++II  Y QSG+   EA++LF +M    I PN  +  ++L +C   S    G  V+ Y 
Sbjct: 321 WTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYA 380

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEAL 419
           +K G+     +GN+L++MY++ G +  + + F+ +  ++ VS+  ++ GY  +   EEA 
Sbjct: 381 VKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAF 440

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK-----EKKIALAIEHYA 474
            LF E+ ++G+   A T  ++LS     G + + E +   ++K      + I  A+    
Sbjct: 441 LLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNAL---- 496

Query: 475 CYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE-AEP 533
             + +  + G IE A +V + M  + +    +S+++    HG    A  + H+++E    
Sbjct: 497 --ISMYSRCGNIEAAFQVFNEMEDR-NVISWTSMITGFAKHGFATRALEMFHKMLETGTK 553

Query: 534 ENAANYTLLSMVCSESG 550
            N   Y  +   CS  G
Sbjct: 554 PNEITYVAVLSACSHVG 570



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 92/194 (47%), Gaps = 10/194 (5%)

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
           G L  A      M  +   P+  T   +L SC R      G  VH  +M++GL  D  + 
Sbjct: 23  GRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVL 82

Query: 372 NALMNMYSKCGSITSSHQIFNEMA-ARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV 430
           N L+++YSKCG   ++  IF  M   RD VSW+ ++S +  +    +A+  FL+M E G 
Sbjct: 83  NTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGF 142

Query: 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMK----EKKIALAIEHYACYVDLLGK-SGK 485
            P+     A++ AC++A      E ++  V+K    E  + +  E     +D+  K SG 
Sbjct: 143 YPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCE----LIDMFVKGSGD 198

Query: 486 IEDACKVVSTMPMK 499
           +  A KV   MP +
Sbjct: 199 LGSAYKVFDKMPER 212


>gi|297802780|ref|XP_002869274.1| hypothetical protein ARALYDRAFT_491483 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315110|gb|EFH45533.1| hypothetical protein ARALYDRAFT_491483 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 686

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 185/536 (34%), Positives = 305/536 (56%), Gaps = 11/536 (2%)

Query: 45  HFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCF 104
             GLQL  T +KSG ++D V+ NS I+MY++      A ++FDEMP++D ISWNS+++  
Sbjct: 116 RLGLQLQSTVVKSGLESDLVVGNSFITMYSRSGSFRGARRVFDEMPFKDMISWNSLLSGL 175

Query: 105 TQNG-FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFEL 163
           +Q G F   ++ +FR+M   G  L       +I+ C    +L+L RQIH L I  G +E 
Sbjct: 176 SQEGTFGFEAVLIFRDMMREGVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRG-YES 234

Query: 164 SVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQ 223
            + V   L+  YSKC        VF QM  RN VSWT MIS      N D  + +F  M+
Sbjct: 235 LLEVGNILMSRYSKCGVLEAVKSVFYQMSERNVVSWTTMIS-----SNRDDAVSIFLNMR 289

Query: 224 REGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEAL 283
            +GV P  VT   +L A      ++ G  IHG     GF  +  +  + + MY +  EAL
Sbjct: 290 LDGVYPNEVTFVGLLNAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITMYAKF-EAL 348

Query: 284 HPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC 343
             A+  F+    ++++ W+++I G++Q+G   EA+K+F     E + PN  T  ++L++ 
Sbjct: 349 EDAKKAFDDITFREIISWNAMISGFAQNGFSHEALKMFLSATAETM-PNEYTFGSVLNAI 407

Query: 344 TRQSFLS--HGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS 401
                +S  HG   H +++K GLN    + +AL++MY+K G+I  S ++FNEM+ R+   
Sbjct: 408 AFAEDISVKHGQRCHAHLLKLGLNSCPVVSSALLDMYAKRGNINESEKVFNEMSQRNQFV 467

Query: 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVM 461
           WT++IS Y  HG     + LF EM +  V PD +T L++L+ACN  G+V +   + N ++
Sbjct: 468 WTSIISAYSSHGDFNSVMNLFHEMIKENVAPDLVTFLSVLTACNRKGMVDKGHEILNMMI 527

Query: 462 KEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA 521
           ++  +  + EHY+C VD+LG++G++++A +++S +P  P   +L S++ +CR+HG +++ 
Sbjct: 528 EDYNLEPSHEHYSCMVDMLGRAGRLKEAEELMSEVPGGPGESMLQSMLGSCRLHGNVKMG 587

Query: 522 EMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
             +A   +E +PE + +Y  +  + +E   W  A E+ + MR K +SK  GFS I+
Sbjct: 588 AKVAELAMEMKPELSGSYVQMYNIYAEKEQWDKAAEIRKAMRKKNVSKEAGFSWID 643



 Score =  195 bits (495), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 142/525 (27%), Positives = 261/525 (49%), Gaps = 27/525 (5%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G Q+H  +   G  +   +SN+++ MY K  + ++A  +F+ +   D +SWN+I++ F  
Sbjct: 20  GCQIHGFSTTCGFTSFVCVSNAVMGMYRKAGRFDNALYIFENLVDPDVVSWNTILSGFDD 79

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           N     +L     M   G V  A   +  +S C       LG Q+ + V+  G  E  + 
Sbjct: 80  NQI---ALNFVVRMKSAGVVFDAFTYSTALSFCVGSEGFRLGLQLQSTVVKSG-LESDLV 135

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGID---LFRAMQ 223
           V  + + +YS+   +  A RVF++M  ++ +SW +++SG   SQ    G +   +FR M 
Sbjct: 136 VGNSFITMYSRSGSFRGARRVFDEMPFKDMISWNSLLSGL--SQEGTFGFEAVLIFRDMM 193

Query: 224 REGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEAL 283
           REGV+   V+ T V+  C    DL+  + IHG     G++    +   LM  Y +C   L
Sbjct: 194 REGVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRGYESLLEVGNILMSRYSKCG-VL 252

Query: 284 HPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC 343
              + +F +   ++VV W+++I     S +  +A+ +F  MRL+ + PN VT + +L++ 
Sbjct: 253 EAVKSVFYQMSERNVVSWTTMI-----SSNRDDAVSIFLNMRLDGVYPNEVTFVGLLNAV 307

Query: 344 TRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWT 403
                +  GL +H   +K G   + S+GN+ + MY+K  ++  + + F+++  R+ +SW 
Sbjct: 308 KCNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITMYAKFEALEDAKKAFDDITFREIISWN 367

Query: 404 TLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG--LVKEAETLFNNVM 461
            +ISG+  +G+  EAL++FL      + P+  T  ++L+A   A    VK  +    +++
Sbjct: 368 AMISGFAQNGFSHEALKMFLSATAETM-PNEYTFGSVLNAIAFAEDISVKHGQRCHAHLL 426

Query: 462 KEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA 521
           K    +  +   A  +D+  K G I ++ KV + M  + +  + +S++SA   HG     
Sbjct: 427 KLGLNSCPVVSSA-LLDMYAKRGNINESEKVFNEMSQR-NQFVWTSIISAYSSHGDFNSV 484

Query: 522 EMLAHQLIEAEPENAAN--YTLLSMV--CSESGNWLGAEEVWRVM 562
             L H++I+   EN A    T LS++  C+  G      E+  +M
Sbjct: 485 MNLFHEMIK---ENVAPDLVTFLSVLTACNRKGMVDKGHEILNMM 526



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 119/226 (52%), Gaps = 7/226 (3%)

Query: 232 VTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFE 291
           VTL + L AC    DL+ G  IHG++  CGF     +S A+M MY +       A  IFE
Sbjct: 4   VTLCLALKACR--GDLKRGCQIHGFSTTCGFTSFVCVSNAVMGMYRKAGR-FDNALYIFE 60

Query: 292 RTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSH 351
                DVV W++I+ G+    D   A+    RM+   +  ++ T    LS C        
Sbjct: 61  NLVDPDVVSWNTILSGFD---DNQIALNFVVRMKSAGVVFDAFTYSTALSFCVGSEGFRL 117

Query: 352 GLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGF 411
           GL +   ++K+GL  D+ +GN+ + MYS+ GS   + ++F+EM  +D +SW +L+SG   
Sbjct: 118 GLQLQSTVVKSGLESDLVVGNSFITMYSRSGSFRGARRVFDEMPFKDMISWNSLLSGLSQ 177

Query: 412 HG-YGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETL 456
            G +G EA+ +F +M   GVE D ++  ++++ C H   +K A  +
Sbjct: 178 EGTFGFEAVLIFRDMMREGVELDHVSFTSVITTCCHETDLKLARQI 223



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 159/339 (46%), Gaps = 11/339 (3%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           +++   G+  +     SVI  C + +T      Q+H   +K G ++   + N L+S Y+K
Sbjct: 190 RDMMREGVELDHVSFTSVITTCCH-ETDLKLARQIHGLCIKRGYESLLEVGNILMSRYSK 248

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
               E+   +F +M  R+ +SW ++I+    +     ++ +F  M L G         G+
Sbjct: 249 CGVLEAVKSVFYQMSERNVVSWTTMISSNRDD-----AVSIFLNMRLDGVYPNEVTFVGL 303

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           ++      +++ G +IH L I  G F     V  + + +Y+K      A + F+ +  R 
Sbjct: 304 LNAVKCNEQIKEGLKIHGLCIKTG-FVSEPSVGNSFITMYAKFEALEDAKKAFDDITFRE 362

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL--RNGKAI 253
            +SW AMISG   +      + +F +   E + P   T   VL A A   D+  ++G+  
Sbjct: 363 IISWNAMISGFAQNGFSHEALKMFLSATAETM-PNEYTFGSVLNAIAFAEDISVKHGQRC 421

Query: 254 HGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGD 313
           H +    G +    +S+AL+ MY +    ++ +  +F     ++  +W+SII  YS  GD
Sbjct: 422 HAHLLKLGLNSCPVVSSALLDMYAK-RGNINESEKVFNEMSQRNQFVWTSIISAYSSHGD 480

Query: 314 LSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHG 352
            +  M LF  M  E + P+ VT L++L++C R+  +  G
Sbjct: 481 FNSVMNLFHEMIKENVAPDLVTFLSVLTACNRKGMVDKG 519


>gi|297744484|emb|CBI37746.3| unnamed protein product [Vitis vinifera]
          Length = 2090

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 181/557 (32%), Positives = 314/557 (56%), Gaps = 7/557 (1%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           N + L   I AC      +  GL++H   ++SG    P + NSL+SMYA  +  E A +L
Sbjct: 135 NVSTLVLAIHACRSLGAMEE-GLKMHGYIIRSGFLDIPSVQNSLLSMYAD-NDMERAEEL 192

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV-LKAELLAGIISLCSQIGE 144
           FDEM  RD ISW+ +I  + Q G    +L++F EM     + L    +  ++  C+  G+
Sbjct: 193 FDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMTSNASIELDGITMVSVLKACANTGD 252

Query: 145 LELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMIS 204
           + +GR +H +VI  G  +  +FV  +++D+YSKC     A + F +M  RN VSW ++IS
Sbjct: 253 ISMGRSVHGVVICRG-LDYDLFVGNSIIDMYSKCDDHESAFKAFNEMPCRNTVSWNSIIS 311

Query: 205 GCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDF 264
           G + ++ +   + LF +M + G +   VTL  +L +C    D    K IH      G++ 
Sbjct: 312 GLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGYEL 371

Query: 265 DHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM 324
           +  +  +L+  Y +C + +  A  +F+R K KD V WS++I G++  G   EA+ LF  M
Sbjct: 372 NEFVINSLIDAYSKC-DLIELAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQEM 430

Query: 325 RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSI 384
              + +PN VT+L++L + +  + L      H   ++ GL  +V++G A+++MY+KCG I
Sbjct: 431 NQAQEKPNGVTILSLLEAFSVSADLKRSKWAHGIAIRRGLAAEVAVGTAILDMYAKCGEI 490

Query: 385 TSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
             S + F+++  ++ VSW  +I+  G +G   +AL L  EM+  G++P+ +T L++LSAC
Sbjct: 491 GLSRKAFDQIPEKNIVSWGAMIAACGMNGLARDALALLSEMKLHGLKPNVVTTLSVLSAC 550

Query: 445 NHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP--MKPST 502
           +H GLV+E  + F N++++  +   +EHY+C VD+L ++GK+  A  ++  MP  M+   
Sbjct: 551 SHGGLVEEGLSFFENMVQDHGVEPGLEHYSCMVDMLSRAGKLNSAMNLIEKMPERMRDGA 610

Query: 503 RILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVM 562
            +  +L+SACR  G   +    A +++E EP+++A Y L S + + SG W  A  +  ++
Sbjct: 611 GLWGALLSACRSSGNSRLGAGAAFRVLELEPQSSAGYFLASSMYAASGLWADAARMRWLV 670

Query: 563 RAKGLSKSYGFSRIENE 579
           +A+G+    G+S +  E
Sbjct: 671 KARGVRVVAGYSLVHVE 687



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 137/504 (27%), Positives = 252/504 (50%), Gaps = 14/504 (2%)

Query: 52  CTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYV 111
           C++L  G D+     NS++  Y K    +SA  +FD M  RD++SWN +I+     G   
Sbjct: 60  CSSLP-GFDSLTSTGNSVLDFYMKTGALDSALFVFDSMRSRDSVSWNIMIHGHLSRGASD 118

Query: 112 RSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTAL 171
           + L  FR+  +  F      L   I  C  +G +E G ++H  +I  G  ++   V  +L
Sbjct: 119 KGLWWFRQARVIAFEPNVSTLVLAIHACRSLGAMEEGLKMHGYIIRSGFLDIPS-VQNSL 177

Query: 172 LDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG-VKPT 230
           L +Y+  +    A  +F++M  R+ +SW+ MI G + +      + LF  M     ++  
Sbjct: 178 LSMYAD-NDMERAEELFDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMTSNASIELD 236

Query: 231 RVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIF 290
            +T+  VL ACA   D+  G+++HG   C G D+D  +  +++ MY +C +    A   F
Sbjct: 237 GITMVSVLKACANTGDISMGRSVHGVVICRGLDYDLFVGNSIIDMYSKCDDH-ESAFKAF 295

Query: 291 ERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLS 350
                ++ V W+SII G  ++   SEA+ LF  M       + VTL+ +L SC       
Sbjct: 296 NEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQSCKYFVDPF 355

Query: 351 HGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYG 410
               +H  +++ G   +  + N+L++ YSKC  I  + ++F+ +  +D VSW+ +I+G+ 
Sbjct: 356 QCKFIHSIVIRWGYELNEFVINSLIDAYSKCDLIELAWKLFDRLKTKDTVSWSAMIAGFN 415

Query: 411 FHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAI 470
             G  +EA+ LF EM ++  +P+ +T+L++L A + +  +K ++   + +   + +A  +
Sbjct: 416 HCGKPDEAIALFQEMNQAQEKPNGVTILSLLEAFSVSADLKRSKWA-HGIAIRRGLAAEV 474

Query: 471 EHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILS--SLVSACRIHG--RLEVAEMLAH 526
                 +D+  K G+I  + K    +P K    I+S  ++++AC ++G  R  +A +   
Sbjct: 475 AVGTAILDMYAKCGEIGLSRKAFDQIPEK---NIVSWGAMIAACGMNGLARDALALLSEM 531

Query: 527 QLIEAEPENAANYTLLSMVCSESG 550
           +L   +P      ++LS  CS  G
Sbjct: 532 KLHGLKPNVVTTLSVLS-ACSHGG 554



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 154/319 (48%), Gaps = 25/319 (7%)

Query: 198 SWTAMISGCIDSQNYDT--GIDLFRAMQREGVKPTRVTLT-IVLLACAELRDLRNGKAIH 254
           +W   I    + + +D+      +  M++ G + T  TL   +L AC+ L          
Sbjct: 14  NWNLGIKDSTNRKWWDSWEACSRYHQMKKAGAQLTDPTLVHSILKACSSLP--------- 64

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
                 GFD       +++  Y + T AL  A  +F+  + +D V W+ +I G+   G  
Sbjct: 65  ------GFDSLTSTGNSVLDFYMK-TGALDSALFVFDSMRSRDSVSWNIMIHGHLSRGAS 117

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
            + +  F + R+   EPN  TL+  + +C     +  GL +H YI+++G     S+ N+L
Sbjct: 118 DKGLWWFRQARVIAFEPNVSTLVLAIHACRSLGAMEEGLKMHGYIIRSGFLDIPSVQNSL 177

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM-QESGVEPD 433
           ++MY+    +  + ++F+EM  RD +SW+ +I GY   G  + ALQLFLEM   + +E D
Sbjct: 178 LSMYAD-NDMERAEELFDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMTSNASIELD 236

Query: 434 AITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVV 493
            IT++++L AC + G +    ++ + V+  + +   +      +D+  K    E A K  
Sbjct: 237 GITMVSVLKACANTGDISMGRSV-HGVVICRGLDYDLFVGNSIIDMYSKCDDHESAFKAF 295

Query: 494 STMPMKPS---TRILSSLV 509
           + MP + +     I+S LV
Sbjct: 296 NEMPCRNTVSWNSIISGLV 314


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 178/562 (31%), Positives = 313/562 (55%), Gaps = 3/562 (0%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           Q +   G   +     S++ AC   +T QH G  +  +  ++  + D  +  +LI+MYA+
Sbjct: 250 QRMQQEGERCDRVTFLSILDACVNPETLQH-GKHVRESISETSFELDLFVGTALITMYAR 308

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
              PE A Q+F  M   + I+W++II  F  +G    +L  FR M   G +        +
Sbjct: 309 CRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISL 368

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           ++  +    LE   +IH L+I +   + +  +  AL+++Y +C     A  VF+Q+ + N
Sbjct: 369 LNGFTTPSGLEELSRIH-LLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPN 427

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
            +SW +MI   +  + +D  + LFR MQ++G++P RV    +L AC      R  K +H 
Sbjct: 428 LISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTIGSHGRTRKLVHQ 487

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
                G      +  +L++MY +  E L  A +I +    + +  W+ +I GY+  G   
Sbjct: 488 CVEESGLGGSPLVQTSLVNMYAKAGE-LDVAEVILQEMDEQQITAWNVLINGYALHGRSR 546

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           EA++ + +++LE I  + VT +++L++CT  + L+ G  +H   ++ GL+ DV + NAL 
Sbjct: 547 EALEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALT 606

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           NMYSKCGS+ ++ +IF+ M  R  VSW  ++  Y  HG  EE L+L  +M++ GV+ + I
Sbjct: 607 NMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGI 666

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           T +++LS+C+HAGL+ E    F+++  ++ I +  EHY C VDLLG++GK+++A K +S 
Sbjct: 667 TFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISK 726

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGA 555
           MP++P     +SL+ ACR+   L+  ++ A +L+E +P N++   +LS + SE G+W  A
Sbjct: 727 MPLEPGIVTWASLLGACRVQKDLDRGKLAAGKLLELDPGNSSASVVLSNIYSERGDWKNA 786

Query: 556 EEVWRVMRAKGLSKSYGFSRIE 577
            ++ R M ++ + K  G S I+
Sbjct: 787 AKLRRAMASRRVKKVPGISSIQ 808



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 147/545 (26%), Positives = 272/545 (49%), Gaps = 8/545 (1%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           +++ L L+   L   G+  N   L +V+ +C   +  +  G+ +H  +L+ G   + +++
Sbjct: 39  FQEALALFHAML-LEGVAPNAITLVAVLNSCGSFRELRD-GILVHALSLERGFFQNTLVA 96

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG-FYVRSLEMFREMYLCGF 125
            +L++MY K      A  +F+EM  ++ ++WN+++  ++  G  +  ++E+F  M L G 
Sbjct: 97  TALLNMYGKCGTLLDAQSVFEEMAEKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGV 156

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
                    +++       L  G+ IH+ V  +    L VFV+TAL++ Y+KC     A 
Sbjct: 157 KANVITFLNVLNSVVDPDALRKGKFIHSCV-RESEHSLDVFVNTALVNTYTKCGSLTDAR 215

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
           +VF+ M  R+  +W +MIS    S+       +F+ MQ+EG +  RVT   +L AC    
Sbjct: 216 KVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPE 275

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
            L++GK +        F+ D  +  AL+ MY  C      A+ +F R K  +++ WS+II
Sbjct: 276 TLQHGKHVRESISETSFELDLFVGTALITMYARCRSPEDAAQ-VFGRMKQTNLITWSAII 334

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
             ++  G   EA++ F  M+ E I PN VT +++L+  T  S L     +H  I + GL+
Sbjct: 335 TAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLD 394

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
              ++ NAL+N+Y +C S   +  +F+++   + +SW ++I  Y      ++ALQLF  M
Sbjct: 395 DTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTM 454

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
           Q+ G++PD +  + IL AC   G       L +  ++E  +  +       V++  K+G+
Sbjct: 455 QQQGIQPDRVNFMTILGACT-IGSHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGE 513

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGR-LEVAEMLAHQLIEAEPENAANYTLLSM 544
           ++ A  ++  M  +  T   + L++   +HGR  E  E      +EA P +   +  +  
Sbjct: 514 LDVAEVILQEMDEQQIT-AWNVLINGYALHGRSREALEAYQKLQLEAIPVDKVTFISVLN 572

Query: 545 VCSES 549
            C+ S
Sbjct: 573 ACTSS 577



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 120/377 (31%), Positives = 194/377 (51%), Gaps = 11/377 (2%)

Query: 72  MYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAEL 131
           MY++      A   F ++  R+ +SWN +I+ ++    +  +L +F  M L G    A  
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 132 LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM 191
           L  +++ C    EL  G  +HAL +  G F+ +  V+TALL++Y KC   L A  VFE+M
Sbjct: 61  LVAVLNSCGSFRELRDGILVHALSLERGFFQ-NTLVATALLNMYGKCGTLLDAQSVFEEM 119

Query: 192 VIRNEVSWTAMIS-----GCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
             +N V+W AM+      GC     +   ++LF  M  EGVK   +T   VL +  +   
Sbjct: 120 AEKNVVTWNAMLGVYSLQGCC----WKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDA 175

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           LR GK IH          D  ++ AL++ Y +C  +L  AR +F+    + V  W+S+I 
Sbjct: 176 LRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCG-SLTDARKVFDGMPCRSVGTWNSMIS 234

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
            YS S    EA  +F RM+ E    + VT L+IL +C     L HG  V   I +     
Sbjct: 235 AYSISERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFEL 294

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           D+ +G AL+ MY++C S   + Q+F  M   + ++W+ +I+ +  HG+  EAL+ F  MQ
Sbjct: 295 DLFVGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQ 354

Query: 427 ESGVEPDAITVLAILSA 443
           + G+ P+ +T +++L+ 
Sbjct: 355 QEGILPNRVTFISLLNG 371



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 106/344 (30%), Positives = 181/344 (52%), Gaps = 4/344 (1%)

Query: 174 LYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVT 233
           +YS+C     A+  F ++  RN VSW  MIS     +++   + LF AM  EGV P  +T
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 234 LTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERT 293
           L  VL +C   R+LR+G  +H  +   GF  +  ++ AL++MY +C   L  A+ +FE  
Sbjct: 61  LVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLL-DAQSVFEEM 119

Query: 294 KVKDVVIWSSIIRGYSQSGDLSE-AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHG 352
             K+VV W++++  YS  G   + A++LF+RM LE ++ N +T L +L+S      L  G
Sbjct: 120 AEKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKG 179

Query: 353 LGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFH 412
             +H  + ++  + DV +  AL+N Y+KCGS+T + ++F+ M  R   +W ++IS Y   
Sbjct: 180 KFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSIS 239

Query: 413 GYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEH 472
               EA  +F  MQ+ G   D +T L+IL AC +   ++  + +  ++  E    L +  
Sbjct: 240 ERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESI-SETSFELDLFV 298

Query: 473 YACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG 516
               + +  +    EDA +V   M  + +    S++++A   HG
Sbjct: 299 GTALITMYARCRSPEDAAQVFGRMK-QTNLITWSAIITAFADHG 341


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 184/562 (32%), Positives = 310/562 (55%), Gaps = 3/562 (0%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
            E+  SGL  +   + S++ ACA     Q  G QLH   LK+G   D +   SL+ +Y K
Sbjct: 234 DEMQLSGLRPDCVTVASLLAACASVGDLQK-GKQLHSYLLKAGMSFDYITEGSLLDLYVK 292

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
               E+A+ +F+     + + WN ++  + Q     +S E+F +M   G          I
Sbjct: 293 CGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCI 352

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           +  C+  G++ELG QIH+L I +G FE  ++VS  L+D+YSK      A ++ E +  R+
Sbjct: 353 LRTCTCTGQIELGEQIHSLSIKNG-FESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRD 411

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
            VSWT+MI+G +     +  +  F+ MQ  GV P  + L     ACA ++ +R G  IH 
Sbjct: 412 VVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHA 471

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
             Y  G+  D  +   L+++Y  C  +   A  +F   + KD + W+ +I G+ QS    
Sbjct: 472 RVYVSGYAADISIWNTLVNLYARCGRS-EEAFSLFREIEHKDEITWNGLISGFGQSRLYK 530

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           +A+ +F +M     + N  T ++ +S+    + +  G  VH   +K G   +  + NAL+
Sbjct: 531 QALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALI 590

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           ++Y KCGSI  +  IF+EM+ R+ VSW T+I+    HG G EAL LF +M++ G++P+ +
Sbjct: 591 SLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDV 650

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           T + +L+AC+H GLV+E  + F ++     +    +HYAC VD+LG++G+++ A + V  
Sbjct: 651 TFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDE 710

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGA 555
           MP+  +  I  +L+SAC++H  +E+ E+ A  L+E EP ++A+Y LLS   + +G W   
Sbjct: 711 MPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANR 770

Query: 556 EEVWRVMRAKGLSKSYGFSRIE 577
           ++V ++M+ +G+ K  G S IE
Sbjct: 771 DQVRKMMKDRGIRKEPGRSWIE 792



 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 142/463 (30%), Positives = 239/463 (51%), Gaps = 3/463 (0%)

Query: 27  TAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLF 86
           +A L   ++AC          L++H T++  G  AD +I N LI +YAK      A Q+F
Sbjct: 42  SADLTCALQACRGRGNRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVF 101

Query: 87  DEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELE 146
            E+  RD +SW ++++ + Q+G    +  ++ +M+    +    +L+ ++S C++     
Sbjct: 102 KELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFA 161

Query: 147 LGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGC 206
            GR IHA V    +F    FV  AL+ LY     + +A RVF  M+  + V++  +ISG 
Sbjct: 162 QGRMIHAQVYKQ-AFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGH 220

Query: 207 IDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDH 266
               + +  + +F  MQ  G++P  VT+  +L ACA + DL+ GK +H Y    G  FD+
Sbjct: 221 AQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDY 280

Query: 267 HLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRL 326
               +L+ +Y +C + +  A  IF      +VV+W+ ++  Y Q  DL+++ ++F +M+ 
Sbjct: 281 ITEGSLLDLYVKCGD-IETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQA 339

Query: 327 ERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITS 386
             I PN  T   IL +CT    +  G  +H   +K G   D+ +   L++MYSK G +  
Sbjct: 340 TGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDK 399

Query: 387 SHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH 446
           + +I   +  RD VSWT++I+GY  H + EEAL  F EMQ+ GV PD I + +  SAC  
Sbjct: 400 ARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAG 459

Query: 447 AGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
              +++   +   V      A  I  +   V+L  + G+ E+A
Sbjct: 460 IKAMRQGLQIHARVYVS-GYAADISIWNTLVNLYARCGRSEEA 501



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 98/352 (27%), Positives = 173/352 (49%), Gaps = 7/352 (1%)

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
           +IHA  +V G       +   L+DLY+K      A +VF+++  R+ VSW AM+SG   S
Sbjct: 64  EIHATSVVRG-LGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQS 122

Query: 210 QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS 269
                   L+  M    V PT   L+ VL AC + +    G+ IH   Y   F  +  + 
Sbjct: 123 GLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVG 182

Query: 270 AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
            AL+ +Y     +   A  +F      D V ++++I G++Q G    A+++F  M+L  +
Sbjct: 183 NALIALYLGFG-SFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGL 241

Query: 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
            P+ VT+ ++L++C     L  G  +H Y++KAG++FD     +L+++Y KCG I ++H 
Sbjct: 242 RPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHD 301

Query: 390 IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL 449
           IFN     + V W  ++  YG      ++ ++F +MQ +G+ P+  T   IL  C   G 
Sbjct: 302 IFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQ 361

Query: 450 VKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDACKVVSTMPMK 499
           ++  E + +  +K        + Y     +D+  K G ++ A K++  +  +
Sbjct: 362 IELGEQIHSLSIKN---GFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKR 410


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 190/575 (33%), Positives = 326/575 (56%), Gaps = 15/575 (2%)

Query: 7   YEQTLHLYKQ-ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCT-ALKSGSDADPV 64
           Y   L LYK+ +L P     N  +  +V+ ACA  +  +  G  +H   +   G   D +
Sbjct: 105 YRAALDLYKRMDLQP-----NPVVYTTVLGACASIEALEE-GKAIHSRISGTKGLKLDVI 158

Query: 65  ISNSLISMYAKFSKPESAYQLFDEMPYRDTIS-WNSIINCFTQNGFYVRSLEMFREMYLC 123
           + NSL++MYAK    E A +LF+ M  R ++S WN++I  + Q+G +  ++ ++ +M + 
Sbjct: 159 LENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDMDVE 218

Query: 124 GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
             V        ++S CS +G L+ GR+IHAL+   G+ EL + +  ALL +Y++C     
Sbjct: 219 PSV---RTFTSVLSACSNLGLLDQGRKIHALISSRGT-ELDLSLQNALLTMYARCKCLDD 274

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
           A ++F+++  R+ VSW+AMI+   ++  +D  I+ +  MQ EGV+P   T   VLLACA 
Sbjct: 275 AAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACAS 334

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
           + DLR G+A+H      G+        AL+ +Y     +L  AR +F++ + +D  +W+ 
Sbjct: 335 VGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYG-SLDEARSLFDQIENRDEGLWTV 393

Query: 304 IIRGYSQSGDLSEAMKLFSRMR-LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
           +I GYS+ G  +  ++L+  M+   ++    +    ++S+C      +     H  I   
Sbjct: 394 LIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEAD 453

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
           G+  D  +  +L+NMYS+ G++ S+ Q+F++M++RD ++WTTLI+GY  HG    AL L+
Sbjct: 454 GMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLY 513

Query: 423 LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGK 482
            EM+  G EP  +T + +L AC+HAGL ++ + LF ++  +  +   I HY+C +DLL +
Sbjct: 514 KEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSR 573

Query: 483 SGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLL 542
           +G++ DA ++++ MP++P+    SSL+ A RIH  ++ A   A Q+ + +P + A+Y LL
Sbjct: 574 AGRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLL 633

Query: 543 SMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           S V + +GN  G   V   M A+G+ K  G S IE
Sbjct: 634 SNVHAVTGNLAGMASVRNTMVARGVKKRRGSSWIE 668



 Score =  212 bits (540), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 142/505 (28%), Positives = 251/505 (49%), Gaps = 13/505 (2%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           Q+H   +   + A+  + N ++  Y K     SA   FD +  ++  SW S++  + QNG
Sbjct: 45  QIH-DRISGAASANVFLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTAYAQNG 103

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
            Y  +L++++ M L    +   +   ++  C+ I  LE G+ IH+ +      +L V + 
Sbjct: 104 HYRAALDLYKRMDLQPNPV---VYTTVLGACASIEALEEGKAIHSRISGTKGLKLDVILE 160

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEV-SWTAMISGCIDSQNYDTGIDLFRAMQREGV 227
            +LL +Y+KC     A R+FE+M  R  V SW AMI+    S +++  I L+  M    V
Sbjct: 161 NSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDMD---V 217

Query: 228 KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPAR 287
           +P+  T T VL AC+ L  L  G+ IH      G + D  L  AL+ MY  C + L  A 
Sbjct: 218 EPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARC-KCLDDAA 276

Query: 288 IIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQS 347
            IF+R   +DVV WS++I  ++++    EA++ +S+M+LE + PN  T  ++L +C    
Sbjct: 277 KIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVG 336

Query: 348 FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLIS 407
            L  G  VH  I+  G    +  G AL+++Y+  GS+  +  +F+++  RD   WT LI 
Sbjct: 337 DLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIG 396

Query: 408 GYGFHGYGEEALQLFLEMQESGVEPDAITVLA-ILSACNHAGLVKEAETLFNNVMKEKKI 466
           GY   G+    L+L+ EM+ +   P    + + ++SAC   G   +A    +++  +  I
Sbjct: 397 GYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMI 456

Query: 467 ALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAH 526
           +  +      V++  + G +E A +V   M  +  T   ++L++    HG   +A  L  
Sbjct: 457 SDFV-LATSLVNMYSRWGNLESARQVFDKMSSR-DTLAWTTLIAGYAKHGEHGLALGLYK 514

Query: 527 QL-IEAEPENAANYTLLSMVCSESG 550
           ++ +E    +   + ++   CS +G
Sbjct: 515 EMELEGAEPSELTFMVVLYACSHAG 539


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 184/552 (33%), Positives = 300/552 (54%), Gaps = 4/552 (0%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           N  I  S+I A A +    H+G  +H    K G ++D +ISN+ ++MY K    E+ +Q 
Sbjct: 89  NQFIFASLISAAA-SLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQSVENGWQF 147

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL 145
           F  M   +  S N++++ F       +   +  ++ + GF         I+  C+  G+L
Sbjct: 148 FKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDL 207

Query: 146 ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISG 205
             G+ IH  VI  G       +  +L+++Y+KC     A +VF ++  R+ VSWTA+I+G
Sbjct: 208 NEGKAIHGQVIKSG-INPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITG 266

Query: 206 CIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFD 265
            + ++ Y +G+ +F  M  EG  P   T   +L +C+ L D+  GK +H        D +
Sbjct: 267 FV-AEGYGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGN 325

Query: 266 HHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR 325
             +  AL+ MY +    L  A  IF R   +D+  W+ I+ GY+Q G   +A+K F +M+
Sbjct: 326 DFVGTALVDMYAK-NRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQ 384

Query: 326 LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSIT 385
            E ++PN  TL + LS C+R + L  G  +H   +KAG + D+ + +AL++MY+KCG + 
Sbjct: 385 REGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVE 444

Query: 386 SSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
            +  +F+ + +RD VSW T+I GY  HG G +AL+ F  M + G  PD +T + +LSAC+
Sbjct: 445 DAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACS 504

Query: 446 HAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRIL 505
           H GL++E +  FN++ K   I   IEHYAC VD+LG++GK  +    +  M +  +  I 
Sbjct: 505 HMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIW 564

Query: 506 SSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAK 565
            +++ AC++HG +E  E  A +L E EPE  +NY LLS + +  G W     V  +M  +
Sbjct: 565 ETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTR 624

Query: 566 GLSKSYGFSRIE 577
           G+ K  G S +E
Sbjct: 625 GVKKEPGCSWVE 636



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 131/435 (30%), Positives = 221/435 (50%), Gaps = 4/435 (0%)

Query: 55  LKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSL 114
           +K+G   D  + +SL+++Y K    + A Q+ +EMP +D   WN  ++          ++
Sbjct: 16  IKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAV 75

Query: 115 EMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDL 174
           ++F  M      L   + A +IS  + +G+   G  IHA V   G FE  + +S A + +
Sbjct: 76  QLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYG-FESDILISNAFVTM 134

Query: 175 YSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTL 234
           Y K        + F+ M+I N  S   ++SG  D++  D G  +   +  EG +P   T 
Sbjct: 135 YMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTF 194

Query: 235 TIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTK 294
             +L  CA   DL  GKAIHG     G + D HL  +L+++Y +C  A +  + +F    
Sbjct: 195 ISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACK-VFGEIP 253

Query: 295 VKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG 354
            +DVV W+++I G+   G     +++F++M  E   PN  T ++IL SC+  S +  G  
Sbjct: 254 ERDVVSWTALITGFVAEG-YGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQ 312

Query: 355 VHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGY 414
           VH  I+K  L+ +  +G AL++MY+K   +  +  IFN +  RD  +WT +++GY   G 
Sbjct: 313 VHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQ 372

Query: 415 GEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYA 474
           GE+A++ F++MQ  GV+P+  T+ + LS C+    +     L +  +K  +        A
Sbjct: 373 GEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASA 432

Query: 475 CYVDLLGKSGKIEDA 489
             VD+  K G +EDA
Sbjct: 433 -LVDMYAKCGCVEDA 446



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/401 (25%), Positives = 190/401 (47%), Gaps = 45/401 (11%)

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
           ++L+++Y KC     A +V E+M I++   W   +S           + LF  M+   ++
Sbjct: 28  SSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAVQLFYLMRHTRIR 87

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
             +     ++ A A L D   G++IH      GF+ D  +S A + MY + T+++     
Sbjct: 88  LNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMK-TQSVENGWQ 146

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
            F+   ++++   ++++ G+  +    +  ++  ++ +E  EPN  T ++IL +C  +  
Sbjct: 147 FFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGD 206

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
           L+ G  +H  ++K+G+N D  + N+L+N+Y+KCGS   + ++F E+  RD VSWT LI+G
Sbjct: 207 LNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITG 266

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN-----------HAGLVK------ 451
           +   GYG   L++F +M   G  P+  T ++IL +C+           HA +VK      
Sbjct: 267 FVAEGYG-SGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGN 325

Query: 452 ------------------EAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVV 493
                             +AET+FN ++K    A     +   V    + G+ E A K  
Sbjct: 326 DFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFA-----WTVIVAGYAQDGQGEKAVKCF 380

Query: 494 STMP---MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA 531
             M    +KP+   L+S +S C     L+    L    I+A
Sbjct: 381 IQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKA 421



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 132/286 (46%), Gaps = 11/286 (3%)

Query: 265 DHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM 324
           D HL ++L+++Y +C E+L  AR + E   ++DV  W+  +   +    L EA++LF  M
Sbjct: 23  DSHLWSSLVNVYVKC-ESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAVQLFYLM 81

Query: 325 RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSI 384
           R  RI  N     +++S+        +G  +H  + K G   D+ I NA + MY K  S+
Sbjct: 82  RHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQSV 141

Query: 385 TSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
            +  Q F  M   +  S   L+SG+      ++  ++ +++   G EP+  T ++IL  C
Sbjct: 142 ENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTC 201

Query: 445 NHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPS--- 501
              G + E + +   V+K   I      +   V++  K G    ACKV   +P +     
Sbjct: 202 ASKGDLNEGKAIHGQVIK-SGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSW 260

Query: 502 TRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCS 547
           T +++  V+     G     +ML      AE  N   YT +S++ S
Sbjct: 261 TALITGFVAEGYGSGLRIFNQML------AEGFNPNMYTFISILRS 300



 Score = 45.8 bits (107), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 41/196 (20%), Positives = 83/196 (42%), Gaps = 7/196 (3%)

Query: 359 IMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEA 418
           ++K G+  D  + ++L+N+Y KC S+  + Q+  EM  +D   W   +S        +EA
Sbjct: 15  VIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEA 74

Query: 419 LQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK---EKKIALAIEHYAC 475
           +QLF  M+ + +  +     +++SA    G     E++   V K   E  I ++      
Sbjct: 75  VQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILIS----NA 130

Query: 476 YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPEN 535
           +V +  K+  +E+  +    M ++      + L   C      +   +L   L+E    N
Sbjct: 131 FVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPN 190

Query: 536 AANYTLLSMVCSESGN 551
              +  +   C+  G+
Sbjct: 191 MYTFISILKTCASKGD 206


>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 882

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 189/575 (32%), Positives = 315/575 (54%), Gaps = 5/575 (0%)

Query: 3   SKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDAD 62
           S  +YE+ L +Y  EL  S +  ++  + SV+ A A     +  G  LH   LKSG ++ 
Sbjct: 184 SHGYYEEALEIY-HELRNSWIVPDSFTVSSVLPAFANLLVVKQ-GQGLHGFTLKSGVNSV 241

Query: 63  PVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL 122
            V++N L++MY KFS+P  A ++FDEM  RD++++N++I  + +      S++MF E  L
Sbjct: 242 SVVNNGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLE-NL 300

Query: 123 CGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL 182
             F      +  ++  C  + +L L + I+  ++  G F L   V   L+D+Y+KC   +
Sbjct: 301 DQFKPDILTVTSVLCACGHLRDLSLAKYIYNYMLRAG-FVLESTVKNILIDVYAKCGDMI 359

Query: 183 IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
            A  VF  M  ++ VSW ++ISG I S +    + LF+ M     +   +T  +++    
Sbjct: 360 TARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLST 419

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
            L DL+ GK +H      G   D  +S AL+ MY +C E     +I F      D V W+
Sbjct: 420 RLADLKFGKGLHSNGIKSGIYIDLSVSNALIDMYAKCGEVGDSLKI-FNSMGTLDTVTWN 478

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
           ++I    + GD +  +++ ++MR  ++ P+  T L  L  C   +    G  +HC +++ 
Sbjct: 479 TVISACVRFGDFATGLQVTTQMRKNKVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRF 538

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
           G   ++ IGNAL+ MYSKCG + SS ++F  M+ RD V+WT +I  YG +G GE+AL+ F
Sbjct: 539 GYESELQIGNALIEMYSKCGCLESSFRVFERMSRRDVVTWTGMIYAYGMYGEGEKALESF 598

Query: 423 LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGK 482
           ++M++SG+ PD++  +A++ AC+H+GLV++    F  +    KI   IEHYAC VDLL +
Sbjct: 599 VDMEKSGIVPDSVVFIALIYACSHSGLVEKGLACFEKMKTHYKIDPMIEHYACVVDLLSR 658

Query: 483 SGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLL 542
           S KI  A + +  MP++P   I +S++ ACR  G +E AE ++ ++IE  P++     L 
Sbjct: 659 SQKISKAEEFIQAMPIEPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILA 718

Query: 543 SMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           S   +    W     + + +R K + K+ G+S IE
Sbjct: 719 SNAYAALRKWDKVSLIRKSVRDKHIKKNPGYSWIE 753



 Score =  254 bits (649), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 149/439 (33%), Positives = 242/439 (55%), Gaps = 5/439 (1%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           ++ + L  Y + L  S +  +    PSVIKACA        G  ++   L+ G ++D  +
Sbjct: 86  WFPKALEFYGK-LRESKVSPDKYTFPSVIKACA-GLFDAEMGDLVYKQILEMGFESDLYV 143

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
            N+L+ MY++      A Q+FDEMP RD +SWNS+I+ ++ +G+Y  +LE++ E+     
Sbjct: 144 GNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELRNSWI 203

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
           V  +  ++ ++   + +  ++ G+ +H   +  G   +SV V+  LL +Y K      A 
Sbjct: 204 VPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVSV-VNNGLLAMYLKFSRPTDAR 262

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
           RVF++MV+R+ V++  MI G +  +  +  + +F     +  KP  +T+T VL AC  LR
Sbjct: 263 RVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLE-NLDQFKPDILTVTSVLCACGHLR 321

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
           DL   K I+ Y    GF  +  +   L+ +Y +C + +  AR +F   + KD V W+SII
Sbjct: 322 DLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMI-TARDVFNSMECKDTVSWNSII 380

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
            GY QSGDL EAMKLF  M +   + + +T L ++S  TR + L  G G+H   +K+G+ 
Sbjct: 381 SGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFGKGLHSNGIKSGIY 440

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            D+S+ NAL++MY+KCG +  S +IFN M   D V+W T+IS     G     LQ+  +M
Sbjct: 441 IDLSVSNALIDMYAKCGEVGDSLKIFNSMGTLDTVTWNTVISACVRFGDFATGLQVTTQM 500

Query: 426 QESGVEPDAITVLAILSAC 444
           +++ V PD  T L  L  C
Sbjct: 501 RKNKVVPDMATFLVTLPMC 519



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 136/511 (26%), Positives = 265/511 (51%), Gaps = 8/511 (1%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEM-PYRDTISWNSIINCFTQN 107
           ++H   +  G D     S  LI  Y+ F  P S+  +F  + P ++   WNSII  F++N
Sbjct: 25  RIHALVISLGLDGSDFFSGKLIDKYSHFRAPASSLSVFRRVSPAKNVYIWNSIIRAFSKN 84

Query: 108 GFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFV 167
           G++ ++LE + ++              +I  C+ + + E+G  ++  ++  G FE  ++V
Sbjct: 85  GWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYKQILEMG-FESDLYV 143

Query: 168 STALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV 227
             AL+D+YS+      A +VF++M +R+ VSW ++ISG      Y+  ++++  ++   +
Sbjct: 144 GNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELRNSWI 203

Query: 228 KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPAR 287
            P   T++ VL A A L  ++ G+ +HG+    G +    ++  L+ MY + +     AR
Sbjct: 204 VPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVSVVNNGLLAMYLKFSRPTD-AR 262

Query: 288 IIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQS 347
            +F+   V+D V ++++I GY +   + E++K+F    L++ +P+ +T+ ++L +C    
Sbjct: 263 RVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLE-NLDQFKPDILTVTSVLCACGHLR 321

Query: 348 FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLIS 407
            LS    ++ Y+++AG   + ++ N L+++Y+KCG + ++  +FN M  +D VSW ++IS
Sbjct: 322 DLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIIS 381

Query: 408 GYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIA 467
           GY   G   EA++LF  M     + D IT L ++S       +K  + L +N +K   I 
Sbjct: 382 GYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFGKGLHSNGIKS-GIY 440

Query: 468 LAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQ 527
           + +      +D+  K G++ D+ K+ ++M     T   ++++SAC   G       +  Q
Sbjct: 441 IDLSVSNALIDMYAKCGEVGDSLKIFNSMG-TLDTVTWNTVISACVRFGDFATGLQVTTQ 499

Query: 528 LIEAE--PENAANYTLLSMVCSESGNWLGAE 556
           + + +  P+ A     L M  S +   LG E
Sbjct: 500 MRKNKVVPDMATFLVTLPMCASLAAKRLGKE 530



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 119/409 (29%), Positives = 205/409 (50%), Gaps = 10/409 (2%)

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM-VIR 194
           +S  S + EL   R+IHALVI  G  + S F S  L+D YS       +L VF ++   +
Sbjct: 14  LSSSSNLNEL---RRIHALVISLG-LDGSDFFSGKLIDKYSHFRAPASSLSVFRRVSPAK 69

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
           N   W ++I     +  +   ++ +  ++   V P + T   V+ ACA L D   G  ++
Sbjct: 70  NVYIWNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVY 129

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
                 GF+ D ++  AL+ MY      L  AR +F+   V+D+V W+S+I GYS  G  
Sbjct: 130 KQILEMGFESDLYVGNALVDMYSR-MGLLSRARQVFDEMPVRDLVSWNSLISGYSSHGYY 188

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
            EA++++  +R   I P+S T+ ++L +      +  G G+H + +K+G+N    + N L
Sbjct: 189 EEALEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVSVVNNGL 248

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           + MY K    T + ++F+EM  RD V++ T+I GY      EE++++FLE  +   +PD 
Sbjct: 249 LAMYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLENLDQ-FKPDI 307

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS 494
           +TV ++L AC H   +  A+ ++N +++     L        +D+  K G +  A  V +
Sbjct: 308 LTVTSVLCACGHLRDLSLAKYIYNYMLR-AGFVLESTVKNILIDVYAKCGDMITARDVFN 366

Query: 495 TMPMKPSTRILSSLVSACRIHGRL-EVAEMLAHQLIEAEPENAANYTLL 542
           +M  K  T   +S++S     G L E  ++    +I  E  +   Y +L
Sbjct: 367 SMECK-DTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLML 414



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 162/318 (50%), Gaps = 4/318 (1%)

Query: 230 TRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARII 289
           TRV+   +  A +   +L   + IH      G D     S  L+  Y           + 
Sbjct: 3   TRVSSAFISRALSSSSNLNELRRIHALVISLGLDGSDFFSGKLIDKYSHFRAPASSLSVF 62

Query: 290 FERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFL 349
              +  K+V IW+SIIR +S++G   +A++ + ++R  ++ P+  T  +++ +C      
Sbjct: 63  RRVSPAKNVYIWNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDA 122

Query: 350 SHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGY 409
             G  V+  I++ G   D+ +GNAL++MYS+ G ++ + Q+F+EM  RD VSW +LISGY
Sbjct: 123 EMGDLVYKQILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGY 182

Query: 410 GFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA 469
             HGY EEAL+++ E++ S + PD+ TV ++L A  +  +VK+ + L    +K    +++
Sbjct: 183 SSHGYYEEALEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVS 242

Query: 470 IEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLI 529
           + +       L K  +  DA +V   M ++ S    + +    ++    E  +M    L 
Sbjct: 243 VVNNGLLAMYL-KFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLENLD 301

Query: 530 EAEPENAANYTLLSMVCS 547
           + +P+     T+ S++C+
Sbjct: 302 QFKPD---ILTVTSVLCA 316


>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
 gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 196/574 (34%), Positives = 314/574 (54%), Gaps = 24/574 (4%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           F E     Y+ E    G+ S+    P VIKAC         G ++H   +K G D D  +
Sbjct: 105 FQEAIDFYYRMECE--GIRSDNFTFPFVIKACGELLALM-VGQKVHGKLIKIGFDLDVYV 161

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
            N LI MY K    E A ++FDEMP RD +SWNS+++ +  +G  + SL  F+EM   G 
Sbjct: 162 CNFLIDMYLKIGFIELAEKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGN 221

Query: 126 VLKAELLAGIISL--CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
             KA+    I +L  CS    L  G +IH  VI     EL + V T+L+D+Y KC     
Sbjct: 222 --KADRFGMISALGACSIEHCLRSGMEIHCQVI-RSELELDIMVQTSLIDMYGKCGKVDY 278

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
           A RVF ++  +N V+W AMI G                 + + V P  +T+  +L +C++
Sbjct: 279 AERVFNRIYSKNIVAWNAMIGG---------------MQEDDKVIPDVITMINLLPSCSQ 323

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
              L  GK+IHG+A    F     L  AL+ MY +C E L  A  +F +   K++V W++
Sbjct: 324 SGALLEGKSIHGFAIRKMFLPYLVLETALVDMYGKCGE-LKLAEHVFNQMNEKNMVSWNT 382

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           ++  Y Q+    EA+K+F  +  E ++P+++T+ ++L +    +  S G  +H YIMK G
Sbjct: 383 MVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQIHSYIMKLG 442

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
           L  +  I NA++ MY+KCG + ++ + F+ M  +D VSW T+I  Y  HG+G  ++Q F 
Sbjct: 443 LGSNTFISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYAIHGFGRTSIQFFS 502

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS 483
           EM+  G +P+  T +++L+AC+ +GL+ E    FN++  E  I   IEHY C +DLLG++
Sbjct: 503 EMRGKGFKPNGSTFVSLLTACSISGLIDEGWGFFNSMKVEYGIDPGIEHYGCMLDLLGRN 562

Query: 484 GKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLS 543
           G +++A   +  MP+ P+ RI  SL++A R H  + +AE+ A  ++  + +N   Y LLS
Sbjct: 563 GNLDEAKCFIEEMPLVPTARIWGSLLAASRNHNDVVLAELAARHILSLKHDNTGCYVLLS 622

Query: 544 MVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            + +E+G W   + +  +M+ +GL K+ G S ++
Sbjct: 623 NMYAEAGRWEDVDRIKYLMKEQGLVKTVGCSMVD 656



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 121/473 (25%), Positives = 230/473 (48%), Gaps = 24/473 (5%)

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
           +A  +F++M + DT  WN II  +T NG +  +++ +  M   G          +I  C 
Sbjct: 76  NALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFTFPFVIKACG 135

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
           ++  L +G+++H  +I  G F+L V+V   L+D+Y K     +A +VF++M +R+ VSW 
Sbjct: 136 ELLALMVGQKVHGKLIKIG-FDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRDLVSWN 194

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
           +M+SG     +  + +  F+ M R G K  R  +   L AC+    LR+G  IH      
Sbjct: 195 SMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGMEIHCQVIRS 254

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
             + D  +  +L+ MY +C +  +  R +F R   K++V W+++I G  +          
Sbjct: 255 ELELDIMVQTSLIDMYGKCGKVDYAER-VFNRIYSKNIVAWNAMIGGMQED--------- 304

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
                 +++ P+ +T++ +L SC++   L  G  +H + ++      + +  AL++MY K
Sbjct: 305 ------DKVIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDMYGK 358

Query: 381 CGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
           CG +  +  +FN+M  ++ VSW T+++ Y  +   +EAL++F  +    ++PDAIT+ ++
Sbjct: 359 CGELKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASV 418

Query: 441 LSACNHAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDACKVVSTMPM 498
           L A        E + + + +M   K+ L    +     V +  K G ++ A +    M  
Sbjct: 419 LPAVAELASRSEGKQIHSYIM---KLGLGSNTFISNAIVYMYAKCGDLQTAREFFDGMVC 475

Query: 499 KPSTRILSSLVSACRIHGRLEVA-EMLAHQLIEAEPENAANYTLLSMVCSESG 550
           K      ++++ A  IHG    + +  +    +    N + +  L   CS SG
Sbjct: 476 KDVVS-WNTMIMAYAIHGFGRTSIQFFSEMRGKGFKPNGSTFVSLLTACSISG 527



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 6/141 (4%)

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           + + G + ++  +F +M   D   W  +I GY  +G  +EA+  +  M+  G+  D  T 
Sbjct: 68  FVESGLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFTF 127

Query: 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC--YVDLLGKSGKIEDACKVVST 495
             ++ AC     +   + +   ++   KI   ++ Y C   +D+  K G IE A KV   
Sbjct: 128 PFVIKACGELLALMVGQKVHGKLI---KIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDE 184

Query: 496 MPMKPSTRILSSLVSACRIHG 516
           MP++      +S+VS  +I G
Sbjct: 185 MPVRDLVS-WNSMVSGYQIDG 204


>gi|297828580|ref|XP_002882172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297328012|gb|EFH58431.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 638

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 190/582 (32%), Positives = 325/582 (55%), Gaps = 15/582 (2%)

Query: 3   SKHFYEQTLH---LYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGS 59
            KH+ +   H   +++ E  P         LP  +KAC   +  + +G  +H    K+ +
Sbjct: 19  DKHWEQVMCHFSQMFRDEEKPDNF-----TLPVALKACGELREVK-YGEMIHGFLKKNVT 72

Query: 60  -DADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFR 118
             +D  + +SLI MY K  +   A ++F+E+   D ++W+S+++ F +NG   +++E FR
Sbjct: 73  LGSDLYVGSSLIYMYVKCGRMTEALRMFNELEKPDIVTWSSMVSGFEKNGSPYQAVEFFR 132

Query: 119 EMYLCGFVLKAEL-LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSK 177
            M     V    + L  ++S C+++    LGR +H  V+  G F   + +  +LL+ Y+K
Sbjct: 133 RMATASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVMRRG-FSNDLSLVNSLLNCYAK 191

Query: 178 CHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIV 237
              +  A+ +F+ M  ++ +SW+ +I+  + +      + +F  M  +G +P   T+  V
Sbjct: 192 SRAFKEAVNLFKMMAEKDVISWSTVIACYVQNGAAAEALRVFNEMIDDGTEPNVATVLCV 251

Query: 238 LLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKD 297
           L ACA   DL  G+  H  A   G + +  +S AL+ MY +C      A  +F R   KD
Sbjct: 252 LQACAAANDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSP-EEAYAVFSRIPKKD 310

Query: 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRLER-IEPNSVTLLAILSSCTRQSFLSHGLGVH 356
           VV W ++I G++ +G    +++ FS M LE    P+++ +L +L SC+   FL      H
Sbjct: 311 VVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMLKVLGSCSELGFLKQAECFH 370

Query: 357 CYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGE 416
            Y++K G + +  IG +L+ +YS+CGS+ ++ ++FNE+A +D V WT+LI+GYG HG G 
Sbjct: 371 SYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNEIALKDTVVWTSLITGYGIHGKGT 430

Query: 417 EALQLFLEM-QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC 475
           +AL+ F  M + S V+P+ +T L+ILSAC+HAGL+ E   +F  ++ + ++A  +EHYA 
Sbjct: 431 KALETFNHMVRSSEVKPNEVTFLSILSACSHAGLIHEGLRIFELMVNDYRLAPNLEHYAV 490

Query: 476 YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPEN 535
            VDLLG+ G+++ A ++   MP  P+ +IL +L+ ACRIH   E+AE +A QL E E  +
Sbjct: 491 LVDLLGRVGELDTAIEITKRMPFSPTPQILGTLLGACRIHQNGEMAETVAKQLFELESNH 550

Query: 536 AANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           A  Y L+S +    G W   E++   ++ +G+ K    S IE
Sbjct: 551 AGYYMLMSNMYGVKGEWENVEKLRNSVKQRGIKKGLAESLIE 592



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 104/345 (30%), Positives = 184/345 (53%), Gaps = 18/345 (5%)

Query: 191 MVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNG 250
           M  R    W  ++      ++++  +  F  M R+  KP   TL + L AC ELR+++ G
Sbjct: 1   MTKRTLYQWNTLLKSLSRDKHWEQVMCHFSQMFRDEEKPDNFTLPVALKACGELREVKYG 60

Query: 251 KAIHGY-AYCCGFDFDHHLSAALMHMYCEC---TEALHPARIIFERTKVKDVVIWSSIIR 306
           + IHG+         D ++ ++L++MY +C   TEAL     +F   +  D+V WSS++ 
Sbjct: 61  EMIHGFLKKNVTLGSDLYVGSSLIYMYVKCGRMTEALR----MFNELEKPDIVTWSSMVS 116

Query: 307 GYSQSGDLSEAMKLFSRM-RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
           G+ ++G   +A++ F RM     + P+ VTL+ ++S+CT+ S    G  VH ++M+ G +
Sbjct: 117 GFEKNGSPYQAVEFFRRMATASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVMRRGFS 176

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            D+S+ N+L+N Y+K  +   +  +F  MA +D +SW+T+I+ Y  +G   EAL++F EM
Sbjct: 177 NDLSLVNSLLNCYAKSRAFKEAVNLFKMMAEKDVISWSTVIACYVQNGAAAEALRVFNEM 236

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
            + G EP+  TVL +L AC  A  +++        ++ K +   ++     VD+  K   
Sbjct: 237 IDDGTEPNVATVLCVLQACAAANDLEQGRKTHELAIR-KGLETEVKVSTALVDMYMKCFS 295

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE 530
            E+A  V S +P K     + +L+S   ++G       +AH+ IE
Sbjct: 296 PEEAYAVFSRIPKKDVVSWV-ALISGFTLNG-------MAHRSIE 332


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 196/609 (32%), Positives = 320/609 (52%), Gaps = 53/609 (8%)

Query: 18  LHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFS 77
           +H      +    P V KAC    + +  G   H  +L +G  ++  + N+L++MY++  
Sbjct: 118 MHSLSWTPDNYTFPFVFKACGEISSVR-CGESAHALSLVTGFISNVFVGNALVAMYSRCR 176

Query: 78  KPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE--LLAGI 135
               A ++FDEM   D +SWNSII  + + G    +LEMF  M    F  + +   L  +
Sbjct: 177 SLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRM-TNEFGCRPDNITLVNV 235

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           +  C+ +G   LG+Q+H   +     + ++FV   L+D+Y+KC     A  VF  M +++
Sbjct: 236 LPPCASLGTHSLGKQLHCFAVTSEMIQ-NMFVGNCLVDMYAKCGMMDEANTVFSNMSVKD 294

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQRE------------------------------ 225
            VSW AM++G      ++  + LF  MQ E                              
Sbjct: 295 VVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCR 354

Query: 226 -----GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDF-------DHHLSAALM 273
                G+KP  VTL  VL  CA +  L +GK IH YA     D        ++ +   L+
Sbjct: 355 QMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLI 414

Query: 274 HMYCECTEALHPARIIFER--TKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE--RI 329
            MY +C + +  AR +F+    K +DVV W+ +I GYSQ GD ++A++L S M  E  + 
Sbjct: 415 DMYAKCKK-VDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQT 473

Query: 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN-FDVSIGNALMNMYSKCGSITSSH 388
            PN+ T+   L +C   + L  G  +H Y ++   N   + + N L++MY+KCGSI+ + 
Sbjct: 474 RPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDAR 533

Query: 389 QIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG 448
            +F+ M A++ V+WT+L++GYG HGYGEEAL +F EM+  G + D +T+L +L AC+H+G
Sbjct: 534 LVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSG 593

Query: 449 LVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSL 508
           ++ +    FN +     ++   EHYAC VDLLG++G++  A +++  MPM+P   +  + 
Sbjct: 594 MIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAF 653

Query: 509 VSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLS 568
           +S CRIHG++E+ E  A ++ E    +  +YTLLS + + +G W     +  +MR KG+ 
Sbjct: 654 LSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVK 713

Query: 569 KSYGFSRIE 577
           K  G S +E
Sbjct: 714 KRPGCSWVE 722



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 142/506 (28%), Positives = 233/506 (46%), Gaps = 52/506 (10%)

Query: 65  ISNSLISMYAKFSKPESAYQLFDEMPYRD--TISWNSIINCFTQNGFYVRSLEMFREMYL 122
           +++ LIS Y        A  L    P  D     WNS+I  +  NG   + L +F  M+ 
Sbjct: 61  LTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHS 120

Query: 123 CGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL 182
             +         +   C +I  +  G   HAL +V G F  +VFV  AL+ +YS+C    
Sbjct: 121 LSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTG-FISNVFVGNALVAMYSRCRSLS 179

Query: 183 IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE-GVKPTRVTLTIVLLAC 241
            A +VF++M + + VSW ++I            +++F  M  E G +P  +TL  VL  C
Sbjct: 180 DARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPC 239

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A L     GK +H +A       +  +   L+ MY +C   +  A  +F    VKDVV W
Sbjct: 240 ASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCG-MMDEANTVFSNMSVKDVVSW 298

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLER--------------------------------- 328
           ++++ GYSQ G   +A++LF +M+ E+                                 
Sbjct: 299 NAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLS 358

Query: 329 --IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS-------IGNALMNMYS 379
             I+PN VTL+++LS C     L HG  +HCY +K  ++   +       + N L++MY+
Sbjct: 359 SGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYA 418

Query: 380 KCGSITSSHQIFNEMAA--RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE--PDAI 435
           KC  + ++  +F+ ++   RD V+WT +I GY  HG   +AL+L  EM E   +  P+A 
Sbjct: 419 KCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAF 478

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           T+   L AC     ++  + +    ++ ++ A+ +    C +D+  K G I DA  V   
Sbjct: 479 TISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDN 538

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVA 521
           M M  +    +SL++   +HG  E A
Sbjct: 539 M-MAKNEVTWTSLMTGYGMHGYGEEA 563



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 137/539 (25%), Positives = 226/539 (41%), Gaps = 91/539 (16%)

Query: 11  LHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLI 70
           L ++ +  +  G   +   L +V+  CA   TH   G QLHC A+ S    +  + N L+
Sbjct: 213 LEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHS-LGKQLHCFAVTSEMIQNMFVGNCLV 271

Query: 71  SMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMF------------- 117
            MYAK    + A  +F  M  +D +SWN+++  ++Q G +  ++ +F             
Sbjct: 272 DMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVV 331

Query: 118 ----------------------REMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALV 155
                                 R+M   G       L  ++S C+ +G L  G++IH   
Sbjct: 332 TWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYA 391

Query: 156 I-------VDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI--RNEVSWTAMISGC 206
           I        +G  + ++ ++  L+D+Y+KC     A  +F+ +    R+ V+WT MI G 
Sbjct: 392 IKYPIDLRKNGHGDENMVINQ-LIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGY 450

Query: 207 IDSQNYDTGIDLFRAMQREG--VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFD- 263
               + +  ++L   M  E    +P   T++  L+ACA L  LR GK IH YA     + 
Sbjct: 451 SQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNA 510

Query: 264 FDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSR 323
               +S  L+ MY +C  ++  AR++F+    K+ V W+S++ GY   G   EA+ +F  
Sbjct: 511 VPLFVSNCLIDMYAKCG-SISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDE 569

Query: 324 MRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS 383
           MR    + + VTLL +L +C+    +  G+    Y  +    F VS G            
Sbjct: 570 MRRIGFKLDGVTLLVVLYACSHSGMIDQGME---YFNRMKTVFGVSPGPE---------- 616

Query: 384 ITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
                             +  L+   G  G    AL+L  EM    +EP  +  +A LS 
Sbjct: 617 -----------------HYACLVDLLGRAGRLNAALRLIEEMP---MEPPPVVWVAFLSC 656

Query: 444 CNHAGLVKEAETLFNNVMKEKKIALAIEHYACYV---DLLGKSGKIEDACKVVSTMPMK 499
           C   G V+  E        EK   LA  H   Y    +L   +G+ +D  ++ S M  K
Sbjct: 657 CRIHGKVELGE-----YAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHK 710



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 123/480 (25%), Positives = 202/480 (42%), Gaps = 74/480 (15%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALK-------SGSDADPVISNS 68
           +++  SG+  N   L SV+  CA      H G ++HC A+K       +G   + ++ N 
Sbjct: 354 RQMLSSGIKPNEVTLISVLSGCASVGALMH-GKEIHCYAIKYPIDLRKNGHGDENMVINQ 412

Query: 69  LISMYAKFSKPESAYQLFDEM--PYRDTISWNSIINCFTQNGFYVRSLEMFREMYL--CG 124
           LI MYAK  K ++A  +FD +    RD ++W  +I  ++Q+G   ++LE+  EM+   C 
Sbjct: 413 LIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQ 472

Query: 125 FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
               A  ++  +  C+ +  L +G+QIHA  + +    + +FVS  L+D+Y+KC     A
Sbjct: 473 TRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDA 532

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
             VF+ M+ +NEV+WT++++G       +  + +F  M+R G K   VTL +VL AC+  
Sbjct: 533 RLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSH- 591

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
               +G    G  Y         +S    H  C                          +
Sbjct: 592 ----SGMIDQGMEYFNRMKTVFGVSPGPEHYAC--------------------------L 621

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
           +    ++G L+ A++L   M +   EP  V  +A LS C     +  G      I +   
Sbjct: 622 VDLLGRAGRLNAALRLIEEMPM---EPPPVVWVAFLSCCRIHGKVELGEYAAEKITELAS 678

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEM-----AARDFVSW-------TTLISGYGFH 412
           N D S    L N+Y+  G      +I + M       R   SW       TT   G   H
Sbjct: 679 NHDGSY-TLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTH 737

Query: 413 GYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEH 472
            + +E  Q+ L+  +                    G V E     ++V  E+K  L  EH
Sbjct: 738 PHAKEIYQVLLDHMQR---------------IKDIGYVPETGFALHDVDDEEKDDLLFEH 782



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 114/233 (48%), Gaps = 3/233 (1%)

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           W+S+IR Y  +G  ++ + LF  M      P++ T   +  +C   S +  G   H   +
Sbjct: 95  WNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSL 154

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
             G   +V +GNAL+ MYS+C S++ + ++F+EM+  D VSW ++I  Y   G  + AL+
Sbjct: 155 VTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALE 214

Query: 421 LFLEM-QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479
           +F  M  E G  PD IT++ +L  C   G     + L    +  + I        C VD+
Sbjct: 215 MFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVG-NCLVDM 273

Query: 480 LGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE 532
             K G +++A  V S M +K      +++V+     GR E A  L  ++ E +
Sbjct: 274 YAKCGMMDEANTVFSNMSVKDVVS-WNAMVAGYSQIGRFEDAVRLFEKMQEEK 325


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 174/551 (31%), Positives = 308/551 (55%), Gaps = 9/551 (1%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSGS-DADPVISNSLISMYAKFSKPESAYQLFDE 88
            P +++A     T      QLH  AL+ G    D   S +L+  Y +F +   AY+ FDE
Sbjct: 74  FPPLLRAAQGPGT----AAQLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRAFDE 129

Query: 89  MPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELG 148
           M +RD  +WN++++   +N     ++ +F  M + G    A  ++ ++ +C  +G+  L 
Sbjct: 130 MRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALA 189

Query: 149 RQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCID 208
             +H L  V    +  +FV  A++D+Y K        +VF+ M  R+ V+W ++ISG   
Sbjct: 190 LAMH-LYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQ 248

Query: 209 SQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHL 268
                + +++F  M+  GV P  +TL  +  A A+  D+  G+++H Y    G+D    +
Sbjct: 249 GGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDII 308

Query: 269 SA-ALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM-RL 326
           +  A++ MY + ++ +  A+ +F+   V+D V W+++I GY Q+G  SEA+ ++  M + 
Sbjct: 309 AGNAIVDMYAKLSK-IEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKH 367

Query: 327 ERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITS 386
           E ++P   T +++L + +    L  G  +H   +K GLN DV +G  ++++Y+KCG +  
Sbjct: 368 EGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDE 427

Query: 387 SHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH 446
           +  +F +   R    W  +ISG G HG+G +AL LF +MQ+ G+ PD +T +++L+AC+H
Sbjct: 428 AMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSH 487

Query: 447 AGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILS 506
           AGLV +    FN +     I    +HYAC VD+ G++G+++DA   +  MP+KP + I  
Sbjct: 488 AGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWG 547

Query: 507 SLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566
           +L+ ACRIHG +E+ ++ +  L E +P+N   Y L+S + ++ G W G +EV  ++R + 
Sbjct: 548 ALLGACRIHGNVEMGKVASQNLFELDPKNVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQN 607

Query: 567 LSKSYGFSRIE 577
           L K+ G+S IE
Sbjct: 608 LQKTPGWSSIE 618



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 110/415 (26%), Positives = 199/415 (47%), Gaps = 8/415 (1%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G+  +   + SV+  C      +   L +H  A+K G D +  + N++I +Y K    E 
Sbjct: 165 GVAGDAVTVSSVLPMCVLLGD-RALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEE 223

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
             ++FD M  RD ++WNSII+   Q G    ++EMF  M   G       L  + S  +Q
Sbjct: 224 VRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQ 283

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
            G++  GR +H  ++  G     +    A++D+Y+K      A R+F+ M +R+ VSW  
Sbjct: 284 CGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNT 343

Query: 202 MISGCIDSQNYDTGIDLFRAMQR-EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
           +I+G + +      I ++  MQ+ EG+KP + T   VL A + L  L+ G  +H  +   
Sbjct: 344 LITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKT 403

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
           G + D ++   ++ +Y +C + L  A ++FE+T  +    W+++I G    G  ++A+ L
Sbjct: 404 GLNLDVYVGTCVIDLYAKCGK-LDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSL 462

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA-GLNFDVSIGNALMNMYS 379
           FS+M+ E I P+ VT +++L++C+    +  G      +  A G+         +++M+ 
Sbjct: 463 FSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFG 522

Query: 380 KCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFHG---YGEEALQLFLEMQESGV 430
           + G +  +      M  + D   W  L+     HG    G+ A Q   E+    V
Sbjct: 523 RAGQLDDAFDFIRNMPIKPDSAIWGALLGACRIHGNVEMGKVASQNLFELDPKNV 577


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 184/544 (33%), Positives = 299/544 (54%), Gaps = 35/544 (6%)

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL--CG 124
           N+++S Y+K  +      LFD MP RD +SWNS+I+ +   G   +S++ +  M      
Sbjct: 79  NTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGS 138

Query: 125 FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSK------- 177
           F L     + ++ L S+ G ++LGRQIH  V+  G F   VFV + L+D+YSK       
Sbjct: 139 FNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFG-FMSYVFVGSPLVDMYSKMGMISCA 197

Query: 178 ------------------------CHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYD 213
                                   C     + R+F +M  R+ +SWT+MI+G   +    
Sbjct: 198 RKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDR 257

Query: 214 TGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALM 273
             ID+FR M+ E ++  + T   VL AC  +  L+ GK +H Y     +  +  +++AL+
Sbjct: 258 DAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALV 317

Query: 274 HMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNS 333
            MYC+C + +  A  +F++   K+VV W++++ GY Q+G   EA+K FS M+   IEP+ 
Sbjct: 318 DMYCKC-KNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDD 376

Query: 334 VTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNE 393
            TL +++SSC   + L  G   H   + +GL   +++ NAL+ +Y KCGSI  SH++FNE
Sbjct: 377 FTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNE 436

Query: 394 MAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEA 453
           ++ +D V+WT L+SGY   G   E + LF  M   G++PD +T + +LSAC+ AGLV++ 
Sbjct: 437 ISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKG 496

Query: 454 ETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACR 513
             +F +++ E  I    +HY C +DL  ++G+IE+A   ++ MP  P     ++L+S+CR
Sbjct: 497 NQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCR 556

Query: 514 IHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGF 573
            +G +++ +  A  L+E +P N A+Y LLS V +  G W     + + MR KGL K  G 
Sbjct: 557 FYGNMDIGKWAAEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGC 616

Query: 574 SRIE 577
           S I+
Sbjct: 617 SWIK 620



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 125/454 (27%), Positives = 219/454 (48%), Gaps = 38/454 (8%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           Q++  Y   L   G ++   I  S +   A  +     G Q+H   +K G  +   + + 
Sbjct: 124 QSVKAYNLMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSP 183

Query: 69  LISMYAKFSKPESAYQLFDEMP-------------------------------YRDTISW 97
           L+ MY+K      A ++FDE+P                                RD+ISW
Sbjct: 184 LVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISW 243

Query: 98  NSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIV 157
            S+I  FTQNG    ++++FREM L    +       +++ C  +  L+ G+Q+HA  I+
Sbjct: 244 TSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAY-II 302

Query: 158 DGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGID 217
              ++ ++FV++AL+D+Y KC +   A  VF++M  +N VSWTAM+ G   +   +  + 
Sbjct: 303 RTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVK 362

Query: 218 LFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYC 277
            F  MQ+ G++P   TL  V+ +CA L  L  G   H  A   G      +S AL+ +Y 
Sbjct: 363 TFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYG 422

Query: 278 ECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLL 337
           +C  ++  +  +F     KD V W++++ GY+Q G  +E + LF  M    ++P+ VT +
Sbjct: 423 KCG-SIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFI 481

Query: 338 AILSSCTRQSFLSHGLGV-HCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA- 395
            +LS+C+R   +  G  +    I + G+         +++++S+ G I  +    N+M  
Sbjct: 482 GVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPF 541

Query: 396 ARDFVSWTTLISGYGFHG---YGEEALQLFLEMQ 426
           + D +SW TL+S   F+G    G+ A +  +E+ 
Sbjct: 542 SPDAISWATLLSSCRFYGNMDIGKWAAEFLMELD 575



 Score = 45.8 bits (107), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 60/126 (47%), Gaps = 4/126 (3%)

Query: 338 AILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR 397
           A+L  C      +    +H +I+K     +  + N L++ Y+K GSI  + ++F++M   
Sbjct: 14  ALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHP 73

Query: 398 DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLF 457
           +  SW T++S Y   G   E   LF  M       D ++  +++S     GL+ ++   +
Sbjct: 74  NLYSWNTILSAYSKLGRVSEMEYLFDAMPRR----DGVSWNSLISGYAGCGLIYQSVKAY 129

Query: 458 NNVMKE 463
           N ++K 
Sbjct: 130 NLMLKN 135


>gi|334185017|ref|NP_186807.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546765|sp|Q9SS97.2|PP205_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g01580
 gi|332640170|gb|AEE73691.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 187/570 (32%), Positives = 319/570 (55%), Gaps = 12/570 (2%)

Query: 12  HLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGS-DADPVISNSLI 70
           H+++ E  P         LP  +KAC   +   ++G  +H    K  +  +D  + +SLI
Sbjct: 50  HMFRDEEKPDNF-----TLPVALKACGELR-EVNYGEMIHGFVKKDVTLGSDLYVGSSLI 103

Query: 71  SMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE 130
            MY K  +   A ++FDE+   D ++W+S+++ F +NG   +++E FR M +   V    
Sbjct: 104 YMYIKCGRMIEALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDR 163

Query: 131 L-LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
           + L  ++S C+++    LGR +H  VI  G F   + +  +LL+ Y+K   +  A+ +F+
Sbjct: 164 VTLITLVSACTKLSNSRLGRCVHGFVIRRG-FSNDLSLVNSLLNCYAKSRAFKEAVNLFK 222

Query: 190 QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
            +  ++ +SW+ +I+  + +      + +F  M  +G +P   T+  VL ACA   DL  
Sbjct: 223 MIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQ 282

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
           G+  H  A   G + +  +S AL+ MY +C      A  +F R   KDVV W ++I G++
Sbjct: 283 GRKTHELAIRKGLETEVKVSTALVDMYMKCFSP-EEAYAVFSRIPRKDVVSWVALISGFT 341

Query: 310 QSGDLSEAMKLFSRMRLER-IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
            +G    +++ FS M LE    P+++ ++ +L SC+   FL      H Y++K G + + 
Sbjct: 342 LNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYVIKYGFDSNP 401

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM-QE 427
            IG +L+ +YS+CGS+ ++ ++FN +A +D V WT+LI+GYG HG G +AL+ F  M + 
Sbjct: 402 FIGASLVELYSRCGSLGNASKVFNGIALKDTVVWTSLITGYGIHGKGTKALETFNHMVKS 461

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487
           S V+P+ +T L+ILSAC+HAGL+ E   +F  ++ + ++A  +EHYA  VDLLG+ G ++
Sbjct: 462 SEVKPNEVTFLSILSACSHAGLIHEGLRIFKLMVNDYRLAPNLEHYAVLVDLLGRVGDLD 521

Query: 488 DACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCS 547
            A ++   MP  P+ +IL +L+ ACRIH   E+AE +A +L E E  +A  Y L+S V  
Sbjct: 522 TAIEITKRMPFSPTPQILGTLLGACRIHQNGEMAETVAKKLFELESNHAGYYMLMSNVYG 581

Query: 548 ESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
             G W   E++   ++ +G+ K    S IE
Sbjct: 582 VKGEWENVEKLRNSVKQRGIKKGLAESLIE 611



 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 137/482 (28%), Positives = 248/482 (51%), Gaps = 11/482 (2%)

Query: 75  KFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAG 134
           KFS    A Q+F EM  R    WN+++   ++   +   L  F  M+          L  
Sbjct: 6   KFSSSVDARQMFGEMTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPV 65

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
            +  C ++ E+  G  IH  V  D +    ++V ++L+ +Y KC   + ALR+F+++   
Sbjct: 66  ALKACGELREVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKP 125

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAM-QREGVKPTRVTLTIVLLACAELRDLRNGKAI 253
           + V+W++M+SG   + +    ++ FR M     V P RVTL  ++ AC +L + R G+ +
Sbjct: 126 DIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCV 185

Query: 254 HGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGD 313
           HG+    GF  D  L  +L++ Y + + A   A  +F+    KDV+ WS++I  Y Q+G 
Sbjct: 186 HGFVIRRGFSNDLSLVNSLLNCYAK-SRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGA 244

Query: 314 LSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNA 373
            +EA+ +F+ M  +  EPN  T+L +L +C     L  G   H   ++ GL  +V +  A
Sbjct: 245 AAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTA 304

Query: 374 LMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF-LEMQESGVEP 432
           L++MY KC S   ++ +F+ +  +D VSW  LISG+  +G    +++ F + + E+   P
Sbjct: 305 LVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRP 364

Query: 433 DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDAC 490
           DAI ++ +L +C+  G +++A+   + V+   K       +  A  V+L  + G + +A 
Sbjct: 365 DAILMVKVLGSCSELGFLEQAKCFHSYVI---KYGFDSNPFIGASLVELYSRCGSLGNAS 421

Query: 491 KVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV--CSE 548
           KV + + +K  T + +SL++   IHG+   A    + ++++        T LS++  CS 
Sbjct: 422 KVFNGIALK-DTVVWTSLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSH 480

Query: 549 SG 550
           +G
Sbjct: 481 AG 482



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 95/171 (55%), Gaps = 2/171 (1%)

Query: 276 YCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVT 335
           +C    +   AR +F     + +  W+++++  S+     E +  FS M  +  +P++ T
Sbjct: 3   FCRKFSSSVDARQMFGEMTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFT 62

Query: 336 LLAILSSCTRQSFLSHGLGVHCYIMK-AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEM 394
           L   L +C     +++G  +H ++ K   L  D+ +G++L+ MY KCG +  + ++F+E+
Sbjct: 63  LPVALKACGELREVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDEL 122

Query: 395 AARDFVSWTTLISGYGFHGYGEEALQLFLEM-QESGVEPDAITVLAILSAC 444
              D V+W++++SG+  +G   +A++ F  M   S V PD +T++ ++SAC
Sbjct: 123 EKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSAC 173



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 71/179 (39%), Gaps = 3/179 (1%)

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           M    K  S   + Q+F EM  R    W TL+         EE L  F  M     +PD 
Sbjct: 1   MGFCRKFSSSVDARQMFGEMTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDN 60

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS 494
            T+   L AC     V   E +   V K+  +   +   +  + +  K G++ +A ++  
Sbjct: 61  FTLPVALKACGELREVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFD 120

Query: 495 TMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV--CSESGN 551
            +  KP     SS+VS    +G    A     +++ A        TL+++V  C++  N
Sbjct: 121 ELE-KPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSN 178


>gi|6016735|gb|AAF01561.1|AC009325_31 hypothetical protein [Arabidopsis thaliana]
          Length = 641

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 187/570 (32%), Positives = 319/570 (55%), Gaps = 12/570 (2%)

Query: 12  HLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGS-DADPVISNSLI 70
           H+++ E  P         LP  +KAC   +   ++G  +H    K  +  +D  + +SLI
Sbjct: 31  HMFRDEEKPDNF-----TLPVALKACGELR-EVNYGEMIHGFVKKDVTLGSDLYVGSSLI 84

Query: 71  SMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE 130
            MY K  +   A ++FDE+   D ++W+S+++ F +NG   +++E FR M +   V    
Sbjct: 85  YMYIKCGRMIEALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDR 144

Query: 131 L-LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
           + L  ++S C+++    LGR +H  VI  G F   + +  +LL+ Y+K   +  A+ +F+
Sbjct: 145 VTLITLVSACTKLSNSRLGRCVHGFVIRRG-FSNDLSLVNSLLNCYAKSRAFKEAVNLFK 203

Query: 190 QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
            +  ++ +SW+ +I+  + +      + +F  M  +G +P   T+  VL ACA   DL  
Sbjct: 204 MIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQ 263

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
           G+  H  A   G + +  +S AL+ MY +C      A  +F R   KDVV W ++I G++
Sbjct: 264 GRKTHELAIRKGLETEVKVSTALVDMYMKCFSP-EEAYAVFSRIPRKDVVSWVALISGFT 322

Query: 310 QSGDLSEAMKLFSRMRLER-IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
            +G    +++ FS M LE    P+++ ++ +L SC+   FL      H Y++K G + + 
Sbjct: 323 LNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYVIKYGFDSNP 382

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM-QE 427
            IG +L+ +YS+CGS+ ++ ++FN +A +D V WT+LI+GYG HG G +AL+ F  M + 
Sbjct: 383 FIGASLVELYSRCGSLGNASKVFNGIALKDTVVWTSLITGYGIHGKGTKALETFNHMVKS 442

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487
           S V+P+ +T L+ILSAC+HAGL+ E   +F  ++ + ++A  +EHYA  VDLLG+ G ++
Sbjct: 443 SEVKPNEVTFLSILSACSHAGLIHEGLRIFKLMVNDYRLAPNLEHYAVLVDLLGRVGDLD 502

Query: 488 DACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCS 547
            A ++   MP  P+ +IL +L+ ACRIH   E+AE +A +L E E  +A  Y L+S V  
Sbjct: 503 TAIEITKRMPFSPTPQILGTLLGACRIHQNGEMAETVAKKLFELESNHAGYYMLMSNVYG 562

Query: 548 ESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
             G W   E++   ++ +G+ K    S IE
Sbjct: 563 VKGEWENVEKLRNSVKQRGIKKGLAESLIE 592



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 182/342 (53%), Gaps = 12/342 (3%)

Query: 191 MVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNG 250
           M  R+   W  ++      + ++  +  F  M R+  KP   TL + L AC ELR++  G
Sbjct: 1   MTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGELREVNYG 60

Query: 251 KAIHGYAYC-CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
           + IHG+         D ++ ++L++MY +C   +   R +F+  +  D+V WSS++ G+ 
Sbjct: 61  EMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALR-MFDELEKPDIVTWSSMVSGFE 119

Query: 310 QSGDLSEAMKLFSRMRL-ERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
           ++G   +A++ F RM +   + P+ VTL+ ++S+CT+ S    G  VH ++++ G + D+
Sbjct: 120 KNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDL 179

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
           S+ N+L+N Y+K  +   +  +F  +A +D +SW+T+I+ Y  +G   EAL +F +M + 
Sbjct: 180 SLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMDD 239

Query: 429 GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIED 488
           G EP+  TVL +L AC  A  +++        ++ K +   ++     VD+  K    E+
Sbjct: 240 GTEPNVATVLCVLQACAAAHDLEQGRKTHELAIR-KGLETEVKVSTALVDMYMKCFSPEE 298

Query: 489 ACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE 530
           A  V S +P K     + +L+S   ++G       +AH+ IE
Sbjct: 299 AYAVFSRIPRKDVVSWV-ALISGFTLNG-------MAHRSIE 332


>gi|218195864|gb|EEC78291.1| hypothetical protein OsI_18005 [Oryza sativa Indica Group]
          Length = 690

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 186/534 (34%), Positives = 294/534 (55%), Gaps = 7/534 (1%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G+QLH   +K G  +D +++N+LI MYAK  K   A ++FD MP R+ +SW +++  F  
Sbjct: 23  GVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMPERNVVSWTALMVGFLH 82

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           +G     L +F EM   G       L+  +  C   G    G QIH + +  G FE    
Sbjct: 83  HGEARECLRLFGEMRGSGTSPNEFTLSATLKACG--GGTRAGVQIHGVCVRTG-FEGHDV 139

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE- 225
           V+ +L+ +YSK      A RVF+ +  RN  +W +MISG   +      + +FR MQR  
Sbjct: 140 VANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQGRDSLLVFREMQRRH 199

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH--LSAALMHMYCECTEAL 283
             +P   T   +L AC+ L   R G  +H      G     +  L+ AL+ +Y +C   L
Sbjct: 200 DEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGALLDVYVKCHR-L 258

Query: 284 HPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC 343
             A  +F+  + ++ + W+++I G++Q G + EAM LF R     +  +   L ++++  
Sbjct: 259 PVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADGHVLSSVVAVF 318

Query: 344 TRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWT 403
              + +  G  VHCY  K     DVS+ N+L++MY KCG    + + F EM AR+ VSWT
Sbjct: 319 ADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFREMPARNVVSWT 378

Query: 404 TLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKE 463
            +I+G G HG+G EA+ LF EMQ  GVE D +  LA+LSAC+H+GLV E    F+ + ++
Sbjct: 379 AMINGVGKHGHGREAIDLFEEMQAEGVEADEVAYLALLSACSHSGLVDECRRYFSRICQD 438

Query: 464 KKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEM 523
           +++    EHYAC VDLLG++G++ +A +++ +MPM+P+  +  +L+SACR+H  + V   
Sbjct: 439 RRMRPKAEHYACMVDLLGRAGELREAKELILSMPMEPTVGVWQTLLSACRVHKDVAVGRE 498

Query: 524 LAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +   L+  + +N  NY +LS + +E+G W   + +   MR KGL K  G S  E
Sbjct: 499 VGDVLLAVDGDNPVNYVMLSNILAEAGEWRECQGIRGAMRRKGLRKQGGCSWTE 552



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 114/224 (50%), Gaps = 4/224 (1%)

Query: 231 RVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIF 290
           R  +  +L A A    LR G  +H      GF  D  L+  L+ MY +C + LH A  +F
Sbjct: 4   RRMIADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGK-LHMAGEVF 62

Query: 291 ERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLS 350
           +    ++VV W++++ G+   G+  E ++LF  MR     PN  TL A L +C   +   
Sbjct: 63  DGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACGGGT--R 120

Query: 351 HGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYG 410
            G+ +H   ++ G      + N+L+ MYSK      + ++F+ + +R+  +W ++ISGY 
Sbjct: 121 AGVQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYA 180

Query: 411 FHGYGEEALQLFLEMQESGVE-PDAITVLAILSACNHAGLVKEA 453
             G G ++L +F EMQ    E PD  T  ++L AC+  G  +E 
Sbjct: 181 HAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREG 224


>gi|90399180|emb|CAJ86042.1| H0723C07.12 [Oryza sativa Indica Group]
          Length = 886

 Score =  331 bits (849), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 186/534 (34%), Positives = 294/534 (55%), Gaps = 7/534 (1%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G+QLH   +K G  +D +++N+LI MYAK  K   A ++FD MP R+ +SW +++  F  
Sbjct: 219 GVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMPERNVVSWTALMVGFLH 278

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           +G     L +F EM   G       L+  +  C   G    G QIH + +  G FE    
Sbjct: 279 HGEARECLRLFGEMRGSGTSPNEFTLSATLKACG--GGTRAGVQIHGVCVRTG-FEGHDV 335

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE- 225
           V+ +L+ +YSK      A RVF+ +  RN  +W +MISG   +      + +FR MQR  
Sbjct: 336 VANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQGRDSLLVFREMQRRH 395

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH--LSAALMHMYCECTEAL 283
             +P   T   +L AC+ L   R G  +H      G     +  L+ AL+ +Y +C   L
Sbjct: 396 DEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGALLDVYVKCHR-L 454

Query: 284 HPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC 343
             A  +F+  + ++ + W+++I G++Q G + EAM LF R     +  +   L ++++  
Sbjct: 455 PVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADGHVLSSVVAVF 514

Query: 344 TRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWT 403
              + +  G  VHCY  K     DVS+ N+L++MY KCG    + + F EM AR+ VSWT
Sbjct: 515 ADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFREMPARNVVSWT 574

Query: 404 TLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKE 463
            +I+G G HG+G EA+ LF EMQ  GVE D +  LA+LSAC+H+GLV E    F+ + ++
Sbjct: 575 AMINGVGKHGHGREAIDLFEEMQAEGVEADEVAYLALLSACSHSGLVDECRRYFSRICQD 634

Query: 464 KKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEM 523
           +++    EHYAC VDLLG++G++ +A +++ +MPM+P+  +  +L+SACR+H  + V   
Sbjct: 635 RRMRPKAEHYACMVDLLGRAGELREAKELILSMPMEPTVGVWQTLLSACRVHKDVAVGRE 694

Query: 524 LAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +   L+  + +N  NY +LS + +E+G W   + +   MR KGL K  G S  E
Sbjct: 695 VGDVLLAVDGDNPVNYVMLSNILAEAGEWRECQGIRGAMRRKGLRKQGGCSWTE 748



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 119/238 (50%), Gaps = 6/238 (2%)

Query: 219 FRAMQREGVKP--TRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMY 276
            RA+   G  P   R  +  +L A A    LR G  +H      GF  D  L+  L+ MY
Sbjct: 186 LRAIDLLGFLPMERRRMIADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMY 245

Query: 277 CECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTL 336
            +C + LH A  +F+    ++VV W++++ G+   G+  E ++LF  MR     PN  TL
Sbjct: 246 AKCGK-LHMAGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTL 304

Query: 337 LAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA 396
            A L +C   +    G+ +H   ++ G      + N+L+ MYSK      + ++F+ + +
Sbjct: 305 SATLKACGGGT--RAGVQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPS 362

Query: 397 RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE-PDAITVLAILSACNHAGLVKEA 453
           R+  +W ++ISGY   G G ++L +F EMQ    E PD  T  ++L AC+  G  +E 
Sbjct: 363 RNLATWNSMISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREG 420


>gi|357127001|ref|XP_003565175.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Brachypodium distachyon]
          Length = 849

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 194/581 (33%), Positives = 322/581 (55%), Gaps = 14/581 (2%)

Query: 8   EQTLHLYKQELHPSG--LYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
            + L L++  L   G     + A L +V+  CA A      G  +H  A+KSG DA P +
Sbjct: 144 RRGLELFRDCLEDLGGTAAPDEATLVTVLPMCA-ALAWPETGRAVHGLAVKSGWDAAPRV 202

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPY---RDTISWNSIINCFTQNGFYVRSLEMFREMYL 122
           SN L+ MYAK  +   A   F E P    R+ +SWN ++  + +NG    +  + REM +
Sbjct: 203 SNVLVDMYAKCGEMADAECAFLEAPPGAGRNVVSWNVMLGGYARNGEAGAAFGLLREMQM 262

Query: 123 CGFVLKAE--LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
               + A+   +  ++ +CS + EL   R++HA V+  G       V  AL+  Y +C  
Sbjct: 263 EERGVPADEITMLSVLPVCSGLPELAKLRELHAFVVRRGLHLTGDMVPNALIAAYGRCGC 322

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE-GVKPTRVTLTIVLL 239
            L A RVF+ +  +   SW A+I     +      I+LFR M    G KP   ++  +LL
Sbjct: 323 LLHACRVFDGICSKMVSSWNALIGAHAQNGEASAAIELFREMTNACGQKPDWFSIGSLLL 382

Query: 240 ACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCEC-TEALHPARIIFERTKVKDV 298
           AC  L+ L +GKA HG+    G + D  +  +L+ +Y +C  E+L  AR++F+  + KD 
Sbjct: 383 ACGNLKHLLHGKAAHGFILRNGLEKDSFIRVSLLSVYIQCGRESL--ARVLFDAVEEKDE 440

Query: 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE--PNSVTLLAILSSCTRQSFLSHGLGVH 356
           V W+++I GYSQ+G   E+++LF  M+ ++    P+ +   + L +C+    +  G  +H
Sbjct: 441 VSWNTMIAGYSQNGLPGESLQLFREMQSKKGGHWPSLLAATSALVACSELPAVRLGKEMH 500

Query: 357 CYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGE 416
           C+ +KA L  D  + +++++MYSKCGS+  +   F+ + A+D VSWT +I+GY  +G G+
Sbjct: 501 CFALKADLCEDSFLSSSIIDMYSKCGSVDDARVFFDRLKAKDAVSWTVMITGYAVNGRGK 560

Query: 417 EALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACY 476
           EA+ L+ +M   G+EPD  T L +L AC HAG++++    F  +    KI   +EHYAC 
Sbjct: 561 EAVGLYDKMGREGMEPDGFTYLGLLMACGHAGMLEDGLCFFQEMRNLPKIEAKLEHYACV 620

Query: 477 VDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENA 536
           + +L ++G+  DA  ++  MP +P  +ILSS++SAC +HG +E+ + +A +L+E EP  A
Sbjct: 621 IGMLSRAGRFADAVALMEVMPEEPDAKILSSVLSACHMHGEVELGKKVADKLLELEPHKA 680

Query: 537 ANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +Y L S + + S  W    +V +++R  G++K  G S I+
Sbjct: 681 EHYVLASNMYAGSRQWDEMRKVRKMLRDAGVAKEPGCSWID 721



 Score =  194 bits (494), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 151/546 (27%), Positives = 261/546 (47%), Gaps = 30/546 (5%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSG-SDADPVISNSLISMYAKFSKP 79
            G+  +   LP  +K+C         G Q+H  A K G +D DP + NSL+SMY +  + 
Sbjct: 61  DGVAPDRFTLPPALKSC-----RGDDGRQVHAVAAKLGLADGDPFVGNSLVSMYGRCGRV 115

Query: 80  ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY--LCGFVLKAE-LLAGII 136
           + A ++F+ M  R+ +SWN+++          R LE+FR+    L G     E  L  ++
Sbjct: 116 DDAEKVFEGMAGRNLVSWNALMAAVADP---RRGLELFRDCLEDLGGTAAPDEATLVTVL 172

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI--- 193
            +C+ +   E GR +H L +  G ++ +  VS  L+D+Y+KC     A   F +      
Sbjct: 173 PMCAALAWPETGRAVHGLAVKSG-WDAAPRVSNVLVDMYAKCGEMADAECAFLEAPPGAG 231

Query: 194 RNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE--GVKPTRVTLTIVLLACAELRDLRNGK 251
           RN VSW  M+ G   +        L R MQ E  GV    +T+  VL  C+ L +L   +
Sbjct: 232 RNVVSWNVMLGGYARNGEAGAAFGLLREMQMEERGVPADEITMLSVLPVCSGLPELAKLR 291

Query: 252 AIHGYAYCCGFDFDHHL-SAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQ 310
            +H +    G      +   AL+  Y  C   LH  R +F+    K V  W+++I  ++Q
Sbjct: 292 ELHAFVVRRGLHLTGDMVPNALIAAYGRCGCLLHACR-VFDGICSKMVSSWNALIGAHAQ 350

Query: 311 SGDLSEAMKLFSRMRLE-RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
           +G+ S A++LF  M      +P+  ++ ++L +C     L HG   H +I++ GL  D  
Sbjct: 351 NGEASAAIELFREMTNACGQKPDWFSIGSLLLACGNLKHLLHGKAAHGFILRNGLEKDSF 410

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ--E 427
           I  +L+++Y +CG  + +  +F+ +  +D VSW T+I+GY  +G   E+LQLF EMQ  +
Sbjct: 411 IRVSLLSVYIQCGRESLARVLFDAVEEKDEVSWNTMIAGYSQNGLPGESLQLFREMQSKK 470

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGK 485
            G  P  +   + L AC+    V+  + +    +K     L  + +  +  +D+  K G 
Sbjct: 471 GGHWPSLLAATSALVACSELPAVRLGKEMHCFALKAD---LCEDSFLSSSIIDMYSKCGS 527

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL-IEAEPENAANYTLLSM 544
           ++DA      +  K +    + +++   ++GR + A  L  ++  E    +   Y  L M
Sbjct: 528 VDDARVFFDRLKAKDAVS-WTVMITGYAVNGRGKEAVGLYDKMGREGMEPDGFTYLGLLM 586

Query: 545 VCSESG 550
            C  +G
Sbjct: 587 ACGHAG 592



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 90/201 (44%), Gaps = 9/201 (4%)

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRL--ERIEPNSVTLLAILSSCTRQSFLSHGLGVHCY 358
           W+ ++   S++G  ++A+ +  R+    + + P+  TL   L SC        G  VH  
Sbjct: 33  WNGLLADLSRAGRHADALAILPRLLAASDGVAPDRFTLPPALKSCRGDD----GRQVHAV 88

Query: 359 IMKAGL-NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEE 417
             K GL + D  +GN+L++MY +CG +  + ++F  MA R+ VSW  L++       G E
Sbjct: 89  AAKLGLADGDPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAAVADPRRGLE 148

Query: 418 ALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYV 477
             +  LE       PD  T++ +L  C      +    +    +K    A A       V
Sbjct: 149 LFRDCLEDLGGTAAPDEATLVTVLPMCAALAWPETGRAVHGLAVKSGWDA-APRVSNVLV 207

Query: 478 DLLGKSGKIEDA-CKVVSTMP 497
           D+  K G++ DA C  +   P
Sbjct: 208 DMYAKCGEMADAECAFLEAPP 228


>gi|225438593|ref|XP_002276456.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial [Vitis vinifera]
 gi|296082485|emb|CBI21490.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  331 bits (848), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 193/578 (33%), Positives = 317/578 (54%), Gaps = 6/578 (1%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V++ +  + L L++Q +  +GL  N    PSV KAC+     ++  + +H   +KS   A
Sbjct: 30  VNQGYAHKALLLFRQ-MKQNGLEPNNLTFPSVAKACSKLLNLKYSQI-VHTHVVKSRFQA 87

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D  +  S++ MY K S+   AY LF  MP RD  SWNS+I  F Q GF  R + +F EM 
Sbjct: 88  DLFVQTSVVDMYVKCSQLGFAYNLFSRMPKRDVASWNSMILGFAQLGFVDRVVSLFCEMG 147

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
           + G    +  + G+      + +L++   IH+  I  G  +  V VS   +  Y+KC  +
Sbjct: 148 IEGIRADSVTVIGLTHSALSLKDLKMLESIHSFGIKIG-IDTDVSVSNTWIAAYAKCGEF 206

Query: 182 LIALRVFEQMV--IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLL 239
            +A  VF+ +   ++  VSW +MI+G    +     +  F+ M   G +    T+  +L 
Sbjct: 207 GLAETVFDGIDKGLKTGVSWNSMIAGYAHFEQCSKAVGFFKKMLCGGFRADLSTILSLLS 266

Query: 240 ACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVV 299
           +C +   L +GK IH +    G D D  +   L+ MY +C + +  AR +F+    K  V
Sbjct: 267 SCVQPEVLFHGKLIHAHGIQVGCDSDIQVINTLISMYSKCGD-IGSARYLFDNMLGKTRV 325

Query: 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
            W+++I GY++ GDL EAM LFS M     +P+ VT+++++S C +   L  G  +  Y 
Sbjct: 326 SWTAMIAGYAEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTGALELGKWIDTYA 385

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEAL 419
              GL  ++ + NAL+++Y+KCGS+ ++ ++F  M  +  VSWTTLI+G   +G  +EAL
Sbjct: 386 TANGLKDNLMVCNALIDVYAKCGSMDNARELFYTMPEKSLVSWTTLIAGCALNGEFKEAL 445

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479
            LF +M E G++P+ IT LA+L ACNHAG +++    FN + K  KI   ++HY+C  DL
Sbjct: 446 GLFFQMVELGLKPNHITFLAVLQACNHAGFLEKGWECFNLMTKVYKINPGLDHYSCMADL 505

Query: 480 LGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANY 539
           LG+ G++++A + +  MP KP   I S L+SAC+IH  + + E +A+ L E EP+ A  Y
Sbjct: 506 LGRKGRLKEAFEFIQNMPFKPDVGIWSVLLSACKIHQNVVIGECVAYHLFELEPQTAVPY 565

Query: 540 TLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
             ++ + + +G W     +  +M+     KS G S ++
Sbjct: 566 VQMANIYASAGKWDRVAAIRTMMKCNKAMKSPGKSLVQ 603



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 137/483 (28%), Positives = 240/483 (49%), Gaps = 26/483 (5%)

Query: 81  SAYQLFDEMPYRDTIS-WNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLC 139
           +A Q F+      T++ WNS I      G+  ++L +FR+M   G          +   C
Sbjct: 5   AATQSFNRFSNLWTVAQWNSSITESVNQGYAHKALLLFRQMKQNGLEPNNLTFPSVAKAC 64

Query: 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSW 199
           S++  L+  + +H  V V   F+  +FV T+++D+Y KC     A  +F +M  R+  SW
Sbjct: 65  SKLLNLKYSQIVHTHV-VKSRFQADLFVQTSVVDMYVKCSQLGFAYNLFSRMPKRDVASW 123

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
            +MI G       D  + LF  M  EG++   VT+  +  +   L+DL+  ++IH +   
Sbjct: 124 NSMILGFAQLGFVDRVVSLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLESIHSFGIK 183

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFE--RTKVKDVVIWSSIIRGYSQSGDLSEA 317
            G D D  +S   +  Y +C E    A  +F+     +K  V W+S+I GY+     S+A
Sbjct: 184 IGIDTDVSVSNTWIAAYAKCGE-FGLAETVFDGIDKGLKTGVSWNSMIAGYAHFEQCSKA 242

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
           +  F +M       +  T+L++LSSC +   L HG  +H + ++ G + D+ + N L++M
Sbjct: 243 VGFFKKMLCGGFRADLSTILSLLSSCVQPEVLFHGKLIHAHGIQVGCDSDIQVINTLISM 302

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           YSKCG I S+  +F+ M  +  VSWT +I+GY   G  +EA+ LF  M+  G +PD +T+
Sbjct: 303 YSKCGDIGSARYLFDNMLGKTRVSWTAMIAGYAEKGDLDEAMTLFSAMEAVGEKPDLVTI 362

Query: 438 LAILSACNHAGLVK---------EAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIED 488
           ++++S C   G ++          A  L +N+M    +          +D+  K G +++
Sbjct: 363 ISLMSGCGQTGALELGKWIDTYATANGLKDNLMVCNAL----------IDVYAKCGSMDN 412

Query: 489 ACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE-AEPENAANYTLLSMVCS 547
           A ++  TMP K S    ++L++ C ++G  + A  L  Q++E     N   +  +   C+
Sbjct: 413 ARELFYTMPEK-SLVSWTTLIAGCALNGEFKEALGLFFQMVELGLKPNHITFLAVLQACN 471

Query: 548 ESG 550
            +G
Sbjct: 472 HAG 474


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  331 bits (848), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 196/598 (32%), Positives = 312/598 (52%), Gaps = 29/598 (4%)

Query: 7    YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
            +E +LHL++  L    +   +  L SV  AC++ +     G Q+H   L++G D     +
Sbjct: 414  WELSLHLFRLMLS-ENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNG-DLRTYTN 471

Query: 67   NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
            N+L++MYA+  +   A  LF     +D +SWN++I+  +QN  +  +L     M + G  
Sbjct: 472  NALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVR 531

Query: 127  LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
                 LA ++  CSQ+  L +GR+IH   + +G    + FV TAL+D+Y  C        
Sbjct: 532  PDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRL 591

Query: 187  VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG-VKPTRVTLTIVLLACAELR 245
            VF+ +V R    W A+++G   ++  D  + LF  M  E    P   T   VL AC   +
Sbjct: 592  VFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCK 651

Query: 246  DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
               + + IHGY    GF  D ++  ALM MY      +  ++ IF R   +D+V W+++I
Sbjct: 652  VFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGR-VEISKTIFGRMNKRDIVSWNTMI 710

Query: 306  RGYSQSGDLSEAMKLFSRMRLERIE------------------PNSVTLLAILSSCTRQS 347
             G    G   +A+ L   M+  + E                  PNSVTL+ +L  C   +
Sbjct: 711  TGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALA 770

Query: 348  FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLIS 407
             L  G  +H Y +K  L  DV++G+AL++MY+KCG +  + ++F++M  R+ ++W  LI 
Sbjct: 771  ALGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLIM 830

Query: 408  GYGFHGYGEEALQLFLEMQESG------VEPDAITVLAILSACNHAGLVKEAETLFNNVM 461
             YG HG GEEAL+LF  M   G      + P+ +T +AI +AC+H+G+V E   LF+ + 
Sbjct: 831  AYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMK 890

Query: 462  KEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK-PSTRILSSLVSACRIHGRLEV 520
                +    +HYAC VDLLG+SG++++A ++++TMP         SSL+ ACRIH  +E 
Sbjct: 891  ASHGVEPRGDHYACLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSSLLGACRIHQSVEF 950

Query: 521  AEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIEN 578
             E+ A  L   EP  A++Y L+S + S +G W  A  V + M+  G+ K  G S IE+
Sbjct: 951  GEIAAKHLFVLEPNVASHYVLMSNIYSSAGLWDQALGVRKKMKEMGVRKEPGCSWIEH 1008



 Score =  232 bits (591), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 166/552 (30%), Positives = 274/552 (49%), Gaps = 38/552 (6%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADP---VISNSLISMYAKFSKPESAYQLF 86
            P+V+KA A A      G Q+H    K G  A P    ++NSL++MY K     +A Q+F
Sbjct: 333 FPAVLKAAA-AVHDLCLGKQIHAHVFKFGH-APPSSVAVANSLVNMYGKCGDLTAARQVF 390

Query: 87  DEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQI-GEL 145
           D++P RD +SWNS+I    +   +  SL +FR M        +  L  +   CS + G +
Sbjct: 391 DDIPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGV 450

Query: 146 ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISG 205
            LG+Q+HA  + +G  +L  + + AL+ +Y++      A  +F     ++ VSW  +IS 
Sbjct: 451 RLGKQVHAYTLRNG--DLRTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISS 508

Query: 206 CIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFD 265
              +  ++  +     M  +GV+P  VTL  VL AC++L  LR G+ IH YA   G   +
Sbjct: 509 LSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIE 568

Query: 266 HH-LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM 324
           +  +  AL+ MYC C +     R++F+    + V +W++++ GY+++    +A++LF  M
Sbjct: 569 NSFVGTALVDMYCNCKQP-KKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEM 627

Query: 325 RLE-RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS 383
             E    PN+ T  ++L +C R    S   G+H YI+K G   D  + NALM+MYS+ G 
Sbjct: 628 ISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGR 687

Query: 384 ITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ----------------E 427
           +  S  IF  M  RD VSW T+I+G    G  ++AL L  EMQ                +
Sbjct: 688 VEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDD 747

Query: 428 SGV--EPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
            GV  +P+++T++ +L  C     + + + +    +K+ K+A+ +   +  VD+  K G 
Sbjct: 748 GGVPFKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQ-KLAMDVAVGSALVDMYAKCGC 806

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLI-------EAEPENAAN 538
           +  A +V   MP++ +    + L+ A  +HG+ E A  L   +        E    N   
Sbjct: 807 LNLASRVFDQMPIR-NVITWNVLIMAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVT 865

Query: 539 YTLLSMVCSESG 550
           Y  +   CS SG
Sbjct: 866 YIAIFAACSHSG 877


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  331 bits (848), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 186/573 (32%), Positives = 307/573 (53%), Gaps = 4/573 (0%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           + + + L+ + L   G   N  +  +V+K    A+  +  G  +H    K G D+D  + 
Sbjct: 126 FSEAIGLFSR-LQGEGHELNPFVFSTVLKLLVSAEWAK-LGFSVHACVYKLGFDSDAFVG 183

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
            +LI  Y+     E A Q+FD + Y+D +SW  ++ C+ +N  +  SL++F  M + GF 
Sbjct: 184 TALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFK 243

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
                 A ++  C  +    +G+ +H         E  +FV   L+DLY K      AL+
Sbjct: 244 PNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLE-ELFVGVELIDLYIKSGDVDDALQ 302

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VFE+M   + + W+ MI+    S+  +  I++F  M+R  V P + TL  +L ACA L D
Sbjct: 303 VFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVD 362

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L+ G  IH +    G D +  +S ALM MY +C    +  ++  E     DV  W+++I 
Sbjct: 363 LQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVS-WNTVIV 421

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           GY Q+G+  +A+ LF  M   +++   VT  ++L +C   + L  G  +H   +K   + 
Sbjct: 422 GYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDK 481

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           +  +GNAL++MY+KCG+I  +  +F+ +   D VSW  +ISGY  HG   EAL+ F  M 
Sbjct: 482 NTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESML 541

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
           E+  +PD +T + ILSAC++AGL+   +  F ++++E  I    EHY C V LLG+SG +
Sbjct: 542 ETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRSGHL 601

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546
           + A K+V  +P +PS  +  +L+SAC IH  +E+  + A +++E EPE+ A + LLS + 
Sbjct: 602 DKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGRISAQRVLEIEPEDEATHVLLSNIY 661

Query: 547 SESGNWLGAEEVWRVMRAKGLSKSYGFSRIENE 579
           + +  W     +   M+ KG+ K  G S IEN+
Sbjct: 662 ANARRWGNVASIRTSMKRKGIRKEPGLSWIENQ 694



 Score =  243 bits (619), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 165/532 (31%), Positives = 275/532 (51%), Gaps = 18/532 (3%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           NT I  S++++C         G  LHC  +K G+  D   +N L++ Y K+     A +L
Sbjct: 43  NTYIYGSLLQSCI-RNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKL 101

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL 145
           FDEMP R+T+S+ ++I  ++Q   +  ++ +F  +   G  L   + + ++ L       
Sbjct: 102 FDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWA 161

Query: 146 ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISG 205
           +LG  +HA V   G F+   FV TAL+D YS C +   A +VF+ +  ++ VSWT M++ 
Sbjct: 162 KLGFSVHACVYKLG-FDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVAC 220

Query: 206 CIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFD 265
            ++++ ++  + LF  M+  G KP   T   VL AC  L     GKA+HG A+   +  +
Sbjct: 221 YVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEE 280

Query: 266 HHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR 325
             +   L+ +Y +  + +  A  +FE     DV+ WS +I  Y+QS    EA+++F RMR
Sbjct: 281 LFVGVELIDLYIKSGD-VDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMR 339

Query: 326 LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSIT 385
              + PN  TL ++L +C     L  G  +HC+++K GL+ +V + NALM+MY+KCG + 
Sbjct: 340 RGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRME 399

Query: 386 SSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
           +S Q+F+E      VSW T+I GY   G GE+AL LF +M E  V+   +T  ++L AC 
Sbjct: 400 NSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRAC- 458

Query: 446 HAGLV-----KEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKP 500
            AG+       +  +L    + +K   +        +D+  K G I+DA ++V  M  + 
Sbjct: 459 -AGIAALEPGSQIHSLSVKTIYDKNTVVG----NALIDMYAKCGNIKDA-RLVFDMLREH 512

Query: 501 STRILSSLVSACRIHGRLEVAEMLAHQLIEAE--PENAANYTLLSMVCSESG 550
                ++++S   +HG    A      ++E E  P+      +LS  CS +G
Sbjct: 513 DQVSWNAMISGYSVHGLYGEALKTFESMLETECKPDKVTFVGILS-ACSNAG 563



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 63/123 (51%), Gaps = 3/123 (2%)

Query: 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
           E N+    ++L SC R    + G  +HC I+K G   D+   N L+N Y K  S+  + +
Sbjct: 41  EFNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAK 100

Query: 390 IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI---TVLAILSACNH 446
           +F+EM  R+ VS+ TLI GY       EA+ LF  +Q  G E +     TVL +L +   
Sbjct: 101 LFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEW 160

Query: 447 AGL 449
           A L
Sbjct: 161 AKL 163


>gi|356495419|ref|XP_003516575.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Glycine max]
          Length = 666

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 187/573 (32%), Positives = 325/573 (56%), Gaps = 13/573 (2%)

Query: 11  LHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLI 70
           L+L+ + L       +    P VIKAC         G+ +H    K G D+D  + N+L+
Sbjct: 97  LNLFVEMLGSGRTLPDKFTYPVVIKACGDLSLID-VGVGIHGQTFKFGYDSDTFVQNTLL 155

Query: 71  SMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE 130
           +MY    + E+A  +FD M  R  ISWN++IN + +N     ++ ++  M   G      
Sbjct: 156 AMYMNAGEKEAAQLVFDPMQERTVISWNTMINGYFRNNCAEDAVNVYGRMMDVGVEPDCA 215

Query: 131 LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH----WLIALR 186
            +  ++  C  +  +ELGR++H LV   G F  ++ V  AL+D+Y KC      WL+A  
Sbjct: 216 TVVSVLPACGLLKNVELGREVHTLVQEKG-FWGNIVVRNALVDMYVKCGQMKEAWLLA-- 272

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
             + M  ++ V+WT +I+G I + +  + + L   MQ EGVKP  V++  +L AC  L  
Sbjct: 273 --KGMDDKDVVTWTTLINGYILNGDARSALMLCGMMQCEGVKPNSVSIASLLSACGSLVY 330

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L +GK +H +A     + +  +  AL++MY +C    + +  +F  T  K    W++++ 
Sbjct: 331 LNHGKCLHAWAIRQKIESEVIVETALINMYAKCNCG-NLSYKVFMGTSKKRTAPWNALLS 389

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           G+ Q+    EA++LF +M ++ ++P+  T  ++L +    + L   + +HCY++++G  +
Sbjct: 390 GFIQNRLAREAIELFKQMLVKDVQPDHATFNSLLPAYAILADLQQAMNIHCYLIRSGFLY 449

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFN--EMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
            + + + L+++YSKCGS+  +HQIFN   +  +D + W+ +I+ YG HG+G+ A++LF +
Sbjct: 450 RLEVASILVDIYSKCGSLGYAHQIFNIISLKDKDIIIWSAIIAAYGKHGHGKMAVKLFNQ 509

Query: 425 MQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSG 484
           M +SGV+P+ +T  ++L AC+HAGLV E  +LFN ++K+ +I   ++HY C +DLLG++G
Sbjct: 510 MVQSGVKPNHVTFTSVLHACSHAGLVNEGFSLFNFMLKQHQIISHVDHYTCMIDLLGRAG 569

Query: 485 KIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSM 544
           ++ DA  ++ TMP+ P+  +  +L+ AC IH  +E+ E+ A    + EPEN  NY LL+ 
Sbjct: 570 RLNDAYNLIRTMPITPNHAVWGALLGACVIHENVELGEVAARWTFKLEPENTGNYVLLAK 629

Query: 545 VCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           + +  G W  AE V  ++   GL K    S IE
Sbjct: 630 LYAAVGRWGDAERVRDMVNEVGLRKLPAHSLIE 662



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 134/505 (26%), Positives = 250/505 (49%), Gaps = 6/505 (1%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           +LH   L  G  +   + + L + YA+      A  LFD++      SWN+++  + Q G
Sbjct: 32  RLHALILTLGIFSSSNLCSKLATTYAQCHHASYASHLFDKLSQPCLFSWNAMMRMYVQIG 91

Query: 109 FYVRSLEMFREMYLCGFVLKAELL-AGIISLCSQIGELELGRQIHALVIVDGSFELSVFV 167
               +L +F EM   G  L  +     +I  C  +  +++G  IH      G ++   FV
Sbjct: 92  RPFDALNLFVEMLGSGRTLPDKFTYPVVIKACGDLSLIDVGVGIHGQTFKFG-YDSDTFV 150

Query: 168 STALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV 227
              LL +Y        A  VF+ M  R  +SW  MI+G   +   +  ++++  M   GV
Sbjct: 151 QNTLLAMYMNAGEKEAAQLVFDPMQERTVISWNTMINGYFRNNCAEDAVNVYGRMMDVGV 210

Query: 228 KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPAR 287
           +P   T+  VL AC  L+++  G+ +H      GF  +  +  AL+ MY +C + +  A 
Sbjct: 211 EPDCATVVSVLPACGLLKNVELGREVHTLVQEKGFWGNIVVRNALVDMYVKCGQ-MKEAW 269

Query: 288 IIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQS 347
           ++ +    KDVV W+++I GY  +GD   A+ L   M+ E ++PNSV++ ++LS+C    
Sbjct: 270 LLAKGMDDKDVVTWTTLINGYILNGDARSALMLCGMMQCEGVKPNSVSIASLLSACGSLV 329

Query: 348 FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLIS 407
           +L+HG  +H + ++  +  +V +  AL+NMY+KC     S+++F   + +    W  L+S
Sbjct: 330 YLNHGKCLHAWAIRQKIESEVIVETALINMYAKCNCGNLSYKVFMGTSKKRTAPWNALLS 389

Query: 408 GYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIA 467
           G+  +    EA++LF +M    V+PD  T  ++L A      +++A  +   +++   + 
Sbjct: 390 GFIQNRLAREAIELFKQMLVKDVQPDHATFNSLLPAYAILADLQQAMNIHCYLIRSGFL- 448

Query: 468 LAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACR-IHGRLEVAEMLAH 526
             +E  +  VD+  K G +  A ++ + + +K    I+ S + A    HG  ++A  L +
Sbjct: 449 YRLEVASILVDIYSKCGSLGYAHQIFNIISLKDKDIIIWSAIIAAYGKHGHGKMAVKLFN 508

Query: 527 QLIEAEPE-NAANYTLLSMVCSESG 550
           Q++++  + N   +T +   CS +G
Sbjct: 509 QMVQSGVKPNHVTFTSVLHACSHAG 533


>gi|224085073|ref|XP_002307479.1| predicted protein [Populus trichocarpa]
 gi|222856928|gb|EEE94475.1| predicted protein [Populus trichocarpa]
          Length = 1026

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 187/557 (33%), Positives = 305/557 (54%), Gaps = 5/557 (0%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G Y +     S++ ACA  + +   G QLH   +K+   ++  + N+L+ MYAK    E 
Sbjct: 423 GFYPDDFTYSSILSACACLK-YLDLGHQLHSVIIKNKFASNLFVGNALVDMYAKSGALED 481

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A Q F+ +  RD +SWN II  + Q    V +  +FR M L G +     LA I+S C+ 
Sbjct: 482 ARQQFELIRNRDNVSWNVIIVGYVQEEDEVEAFHLFRRMNLLGILPDEVSLASILSACAS 541

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
           +  LE G+Q+H L +  G  E  ++  ++L+D+Y+KC     A ++   M  R+ VS  A
Sbjct: 542 VRGLEQGKQVHCLSVKTGQ-ETKLYSGSSLIDMYAKCGAIDSAHKILACMPERSVVSMNA 600

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           +I+G     N +  ++LFR M  EG+  T +T   +L AC E + L  G+ IH      G
Sbjct: 601 LIAGYAQI-NLEQAVNLFRDMLVEGINSTEITFASLLDACHEQQKLNLGRQIHSLILKMG 659

Query: 262 FDFDHH-LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
              D   L  +L+ MY         + +  E +  K  V+W+++I G SQ+     A++L
Sbjct: 660 LQLDDEFLGVSLLGMYMNSLRTTDASVLFSEFSNPKSAVVWTAMISGLSQNDCSVVALQL 719

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
           +  MR   + P+  T ++ L +C   S +  G   H  I   G + D    +AL++MY+K
Sbjct: 720 YKEMRSCNVLPDQATFVSALRACAVVSSIKDGTETHSLIFHTGFDSDELTSSALVDMYAK 779

Query: 381 CGSITSSHQIFNEMA-ARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           CG + SS Q+F EM+  +D +SW ++I G+  +GY E+AL++F EM++S V PD +T L 
Sbjct: 780 CGDVKSSMQVFKEMSRKKDVISWNSMIVGFAKNGYAEDALRVFDEMKQSHVTPDDVTFLG 839

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           +L+AC+H+G V E   +F+ ++    +    +H AC VDLLG+ G +++A + ++ +  +
Sbjct: 840 VLTACSHSGRVSEGRLIFDMMVNLYGMQPRADHCACMVDLLGRWGSLKEAEEFINKLNFE 899

Query: 500 PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVW 559
           P  ++ ++++ ACRIHG     +  A +LIE EP+N++ Y LLS + + SGNW     + 
Sbjct: 900 PDAKVWATMLGACRIHGDDIRGQQAAEKLIELEPQNSSPYVLLSNIYAASGNWDEVNTLR 959

Query: 560 RVMRAKGLSKSYGFSRI 576
           R MR KG+ K  G S I
Sbjct: 960 REMREKGVKKLPGCSWI 976



 Score =  232 bits (591), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 163/543 (30%), Positives = 277/543 (51%), Gaps = 18/543 (3%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           Q +  +G+ S  + L SV+ A A +     FGL +H  ALK G  ++  + +SL+SMYAK
Sbjct: 316 QNMRKAGIKSTRSTLGSVLSAIA-SLAALDFGLLVHAEALKQGLHSNVYVGSSLVSMYAK 374

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
             K E+A ++FD +  ++ + WN+++  + QNG+    +E+F  M  CGF       + I
Sbjct: 375 CGKMEAAKKVFDTLNEQNVVLWNAMLGGYVQNGYANEVMELFFNMKSCGFYPDDFTYSSI 434

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           +S C+ +  L+LG Q+H+ VI+   F  ++FV  AL+D+Y+K      A + FE +  R+
Sbjct: 435 LSACACLKYLDLGHQLHS-VIIKNKFASNLFVGNALVDMYAKSGALEDARQQFELIRNRD 493

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
            VSW  +I G +  ++      LFR M   G+ P  V+L  +L ACA +R L  GK +H 
Sbjct: 494 NVSWNVIIVGYVQEEDEVEAFHLFRRMNLLGILPDEVSLASILSACASVRGLEQGKQVHC 553

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
            +   G +   +  ++L+ MY +C  A+  A  I      + VV  +++I GY+Q  +L 
Sbjct: 554 LSVKTGQETKLYSGSSLIDMYAKCG-AIDSAHKILACMPERSVVSMNALIAGYAQI-NLE 611

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS-IGNAL 374
           +A+ LF  M +E I    +T  ++L +C  Q  L+ G  +H  I+K GL  D   +G +L
Sbjct: 612 QAVNLFRDMLVEGINSTEITFASLLDACHEQQKLNLGRQIHSLILKMGLQLDDEFLGVSL 671

Query: 375 MNMYSKCGSITSSHQIFNEMA-ARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPD 433
           + MY      T +  +F+E +  +  V WT +ISG   +     ALQL+ EM+   V PD
Sbjct: 672 LGMYMNSLRTTDASVLFSEFSNPKSAVVWTAMISGLSQNDCSVVALQLYKEMRSCNVLPD 731

Query: 434 AITVLAILSACNHAGLVKEA-ET---LFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
             T ++ L AC     +K+  ET   +F+      ++       +  VD+  K G ++ +
Sbjct: 732 QATFVSALRACAVVSSIKDGTETHSLIFHTGFDSDELT-----SSALVDMYAKCGDVKSS 786

Query: 490 CKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE--PENAANYTLLSMVCS 547
            +V   M  K      +S++     +G  E A  +  ++ ++   P++     +L+  CS
Sbjct: 787 MQVFKEMSRKKDVISWNSMIVGFAKNGYAEDALRVFDEMKQSHVTPDDVTFLGVLT-ACS 845

Query: 548 ESG 550
            SG
Sbjct: 846 HSG 848



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 141/459 (30%), Positives = 232/459 (50%), Gaps = 9/459 (1%)

Query: 56  KSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLE 115
           K G + D V   ++I+ Y    + ++A  LF  MP R+ ++WN +I+   + G+ V ++E
Sbjct: 254 KVGQEPDQVAFVTVINAYVDLGRLDNASDLFSRMPNRNVVAWNLMISGHAKGGYGVEAIE 313

Query: 116 MFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLY 175
            F+ M   G       L  ++S  + +  L+ G  +HA  +  G    +V+V ++L+ +Y
Sbjct: 314 FFQNMRKAGIKSTRSTLGSVLSAIASLAALDFGLLVHAEALKQG-LHSNVYVGSSLVSMY 372

Query: 176 SKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLT 235
           +KC     A +VF+ +  +N V W AM+ G + +   +  ++LF  M+  G  P   T +
Sbjct: 373 AKCGKMEAAKKVFDTLNEQNVVLWNAMLGGYVQNGYANEVMELFFNMKSCGFYPDDFTYS 432

Query: 236 IVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV 295
            +L ACA L+ L  G  +H       F  +  +  AL+ MY + + AL  AR  FE  + 
Sbjct: 433 SILSACACLKYLDLGHQLHSVIIKNKFASNLFVGNALVDMYAK-SGALEDARQQFELIRN 491

Query: 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV 355
           +D V W+ II GY Q  D  EA  LF RM L  I P+ V+L +ILS+C     L  G  V
Sbjct: 492 RDNVSWNVIIVGYVQEEDEVEAFHLFRRMNLLGILPDEVSLASILSACASVRGLEQGKQV 551

Query: 356 HCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYG 415
           HC  +K G    +  G++L++MY+KCG+I S+H+I   M  R  VS   LI+GY      
Sbjct: 552 HCLSVKTGQETKLYSGSSLIDMYAKCGAIDSAHKILACMPERSVVSMNALIAGYAQINL- 610

Query: 416 EEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC 475
           E+A+ LF +M   G+    IT  ++L AC+    +     + + ++   K+ L ++    
Sbjct: 611 EQAVNLFRDMLVEGINSTEITFASLLDACHEQQKLNLGRQIHSLIL---KMGLQLDDEFL 667

Query: 476 YVDLLG---KSGKIEDACKVVSTMPMKPSTRILSSLVSA 511
            V LLG    S +  DA  + S      S  + ++++S 
Sbjct: 668 GVSLLGMYMNSLRTTDASVLFSEFSNPKSAVVWTAMISG 706



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 124/440 (28%), Positives = 223/440 (50%), Gaps = 38/440 (8%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           +H  +LK G  +  V+ N ++ +YAK +  + A + F ++  +D ++WNSI++  ++ GF
Sbjct: 81  IHAQSLKLGFWSKGVLGNVIVDLYAKCADVDYAERAFKQLEDKDILAWNSILSMHSKQGF 140

Query: 110 YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVST 169
               ++ F  ++  G        A ++S C+++  ++ GRQ+H  V+  G FE   +   
Sbjct: 141 PHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEMVKCGRQVHCNVVKMG-FESISYCEG 199

Query: 170 ALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKP 229
           AL+ +Y+KC+    A  +F+  V  ++VSWT+MI G I     +  + +F+ M++ G +P
Sbjct: 200 ALIGMYAKCNFLTDARSIFDGAVELDKVSWTSMIGGYIKVGLPEEAVKVFQEMEKVGQEP 259

Query: 230 TRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARII 289
            +V    V+ A  +L  L N                                    A  +
Sbjct: 260 DQVAFVTVINAYVDLGRLDN------------------------------------ASDL 283

Query: 290 FERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFL 349
           F R   ++VV W+ +I G+++ G   EA++ F  MR   I+    TL ++LS+    + L
Sbjct: 284 FSRMPNRNVVAWNLMISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLSAIASLAAL 343

Query: 350 SHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGY 409
             GL VH   +K GL+ +V +G++L++MY+KCG + ++ ++F+ +  ++ V W  ++ GY
Sbjct: 344 DFGLLVHAEALKQGLHSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNEQNVVLWNAMLGGY 403

Query: 410 GFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA 469
             +GY  E ++LF  M+  G  PD  T  +ILSAC     +     L + ++K  K A  
Sbjct: 404 VQNGYANEVMELFFNMKSCGFYPDDFTYSSILSACACLKYLDLGHQLHSVIIK-NKFASN 462

Query: 470 IEHYACYVDLLGKSGKIEDA 489
           +      VD+  KSG +EDA
Sbjct: 463 LFVGNALVDMYAKSGALEDA 482



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 144/502 (28%), Positives = 240/502 (47%), Gaps = 45/502 (8%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           M SK  +   +  Y   L  SG++ N      V+ +CA  +  +  G Q+HC  +K G +
Sbjct: 134 MHSKQGFPHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEMVK-CGRQVHCNVVKMGFE 192

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
           +      +LI MYAK +    A  +FD     D +SW S+I  + + G    ++++F+EM
Sbjct: 193 SISYCEGALIGMYAKCNFLTDARSIFDGAVELDKVSWTSMIGGYIKVGLPEEAVKVFQEM 252

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
              G                     +   Q+  + +++       +V    LD  S    
Sbjct: 253 EKVG---------------------QEPDQVAFVTVINA------YVDLGRLDNASD--- 282

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
                 +F +M  RN V+W  MISG          I+ F+ M++ G+K TR TL  VL A
Sbjct: 283 ------LFSRMPNRNVVAWNLMISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLSA 336

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
            A L  L  G  +H  A   G   + ++ ++L+ MY +C + +  A+ +F+    ++VV+
Sbjct: 337 IASLAALDFGLLVHAEALKQGLHSNVYVGSSLVSMYAKCGK-MEAAKKVFDTLNEQNVVL 395

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           W++++ GY Q+G  +E M+LF  M+     P+  T  +ILS+C    +L  G  +H  I+
Sbjct: 396 WNAMLGGYVQNGYANEVMELFFNMKSCGFYPDDFTYSSILSACACLKYLDLGHQLHSVII 455

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
           K     ++ +GNAL++MY+K G++  + Q F  +  RD VSW  +I GY       EA  
Sbjct: 456 KNKFASNLFVGNALVDMYAKSGALEDARQQFELIRNRDNVSWNVIIVGYVQEEDEVEAFH 515

Query: 421 LFLEMQESGVEPDAITVLAILSACNHA-GLV--KEAETLFNNVMKEKKIALAIEHYACYV 477
           LF  M   G+ PD +++ +ILSAC    GL   K+   L     +E K+       +  +
Sbjct: 516 LFRRMNLLGILPDEVSLASILSACASVRGLEQGKQVHCLSVKTGQETKLYSG----SSLI 571

Query: 478 DLLGKSGKIEDACKVVSTMPMK 499
           D+  K G I+ A K+++ MP +
Sbjct: 572 DMYAKCGAIDSAHKILACMPER 593



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 157/351 (44%), Gaps = 48/351 (13%)

Query: 151 IHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQ 210
           IHA  +  G +   V +   ++DLY+KC     A R F+Q+  ++ ++W +++S      
Sbjct: 81  IHAQSLKLGFWSKGV-LGNVIVDLYAKCADVDYAERAFKQLEDKDILAWNSILSMHSKQG 139

Query: 211 NYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSA 270
                +  F  +   GV P   T  IVL +CA L  ++ G+ +H      GF+   +   
Sbjct: 140 FPHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEMVKCGRQVHCNVVKMGFESISYCEG 199

Query: 271 ALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE 330
           AL+ MY +C   L  AR IF+     D V W+S+I GY + G   EA+K+F  M     E
Sbjct: 200 ALIGMYAKCN-FLTDARSIFDGAVELDKVSWTSMIGGYIKVGLPEEAVKVFQEMEKVGQE 258

Query: 331 PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQI 390
           P+ V  + ++                                   N Y   G + ++  +
Sbjct: 259 PDQVAFVTVI-----------------------------------NAYVDLGRLDNASDL 283

Query: 391 FNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHA--- 447
           F+ M  R+ V+W  +ISG+   GYG EA++ F  M+++G++    T+ ++LSA       
Sbjct: 284 FSRMPNRNVVAWNLMISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLSAIASLAAL 343

Query: 448 --GLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
             GL+  AE L   +     +  ++      V +  K GK+E A KV  T+
Sbjct: 344 DFGLLVHAEALKQGLHSNVYVGSSL------VSMYAKCGKMEAAKKVFDTL 388



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 111/217 (51%), Gaps = 1/217 (0%)

Query: 251 KAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQ 310
           K IH  +   GF     L   ++ +Y +C +  +  R  F++ + KD++ W+SI+  +S+
Sbjct: 79  KIIHAQSLKLGFWSKGVLGNVIVDLYAKCADVDYAERA-FKQLEDKDILAWNSILSMHSK 137

Query: 311 SGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSI 370
            G     +K F  +    + PN  T   +LSSC R   +  G  VHC ++K G       
Sbjct: 138 QGFPHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEMVKCGRQVHCNVVKMGFESISYC 197

Query: 371 GNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV 430
             AL+ MY+KC  +T +  IF+     D VSWT++I GY   G  EEA+++F EM++ G 
Sbjct: 198 EGALIGMYAKCNFLTDARSIFDGAVELDKVSWTSMIGGYIKVGLPEEAVKVFQEMEKVGQ 257

Query: 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIA 467
           EPD +  + +++A    G +  A  LF+ +     +A
Sbjct: 258 EPDQVAFVTVINAYVDLGRLDNASDLFSRMPNRNVVA 294


>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  330 bits (847), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 183/563 (32%), Positives = 308/563 (54%), Gaps = 6/563 (1%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           E+   G++ +      +++ C    + +  G  +H   +  G  +   +S +L++MYAK 
Sbjct: 161 EMQSQGIFPDQFAYSGILQICIGLDSIE-LGNMVHAQIVIRGFTSHTFVSTALLNMYAKL 219

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
            + E +Y++F+ M   + +SWN++I  FT N  Y+ + ++F  M   G    A+   G+ 
Sbjct: 220 QEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVA 279

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI--R 194
                + ++   +++    +  G  + +  V TAL+D+ SKC     A  +F    I  R
Sbjct: 280 KAIGMLRDVNKAKEVSGYALELG-VDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCR 338

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
               W AMISG + S   +  ++LF  M +  +     T   V  A A L+ L  GK +H
Sbjct: 339 FNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVH 398

Query: 255 GYAYCCGFDFDH-HLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGD 313
             A   G + ++  +S A+ + Y +C  +L   R +F R + +D++ W+S++  YSQ  +
Sbjct: 399 ARAIKSGLEVNYVSISNAVANAYAKCG-SLEDVRKVFNRMEDRDLISWTSLVTAYSQCSE 457

Query: 314 LSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNA 373
             +A+++FS MR E I PN  T  ++L SC     L +G  VH  I K GL+ D  I +A
Sbjct: 458 WDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESA 517

Query: 374 LMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPD 433
           L++MY+KCG +  + ++FN ++  D VSWT +I+G+  HG  ++ALQLF  M + GVEP+
Sbjct: 518 LVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPN 577

Query: 434 AITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVV 493
           A+T L +L AC+H GLV+E    F  + K   +   +EHYAC VDLL + G + DA + +
Sbjct: 578 AVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFI 637

Query: 494 STMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWL 553
           S MP++P+  +  +L+ ACR+HG +E+ E+ A +++  + EN+A Y LLS    ESG++ 
Sbjct: 638 SRMPVEPNEMVWQTLLGACRVHGNVELGELAAQKILSFKAENSATYVLLSNTYIESGSYK 697

Query: 554 GAEEVWRVMRAKGLSKSYGFSRI 576
               +  VM+ +G+ K  G S I
Sbjct: 698 DGLSLRHVMKEQGVKKEPGCSWI 720



 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 158/517 (30%), Positives = 265/517 (51%), Gaps = 19/517 (3%)

Query: 64  VISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC 123
           V+ N +   Y+K S  ++A +LFD+M  R+T SW  +I    +NG ++   E F EM   
Sbjct: 106 VLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQ 165

Query: 124 GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
           G        +GI+ +C  +  +ELG  +HA +++ G F    FVSTALL++Y+K      
Sbjct: 166 GIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRG-FTSHTFVSTALLNMYAKLQEIED 224

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
           + +VF  M   N VSW AMI+G   +  Y    DLF  M  EGV P   T   V  A   
Sbjct: 225 SYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGM 284

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV--KDVVIW 301
           LRD+   K + GYA   G D +  +  AL+ M  +C  +L  AR IF    +  +    W
Sbjct: 285 LRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCG-SLQEARSIFNSHFITCRFNAPW 343

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           +++I GY +SG   +A++LF++M    I  +  T  ++ ++      LS G  VH   +K
Sbjct: 344 NAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIK 403

Query: 362 AGLNFD-VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
           +GL  + VSI NA+ N Y+KCGS+    ++FN M  RD +SWT+L++ Y      ++A++
Sbjct: 404 SGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIE 463

Query: 421 LFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEH--YACYVD 478
           +F  M+  G+ P+  T  ++L +C +  L++  + +   +    K+ L ++    +  VD
Sbjct: 464 IFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIIC---KVGLDMDKCIESALVD 520

Query: 479 LLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE--AEPENA 536
           +  K G + DA KV + +     T   +++++    HG ++ A  L  ++++   EP NA
Sbjct: 521 MYAKCGCLGDAKKVFNRIS-NADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEP-NA 578

Query: 537 ANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGF 573
             +  +   CS  G      + +++M+     K+YG 
Sbjct: 579 VTFLCVLFACSHGGLVEEGLQYFKLMK-----KTYGL 610



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/405 (25%), Positives = 182/405 (44%), Gaps = 39/405 (9%)

Query: 175 YSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTL 234
           YSKC     A R+F+QM  RN  SWT +I+G  ++  +  G + F  MQ +G+ P +   
Sbjct: 115 YSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAY 174

Query: 235 TIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTK 294
           + +L  C  L  +  G  +H      GF     +S AL++MY +  E     ++    T+
Sbjct: 175 SGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTE 234

Query: 295 VKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG 354
           V +VV W+++I G++ +    +A  LF RM  E + P++ T + +  +      ++    
Sbjct: 235 V-NVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKE 293

Query: 355 VHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNE--MAARDFVSWTTLISGYGFH 412
           V  Y ++ G++ +  +G AL++M SKCGS+  +  IFN   +  R    W  +ISGY   
Sbjct: 294 VSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRS 353

Query: 413 GYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEH 472
           G+ E+AL+LF +M ++ +  D  T  ++ +A      +   + +    +K       +  
Sbjct: 354 GFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSI 413

Query: 473 YACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE 532
                +   K G +ED  KV + M                                   E
Sbjct: 414 SNAVANAYAKCGSLEDVRKVFNRM-----------------------------------E 438

Query: 533 PENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKS-YGFSRI 576
             +  ++T L    S+   W  A E++  MRA+G++ + + FS +
Sbjct: 439 DRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSV 483



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 102/213 (47%), Gaps = 5/213 (2%)

Query: 234 LTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH---LSAALMHMYCECTEALHPARIIF 290
           L  +L  C + R L+  K +HG+     F  +HH   L   + H Y +C++     R+ F
Sbjct: 71  LVDLLRDCVDARFLKQAKTVHGFLLKSKFS-NHHSLVLLNHVAHAYSKCSDIDAACRL-F 128

Query: 291 ERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLS 350
           ++   ++   W+ +I G +++G   +  + F  M+ + I P+      IL  C     + 
Sbjct: 129 DQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIE 188

Query: 351 HGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYG 410
            G  VH  I+  G      +  AL+NMY+K   I  S+++FN M   + VSW  +I+G+ 
Sbjct: 189 LGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFT 248

Query: 411 FHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
            +    +A  LFL M   GV PDA T + +  A
Sbjct: 249 SNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKA 281


>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 820

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 187/560 (33%), Positives = 309/560 (55%), Gaps = 12/560 (2%)

Query: 26  NTAILP------SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKP 79
           N+ ILP      ++I++C    + +  G  +H   +  G      +S SL++MYAK    
Sbjct: 214 NSGILPDKFAYSAIIQSCIGLDSLE-LGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSI 272

Query: 80  ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLC 139
           E +Y +F+ M   + +SWN++I+  T NG ++ + ++F  M           L  +    
Sbjct: 273 EDSYWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAV 332

Query: 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS- 198
            ++ ++ +G+++       G  E +V V TAL+D+YSKC     A  VF+   I   V+ 
Sbjct: 333 GKLVDVNMGKEVQNCASELG-IEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNT 391

Query: 199 -WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
            W AMISG   S      ++L+  M + G+     T   V  A A  + L+ G+ +HG  
Sbjct: 392 PWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMV 451

Query: 258 YCCGFDF-DHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
             CG D     ++ A+   Y +C   L   R +F+R + +D+V W++++  YSQS    E
Sbjct: 452 LKCGLDLMVVSVNNAIADAYSKCG-FLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEE 510

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
           A+  F  MR E   PN  T  ++L SC    FL +G  VH  + KAGL+ +  I +AL++
Sbjct: 511 ALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALID 570

Query: 377 MYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAIT 436
           MY+KCGSIT + ++F++++  D VSWT +ISGY  HG  E+ALQLF  M+ SG++ +A+T
Sbjct: 571 MYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVT 630

Query: 437 VLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
           +L +L AC+H G+V+E    F  +     +   +EHYAC +DLLG+ G+++DA + +  M
Sbjct: 631 LLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKM 690

Query: 497 PMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAE 556
           PM+P+  +  +L+  CR+HG +E+ E+ A +++   PE +A Y LLS    E+G++    
Sbjct: 691 PMEPNEMVWQTLLGGCRVHGNVELGEIAARKILSIRPEYSATYVLLSNTYIETGSYEDGL 750

Query: 557 EVWRVMRAKGLSKSYGFSRI 576
            +  VM+ +G+ K  G+S I
Sbjct: 751 SLRNVMKDQGVKKEPGYSWI 770



 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 169/540 (31%), Positives = 264/540 (48%), Gaps = 23/540 (4%)

Query: 24  YSNTAI--LPSVIKACAYAQTHQHFGLQLHCTALKSG-SDAD-PVISNSLISMYAKFSKP 79
           Y  T +  L  V++ CA   + +     +H   LKS   D D  V+ N    +Y+K S+ 
Sbjct: 113 YQQTQVQDLIDVLRDCAEKGSIRE-AKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEF 171

Query: 80  ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLC 139
            +A  +FDEMP R+  SW  +I   T++G +    + F EM   G +      + II  C
Sbjct: 172 RAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSC 231

Query: 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSW 199
             +  LELG+ +HA +++ G F   +FVST+LL++Y+K      +  VF  M   N+VSW
Sbjct: 232 IGLDSLELGKMVHAQIVMRG-FATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSW 290

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
            AMISGC  +  +    DLF  M+     P   TL  V  A  +L D+  GK +   A  
Sbjct: 291 NAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASE 350

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVV--IWSSIIRGYSQSGDLSEA 317
            G + +  +  AL+ MY +C  +LH AR +F+   +   V   W+++I GYSQSG   EA
Sbjct: 351 LGIEGNVLVGTALIDMYSKCG-SLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEA 409

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF-DVSIGNALMN 376
           ++L+ +M    I  +  T  ++ ++      L  G  VH  ++K GL+   VS+ NA+ +
Sbjct: 410 LELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIAD 469

Query: 377 MYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAIT 436
            YSKCG +    ++F+ M  RD VSWTTL++ Y     GEEAL  F  M+E G  P+  T
Sbjct: 470 AYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFT 529

Query: 437 VLAILSACNHAGLVKEAETLFNNVMK-----EKKIALAIEHYACYVDLLGKSGKIEDACK 491
             ++L +C     ++    +   + K     EK I  A+      +D+  K G I +A K
Sbjct: 530 FSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESAL------IDMYAKCGSITEAGK 583

Query: 492 VVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL-IEAEPENAANYTLLSMVCSESG 550
           V   +   P     ++++S    HG +E A  L  ++ +     NA     +   CS  G
Sbjct: 584 VFDKIS-NPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGG 642



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 132/301 (43%), Gaps = 10/301 (3%)

Query: 198 SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
           S TA  S  +  +N    I +    Q+  V+     L  VL  CAE   +R  KA+HG  
Sbjct: 89  SQTAKKSKIVVGRNRPESIGISETYQQTQVQD----LIDVLRDCAEKGSIREAKAVHGLV 144

Query: 258 YCCGFDFDHHLSAAL---MHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
               F+ D  L        H+Y +C+E    A  +F+    ++V  W+ +I G ++ G  
Sbjct: 145 LKSNFE-DKDLMVLFNHAAHVYSKCSE-FRAACGVFDEMPQRNVFSWTVMIVGSTEHGLF 202

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
            +  K F  M    I P+     AI+ SC     L  G  VH  I+  G    + +  +L
Sbjct: 203 FDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSL 262

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           +NMY+K GSI  S+ +FN M   + VSW  +ISG   +G   EA  LF+ M+     P+ 
Sbjct: 263 LNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNM 322

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS 494
            T++++  A      V   + +  N   E  I   +      +D+  K G + DA  V  
Sbjct: 323 YTLVSVSKAVGKLVDVNMGKEV-QNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFD 381

Query: 495 T 495
           T
Sbjct: 382 T 382


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 175/559 (31%), Positives = 312/559 (55%), Gaps = 4/559 (0%)

Query: 23  LYSNTAILPSVIKACAYAQTHQ-HFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           +  +T  L  VI+   YA+T +   G QLH   + +G      ++N L++MY+K  + + 
Sbjct: 1   MLRDTNALAHVIQT--YAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDH 58

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A +LFD MP R+ +SW ++I+  +QN  +  ++  F  M +CG V      +  I  C+ 
Sbjct: 59  ALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACAS 118

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
           +G +E+G+Q+H L +  G     +FV + L D+YSKC     A +VFE+M  ++EVSWTA
Sbjct: 119 LGSIEMGKQMHCLALKFG-IGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTA 177

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           MI G      ++  +  F+ M  E V   +  L   L AC  L+  + G+++H      G
Sbjct: 178 MIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLG 237

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
           F+ D  +  AL  MY +  +    + +    ++ ++VV ++ +I GY ++  + + + +F
Sbjct: 238 FESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVF 297

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
             +R + IEPN  T  +++ +C  Q+ L  G  +H  +MK   + D  + + L++MY KC
Sbjct: 298 VELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKC 357

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
           G +  + Q F+E+     ++W +L+S +G HG G++A+++F  M + GV+P+AIT +++L
Sbjct: 358 GLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLL 417

Query: 442 SACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPS 501
           + C+HAGLV+E    F ++ K   +    EHY+C +DLLG++G++++A + ++ MP +P+
Sbjct: 418 TGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPN 477

Query: 502 TRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRV 561
                S + ACRIHG  E+ ++ A +L++ EP+N+    LLS + +    W     V   
Sbjct: 478 AFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMR 537

Query: 562 MRAKGLSKSYGFSRIENEY 580
           MR   + K  G+S ++  Y
Sbjct: 538 MRDGNVKKLPGYSWVDVGY 556



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 66/132 (50%), Gaps = 1/132 (0%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           EL   G+  N     S+IKACA  Q     G QLH   +K   D DP +S+ L+ MY K 
Sbjct: 299 ELRRQGIEPNEFTFSSLIKACA-NQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKC 357

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
              E A Q FDE+     I+WNS+++ F Q+G    ++++F  M   G    A     ++
Sbjct: 358 GLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLL 417

Query: 137 SLCSQIGELELG 148
           + CS  G +E G
Sbjct: 418 TGCSHAGLVEEG 429


>gi|449439011|ref|XP_004137281.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Cucumis sativus]
          Length = 787

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 184/558 (32%), Positives = 312/558 (55%), Gaps = 5/558 (0%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V K F+   L ++   +     + +    P VIKAC+   +  + G+ +H  AL SG  +
Sbjct: 159 VDKGFHFDALRVFDSMICSGKCWPDKYTFPLVIKACS-VMSMLNVGVLIHGRALVSGFSS 217

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           +  + NSL++MY    K   A Q+F+ M  R  +SWN++I+ + QNG    +L +F  M 
Sbjct: 218 NMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTMISGWFQNGRPEEALAVFNSMM 277

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
                  +  +   +  C  + ELELG ++H LV      +  + V  AL+D+YS+C   
Sbjct: 278 DARVEPDSATIVSALPSCGHLKELELGIKVHKLV-QKNHLQEKIEVRNALVDMYSRCGGM 336

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             A  VF +   ++ ++WT+MI+G I + N  + + L  AMQ +GV P  VTL  +L AC
Sbjct: 337 DEASLVFAETKEKDVITWTSMINGYIMNGNAKSALALCPAMQLDGVVPNAVTLASLLSAC 396

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A L  L+ GK++H +      D D  +  AL+ MY +C    +  ++ F +T +K  V W
Sbjct: 397 ASLCCLKQGKSLHAWVMRKKLDSDVLVVTALIDMYAKCNAVSYSFQV-FAKTSMKRTVPW 455

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           ++++ G   +    EA+ LF  M +E +E N  T  +++ +    + L   + +H Y+++
Sbjct: 456 NALLSGLIHNELAREAVGLFKSMLIEEVEANHATFNSVIPAYAILADLKQVMNLHSYLVR 515

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA--ARDFVSWTTLISGYGFHGYGEEAL 419
           +G    +++   L++MYSKCGS+  +H+IF+E+    +D + W+ LI+GYG HG+GE A+
Sbjct: 516 SGFISKIAVITGLIDMYSKCGSLDYAHKIFDEIPNKEKDIIVWSVLIAGYGMHGHGETAV 575

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479
            LF +M  SG++P+ IT  ++L AC+H GLV +  TLF  +++    +    HY C VDL
Sbjct: 576 LLFNQMVHSGMQPNEITFTSVLHACSHRGLVDDGLTLFKYMIENYPSSPLPNHYTCVVDL 635

Query: 480 LGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANY 539
           LG++G++++A  ++ +MP + +  I  +L+ AC IH  +E+ E+ A +L E EPE+  NY
Sbjct: 636 LGRAGRLDEAYDLIKSMPFQQNHSIWGALLGACLIHQNVELGEVAAERLFELEPESTGNY 695

Query: 540 TLLSMVCSESGNWLGAEE 557
            LL+ + +  G W  AE 
Sbjct: 696 ILLANIYAAVGRWKDAEN 713



 Score =  211 bits (537), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 139/473 (29%), Positives = 237/473 (50%), Gaps = 8/473 (1%)

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE-LLAGIISLCS 140
           A +LFD++       WN+II  +   GF+  +L +F  M   G     +     +I  CS
Sbjct: 136 ARKLFDDLSDPSLFLWNAIIKMYVDKGFHFDALRVFDSMICSGKCWPDKYTFPLVIKACS 195

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
            +  L +G  IH   +V G F  ++FV  +LL +Y  C    +A +VF  M+ R+ VSW 
Sbjct: 196 VMSMLNVGVLIHGRALVSG-FSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWN 254

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
            MISG   +   +  + +F +M    V+P   T+   L +C  L++L  G  +H      
Sbjct: 255 TMISGWFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCGHLKELELGIKVHKLVQKN 314

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
                  +  AL+ MY  C   +  A ++F  TK KDV+ W+S+I GY  +G+   A+ L
Sbjct: 315 HLQEKIEVRNALVDMYSRCG-GMDEASLVFAETKEKDVITWTSMINGYIMNGNAKSALAL 373

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
              M+L+ + PN+VTL ++LS+C     L  G  +H ++M+  L+ DV +  AL++MY+K
Sbjct: 374 CPAMQLDGVVPNAVTLASLLSACASLCCLKQGKSLHAWVMRKKLDSDVLVVTALIDMYAK 433

Query: 381 CGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
           C +++ S Q+F + + +  V W  L+SG   +    EA+ LF  M    VE +  T  ++
Sbjct: 434 CNAVSYSFQVFAKTSMKRTVPWNALLSGLIHNELAREAVGLFKSMLIEEVEANHATFNSV 493

Query: 441 LSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKP 500
           + A      +K+   L + +++   I+  I      +D+  K G ++ A K+   +P K 
Sbjct: 494 IPAYAILADLKQVMNLHSYLVRSGFIS-KIAVITGLIDMYSKCGSLDYAHKIFDEIPNKE 552

Query: 501 STRIL-SSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLSMVCSESG 550
              I+ S L++   +HG  E A +L +Q++ +  +P N   +T +   CS  G
Sbjct: 553 KDIIVWSVLIAGYGMHGHGETAVLLFNQMVHSGMQP-NEITFTSVLHACSHRG 604


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 188/563 (33%), Positives = 313/563 (55%), Gaps = 5/563 (0%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           +E+  SG+  N   +  ++ ACA  Q     G ++H   LK G D D   +N+L+ MY+K
Sbjct: 172 KEMVRSGIMPNEFSISIILNACAGLQEGD-LGRKIHGLMLKMGLDLDQFSANALVDMYSK 230

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
             + E A  +F ++ + D +SWN+II     +     +L +  EM   G       L+  
Sbjct: 231 AGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSA 290

Query: 136 ISLCSQIGELELGRQIHA-LVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           +  C+ +G  ELGRQ+H+ L+ +D   +L  F +  L+D+YSKC     A R ++ M  +
Sbjct: 291 LKACAAMGFKELGRQLHSSLIKMDAHSDL--FAAVGLVDMYSKCEMMDDARRAYDSMPKK 348

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
           + ++W A+ISG     ++   + LF  M  E +   + TL+ VL + A L+ ++  K IH
Sbjct: 349 DIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIH 408

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
             +   G   D ++  +L+  Y +C      ++I  ERT  +D+V ++S+I  YSQ GD 
Sbjct: 409 TISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERT-WEDLVAYTSMITAYSQYGDG 467

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
            EA+KL+ +M+   I+P+     ++L++C   S    G  +H + +K G   D+   N+L
Sbjct: 468 EEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSL 527

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           +NMY+KCGSI  + + F+E+  R  VSW+ +I GY  HG+G+EAL+LF +M   GV P+ 
Sbjct: 528 VNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNH 587

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS 494
           IT++++L ACNHAGLV E +  F  +     I    EHYAC +DLLG+SGK+ +A ++V+
Sbjct: 588 ITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAVELVN 647

Query: 495 TMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLG 554
           ++P +    +  +L+ A RIH  +E+ +  A  L + EPE +  + LL+ + + +G W  
Sbjct: 648 SIPFEADGFVWGALLGAARIHKNIELGQKAAKMLFDLEPEKSGTHVLLANIYASAGMWEN 707

Query: 555 AEEVWRVMRAKGLSKSYGFSRIE 577
             +V + M+   + K  G S IE
Sbjct: 708 VAKVRKFMKDSKVKKEPGMSWIE 730



 Score =  259 bits (662), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 164/549 (29%), Positives = 296/549 (53%), Gaps = 13/549 (2%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V   F E+ L ++  E+   G+  N    PSV+KAC+  +   + G ++H  A+ +G ++
Sbjct: 58  VQNGFVEEALLVF-NEMCLLGVKCNEFTFPSVLKACSMKRD-LNMGRKVHGMAVVTGFES 115

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D  ++N+L+ MYAK    + + +LF  +  R+ +SWN++ +C+ Q+     ++ +F+EM 
Sbjct: 116 DGFVANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMV 175

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
             G +     ++ I++ C+ + E +LGR+IH L++  G  +L  F + AL+D+YSK    
Sbjct: 176 RSGIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMG-LDLDQFSANALVDMYSKAGEI 234

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             A+ VF+ +   + VSW A+I+GC+     D  + L   M+  G +P   TL+  L AC
Sbjct: 235 EGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKAC 294

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A +     G+ +H          D   +  L+ MY +C E +  AR  ++    KD++ W
Sbjct: 295 AAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKC-EMMDDARRAYDSMPKKDIIAW 353

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           +++I GYSQ GD  +A+ LFS+M  E I+ N  TL  +L S      +     +H   +K
Sbjct: 354 NALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIK 413

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
           +G+  D  + N+L++ Y KC  I  + +IF E    D V++T++I+ Y  +G GEEAL+L
Sbjct: 414 SGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKL 473

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYA--CYVDL 479
           +L+MQ++ ++PD     ++L+AC +    ++ + L  + +   K     + +A    V++
Sbjct: 474 YLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAI---KFGFMCDIFASNSLVNM 530

Query: 480 LGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLI-EAEPENAAN 538
             K G IEDA +  S +P +      S+++     HG  + A  L +Q++ +  P N  +
Sbjct: 531 YAKCGSIEDADRAFSEIPNRGIVS-WSAMIGGYAQHGHGKEALRLFNQMLRDGVPPN--H 587

Query: 539 YTLLSMVCS 547
            TL+S++C+
Sbjct: 588 ITLVSVLCA 596



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 147/508 (28%), Positives = 239/508 (47%), Gaps = 55/508 (10%)

Query: 48  LQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQN 107
           ++LH   +K G   DP + N L+++Y+K  +   A +L DE    D +SW+S+++ + QN
Sbjct: 1   MELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQN 60

Query: 108 GFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFV 167
           GF   +L +F EM L G          ++  CS   +L +GR++H + +V G FE   FV
Sbjct: 61  GFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTG-FESDGFV 119

Query: 168 STALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV 227
           +  L+ +Y+KC     + R+F  +V RN VSW A+ S  + S+     + LF+ M R G+
Sbjct: 120 ANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGI 179

Query: 228 KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPAR 287
            P   +++I+L ACA L++   G+ IHG     G D D   + AL+ MY +  E +  A 
Sbjct: 180 MPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGE-IEGAV 238

Query: 288 IIFERTKVKDVVIWSSIIRG--YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
            +F+     DVV W++II G       DL  A+ L   M+     PN  TL + L +C  
Sbjct: 239 AVFQDIAHPDVVSWNAIIAGCVLHDCNDL--ALMLLDEMKGSGTRPNMFTLSSALKACAA 296

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
             F   G  +H  ++K   + D+     L++MYSKC  +  + + ++ M  +D ++W  L
Sbjct: 297 MGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNAL 356

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA---------------------- 443
           ISGY   G   +A+ LF +M    ++ +  T+  +L +                      
Sbjct: 357 ISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGI 416

Query: 444 ----------------CNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487
                           CNH   + EA  +F     E  +A     Y   +    + G  E
Sbjct: 417 YSDFYVINSLLDTYGKCNH---IDEASKIFEERTWEDLVA-----YTSMITAYSQYGDGE 468

Query: 488 DACKVVSTM---PMKPSTRILSSLVSAC 512
           +A K+   M    +KP   I SSL++AC
Sbjct: 469 EALKLYLQMQDADIKPDPFICSSLLNAC 496



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 148/279 (53%), Gaps = 9/279 (3%)

Query: 253 IHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSG 312
           +H +    GF  D  L   L+ +Y +C    +  +++ E +++ DVV WSS++ GY Q+G
Sbjct: 3   LHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSEL-DVVSWSSLLSGYVQNG 61

Query: 313 DLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN 372
            + EA+ +F+ M L  ++ N  T  ++L +C+ +  L+ G  VH   +  G   D  + N
Sbjct: 62  FVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVAN 121

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
            L+ MY+KCG +  S ++F  +  R+ VSW  L S Y       EA+ LF EM  SG+ P
Sbjct: 122 TLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMP 181

Query: 433 DAITVLAILSACNHAGLVK-EAETLFNNVMKEKKIALAIEHYA--CYVDLLGKSGKIEDA 489
           +  ++  IL+AC  AGL + +     + +M   K+ L ++ ++    VD+  K+G+IE A
Sbjct: 182 NEFSISIILNAC--AGLQEGDLGRKIHGLM--LKMGLDLDQFSANALVDMYSKAGEIEGA 237

Query: 490 CKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
             V   +   P     +++++ C +H   ++A ML  ++
Sbjct: 238 VAVFQDIA-HPDVVSWNAIIAGCVLHDCNDLALMLLDEM 275


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 185/573 (32%), Positives = 305/573 (53%), Gaps = 54/573 (9%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYA--KFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           Q H   +++G  +DP  ++ L ++ A   F+  E A ++FDE+P  ++ +WN++I  +  
Sbjct: 49  QTHAHMIRTGMFSDPYSASKLFAIAALSSFASLEYARKVFDEIPQPNSFTWNTLIRAYAS 108

Query: 107 NGFYVRSLEMFREM-----------YLCGFVLKAELLAGIISLCSQIGELELGRQIHALV 155
               V S+  F +M           Y   F++KA          +++  L LG+ +H + 
Sbjct: 109 GPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKA---------AAEVSSLSLGQSLHGMA 159

Query: 156 IVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTG 215
           I   +    VFV+ +L+  Y  C     A +VF  +  ++ VSW +MI+G +   + D  
Sbjct: 160 I-KSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKA 218

Query: 216 IDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHM 275
           ++LF+ M+ E VK + VT+  VL ACA++RDL  G+ +  Y      + +  L+ A++ M
Sbjct: 219 LELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDM 278

Query: 276 YCEC------------------------------TEALHPARIIFERTKVKDVVIWSSII 305
           Y +C                              +E    AR +      KD+V W+++I
Sbjct: 279 YTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALI 338

Query: 306 RGYSQSGDLSEAMKLFSRMRLER-IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
             Y Q+G  +EA+ +F  ++L++ I+ N +TL++ LS+C +   L  G  +H YI K G+
Sbjct: 339 SAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKKNGI 398

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
             +  + +AL++MYSKCG +  + ++FN +  RD   W+ +I G   HG G EA+ +F +
Sbjct: 399 KMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYK 458

Query: 425 MQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSG 484
           MQE+ V+P+ +T   +  AC+H GLV EAE+LF  +     I    +HYAC VD+LG+SG
Sbjct: 459 MQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPEDKHYACIVDVLGRSG 518

Query: 485 KIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSM 544
            +E A K +  MP+ PST +  +L+ AC+IH  L +AEM   +L+E EP N   + LLS 
Sbjct: 519 YLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLAEMACTRLLELEPRNDGAHVLLSN 578

Query: 545 VCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           + ++SG W    E+ + MR  GL K  G S IE
Sbjct: 579 IYAKSGKWDNVSELRKHMRVTGLKKEPGCSSIE 611



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 106/356 (29%), Positives = 185/356 (51%), Gaps = 35/356 (9%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           S  Y N    P +IKA A   +    G  LH  A+KS   +D  ++NSLI  Y      +
Sbjct: 127 SQCYPNKYTFPFLIKAAAEVSSLS-LGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLD 185

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
           SA ++F  +  +D +SWNS+IN F Q G   ++LE+F++M           + G++S C+
Sbjct: 186 SACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACA 245

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
           +I +LE GR++ +  I +    +++ ++ A+LD+Y+KC     A R+F+ M  ++ V+WT
Sbjct: 246 KIRDLEFGRRVCSY-IEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWT 304

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGV--------------KPT---------------- 230
            M+ G   S++Y+   ++  AM ++ +              KP                 
Sbjct: 305 TMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIK 364

Query: 231 --RVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
             ++TL   L ACA++  L  G+ IH Y    G   + ++++AL+HMY +C + L  AR 
Sbjct: 365 LNQITLVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGD-LEKARE 423

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
           +F   + +DV +WS++I G +  G  SEA+ +F +M+   ++PN VT   +  +C+
Sbjct: 424 VFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACS 479



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 126/485 (25%), Positives = 228/485 (47%), Gaps = 53/485 (10%)

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFE----LSVFVSTALLDLYSKCHHWLIALRVFEQ 190
           +I  CS + +L   +Q HA +I  G F      S   + A L  ++   +   A +VF++
Sbjct: 37  LIDRCSSLRQL---KQTHAHMIRTGMFSDPYSASKLFAIAALSSFASLEY---ARKVFDE 90

Query: 191 MVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM--QREGVKPTRVTLTIVLLACAELRDLR 248
           +   N  +W  +I       +    I  F  M        P + T   ++ A AE+  L 
Sbjct: 91  IPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLS 150

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
            G+++HG A       D  ++ +L+H Y  C + L  A  +F   K KDVV W+S+I G+
Sbjct: 151 LGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGD-LDSACKVFTTIKEKDVVSWNSMINGF 209

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
            Q G   +A++LF +M  E ++ + VT++ +LS+C +   L  G  V  YI +  +N ++
Sbjct: 210 VQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNL 269

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGF----------------- 411
           ++ NA+++MY+KCGSI  + ++F+ M  +D V+WTT++ GY                   
Sbjct: 270 TLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKK 329

Query: 412 --------------HGYGEEALQLFLEMQ-ESGVEPDAITVLAILSACNHAGLVKEAETL 456
                         +G   EAL +F E+Q +  ++ + IT+++ LSAC   G + E    
Sbjct: 330 DIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGAL-ELGRW 388

Query: 457 FNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG 516
            ++ +K+  I +     +  + +  K G +E A +V +++  K    + S+++    +HG
Sbjct: 389 IHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVE-KRDVFVWSAMIGGLAMHG 447

Query: 517 RLEVAEMLAHQLIEAE-PENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSR 575
               A  + +++ EA    N   +T +   CS +G    AE ++  M +     SYG   
Sbjct: 448 CGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMES-----SYGIVP 502

Query: 576 IENEY 580
            +  Y
Sbjct: 503 EDKHY 507



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 78/189 (41%), Gaps = 16/189 (8%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           N   L S + ACA     +  G  +H    K+G   +  ++++LI MY+K    E A ++
Sbjct: 366 NQITLVSTLSACAQVGALE-LGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREV 424

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL 145
           F+ +  RD   W+++I     +G    +++MF +M              +   CS  G +
Sbjct: 425 FNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLV 484

Query: 146 ELGRQI-------HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
           +    +       + +V  D  +         ++D+  +  +   A++  E M I    S
Sbjct: 485 DEAESLFYKMESSYGIVPEDKHY-------ACIVDVLGRSGYLEKAVKFIEAMPIPPSTS 537

Query: 199 -WTAMISGC 206
            W A++  C
Sbjct: 538 VWGALLGAC 546


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 178/551 (32%), Positives = 308/551 (55%), Gaps = 9/551 (1%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI-SNSLISMYAKFSKPESAYQLFDE 88
            PS+I+A     +      QLH  AL+ G     V  S SL+  Y +F +   AY++FDE
Sbjct: 73  FPSLIRAAPSNAS----AAQLHACALRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDE 128

Query: 89  MPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELG 148
           M  RD  +WN++++   +N     ++ +F  M   G       ++ ++ +C  +G+  L 
Sbjct: 129 MSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLA 188

Query: 149 RQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCID 208
             +H   +  G  +  +FV  AL+D+Y K      A  VF  M  R+ V+W ++ISGC  
Sbjct: 189 LVMHVYAVKHG-LDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQ 247

Query: 209 SQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHL 268
                  + +F+ M+  GV P  +TL  +  A A+  D R+ K++H Y    G+D D  +
Sbjct: 248 RGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDII 307

Query: 269 SA-ALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM-RL 326
           +  A++ MY + +  +  A+ +F+   V+D V W+++I GY Q+G  +EA++ +  M + 
Sbjct: 308 AGNAIVDMYAKLSN-IEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKH 366

Query: 327 ERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITS 386
           E ++    T +++L + +    L  G+ +H   +K GLN DV +G  L+++Y+KCG +  
Sbjct: 367 EGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAE 426

Query: 387 SHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH 446
           +  +F +M  R    W  +ISG G HG+G EAL LF  MQ+ G++PD +T +++L+AC+H
Sbjct: 427 AMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSH 486

Query: 447 AGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILS 506
           AGLV +  + F+ +     I    +HYAC  D+LG++G++++A   +  MP+KP + +  
Sbjct: 487 AGLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWG 546

Query: 507 SLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566
           +L+ ACRIHG +E+ ++ +  L E +PEN   Y L+S + ++ G W G +EV  ++R + 
Sbjct: 547 ALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQN 606

Query: 567 LSKSYGFSRIE 577
           L K+ G+S IE
Sbjct: 607 LQKTPGWSSIE 617


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 178/535 (33%), Positives = 298/535 (55%), Gaps = 9/535 (1%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           +H  A+K G + D  +S +L+++Y+K  +   A  LFD M  RD + WN ++  + Q G 
Sbjct: 205 VHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGL 264

Query: 110 YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIG--ELELGRQIHALVIVDGSFELSVFV 167
              + ++F E +  G       +  I++ C   G  +LELG+Q+H + +  G  +  V V
Sbjct: 265 EKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSG-LDSDVSV 323

Query: 168 STALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV 227
           + +L+++YSK      A  VF  M   + +SW +MIS C  S   +  ++LF  +  EG+
Sbjct: 324 ANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGL 383

Query: 228 KPTRVTLTIVLLA-----CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEA 282
           KP   TL  + LA     C  L  L  GK IH +A   GFD D H+++ ++ MY +C + 
Sbjct: 384 KPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDM 443

Query: 283 LHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSS 342
           ++ A I+F      D V W+S+I G   +G+  +A++++ RMR  R+ P+  T   ++ +
Sbjct: 444 VN-AGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKA 502

Query: 343 CTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSW 402
            +  + L  G  +H  ++K     D  +G +L++MY+KCG+I  ++++F +M  R+   W
Sbjct: 503 SSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALW 562

Query: 403 TTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462
             ++ G   HG  EEA+ LF  M+  G+EPD ++ + ILSAC+HAGL  EA    +++  
Sbjct: 563 NAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPN 622

Query: 463 EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAE 522
           +  I   IEHY+C VD LG++G +++A KV+ TMP K S  I  +L+ ACRI G +E  +
Sbjct: 623 DYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGK 682

Query: 523 MLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +A +L   EP ++A Y LLS + + +  W    +  ++M+ K + K  GFS I+
Sbjct: 683 RVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWID 737



 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 153/517 (29%), Positives = 262/517 (50%), Gaps = 25/517 (4%)

Query: 51  HCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCF-----T 105
           H   + SGS  D  +SN+L++MY+K     SA Q+FD  P RD ++WN+I+  +     +
Sbjct: 100 HARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDS 159

Query: 106 QNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSV 165
            +G     L +FR +           LA ++ LC   G L     +H   I  G  E  V
Sbjct: 160 NDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIG-LEWDV 218

Query: 166 FVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
           FVS AL+++YSKC     A  +F+ M  R+ V W  M+ G +          LF    R 
Sbjct: 219 FVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRS 278

Query: 226 GVKPTRVTLTIVLLAC--AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEAL 283
           G++P   ++ ++L  C  A   DL  GK +HG A   G D D  ++ +L++MY +   A 
Sbjct: 279 GLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCA- 337

Query: 284 HPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPN-----SVTLLA 338
           + AR +F   K  D++ W+S+I   +QS    E++ LF  +  E ++P+     S+TL  
Sbjct: 338 YFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLAT 397

Query: 339 ILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARD 398
              +C     L  G  +H + +KAG + D+ + + +++MY KCG + ++  +FN ++A D
Sbjct: 398 AAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPD 457

Query: 399 FVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFN 458
            V+WT++ISG   +G  ++AL+++  M++S V PD  T   ++ A +    +++   L  
Sbjct: 458 DVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHA 517

Query: 459 NVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRL 518
           NV+K   ++      +  VD+  K G IEDA ++   M ++ +  + ++++     HG  
Sbjct: 518 NVIKLDCVSDPFVGTS-LVDMYAKCGNIEDAYRLFKKMNVR-NIALWNAMLVGLAQHGNA 575

Query: 519 EVA-----EMLAHQLIEAEPENAANYTLLSMVCSESG 550
           E A      M +H +   EP+  +   +LS  CS +G
Sbjct: 576 EEAVNLFKSMKSHGI---EPDRVSFIGILS-ACSHAG 608



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/204 (36%), Positives = 105/204 (51%), Gaps = 6/204 (2%)

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY- 308
           GK  H      G   DH LS  L+ MY +C  +L  AR +F+ T  +D+V W++I+  Y 
Sbjct: 96  GKCTHARIVVSGSAGDHFLSNNLLTMYSKCG-SLSSARQVFDTTPERDLVTWNAILGAYA 154

Query: 309 ----SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
               S  G+  E + LF  +R        +TL  +L  C     L    GVH Y +K GL
Sbjct: 155 ASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGL 214

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
            +DV +  AL+N+YSKCG +  +  +F+ M  RD V W  ++ GY   G  +EA QLF E
Sbjct: 215 EWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSE 274

Query: 425 MQESGVEPDAITVLAILSACNHAG 448
              SG+ PD  +V  IL+ C  AG
Sbjct: 275 FHRSGLRPDEFSVQLILNGCLWAG 298


>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Vitis vinifera]
          Length = 629

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 184/538 (34%), Positives = 304/538 (56%), Gaps = 12/538 (2%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYR-DTISWNSIINCFT 105
           G ++H   L +G    P+   SLI+MY+K ++   A  +F +  +  +  ++N+II+ F 
Sbjct: 56  GKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFI 115

Query: 106 QNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSV 165
            NGF     E +++M   G +         I  C  + E+   ++IH L+   G  EL V
Sbjct: 116 TNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLEI---KKIHGLLFKFG-LELDV 171

Query: 166 FVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
           F+ +AL++ Y K      A   FE++ IR+ V W AM++G      ++  ++ FR M  E
Sbjct: 172 FIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDE 231

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
            V P+R T+T VL   A + DL NG+ IHG+A   G+D    +S +L+ MY +C + +  
Sbjct: 232 SVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKC-KCIED 290

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           A  IFE  + KD+  W+SI+  + Q GD    ++L  RM    I+P+ VT+  +L +C+ 
Sbjct: 291 ALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSH 350

Query: 346 QSFLSHGLGVHCYIMKAGLNFD------VSIGNALMNMYSKCGSITSSHQIFNEMAARDF 399
            + L HG  +H Y++ +GL  D      V + NA+++MY+KCGS+  +H +F  M+ +D 
Sbjct: 351 LAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDV 410

Query: 400 VSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNN 459
            SW  +I GYG HGYG EAL++F  M E  ++PD +T + +LSAC+HAG V +       
Sbjct: 411 ASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQ 470

Query: 460 VMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLE 519
           +  +  +A  IEHY C +D+LG++G++++A ++  TMP++ +  +  +L++ACR+H    
Sbjct: 471 MKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAV 530

Query: 520 VAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +AE+ A ++ E EPE+  +Y L+S V    G +    EV   MR + + K+ G S IE
Sbjct: 531 LAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIE 588



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 155/351 (44%), Gaps = 19/351 (5%)

Query: 228 KPTRVTLTIV-LLACAELRDLRNGKAIHGYAYCCGFDFDHHLS-AALMHMYCECTEALHP 285
           +P  +T  I  L A A  ++L  GK IH Y    GF  +  LS  +L++MY +C +    
Sbjct: 33  QPYNLTTCIASLQASAHHKNLSKGKEIHSYMLINGF-LNSPLSITSLINMYSKCNQMNFA 91

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
             I  + T   +V  +++II G+  +G   E  + + +MR E + P+  T    + +C  
Sbjct: 92  LSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLD 151

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
              +     +H  + K GL  DV IG+AL+N Y K G +  +   F E+  RD V W  +
Sbjct: 152 VLEIKK---IHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAM 208

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK--- 462
           ++GY   G  E  L+ F  M +  V P   TV  +LS     G +     +    MK   
Sbjct: 209 VNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGY 268

Query: 463 EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKP--STRILSSLVSACRIH-GRLE 519
           +  +A++       +D+ GK   IEDA ++   M  K   S   + S+   C  H G L 
Sbjct: 269 DSGVAVS----NSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLR 324

Query: 520 VAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKS 570
           + + +    I  +P+     T+L   CS     +   E+   M   GL K 
Sbjct: 325 LLDRMLGAGI--QPDLVTVTTVLP-ACSHLAALMHGREIHGYMIVSGLGKD 372


>gi|224141133|ref|XP_002323929.1| predicted protein [Populus trichocarpa]
 gi|222866931|gb|EEF04062.1| predicted protein [Populus trichocarpa]
          Length = 770

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 192/565 (33%), Positives = 315/565 (55%), Gaps = 12/565 (2%)

Query: 17  ELHPSGLYSNTAILPSVIKAC-AYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           +++ SG+  +     +V+  C  + + +   GLQLH   +K G D +  + N+LISMY++
Sbjct: 152 KMNSSGVVFDAVTYTTVLSFCWRHVEAYFLIGLQLHSCIVKFGFDCEVFVGNALISMYSR 211

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFY-VRSLEMFREMYLCGFVLKAELLAG 134
           +     A ++F+EM  RD +SWN++I+ ++Q G Y + ++ MF +M+  G  L       
Sbjct: 212 WGHLVEARRVFEEMKTRDLVSWNAMISGYSQEGIYGLEAISMFLQMFRGGMELDRISFTS 271

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
            +S C     LEL RQIH L I     E  V VS  L+  Y KC     A  VF+ M  R
Sbjct: 272 AVSACGYEKNLELARQIHGLSI-KTRHEKHVAVSNVLISTYFKCQVIEDARLVFQNMNER 330

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
           N VSWT MIS  ID       +  F  M+ +GV P  VT   ++ A      +  GK +H
Sbjct: 331 NVVSWTTMIS--IDEAE---AVSFFNEMRLDGVYPNDVTFVGLIHAITIGELVVQGKMVH 385

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
           G+    GF    ++  +++ MY +  +++  +  +F+  K +D++ W+++I G+  +G  
Sbjct: 386 GFCTKTGFSSKSNVCNSIITMYAK-FKSMQDSVKVFQELKYQDIIAWNALISGFVHNGLC 444

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSS--CTRQSFLSHGLGVHCYIMKAGLNFDVSIGN 372
            EA++ F    +E  +PN  +  +IL++        L +G   H  I+K GLN D  + +
Sbjct: 445 QEAIRAFFSGLIES-KPNQYSFGSILNAIGAAEDVSLKYGQRCHSQIIKLGLNTDPIVSS 503

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
           AL++MY+K GSI  S ++F E   +   +WTT+IS Y  HG  E  +  F EM+   V P
Sbjct: 504 ALLDMYAKRGSICESQKVFVETPQQSQFAWTTIISAYARHGDYESVMNWFEEMRRLEVRP 563

Query: 433 DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKV 492
           D+IT L+IL+AC   G+V     LF +++K+ +I  + EHY+C VD+LG++G++E+A ++
Sbjct: 564 DSITFLSILTACGRRGMVDMGCHLFGSMVKDYQIEPSAEHYSCLVDMLGRAGRLEEAERL 623

Query: 493 VSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNW 552
           +S +P  P   +L SL+ ACR+HG +++ E +A  L+E EP  + +Y L+S + +E G W
Sbjct: 624 MSHIPGGPGLSVLQSLLGACRVHGNVDMGERVADALMEMEPTESGSYVLMSNLYAEIGKW 683

Query: 553 LGAEEVWRVMRAKGLSKSYGFSRIE 577
               +V + MR KG+ K  GFS ++
Sbjct: 684 EMVAKVRKRMRVKGVKKEVGFSWVD 708



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 3/75 (4%)

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
           + N+LMNMY K G    +  IF  +   D VSW T++SG       E+A     +M  SG
Sbjct: 101 VSNSLMNMYCKSGQFCKALCIFENLTHPDIVSWNTVLSGC---QTSEDAFSFACKMNSSG 157

Query: 430 VEPDAITVLAILSAC 444
           V  DA+T   +LS C
Sbjct: 158 VVFDAVTYTTVLSFC 172


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 190/548 (34%), Positives = 295/548 (53%), Gaps = 38/548 (6%)

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           NS+IS   ++   + +  LF  MP +D  SWNS+I  F Q+  +  +L+ F  M+   FV
Sbjct: 94  NSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFV 153

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
           L        +S CS++ +L+LG QIH L I    + L VF+ + L+D YSKC     A R
Sbjct: 154 LNDYSFGSGLSACSRLKDLKLGAQIHGL-ISKSKYSLDVFMGSGLIDFYSKCGLVGCARR 212

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VF+ M  +N VSW  +I+    +      ++ F  M   G KP  VTL  V+ ACA L  
Sbjct: 213 VFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAA 272

Query: 247 LRNGKAIHGYAYCCG-FDFDHHLSAALMHMYCEC-------------------------- 279
            + G  IH        F  D  L  AL+ MY +C                          
Sbjct: 273 FKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVS 332

Query: 280 ----TEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVT 335
               + ++  AR +F   K KD+V W+++I GY+Q+G+  EA+ LF  ++ E + P   T
Sbjct: 333 GYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYT 392

Query: 336 LLAILSSCTRQSFLSHGLGVHCYIMKAGLNF------DVSIGNALMNMYSKCGSITSSHQ 389
              +L++    + L  G   H +++K G  F      D+ +GN+L++MY KCGS+    +
Sbjct: 393 FGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLR 452

Query: 390 IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL 449
           +F  M  +D VSW T+I GY  +GYG EAL+LF +M ESG +PD +T++  L AC+HAGL
Sbjct: 453 VFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCACSHAGL 512

Query: 450 VKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLV 509
           V+E    F ++ KE  +    +HY C VDLLG++G +E+A  ++ +MP +P   + SSL+
Sbjct: 513 VEEGRRYFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLL 572

Query: 510 SACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSK 569
           SAC++H  + + + +A ++ E +P ++  Y LL+ + SE G W  A  V ++MR +G+ K
Sbjct: 573 SACKVHRNITLGKYVAEKIFEIDPTSSGPYVLLANMYSELGRWGDAVSVRKLMRRRGVVK 632

Query: 570 SYGFSRIE 577
             G S I+
Sbjct: 633 QPGCSWID 640



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 123/445 (27%), Positives = 202/445 (45%), Gaps = 42/445 (9%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           +E+ L  + + +H      N     S + AC+  +  +  G Q+H    KS    D  + 
Sbjct: 137 FEEALDWFVR-MHRDDFVLNDYSFGSGLSACSRLKDLK-LGAQIHGLISKSKYSLDVFMG 194

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           + LI  Y+K      A ++FD M  ++ +SWN +I C+ QNG  + +LE F  M   GF 
Sbjct: 195 SGLIDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFK 254

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
                LA ++S C+ +   + G QIHA V+    F   + +  AL+D+Y+KC     A  
Sbjct: 255 PDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARC 314

Query: 187 VFEQMVIRNE-------------------------------VSWTAMISGCIDSQNYDTG 215
           VF++M +RN                                VSW A+I+G   +   +  
Sbjct: 315 VFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEA 374

Query: 216 IDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDF------DHHLS 269
           + LFR ++RE V PT  T   +L A A L DL  G+  H +    GF F      D  + 
Sbjct: 375 LGLFRMLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVG 434

Query: 270 AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
            +L+ MY +C       R +FE    KD V W+++I GY+Q+G   EA++LF +M     
Sbjct: 435 NSLIDMYMKCGSVEEGLR-VFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGE 493

Query: 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA-GLNFDVSIGNALMNMYSKCGSITSSH 388
           +P+ VT++  L +C+    +  G      + K  GL         ++++  + G +  + 
Sbjct: 494 KPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEEAK 553

Query: 389 QIFNEMAAR-DFVSWTTLISGYGFH 412
            +   M  + D V W++L+S    H
Sbjct: 554 DLIESMPKQPDAVVWSSLLSACKVH 578



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 17/183 (9%)

Query: 41  QTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSI 100
           Q H H  +  H    +SG + D  + NSLI MY K    E   ++F+ M  +D +SWN++
Sbjct: 411 QAHSH--VVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKDHVSWNTM 468

Query: 101 INCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQI-------HA 153
           I  + QNG+ + +LE+F++M   G       + G +  CS  G +E GR+        H 
Sbjct: 469 IIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKEHG 528

Query: 154 LVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR-NEVSWTAMISGCIDSQNY 212
           L+ V   +       T ++DL  +      A  + E M  + + V W++++S C   +N 
Sbjct: 529 LLPVKDHY-------TCMVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLLSACKVHRNI 581

Query: 213 DTG 215
             G
Sbjct: 582 TLG 584



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 57/277 (20%), Positives = 99/277 (35%), Gaps = 84/277 (30%)

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIF 391
           +S     +L  C +         VH  +++     +V I N L+++Y KCG +  + ++F
Sbjct: 23  DSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVF 82

Query: 392 NEMAAR-------------------------------DFVSWTTLISGYGFHGYGEEALQ 420
           + M+ R                               D  SW ++I+G+  H   EEAL 
Sbjct: 83  DRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALD 142

Query: 421 LFLEMQESGVEPDAITVLAILSACNH---------------------------------- 446
            F+ M       +  +  + LSAC+                                   
Sbjct: 143 WFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYS 202

Query: 447 -AGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP---MKPST 502
             GLV  A  +F+  M+EK +      + C +    ++G   +A +    M     KP  
Sbjct: 203 KCGLVGCARRVFDG-MEEKNVV----SWNCLITCYEQNGPAIEALEAFGRMTELGFKPDE 257

Query: 503 RILSSLVSAC----------RIHGRLEVAEMLAHQLI 529
             L+S+VSAC          +IH R+  ++   + LI
Sbjct: 258 VTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLI 294


>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 182/563 (32%), Positives = 308/563 (54%), Gaps = 6/563 (1%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           E+   G++ +      +++ C    + +  G  +H   +  G  +   +S +L++MYAK 
Sbjct: 161 EMQSQGIFPDQFAYSGILQICIGLDSIE-LGNMVHAQIVIRGFTSHTFVSTALLNMYAKL 219

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
            + E +Y++F+ M   + +SWN++I  FT N  Y+ + ++F  M   G    A+   G+ 
Sbjct: 220 QEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVA 279

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI--R 194
                + ++   +++    +  G  + +  V TAL+D+ SKC     A  +F    I  R
Sbjct: 280 KAIGMLRDVNKAKEVSGYALELG-VDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCR 338

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
               W AMISG + S   +  ++LF  M +  +     T   V  A A L+ L  GK +H
Sbjct: 339 FNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVH 398

Query: 255 GYAYCCGFDFDH-HLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGD 313
             A   G + ++  +S A+ + Y +C  +L   R +F R + +D++ W+S++  YSQ  +
Sbjct: 399 ARAIKSGLEVNYVSISNAVANAYAKCG-SLEDVRKVFNRMEDRDLISWTSLVTAYSQCSE 457

Query: 314 LSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNA 373
             +A+++FS MR E I PN  T  ++L SC     L +G  VH  I K GL+ D  I +A
Sbjct: 458 WDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESA 517

Query: 374 LMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPD 433
           L++MY+KCG +  + ++FN ++  D VSWT +I+G+  HG  ++ALQLF  M + GVEP+
Sbjct: 518 LVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPN 577

Query: 434 AITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVV 493
           A+T L +L AC+H GLV+E    F  + K   +   +EHYAC VDLL + G + DA + +
Sbjct: 578 AVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFI 637

Query: 494 STMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWL 553
           S MP++P+  +  +L+ ACR+HG +E+ E+ A +++  + EN+A Y LLS    ESG++ 
Sbjct: 638 SRMPVEPNEMVWQTLLGACRVHGNVELGELAAQKILSFKAENSATYVLLSNTYIESGSYK 697

Query: 554 GAEEVWRVMRAKGLSKSYGFSRI 576
               +  +M+ +G+ K  G S I
Sbjct: 698 DGLSLRHLMKEQGVKKEPGCSWI 720



 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 158/517 (30%), Positives = 265/517 (51%), Gaps = 19/517 (3%)

Query: 64  VISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC 123
           V+ N +   Y+K S  ++A +LFD+M  R+T SW  +I    +NG ++   E F EM   
Sbjct: 106 VLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQ 165

Query: 124 GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
           G        +GI+ +C  +  +ELG  +HA +++ G F    FVSTALL++Y+K      
Sbjct: 166 GIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRG-FTSHTFVSTALLNMYAKLQEIED 224

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
           + +VF  M   N VSW AMI+G   +  Y    DLF  M  EGV P   T   V  A   
Sbjct: 225 SYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGM 284

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV--KDVVIW 301
           LRD+   K + GYA   G D +  +  AL+ M  +C  +L  AR IF    +  +    W
Sbjct: 285 LRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCG-SLQEARSIFNSHFITCRFNAPW 343

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           +++I GY +SG   +A++LF++M    I  +  T  ++ ++      LS G  VH   +K
Sbjct: 344 NAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIK 403

Query: 362 AGLNFD-VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
           +GL  + VSI NA+ N Y+KCGS+    ++FN M  RD +SWT+L++ Y      ++A++
Sbjct: 404 SGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIE 463

Query: 421 LFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEH--YACYVD 478
           +F  M+  G+ P+  T  ++L +C +  L++  + +   +    K+ L ++    +  VD
Sbjct: 464 IFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIIC---KVGLDMDKCIESALVD 520

Query: 479 LLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE--AEPENA 536
           +  K G + DA KV + +     T   +++++    HG ++ A  L  ++++   EP NA
Sbjct: 521 MYAKCGCLGDAKKVFNRIS-NADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEP-NA 578

Query: 537 ANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGF 573
             +  +   CS  G      + +++M+     K+YG 
Sbjct: 579 VTFLCVLFACSHGGLVEEGLQYFKLMK-----KTYGL 610



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/405 (25%), Positives = 182/405 (44%), Gaps = 39/405 (9%)

Query: 175 YSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTL 234
           YSKC     A R+F+QM  RN  SWT +I+G  ++  +  G + F  MQ +G+ P +   
Sbjct: 115 YSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAY 174

Query: 235 TIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTK 294
           + +L  C  L  +  G  +H      GF     +S AL++MY +  E     ++    T+
Sbjct: 175 SGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTE 234

Query: 295 VKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG 354
           V +VV W+++I G++ +    +A  LF RM  E + P++ T + +  +      ++    
Sbjct: 235 V-NVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKE 293

Query: 355 VHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNE--MAARDFVSWTTLISGYGFH 412
           V  Y ++ G++ +  +G AL++M SKCGS+  +  IFN   +  R    W  +ISGY   
Sbjct: 294 VSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRS 353

Query: 413 GYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEH 472
           G+ E+AL+LF +M ++ +  D  T  ++ +A      +   + +    +K       +  
Sbjct: 354 GFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSI 413

Query: 473 YACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE 532
                +   K G +ED  KV + M                                   E
Sbjct: 414 SNAVANAYAKCGSLEDVRKVFNRM-----------------------------------E 438

Query: 533 PENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKS-YGFSRI 576
             +  ++T L    S+   W  A E++  MRA+G++ + + FS +
Sbjct: 439 DRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSV 483



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 102/213 (47%), Gaps = 5/213 (2%)

Query: 234 LTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH---LSAALMHMYCECTEALHPARIIF 290
           L  +L  C + R L+  K +HG+     F  +HH   L   + H Y +C++     R+ F
Sbjct: 71  LVDLLRDCVDARFLKQAKTVHGFLLKSKFS-NHHSLVLLNHVAHAYSKCSDIDAACRL-F 128

Query: 291 ERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLS 350
           ++   ++   W+ +I G +++G   +  + F  M+ + I P+      IL  C     + 
Sbjct: 129 DQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIE 188

Query: 351 HGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYG 410
            G  VH  I+  G      +  AL+NMY+K   I  S+++FN M   + VSW  +I+G+ 
Sbjct: 189 LGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFT 248

Query: 411 FHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
            +    +A  LFL M   GV PDA T + +  A
Sbjct: 249 SNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKA 281


>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
          Length = 709

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 184/538 (34%), Positives = 304/538 (56%), Gaps = 12/538 (2%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYR-DTISWNSIINCFT 105
           G ++H   L +G    P+   SLI+MY+K ++   A  +F +  +  +  ++N+II+ F 
Sbjct: 56  GKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFI 115

Query: 106 QNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSV 165
            NGF     E +++M   G +         I  C  + E+   ++IH L+   G  EL V
Sbjct: 116 TNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLEI---KKIHGLLFKFG-LELDV 171

Query: 166 FVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
           F+ +AL++ Y K      A   FE++ IR+ V W AM++G      ++  ++ FR M  E
Sbjct: 172 FIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDE 231

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
            V P+R T+T VL   A + DL NG+ IHG+A   G+D    +S +L+ MY +C + +  
Sbjct: 232 SVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKC-KCIED 290

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           A  IFE  + KD+  W+SI+  + Q GD    ++L  RM    I+P+ VT+  +L +C+ 
Sbjct: 291 ALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSH 350

Query: 346 QSFLSHGLGVHCYIMKAGLNFD------VSIGNALMNMYSKCGSITSSHQIFNEMAARDF 399
            + L HG  +H Y++ +GL  D      V + NA+++MY+KCGS+  +H +F  M+ +D 
Sbjct: 351 LAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDV 410

Query: 400 VSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNN 459
            SW  +I GYG HGYG EAL++F  M E  ++PD +T + +LSAC+HAG V +       
Sbjct: 411 ASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQ 470

Query: 460 VMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLE 519
           +  +  +A  IEHY C +D+LG++G++++A ++  TMP++ +  +  +L++ACR+H    
Sbjct: 471 MKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAV 530

Query: 520 VAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +AE+ A ++ E EPE+  +Y L+S V    G +    EV   MR + + K+ G S IE
Sbjct: 531 LAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIE 588



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 155/351 (44%), Gaps = 19/351 (5%)

Query: 228 KPTRVTLTIV-LLACAELRDLRNGKAIHGYAYCCGFDFDHHLS-AALMHMYCECTEALHP 285
           +P  +T  I  L A A  ++L  GK IH Y    GF  +  LS  +L++MY +C +    
Sbjct: 33  QPYNLTTCIASLQASAHHKNLSKGKEIHSYMLINGF-LNSPLSITSLINMYSKCNQMNFA 91

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
             I  + T   +V  +++II G+  +G   E  + + +MR E + P+  T    + +C  
Sbjct: 92  LSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLD 151

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
              +     +H  + K GL  DV IG+AL+N Y K G +  +   F E+  RD V W  +
Sbjct: 152 VLEIKK---IHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAM 208

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK--- 462
           ++GY   G  E  L+ F  M +  V P   TV  +LS     G +     +    MK   
Sbjct: 209 VNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGY 268

Query: 463 EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKP--STRILSSLVSACRIH-GRLE 519
           +  +A++       +D+ GK   IEDA ++   M  K   S   + S+   C  H G L 
Sbjct: 269 DSGVAVS----NSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLR 324

Query: 520 VAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKS 570
           + + +    I  +P+     T+L   CS     +   E+   M   GL K 
Sbjct: 325 LLDRMLGAGI--QPDLVTVTTVLP-ACSHLAALMHGREIHGYMIVSGLGKD 372


>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
          Length = 846

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 187/560 (33%), Positives = 309/560 (55%), Gaps = 12/560 (2%)

Query: 26  NTAILP------SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKP 79
           N+ ILP      ++I++C    + +  G  +H   +  G      +S SL++MYAK    
Sbjct: 160 NSGILPDKFAYSAIIQSCIGLDSLE-LGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSI 218

Query: 80  ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLC 139
           E +Y +F+ M   + +SWN++I+  T NG ++ + ++F  M           L  +    
Sbjct: 219 EDSYWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAV 278

Query: 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS- 198
            ++ ++ +G+++       G  E +V V TAL+D+YSKC     A  VF+   I   V+ 
Sbjct: 279 GKLVDVNMGKEVQNCASELG-IEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNT 337

Query: 199 -WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
            W AMISG   S      ++L+  M + G+     T   V  A A  + L+ G+ +HG  
Sbjct: 338 PWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMV 397

Query: 258 YCCGFDF-DHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
             CG D     ++ A+   Y +C   L   R +F+R + +D+V W++++  YSQS    E
Sbjct: 398 LKCGLDLMVVSVNNAIADAYSKCG-FLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEE 456

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
           A+  F  MR E   PN  T  ++L SC    FL +G  VH  + KAGL+ +  I +AL++
Sbjct: 457 ALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALID 516

Query: 377 MYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAIT 436
           MY+KCGSIT + ++F++++  D VSWT +ISGY  HG  E+ALQLF  M+ SG++ +A+T
Sbjct: 517 MYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVT 576

Query: 437 VLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
           +L +L AC+H G+V+E    F  +     +   +EHYAC +DLLG+ G+++DA + +  M
Sbjct: 577 LLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKM 636

Query: 497 PMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAE 556
           PM+P+  +  +L+  CR+HG +E+ E+ A +++   PE +A Y LLS    E+G++    
Sbjct: 637 PMEPNEMVWQTLLGGCRVHGNVELGEIAARKILSIRPEYSATYVLLSNTYIETGSYEDGL 696

Query: 557 EVWRVMRAKGLSKSYGFSRI 576
            +  VM+ +G+ K  G+S I
Sbjct: 697 SLRNVMKDQGVKKEPGYSWI 716



 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 169/540 (31%), Positives = 264/540 (48%), Gaps = 23/540 (4%)

Query: 24  YSNTAI--LPSVIKACAYAQTHQHFGLQLHCTALKSG-SDAD-PVISNSLISMYAKFSKP 79
           Y  T +  L  V++ CA   + +     +H   LKS   D D  V+ N    +Y+K S+ 
Sbjct: 59  YQQTQVQDLIDVLRDCAEKGSIRE-AKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEF 117

Query: 80  ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLC 139
            +A  +FDEMP R+  SW  +I   T++G +    + F EM   G +      + II  C
Sbjct: 118 RAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSC 177

Query: 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSW 199
             +  LELG+ +HA +++ G F   +FVST+LL++Y+K      +  VF  M   N+VSW
Sbjct: 178 IGLDSLELGKMVHAQIVMRG-FATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSW 236

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
            AMISGC  +  +    DLF  M+     P   TL  V  A  +L D+  GK +   A  
Sbjct: 237 NAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASE 296

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVV--IWSSIIRGYSQSGDLSEA 317
            G + +  +  AL+ MY +C  +LH AR +F+   +   V   W+++I GYSQSG   EA
Sbjct: 297 LGIEGNVLVGTALIDMYSKCG-SLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEA 355

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF-DVSIGNALMN 376
           ++L+ +M    I  +  T  ++ ++      L  G  VH  ++K GL+   VS+ NA+ +
Sbjct: 356 LELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIAD 415

Query: 377 MYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAIT 436
            YSKCG +    ++F+ M  RD VSWTTL++ Y     GEEAL  F  M+E G  P+  T
Sbjct: 416 AYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFT 475

Query: 437 VLAILSACNHAGLVKEAETLFNNVMK-----EKKIALAIEHYACYVDLLGKSGKIEDACK 491
             ++L +C     ++    +   + K     EK I  A+      +D+  K G I +A K
Sbjct: 476 FSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESAL------IDMYAKCGSITEAGK 529

Query: 492 VVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL-IEAEPENAANYTLLSMVCSESG 550
           V   +   P     ++++S    HG +E A  L  ++ +     NA     +   CS  G
Sbjct: 530 VFDKIS-NPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGG 588



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 132/301 (43%), Gaps = 10/301 (3%)

Query: 198 SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
           S TA  S  +  +N    I +    Q+  V+     L  VL  CAE   +R  KA+HG  
Sbjct: 35  SQTAKKSKIVVGRNRPESIGISETYQQTQVQ----DLIDVLRDCAEKGSIREAKAVHGLV 90

Query: 258 YCCGFDFDHHLSAAL---MHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
               F+ D  L        H+Y +C+E    A  +F+    ++V  W+ +I G ++ G  
Sbjct: 91  LKSNFE-DKDLMVLFNHAAHVYSKCSE-FRAACGVFDEMPQRNVFSWTVMIVGSTEHGLF 148

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
            +  K F  M    I P+     AI+ SC     L  G  VH  I+  G    + +  +L
Sbjct: 149 FDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSL 208

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           +NMY+K GSI  S+ +FN M   + VSW  +ISG   +G   EA  LF+ M+     P+ 
Sbjct: 209 LNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNM 268

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS 494
            T++++  A      V   + +  N   E  I   +      +D+  K G + DA  V  
Sbjct: 269 YTLVSVSKAVGKLVDVNMGKEV-QNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFD 327

Query: 495 T 495
           T
Sbjct: 328 T 328


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 184/572 (32%), Positives = 306/572 (53%), Gaps = 53/572 (9%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYA--KFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           Q H   +++G+ +DP  ++ L +M A   F+  E A ++FDE+P  ++ +WN++I  +  
Sbjct: 48  QTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYAS 107

Query: 107 NGFYVRSLEMFREM----------YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVI 156
               V S+  F +M          Y   F++KA          +++  L LG+ +H +  
Sbjct: 108 GPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKA---------AAEVSSLSLGQSLHGMA- 157

Query: 157 VDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGI 216
           V  +    VFV+ +L+  Y  C     A +VF  +  ++ VSW +MI+G +   + D  +
Sbjct: 158 VKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKAL 217

Query: 217 DLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMY 276
           +LF+ M+ E VK + VT+  VL ACA++R+L  G+ +  Y      + +  L+ A++ MY
Sbjct: 218 ELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMY 277

Query: 277 CEC------------------------------TEALHPARIIFERTKVKDVVIWSSIIR 306
            +C                              +E    AR +      KD+V W+++I 
Sbjct: 278 TKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALIS 337

Query: 307 GYSQSGDLSEAMKLFSRMRLER-IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
            Y Q+G  +EA+ +F  ++L++ ++ N +TL++ LS+C +   L  G  +H YI K G+ 
Sbjct: 338 AYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIR 397

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            +  + +AL++MYSKCG +  S ++FN +  RD   W+ +I G   HG G EA+ +F +M
Sbjct: 398 MNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKM 457

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
           QE+ V+P+ +T   +  AC+H GLV EAE+LF+ +     I    +HYAC VD+LG+SG 
Sbjct: 458 QEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGY 517

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV 545
           +E A K +  MP+ PST +  +L+ AC+IH  L +AEM   +L+E EP N   + LLS +
Sbjct: 518 LEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNI 577

Query: 546 CSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            ++ G W    E+ + MR  GL K  G S IE
Sbjct: 578 YAKLGKWENVSELRKHMRVTGLKKEPGCSSIE 609



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 105/356 (29%), Positives = 184/356 (51%), Gaps = 35/356 (9%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           S  Y N    P +IKA A   +    G  LH  A+KS   +D  ++NSLI  Y      +
Sbjct: 125 SQCYPNKYTFPFLIKAAAEVSSLS-LGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLD 183

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
           SA ++F  +  +D +SWNS+IN F Q G   ++LE+F++M           + G++S C+
Sbjct: 184 SACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACA 243

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
           +I  LE GRQ+ +  I +    +++ ++ A+LD+Y+KC     A R+F+ M  ++ V+WT
Sbjct: 244 KIRNLEFGRQVCSY-IEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWT 302

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGV--------------KP----------------- 229
            M+ G   S++Y+   ++  +M ++ +              KP                 
Sbjct: 303 TMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMK 362

Query: 230 -TRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
             ++TL   L ACA++  L  G+ IH Y    G   + H+++AL+HMY +C + L  +R 
Sbjct: 363 LNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGD-LEKSRE 421

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
           +F   + +DV +WS++I G +  G  +EA+ +F +M+   ++PN VT   +  +C+
Sbjct: 422 VFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACS 477



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 125/483 (25%), Positives = 227/483 (46%), Gaps = 49/483 (10%)

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFE----LSVFVSTALLDLYSKCHHWLIALRVFEQM 191
           ISL  +   L   +Q H  +I  G+F      S   + A L  ++   +   A +VF+++
Sbjct: 34  ISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEY---ARKVFDEI 90

Query: 192 VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG-VKPTRVTLTIVLLACAELRDLRNG 250
              N  +W  +I       +    I  F  M  E    P + T   ++ A AE+  L  G
Sbjct: 91  PKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLG 150

Query: 251 KAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQ 310
           +++HG A       D  ++ +L+H Y  C + L  A  +F   K KDVV W+S+I G+ Q
Sbjct: 151 QSLHGMAVKSAVGSDVFVANSLIHCYFSCGD-LDSACKVFTTIKEKDVVSWNSMINGFVQ 209

Query: 311 SGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSI 370
            G   +A++LF +M  E ++ + VT++ +LS+C +   L  G  V  YI +  +N ++++
Sbjct: 210 KGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTL 269

Query: 371 GNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGF------------------- 411
            NA+++MY+KCGSI  + ++F+ M  +D V+WTT++ GY                     
Sbjct: 270 ANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDI 329

Query: 412 ------------HGYGEEALQLFLEMQ-ESGVEPDAITVLAILSACNHAGLVKEAETLFN 458
                       +G   EAL +F E+Q +  ++ + IT+++ LSAC   G + E     +
Sbjct: 330 VAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGAL-ELGRWIH 388

Query: 459 NVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRL 518
           + +K+  I +     +  + +  K G +E + +V +++  K    + S+++    +HG  
Sbjct: 389 SYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVE-KRDVFVWSAMIGGLAMHGCG 447

Query: 519 EVAEMLAHQLIEAE-PENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
             A  + +++ EA    N   +T +   CS +G    AE ++  M +     +YG    E
Sbjct: 448 NEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMES-----NYGIVPEE 502

Query: 578 NEY 580
             Y
Sbjct: 503 KHY 505



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 37/182 (20%), Positives = 74/182 (40%), Gaps = 2/182 (1%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           N   L S + ACA     +  G  +H    K G   +  ++++LI MY+K    E + ++
Sbjct: 364 NQITLVSTLSACAQVGALE-LGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREV 422

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL 145
           F+ +  RD   W+++I     +G    +++MF +M              +   CS  G +
Sbjct: 423 FNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLV 482

Query: 146 ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS-WTAMIS 204
           +    +   +  +            ++D+  +  +   A++  E M I    S W A++ 
Sbjct: 483 DEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLG 542

Query: 205 GC 206
            C
Sbjct: 543 AC 544


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 185/565 (32%), Positives = 319/565 (56%), Gaps = 9/565 (1%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGS-DADPVISNSLISMYAKFSKP 79
           +G Y N     +  +AC+ A+     G  +    +K+G   +D  +   LI M+ K    
Sbjct: 162 NGYYPNEYCFAAATRACSTAE-FVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGD 220

Query: 80  -ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISL 138
             SA+++F++MP R+ ++W  +I    Q G+   ++++F EM L G+      L+G+IS 
Sbjct: 221 LVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISA 280

Query: 139 CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH---HWLIALRVFEQMVIRN 195
           C+ +  L LG+Q+H+  I  G   L   V   L+++Y+KC        A ++F+Q++  N
Sbjct: 281 CANMELLLLGQQLHSQAIRHG-LTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHN 339

Query: 196 EVSWTAMISGCIDSQNYDT-GIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
             SWTAMI+G +    YD   +DLFR M    V P   T +  L ACA L  LR G+ + 
Sbjct: 340 VFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVF 399

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
            +A   GF   + ++ +L+ MY   +  +  AR  F+    K+++ ++++I  Y+++ + 
Sbjct: 400 THAVKLGFSSVNCVANSLISMYAR-SGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNS 458

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
            EA++LF+ +  + +  ++ T  ++LS       +  G  +H  ++K+GL  + S+ NAL
Sbjct: 459 EEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNAL 518

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           ++MYS+CG+I S+ Q+F +M  R+ +SWT++I+G+  HG+  +AL+LF +M E GV P+ 
Sbjct: 519 ISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNL 578

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS 494
           +T +A+LSAC+H GLV E    F ++  E  +   +EHYAC VD+LG+SG + +A + ++
Sbjct: 579 VTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFIN 638

Query: 495 TMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLG 554
           +MP K    +  + + ACR+HG LE+ +  A  +IE EP + A Y LLS + + +  W  
Sbjct: 639 SMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASTSKWDE 698

Query: 555 AEEVWRVMRAKGLSKSYGFSRIENE 579
              + + M+ K L K  G S +E E
Sbjct: 699 VSNIRKAMKEKNLIKEAGCSWVEVE 723



 Score =  215 bits (548), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 160/548 (29%), Positives = 261/548 (47%), Gaps = 20/548 (3%)

Query: 12  HLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLIS 71
           H+  Q  HP  L + +  L   I+  ++       G  +H    +S    D V  NSLIS
Sbjct: 56  HMVHQGSHPD-LQTYSLFLKKCIRTRSF-----DIGTLVHEKLTQSDLQLDSVTLNSLIS 109

Query: 72  MYAKFSKPESAYQLFDEM-PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE 130
           +Y+K  + E A  +F  M   RD ISW+++++CF  N    R+L  F +M   G+     
Sbjct: 110 LYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEY 169

Query: 131 LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI-ALRVFE 189
             A     CS    + +G  I   V+  G  +  V V   L+D++ K    L+ A +VFE
Sbjct: 170 CFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFE 229

Query: 190 QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
           +M  RN V+WT MI+  +        IDLF  M   G +P R TL+ V+ ACA +  L  
Sbjct: 230 KMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLL 289

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECT--EALHPARIIFERTKVKDVVIWSSIIRG 307
           G+ +H  A   G   D  +   L++MY +C+   ++  AR IF++    +V  W+++I G
Sbjct: 290 GQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITG 349

Query: 308 YSQSGDLS-EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           Y Q G    EA+ LF  M L  + PN  T  + L +C   + L  G  V  + +K G + 
Sbjct: 350 YVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSS 409

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
              + N+L++MY++ G I  + + F+ +  ++ +S+ T+I  Y  +   EEAL+LF E++
Sbjct: 410 VNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIE 469

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC--YVDLLGKSG 484
           + G+   A T  ++LS     G + + E +   V+K     L +    C   + +  + G
Sbjct: 470 DQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKS---GLKLNQSVCNALISMYSRCG 526

Query: 485 KIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE--AEPENAANYTLL 542
            IE A +V   M  +      +S+++    HG    A  L H+++E    P N   Y  +
Sbjct: 527 NIESAFQVFEDMEDRNVIS-WTSIITGFAKHGFATQALELFHKMLEEGVRP-NLVTYIAV 584

Query: 543 SMVCSESG 550
              CS  G
Sbjct: 585 LSACSHVG 592



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 89/192 (46%), Gaps = 2/192 (1%)

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
            +G L +A+     M  +   P+  T    L  C R      G  VH  + ++ L  D  
Sbjct: 43  NNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSV 102

Query: 370 IGNALMNMYSKCGSITSSHQIFNEM-AARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
             N+L+++YSKCG    +  IF  M ++RD +SW+ ++S +  +  G  AL  F++M E+
Sbjct: 103 TLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIEN 162

Query: 429 GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS-GKIE 487
           G  P+     A   AC+ A  V   +++F  V+K   +   +      +D+  K  G + 
Sbjct: 163 GYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLV 222

Query: 488 DACKVVSTMPMK 499
            A KV   MP +
Sbjct: 223 SAFKVFEKMPER 234


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 188/573 (32%), Positives = 325/573 (56%), Gaps = 5/573 (0%)

Query: 7   YEQTLHLYKQELH-PSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           +E++  L+K  L+   GL  + A + +VI  CA  Q     G+  H  ALK G   +  +
Sbjct: 278 FEESYGLFKGLLNGDEGLMPDVATMVTVIPLCA-RQGEVRLGMVFHGLALKLGLCGELKV 336

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
           ++SL+ MY+K      A  LFD    ++ ISWNS+I  ++++  +  + E+ R+M +   
Sbjct: 337 NSSLLDMYSKCGYLCEARVLFDTNE-KNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDK 395

Query: 126 VLKAEL-LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
           V   E+ L  ++ +C +  +    ++IH   +  G  +    V+ A +  Y+KC     A
Sbjct: 396 VKVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYA 455

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
             VF  M  +   SW A+I G + +      +DL+  M+  G++P   T+  +L ACA L
Sbjct: 456 EGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARL 515

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
           + L  GK IHG     GF+ D  +  +L+ +Y +C + L  A++ F+  + K++V W+++
Sbjct: 516 KSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKIL-LAKLFFDNMEEKNLVCWNTM 574

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
           I G+SQ+    +A+ +F +M   +I P+ ++++  L +C++ S L  G  +HC+ +K+ L
Sbjct: 575 INGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHL 634

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
                +  +L++MY+KCG +  S  IF+ +  +  V+W  LI+GYG HG+G +A++LF  
Sbjct: 635 TEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKS 694

Query: 425 MQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSG 484
           MQ +G  PD++T +A+L+ACNHAGLV E       +     I   +EHYAC VD+LG++G
Sbjct: 695 MQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAG 754

Query: 485 KIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSM 544
           ++ +A ++V+ +P KP +RI SSL+S+CR +  L++ E +A++L+E  P+ A NY L+S 
Sbjct: 755 RLNEALELVNELPDKPDSRIWSSLLSSCRNYRDLDIGEKVANKLLELGPDKAENYVLISN 814

Query: 545 VCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
             +  G W    ++ + M+  GL K  G S IE
Sbjct: 815 FYARLGKWDEVRKMRQRMKEIGLQKDAGCSWIE 847



 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 166/531 (31%), Positives = 270/531 (50%), Gaps = 21/531 (3%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEM 89
           LP VIKAC         G  +H  ALK+   +D  + N+LI+MY KF   ESA ++FD+M
Sbjct: 199 LPCVIKACV-GVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKM 257

Query: 90  PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC--GFVLKAELLAGIISLCSQIGELEL 147
           P R+ +SWNS++    +NG +  S  +F+ +     G +     +  +I LC++ GE+ L
Sbjct: 258 PQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRL 317

Query: 148 GRQIHALVIVDG-SFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGC 206
           G   H L +  G   EL   V+++LLD+YSKC  +L   RV      +N +SW +MI G 
Sbjct: 318 GMVFHGLALKLGLCGELK--VNSSLLDMYSKC-GYLCEARVLFDTNEKNVISWNSMIGGY 374

Query: 207 IDSQNYDTGIDLFRAMQREG-VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGF-DF 264
              +++    +L R MQ E  VK   VTL  VL  C E       K IHGYA   GF   
Sbjct: 375 SKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQS 434

Query: 265 DHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM 324
           D  ++ A +  Y +C  +LH A  +F   + K V  W+++I G+ Q+G   +A+ L+  M
Sbjct: 435 DELVANAFVAGYAKCG-SLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLM 493

Query: 325 RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSI 384
           R   +EP+  T+ ++LS+C R   LS G  +H  +++ G   D  I  +L+++Y +CG I
Sbjct: 494 RGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKI 553

Query: 385 TSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
             +   F+ M  ++ V W T+I+G+  + +  +AL +F +M  S + PD I+++  L AC
Sbjct: 554 LLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGAC 613

Query: 445 NHAGLVKEAETLFNNVMKEKKIALAIEH--YAC-YVDLLGKSGKIEDACKVVSTMPMKPS 501
           +    ++  + L    +K        EH    C  +D+  K G +E +  +   + +K  
Sbjct: 614 SQVSALRLGKELHCFAVKSH----LTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGE 669

Query: 502 TRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLSMVCSESG 550
               + L++   IHG    A  L   +  A   P++     LL+  C+ +G
Sbjct: 670 V-TWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLT-ACNHAG 718



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 117/388 (30%), Positives = 209/388 (53%), Gaps = 8/388 (2%)

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D V+   L++MY+    P  +  +F+    ++   WN++++ + +N  +  ++ +F EM 
Sbjct: 128 DVVLITRLVTMYSICDSPYDSCLVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMI 187

Query: 122 -LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
            L  FV     L  +I  C  + ++ LG  +H   +        VFV  AL+ +Y K   
Sbjct: 188 SLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLS-DVFVGNALIAMYGKFGF 246

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR--EGVKPTRVTLTIVL 238
              A++VF++M  RN VSW +++  C+++  ++    LF+ +    EG+ P   T+  V+
Sbjct: 247 VESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVI 306

Query: 239 LACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDV 298
             CA   ++R G   HG A   G   +  ++++L+ MY +C   L  AR++F+ T  K+V
Sbjct: 307 PLCARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCG-YLCEARVLFD-TNEKNV 364

Query: 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLE-RIEPNSVTLLAILSSCTRQSFLSHGLGVHC 357
           + W+S+I GYS+  D   A +L  +M++E +++ N VTLL +L  C  +        +H 
Sbjct: 365 ISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHG 424

Query: 358 YIMKAG-LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGE 416
           Y ++ G +  D  + NA +  Y+KCGS+  +  +F  M ++   SW  LI G+  +G+  
Sbjct: 425 YALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPR 484

Query: 417 EALQLFLEMQESGVEPDAITVLAILSAC 444
           +AL L+L M+ SG+EPD  T+ ++LSAC
Sbjct: 485 KALDLYLLMRGSGLEPDLFTIASLLSAC 512



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 162/319 (50%), Gaps = 6/319 (1%)

Query: 130 ELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
           +L+  ++ LC +   +E+GR+IH  +     F+  V + T L+ +YS C     +  VF 
Sbjct: 94  QLIGLLLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFN 153

Query: 190 QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM-QREGVKPTRVTLTIVLLACAELRDLR 248
               +N   W A++SG + +  +   + +F  M       P   TL  V+ AC  + D+R
Sbjct: 154 ASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVR 213

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
            G+A+HG+A       D  +  AL+ MY +    +  A  +F++   +++V W+S++   
Sbjct: 214 LGEAVHGFALKTKVLSDVFVGNALIAMYGKFG-FVESAVKVFDKMPQRNLVSWNSVMYAC 272

Query: 309 SQSGDLSEAMKLFSRM--RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
            ++G   E+  LF  +    E + P+  T++ ++  C RQ  +  G+  H   +K GL  
Sbjct: 273 LENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCG 332

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           ++ + ++L++MYSKCG +  +  +F +   ++ +SW ++I GY        A +L  +MQ
Sbjct: 333 ELKVNSSLLDMYSKCGYLCEARVLF-DTNEKNVISWNSMIGGYSKDRDFRGAFELLRKMQ 391

Query: 427 -ESGVEPDAITVLAILSAC 444
            E  V+ + +T+L +L  C
Sbjct: 392 MEDKVKVNEVTLLNVLPVC 410



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 124/228 (54%), Gaps = 6/228 (2%)

Query: 228 KPTRVTLTIVLLACAELRDLRNGKAIHGY-AYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           KP ++ + ++L  C E +++  G+ IH + +    F  D  L   L+ MY  C ++ + +
Sbjct: 91  KPKQL-IGLLLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSIC-DSPYDS 148

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM-RLERIEPNSVTLLAILSSCTR 345
            ++F  ++ K++ +W++++ GY ++    +A+ +F  M  L    P++ TL  ++ +C  
Sbjct: 149 CLVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVG 208

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
              +  G  VH + +K  +  DV +GNAL+ MY K G + S+ ++F++M  R+ VSW ++
Sbjct: 209 VYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSV 268

Query: 406 ISGYGFHGYGEEALQLF--LEMQESGVEPDAITVLAILSACNHAGLVK 451
           +     +G  EE+  LF  L   + G+ PD  T++ ++  C   G V+
Sbjct: 269 MYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVR 316


>gi|212274935|ref|NP_001130299.1| uncharacterized protein LOC100191393 [Zea mays]
 gi|194688780|gb|ACF78474.1| unknown [Zea mays]
 gi|414586171|tpg|DAA36742.1| TPA: hypothetical protein ZEAMMB73_518704 [Zea mays]
          Length = 695

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 189/537 (35%), Positives = 300/537 (55%), Gaps = 8/537 (1%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G+QLH    K G  +D ++ N+LI MY K  + + A ++F  M  R+ +SW +++  F +
Sbjct: 23  GVQLHGAITKMGFGSDTMLGNNLIDMYVKCGELDLACEVFGGMRDRNVVSWTALMVGFLR 82

Query: 107 NGFYVRSLEMFREMYLCGFVLKAE-LLAGIISLCSQIGELELGRQIHALVIVDGSFELSV 165
           +G     L +  EM         E  L+  +  C  +G+   G  IH L +  G  E  V
Sbjct: 83  HGDATGCLRLLGEMRTASEAAPNEYTLSASLKACCVVGDTAAGVGIHGLCVRAGYQEHDV 142

Query: 166 FVSTALLDLYSKCHHWLIALRVFEQMVIRNEV-SWTAMISGCIDSQNYDTGIDLFRAMQR 224
            V+++L+ +YSK      A RVF+   + + + +W AM+SG   + +    + +FR M+R
Sbjct: 143 -VASSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMVSGYAHAGHGRDALLVFREMRR 201

Query: 225 -EGV-KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH--LSAALMHMYCECT 280
            EG  +P   T   +L AC+ L   R G  +H      GF    +  L+ AL+ MY +C 
Sbjct: 202 HEGQHQPDEFTFASLLKACSGLGATREGAQVHAAMTASGFSTASNAILAGALVDMYVKCR 261

Query: 281 EALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAIL 340
             L  A  +FER + K+V+ W++++ G++Q G ++EA++LF R       P+S  L +++
Sbjct: 262 R-LPVAMQVFERLERKNVIQWTAVVVGHAQEGQVTEALELFRRFWRSGARPDSHVLSSVV 320

Query: 341 SSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFV 400
                 + +  G  VHCY +K     DVS GN++++MY KCG    + ++F EM A + V
Sbjct: 321 GVLADFALVEQGRQVHCYGIKDPTGTDVSAGNSIVDMYLKCGLPDEAERMFREMRAPNVV 380

Query: 401 SWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNV 460
           SWTT+++G G HG G EA+ LF EM+  GVEPD +T LA+LSAC+HAGLV E    F+ +
Sbjct: 381 SWTTMVNGLGKHGLGREAVALFEEMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCI 440

Query: 461 MKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEV 520
            +++ +    EHYAC VDLLG++G++ +A  ++ TMPM+P+  +  +L+SACR+H  + V
Sbjct: 441 RRDRTVRPKAEHYACMVDLLGRAGELREARDLIRTMPMEPTVGVWQTLLSACRVHKDVAV 500

Query: 521 AEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
                  L+  + +N  NY  LS V +E+G W    +V   MR +GL K  G S +E
Sbjct: 501 GREAGDVLLAMDGDNPVNYVTLSNVLAEAGEWRECHKVRDAMRRRGLKKQGGCSWVE 557



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 112/221 (50%), Gaps = 5/221 (2%)

Query: 237 VLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK 296
           +L A A    LR G  +HG     GF  D  L   L+ MY +C E L  A  +F   + +
Sbjct: 10  LLRASARSSSLRGGVQLHGAITKMGFGSDTMLGNNLIDMYVKCGE-LDLACEVFGGMRDR 68

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRL-ERIEPNSVTLLAILSSCTRQSFLSHGLGV 355
           +VV W++++ G+ + GD +  ++L   MR      PN  TL A L +C      + G+G+
Sbjct: 69  NVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEYTLSASLKACCVVGDTAAGVGI 128

Query: 356 HCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA-ARDFVSWTTLISGYGFHGY 414
           H   ++AG      + ++L+ +YSK G I  + ++F+         +W  ++SGY   G+
Sbjct: 129 HGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMVSGYAHAGH 188

Query: 415 GEEALQLFLEMQ--ESGVEPDAITVLAILSACNHAGLVKEA 453
           G +AL +F EM+  E   +PD  T  ++L AC+  G  +E 
Sbjct: 189 GRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATREG 229



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 108/244 (44%), Gaps = 15/244 (6%)

Query: 336 LLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA 395
           +  +L +  R S L  G+ +H  I K G   D  +GN L++MY KCG +  + ++F  M 
Sbjct: 7   IAGLLRASARSSSLRGGVQLHGAITKMGFGSDTMLGNNLIDMYVKCGELDLACEVFGGMR 66

Query: 396 ARDFVSWTTLISGYGFHGYGEEALQLFLEMQ-ESGVEPDAITVLAILSACNHAGLVKEAE 454
            R+ VSWT L+ G+  HG     L+L  EM+  S   P+  T+ A L AC   G      
Sbjct: 67  DRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEYTLSASLKACCVVGDTAAGV 126

Query: 455 TLFNNVMKEKKIALAIEHYACYVDLL---GKSGKIEDACKVVSTMPMKPSTRILSSLVS- 510
            +    ++    A   EH      L+    K G+I DA +V     +       +++VS 
Sbjct: 127 GIHGLCVR----AGYQEHDVVASSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMVSG 182

Query: 511 -ACRIHGR---LEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566
            A   HGR   L   EM  H+  + +P+     +LL   CS  G      +V   M A G
Sbjct: 183 YAHAGHGRDALLVFREMRRHE-GQHQPDEFTFASLLK-ACSGLGATREGAQVHAAMTASG 240

Query: 567 LSKS 570
            S +
Sbjct: 241 FSTA 244


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 180/529 (34%), Positives = 297/529 (56%), Gaps = 3/529 (0%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           Q+H   + SG      +    ++      +   A ++FDE P      WN+II  ++ + 
Sbjct: 89  QIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHN 148

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
           F+  ++EM+  M   G       L  ++  CS +  LE+G+++H  +   G FE  VFV 
Sbjct: 149 FFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLG-FESDVFVQ 207

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
             L+ LY+KC     A  VFE +  RN VSWT+MISG   +      + +F  M++  VK
Sbjct: 208 NGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVK 267

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
           P  + L  VL A  ++ DL  GK+IHG     G +F+  L  +L  MY +C + +  AR 
Sbjct: 268 PDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVM-VARS 326

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
            F++ ++ +V++W+++I GY+++G  +EA+ LF  M  + I  +S+T+ + + +C +   
Sbjct: 327 FFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGS 386

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
           L     +  YI K     DV +  AL++M++KCGS+  + ++F+    +D V W+ +I G
Sbjct: 387 LDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVG 446

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468
           YG HG G++A+ LF  M+++GV P+ +T + +L+ACNH+GLV+E   LF++ MK   I  
Sbjct: 447 YGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHS-MKYYGIEA 505

Query: 469 AIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
             +HYAC VDLLG+SG + +A   ++TMP++P   +  +L+ AC+I+  + + E  A QL
Sbjct: 506 RHQHYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVWGALLGACKIYRHVTLGEYAAEQL 565

Query: 529 IEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
              +P N  +Y  LS + + S  W    +V  +MR KGLSK  G+S IE
Sbjct: 566 FSLDPFNTGHYVQLSNLYASSRLWDSVAKVRILMREKGLSKDLGYSLIE 614


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 175/559 (31%), Positives = 311/559 (55%), Gaps = 4/559 (0%)

Query: 23  LYSNTAILPSVIKACAYAQTHQ-HFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           +  +T  L  VI+   YA+T +   G QLH   + +G      ++N L++MY+K  + + 
Sbjct: 1   MLRDTNALAHVIQT--YAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDH 58

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A +LFD MP R+ +SW ++I+  +QN  +  ++  F  M +CG V      +  I  C+ 
Sbjct: 59  ALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACAS 118

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
           +G +E+G+Q+H L +  G     +FV + L D+YSKC     A +VFE+M  ++EVSWTA
Sbjct: 119 LGSIEMGKQMHCLALKFG-IGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTA 177

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           MI G      ++  +  F+ M  E V   +  L   L AC  L+  + G+++H      G
Sbjct: 178 MIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLG 237

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
           F+ D  +  AL  MY +  +    + +    ++ ++VV ++ +I GY ++  + + + +F
Sbjct: 238 FESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVF 297

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
             +R + IEPN  T  +++ +C  Q+ L  G  +H  +MK   + D  + + L++MY KC
Sbjct: 298 VELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKC 357

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
           G +  + Q F+E+     ++W +L+S +G HG G++A++ F  M + GV+P+AIT +++L
Sbjct: 358 GLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITFISLL 417

Query: 442 SACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPS 501
           + C+HAGLV+E    F ++ K   +    EHY+C +DLLG++G++++A + ++ MP +P+
Sbjct: 418 TGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPN 477

Query: 502 TRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRV 561
                S + ACRIHG  E+ ++ A +L++ EP+N+    LLS + +    W     V   
Sbjct: 478 AFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMR 537

Query: 562 MRAKGLSKSYGFSRIENEY 580
           MR   + K  G+S ++  Y
Sbjct: 538 MRDGNVKKLPGYSWVDVGY 556



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 65/132 (49%), Gaps = 1/132 (0%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           EL   G+  N     S+IKACA  Q     G QLH   +K   D DP +S+ L+ MY K 
Sbjct: 299 ELRRQGIEPNEFTFSSLIKACA-NQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKC 357

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
              E A Q FDE+     I+WNS+++ F Q+G    +++ F  M   G    A     ++
Sbjct: 358 GLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITFISLL 417

Query: 137 SLCSQIGELELG 148
           + CS  G +E G
Sbjct: 418 TGCSHAGLVEEG 429


>gi|449522418|ref|XP_004168223.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Cucumis sativus]
          Length = 743

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 171/520 (32%), Positives = 303/520 (58%), Gaps = 2/520 (0%)

Query: 58  GSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMF 117
           G ++D  +SNS+++MY K  +   A +LF+ +  RD +SWNS+++ +++ G     L++ 
Sbjct: 177 GFESDLALSNSMVNMYGKCGRIADARRLFESIGCRDIVSWNSLLSAYSKIGATEEILQLL 236

Query: 118 REMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSK 177
           + M +       +     +S  +  G+L LG+ +H L++ DG   +   V +AL+ LY +
Sbjct: 237 QAMKIEDIKPDKQTFCSALSASAIKGDLRLGKLVHGLMLKDG-LNIDQHVESALVVLYLR 295

Query: 178 CHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIV 237
           C     A +VF+    ++ V WTAMISG + +   D  + +F  M    VKP+  TL   
Sbjct: 296 CRCLDPAYKVFKSTTEKDVVMWTAMISGLVQNDCADKALGVFYQMIESNVKPSTATLASG 355

Query: 238 LLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKD 297
           L ACA+L     G +IHGY    G   D     +L+ MY +C + L  +  IF +   KD
Sbjct: 356 LAACAQLGCCDIGASIHGYVLRQGIMLDIPAQNSLVTMYAKCNK-LQQSCSIFNKMVEKD 414

Query: 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHC 357
           +V W++I+ G++++G LS+ +  F+ MR   + P+S+T+ ++L +C     L  G  +H 
Sbjct: 415 LVSWNAIVAGHAKNGYLSKGIFFFNEMRKSFLRPDSITVTSLLQACGSAGALCQGKWIHN 474

Query: 358 YIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEE 417
           +++++ L   +    AL++MY KCG++ ++ + F+ M  RD V+W+TLI GYGF+G GE 
Sbjct: 475 FVLRSSLIPCIMTETALVDMYFKCGNLENAQKCFDCMLQRDLVAWSTLIVGYGFNGKGEI 534

Query: 418 ALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYV 477
           AL+ + E   +G+EP+ +  +++LSAC+H GL+ +  +++ ++ K+ +++  +EH AC V
Sbjct: 535 ALRKYSEFLGTGMEPNHVIFISVLSACSHGGLISKGLSIYESMTKDFRMSPNLEHRACVV 594

Query: 478 DLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAA 537
           DLL ++GK+++A      M  +PS  +L  L+ ACR++GR+E+ +++A  + E +P +  
Sbjct: 595 DLLSRAGKVDEAYSFYKMMFKEPSIVVLGMLLDACRVNGRVELGKVIARDMFELKPVDPG 654

Query: 538 NYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           N+  L+   +    W G E+ W  MR+ GL K  G+S IE
Sbjct: 655 NFVQLANSYASMSRWDGVEKAWTQMRSLGLKKYPGWSSIE 694



 Score =  251 bits (640), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 164/523 (31%), Positives = 277/523 (52%), Gaps = 11/523 (2%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEM 89
            PS+ KAC       H GL LH + + +G   D  I +SLIS YAKF       ++FD M
Sbjct: 52  FPSLFKACTNLNLFSH-GLSLHQSVVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTM 110

Query: 90  PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGR 149
             R+ + W +II  +++ G    +  MF++M   G    +  L   +SL   I +L L  
Sbjct: 111 LKRNVVPWTTIIGSYSREGDIDIAFSMFKQMRESGIQPTSVTL---LSLLPGISKLPLLL 167

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
            +H L+I+ G FE  + +S +++++Y KC     A R+FE +  R+ VSW +++S     
Sbjct: 168 CLHCLIILHG-FESDLALSNSMVNMYGKCGRIADARRLFESIGCRDIVSWNSLLSAYSKI 226

Query: 210 QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS 269
              +  + L +AM+ E +KP + T    L A A   DLR GK +HG     G + D H+ 
Sbjct: 227 GATEEILQLLQAMKIEDIKPDKQTFCSALSASAIKGDLRLGKLVHGLMLKDGLNIDQHVE 286

Query: 270 AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
           +AL+ +Y  C   L PA  +F+ T  KDVV+W+++I G  Q+    +A+ +F +M    +
Sbjct: 287 SALVVLYLRC-RCLDPAYKVFKSTTEKDVVMWTAMISGLVQNDCADKALGVFYQMIESNV 345

Query: 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
           +P++ TL + L++C +      G  +H Y+++ G+  D+   N+L+ MY+KC  +  S  
Sbjct: 346 KPSTATLASGLAACAQLGCCDIGASIHGYVLRQGIMLDIPAQNSLVTMYAKCNKLQQSCS 405

Query: 390 IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL 449
           IFN+M  +D VSW  +++G+  +GY  + +  F EM++S + PD+ITV ++L AC  AG 
Sbjct: 406 IFNKMVEKDLVSWNAIVAGHAKNGYLSKGIFFFNEMRKSFLRPDSITVTSLLQACGSAGA 465

Query: 450 VKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLV 509
           + + + + N V++   I   +   A  VD+  K G +E+A K    M ++      S+L+
Sbjct: 466 LCQGKWIHNFVLRSSLIPCIMTETA-LVDMYFKCGNLENAQKCFDCM-LQRDLVAWSTLI 523

Query: 510 SACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLSMVCSESG 550
                +G+ E+A     + +    EP +    ++LS  CS  G
Sbjct: 524 VGYGFNGKGEIALRKYSEFLGTGMEPNHVIFISVLS-ACSHGG 565



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 174/354 (49%), Gaps = 9/354 (2%)

Query: 45  HFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCF 104
             G  +H   LK G + D  + ++L+ +Y +    + AY++F     +D + W ++I+  
Sbjct: 265 RLGKLVHGLMLKDGLNIDQHVESALVVLYLRCRCLDPAYKVFKSTTEKDVVMWTAMISGL 324

Query: 105 TQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELS 164
            QN    ++L +F +M           LA  ++ C+Q+G  ++G  IH  V+  G   L 
Sbjct: 325 VQNDCADKALGVFYQMIESNVKPSTATLASGLAACAQLGCCDIGASIHGYVLRQG-IMLD 383

Query: 165 VFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR 224
           +    +L+ +Y+KC+    +  +F +MV ++ VSW A+++G   +     GI  F  M++
Sbjct: 384 IPAQNSLVTMYAKCNKLQQSCSIFNKMVEKDLVSWNAIVAGHAKNGYLSKGIFFFNEMRK 443

Query: 225 EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
             ++P  +T+T +L AC     L  GK IH +              AL+ MY +C   L 
Sbjct: 444 SFLRPDSITVTSLLQACGSAGALCQGKWIHNFVLRSSLIPCIMTETALVDMYFKCGN-LE 502

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
            A+  F+    +D+V WS++I GY  +G    A++ +S      +EPN V  +++LS+C+
Sbjct: 503 NAQKCFDCMLQRDLVAWSTLIVGYGFNGKGEIALRKYSEFLGTGMEPNHVIFISVLSACS 562

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIG----NALMNMYSKCGSITSSHQIFNEM 394
               +S GL ++  + K   +F +S        ++++ S+ G +  ++  +  M
Sbjct: 563 HGGLISKGLSIYESMTK---DFRMSPNLEHRACVVDLLSRAGKVDEAYSFYKMM 613



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 129/243 (53%), Gaps = 4/243 (1%)

Query: 221 AMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECT 280
           +MQ+   +    T   +  AC  L    +G ++H      G   D ++ ++L+  Y +  
Sbjct: 39  SMQKTHTQLDAYTFPSLFKACTNLNLFSHGLSLHQSVVVNGLSHDSYIGSSLISFYAK-F 97

Query: 281 EALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAIL 340
             +H  R +F+    ++VV W++II  YS+ GD+  A  +F +MR   I+P SVTLL++L
Sbjct: 98  GCIHLGRKVFDTMLKRNVVPWTTIIGSYSREGDIDIAFSMFKQMRESGIQPTSVTLLSLL 157

Query: 341 SSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFV 400
              ++   L   L +HC I+  G   D+++ N+++NMY KCG I  + ++F  +  RD V
Sbjct: 158 PGISK---LPLLLCLHCLIILHGFESDLALSNSMVNMYGKCGRIADARRLFESIGCRDIV 214

Query: 401 SWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNV 460
           SW +L+S Y   G  EE LQL   M+   ++PD  T  + LSA    G ++  + +   +
Sbjct: 215 SWNSLLSAYSKIGATEEILQLLQAMKIEDIKPDKQTFCSALSASAIKGDLRLGKLVHGLM 274

Query: 461 MKE 463
           +K+
Sbjct: 275 LKD 277



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 119/230 (51%), Gaps = 4/230 (1%)

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           ++S++   S  G   + ++ +  M+    + ++ T  ++  +CT  +  SHGL +H  ++
Sbjct: 17  FNSLVSRLSYQGAHHQVLQTYISMQKTHTQLDAYTFPSLFKACTNLNLFSHGLSLHQSVV 76

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
             GL+ D  IG++L++ Y+K G I    ++F+ M  R+ V WTT+I  Y   G  + A  
Sbjct: 77  VNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIGSYSREGDIDIAFS 136

Query: 421 LFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLL 480
           +F +M+ESG++P ++T+L++L   +   L+     L      E  +AL+       V++ 
Sbjct: 137 MFKQMRESGIQPTSVTLLSLLPGISKLPLLLCLHCLIILHGFESDLALS----NSMVNMY 192

Query: 481 GKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE 530
           GK G+I DA ++  ++  +      S L +  +I    E+ ++L    IE
Sbjct: 193 GKCGRIADARRLFESIGCRDIVSWNSLLSAYSKIGATEEILQLLQAMKIE 242



 Score = 38.5 bits (88), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 71/147 (48%), Gaps = 7/147 (4%)

Query: 401 SWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNV 460
           S+ +L+S   + G   + LQ ++ MQ++  + DA T  ++  AC +  L     +L  +V
Sbjct: 16  SFNSLVSRLSYQGAHHQVLQTYISMQKTHTQLDAYTFPSLFKACTNLNLFSHGLSLHQSV 75

Query: 461 MKEKKIALAIEHY--ACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRL 518
           +      L+ + Y  +  +    K G I    KV  TM +K +    ++++ +    G +
Sbjct: 76  VVN---GLSHDSYIGSSLISFYAKFGCIHLGRKVFDTM-LKRNVVPWTTIIGSYSREGDI 131

Query: 519 EVAEMLAHQLIEAEPENAANYTLLSMV 545
           ++A  +  Q+ E+  +   + TLLS++
Sbjct: 132 DIAFSMFKQMRESGIQ-PTSVTLLSLL 157


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 195/574 (33%), Positives = 319/574 (55%), Gaps = 10/574 (1%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           ++++ L+LY + L   G+  +    P V++ C         G ++H   ++ G ++D  +
Sbjct: 175 YFDEALNLYHRMLW-VGIRPDVYTFPCVLRTCGGLPDLAR-GREVHLHVIRYGFESDVDV 232

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
            N+LI+MY K     SA  +FD MP RD ISWN++I+ + +N   +  L +F  M    F
Sbjct: 233 VNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMR--EF 290

Query: 126 VLKAELLA--GIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
            +  +L+    +IS C  +G+  LGR++H  VI  G F   V V+ +L+ ++S    W  
Sbjct: 291 FVDPDLMTMTSVISACEALGDERLGREVHGYVIKTG-FVAEVSVNNSLIQMHSSVGCWDE 349

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
           A  VF +M  ++ VSWTAMISG   +   +  ++ +  M+ EGV P  +T+  VL ACA 
Sbjct: 350 AEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAG 409

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
           L  L  G  +H +A   G      ++ +L+ MY +C   +  A  +F R   K+V+ W+S
Sbjct: 410 LGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKC-RCIDKALEVFHRIPNKNVISWTS 468

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           II G   +    EA+  F +M L  ++PNSVTL+++LS+C R   LS G  +H + ++ G
Sbjct: 469 IILGLRLNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTG 527

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
           L FD  + NAL++MY +CG +  +   FN    +D  SW  L++GY   G G  A++LF 
Sbjct: 528 LGFDGFLPNALLDMYVRCGRMEPAWNQFNS-CEKDVASWNILLTGYAQQGKGGLAVELFH 586

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS 483
           +M ES V PD IT  ++L AC+ +G+V +    F ++  +  IA  ++HYA  VDLLG++
Sbjct: 587 KMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRA 646

Query: 484 GKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLS 543
           G++EDA + +  MP+ P   I  +L++ACRI+  +E+ E+ A  + E + ++   Y LL 
Sbjct: 647 GRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLC 706

Query: 544 MVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            + ++SG W     V ++MR   L+   G S +E
Sbjct: 707 NLYADSGKWDEVARVRKIMRENRLTVDPGCSWVE 740



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 141/522 (27%), Positives = 274/522 (52%), Gaps = 12/522 (2%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPY 91
           ++++ C + +     G ++H    K+ +     + N+L+SM+ +F     A+ +F +M  
Sbjct: 99  ALLRLCEWKRAASE-GSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAE 157

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQI 151
           RD  SWN ++  + + G++  +L ++  M   G          ++  C  + +L  GR++
Sbjct: 158 RDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREV 217

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQN 211
           H  VI  G FE  V V  AL+ +Y KC     A  VF++M  R+ +SW AMISG  ++  
Sbjct: 218 HLHVIRYG-FESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDV 276

Query: 212 YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAA 271
              G+ LF  M+   V P  +T+T V+ AC  L D R G+ +HGY    GF  +  ++ +
Sbjct: 277 CLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNS 336

Query: 272 LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP 331
           L+ M+         A ++F + + KD+V W+++I GY ++G   +A++ ++ M  E + P
Sbjct: 337 LIQMH-SSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVP 395

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIF 391
           + +T+ ++LS+C     L  G+ +H +  + GL   V + N+L++MYSKC  I  + ++F
Sbjct: 396 DEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVF 455

Query: 392 NEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVK 451
           + +  ++ +SWT++I G   +    EAL  F +M  S ++P+++T++++LSAC   G + 
Sbjct: 456 HRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIGALS 514

Query: 452 EAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLV 509
             + +  + +   +  L  + +     +D+  + G++E A    ++     ++   + L+
Sbjct: 515 CGKEIHAHAL---RTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSCEKDVAS--WNILL 569

Query: 510 SACRIHGRLEVAEMLAHQLIEAE-PENAANYTLLSMVCSESG 550
           +     G+  +A  L H++IE++   +   +T L   CS SG
Sbjct: 570 TGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSG 611



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 122/448 (27%), Positives = 222/448 (49%), Gaps = 8/448 (1%)

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
           ++ E    ++ LC        G ++H+ V    +  L V +  ALL ++ +    + A  
Sbjct: 92  VEEETYIALLRLCEWKRAASEGSRVHSYVSKTVT-RLGVRLGNALLSMFVRFGDLVEAWY 150

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VF +M  R+  SW  ++ G   +  +D  ++L+  M   G++P   T   VL  C  L D
Sbjct: 151 VFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPD 210

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L  G+ +H +    GF+ D  +  AL+ MY +C + +  AR++F+R   +D + W+++I 
Sbjct: 211 LARGREVHLHVIRYGFESDVDVVNALITMYVKCGD-IFSARLVFDRMPRRDRISWNAMIS 269

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           GY ++    E ++LF  MR   ++P+ +T+ +++S+C        G  VH Y++K G   
Sbjct: 270 GYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVA 329

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           +VS+ N+L+ M+S  G    +  +F++M  +D VSWT +ISGY  +G  E+A++ +  M+
Sbjct: 330 EVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIME 389

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
             GV PD IT+ ++LSAC   GL+ +   L     +    +  I   +  +D+  K   I
Sbjct: 390 HEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANS-LIDMYSKCRCI 448

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546
           + A +V   +P K +    +S++   R++ R   A     Q+I +   N+     +   C
Sbjct: 449 DKALEVFHRIPNK-NVISWTSIILGLRLNYRSFEALFFFQQMILSLKPNSVTLVSVLSAC 507

Query: 547 SESGNWLGAEEVWRVMRAKGLSKSYGFS 574
           +     +GA    + + A  L    GF 
Sbjct: 508 AR----IGALSCGKEIHAHALRTGLGFD 531



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 140/291 (48%), Gaps = 8/291 (2%)

Query: 183 IALRVFEQMVIRNEVSWTA------MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTI 236
           I+LR   ++ + N  S TA      ++  C+   + +  +    +MQ   V     T   
Sbjct: 41  ISLRKHHEISVLNPSSITAQNPNSLILELCLKG-DLEKALIHLDSMQELQVSVEEETYIA 99

Query: 237 VLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK 296
           +L  C   R    G  +H Y           L  AL+ M+    + L  A  +F +   +
Sbjct: 100 LLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGD-LVEAWYVFGKMAER 158

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVH 356
           D+  W+ ++ GY+++G   EA+ L+ RM    I P+  T   +L +C     L+ G  VH
Sbjct: 159 DLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVH 218

Query: 357 CYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGE 416
            ++++ G   DV + NAL+ MY KCG I S+  +F+ M  RD +SW  +ISGY  +    
Sbjct: 219 LHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCL 278

Query: 417 EALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIA 467
           E L+LF  M+E  V+PD +T+ +++SAC   G  +    +   V+K   +A
Sbjct: 279 EGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVA 329


>gi|147769567|emb|CAN65709.1| hypothetical protein VITISV_020733 [Vitis vinifera]
          Length = 609

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 191/573 (33%), Positives = 313/573 (54%), Gaps = 6/573 (1%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V++ +  + L L++Q +  +GL  N    PSV KAC+     ++  + +H   +KS   A
Sbjct: 30  VNQGYAHKALLLFRQ-MKQNGLEPNNLTFPSVAKACSKLLNLKYSQI-VHTHVVKSRFQA 87

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D  +  S++ MY K S+   AY LF  MP RD  SWNS+I  F Q GF  R + +F EM 
Sbjct: 88  DLFVQTSVVDMYVKCSQLGFAYNLFSRMPXRDVASWNSMIXGFAQLGFVDRVVSLFCEMG 147

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
           + G    +  + G+      + +L++   IH+  I  G  +  V VS   +  Y+KC  +
Sbjct: 148 IEGIRADSVTVIGLTHSALSLKDLKMLESIHSFGIKIG-IDTDVSVSNTWIAAYAKCGEF 206

Query: 182 LIALRVFEQMV--IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLL 239
            +A  VF+ +   ++  VSW +MI+G    +     +  F+ M   G +    T+  +L 
Sbjct: 207 GLAETVFDGIDKGLKTXVSWNSMIAGYAHFEQCSKAVGFFKKMLXGGFRADLSTILSLLS 266

Query: 240 ACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVV 299
           +C +   L +GK IH +    G D D  +   L+ MY +C + +  AR +F+    K  V
Sbjct: 267 SCVQPEVLFHGKLIHAHGIQVGCDSDIQVINTLISMYSKCGD-IGSARYLFDNMLGKTRV 325

Query: 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
            W+++I G ++ GDL EAM LFS M     +P+ VT+++++S C +   L  G  +  Y 
Sbjct: 326 SWTAMIAGXAEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTGALELGKWIDTYA 385

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEAL 419
              GL  ++ + NAL+++Y+KCGS+ ++ ++F  M  +  VSWTTLI+G   +G  +EAL
Sbjct: 386 TANGLKDNLMVCNALIDVYAKCGSMDNARELFYTMPEKSLVSWTTLIAGCALNGEFKEAL 445

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479
            LF +M E G++P+ IT LA+L ACNHAG +++    FN + K  KI   ++HY+C  DL
Sbjct: 446 GLFFQMVELGLKPNHITFLAVLQACNHAGFLEKGWECFNLMTKVYKINPGLDHYSCMADL 505

Query: 480 LGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANY 539
           LG+ G++++A + +  MP KP   I S L+SAC+IH  + + E +A+ L E EP+ A  Y
Sbjct: 506 LGRKGRLKEAFEFIQNMPFKPDVGIWSVLLSACKIHQNVVIGECVAYHLFELEPQTAVPY 565

Query: 540 TLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYG 572
             ++ + + +G W     +  +M+     KS G
Sbjct: 566 VQMANIYASAGKWDRVAAIRTMMKCNKAMKSSG 598



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 133/462 (28%), Positives = 232/462 (50%), Gaps = 25/462 (5%)

Query: 81  SAYQLFDEMPYRDTIS-WNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLC 139
           +A Q F+      T++ WNS I      G+  ++L +FR+M   G          +   C
Sbjct: 5   AATQSFNRFSNLWTVAQWNSSITESVNQGYAHKALLLFRQMKQNGLEPNNLTFPSVAKAC 64

Query: 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSW 199
           S++  L+  + +H  V V   F+  +FV T+++D+Y KC     A  +F +M  R+  SW
Sbjct: 65  SKLLNLKYSQIVHTHV-VKSRFQADLFVQTSVVDMYVKCSQLGFAYNLFSRMPXRDVASW 123

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
            +MI G       D  + LF  M  EG++   VT+  +  +   L+DL+  ++IH +   
Sbjct: 124 NSMIXGFAQLGFVDRVVSLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLESIHSFGIK 183

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFE--RTKVKDVVIWSSIIRGYSQSGDLSEA 317
            G D D  +S   +  Y +C E    A  +F+     +K  V W+S+I GY+     S+A
Sbjct: 184 IGIDTDVSVSNTWIAAYAKCGE-FGLAETVFDGIDKGLKTXVSWNSMIAGYAHFEQCSKA 242

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
           +  F +M       +  T+L++LSSC +   L HG  +H + ++ G + D+ + N L++M
Sbjct: 243 VGFFKKMLXGGFRADLSTILSLLSSCVQPEVLFHGKLIHAHGIQVGCDSDIQVINTLISM 302

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           YSKCG I S+  +F+ M  +  VSWT +I+G    G  +EA+ LF  M+  G +PD +T+
Sbjct: 303 YSKCGDIGSARYLFDNMLGKTRVSWTAMIAGXAEKGDLDEAMTLFSAMEAVGEKPDLVTI 362

Query: 438 LAILSACNHAGLVK---------EAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIED 488
           ++++S C   G ++          A  L +N+M    +          +D+  K G +++
Sbjct: 363 ISLMSGCGQTGALELGKWIDTYATANGLKDNLMVCNAL----------IDVYAKCGSMDN 412

Query: 489 ACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE 530
           A ++  TMP K S    ++L++ C ++G  + A  L  Q++E
Sbjct: 413 ARELFYTMPEK-SLVSWTTLIAGCALNGEFKEALGLFFQMVE 453



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/413 (23%), Positives = 186/413 (45%), Gaps = 53/413 (12%)

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258
           W + I+  ++       + LFR M++ G++P  +T   V  AC++L +L+  + +H +  
Sbjct: 22  WNSSITESVNQGYAHKALLLFRQMKQNGLEPNNLTFPSVAKACSKLLNLKYSQIVHTHVV 81

Query: 259 CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAM 318
              F  D  +  +++ MY +C++ L  A  +F R   +DV  W+S+I G++Q G +   +
Sbjct: 82  KSRFQADLFVQTSVVDMYVKCSQ-LGFAYNLFSRMPXRDVASWNSMIXGFAQLGFVDRVV 140

Query: 319 KLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMY 378
            LF  M +E I  +SVT++ +  S      L     +H + +K G++ DVS+ N  +  Y
Sbjct: 141 SLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLESIHSFGIKIGIDTDVSVSNTWIAAY 200

Query: 379 SKCGSITSSHQIFN--EMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG------- 429
           +KCG    +  +F+  +   +  VSW ++I+GY       +A+  F +M   G       
Sbjct: 201 AKCGEFGLAETVFDGIDKGLKTXVSWNSMIAGYAHFEQCSKAVGFFKKMLXGGFRADLST 260

Query: 430 --------VEPDAI-----------------------TVLAILSACNHAGLVKEAETLFN 458
                   V+P+ +                       T++++ S C   G +  A  LF+
Sbjct: 261 ILSLLSSCVQPEVLFHGKLIHAHGIQVGCDSDIQVINTLISMYSKC---GDIGSARYLFD 317

Query: 459 NVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPM---KPSTRILSSLVSACRIH 515
           N++ + +++     +   +    + G +++A  + S M     KP    + SL+S C   
Sbjct: 318 NMLGKTRVS-----WTAMIAGXAEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQT 372

Query: 516 GRLEVAEML-AHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567
           G LE+ + +  +       +N      L  V ++ G+   A E++  M  K L
Sbjct: 373 GALELGKWIDTYATANGLKDNLMVCNALIDVYAKCGSMDNARELFYTMPEKSL 425


>gi|50251760|dbj|BAD27693.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|222623393|gb|EEE57525.1| hypothetical protein OsJ_07836 [Oryza sativa Japonica Group]
          Length = 667

 Score =  328 bits (842), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 182/550 (33%), Positives = 294/550 (53%), Gaps = 6/550 (1%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEM 89
            P   KACA  +  +H G  +HC AL +G   D  + N+LISMY       +A  +F  M
Sbjct: 111 FPFAAKACAGLRLGRH-GRAVHCRALAAGFGGDTYVQNALISMYMSCGDVGAAEAVFGAM 169

Query: 90  PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGR 149
             R  +SWN++I    +NG+  R+LE+F EM   G  +    +  ++  C+Q  +L  GR
Sbjct: 170 RNRTVVSWNAVIAGCVKNGYAERALEVFGEMAADGVGIDRATVVSVLPACAQAKDLNTGR 229

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV-IRNEVSWTAMISGCID 208
            +H LV  D      V V  AL+D+Y KC     A RVF+     ++ VSWTAMI   + 
Sbjct: 230 AVHRLV-EDKGLGDYVAVKNALIDMYGKCRSLEDARRVFDHCKHDKDVVSWTAMIGAYVL 288

Query: 209 SQNYDTGIDLFRAMQREGVK-PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
           +      I L   M   G   P  VT+  +L ACA +   ++ K  H      G   D  
Sbjct: 289 NDRAFEAISLGCQMLMSGAAWPNGVTMVYLLSACASMPSGKHAKCTHALCIRLGLKSDIA 348

Query: 268 LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
           +  AL+  Y  C + +   R+  ER   +    W++ + GY+ SG   +A++LF RM  E
Sbjct: 349 VETALIDAYARCGK-MKLMRLTLERGSWR-AETWNAALSGYTVSGREKKAIELFKRMIAE 406

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
            + P+S T+ +IL +    + L  G  +HC+++  G      I   L+++YSK G + ++
Sbjct: 407 SVRPDSATMASILPAYAESADLKEGKNIHCFLLTLGFLRSTEIATGLIDVYSKAGDLDAA 466

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHA 447
             +F  +  +D V+WTT+I+GYG HG+   A+ L+  M ESG +P+ +T+  +L AC+HA
Sbjct: 467 WALFQWLPEKDVVAWTTIIAGYGIHGHARTAILLYDRMVESGGKPNTVTIATLLYACSHA 526

Query: 448 GLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSS 507
           G++ E   +F ++     +    EHY+C VD+LG++G+IE+A +++  MP +PST +  +
Sbjct: 527 GMIDEGIKVFKDMRNVHGLMPNGEHYSCLVDMLGRAGRIEEAHRLIQDMPFEPSTSVWGA 586

Query: 508 LVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567
           L+ AC +H  +E  E+ A +L + +PEN  +Y LL  + + +  W   ++V R+M  +GL
Sbjct: 587 LLGACVLHKNVEFGEVAAKRLFQLDPENTGSYVLLGNIYAAADRWRDVQDVRRMMVERGL 646

Query: 568 SKSYGFSRIE 577
            K  G S +E
Sbjct: 647 LKEPGSSLVE 656



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 141/510 (27%), Positives = 244/510 (47%), Gaps = 31/510 (6%)

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISW-NSIINCFTQNGFYVRSLEMFREMYL--- 122
           + L  +Y    +P SA+ L  +MP    +S+ NS++  +T  G +  +L ++  M     
Sbjct: 49  HPLFMVYCACGRPSSAHNLLAQMPQPPPVSFSNSLLRSYTGLGCHREALAVYSAMRAFDH 108

Query: 123 CGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL 182
             F   A+  AG+     ++G    GR +H   +  G F    +V  AL+ +Y  C    
Sbjct: 109 LTFPFAAKACAGL-----RLG--RHGRAVHCRALAAG-FGGDTYVQNALISMYMSCGDVG 160

Query: 183 IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
            A  VF  M  R  VSW A+I+GC+ +   +  +++F  M  +GV   R T+  VL ACA
Sbjct: 161 AAEAVFGAMRNRTVVSWNAVIAGCVKNGYAERALEVFGEMAADGVGIDRATVVSVLPACA 220

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTK-VKDVVIW 301
           + +DL  G+A+H      G      +  AL+ MY +C  +L  AR +F+  K  KDVV W
Sbjct: 221 QAKDLNTGRAVHRLVEDKGLGDYVAVKNALIDMYGKC-RSLEDARRVFDHCKHDKDVVSW 279

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIE-PNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           +++I  Y  +    EA+ L  +M +     PN VT++ +LS+C       H    H   +
Sbjct: 280 TAMIGAYVLNDRAFEAISLGCQMLMSGAAWPNGVTMVYLLSACASMPSGKHAKCTHALCI 339

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
           + GL  D+++  AL++ Y++CG +          + R   +W   +SGY   G  ++A++
Sbjct: 340 RLGLKSDIAVETALIDAYARCGKMKLMRLTLERGSWR-AETWNAALSGYTVSGREKKAIE 398

Query: 421 LFLEMQESGVEPDAITVLAILSACNHAGLVKEAET-----LFNNVMKEKKIALAIEHYAC 475
           LF  M    V PD+ T+ +IL A   +  +KE +      L    ++  +IA  +     
Sbjct: 399 LFKRMIAESVRPDSATMASILPAYAESADLKEGKNIHCFLLTLGFLRSTEIATGL----- 453

Query: 476 YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EP 533
            +D+  K+G ++ A  +   +P K      +++++   IHG    A +L  +++E+  +P
Sbjct: 454 -IDVYSKAGDLDAAWALFQWLPEK-DVVAWTTIIAGYGIHGHARTAILLYDRMVESGGKP 511

Query: 534 ENAANYTLLSMVCSESGNWLGAEEVWRVMR 563
                 TLL   CS +G      +V++ MR
Sbjct: 512 NTVTIATLL-YACSHAGMIDEGIKVFKDMR 540


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 188/532 (35%), Positives = 292/532 (54%), Gaps = 8/532 (1%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYA--KFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           Q+H   L++G   DP  ++ +++  +  +    + A  +F ++P   + + NSII   T 
Sbjct: 6   QIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSIIRGCTD 65

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
              +  +L  ++EM + G +        +   C    E   G+QIH      G F    +
Sbjct: 66  KNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNSSE---GKQIHCHSTKLG-FASDTY 121

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLF-RAMQRE 225
               L+++YS C   + A +VF++M  +  VSW  MI         +  + LF R M+ E
Sbjct: 122 AQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSE 181

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
            VKP  VTL  VL ACA  RDL   K IH Y    GF     L+  LM +YC+C   +  
Sbjct: 182 NVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCG-CVQL 240

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           AR +F++ + K++  W+ +I G+ +  +  EA+ LF  M+ + I+ + VT+ ++L +CT 
Sbjct: 241 ARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTH 300

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
              L  G  +H YI K  ++ DV++G AL++MY+KCGSI ++ Q+F+EM  +D ++WT L
Sbjct: 301 LGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTAL 360

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           I G    G  E ALQ F EM   GV+PDAIT + +L+AC+HAG V E  + FN++     
Sbjct: 361 ILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYG 420

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
           I   IEHY   VD+LG++G+I +A +++ +MPM P   +L  L+ ACRIHG LE AE  A
Sbjct: 421 IQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAAERAA 480

Query: 526 HQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            QL+E +P ++  Y LLS +   S  W  A+    +M  +G+ K  G S+IE
Sbjct: 481 KQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQIE 532



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 118/421 (28%), Positives = 212/421 (50%), Gaps = 12/421 (2%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
             K+ +++ L L+ QE+   GL  +    PS+ K+C  +      G Q+HC + K G  +
Sbjct: 64  TDKNLHQEAL-LFYQEMMVQGLIPDRYTFPSLFKSCRNSSE----GKQIHCHSTKLGFAS 118

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D    N+L++MY+      SA ++FD+M  +  +SW ++I    Q      ++ +F  M 
Sbjct: 119 DTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMM 178

Query: 122 LCGFVLKAEL-LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
               V   E+ L  +++ C++  +L + ++IH  +   G F   V ++T L+D+Y KC  
Sbjct: 179 KSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHG-FGRHVVLNTVLMDVYCKCGC 237

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
             +A  +F++   +N  SW  MI+G ++  NY+  + LFR MQ +G+K  +VT+  +LLA
Sbjct: 238 VQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLA 297

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
           C  L  L  GK +H Y      D D  L  AL+ MY +C  ++  A  +F     KDV+ 
Sbjct: 298 CTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCG-SIETAIQVFHEMPEKDVMT 356

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           W+++I G +  G    A++ F  M ++ ++P+++T + +L++C+   F+  G+  H   M
Sbjct: 357 WTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGIS-HFNSM 415

Query: 361 KA--GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA-ARDFVSWTTLISGYGFHGYGEE 417
               G+   +     L+++  + G I  + ++   M  A D      L+     HG  E 
Sbjct: 416 SDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEA 475

Query: 418 A 418
           A
Sbjct: 476 A 476


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 176/532 (33%), Positives = 298/532 (56%), Gaps = 6/532 (1%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G  +H  A+  G D++ ++ ++++ MY KF + E A ++FD MP +DTI WN++I+ + +
Sbjct: 138 GRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRK 197

Query: 107 NGFYVRSLEMFREMYLCGFV-LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSV 165
           N  YV S+++FR++       L    L  I+   +++ EL LG QIH+L    G +    
Sbjct: 198 NEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHD- 256

Query: 166 FVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
           +V T  + LYSKC    +   +F +    + V++ AMI G   +   +  + LF+ +   
Sbjct: 257 YVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLS 316

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
           G +    TL  ++     L  +    AIHGY     F     +S AL  +Y +  E +  
Sbjct: 317 GARLRSSTLVSLVPVSGHLMLIY---AIHGYCLKSNFLSHASVSTALTTVYSKLNE-IES 372

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           AR +F+ +  K +  W+++I GY+Q+G   +A+ LF  M+     PN VT+  ILS+C +
Sbjct: 373 ARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQ 432

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
              LS G  VH  +        + +  AL+ MY+KCGSI  + ++F+ M  ++ V+W T+
Sbjct: 433 LGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTM 492

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           ISGYG HG G+EAL +F EM  SG+ P  +T L +L AC+HAGLVKE + +FN+++    
Sbjct: 493 ISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYG 552

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
              +++HYAC VD+LG++G ++ A + +  M ++P + +  +L+ ACRIH    +A  ++
Sbjct: 553 FEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVS 612

Query: 526 HQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +L E +P+N   + LLS + S   N+  A  V +  + + L+K+ G++ IE
Sbjct: 613 EKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIE 664



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 125/528 (23%), Positives = 237/528 (44%), Gaps = 15/528 (2%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           Q H   +  G   D  +   L    +       A  +F  +   D   +N ++  F+ N 
Sbjct: 38  QTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNE 97

Query: 109 FYVRSLEMFREMYL-CGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFV 167
               SL +F  +         +   A  IS  S   +   GR IH   +VDG  +  + +
Sbjct: 98  SPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGC-DSELLL 156

Query: 168 STALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG- 226
            + ++ +Y K      A +VF++M  ++ + W  MISG   ++ Y   I +FR +  E  
Sbjct: 157 GSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESC 216

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
            +    TL  +L A AEL++LR G  IH  A   G     ++    + +Y +C + +   
Sbjct: 217 TRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGK-IKMG 275

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
             +F   +  D+V ++++I GY+ +G+   ++ LF  + L      S TL++++      
Sbjct: 276 SALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHL 335

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
             +     +H Y +K+      S+  AL  +YSK   I S+ ++F+E   +   SW  +I
Sbjct: 336 MLI---YAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMI 392

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
           SGY  +G  E+A+ LF EMQ+S   P+ +T+  ILSAC   G +   + + +++++    
Sbjct: 393 SGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWV-HDLVRSTDF 451

Query: 467 ALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAH 526
             +I      + +  K G I +A ++   M  K      ++++S   +HG+ + A  + +
Sbjct: 452 ESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEV-TWNTMISGYGLHGQGQEALNIFY 510

Query: 527 QLIEAE-PENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGF 573
           +++ +        +  +   CS +G     +E++  M  +     YGF
Sbjct: 511 EMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHR-----YGF 553



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 77/175 (44%), Gaps = 13/175 (7%)

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
           R + +SH    H  I+  G   D+S+   L    S  G+I  +  IF  +   D   +  
Sbjct: 29  RSTSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNV 88

Query: 405 LISGYGFHGYGEEALQLFLEMQES-GVEPDAITVLAILSAC-----NHAGLVKEAETLFN 458
           L+ G+  +     +L +F  +++S  ++P++ T    +SA      + AG V   + + +
Sbjct: 89  LMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVD 148

Query: 459 NVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACR 513
               E  +   I      V +  K  ++EDA KV   MP K  T + ++++S  R
Sbjct: 149 GCDSELLLGSNI------VKMYFKFWRVEDARKVFDRMPEK-DTILWNTMISGYR 196


>gi|449442767|ref|XP_004139152.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Cucumis sativus]
          Length = 743

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 171/520 (32%), Positives = 302/520 (58%), Gaps = 2/520 (0%)

Query: 58  GSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMF 117
           G ++D  +SNS+++MY K  +   A +LF  +  RD +SWNS+++ +++ G     L++ 
Sbjct: 177 GFESDLALSNSMVNMYGKCGRIADARRLFQSIDCRDIVSWNSLLSAYSKIGATEEILQLL 236

Query: 118 REMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSK 177
           + M +       +     +S  +  G+L LG+ +H L++ DG   +   V +AL+ LY +
Sbjct: 237 QAMKIEDIKPDKQTFCSALSASAIKGDLRLGKLVHGLMLKDG-LNIDQHVESALVVLYLR 295

Query: 178 CHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIV 237
           C     A +VF+    ++ V WTAMISG + +   D  + +F  M    VKP+  TL   
Sbjct: 296 CRCLDPAYKVFKSTTEKDVVMWTAMISGLVQNDCADKALGVFYQMIESNVKPSTATLASG 355

Query: 238 LLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKD 297
           L ACA+L     G +IHGY    G   D     +L+ MY +C + L  +  IF +   KD
Sbjct: 356 LAACAQLGCCDIGASIHGYVLRQGIMLDIPAQNSLVTMYAKCNK-LQQSCSIFNKMVEKD 414

Query: 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHC 357
           +V W++I+ G++++G LS+ +  F+ MR   + P+S+T+ ++L +C     L  G  +H 
Sbjct: 415 LVSWNAIVAGHAKNGYLSKGIFFFNEMRKSFLRPDSITVTSLLQACGSAGALCQGKWIHN 474

Query: 358 YIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEE 417
           +++++ L   +    AL++MY KCG++ ++ + F+ M  RD V+W+TLI GYGF+G GE 
Sbjct: 475 FVLRSSLIPCIMTETALVDMYFKCGNLENAQKCFDCMLQRDLVAWSTLIVGYGFNGKGEI 534

Query: 418 ALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYV 477
           AL+ + E   +G+EP+ +  +++LSAC+H GL+ +  +++ ++ K+ +++  +EH AC V
Sbjct: 535 ALRKYSEFLGTGMEPNHVIFISVLSACSHGGLISKGLSIYESMTKDFRMSPNLEHRACVV 594

Query: 478 DLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAA 537
           DLL ++GK+++A      M  +PS  +L  L+ ACR++GR+E+ +++A  + E +P +  
Sbjct: 595 DLLSRAGKVDEAYSFYKMMFKEPSIVVLGMLLDACRVNGRVELGKVIARDMFELKPVDPG 654

Query: 538 NYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           N+  L+   +    W G E+ W  MR+ GL K  G+S IE
Sbjct: 655 NFVQLANSYASMSRWDGVEKAWTQMRSLGLKKYPGWSSIE 694



 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 163/523 (31%), Positives = 277/523 (52%), Gaps = 11/523 (2%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEM 89
            PS+ KAC       H GL LH + + +G   D  I +SLIS YAKF       ++FD M
Sbjct: 52  FPSLFKACTNLNLFSH-GLSLHQSVVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTM 110

Query: 90  PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGR 149
             R+ + W +II  +++ G    +  MF++M   G    +  L   +SL   I +L L  
Sbjct: 111 LKRNVVPWTTIIGSYSREGDIDIAFSMFKQMRESGIQPTSVTL---LSLLPGISKLPLLL 167

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
            +H L+I+ G FE  + +S +++++Y KC     A R+F+ +  R+ VSW +++S     
Sbjct: 168 CLHCLIILHG-FESDLALSNSMVNMYGKCGRIADARRLFQSIDCRDIVSWNSLLSAYSKI 226

Query: 210 QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS 269
              +  + L +AM+ E +KP + T    L A A   DLR GK +HG     G + D H+ 
Sbjct: 227 GATEEILQLLQAMKIEDIKPDKQTFCSALSASAIKGDLRLGKLVHGLMLKDGLNIDQHVE 286

Query: 270 AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
           +AL+ +Y  C   L PA  +F+ T  KDVV+W+++I G  Q+    +A+ +F +M    +
Sbjct: 287 SALVVLYLRC-RCLDPAYKVFKSTTEKDVVMWTAMISGLVQNDCADKALGVFYQMIESNV 345

Query: 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
           +P++ TL + L++C +      G  +H Y+++ G+  D+   N+L+ MY+KC  +  S  
Sbjct: 346 KPSTATLASGLAACAQLGCCDIGASIHGYVLRQGIMLDIPAQNSLVTMYAKCNKLQQSCS 405

Query: 390 IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL 449
           IFN+M  +D VSW  +++G+  +GY  + +  F EM++S + PD+ITV ++L AC  AG 
Sbjct: 406 IFNKMVEKDLVSWNAIVAGHAKNGYLSKGIFFFNEMRKSFLRPDSITVTSLLQACGSAGA 465

Query: 450 VKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLV 509
           + + + + N V++   I   +   A  VD+  K G +E+A K    M ++      S+L+
Sbjct: 466 LCQGKWIHNFVLRSSLIPCIMTETA-LVDMYFKCGNLENAQKCFDCM-LQRDLVAWSTLI 523

Query: 510 SACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLSMVCSESG 550
                +G+ E+A     + +    EP +    ++LS  CS  G
Sbjct: 524 VGYGFNGKGEIALRKYSEFLGTGMEPNHVIFISVLS-ACSHGG 565



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 174/354 (49%), Gaps = 9/354 (2%)

Query: 45  HFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCF 104
             G  +H   LK G + D  + ++L+ +Y +    + AY++F     +D + W ++I+  
Sbjct: 265 RLGKLVHGLMLKDGLNIDQHVESALVVLYLRCRCLDPAYKVFKSTTEKDVVMWTAMISGL 324

Query: 105 TQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELS 164
            QN    ++L +F +M           LA  ++ C+Q+G  ++G  IH  V+  G   L 
Sbjct: 325 VQNDCADKALGVFYQMIESNVKPSTATLASGLAACAQLGCCDIGASIHGYVLRQG-IMLD 383

Query: 165 VFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR 224
           +    +L+ +Y+KC+    +  +F +MV ++ VSW A+++G   +     GI  F  M++
Sbjct: 384 IPAQNSLVTMYAKCNKLQQSCSIFNKMVEKDLVSWNAIVAGHAKNGYLSKGIFFFNEMRK 443

Query: 225 EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
             ++P  +T+T +L AC     L  GK IH +              AL+ MY +C   L 
Sbjct: 444 SFLRPDSITVTSLLQACGSAGALCQGKWIHNFVLRSSLIPCIMTETALVDMYFKCGN-LE 502

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
            A+  F+    +D+V WS++I GY  +G    A++ +S      +EPN V  +++LS+C+
Sbjct: 503 NAQKCFDCMLQRDLVAWSTLIVGYGFNGKGEIALRKYSEFLGTGMEPNHVIFISVLSACS 562

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIG----NALMNMYSKCGSITSSHQIFNEM 394
               +S GL ++  + K   +F +S        ++++ S+ G +  ++  +  M
Sbjct: 563 HGGLISKGLSIYESMTK---DFRMSPNLEHRACVVDLLSRAGKVDEAYSFYKMM 613



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 129/243 (53%), Gaps = 4/243 (1%)

Query: 221 AMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECT 280
           +MQ+   +    T   +  AC  L    +G ++H      G   D ++ ++L+  Y +  
Sbjct: 39  SMQKTHTQLDAYTFPSLFKACTNLNLFSHGLSLHQSVVVNGLSHDSYIGSSLISFYAK-F 97

Query: 281 EALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAIL 340
             +H  R +F+    ++VV W++II  YS+ GD+  A  +F +MR   I+P SVTLL++L
Sbjct: 98  GCIHLGRKVFDTMLKRNVVPWTTIIGSYSREGDIDIAFSMFKQMRESGIQPTSVTLLSLL 157

Query: 341 SSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFV 400
              ++   L   L +HC I+  G   D+++ N+++NMY KCG I  + ++F  +  RD V
Sbjct: 158 PGISK---LPLLLCLHCLIILHGFESDLALSNSMVNMYGKCGRIADARRLFQSIDCRDIV 214

Query: 401 SWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNV 460
           SW +L+S Y   G  EE LQL   M+   ++PD  T  + LSA    G ++  + +   +
Sbjct: 215 SWNSLLSAYSKIGATEEILQLLQAMKIEDIKPDKQTFCSALSASAIKGDLRLGKLVHGLM 274

Query: 461 MKE 463
           +K+
Sbjct: 275 LKD 277



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 119/230 (51%), Gaps = 4/230 (1%)

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           ++S++   S  G   + ++ +  M+    + ++ T  ++  +CT  +  SHGL +H  ++
Sbjct: 17  FNSLVSRLSYQGAHHQVLQTYISMQKTHTQLDAYTFPSLFKACTNLNLFSHGLSLHQSVV 76

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
             GL+ D  IG++L++ Y+K G I    ++F+ M  R+ V WTT+I  Y   G  + A  
Sbjct: 77  VNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIGSYSREGDIDIAFS 136

Query: 421 LFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLL 480
           +F +M+ESG++P ++T+L++L   +   L+     L      E  +AL+       V++ 
Sbjct: 137 MFKQMRESGIQPTSVTLLSLLPGISKLPLLLCLHCLIILHGFESDLALS----NSMVNMY 192

Query: 481 GKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE 530
           GK G+I DA ++  ++  +      S L +  +I    E+ ++L    IE
Sbjct: 193 GKCGRIADARRLFQSIDCRDIVSWNSLLSAYSKIGATEEILQLLQAMKIE 242



 Score = 38.9 bits (89), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 71/147 (48%), Gaps = 7/147 (4%)

Query: 401 SWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNV 460
           S+ +L+S   + G   + LQ ++ MQ++  + DA T  ++  AC +  L     +L  +V
Sbjct: 16  SFNSLVSRLSYQGAHHQVLQTYISMQKTHTQLDAYTFPSLFKACTNLNLFSHGLSLHQSV 75

Query: 461 MKEKKIALAIEHY--ACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRL 518
           +      L+ + Y  +  +    K G I    KV  TM +K +    ++++ +    G +
Sbjct: 76  VVN---GLSHDSYIGSSLISFYAKFGCIHLGRKVFDTM-LKRNVVPWTTIIGSYSREGDI 131

Query: 519 EVAEMLAHQLIEAEPENAANYTLLSMV 545
           ++A  +  Q+ E+  +   + TLLS++
Sbjct: 132 DIAFSMFKQMRESGIQ-PTSVTLLSLL 157


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 195/574 (33%), Positives = 319/574 (55%), Gaps = 10/574 (1%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           ++++ L+LY + L   G+  +    P V++ C         G ++H   ++ G ++D  +
Sbjct: 175 YFDEALNLYHRMLW-VGIRPDVYTFPCVLRTCGGLPDLAR-GREVHLHVIRYGFESDVDV 232

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
            N+LI+MY K     SA  +FD MP RD ISWN++I+ + +N   +  L +F  M    F
Sbjct: 233 VNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMR--EF 290

Query: 126 VLKAELLA--GIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
            +  +L+    +IS C  +G+  LGR++H  VI  G F   V V+ +L+ ++S    W  
Sbjct: 291 FVDPDLMTMTSVISACEALGDERLGREVHGYVIKTG-FVAEVSVNNSLIQMHSSVGCWDE 349

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
           A  VF +M  ++ VSWTAMISG   +   +  ++ +  M+ EGV P  +T+  VL ACA 
Sbjct: 350 AEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAG 409

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
           L  L  G  +H +A   G      ++ +L+ MY +C   +  A  +F R   K+V+ W+S
Sbjct: 410 LGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKC-RCIDKALEVFHRIPNKNVISWTS 468

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           II G   +    EA+  F +M L  ++PNSVTL+++LS+C R   LS G  +H + ++ G
Sbjct: 469 IILGLRLNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTG 527

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
           L FD  + NAL++MY +CG +  +   FN    +D  SW  L++GY   G G  A++LF 
Sbjct: 528 LGFDGFLPNALLDMYVRCGRMEPAWNQFNS-CEKDVASWNILLTGYAQQGKGGLAVELFH 586

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS 483
           +M ES V PD IT  ++L AC+ +G+V +    F ++  +  IA  ++HYA  VDLLG++
Sbjct: 587 KMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRA 646

Query: 484 GKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLS 543
           G++EDA + +  MP+ P   I  +L++ACRI+  +E+ E+ A  + E + ++   Y LL 
Sbjct: 647 GRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLC 706

Query: 544 MVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            + ++SG W     V ++MR   L+   G S +E
Sbjct: 707 NLYADSGKWDEVARVRKIMRENRLTVDPGCSWVE 740



 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 141/522 (27%), Positives = 274/522 (52%), Gaps = 12/522 (2%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPY 91
           ++++ C + +     G ++H    K+ +     + N+L+SM+ +F     A+ +F +M  
Sbjct: 99  ALLRLCEWKRAASE-GSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAE 157

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQI 151
           RD  SWN ++  + + G++  +L ++  M   G          ++  C  + +L  GR++
Sbjct: 158 RDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREV 217

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQN 211
           H  VI  G FE  V V  AL+ +Y KC     A  VF++M  R+ +SW AMISG  ++  
Sbjct: 218 HLHVIRYG-FESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDV 276

Query: 212 YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAA 271
              G+ LF  M+   V P  +T+T V+ AC  L D R G+ +HGY    GF  +  ++ +
Sbjct: 277 CLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNS 336

Query: 272 LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP 331
           L+ M+         A ++F + + KD+V W+++I GY ++G   +A++ ++ M  E + P
Sbjct: 337 LIQMH-SSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVP 395

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIF 391
           + +T+ ++LS+C     L  G+ +H +  + GL   V + N+L++MYSKC  I  + ++F
Sbjct: 396 DEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVF 455

Query: 392 NEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVK 451
           + +  ++ +SWT++I G   +    EAL  F +M  S ++P+++T++++LSAC   G + 
Sbjct: 456 HRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIGALS 514

Query: 452 EAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLV 509
             + +  + +   +  L  + +     +D+  + G++E A    ++     ++   + L+
Sbjct: 515 CGKEIHAHAL---RTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSCEKDVAS--WNILL 569

Query: 510 SACRIHGRLEVAEMLAHQLIEAE-PENAANYTLLSMVCSESG 550
           +     G+  +A  L H++IE++   +   +T L   CS SG
Sbjct: 570 TGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSG 611



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 122/448 (27%), Positives = 222/448 (49%), Gaps = 8/448 (1%)

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
           ++ E    ++ LC        G ++H+ V    +  L V +  ALL ++ +    + A  
Sbjct: 92  VEEETYIALLRLCEWKRAASEGSRVHSYVSKTVT-RLGVRLGNALLSMFVRFGDLVEAWY 150

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VF +M  R+  SW  ++ G   +  +D  ++L+  M   G++P   T   VL  C  L D
Sbjct: 151 VFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPD 210

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L  G+ +H +    GF+ D  +  AL+ MY +C + +  AR++F+R   +D + W+++I 
Sbjct: 211 LARGREVHLHVIRYGFESDVDVVNALITMYVKCGD-IFSARLVFDRMPRRDRISWNAMIS 269

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           GY ++    E ++LF  MR   ++P+ +T+ +++S+C        G  VH Y++K G   
Sbjct: 270 GYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVA 329

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           +VS+ N+L+ M+S  G    +  +F++M  +D VSWT +ISGY  +G  E+A++ +  M+
Sbjct: 330 EVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIME 389

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
             GV PD IT+ ++LSAC   GL+ +   L     +    +  I   +  +D+  K   I
Sbjct: 390 HEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANS-LIDMYSKCRCI 448

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546
           + A +V   +P K +    +S++   R++ R   A     Q+I +   N+     +   C
Sbjct: 449 DKALEVFHRIPNK-NVISWTSIILGLRLNYRSFEALFFFQQMILSLKPNSVTLVSVLSAC 507

Query: 547 SESGNWLGAEEVWRVMRAKGLSKSYGFS 574
           +     +GA    + + A  L    GF 
Sbjct: 508 AR----IGALSCGKEIHAHALRTGLGFD 531



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 122/247 (49%), Gaps = 1/247 (0%)

Query: 221 AMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECT 280
           +MQ   V     T   +L  C   R    G  +H Y           L  AL+ M+    
Sbjct: 84  SMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFG 143

Query: 281 EALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAIL 340
           + L  A  +F +   +D+  W+ ++ GY+++G   EA+ L+ RM    I P+  T   +L
Sbjct: 144 D-LVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVL 202

Query: 341 SSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFV 400
            +C     L+ G  VH ++++ G   DV + NAL+ MY KCG I S+  +F+ M  RD +
Sbjct: 203 RTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRI 262

Query: 401 SWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNV 460
           SW  +ISGY  +    E L+LF  M+E  V+PD +T+ +++SAC   G  +    +   V
Sbjct: 263 SWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYV 322

Query: 461 MKEKKIA 467
           +K   +A
Sbjct: 323 IKTGFVA 329


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 184/563 (32%), Positives = 302/563 (53%), Gaps = 3/563 (0%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
            LH  G   N  +  +V+K     +  +  G  +H   LK G  ++  I  +LI  Y+  
Sbjct: 36  RLHGEGHELNPFVFTTVLKLLVSMEWAE-LGRIVHGCVLKVGYGSNTFIGTALIDAYSVS 94

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
                A ++FDE+  +D +SW  +I  + +N  +  +LE F +M + GF       AG++
Sbjct: 95  GCVSMAREVFDEISSKDMVSWTGMIASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVL 154

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
             C  +   + G+ +H  V+   ++E  ++V   LL+LY++C     A R F  M   + 
Sbjct: 155 KACLGLQNFDAGKTVHCSVL-KTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDV 213

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           + W+ MIS    S   +  +++F  M+R  V P + T + VL A A++  L   K IHG+
Sbjct: 214 IPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESLDLSKTIHGH 273

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
           A   G   D  +S ALM  Y +C   +  +  +FE    ++ V W++II  Y Q GD   
Sbjct: 274 ALKAGLSTDVFVSNALMACYAKCG-CIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGER 332

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
           A+ LFS M   +++   VT  +IL +C   + L  GL VHC   K     DV++GNAL++
Sbjct: 333 ALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVGNALID 392

Query: 377 MYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAIT 436
           MY+KCGSI  +  +F+ +  RD VSW  +I GY  HG G EA+++F  M+E+  +PD +T
Sbjct: 393 MYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELT 452

Query: 437 VLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
            + +LSAC++ G + E +  F ++ ++  I   +EHY C V L+G+SG ++ A K +  +
Sbjct: 453 FVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLDQAVKFIEDI 512

Query: 497 PMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAE 556
           P +PS  I  +L+ AC IH  +E+  + A +++E EP + A++ LLS + + +  W    
Sbjct: 513 PFEPSVMIWRALLGACVIHNDVELGRISAQRVLELEPRDEASHVLLSNIYARARRWGNVA 572

Query: 557 EVWRVMRAKGLSKSYGFSRIENE 579
            V + M+ KG+ K  G S IEN+
Sbjct: 573 YVRKHMKRKGVKKEPGLSWIENQ 595



 Score =  198 bits (503), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 122/408 (29%), Positives = 209/408 (51%), Gaps = 9/408 (2%)

Query: 85  LFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGE 144
           +FDEMP R+T+S+ ++I+ + Q+  ++ + E+F  ++  G  L   +   ++ L   +  
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEW 61

Query: 145 LELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMIS 204
            ELGR +H  V+  G +  + F+ TAL+D YS      +A  VF+++  ++ VSWT MI+
Sbjct: 62  AELGRIVHGCVLKVG-YGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIA 120

Query: 205 GCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDF 264
              ++  +   ++ F  M+  G KP   T   VL AC  L++   GK +H       ++ 
Sbjct: 121 SYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYER 180

Query: 265 DHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM 324
           D ++   L+ +Y  C +     R   +  K  DV+ WS +I  ++QSG   +A+++F +M
Sbjct: 181 DLYVGVGLLELYTRCGDNDDAWRAFGDMPK-NDVIPWSFMISRFAQSGQSEKALEIFCQM 239

Query: 325 RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSI 384
           R   + PN  T  ++L +      L     +H + +KAGL+ DV + NALM  Y+KCG I
Sbjct: 240 RRAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCI 299

Query: 385 TSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
             S ++F  ++ R+ VSW T+I  Y   G GE AL LF  M    V+   +T  +IL AC
Sbjct: 300 EQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRAC 359

Query: 445 NHAGLVK---EAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
                ++   +   L    +  + +A+        +D+  K G I+DA
Sbjct: 360 ATLAALELGLQVHCLTAKTIYGQDVAVG----NALIDMYAKCGSIKDA 403



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 120/239 (50%), Gaps = 10/239 (4%)

Query: 288 IIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQS 347
           ++F+    ++ V + ++I GY+QS    EA +LF+R+  E  E N      +L       
Sbjct: 1   MVFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSME 60

Query: 348 FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLIS 407
           +   G  VH  ++K G   +  IG AL++ YS  G ++ + ++F+E++++D VSWT +I+
Sbjct: 61  WAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIA 120

Query: 408 GYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK---EK 464
            Y  +    EAL+ F +M+ +G +P+  T   +L AC         +T+  +V+K   E+
Sbjct: 121 SYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYER 180

Query: 465 KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK---PSTRILSSLVSACRIHGRLEV 520
            + + +      ++L  + G  +DA +    MP     P + ++S    + +    LE+
Sbjct: 181 DLYVGVG----LLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEI 235


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 185/561 (32%), Positives = 301/561 (53%), Gaps = 41/561 (7%)

Query: 57  SGSDADPVISNSLISMYAKFSKPESAYQLFDEMP-----YRDTISWNSIINCFTQNGFYV 111
           SG   D V  N++IS YA+  + E A + F EM        + +SW ++I    QNG+  
Sbjct: 285 SGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDF 344

Query: 112 RSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTAL 171
            +L +FR+M L G    +  +A  +S C+ +  L  GR+IH   I     +  + V  +L
Sbjct: 345 EALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSL 404

Query: 172 LDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDL------------- 218
           +D Y+KC    +A R F  +   + VSW AM++G     +++  I+L             
Sbjct: 405 VDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDI 464

Query: 219 ----------------------FRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
                                 F+ M   G+ P   T++  L AC ++R+L+ GK IHGY
Sbjct: 465 ITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGY 524

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
                 +    + +AL+ MY  C ++L  A  +F     +DVV+W+SII   +QSG    
Sbjct: 525 VLRNHIELSTGVGSALISMYSGC-DSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVN 583

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
           A+ L   M L  +E N+VT+++ L +C++ + L  G  +H +I++ GL+    I N+L++
Sbjct: 584 ALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLID 643

Query: 377 MYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAIT 436
           MY +CGSI  S +IF+ M  RD VSW  +IS YG HG+G +A+ LF + +  G++P+ IT
Sbjct: 644 MYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHIT 703

Query: 437 VLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
              +LSAC+H+GL++E    F  +  E  +  A+E YAC VDLL ++G+  +  + +  M
Sbjct: 704 FTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKM 763

Query: 497 PMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAE 556
           P +P+  +  SL+ ACRIH   ++AE  A  L E EP+++ NY L++ + S +G W  A 
Sbjct: 764 PFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAA 823

Query: 557 EVWRVMRAKGLSKSYGFSRIE 577
           ++  +M+ +G++K  G S IE
Sbjct: 824 KIRCLMKERGVTKPPGCSWIE 844



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 147/597 (24%), Positives = 270/597 (45%), Gaps = 82/597 (13%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           YE+T+ L+   ++  G+  +  + P V KAC+  + ++  G  ++   L  G + +  + 
Sbjct: 171 YEETIKLFYLMVN-EGVRPDHFVFPKVFKACSELKNYR-VGKDVYDYMLSIGFEGNSCVK 228

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
            S++ M+ K  + + A + F+E+ ++D   WN +++ +T  G + ++L+   +M L G  
Sbjct: 229 GSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVK 288

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
                   IIS  +Q G+ E                             SK    +  L+
Sbjct: 289 PDQVTWNAIISGYAQSGQFEEA---------------------------SKYFLEMGGLK 321

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYD-TGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
            F+     N VSWTA+I+G  +   YD   + +FR M  EGVKP  +T+   + AC  L 
Sbjct: 322 DFKP----NVVSWTALIAGS-EQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLS 376

Query: 246 DLRNGKAIHGYAYCC-GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
            LR+G+ IHGY       D D  +  +L+  Y +C  ++  AR  F   K  D+V W+++
Sbjct: 377 LLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKC-RSVEVARRKFGMIKQTDLVSWNAM 435

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIE---------------------------------- 330
           + GY+  G   EA++L S M+ + IE                                  
Sbjct: 436 LAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGM 495

Query: 331 -PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
            PN+ T+   L++C +   L  G  +H Y+++  +     +G+AL++MYS C S+  +  
Sbjct: 496 DPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACS 555

Query: 390 IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL 449
           +F+E++ RD V W ++IS     G    AL L  EM  S VE + +T+++ L AC+    
Sbjct: 556 VFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAA 615

Query: 450 VKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSS 507
           +++ + +   ++   +  L   ++     +D+ G+ G I+ + ++   MP +      + 
Sbjct: 616 LRQGKEIHQFII---RCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVS-WNV 671

Query: 508 LVSACRIHG-RLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMR 563
           ++S   +HG  ++   +           N   +T L   CS SG     EE W+  +
Sbjct: 672 MISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGL---IEEGWKYFK 725



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 125/460 (27%), Positives = 216/460 (46%), Gaps = 56/460 (12%)

Query: 18  LHPSGLYSNTAILPSVIKACA-------YAQTHQ--------HFGLQLHCTALKSGSDAD 62
           +H +G+ +N A+L S +           YA   Q          G Q+H   + +G D  
Sbjct: 64  VHRNGVLNNAAMLLSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVC 123

Query: 63  PVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL 122
             + + L+ +Y +    E A ++FD+M  R+  SW +I+  +   G Y  ++++F  M  
Sbjct: 124 EFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVN 183

Query: 123 CGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL 182
            G      +   +   CS++    +G+ ++  ++  G FE +  V  ++LD++ KC    
Sbjct: 184 EGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIG-FEGNSCVKGSILDMFIKCGRMD 242

Query: 183 IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
           IA R FE++  ++   W  M+SG      +   +     M+  GVKP +VT   +     
Sbjct: 243 IARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAI----- 297

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKD----V 298
                     I GYA    F+                      ++   E   +KD    V
Sbjct: 298 ----------ISGYAQSGQFE--------------------EASKYFLEMGGLKDFKPNV 327

Query: 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCY 358
           V W+++I G  Q+G   EA+ +F +M LE ++PNS+T+ + +S+CT  S L HG  +H Y
Sbjct: 328 VSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGY 387

Query: 359 IMKA-GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEE 417
            +K   L+ D+ +GN+L++ Y+KC S+  + + F  +   D VSW  +++GY   G  EE
Sbjct: 388 CIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEE 447

Query: 418 ALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLF 457
           A++L  EM+  G+EPD IT   +++     G  K A   F
Sbjct: 448 AIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFF 487



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 120/449 (26%), Positives = 217/449 (48%), Gaps = 48/449 (10%)

Query: 130 ELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
           E+ A I+  C ++  L LG Q+HA ++V+G  ++  F+ + LL++Y +      A R+F+
Sbjct: 90  EIYASILQKCRKLYNLRLGFQVHAQLVVNG-VDVCEFLGSRLLEVYCQTGCVEDARRMFD 148

Query: 190 QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
           +M  RN  SWTA++       +Y+  I LF  M  EGV+P       V  AC+EL++ R 
Sbjct: 149 KMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRV 208

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
           GK ++ Y    GF+ +  +  +++ M+ +C   +  AR  FE  + KDV +W+ ++ GY+
Sbjct: 209 GKDVYDYMLSIGFEGNSCVKGSILDMFIKCGR-MDIARRFFEEIEFKDVFMWNIMVSGYT 267

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
             G+  +A+K  S M+L  ++P+ VT  AI+S                            
Sbjct: 268 SKGEFKKALKCISDMKLSGVKPDQVTWNAIISG--------------------------- 300

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAA-RDF----VSWTTLISGYGFHGYGEEALQLFLE 424
                   Y++ G    + + F EM   +DF    VSWT LI+G   +GY  EAL +F +
Sbjct: 301 --------YAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRK 352

Query: 425 MQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSG 484
           M   GV+P++IT+ + +SAC +  L++    +    +K +++   +      VD   K  
Sbjct: 353 MVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCR 412

Query: 485 KIEDACKVVSTMPMKPSTRILS--SLVSACRIHGRLEVA-EMLAHQLIEAEPENAANYTL 541
            +E A +      M   T ++S  ++++   + G  E A E+L+    +    +   +  
Sbjct: 413 SVEVARR---KFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNG 469

Query: 542 LSMVCSESGNWLGAEEVWRVMRAKGLSKS 570
           L    ++ G+   A E ++ M + G+  +
Sbjct: 470 LVTGFTQYGDGKAALEFFQRMHSMGMDPN 498



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 115/479 (24%), Positives = 199/479 (41%), Gaps = 80/479 (16%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           Q +H  G+  NT  +   + AC   +  +  G ++H   L++  +    + ++LISMY+ 
Sbjct: 488 QRMHSMGMDPNTTTISGALAACGQVRNLK-LGKEIHGYVLRNHIELSTGVGSALISMYSG 546

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
               E A  +F E+  RD + WNSII+   Q+G  V +L++ REM L    +    +   
Sbjct: 547 CDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSA 606

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           +  CS++  L  G++IH  +I  G  +   F+  +L+D+Y +C     + R+F+ M  R+
Sbjct: 607 LPACSKLAALRQGKEIHQFIIRCG-LDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRD 665

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
            VSW  MIS           ++LF+  +  G+KP  +T T +L AC+      +G    G
Sbjct: 666 LVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSH-----SGLIEEG 720

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
           + Y      ++ +  A+    C                          ++   S++G  +
Sbjct: 721 WKYFKMMKTEYAMDPAVEQYAC--------------------------MVDLLSRAGQFN 754

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHC------YIMKAGLNFDV- 368
           E ++   +M     EPN+    ++L +C           +HC      Y  +     +  
Sbjct: 755 ETLEFIEKMPF---EPNAAVWGSLLGACR----------IHCNPDLAEYAARYLFELEPQ 801

Query: 369 SIGNALM--NMYSKCGSITSSHQIFNEMAARDFV-----SWT-------TLISGYGFHGY 414
           S GN ++  N+YS  G    + +I   M  R        SW        + + G   H  
Sbjct: 802 SSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPL 861

Query: 415 GEEAL----QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA 469
            E+       L+ +++E G  PD   VL           V E E  F+     +KIALA
Sbjct: 862 MEQISAKMESLYFDIKEIGYVPDTNFVLQD---------VDEDEKEFSLCGHSEKIALA 911



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 91/194 (46%), Gaps = 9/194 (4%)

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
           ++G L+ A  L S M L   +       +IL  C +   L  G  VH  ++  G++    
Sbjct: 66  RNGVLNNAAMLLSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEF 125

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
           +G+ L+ +Y + G +  + ++F++M+ R+  SWT ++  Y   G  EE ++LF  M   G
Sbjct: 126 LGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEG 185

Query: 430 VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACY----VDLLGKSGK 485
           V PD      +  AC+     +  + +++ ++     ++  E  +C     +D+  K G+
Sbjct: 186 VRPDHFVFPKVFKACSELKNYRVGKDVYDYML-----SIGFEGNSCVKGSILDMFIKCGR 240

Query: 486 IEDACKVVSTMPMK 499
           ++ A +    +  K
Sbjct: 241 MDIARRFFEEIEFK 254


>gi|225433310|ref|XP_002282466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Vitis vinifera]
          Length = 625

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 186/561 (33%), Positives = 319/561 (56%), Gaps = 22/561 (3%)

Query: 32  SVIKACAYAQTHQHFGL--QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEM 89
           +++++  ++ TH+   L  Q H   L  G   + +++  LI  YA    P  +  +FD +
Sbjct: 25  ALLQSLHFSVTHKSLKLTRQSHSRILSLGLSQNSLLATKLIFAYAICQHPYHSRLVFDSL 84

Query: 90  PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGR 149
            +++   WNS+IN + +N  Y  + ++F +M     +     L+ +  + S++G L  G+
Sbjct: 85  QHKNVFLWNSLINGYAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGK 144

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
            IH   I  G F     V+ +++ +Y KC ++  + +VF++M IRN  SW  +I+G   S
Sbjct: 145 SIHGKSIRIG-FVSDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYAVS 203

Query: 210 QN---YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC------ 260
            N    +   +  + MQ + V+P   T++ +L  C    D   GK  +G    C      
Sbjct: 204 GNCNFREETWEFVKQMQMDEVRPDAYTISSLLPLC----DGDKGKWDYGRELHCYIVKNE 259

Query: 261 ---GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
              G D D HL   L+ MY    + +   R +F+R K ++V  W+++I GY ++GD  EA
Sbjct: 260 LVLGLDSDVHLGCCLIDMYSRSNKVV-VGRRVFDRMKCRNVFSWTAMINGYVENGDSDEA 318

Query: 318 MKLFSRMR-LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
           + LF  M+ ++ IEPN V+L+++L +C+  S L  G  +H + ++  LN +VS+ NAL++
Sbjct: 319 LSLFRDMQVIDGIEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALID 378

Query: 377 MYSKCGSITSSHQIF-NEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           MYSKCGS+ S+ ++F ++   +D +SW+++ISGYG HG G+EA+ L+ +M ++G+ PD I
Sbjct: 379 MYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMI 438

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           T + ILSAC+ +GLV E   ++++V+ +  I   +E +AC VD+LG++G+++ A   +  
Sbjct: 439 TTVGILSACSRSGLVNEGLNIYSSVINDYGIEPTLEIFACIVDMLGRAGQLDPALDFIKA 498

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGA 555
           MP++P   +  +LVS   IHG LE+ E+    LI+ EPEN +NY  +S + + S  W   
Sbjct: 499 MPVEPGPSVWGALVSCSIIHGDLEMQELAYRFLIQLEPENPSNYVSISNLYASSRRWDAV 558

Query: 556 EEVWRVMRAKGLSKSYGFSRI 576
            EV R+M+ K L K  G S I
Sbjct: 559 AEVRRMMKDKRLRKVPGCSWI 579


>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
           [Vitis vinifera]
 gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
          Length = 703

 Score =  328 bits (840), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 178/531 (33%), Positives = 294/531 (55%), Gaps = 2/531 (0%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G   H  A+K  S  D  + +SL++MY K      A ++FD MP R+++SW ++I+ +  
Sbjct: 127 GRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYAS 186

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
                 +L +FR M          +   ++S  +    +  G+QIH + + +G   + V 
Sbjct: 187 QKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSI-VS 245

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           V  AL+ +Y+KC     AL+ FE    +N ++W+AMI+G   S + D  + LF +M   G
Sbjct: 246 VGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSG 305

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           ++P+  T   V+ AC++L     GK +H Y    GF+   ++  AL+ MY +C+ ++  A
Sbjct: 306 IRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCS-SIVDA 364

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
           R  F+  +  D+V+W+S+I GY Q+G+  +A+ L+ RM +E I PN +T+ ++L +C+  
Sbjct: 365 RKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSL 424

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
           + L  G  +H   +K G   +V IG+AL  MY+KCG +     +F  M ARD +SW  +I
Sbjct: 425 AALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMI 484

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
           SG   +G G+EAL+LF EMQ  G +PD +T + ILSAC+H GLV+     F  +  E  +
Sbjct: 485 SGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFRMMFDEFGM 544

Query: 467 ALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAH 526
              +EHYAC VD+L ++GK+++A +   +  +     +   ++ ACR +   E+      
Sbjct: 545 DPRVEHYACMVDILSRAGKLKEAIEFTESATIDHGMCLWRIILGACRNYRNYELGAYAGE 604

Query: 527 QLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +L+E   + ++ Y LLS + S  G W   E V R+M+ +G+SK  G S IE
Sbjct: 605 KLMELGSQESSAYVLLSSIYSALGRWEDVERVRRMMKLRGVSKEPGCSWIE 655



 Score =  228 bits (582), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 154/507 (30%), Positives = 252/507 (49%), Gaps = 8/507 (1%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G  LH   +KS S     I+NSL+++YAK  +   A  +F+ +  +D +SWN IIN ++Q
Sbjct: 25  GKALHAQIIKSSSSC-VYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIINGYSQ 83

Query: 107 NGFYVRS--LEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELS 164
           +G    S  +E+F+ M        A   AG+ +  S + +   GR  HA+ I   S    
Sbjct: 84  HGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDSCR-D 142

Query: 165 VFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR 224
           VFV ++L+++Y K      A +VF+ M  RN VSW  MISG    +     + LFR M+R
Sbjct: 143 VFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRR 202

Query: 225 EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
           E         T VL A      + NGK IH  A   G      +  AL+ MY +C  +L 
Sbjct: 203 EEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCG-SLD 261

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
            A   FE +  K+ + WS++I GY+QSGD  +A+KLFS M L  I P+  T + ++++C+
Sbjct: 262 DALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACS 321

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
                  G  VH Y++K G    + +  AL++MY+KC SI  + + F+ +   D V WT+
Sbjct: 322 DLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTS 381

Query: 405 LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK 464
           +I GY  +G  E+AL L+  M+  G+ P+ +T+ ++L AC+    +++ + +    +K  
Sbjct: 382 MIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVK-Y 440

Query: 465 KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG-RLEVAEM 523
              L +   +    +  K G ++D   V   MP +      ++++S    +G   E  E+
Sbjct: 441 GFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVIS-WNAMISGLSQNGCGKEALEL 499

Query: 524 LAHQLIEAEPENAANYTLLSMVCSESG 550
                +E    +   +  +   CS  G
Sbjct: 500 FEEMQLEGTKPDYVTFVNILSACSHMG 526



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 86/280 (30%), Positives = 135/280 (48%), Gaps = 15/280 (5%)

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGY-----AYCCGFDFDHHLSAALMHMYCECTEAL 283
           P+  +    LL     R L+ GKA+H       + C       +++ +L+++Y +C + L
Sbjct: 4   PSNRSFFTALLQYTHNRSLQKGKALHAQIIKSSSSCV------YIANSLVNLYAKC-QRL 56

Query: 284 HPARIIFERTKVKDVVIWSSIIRGYSQSGDL--SEAMKLFSRMRLERIEPNSVTLLAILS 341
             A+ +FER + KDVV W+ II GYSQ G    S  M+LF RMR E   PN+ T   + +
Sbjct: 57  REAKFVFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFT 116

Query: 342 SCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS 401
           + +     + G   H   +K     DV +G++LMNMY K G    + ++F+ M  R+ VS
Sbjct: 117 AASTLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVS 176

Query: 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVM 461
           W T+ISGY       EAL LF  M+      +     ++LSA     LV   + +    +
Sbjct: 177 WATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAV 236

Query: 462 KEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPS 501
           K   +++     A  V +  K G ++DA +   T   K S
Sbjct: 237 KNGLLSIVSVGNA-LVTMYAKCGSLDDALQTFETSSDKNS 275


>gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530
 gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana]
 gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana]
 gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 834

 Score =  328 bits (840), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 190/572 (33%), Positives = 321/572 (56%), Gaps = 12/572 (2%)

Query: 10  TLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSL 69
           +L L+ Q L    +  +  IL +V+ AC+     +  G Q+H   L+ G + D  + N L
Sbjct: 233 SLQLFYQ-LMEDNVVPDGYILSTVLSACSILPFLEG-GKQIHAHILRYGLEMDASLMNVL 290

Query: 70  ISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKA 129
           I  Y K  +  +A++LF+ MP ++ ISW ++++ + QN  +  ++E+F  M    F LK 
Sbjct: 291 IDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSM--SKFGLKP 348

Query: 130 ELLA--GIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
           ++ A   I++ C+ +  L  G Q+HA  I   +     +V+ +L+D+Y+KC     A +V
Sbjct: 349 DMYACSSILTSCASLHALGFGTQVHAYTI-KANLGNDSYVTNSLIDMYAKCDCLTDARKV 407

Query: 188 FEQMVIRNEVSWTAMISGC--IDSQ-NYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
           F+     + V + AMI G   + +Q      +++FR M+   ++P+ +T   +L A A L
Sbjct: 408 FDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASL 467

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
             L   K IHG  +  G + D    +AL+ +Y  C   L  +R++F+  KVKD+VIW+S+
Sbjct: 468 TSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCY-CLKDSRLVFDEMKVKDLVIWNSM 526

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
             GY Q  +  EA+ LF  ++L R  P+  T   ++++    + +  G   HC ++K GL
Sbjct: 527 FAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGL 586

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
             +  I NAL++MY+KCGS   +H+ F+  A+RD V W ++IS Y  HG G++ALQ+  +
Sbjct: 587 ECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEK 646

Query: 425 MQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSG 484
           M   G+EP+ IT + +LSAC+HAGLV++    F  +M    I    EHY C V LLG++G
Sbjct: 647 MMSEGIEPNYITFVGVLSACSHAGLVEDGLKQF-ELMLRFGIEPETEHYVCMVSLLGRAG 705

Query: 485 KIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSM 544
           ++  A +++  MP KP+  +  SL+S C   G +E+AE  A   I ++P+++ ++T+LS 
Sbjct: 706 RLNKARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSN 765

Query: 545 VCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
           + +  G W  A++V   M+ +G+ K  G S I
Sbjct: 766 IYASKGMWTEAKKVRERMKVEGVVKEPGRSWI 797



 Score =  238 bits (607), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 160/551 (29%), Positives = 276/551 (50%), Gaps = 13/551 (2%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGL-QLHCTALKSGSDADPVI 65
           YE++L ++ +         N  IL S I+AC+       + + QL    +KSG D D  +
Sbjct: 126 YEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYV 185

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
              LI  Y K    + A  +FD +P + T++W ++I+   + G    SL++F ++     
Sbjct: 186 GTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNV 245

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
           V    +L+ ++S CS +  LE G+QIHA ++  G  E+   +   L+D Y KC   + A 
Sbjct: 246 VPDGYILSTVLSACSILPFLEGGKQIHAHILRYG-LEMDASLMNVLIDSYVKCGRVIAAH 304

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
           ++F  M  +N +SWT ++SG   +  +   ++LF +M + G+KP     + +L +CA L 
Sbjct: 305 KLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLH 364

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
            L  G  +H Y        D +++ +L+ MY +C + L  AR +F+     DVV+++++I
Sbjct: 365 ALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKC-DCLTDARKVFDIFAAADVVLFNAMI 423

Query: 306 RGYSQSG---DLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
            GYS+ G   +L EA+ +F  MR   I P+ +T +++L +    + L     +H  + K 
Sbjct: 424 EGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKY 483

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
           GLN D+  G+AL+++YS C  +  S  +F+EM  +D V W ++ +GY      EEAL LF
Sbjct: 484 GLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLF 543

Query: 423 LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDLL 480
           LE+Q S   PD  T   +++A  +   V+  +     ++K     L    Y     +D+ 
Sbjct: 544 LELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKR---GLECNPYITNALLDMY 600

Query: 481 GKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA-EMLAHQLIEAEPENAANY 539
            K G  EDA K   +   +      +S++S+   HG  + A +ML   + E    N   +
Sbjct: 601 AKCGSPEDAHKAFDSAASRDVV-CWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITF 659

Query: 540 TLLSMVCSESG 550
             +   CS +G
Sbjct: 660 VGVLSACSHAG 670



 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 124/407 (30%), Positives = 210/407 (51%), Gaps = 12/407 (2%)

Query: 45  HFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCF 104
           H+   +H   +  G + D  +SN LI++Y++      A ++F++MP R+ +SW+++++  
Sbjct: 61  HYQNVVHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSAC 120

Query: 105 TQNGFYVRSLEMFREMYLCGFVLKAE-LLAGIISLCSQIGELELGR----QIHALVIVDG 159
             +G Y  SL +F E +        E +L+  I  CS  G    GR    Q+ + ++  G
Sbjct: 121 NHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACS--GLDGRGRWMVFQLQSFLVKSG 178

Query: 160 SFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLF 219
            F+  V+V T L+D Y K  +   A  VF+ +  ++ V+WT MISGC+        + LF
Sbjct: 179 -FDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLF 237

Query: 220 RAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCEC 279
             +  + V P    L+ VL AC+ L  L  GK IH +    G + D  L   L+  Y +C
Sbjct: 238 YQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKC 297

Query: 280 TEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAI 339
              +  A  +F     K+++ W++++ GY Q+    EAM+LF+ M    ++P+     +I
Sbjct: 298 GRVI-AAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSI 356

Query: 340 LSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDF 399
           L+SC     L  G  VH Y +KA L  D  + N+L++MY+KC  +T + ++F+  AA D 
Sbjct: 357 LTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADV 416

Query: 400 VSWTTLISGYGFHGYG---EEALQLFLEMQESGVEPDAITVLAILSA 443
           V +  +I GY   G      EAL +F +M+   + P  +T +++L A
Sbjct: 417 VLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRA 463



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 105/354 (29%), Positives = 185/354 (52%), Gaps = 24/354 (6%)

Query: 151 IHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQ 210
           +H  +IV G  EL  ++S  L++LYS+    + A +VFE+M  RN VSW+ M+S C    
Sbjct: 66  VHGQIIVWG-LELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHG 124

Query: 211 NYDTGIDLFRAMQR-EGVKPTRVTLTIVLLACAELRDLRNGKA------IHGYAYCCGFD 263
            Y+  + +F    R     P    L+  + AC+ L    +G+       +  +    GFD
Sbjct: 125 IYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGL----DGRGRWMVFQLQSFLVKSGFD 180

Query: 264 FDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSR 323
            D ++   L+  Y +    +  AR++F+    K  V W+++I G  + G    +++LF +
Sbjct: 181 RDVYVGTLLIDFYLK-DGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQ 239

Query: 324 MRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS 383
           +  + + P+   L  +LS+C+   FL  G  +H +I++ GL  D S+ N L++ Y KCG 
Sbjct: 240 LMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGR 299

Query: 384 ITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
           + ++H++FN M  ++ +SWTTL+SGY  +   +EA++LF  M + G++PD     +IL++
Sbjct: 300 VIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTS 359

Query: 444 CN--HA---GLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKV 492
           C   HA   G    A T+  N+  +  +  ++      +D+  K   + DA KV
Sbjct: 360 CASLHALGFGTQVHAYTIKANLGNDSYVTNSL------IDMYAKCDCLTDARKV 407


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  328 bits (840), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 184/548 (33%), Positives = 305/548 (55%), Gaps = 34/548 (6%)

Query: 48  LQLHCTALKSGS-DADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           LQLH      G+   +  ++  L + YA       A  +FD++  +++  WNS+I  +  
Sbjct: 42  LQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHIFDQIVLKNSFLWNSMIRGYAC 101

Query: 107 NGFYVRSLEMFREMYLCG---------FVLKAELLAGIISLCSQIGELELGRQIHALVIV 157
           N    R+L ++ +M   G         FVLKA         C  +   E+GR++HALV+V
Sbjct: 102 NNSPSRALFLYLKMLHFGQKPDNFTYPFVLKA---------CGDLLLREMGRKVHALVVV 152

Query: 158 DGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGID 217
            G  E  V+V  ++L +Y K      A  VF++M++R+  SW  M+SG + +       +
Sbjct: 153 -GGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNGEARGAFE 211

Query: 218 LFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY--------CCGFDFDHHLS 269
           +F  M+R+G    R TL  +L AC ++ DL+ GK IHGY          C GF     L 
Sbjct: 212 VFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCNGF-----LM 266

Query: 270 AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
            +++ MYC C E++  AR +FE  +VKDVV W+S+I GY + GD  +A++LF RM +   
Sbjct: 267 NSIIDMYCNC-ESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVGA 325

Query: 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
            P+ VT++++L++C + S L  G  V  Y++K G   +V +G AL+ MY+ CGS+  + +
Sbjct: 326 VPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCACR 385

Query: 390 IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL 449
           +F+EM  ++  + T +++G+G HG G EA+ +F EM   GV PD     A+LSAC+H+GL
Sbjct: 386 VFDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHSGL 445

Query: 450 VKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLV 509
           V E + +F  + ++  +     HY+C VDLLG++G +++A  V+  M +KP+  + ++L+
Sbjct: 446 VDEGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTALL 505

Query: 510 SACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSK 569
           SACR+H  +++A + A +L E  P+  + Y  LS + +    W   E V  ++  + L K
Sbjct: 506 SACRLHRNVKLAVISAQKLFELNPDGVSGYVCLSNIYAAERRWEDVENVRALVAKRRLRK 565

Query: 570 SYGFSRIE 577
              +S +E
Sbjct: 566 PPSYSFVE 573



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 114/430 (26%), Positives = 206/430 (47%), Gaps = 12/430 (2%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           + L LY + LH  G   +    P V+KAC      +  G ++H   +  G + D  + NS
Sbjct: 107 RALFLYLKMLH-FGQKPDNFTYPFVLKACGDLLLRE-MGRKVHALVVVGGLEEDVYVGNS 164

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           ++SMY KF   E+A  +FD M  RD  SWN++++ F +NG    + E+F +M   GFV  
Sbjct: 165 ILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGD 224

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFE--LSVFVSTALLDLYSKCHHWLIALR 186
              L  ++S C  + +L++G++IH  V+ +G      + F+  +++D+Y  C     A +
Sbjct: 225 RTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARK 284

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           +FE + +++ VSW ++ISG     +    ++LF  M   G  P  VT+  VL AC ++  
Sbjct: 285 LFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISA 344

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           LR G  +  Y    G+  +  +  AL+ MY  C   +   R +F+    K++   + ++ 
Sbjct: 345 LRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCACR-VFDEMPEKNLPACTVMVT 403

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           G+   G   EA+ +F  M  + + P+     A+LS+C+    +  G  +  Y M    + 
Sbjct: 404 GFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHSGLVDEGKEIF-YKMTRDYSV 462

Query: 367 DVSIG--NALMNMYSKCGSITSSHQIFNEMAARDFVS-WTTLISGYGFHGYGEEAL---Q 420
           +      + L+++  + G +  ++ +   M  +     WT L+S    H   + A+   Q
Sbjct: 463 EPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTALLSACRLHRNVKLAVISAQ 522

Query: 421 LFLEMQESGV 430
              E+   GV
Sbjct: 523 KLFELNPDGV 532


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 177/538 (32%), Positives = 303/538 (56%), Gaps = 2/538 (0%)

Query: 40  AQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNS 99
           A    + G+ LH  A+  G D++  ++++L+ +Y KFS+   A ++FD+MP RDT+ WN+
Sbjct: 115 ASPDDNLGMCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNT 174

Query: 100 IINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDG 159
           +I    +N  Y  S+++F++M   G  L +  +A ++   +++ E+++G  I  L +  G
Sbjct: 175 MITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLG 234

Query: 160 SFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLF 219
            F    +V T L+ ++SKC     A  +F  +   + VS+ A+ISG   +   +  +  F
Sbjct: 235 -FHFDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYF 293

Query: 220 RAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCEC 279
           R +   G + +  T+  ++   +    L     I G+    G      +S AL  +Y   
Sbjct: 294 RELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRL 353

Query: 280 TEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAI 339
            E +  AR +F+ +  K V  W+++I GY+QSG    A+ LF  M      PN VT+ +I
Sbjct: 354 NE-IDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSI 412

Query: 340 LSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDF 399
           LS+C +   LS G  VH  I    L  ++ +  AL++MY+KCG+I+ + Q+F+  + ++ 
Sbjct: 413 LSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNT 472

Query: 400 VSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNN 459
           V+W T+I GYG HGYG+EAL+LF EM   G +P ++T L++L AC+HAGLV+E + +F+ 
Sbjct: 473 VTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHA 532

Query: 460 VMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLE 519
           ++ + +I    EHYAC VD+LG++G++E A + +  MP++P   +  +L+ AC IH    
Sbjct: 533 MVNKYRIEPLAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGACMIHKDTN 592

Query: 520 VAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +A + + +L E +P N   Y LLS + S   N+  A  V   ++ + LSK+ G + IE
Sbjct: 593 LARVASERLFELDPGNVGYYVLLSNIYSVERNFPKAASVREAVKKRNLSKTPGCTLIE 650


>gi|302768409|ref|XP_002967624.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
 gi|300164362|gb|EFJ30971.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
          Length = 795

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 186/573 (32%), Positives = 304/573 (53%), Gaps = 4/573 (0%)

Query: 5   HFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPV 64
           HF +  +   K  L  SG+  +     S++   +  + +   G ++H   +++G + D +
Sbjct: 96  HFGDAMVLFRKMLL--SGVSPDRITFTSILLKWSGRERNLDEGKRVHSHIMQTGYEGDRM 153

Query: 65  ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG 124
           + N ++ MY K    E A  +FD +   +  SW  II  + QNG  +  L +   M   G
Sbjct: 154 VMNLVVEMYGKCGDVEQAGNVFDSIQDPNVFSWTIIIAAYAQNGHCMEVLRLLSRMNQAG 213

Query: 125 FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
                     ++  C+ +G LE  + +HA  I     +    V TAL++LY KC     A
Sbjct: 214 VKPDGYTFTTVLGACTAVGALEEAKILHAATISSTGLDRDAAVGTALINLYGKCGALEEA 273

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
             VF Q+  ++ VSW++MI+    S    + I L   M  EGV+P  VT   VL A   L
Sbjct: 274 FGVFVQIDNKDIVSWSSMIAAFAQSGQAKSAIQLLMLMDLEGVRPNNVTFVNVLEAVTSL 333

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
           +  + GK IH      G+  D  L++AL+ MYC     +  AR IFE ++ +DVV WSS+
Sbjct: 334 KAFQYGKEIHARIVQAGYSDDVCLTSALVKMYCNWG-WVETARSIFESSRERDVVSWSSM 392

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
           I GYSQ+   + A+ LF  M ++ ++PNSVT ++ + +C     L  G  +H  +   GL
Sbjct: 393 IAGYSQNESPARALSLFREMEVDGVQPNSVTFVSAIDACAGVGALRRGTQLHERVRCLGL 452

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
           + DV +  AL+N+Y KCG +  +  +F  M  ++ ++WT++   YG +G+G  +L+L   
Sbjct: 453 DKDVPVATALVNLYGKCGRLEEAEAVFLGMKKKNLLTWTSIAMAYGQNGHGSRSLKLLHG 512

Query: 425 MQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSG 484
           M+  G++PD I  +AIL +CN+AG + +    +N + ++  IA A+EH  C VD+LG++G
Sbjct: 513 MELQGMKPDGIVFVAILVSCNYAGQMSKGLHYYNLMTQDFGIAPAVEHCGCMVDILGRAG 572

Query: 485 KIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSM 544
           K+E A ++++TM  + S   +  L++AC+ H     A   A ++ + EP+NA  Y LLS 
Sbjct: 573 KLEAAEQLINTMKFESSLAWM-MLLTACKAHNDTARAARAAEKIFQLEPKNATPYVLLSS 631

Query: 545 VCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           V   +G+W  AEE  R M  +G+ +  G S IE
Sbjct: 632 VFCAAGSWEAAEETRRRMDGRGVQRLLGRSSIE 664



 Score =  212 bits (539), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 141/479 (29%), Positives = 240/479 (50%), Gaps = 15/479 (3%)

Query: 28  AILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFD 87
           AIL +     A  +  +  GL +  + L+     + ++ N +I MY +    + A  +FD
Sbjct: 15  AILTACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMYLRCGCTDLALDVFD 74

Query: 88  EMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI-ISLCSQIGELE 146
            M  ++ ++W S+I+ FT  G +  ++ +FR+M L G          I +    +   L+
Sbjct: 75  RMKDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRITFTSILLKWSGRERNLD 134

Query: 147 LGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGC 206
            G+++H+ ++  G +E    V   ++++Y KC     A  VF+ +   N  SWT +I+  
Sbjct: 135 EGKRVHSHIMQTG-YEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQDPNVFSWTIIIAAY 193

Query: 207 IDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY-CCGFDFD 265
             + +    + L   M + GVKP   T T VL AC  +  L   K +H       G D D
Sbjct: 194 AQNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKILHAATISSTGLDRD 253

Query: 266 HHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR 325
             +  AL+++Y +C  AL  A  +F +   KD+V WSS+I  ++QSG    A++L   M 
Sbjct: 254 AAVGTALINLYGKCG-ALEEAFGVFVQIDNKDIVSWSSMIAAFAQSGQAKSAIQLLMLMD 312

Query: 326 LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSIT 385
           LE + PN+VT + +L + T      +G  +H  I++AG + DV + +AL+ MY   G + 
Sbjct: 313 LEGVRPNNVTFVNVLEAVTSLKAFQYGKEIHARIVQAGYSDDVCLTSALVKMYCNWGWVE 372

Query: 386 SSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
           ++  IF     RD VSW+++I+GY  +     AL LF EM+  GV+P+++T ++ + AC 
Sbjct: 373 TARSIFESSRERDVVSWSSMIAGYSQNESPARALSLFREMEVDGVQPNSVTFVSAIDACA 432

Query: 446 HAGLVKEAETLFNNVM-----KEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
             G ++    L   V      K+  +A A+      V+L GK G++E+A  V   M  K
Sbjct: 433 GVGALRRGTQLHERVRCLGLDKDVPVATAL------VNLYGKCGRLEEAEAVFLGMKKK 485



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 171/317 (53%), Gaps = 7/317 (2%)

Query: 133 AGIISLCSQIGELELGRQIHALVIVDGSFELS----VFVSTALLDLYSKCHHWLIALRVF 188
           A I++ CS +  L  G+++H LV+ +   +        +   ++ +Y +C    +AL VF
Sbjct: 14  AAILTACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMYLRCGCTDLALDVF 73

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA-CAELRDL 247
           ++M  +N V+WT++IS    + ++   + LFR M   GV P R+T T +LL      R+L
Sbjct: 74  DRMKDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRITFTSILLKWSGRERNL 133

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
             GK +H +    G++ D  +   ++ MY +C + +  A  +F+  +  +V  W+ II  
Sbjct: 134 DEGKRVHSHIMQTGYEGDRMVMNLVVEMYGKCGD-VEQAGNVFDSIQDPNVFSWTIIIAA 192

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVH-CYIMKAGLNF 366
           Y+Q+G   E ++L SRM    ++P+  T   +L +CT    L     +H   I   GL+ 
Sbjct: 193 YAQNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKILHAATISSTGLDR 252

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           D ++G AL+N+Y KCG++  +  +F ++  +D VSW+++I+ +   G  + A+QL + M 
Sbjct: 253 DAAVGTALINLYGKCGALEEAFGVFVQIDNKDIVSWSSMIAAFAQSGQAKSAIQLLMLMD 312

Query: 427 ESGVEPDAITVLAILSA 443
             GV P+ +T + +L A
Sbjct: 313 LEGVRPNNVTFVNVLEA 329



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 123/263 (46%), Gaps = 22/263 (8%)

Query: 324 MRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS-----IGNALMNMY 378
           M    I+       AIL++C+    L  G  VH  +M+  L  D       + N ++ MY
Sbjct: 1   MEAREIQAEISACAAILTACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMY 60

Query: 379 SKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
            +CG    +  +F+ M  ++ V+WT+LIS + F G+  +A+ LF +M  SGV PD IT  
Sbjct: 61  LRCGCTDLALDVFDRMKDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRITFT 120

Query: 439 AI-LSACNHAGLVKEAETLFNNVMKE----KKIALAIEHYACYVDLLGKSGKIEDACKVV 493
           +I L        + E + + +++M+      ++ + +      V++ GK G +E A  V 
Sbjct: 121 SILLKWSGRERNLDEGKRVHSHIMQTGYEGDRMVMNL-----VVEMYGKCGDVEQAGNVF 175

Query: 494 STMPMKPSTRILSSLVSACRIHGR-LEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNW 552
            ++   P+    + +++A   +G  +EV  +L+         +   +T +   C+     
Sbjct: 176 DSI-QDPNVFSWTIIIAAYAQNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGACTA---- 230

Query: 553 LGAEEVWRVMRAKGLSKSYGFSR 575
           +GA E  +++ A  +S S G  R
Sbjct: 231 VGALEEAKILHAATIS-STGLDR 252


>gi|449519412|ref|XP_004166729.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial-like [Cucumis sativus]
          Length = 781

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 191/539 (35%), Positives = 306/539 (56%), Gaps = 19/539 (3%)

Query: 46  FGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT 105
           FG QLH  ALK G   D  + N+L++MY+++     A ++FDEMP RD +SW+++I  + 
Sbjct: 189 FGWQLHTLALKCGFKGDVFVGNALVTMYSRWEHLVDARKVFDEMPSRDRVSWSAMITGYA 248

Query: 106 QNGFY-VRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELS 164
           Q G   ++++ +F +M   G       + G +S+C     LELG+QIH L +  G  E  
Sbjct: 249 QEGDNGLQAILVFVQMVREGVKFDNVPITGALSVCGHERNLELGKQIHCLAVKTGH-ETH 307

Query: 165 VFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTG-IDLFRAMQ 223
             V   L+  YSKC     A  VFE +  RN +SWT MIS       Y+ G + LF  M+
Sbjct: 308 TSVGNVLISTYSKCEIIEDAKAVFELINDRNVISWTTMIS------LYEEGAVSLFNKMR 361

Query: 224 REGVKPTRVTLTIVLLACAELRDL-RNGKAIHGYAYCCGFDFDHHLSA--ALMHMYCECT 280
            +GV P  VT  I LL    +R++   G  +HG   C   DF   L+   +L+ MY +  
Sbjct: 362 LDGVYPNDVTF-IGLLHAITIRNMVEQGLMVHGL--CIKADFVSELTVGNSLITMYAKF- 417

Query: 281 EALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAIL 340
           E +  A  +F     ++++ W+++I GY+Q+    EA++ F    +E  +PN  T  ++L
Sbjct: 418 EFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAIME-YKPNEYTFGSVL 476

Query: 341 S--SCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARD 398
           +  S      L HG   H +++K GLN D  I  AL++MY+K GSI  S ++FNE + + 
Sbjct: 477 NAISAGEDISLKHGQRCHSHLIKVGLNVDPIISGALLDMYAKRGSIQESQRVFNETSKQS 536

Query: 399 FVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFN 458
             +WT LISGY  HG  E  ++LF EM++  ++PDA+  L++L+AC+   +V      FN
Sbjct: 537 QFAWTALISGYAQHGDYESVIKLFEEMEKERIKPDAVIFLSVLTACSRNRMVDMGRQFFN 596

Query: 459 NVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRL 518
            ++K+  I    EHY+C VD+LG++G++E+A ++++ +P  P    L SL+ ACR HG +
Sbjct: 597 MMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILARIPGGPGVSALQSLLGACRTHGNV 656

Query: 519 EVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           E+AE +A+ L++ EP  +  Y L+S + ++ G+W    +V + MR +G+ K  GFS ++
Sbjct: 657 EMAERIANDLMKKEPLESGPYVLMSNLYAQKGDWEKVAKVRKEMRERGVMKEIGFSWVD 715



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 172/610 (28%), Positives = 285/610 (46%), Gaps = 74/610 (12%)

Query: 9   QTLHLYKQELHPSGLYSNTA--ILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           Q+L  +K      GL  N     L   +KAC         G Q+H   + SG  +   +S
Sbjct: 56  QSLRFFKNNFR-WGLDGNADEFTLVLALKACC---GFPKLGRQIHGFVISSGFVSHITVS 111

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           NSL++MY K  + E A+ +F  +   D +SWN+I++ F ++     +L     M L G  
Sbjct: 112 NSLMNMYCKSGQLERAFSVFQNLHDPDIVSWNTILSGFEKS---ENALSFALRMNLNGVK 168

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
             +      +S C    E   G Q+H L +  G F+  VFV  AL+ +YS+  H + A +
Sbjct: 169 FDSVTYTTALSFCLDGEEFLFGWQLHTLALKCG-FKGDVFVGNALVTMYSRWEHLVDARK 227

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGID---LFRAMQREGVKPTRVTLTIVLLACAE 243
           VF++M  R+ VSW+AMI+G   +Q  D G+    +F  M REGVK   V +T  L  C  
Sbjct: 228 VFDEMPSRDRVSWSAMITGY--AQEGDNGLQAILVFVQMVREGVKFDNVPITGALSVCGH 285

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
            R+L  GK IH  A   G +    +   L+  Y +C E +  A+ +FE    ++V+ W++
Sbjct: 286 ERNLELGKQIHCLAVKTGHETHTSVGNVLISTYSKC-EIIEDAKAVFELINDRNVISWTT 344

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           +I  Y +      A+ LF++MRL+ + PN VT + +L + T ++ +  GL VH   +KA 
Sbjct: 345 MISLYEEG-----AVSLFNKMRLDGVYPNDVTFIGLLHAITIRNMVEQGLMVHGLCIKAD 399

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
              ++++GN+L+ MY+K   +  + ++F E+  R+ +SW  LISGY  +   +EAL+ FL
Sbjct: 400 FVSELTVGNSLITMYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFL 459

Query: 424 ------------------------------------EMQESGVEPDAITVLAILSACNHA 447
                                                + + G+  D I   A+L      
Sbjct: 460 YAIMEYKPNEYTFGSVLNAISAGEDISLKHGQRCHSHLIKVGLNVDPIISGALLDMYAKR 519

Query: 448 GLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP---MKPSTRI 504
           G ++E++ +FN   K+ + A     +   +    + G  E   K+   M    +KP   I
Sbjct: 520 GSIQESQRVFNETSKQSQFA-----WTALISGYAQHGDYESVIKLFEEMEKERIKPDAVI 574

Query: 505 LSSLVSACRIH-----GRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVW 559
             S+++AC  +     GR     M+   +IE E E   +Y+ +  +   +G    AEE+ 
Sbjct: 575 FLSVLTACSRNRMVDMGRQFFNMMIKDHMIEPEGE---HYSCMVDMLGRAGRLEEAEEIL 631

Query: 560 -RVMRAKGLS 568
            R+    G+S
Sbjct: 632 ARIPGGPGVS 641



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 120/380 (31%), Positives = 193/380 (50%), Gaps = 13/380 (3%)

Query: 76  FSKPESAYQLFDEMPYRDTISWNSII-NCFTQNGFYVRSLEMFREMYLCGFVLKAELLAG 134
           F   +  + LFD+ P  +  S+N ++ N   ++G + +SL  F+  +  G    A+    
Sbjct: 20  FRSFQHDHNLFDQSPPPNAASFNRVLLNYLPRDGAF-QSLRFFKNNFRWGLDGNADEFTL 78

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           +++L +  G  +LGRQIH  VI  G F   + VS +L+++Y K      A  VF+ +   
Sbjct: 79  VLALKACCGFPKLGRQIHGFVISSG-FVSHITVSNSLMNMYCKSGQLERAFSVFQNLHDP 137

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
           + VSW  ++SG   S+N    +     M   GVK   VT T  L  C +  +   G  +H
Sbjct: 138 DIVSWNTILSGFEKSEN---ALSFALRMNLNGVKFDSVTYTTALSFCLDGEEFLFGWQLH 194

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
             A  CGF  D  +  AL+ MY    E L  AR +F+    +D V WS++I GY+Q GD 
Sbjct: 195 TLALKCGFKGDVFVGNALVTMYSRW-EHLVDARKVFDEMPSRDRVSWSAMITGYAQEGDN 253

Query: 315 S-EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNA 373
             +A+ +F +M  E ++ ++V +   LS C  +  L  G  +HC  +K G     S+GN 
Sbjct: 254 GLQAILVFVQMVREGVKFDNVPITGALSVCGHERNLELGKQIHCLAVKTGHETHTSVGNV 313

Query: 374 LMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPD 433
           L++ YSKC  I  +  +F  +  R+ +SWTT+IS      Y E A+ LF +M+  GV P+
Sbjct: 314 LISTYSKCEIIEDAKAVFELINDRNVISWTTMIS-----LYEEGAVSLFNKMRLDGVYPN 368

Query: 434 AITVLAILSACNHAGLVKEA 453
            +T + +L A     +V++ 
Sbjct: 369 DVTFIGLLHAITIRNMVEQG 388


>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 185/561 (32%), Positives = 300/561 (53%), Gaps = 41/561 (7%)

Query: 57  SGSDADPVISNSLISMYAKFSKPESAYQLFDEMP-----YRDTISWNSIINCFTQNGFYV 111
           SG   D V  N++IS YA+  + E A + F EM        + +SW ++I    QNG+  
Sbjct: 285 SGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDF 344

Query: 112 RSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTAL 171
            +L +FR+M L G    +  +A  +S C+ +  L  GR+IH   I     +  + V  +L
Sbjct: 345 EALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSL 404

Query: 172 LDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDL------------- 218
           +D Y+KC    +A R F  +   + VSW AM++G     +++  I+L             
Sbjct: 405 VDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDI 464

Query: 219 ----------------------FRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
                                 F+ M   G+ P   T++  L AC ++R+L+ GK IHGY
Sbjct: 465 ITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGY 524

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
                 +    + +AL+ MY  C ++L  A  +F     +DVV+W+SII   +QSG    
Sbjct: 525 VLRNHIELSTGVGSALISMYSGC-DSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVN 583

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
           A+ L   M L  +E N+VT+++ L +C++ + L  G  +H +I++ GL+    I N+L++
Sbjct: 584 ALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLID 643

Query: 377 MYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAIT 436
           MY +CGSI  S +IF+ M  RD VSW  +IS YG HG+G +A+ LF   +  G++P+ IT
Sbjct: 644 MYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXFRTMGLKPNHIT 703

Query: 437 VLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
              +LSAC+H+GL++E    F  +  E  +  A+E YAC VDLL ++G+  +  + +  M
Sbjct: 704 FTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKM 763

Query: 497 PMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAE 556
           P +P+  +  SL+ ACRIH   ++AE  A  L E EP+++ NY L++ + S +G W  A 
Sbjct: 764 PFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAA 823

Query: 557 EVWRVMRAKGLSKSYGFSRIE 577
           ++  +M+ +G++K  G S IE
Sbjct: 824 KIRCLMKERGVTKPPGCSWIE 844



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 147/597 (24%), Positives = 270/597 (45%), Gaps = 82/597 (13%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           YE+T+ L+   ++  G+  +  + P V KAC+  + ++  G  ++   L  G + +  + 
Sbjct: 171 YEETIKLFYLMVN-EGVRPDHFVFPKVFKACSELKNYR-VGKDVYDYMLSIGFEGNSCVK 228

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
            S++ M+ K  + + A + F+E+ ++D   WN +++ +T  G + ++L+   +M L G  
Sbjct: 229 GSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVK 288

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
                   IIS  +Q G+ E                             SK    +  L+
Sbjct: 289 PDQVTWNAIISGYAQSGQFEEA---------------------------SKYFLEMGGLK 321

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYD-TGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
            F+     N VSWTA+I+G  +   YD   + +FR M  EGVKP  +T+   + AC  L 
Sbjct: 322 DFKP----NVVSWTALIAGS-EQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLS 376

Query: 246 DLRNGKAIHGYAYCC-GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
            LR+G+ IHGY       D D  +  +L+  Y +C  ++  AR  F   K  D+V W+++
Sbjct: 377 LLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKC-RSVEVARRKFGMIKQTDLVSWNAM 435

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIE---------------------------------- 330
           + GY+  G   EA++L S M+ + IE                                  
Sbjct: 436 LAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGM 495

Query: 331 -PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
            PN+ T+   L++C +   L  G  +H Y+++  +     +G+AL++MYS C S+  +  
Sbjct: 496 DPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACS 555

Query: 390 IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL 449
           +F+E++ RD V W ++IS     G    AL L  EM  S VE + +T+++ L AC+    
Sbjct: 556 VFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAA 615

Query: 450 VKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSS 507
           +++ + +   ++   +  L   ++     +D+ G+ G I+ + ++   MP +      + 
Sbjct: 616 LRQGKEIHQFII---RCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVS-WNV 671

Query: 508 LVSACRIHG-RLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMR 563
           ++S   +HG  ++   +           N   +T L   CS SG     EE W+  +
Sbjct: 672 MISVYGMHGFGMDAVNLFQXFRTMGLKPNHITFTNLLSACSHSGL---IEEGWKYFK 725



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 125/460 (27%), Positives = 216/460 (46%), Gaps = 56/460 (12%)

Query: 18  LHPSGLYSNTAILPSVIKACA-------YAQTHQ--------HFGLQLHCTALKSGSDAD 62
           +H +G+ +N A+L S +           YA   Q          G Q+H   + +G D  
Sbjct: 64  VHRNGVLNNAAMLLSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVC 123

Query: 63  PVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL 122
             + + L+ +Y +    E A ++FD+M  R+  SW +I+  +   G Y  ++++F  M  
Sbjct: 124 EFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVN 183

Query: 123 CGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL 182
            G      +   +   CS++    +G+ ++  ++  G FE +  V  ++LD++ KC    
Sbjct: 184 EGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIG-FEGNSCVKGSILDMFIKCGRMD 242

Query: 183 IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
           IA R FE++  ++   W  M+SG      +   +     M+  GVKP +VT   +     
Sbjct: 243 IARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAI----- 297

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKD----V 298
                     I GYA    F+                      ++   E   +KD    V
Sbjct: 298 ----------ISGYAQSGQFE--------------------EASKYFLEMGGLKDFKPNV 327

Query: 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCY 358
           V W+++I G  Q+G   EA+ +F +M LE ++PNS+T+ + +S+CT  S L HG  +H Y
Sbjct: 328 VSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGY 387

Query: 359 IMKA-GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEE 417
            +K   L+ D+ +GN+L++ Y+KC S+  + + F  +   D VSW  +++GY   G  EE
Sbjct: 388 CIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEE 447

Query: 418 ALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLF 457
           A++L  EM+  G+EPD IT   +++     G  K A   F
Sbjct: 448 AIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFF 487



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 120/449 (26%), Positives = 217/449 (48%), Gaps = 48/449 (10%)

Query: 130 ELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
           E+ A I+  C ++  L LG Q+HA ++V+G  ++  F+ + LL++Y +      A R+F+
Sbjct: 90  EIYASILQKCRKLYNLRLGFQVHAQLVVNG-VDVCEFLGSRLLEVYCQTGCVEDARRMFD 148

Query: 190 QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
           +M  RN  SWTA++       +Y+  I LF  M  EGV+P       V  AC+EL++ R 
Sbjct: 149 KMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRV 208

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
           GK ++ Y    GF+ +  +  +++ M+ +C   +  AR  FE  + KDV +W+ ++ GY+
Sbjct: 209 GKDVYDYMLSIGFEGNSCVKGSILDMFIKCGR-MDIARRFFEEIEFKDVFMWNIMVSGYT 267

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
             G+  +A+K  S M+L  ++P+ VT  AI+S                            
Sbjct: 268 SKGEFKKALKCISDMKLSGVKPDQVTWNAIISG--------------------------- 300

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAA-RDF----VSWTTLISGYGFHGYGEEALQLFLE 424
                   Y++ G    + + F EM   +DF    VSWT LI+G   +GY  EAL +F +
Sbjct: 301 --------YAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRK 352

Query: 425 MQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSG 484
           M   GV+P++IT+ + +SAC +  L++    +    +K +++   +      VD   K  
Sbjct: 353 MVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCR 412

Query: 485 KIEDACKVVSTMPMKPSTRILS--SLVSACRIHGRLEVA-EMLAHQLIEAEPENAANYTL 541
            +E A +      M   T ++S  ++++   + G  E A E+L+    +    +   +  
Sbjct: 413 SVEVARR---KFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNG 469

Query: 542 LSMVCSESGNWLGAEEVWRVMRAKGLSKS 570
           L    ++ G+   A E ++ M + G+  +
Sbjct: 470 LVTGFTQYGDGKAALEFFQRMHSMGMDPN 498



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 148/328 (45%), Gaps = 36/328 (10%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           Q +H  G+  NT  +   + AC   +  +  G ++H   L++  +    + ++LISMY+ 
Sbjct: 488 QRMHSMGMDPNTTTISGALAACGQVRNLK-LGKEIHGYVLRNHIELSTGVGSALISMYSG 546

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
               E A  +F E+  RD + WNSII+   Q+G  V +L++ REM L    +    +   
Sbjct: 547 CDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSA 606

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           +  CS++  L  G++IH  +I  G  +   F+  +L+D+Y +C     + R+F+ M  R+
Sbjct: 607 LPACSKLAALRQGKEIHQFIIRCG-LDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRD 665

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
            VSW  MIS           ++LF+  +  G+KP  +T T +L AC+      +G    G
Sbjct: 666 LVSWNVMISVYGMHGFGMDAVNLFQXFRTMGLKPNHITFTNLLSACSH-----SGLIEEG 720

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
           + Y      ++ +  A+    C                          ++   S++G  +
Sbjct: 721 WKYFKMMKTEYAMDPAVEQYAC--------------------------MVDLLSRAGQFN 754

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSC 343
           E ++   +M     EPN+    ++L +C
Sbjct: 755 ETLEFIEKMPF---EPNAAVWGSLLGAC 779



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 91/194 (46%), Gaps = 9/194 (4%)

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
           ++G L+ A  L S M L   +       +IL  C +   L  G  VH  ++  G++    
Sbjct: 66  RNGVLNNAAMLLSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEF 125

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
           +G+ L+ +Y + G +  + ++F++M+ R+  SWT ++  Y   G  EE ++LF  M   G
Sbjct: 126 LGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEG 185

Query: 430 VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACY----VDLLGKSGK 485
           V PD      +  AC+     +  + +++ ++     ++  E  +C     +D+  K G+
Sbjct: 186 VRPDHFVFPKVFKACSELKNYRVGKDVYDYML-----SIGFEGNSCVKGSILDMFIKCGR 240

Query: 486 IEDACKVVSTMPMK 499
           ++ A +    +  K
Sbjct: 241 MDIARRFFEEIEFK 254


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 181/575 (31%), Positives = 303/575 (52%), Gaps = 4/575 (0%)

Query: 5   HFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPV 64
           H + Q LH +   +   G   N  +  +++K    +    H    LH    K G  AD  
Sbjct: 115 HQFHQALH-FILRIFKEGHEVNPFVFTTLLKLLV-SMDLAHLCWTLHACVYKLGHHADAF 172

Query: 65  ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG 124
           +  +LI  Y+     + A  +FD++  +D +SW  ++ C+ +N FY  SL++F +M + G
Sbjct: 173 VGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMG 232

Query: 125 FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
           +      ++G +  C  +    +G+ +H   +  G ++  +FV  ALL+LY+K    + A
Sbjct: 233 YKPNNFTISGALKSCLGLEAFNVGKSVHGCAL-KGCYDHDLFVGIALLELYAKSGEIIDA 291

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
            R+FE+M   + + W+ MI+    S      +DLF  M++  V P   T   VL ACA  
Sbjct: 292 QRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASS 351

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
             L  GK IH      G + +  +S A+M +Y +C E  +  ++ FE    ++ V W++I
Sbjct: 352 VSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKL-FEELPDRNDVTWNTI 410

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
           I GY Q GD   AM LF+ M    ++P  VT  ++L +    + L  GL +H   +K   
Sbjct: 411 IVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMY 470

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
           N D  + N+L++MY+KCG I  +   F++M  RD VSW  +I GY  HG   EAL LF  
Sbjct: 471 NKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDM 530

Query: 425 MQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSG 484
           MQ +  +P+ +T + +LSAC++AGL+ + +  F ++ K+  I   IEHY C V LLG+ G
Sbjct: 531 MQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLG 590

Query: 485 KIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSM 544
           + ++A K++  +  +PS  +  +L+ AC IH ++++  + A  ++E EP + A + LLS 
Sbjct: 591 RFDEAMKLIGEIAYQPSVMVWRALLGACVIHKKVDLGRVCAQHVLEMEPHDDATHVLLSN 650

Query: 545 VCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIENE 579
           + + +G W     V + M+ K + K  G S +EN+
Sbjct: 651 MYATAGRWDNVAFVRKYMQKKKVRKEPGLSWVENQ 685



 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 150/513 (29%), Positives = 256/513 (49%), Gaps = 21/513 (4%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G  LHC  LK G+  D    N L++ Y + +  + A +LFDEMP  +TIS+ ++   +++
Sbjct: 54  GKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSR 113

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           +  + ++L     ++  G  +   +   ++ L   +    L   +HA V   G      F
Sbjct: 114 DHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGH-HADAF 172

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           V TAL+D YS   +  +A  VF+ +  ++ VSWT M++   ++  Y+  + LF  M+  G
Sbjct: 173 VGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMG 232

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
            KP   T++  L +C  L     GK++HG A    +D D  +  AL+ +Y +  E +   
Sbjct: 233 YKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQ 292

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
           R +FE     D++ WS +I  Y+QS    EA+ LF RMR   + PN+ T  ++L +C   
Sbjct: 293 R-LFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASS 351

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
             L  G  +H  ++K GLN +V + NA+M++Y+KCG I +S ++F E+  R+ V+W T+I
Sbjct: 352 VSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTII 411

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN-----HAGLVKEAETLFNNVM 461
            GY   G GE A+ LF  M E  ++P  +T  ++L A         GL   + T+     
Sbjct: 412 VGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYN 471

Query: 462 KEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG----R 517
           K+  +A ++      +D+  K G+I DA      M  +      ++++    +HG     
Sbjct: 472 KDTVVANSL------IDMYAKCGRINDARLTFDKMNKRDEVS-WNAMICGYSMHGMSMEA 524

Query: 518 LEVAEMLAHQLIEAEPENAANYTLLSMVCSESG 550
           L + +M+ H   + +P       +LS  CS +G
Sbjct: 525 LNLFDMMQH--TDCKPNKLTFVGVLS-ACSNAG 554


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 180/558 (32%), Positives = 306/558 (54%), Gaps = 6/558 (1%)

Query: 23  LYSNTAI-LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           LY+N+ I   S   +   + TH+    Q+H   L  G      +   LI   + F     
Sbjct: 12  LYTNSGIHSDSFYASLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITF 71

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A Q+FD++P      WN+II  +++N  +  +L M+  M L      +     ++  CS 
Sbjct: 72  ARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSG 131

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI--RNEVSW 199
           +  L++GR +HA V   G F+  VFV   L+ LY+KC     A  VFE + +  R  VSW
Sbjct: 132 LSHLQMGRFVHAQVFRLG-FDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSW 190

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
           TA++S    +      +++F  M++  VKP  V L  VL A   L+DL+ G++IH     
Sbjct: 191 TAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVK 250

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
            G + +  L  +L  MY +C + +  A+I+F++ K  ++++W+++I GY+++G   EA+ 
Sbjct: 251 MGLEIEPDLLISLNTMYAKCGQ-VATAKILFDKMKSPNLILWNAMISGYAKNGYAREAID 309

Query: 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           +F  M  + + P+++++ + +S+C +   L     ++ Y+ ++    DV I +AL++M++
Sbjct: 310 MFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFA 369

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           KCGS+  +  +F+    RD V W+ +I GYG HG   EA+ L+  M+  GV P+ +T L 
Sbjct: 370 KCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLG 429

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           +L ACNH+G+V+E    F N+M + KI    +HYAC +DLLG++G ++ A +V+  MP++
Sbjct: 430 LLMACNHSGMVREGWWFF-NLMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQ 488

Query: 500 PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVW 559
           P   +  +L+SAC+ H  +E+ E  A QL   +P N  +Y  LS + + +  W    EV 
Sbjct: 489 PGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVR 548

Query: 560 RVMRAKGLSKSYGFSRIE 577
             M+ KGL+K  G S +E
Sbjct: 549 VRMKEKGLNKDVGCSWVE 566


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 192/616 (31%), Positives = 318/616 (51%), Gaps = 66/616 (10%)

Query: 25  SNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQ 84
           S++    S++K C  +Q +Q    +LHC  LK+    +  +SN+LI+ Y K      A+ 
Sbjct: 3   SSSNYYASLLKLCCESQ-NQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHH 61

Query: 85  LFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM----------YLCGFV-------- 126
           +FD +P  +  SWN+I++ +++ G   +  ++F  M           + G+         
Sbjct: 62  VFDHIPQPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDA 121

Query: 127 --------------LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALL 172
                         L     + ++ LCS+   ++LGRQI+  ++  G F   VFV + L+
Sbjct: 122 VRVYKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFG-FGSDVFVGSPLV 180

Query: 173 DLYSKCHHWLIALRVFEQMVIRN-------------------------------EVSWTA 201
           D+Y+K      A R F++M  RN                                +SWT 
Sbjct: 181 DMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTI 240

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           MI+G + +      +D+FR M+  G    + T   VL AC  L  L  GK IH Y     
Sbjct: 241 MITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTD 300

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
              +  + +AL+ MY +C  ++  A  +F+R   K+V+ W++++ GY Q+G   EA+K+F
Sbjct: 301 HKDNVFVGSALVDMYSKC-RSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIF 359

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
             M+   +EP+  TL +++SSC   + L  G   HC  + +GL   +++ NAL+ +Y KC
Sbjct: 360 FEMQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKC 419

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
           GS  +SH++F EM  RD VSWT L++GY   G   E + LF  M   G++PD +T + +L
Sbjct: 420 GSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVL 479

Query: 442 SACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPS 501
           SAC+ AGLV++    F +++KE  I   ++H  C +DLLG++G++E+A   ++ MP  P 
Sbjct: 480 SACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPD 539

Query: 502 TRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRV 561
               ++L+S+CR+HG +E+ +  A  LI  EP+N A+Y LLS + +  G W    ++ R 
Sbjct: 540 VVGWATLLSSCRVHGDMEIGKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRG 599

Query: 562 MRAKGLSKSYGFSRIE 577
           MR K + K  G+S I+
Sbjct: 600 MRDKRVRKEPGYSWIK 615



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 129/438 (29%), Positives = 205/438 (46%), Gaps = 36/438 (8%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
             + +YK  L  + +  N     +++  C+  +     G Q++   LK G  +D  + + 
Sbjct: 120 DAVRVYKLMLKDAAMNLNRITFSTMLILCSKFRC-VDLGRQINGQILKFGFGSDVFVGSP 178

Query: 69  LISMYAKFSKPESAYQLFDEMP-------------------------------YRDTISW 97
           L+ MY K      A + FDEMP                                RD+ISW
Sbjct: 179 LVDMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISW 238

Query: 98  NSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIV 157
             +I    QNG    +L+MFREM L GF +       +++ C  +  L  G+QIHA VI 
Sbjct: 239 TIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIR 298

Query: 158 DGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGID 217
               + +VFV +AL+D+YSKC     A  VF++M  +N +SWTAM+ G   +   +  + 
Sbjct: 299 TDHKD-NVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVK 357

Query: 218 LFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYC 277
           +F  MQR GV+P   TL  V+ +CA L  L  G   H  A   G      +S AL+ +Y 
Sbjct: 358 IFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYG 417

Query: 278 ECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLL 337
           +C    +  R +F    ++D V W++++ GY+Q G  +E + LF RM    ++P+ VT +
Sbjct: 418 KCGSTENSHR-LFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFI 476

Query: 338 AILSSCTRQSFLSHGLG-VHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA 396
            +LS+C+R   +  GL      I + G+   V     ++++  + G +  +    N M  
Sbjct: 477 GVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPC 536

Query: 397 R-DFVSWTTLISGYGFHG 413
             D V W TL+S    HG
Sbjct: 537 HPDVVGWATLLSSCRVHG 554



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 151/332 (45%), Gaps = 14/332 (4%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           +E+  +G   +     SV+ AC         G Q+H   +++    +  + ++L+ MY+K
Sbjct: 259 REMRLAGFAMDQFTFGSVLTACGSLLALGE-GKQIHAYVIRTDHKDNVFVGSALVDMYSK 317

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
               +SA  +F  MP ++ ISW +++  + QNGF   ++++F EM   G       L  +
Sbjct: 318 CRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSV 377

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           IS C+ +  LE G Q H   +V G     + VS AL+ LY KC     + R+F +M IR+
Sbjct: 378 ISSCANLASLEEGAQFHCRALVSGLISF-ITVSNALITLYGKCGSTENSHRLFTEMNIRD 436

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
           EVSWTA+++G       +  I LF  M   G+KP  VT   VL AC+     R G    G
Sbjct: 437 EVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACS-----RAGLVEKG 491

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK------DVVIWSSIIRGYS 309
             Y      +H +   + H  C         R+   R  +       DVV W++++    
Sbjct: 492 LQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLSSCR 551

Query: 310 QSGDLS-EAMKLFSRMRLERIEPNSVTLLAIL 340
             GD+        S + LE   P S  LL+ L
Sbjct: 552 VHGDMEIGKWAADSLIALEPQNPASYVLLSSL 583



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 97/202 (48%), Gaps = 3/202 (1%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           F E+ + ++  E+  +G+  +   L SVI +CA   + +  G Q HC AL SG  +   +
Sbjct: 351 FSEEAVKIFF-EMQRNGVEPDDFTLGSVISSCANLASLEE-GAQFHCRALVSGLISFITV 408

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
           SN+LI++Y K    E++++LF EM  RD +SW +++  + Q G    ++ +F  M   G 
Sbjct: 409 SNALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGL 468

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
                   G++S CS+ G +E G Q    +I +      V   T ++DL  +      A 
Sbjct: 469 KPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEAR 528

Query: 186 RVFEQMVIRNE-VSWTAMISGC 206
                M    + V W  ++S C
Sbjct: 529 NFINNMPCHPDVVGWATLLSSC 550


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 181/528 (34%), Positives = 303/528 (57%), Gaps = 19/528 (3%)

Query: 63  PVISNSLISMYAKFSKPESAYQLFD----------EMPYRDTISWNSIINCFTQNGFYVR 112
           P     LI +Y+K     SA  LFD          + P  ++   N+++  +   G    
Sbjct: 58  PHFLARLIILYSKLGDLHSARTLFDHRHHHHHGHTQAP--NSFLCNTMLRAYANAGRSYE 115

Query: 113 SLEMFREMYLCGFVLKAELLAGIISLC-SQIGELELGRQIHALVIVDGSFELSVFVSTAL 171
           +++++  M   G  +       ++ +C S++G +  G  +H  V+  G F   +FV  AL
Sbjct: 116 AIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAV-FGEVVHGQVVRTG-FGSDLFVEAAL 173

Query: 172 LDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTR 231
           +D+Y+KC     A  VF++M+IR+ V WTAMI+    ++     + LFR MQ EG     
Sbjct: 174 VDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDE 233

Query: 232 VTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFE 291
           +T   V  A  +L D R   ++HGYA   GF  D  +  +++ MY +C   +  AR++F+
Sbjct: 234 ITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAKCGN-VERARLVFD 292

Query: 292 RTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSH 351
           R + ++ + W+S++ GY+Q+G  ++A+ LF++M+    +PN VT L ++S+C+       
Sbjct: 293 RMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHL 352

Query: 352 GLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFN--EMAARDFVSWTTLISGY 409
           G  +H +++ + ++ D ++ NA+M+MY KCG + ++ ++FN  E+  RD  SW  LISGY
Sbjct: 353 GRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGY 412

Query: 410 GFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA 469
           G HG+G+EAL+LF  MQ  GVEP+ IT  +ILSAC+HAGL+ E    F + M +  +   
Sbjct: 413 GVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFAD-MTKLSVRPE 471

Query: 470 IEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLI 529
           ++HYAC VD+LG++G + +A +++  +P +PS  +  +L+ ACRIHG  E+ E+ A+ L 
Sbjct: 472 MKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLF 531

Query: 530 EAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           + EPE+   Y L+S + + S  W   E V + M+++GL K   FS IE
Sbjct: 532 QLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIE 579



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 123/413 (29%), Positives = 213/413 (51%), Gaps = 17/413 (4%)

Query: 11  LHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLI 70
           L++Y Q +   G+  N    P V+K CA ++    FG  +H   +++G  +D  +  +L+
Sbjct: 119 LYIYMQRM---GVGVNNFTYPFVLKVCA-SELGAVFGEVVHGQVVRTGFGSDLFVEAALV 174

Query: 71  SMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE 130
            MYAK  +   A+++FD M  RD + W ++I  + Q    +++L +FR+M   GF L  E
Sbjct: 175 DMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGF-LGDE 233

Query: 131 LLAGIISLCSQIGELELGR---QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
           + A  IS+ S +G+L  GR    +H   +++G F   V V  +++ +Y+KC +   A  V
Sbjct: 234 ITA--ISVASAVGQLGDGRMAISVHGYAVLNG-FIGDVSVGNSIVGMYAKCGNVERARLV 290

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F++M  RN +SW +M+SG   +      + LF  MQ     P  VT  I++ AC+ L   
Sbjct: 291 FDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSK 350

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV--KDVVIWSSII 305
             G+ +H +      D D  L  A+M MY +C + L  A  +F   ++  +DV  W+ +I
Sbjct: 351 HLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGD-LDTAVEMFNNCELGERDVSSWNVLI 409

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
            GY   G   EA++LFSRM++E +EPN +T  +ILS+C+    +  G      + K  + 
Sbjct: 410 SGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTKLSVR 469

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAAR--DFVSWTTLISGYGFHGYGE 416
            ++     +++M  + G +  + ++  ++ +R  D V W  L+     HG  E
Sbjct: 470 PEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEV-WGALLLACRIHGNTE 521


>gi|15228257|ref|NP_188283.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274288|sp|Q9LUS3.1|PP237_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16610
 gi|11994615|dbj|BAB02752.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332642322|gb|AEE75843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 193/579 (33%), Positives = 317/579 (54%), Gaps = 9/579 (1%)

Query: 3   SKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDAD 62
           S  F E+ L LY + L+ SG+       P V+KACA  +     G  +H     S    D
Sbjct: 80  SNDFAEKALDLYYKMLN-SGVRPTKYTYPFVLKACAGLRAIDD-GKLIHSHVNCSDFATD 137

Query: 63  PVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY- 121
             +  +L+  YAK  + E A ++FDEMP RD ++WN++I+ F+ +      + +F +M  
Sbjct: 138 MYVCTALVDFYAKCGELEMAIKVFDEMPKRDMVAWNAMISGFSLHCCLTDVIGLFLDMRR 197

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
           + G       + G+     + G L  G+ +H      G F   + V T +LD+Y+K    
Sbjct: 198 IDGLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRMG-FSNDLVVKTGILDVYAKSKCI 256

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNY-DTGIDLFRAMQREGVK-PTRVTLTIVLL 239
           + A RVF+    +NEV+W+AMI G ++++   + G   F+ +  + V   T V + ++L+
Sbjct: 257 IYARRVFDLDFKKNEVTWSAMIGGYVENEMIKEAGEVFFQMLVNDNVAMVTPVAIGLILM 316

Query: 240 ACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVV 299
            CA   DL  G+ +H YA   GF  D  +   ++  Y +   +L  A   F    +KDV+
Sbjct: 317 GCARFGDLSGGRCVHCYAVKAGFILDLTVQNTIISFYAK-YGSLCDAFRQFSEIGLKDVI 375

Query: 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
            ++S+I G   +    E+ +LF  MR   I P+  TLL +L++C+  + L HG   H Y 
Sbjct: 376 SYNSLITGCVVNCRPEESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYC 435

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEAL 419
           +  G   + SI NALM+MY+KCG +  + ++F+ M  RD VSW T++ G+G HG G+EAL
Sbjct: 436 VVHGYAVNTSICNALMDMYTKCGKLDVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKEAL 495

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK-EKKIALAIEHYACYVD 478
            LF  MQE+GV PD +T+LAILSAC+H+GLV E + LFN++ + +  +   I+HY C  D
Sbjct: 496 SLFNSMQETGVNPDEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRIDHYNCMTD 555

Query: 479 LLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAAN 538
           LL ++G +++A   V+ MP +P  R+L +L+SAC  +   E+   ++ ++ ++  E   +
Sbjct: 556 LLARAGYLDEAYDFVNKMPFEPDIRVLGTLLSACWTYKNAELGNEVSKKM-QSLGETTES 614

Query: 539 YTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
             LLS   S +  W  A  +  + + +GL K+ G+S ++
Sbjct: 615 LVLLSNTYSAAERWEDAARIRMIQKKRGLLKTPGYSWVD 653



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 147/494 (29%), Positives = 258/494 (52%), Gaps = 20/494 (4%)

Query: 68  SLISMYAKFSKPESAYQLFDEMPYR--DTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
           +L  +YA  ++ E A  +FDE+P+   + I+W+ +I  +  N F  ++L+++ +M   G 
Sbjct: 40  NLTRLYASCNEVELARHVFDEIPHPRINPIAWDLMIRAYASNDFAEKALDLYYKMLNSGV 99

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
                    ++  C+ +  ++ G+ IH+ V     F   ++V TAL+D Y+KC    +A+
Sbjct: 100 RPTKYTYPFVLKACAGLRAIDDGKLIHSHVNC-SDFATDMYVCTALVDFYAKCGELEMAI 158

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR-EGVKPTRVTLTIVLLACAEL 244
           +VF++M  R+ V+W AMISG          I LF  M+R +G+ P   T+  +  A    
Sbjct: 159 KVFDEMPKRDMVAWNAMISGFSLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRA 218

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
             LR GKA+HGY    GF  D  +   ++ +Y + ++ +  AR +F+    K+ V WS++
Sbjct: 219 GALREGKAVHGYCTRMGFSNDLVVKTGILDVYAK-SKCIIYARRVFDLDFKKNEVTWSAM 277

Query: 305 IRGYSQSGDLSEAMKLFSRM----RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           I GY ++  + EA ++F +M     +  + P ++ L  IL  C R   LS G  VHCY +
Sbjct: 278 IGGYVENEMIKEAGEVFFQMLVNDNVAMVTPVAIGL--ILMGCARFGDLSGGRCVHCYAV 335

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
           KAG   D+++ N +++ Y+K GS+  + + F+E+  +D +S+ +LI+G   +   EE+ +
Sbjct: 336 KAGFILDLTVQNTIISFYAKYGSLCDAFRQFSEIGLKDVISYNSLITGCVVNCRPEESFR 395

Query: 421 LFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC--YVD 478
           LF EM+ SG+ PD  T+L +L+AC+H   +    +     +       A+    C   +D
Sbjct: 396 LFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYCVVH---GYAVNTSICNALMD 452

Query: 479 LLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENA 536
           +  K GK++ A +V  TM  K      ++++    IHG  + A  L + + E    P+  
Sbjct: 453 MYTKCGKLDVAKRVFDTM-HKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQETGVNPDEV 511

Query: 537 ANYTLLSMVCSESG 550
               +LS  CS SG
Sbjct: 512 TLLAILS-ACSHSG 524



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 108/401 (26%), Positives = 195/401 (48%), Gaps = 12/401 (2%)

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           ++  C +   L LG+ IH  ++       S  V   L  LY+ C+   +A  VF+++   
Sbjct: 5   LLETCIRSRNLVLGQVIHQHLLKRSLTLSSSTVLVNLTRLYASCNEVELARHVFDEIPHP 64

Query: 195 --NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKA 252
             N ++W  MI     +   +  +DL+  M   GV+PT+ T   VL ACA LR + +GK 
Sbjct: 65  RINPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLRAIDDGKL 124

Query: 253 IHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSG 312
           IH +  C  F  D ++  AL+  Y +C E L  A  +F+    +D+V W+++I G+S   
Sbjct: 125 IHSHVNCSDFATDMYVCTALVDFYAKCGE-LEMAIKVFDEMPKRDMVAWNAMISGFSLHC 183

Query: 313 DLSEAMKLFSRM-RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
            L++ + LF  M R++ + PN  T++ +  +  R   L  G  VH Y  + G + D+ + 
Sbjct: 184 CLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSNDLVVK 243

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM----QE 427
             ++++Y+K   I  + ++F+    ++ V+W+ +I GY  +   +EA ++F +M      
Sbjct: 244 TGILDVYAKSKCIIYARRVFDLDFKKNEVTWSAMIGGYVENEMIKEAGEVFFQMLVNDNV 303

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487
           + V P AI +  IL  C   G +     +    +K   I L +      +    K G + 
Sbjct: 304 AMVTPVAIGL--ILMGCARFGDLSGGRCVHCYAVKAGFI-LDLTVQNTIISFYAKYGSLC 360

Query: 488 DACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
           DA +  S + +K      +SL++ C ++ R E +  L H++
Sbjct: 361 DAFRQFSEIGLKDVIS-YNSLITGCVVNCRPEESFRLFHEM 400


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 180/558 (32%), Positives = 305/558 (54%), Gaps = 6/558 (1%)

Query: 23  LYSNTAI-LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           LY+N+ I   S   +   + TH+    Q+H   L  G      +   LI   + F     
Sbjct: 12  LYTNSGIHSDSFYASLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITF 71

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A Q+FD++P      WN+II  +++N  +  +L M+  M L      +     ++  CS 
Sbjct: 72  ARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSG 131

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI--RNEVSW 199
           +  L++GR +HA V   G F+  VFV   L+ LY+KC     A  VFE + +  R  VSW
Sbjct: 132 LSHLQMGRFVHAQVFRLG-FDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSW 190

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
           TA++S    +      +++F  M++  VKP  V L  VL A   L+DL+ G++IH     
Sbjct: 191 TAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVK 250

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
            G + +  L  +L  MY +C + +  A+I+F++ K  ++++W+++I GY+++G   EA+ 
Sbjct: 251 MGLEIEPDLLISLNTMYAKCGQ-VATAKILFDKMKSPNLILWNAMISGYAKNGYAREAID 309

Query: 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           +F  M  + + P+++++ + +S+C +   L     ++ Y+ ++    DV I +AL++M++
Sbjct: 310 MFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFA 369

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           KCGS+  +  +F+    RD V W+ +I GYG HG   EA+ L+  M+  GV P+ +T L 
Sbjct: 370 KCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLG 429

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           +L ACNH+G+V+E    FN  M + KI    +HYAC +DLLG++G ++ A +V+  MP++
Sbjct: 430 LLMACNHSGMVREGWWFFNR-MADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQ 488

Query: 500 PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVW 559
           P   +  +L+SAC+ H  +E+ E  A QL   +P N  +Y  LS + + +  W    EV 
Sbjct: 489 PGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVR 548

Query: 560 RVMRAKGLSKSYGFSRIE 577
             M+ KGL+K  G S +E
Sbjct: 549 VRMKEKGLNKDVGCSWVE 566


>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
          Length = 744

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 193/588 (32%), Positives = 311/588 (52%), Gaps = 41/588 (6%)

Query: 31  PSVIKACAYAQTHQH--------FGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESA 82
           PS   + AYA   Q          G  LHC  LK G   D    N L++MY K      A
Sbjct: 33  PSEFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDA 92

Query: 83  YQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQI 142
            +LFDEMP R+TIS+ ++I  + ++  ++ ++E+F  ++  G  L   +   I+ L    
Sbjct: 93  SKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVST 152

Query: 143 GELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAM 202
              ELG  IHA +   G  E + FV TAL+D YS C    +A  VF+ ++ ++ VSWT M
Sbjct: 153 DCGELGWGIHACIFKLGH-ESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGM 211

Query: 203 ISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGF 262
           ++   ++  +   + LF  M+  G KP   T   V  AC  L     GK++HG A    +
Sbjct: 212 VTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRY 271

Query: 263 DFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFS 322
           + D ++  AL+ +Y +  + +  AR  FE    KDV+ WS +I  Y+QS    EA+++F 
Sbjct: 272 ELDLYVGVALLDLYTKSGD-IDDARRAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFF 330

Query: 323 RMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCG 382
           +MR   + PN  T  ++L +C     L+ G  +HC+++K GL+ DV + NALM++Y+KCG
Sbjct: 331 QMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCG 390

Query: 383 SITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE----------- 431
            + +S ++F E   R+ V+W T+I G+   G GE+AL+LFL M E  V+           
Sbjct: 391 RMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALR 450

Query: 432 --------------------PDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIE 471
                               PD +T + +LSAC +AGL+ + +  F +++++  I   IE
Sbjct: 451 ACASLAALEPGLQIHSLTVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIE 510

Query: 472 HYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA 531
           HY C V LLG+ G ++ A K++  +P +PS  +  +L+ AC IH  +E+  + A +++E 
Sbjct: 511 HYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEM 570

Query: 532 EPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIENE 579
           EP++ A + LLS + + +  W     V + M+ KG+ K  G S IE++
Sbjct: 571 EPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQ 618


>gi|449449950|ref|XP_004142727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Cucumis sativus]
          Length = 712

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 175/569 (30%), Positives = 305/569 (53%), Gaps = 3/569 (0%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           + L L+ +    S L  +  +L   +K C     +  +G  LH  ++K+G      + ++
Sbjct: 98  EALRLFSKMRLQSELRIDPFLLSLGLKTCGLGLNYL-YGTNLHGFSVKTGLVNSVFVGSA 156

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           L+ MY K  +   + ++FDEMP R+ ++W ++I    + G+    L  F  M        
Sbjct: 157 LLDMYMKIGEIGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYD 216

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
           +   A  +   +  G L  GR IH   +  G F+ + FV+ +L  +Y+KC      L  F
Sbjct: 217 SYAYAIALKASADSGALNHGRSIHTQTLKKG-FDENSFVANSLTTMYNKCGKLDYGLHTF 275

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
            +M   + VSWT +++  I     D G+  F+ M+   V P   T + V+  CA    L+
Sbjct: 276 RKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLK 335

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
            G+ +H +  C GF     ++ ++M +Y +C E L     +F   K +D++ WS+II  Y
Sbjct: 336 WGEQLHAHVLCVGFVNALSVANSIMTLYSKCGE-LASVSKVFCSMKFRDIITWSTIIAAY 394

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
           SQ G   EA +  SRMR E  +PN   L ++LS C   + L  G  +H +++  GL    
Sbjct: 395 SQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTS 454

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
            + +AL+ MY+KCGSI  + +IF +    D +SWT +ISGY  HG+ +EA++LF  +Q+ 
Sbjct: 455 MVCSALIIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIELFENIQKV 514

Query: 429 GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIED 488
           G+ PD++T + +L+AC+HAG+V      FN++ K+  I  + EHY C +DLL ++G++ D
Sbjct: 515 GLRPDSVTFIGVLTACSHAGMVDLGFYYFNSMSKDYHITPSKEHYGCMIDLLCRAGRLHD 574

Query: 489 ACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSE 548
           A  ++ +MP++    + S+L+ ACRIHG ++  +  A ++++ +P  A  +  L+ + + 
Sbjct: 575 AETLIRSMPIQWDDVVWSTLLRACRIHGDVDCGQRAAAEVLKLDPNCAGTHITLANIFAA 634

Query: 549 SGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            G W  A  +  +M++KG+ K  G+S ++
Sbjct: 635 KGKWKEAANIRMLMKSKGVVKEPGWSSVK 663



 Score =  211 bits (537), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 140/497 (28%), Positives = 244/497 (49%), Gaps = 18/497 (3%)

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D   +N+ + +  K +  + A  LFD++P RD +SW +II+ +  +     +L +F +M 
Sbjct: 48  DLAEANNQLKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMR 107

Query: 122 L-CGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
           L     +   LL+  +  C        G  +H   +  G    SVFV +ALLD+Y K   
Sbjct: 108 LQSELRIDPFLLSLGLKTCGLGLNYLYGTNLHGFSVKTGLVN-SVFVGSALLDMYMKIGE 166

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
              + +VF++M  RN V+WTA+I+G + +   + G+  F  M R  V+       I L A
Sbjct: 167 IGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKA 226

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTE---ALHPARIIFERTKVKD 297
            A+   L +G++IH      GFD +  ++ +L  MY +C +    LH     F + +  D
Sbjct: 227 SADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHT----FRKMRTLD 282

Query: 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHC 357
           VV W++I+  Y Q G     ++ F RMR   + PN  T  A++S C   + L  G  +H 
Sbjct: 283 VVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHA 342

Query: 358 YIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEE 417
           +++  G    +S+ N++M +YSKCG + S  ++F  M  RD ++W+T+I+ Y   GYGEE
Sbjct: 343 HVLCVGFVNALSVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEE 402

Query: 418 ALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC-- 475
           A +    M+  G +P+   + ++LS C    ++++ + L  +V+    + L      C  
Sbjct: 403 AFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVL---SVGLEQTSMVCSA 459

Query: 476 YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGR-LEVAEMLAH-QLIEAEP 533
            + +  K G I +A K+      K      ++++S    HG   E  E+  + Q +   P
Sbjct: 460 LIIMYAKCGSIAEASKIFMD-SWKDDIISWTAMISGYAEHGHSQEAIELFENIQKVGLRP 518

Query: 534 ENAANYTLLSMVCSESG 550
           ++     +L+  CS +G
Sbjct: 519 DSVTFIGVLT-ACSHAG 534


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 179/548 (32%), Positives = 301/548 (54%), Gaps = 4/548 (0%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPY 91
           +++K CA A+     G  +H      G  ++ + S +L +MY K  +P  A ++FD MP 
Sbjct: 21  ALLKLCA-ARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRMPS 79

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMY--LCGFVLKAELLAGIISLCSQIGELELGR 149
           RD ++WN+++  + +NG    ++E    M     G    +  L  ++  C+    L   R
Sbjct: 80  RDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHACR 139

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
           ++HA  +  G  EL V VSTA+LD Y KC     A  VF+ M +RN VSW AMI G  D+
Sbjct: 140 EVHAFALRAGLDEL-VNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYADN 198

Query: 210 QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS 269
            N    + LF  M +EGV  T  ++   L AC EL  L   + +H      G   +  ++
Sbjct: 199 GNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSSNVSVT 258

Query: 270 AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
            AL+  Y +C  A   A++  E    K  + W+++I G++Q+    +A +LF+RM+LE +
Sbjct: 259 NALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQLENV 318

Query: 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
            P+S TL++++ +    S       +H Y ++  L+ DV +  AL++MYSKCG ++ + +
Sbjct: 319 RPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSIARR 378

Query: 390 IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL 449
           +F+    R  ++W  +I GYG HG+G+ A++LF EM+ +G  P+  T L++L+AC+HAGL
Sbjct: 379 LFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVLAACSHAGL 438

Query: 450 VKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLV 509
           V E +  F ++ K+  +   +EHY   VDLLG++GK+++A   +  MP++P   +  +++
Sbjct: 439 VDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMPIEPGISVYGAML 498

Query: 510 SACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSK 569
            AC++H  +E+AE  A  + E  PE    + LL+ + + +  W     V   M  KGL K
Sbjct: 499 GACKLHKNVELAEESAQIIFELGPEEGVYHVLLANIYANASMWKDVARVRTAMEKKGLQK 558

Query: 570 SYGFSRIE 577
           + G+S I+
Sbjct: 559 TPGWSIIQ 566



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 78/226 (34%), Positives = 124/226 (54%), Gaps = 3/226 (1%)

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
           P   T T +L  CA   DL  G+A+H      G   +   S AL +MY +C      AR 
Sbjct: 14  PVLRTFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPAD-ARR 72

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER--IEPNSVTLLAILSSCTRQ 346
           +F+R   +D V W++++ GY+++G  S AM+   RM+ E     P+SVTL+++L +C   
Sbjct: 73  VFDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADA 132

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
             L     VH + ++AGL+  V++  A+++ Y KCG++ ++  +F+ M  R+ VSW  +I
Sbjct: 133 RALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMI 192

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKE 452
            GY  +G   EA+ LF  M + GV+    +VLA L AC   G + E
Sbjct: 193 DGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDE 238



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 83/173 (47%), Gaps = 3/173 (1%)

Query: 331 PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQI 390
           P   T  A+L  C  ++ L+ G  VH  +   GL  +     AL NMY KC     + ++
Sbjct: 14  PVLRTFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRV 73

Query: 391 FNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ--ESGVEPDAITVLAILSACNHAG 448
           F+ M +RD V+W  +++GY  +G    A++  + MQ  E G  PD++T++++L AC  A 
Sbjct: 74  FDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADAR 133

Query: 449 LVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPS 501
            +     +    ++     L +      +D   K G +E A  V   MP++ S
Sbjct: 134 ALHACREVHAFALRAGLDEL-VNVSTAVLDAYCKCGAVEAARAVFDCMPVRNS 185


>gi|242082744|ref|XP_002441797.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
 gi|241942490|gb|EES15635.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
          Length = 839

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 192/576 (33%), Positives = 308/576 (53%), Gaps = 4/576 (0%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V    Y + L L+ Q +   GL  +     SV ++CA A T      QLH  A+K+   A
Sbjct: 213 VQNEQYTRGLELFVQ-MQRLGLGVSQPAYASVFRSCA-AITCLSTARQLHAHAIKNKFSA 270

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D V+  +++ +YAK      A + F  +P     + N+++    + G    +L++F+ M 
Sbjct: 271 DRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVGLVRTGLGAEALQLFQFMT 330

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
             G       L+G+ S C+++     G Q+H L I  G F++ V V  A+LDLY KC   
Sbjct: 331 RSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIKSG-FDVDVCVRNAILDLYGKCKAL 389

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
           + A  VF++M  R+ VSW A+I+    ++ Y+  I     M R G++P   T   VL AC
Sbjct: 390 VEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAYLNEMLRYGMEPDDFTYGSVLKAC 449

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A L+ L  G  +HG A   G   D  +S+ ++ MYC+C   +  A+ + +R   +++V W
Sbjct: 450 AGLQSLEYGSVVHGKAIKSGLGLDAFVSSTVVDMYCKCG-MITEAQKLHDRIGGQELVSW 508

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           +SII G+S +    EA K FS M    ++P+  T   +L +C   + +  G  +H  I+K
Sbjct: 509 NSIISGFSLNKQSEEAQKFFSEMLDIGVKPDHFTYATVLDTCANLATIELGKQIHGQIIK 568

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
             +  D  I + L++MY+KCG++  S  +F +    DFVSW  +I GY  HG G EAL++
Sbjct: 569 QEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKAQKLDFVSWNAMICGYALHGQGFEALEM 628

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
           F  MQ++ V P+  T +A+L AC+H GL+ +    F  +    K+   +EH+AC VD+LG
Sbjct: 629 FERMQQANVVPNHATFVAVLRACSHVGLLDDGCRYFYLMTSRYKLEPQLEHFACMVDILG 688

Query: 482 KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTL 541
           +S   ++A K + +MP++    I  +L+S C+I   +EVAE  A  ++  +P++++ Y L
Sbjct: 689 RSKGPQEALKFIRSMPLEADAVIWKTLLSICKIRQDVEVAETAASNVLRLDPDDSSVYIL 748

Query: 542 LSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           LS V +ESG W+      R+MR   L K  G S IE
Sbjct: 749 LSNVYAESGKWVDVSRTRRLMRQGRLKKEPGCSWIE 784



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 146/537 (27%), Positives = 260/537 (48%), Gaps = 10/537 (1%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           E+   G+  +   L  ++KAC   +     G+Q+H  A+K+G + D    ++L+ MY K 
Sbjct: 126 EMARRGVAPDRTTLAVLLKACGGLEDLA-LGVQIHAVAVKTGLEMDVRAGSALVDMYGKC 184

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
              E A + F  M  R+++SW + I    QN  Y R LE+F +M   G  +     A + 
Sbjct: 185 RSLEDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVF 244

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
             C+ I  L   RQ+HA  I +  F     V TA++D+Y+K    + A R F  +     
Sbjct: 245 RSCAAITCLSTARQLHAHAIKN-KFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTV 303

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
            +  AM+ G + +      + LF+ M R G+    V+L+ V  ACAE++    G  +H  
Sbjct: 304 QACNAMMVGLVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCL 363

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
           A   GFD D  +  A++ +Y +C +AL  A ++F+  + +D V W++II    Q+    +
Sbjct: 364 AIKSGFDVDVCVRNAILDLYGKC-KALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYED 422

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
            +   + M    +EP+  T  ++L +C     L +G  VH   +K+GL  D  + + +++
Sbjct: 423 TIAYLNEMLRYGMEPDDFTYGSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAFVSSTVVD 482

Query: 377 MYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAIT 436
           MY KCG IT + ++ + +  ++ VSW ++ISG+  +   EEA + F EM + GV+PD  T
Sbjct: 483 MYCKCGMITEAQKLHDRIGGQELVSWNSIISGFSLNKQSEEAQKFFSEMLDIGVKPDHFT 542

Query: 437 VLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDACKVVS 494
              +L  C +   ++  + +   ++K++ +    + Y  +  VD+  K G + D+  ++ 
Sbjct: 543 YATVLDTCANLATIELGKQIHGQIIKQEMLG---DEYISSTLVDMYAKCGNMPDSL-LMF 598

Query: 495 TMPMKPSTRILSSLVSACRIHGR-LEVAEMLAHQLIEAEPENAANYTLLSMVCSESG 550
               K      ++++    +HG+  E  EM           N A +  +   CS  G
Sbjct: 599 EKAQKLDFVSWNAMICGYALHGQGFEALEMFERMQQANVVPNHATFVAVLRACSHVG 655



 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 150/526 (28%), Positives = 268/526 (50%), Gaps = 16/526 (3%)

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D V  N++++ YA      +A  LF  MP  D +SWN++++ + Q G +  S+ +  EM 
Sbjct: 69  DTVSWNTMLTAYAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMA 128

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
             G       LA ++  C  + +L LG QIHA+ +  G  E+ V   +AL+D+Y KC   
Sbjct: 129 RRGVAPDRTTLAVLLKACGGLEDLALGVQIHAVAVKTG-LEMDVRAGSALVDMYGKCRSL 187

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             ALR F  M  RN VSW A I+GC+ ++ Y  G++LF  MQR G+  ++     V  +C
Sbjct: 188 EDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSC 247

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A +  L   + +H +A    F  D  +  A++ +Y +  ++L  AR  F       V   
Sbjct: 248 AAITCLSTARQLHAHAIKNKFSADRVVGTAIVDVYAK-ADSLVDARRAFFSLPNHTVQAC 306

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           ++++ G  ++G  +EA++LF  M    I  + V+L  + S+C        GL VHC  +K
Sbjct: 307 NAMMVGLVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIK 366

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
           +G + DV + NA++++Y KC ++  ++ +F EM  RD VSW  +I+    +   E+ +  
Sbjct: 367 SGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAY 426

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETL-FNNVMKEKKI--ALAIEHY--ACY 476
             EM   G+EPD  T  ++L AC  AGL    ++L + +V+  K I   L ++ +  +  
Sbjct: 427 LNEMLRYGMEPDDFTYGSVLKAC--AGL----QSLEYGSVVHGKAIKSGLGLDAFVSSTV 480

Query: 477 VDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE--AEPE 534
           VD+  K G I +A K+   +  +      +S++S   ++ + E A+    ++++   +P+
Sbjct: 481 VDMYCKCGMITEAQKLHDRIGGQELVS-WNSIISGFSLNKQSEEAQKFFSEMLDIGVKPD 539

Query: 535 NAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIENEY 580
           +    T+L    + +   LG +   ++++ + L   Y  S + + Y
Sbjct: 540 HFTYATVLDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMY 585



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 151/340 (44%), Gaps = 35/340 (10%)

Query: 138 LCSQIGE--LELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           LC+  G   L  G+  HA ++V G F  + FVS  LL +Y++C     A  VF+ M  R+
Sbjct: 11  LCAGAGRSALATGQAAHARMLVSG-FMPTTFVSNCLLQMYARCGGAAHARGVFDVMPHRD 69

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQ-------------------------------R 224
            VSW  M++    + +      LF AM                                R
Sbjct: 70  TVSWNTMLTAYAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMAR 129

Query: 225 EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
            GV P R TL ++L AC  L DL  G  IH  A   G + D    +AL+ MY +C  +L 
Sbjct: 130 RGVAPDRTTLAVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKC-RSLE 188

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
            A   F     ++ V W + I G  Q+   +  ++LF +M+   +  +     ++  SC 
Sbjct: 189 DALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCA 248

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
             + LS    +H + +K   + D  +G A++++Y+K  S+  + + F  +      +   
Sbjct: 249 AITCLSTARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNA 308

Query: 405 LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
           ++ G    G G EALQLF  M  SG+  D +++  + SAC
Sbjct: 309 MMVGLVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSAC 348



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 78/188 (41%), Gaps = 34/188 (18%)

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT- 404
           +S L+ G   H  ++ +G      + N L+ MY++CG    +  +F+ M  RD VSW T 
Sbjct: 17  RSALATGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGVFDVMPHRDTVSWNTM 76

Query: 405 ------------------------------LISGYGFHGYGEEALQLFLEMQESGVEPDA 434
                                         L+SGY   G   +++ L +EM   GV PD 
Sbjct: 77  LTAYAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMARRGVAPDR 136

Query: 435 ITVLAILSACNHAGLVKEAETL-FNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVV 493
            T+  +L AC   GL   A  +  + V  +  + + +   +  VD+ GK   +EDA +  
Sbjct: 137 TTLAVLLKAC--GGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFF 194

Query: 494 STMPMKPS 501
             M  + S
Sbjct: 195 HGMGERNS 202


>gi|357510605|ref|XP_003625591.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500606|gb|AES81809.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 887

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 187/563 (33%), Positives = 301/563 (53%), Gaps = 5/563 (0%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           ++  SG + +     SVIKAC Y       G QLH   +KS         N+LISMY  F
Sbjct: 250 QMTRSGQFPDQLTFGSVIKAC-YIAGDIDLGRQLHAHVIKSWFGHHLTSQNALISMYTNF 308

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAG-I 135
            + E A  +F  +P +D ISW ++I  + Q G+ V +L +FR++   G     E + G +
Sbjct: 309 GQIEHASNVFTRIPTKDLISWGTMITGYIQLGYRVEALYLFRDLLRQGTYQPNEFIFGSV 368

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
            S CS + ELE G+Q+H + +  G    +VF   +L D+Y+K      A   F Q+   +
Sbjct: 369 FSACSSLLELEYGKQVHGMCVKFG-LRRNVFAGCSLCDMYAKFGFLPSAKMAFCQIKNPD 427

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
            VSW A+I+   D+ + +  ID FR M   G+ P  +T   +L  C     L  G+ IH 
Sbjct: 428 IVSWNAIIAAFADNGDANEAIDFFRQMIHIGLTPDSITYISLLCTCGSPVRLNQGRQIHS 487

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIF-ERTKVKDVVIWSSIIRGYSQSGDL 314
           Y    GFD +  +  +L+ MY +C+  LH A  +F + ++  ++V W++I+    Q    
Sbjct: 488 YIVKIGFDKEITVCNSLLTMYTKCSH-LHDALNVFRDISRNANLVSWNAILSACLQKKQE 546

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
            E  +L+  M     +P+S+T+  +L +C   + L  G  VHCY +K+GL  DVS+ N L
Sbjct: 547 GETFRLYKEMHFSGNKPDSITITTLLGTCAELTSLGVGNQVHCYSIKSGLILDVSVCNGL 606

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           ++MY+KCGS+  +  +F+     D VSW++LI GY   G G EAL LF  M   GV+P+ 
Sbjct: 607 IDMYAKCGSLKHARDVFDSTQNLDIVSWSSLIVGYAQCGLGHEALNLFRIMTNLGVQPNE 666

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS 494
           +T L  LSAC+H GLV+E   L+ ++  E  I    EH++C VDLL ++G + +A   + 
Sbjct: 667 VTYLGALSACSHIGLVEEGWRLYKSMETEHGIPPTREHFSCIVDLLARAGCLHEAETFIQ 726

Query: 495 TMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLG 554
              +        +L++AC+ H  +++AE  A  +++ +P N+A   +L  + + +GNW  
Sbjct: 727 KSGLDADITAWKTLLAACKTHNNVDIAERGAGNILKLDPSNSAAMVMLCNIHASAGNWEE 786

Query: 555 AEEVWRVMRAKGLSKSYGFSRIE 577
             ++ ++M+  G+ K  G S IE
Sbjct: 787 VAKLRKLMKQMGVQKVPGQSWIE 809



 Score =  201 bits (512), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 125/446 (28%), Positives = 226/446 (50%), Gaps = 5/446 (1%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           +  +H Y++ L  +   L  S  +   +   S++ ACA  ++   +  ++H   LKS   
Sbjct: 133 LCKQHHYKEALEAFDFHLKNSNSHFEPSTYTSLVLACANFRSLD-YAKKIHDHVLKSNYQ 191

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
              ++ N +I+MY K    + A ++FD M   + +SW S+I+ ++QNG    ++ M+ +M
Sbjct: 192 PSIILQNHMINMYGKCGSMKDARKVFDTMQLPNVVSWTSMISGYSQNGQANDAIIMYIQM 251

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
              G          +I  C   G+++LGRQ+HA VI    F   +    AL+ +Y+    
Sbjct: 252 TRSGQFPDQLTFGSVIKACYIAGDIDLGRQLHAHVI-KSWFGHHLTSQNALISMYTNFGQ 310

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV-KPTRVTLTIVLL 239
              A  VF ++  ++ +SW  MI+G I        + LFR + R+G  +P       V  
Sbjct: 311 IEHASNVFTRIPTKDLISWGTMITGYIQLGYRVEALYLFRDLLRQGTYQPNEFIFGSVFS 370

Query: 240 ACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVV 299
           AC+ L +L  GK +HG     G   +     +L  MY +    L  A++ F + K  D+V
Sbjct: 371 ACSSLLELEYGKQVHGMCVKFGLRRNVFAGCSLCDMYAKFG-FLPSAKMAFCQIKNPDIV 429

Query: 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
            W++II  ++ +GD +EA+  F +M    + P+S+T +++L +C     L+ G  +H YI
Sbjct: 430 SWNAIIAAFADNGDANEAIDFFRQMIHIGLTPDSITYISLLCTCGSPVRLNQGRQIHSYI 489

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFHGYGEEA 418
           +K G + ++++ N+L+ MY+KC  +  +  +F +++   + VSW  ++S         E 
Sbjct: 490 VKIGFDKEITVCNSLLTMYTKCSHLHDALNVFRDISRNANLVSWNAILSACLQKKQEGET 549

Query: 419 LQLFLEMQESGVEPDAITVLAILSAC 444
            +L+ EM  SG +PD+IT+  +L  C
Sbjct: 550 FRLYKEMHFSGNKPDSITITTLLGTC 575



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 118/214 (55%), Gaps = 2/214 (0%)

Query: 233 TLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFER 292
           T T ++LACA  R L   K IH +     +     L   +++MY +C  ++  AR +F+ 
Sbjct: 161 TYTSLVLACANFRSLDYAKKIHDHVLKSNYQPSIILQNHMINMYGKCG-SMKDARKVFDT 219

Query: 293 TKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHG 352
            ++ +VV W+S+I GYSQ+G  ++A+ ++ +M      P+ +T  +++ +C     +  G
Sbjct: 220 MQLPNVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQFPDQLTFGSVIKACYIAGDIDLG 279

Query: 353 LGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFH 412
             +H +++K+     ++  NAL++MY+  G I  +  +F  +  +D +SW T+I+GY   
Sbjct: 280 RQLHAHVIKSWFGHHLTSQNALISMYTNFGQIEHASNVFTRIPTKDLISWGTMITGYIQL 339

Query: 413 GYGEEALQLFLEMQESGV-EPDAITVLAILSACN 445
           GY  EAL LF ++   G  +P+     ++ SAC+
Sbjct: 340 GYRVEALYLFRDLLRQGTYQPNEFIFGSVFSACS 373



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 93/184 (50%), Gaps = 3/184 (1%)

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           EA     +      EP++ T L +  +C     L +   +H +++K+     + + N ++
Sbjct: 144 EAFDFHLKNSNSHFEPSTYTSLVL--ACANFRSLDYAKKIHDHVLKSNYQPSIILQNHMI 201

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           NMY KCGS+  + ++F+ M   + VSWT++ISGY  +G   +A+ ++++M  SG  PD +
Sbjct: 202 NMYGKCGSMKDARKVFDTMQLPNVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQFPDQL 261

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           T  +++ AC  AG +     L  +V+K       +      + +    G+IE A  V + 
Sbjct: 262 TFGSVIKACYIAGDIDLGRQLHAHVIKS-WFGHHLTSQNALISMYTNFGQIEHASNVFTR 320

Query: 496 MPMK 499
           +P K
Sbjct: 321 IPTK 324


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 179/546 (32%), Positives = 309/546 (56%), Gaps = 20/546 (3%)

Query: 48  LQLHCTALKSGSDA-----------DPVISNSLISMYAKFSKPESAY--QLFDEMPYRDT 94
           L+ HCT++     A           +P+ S+ LIS  A     +  Y  +LF +M   D 
Sbjct: 17  LKTHCTSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDP 76

Query: 95  ISWNSIINCF--TQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIH 152
              N++I  +  +QN +   SL  F  M   G  +       +++ C+++G ++LGR+ H
Sbjct: 77  FICNTMIRGYARSQNPYEAVSLYYF--MVERGVPVDNYTYPFVLAACARLGAVKLGRRFH 134

Query: 153 ALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNY 212
             V+ +G F   +FV  AL+  Y  C  +  A  VF++  +R+ V+W  MI+  ++    
Sbjct: 135 CEVLKNG-FGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLS 193

Query: 213 DTGIDLFRAMQR-EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAA 271
           +   DL   M + + ++P  VT+  ++ ACA+L +L  GK +H Y+   G D +  ++ A
Sbjct: 194 EKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNA 253

Query: 272 LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP 331
           ++ MYC+C + +  A+ +F R + KDV+ W+S++ G ++SG   EA+ LF +M+L +IE 
Sbjct: 254 ILDMYCKCDD-IESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIEL 312

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIF 391
           + +TL+ +LS+C +   L  G  +H  I K  +N D+ +  AL++MY+KCGSI  + Q+F
Sbjct: 313 DEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVF 372

Query: 392 NEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVK 451
             M  R+  +W  LI G   HG+GE+A+ LF +M+   + PD +T +A+L AC+HAGLV 
Sbjct: 373 RRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVD 432

Query: 452 EAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSA 511
           E   +F  +  + +I   +EHY C VDLL ++ K++DA   +  MP+K ++ + ++L+ A
Sbjct: 433 EGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGA 492

Query: 512 CRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSY 571
           CR  G  ++AE +  ++IE EP++   Y +LS + +    W  A ++ + M+ KG+ K+ 
Sbjct: 493 CRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTP 552

Query: 572 GFSRIE 577
           G S IE
Sbjct: 553 GCSWIE 558



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 115/425 (27%), Positives = 209/425 (49%), Gaps = 10/425 (2%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G+  +    P V+ ACA     +  G + HC  LK+G  +D  + N+LI  Y        
Sbjct: 106 GVPVDNYTYPFVLAACARLGAVK-LGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGC 164

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAEL-LAGIISLCS 140
           A  +FDE   RD ++WN +IN     G   ++ ++  EM     +   E+ +  ++  C+
Sbjct: 165 ACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACA 224

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
           Q+G LE G+ +H+     G  + ++ V+ A+LD+Y KC     A  VF ++  ++ +SWT
Sbjct: 225 QLGNLERGKFLHSYSKELG-LDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWT 283

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
           +M+SG   S  +   + LF+ MQ   ++   +TL  VL ACA+   L  GK IH      
Sbjct: 284 SMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKF 343

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
             + D  L  AL+ MY +C  ++  A  +F R +V++V  W+++I G +  G   +A+ L
Sbjct: 344 EINCDLVLETALVDMYAKCG-SIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISL 402

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN--ALMNMY 378
           F +M  +++ P+ VT +A+L +C+    +  GL +    MK     +  + +   ++++ 
Sbjct: 403 FDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMF-QAMKNKFQIEPRMEHYGCVVDLL 461

Query: 379 SKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
            +   +  +      M  + + V W TL+      G+ + A ++   + E  +EPD+   
Sbjct: 462 CRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIE--LEPDSCGR 519

Query: 438 LAILS 442
             +LS
Sbjct: 520 YVMLS 524



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 177/349 (50%), Gaps = 19/349 (5%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           ++K   E+   L  +      L  +   + S++ ACA     +  G  LH  + + G D 
Sbjct: 188 LNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLER-GKFLHSYSKELGLDE 246

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           +  ++N+++ MY K    ESA ++F+ +  +D +SW S+++   ++G++  +L +F++M 
Sbjct: 247 NLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQ 306

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELS--VFVSTALLDLYSKCH 179
           L    L    L G++S C+Q G L+ G+ IH L+     FE++  + + TAL+D+Y+KC 
Sbjct: 307 LNKIELDEITLVGVLSACAQTGALDQGKYIHLLI---DKFEINCDLVLETALVDMYAKCG 363

Query: 180 HWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLL 239
              +AL+VF +M +RN  +W A+I G     + +  I LF  M+ + + P  VT   +L 
Sbjct: 364 SIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLC 423

Query: 240 ACAELRDLRNGKAIHGYAYCCGFDFDHHLS--AALMHMYCECTEALHPARIIFERTKVK- 296
           AC+    +  G A+   A    F  +  +     ++ + C     +  A    E   +K 
Sbjct: 424 ACSHAGLVDEGLAMF-QAMKNKFQIEPRMEHYGCVVDLLCR-ARKVDDALAFIENMPIKA 481

Query: 297 DVVIWSSIIRGYSQSG---DLSEAMKLFSRMRLERIEPNSVTLLAILSS 342
           + V+W++++ G  +SG   DL+E +      R+  +EP+S     +LS+
Sbjct: 482 NSVLWATLL-GACRSGGHFDLAEKIG----RRVIELEPDSCGRYVMLSN 525


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 184/564 (32%), Positives = 307/564 (54%), Gaps = 5/564 (0%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           +E+  SG   N      V+ AC  ++  +  G Q+H   +++G + D   +N+L+ MY+K
Sbjct: 194 REMVWSGERPNEFGFSCVVNACTGSRDLEA-GRQVHGAVVRTGYEKDVFTANALVDMYSK 252

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
               E A  +F++MP  D +SWN+ I+    +G   R+LE+  +M   G V     L+ +
Sbjct: 253 LGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSV 312

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           +  C+  G   LGRQIH   +V    +   FV+  L+D+Y+K      A +VF+ M  R+
Sbjct: 313 LKACAGAGAFNLGRQIHGF-MVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRD 371

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK--PTRVTLTIVLLACAELRDLRNGKAI 253
            + W A+ISGC     +   + LF  M++EG+     R TL  VL + A    + + + +
Sbjct: 372 LILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQV 431

Query: 254 HGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGD 313
           H  A   G   D H+   L+  Y +C + L  A  +F+ ++  D++  ++++   SQ   
Sbjct: 432 HALAEKIGLLSDSHVINGLIDSYWKCGQ-LDYAIKVFKESRSDDIISSTTMMTALSQCDH 490

Query: 314 LSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNA 373
             +A+KLF +M  + +EP+S  L ++L++CT  S    G  VH +++K     DV  GNA
Sbjct: 491 GEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNA 550

Query: 374 LMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPD 433
           L+  Y+KCGSI  +   F+ +  R  VSW+ +I G   HG+G+ AL LF  M + GV P+
Sbjct: 551 LVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPN 610

Query: 434 AITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVV 493
            IT+ ++LSACNHAGLV +A+  F ++ +   I    EHYAC +D+LG++GK+EDA ++V
Sbjct: 611 HITLTSVLSACNHAGLVDDAKKYFESMKETFGIDRTEEHYACMIDILGRAGKLEDAMELV 670

Query: 494 STMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWL 553
           + MP + +  +  +L+ A R+H   E+  M A +L   EPE +  + LL+   + +G W 
Sbjct: 671 NNMPFQANAAVWGALLGASRVHRDPELGRMAAEKLFTLEPEKSGTHVLLANTYASAGMWD 730

Query: 554 GAEEVWRVMRAKGLSKSYGFSRIE 577
              +V ++M+   + K    S +E
Sbjct: 731 EMAKVRKLMKDSNVKKEPAMSWVE 754



 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 167/566 (29%), Positives = 286/566 (50%), Gaps = 20/566 (3%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G+  N   LP V+K CA       FG Q+H  A+ +    D  ++N+L+++Y  F   + 
Sbjct: 98  GVPCNEFALPVVLK-CA---PDVRFGAQVHALAVATRLVHDVFVANALVAVYGGFGMVDE 153

Query: 82  AYQLFDEM----PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS 137
           A ++FDE       R+ +SWN++I+ + +N     ++ +FREM   G        + +++
Sbjct: 154 ARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVN 213

Query: 138 LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197
            C+   +LE GRQ+H  V+  G +E  VF + AL+D+YSK     +A  VFE+M   + V
Sbjct: 214 ACTGSRDLEAGRQVHGAVVRTG-YEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVV 272

Query: 198 SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
           SW A ISGC+   +    ++L   M+  G+ P   TL+ VL ACA       G+ IHG+ 
Sbjct: 273 SWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFM 332

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
                DFD  ++  L+ MY +    L  AR +F+    +D+++W+++I G S  G   E 
Sbjct: 333 VKAVADFDEFVAVGLVDMYAK-HGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEV 391

Query: 318 MKLFSRMRLE--RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           + LF RMR E   ++ N  TL ++L S      + H   VH    K GL  D  + N L+
Sbjct: 392 LSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLI 451

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           + Y KCG +  + ++F E  + D +S TT+++      +GE+A++LF++M   G+EPD+ 
Sbjct: 452 DSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSF 511

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
            + ++L+AC      ++ + +  +++K +  +      A  V    K G IEDA    S 
Sbjct: 512 VLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNA-LVYAYAKCGSIEDADMAFSG 570

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLI-EAEPENAANYTLLSMVCSESGNWLG 554
           +P +      S+++     HG  + A  L H+++ E    N    T +   C+ +G    
Sbjct: 571 LPERGIVS-WSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDD 629

Query: 555 AEEVWRVMRAKGLSKSYGFSRIENEY 580
           A++ +  M+     +++G  R E  Y
Sbjct: 630 AKKYFESMK-----ETFGIDRTEEHY 650



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 146/505 (28%), Positives = 244/505 (48%), Gaps = 46/505 (9%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G  LH   LKSG  A    SN L+++Y++   P +A  +FDE+P    +SW+S++  ++ 
Sbjct: 23  GAHLHSHLLKSGLLAG--FSNHLLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSN 80

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           NG    +L  FR M   G V   E    ++  C+   ++  G Q+HAL +        VF
Sbjct: 81  NGMPRDALLAFRAMRGRG-VPCNEFALPVVLKCAP--DVRFGAQVHALAVAT-RLVHDVF 136

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMV----IRNEVSWTAMISGCIDSQNYDTGIDLFRAM 222
           V+ AL+ +Y        A R+F++ V     RN VSW  MIS  + +      I +FR M
Sbjct: 137 VANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREM 196

Query: 223 QREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEA 282
              G +P     + V+ AC   RDL  G+ +HG     G++ D   + AL+ MY +  + 
Sbjct: 197 VWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGD- 255

Query: 283 LHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSS 342
           +  A  +FE+    DVV W++ I G    G    A++L  +M+   + PN  TL ++L +
Sbjct: 256 IEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKA 315

Query: 343 CTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSW 402
           C      + G  +H +++KA  +FD  +   L++MY+K G +  + ++F+ M  RD + W
Sbjct: 316 CAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILW 375

Query: 403 TTLISGYGFHGYGEEALQLFLEMQESGVEPDA--ITVLAILSA-------CN----HA-- 447
             LISG    G   E L LF  M++ G++ D    T+ ++L +       C+    HA  
Sbjct: 376 NALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALA 435

Query: 448 ---GLVKEAET---LFNNVMKEKKIALAIEHY-----------ACYVDLLGKSGKIEDAC 490
              GL+ ++     L ++  K  ++  AI+ +              +  L +    EDA 
Sbjct: 436 EKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAI 495

Query: 491 KVVSTM---PMKPSTRILSSLVSAC 512
           K+   M    ++P + +LSSL++AC
Sbjct: 496 KLFVQMLRKGLEPDSFVLSSLLNAC 520



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 118/402 (29%), Positives = 191/402 (47%), Gaps = 13/402 (3%)

Query: 148 GRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCI 207
           G  +H+ ++  G   L    S  LL LYS+C     A  VF+++     VSW+++++   
Sbjct: 23  GAHLHSHLLKSG---LLAGFSNHLLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYS 79

Query: 208 DSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
           ++      +  FRAM+  GV      L +VL  CA   D+R G  +H  A       D  
Sbjct: 80  NNGMPRDALLAFRAMRGRGVPCNEFALPVVL-KCAP--DVRFGAQVHALAVATRLVHDVF 136

Query: 268 LSAALMHMYCECTEALHPARIIFERTKV---KDVVIWSSIIRGYSQSGDLSEAMKLFSRM 324
           ++ AL+ +Y          R+  E   V   ++ V W+++I  Y ++    +A+ +F  M
Sbjct: 137 VANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREM 196

Query: 325 RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSI 384
                 PN      ++++CT    L  G  VH  +++ G   DV   NAL++MYSK G I
Sbjct: 197 VWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDI 256

Query: 385 TSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
             +  +F +M A D VSW   ISG   HG+   AL+L L+M+ SG+ P+  T+ ++L AC
Sbjct: 257 EMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKAC 316

Query: 445 NHAGLVKEAETLFNNVMKEKKIALAIEHYAC-YVDLLGKSGKIEDACKVVSTMPMKPSTR 503
             AG       +   ++  K +A   E  A   VD+  K G ++DA KV   MP +    
Sbjct: 317 AGAGAFNLGRQIHGFMV--KAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLI- 373

Query: 504 ILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV 545
           + ++L+S C   GR      L H++ +   +   N T L+ V
Sbjct: 374 LWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASV 415


>gi|218191314|gb|EEC73741.1| hypothetical protein OsI_08374 [Oryza sativa Indica Group]
          Length = 667

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 181/550 (32%), Positives = 293/550 (53%), Gaps = 6/550 (1%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEM 89
            P   KACA  +  +H G  +HC AL +G   D  + N+LISMY       +A  +F  M
Sbjct: 111 FPFAAKACAGLRLGRH-GRAVHCRALAAGFGGDTYVQNALISMYMSCGDVGAAEAVFGAM 169

Query: 90  PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGR 149
             R  +SWN++I    +NG+  R+LE+F EM   G  +    +  ++  C+Q  +L  GR
Sbjct: 170 RNRTVVSWNAVIAGCVKNGYAERALEVFGEMAADGVGIDRATVVSVLPACAQAKDLNTGR 229

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV-IRNEVSWTAMISGCID 208
            +H LV  D      V V  AL+D+Y KC     A RVF+     ++ VSWTAMI   + 
Sbjct: 230 AVHRLV-EDKGLGDYVAVKNALIDMYGKCRSLEDARRVFDHCKHDKDVVSWTAMIGAYVL 288

Query: 209 SQNYDTGIDLFRAMQREGVK-PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
           +      I L   M   G   P  VT+  +L ACA +   ++ K  H      G   D  
Sbjct: 289 NDRAFEAISLGCQMLMSGAAWPNGVTMVYLLSACASMPSGKHAKCTHALCIRLGLKSDIA 348

Query: 268 LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
           +  AL+  Y  C + +   R+  ER   +    W++ + GY+ SG   +A++LF RM  E
Sbjct: 349 VETALIDAYARCGK-MKLMRLTLERGSWR-AETWNAALSGYTVSGREKKAIELFKRMIAE 406

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
            + P+S T+ +IL +    + L  G  +HC+++  G      I   L+++YSK G + ++
Sbjct: 407 SVRPDSATMASILPAYAESADLKEGKNIHCFLLTLGFLRSTEIATGLIDVYSKAGDLDAA 466

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHA 447
             +F  +  +D V+WTT+I+GY  HG+   A+ L+  M ESG +P+ +T+  +L AC+HA
Sbjct: 467 WALFQWLPEKDVVAWTTIIAGYSIHGHARTAILLYDRMVESGGKPNTVTIATLLYACSHA 526

Query: 448 GLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSS 507
           G++ E   +F ++     +    EHY+C VD+LG++G+IE+A +++  MP +PST +  +
Sbjct: 527 GMIDEGIKVFKDMRNVHGLMPNGEHYSCLVDMLGRAGRIEEAHRLIQDMPFEPSTSVWGA 586

Query: 508 LVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567
           L+ AC +H  +E  E+ A +L + +PEN  +Y LL  + + +  W   ++V R+M  +GL
Sbjct: 587 LLGACVLHKNVEFGEVAAKRLFQLDPENTGSYVLLGNIYAAADRWRDVQDVRRMMVERGL 646

Query: 568 SKSYGFSRIE 577
            K  G S +E
Sbjct: 647 LKEPGSSLVE 656



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 141/510 (27%), Positives = 244/510 (47%), Gaps = 31/510 (6%)

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISW-NSIINCFTQNGFYVRSLEMFREMYL--- 122
           + L  +Y    +P SA+ L  +MP    +S+ NS++  +T  G +  +L ++  M     
Sbjct: 49  HPLFMVYCACGRPSSAHNLLAQMPQPPPVSFSNSLLRSYTGLGCHREALAVYSAMRAFDH 108

Query: 123 CGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL 182
             F   A+  AG+     ++G    GR +H   +  G F    +V  AL+ +Y  C    
Sbjct: 109 LTFPFAAKACAGL-----RLG--RHGRAVHCRALAAG-FGGDTYVQNALISMYMSCGDVG 160

Query: 183 IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
            A  VF  M  R  VSW A+I+GC+ +   +  +++F  M  +GV   R T+  VL ACA
Sbjct: 161 AAEAVFGAMRNRTVVSWNAVIAGCVKNGYAERALEVFGEMAADGVGIDRATVVSVLPACA 220

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTK-VKDVVIW 301
           + +DL  G+A+H      G      +  AL+ MY +C  +L  AR +F+  K  KDVV W
Sbjct: 221 QAKDLNTGRAVHRLVEDKGLGDYVAVKNALIDMYGKC-RSLEDARRVFDHCKHDKDVVSW 279

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIE-PNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           +++I  Y  +    EA+ L  +M +     PN VT++ +LS+C       H    H   +
Sbjct: 280 TAMIGAYVLNDRAFEAISLGCQMLMSGAAWPNGVTMVYLLSACASMPSGKHAKCTHALCI 339

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
           + GL  D+++  AL++ Y++CG +          + R   +W   +SGY   G  ++A++
Sbjct: 340 RLGLKSDIAVETALIDAYARCGKMKLMRLTLERGSWR-AETWNAALSGYTVSGREKKAIE 398

Query: 421 LFLEMQESGVEPDAITVLAILSACNHAGLVKEAET-----LFNNVMKEKKIALAIEHYAC 475
           LF  M    V PD+ T+ +IL A   +  +KE +      L    ++  +IA  +     
Sbjct: 399 LFKRMIAESVRPDSATMASILPAYAESADLKEGKNIHCFLLTLGFLRSTEIATGL----- 453

Query: 476 YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EP 533
            +D+  K+G ++ A  +   +P K      +++++   IHG    A +L  +++E+  +P
Sbjct: 454 -IDVYSKAGDLDAAWALFQWLPEK-DVVAWTTIIAGYSIHGHARTAILLYDRMVESGGKP 511

Query: 534 ENAANYTLLSMVCSESGNWLGAEEVWRVMR 563
                 TLL   CS +G      +V++ MR
Sbjct: 512 NTVTIATLL-YACSHAGMIDEGIKVFKDMR 540


>gi|356566136|ref|XP_003551291.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 733

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 179/570 (31%), Positives = 306/570 (53%), Gaps = 4/570 (0%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           YE  +      +HP G   +  ++   +KACA    +  FG  LH  ++KSG      +S
Sbjct: 105 YEALILFSNMWVHP-GPQRDQFMISVALKACALG-VNICFGELLHGFSVKSGLIHSVFVS 162

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           ++LI MY K  K E   ++F++M  R+ +SW +II      G+ +  L  F EM+     
Sbjct: 163 SALIDMYMKVGKIEQGCRVFEKMMTRNVVSWTAIIAGLVHAGYNMEGLLYFSEMWRSKVG 222

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
             +   A  +   +    L  G+ IH   I  G F+ S FV   L  +Y+KC      +R
Sbjct: 223 YDSHTFAIALKASADSSLLHHGKAIHTQTIKQG-FDESSFVINTLATMYNKCGKPDYVMR 281

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           +FE+M + + VSWT +IS  +     +  ++ F+ M++  V P + T   V+ +CA L  
Sbjct: 282 LFEKMRMPDVVSWTTLISTYVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAA 341

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
            + G+ IHG+    G      ++ +++ +Y +C   L  A ++F     KD++ WS+II 
Sbjct: 342 AKWGEQIHGHVLRLGLVNALSVANSIITLYSKCG-LLKSASLVFHGITRKDIISWSTIIS 400

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
            YSQ G   EA    S MR E  +PN   L ++LS C   + L  G  VH +++  G++ 
Sbjct: 401 VYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHLLCIGIDH 460

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           +  + +A+++MYSKCGS+  + +IFN M   D +SWT +I+GY  HGY +EA+ LF ++ 
Sbjct: 461 EAMVHSAIISMYSKCGSVQEASKIFNGMKINDIISWTAMINGYAEHGYSQEAINLFEKIS 520

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
             G++PD +  + +L+ACNHAG+V      F  +    +I+ + EHY C +DLL ++G++
Sbjct: 521 SVGLKPDYVMFIGVLTACNHAGMVDLGFYYFMLMTNVYRISPSKEHYGCLIDLLCRAGRL 580

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546
            +A  ++ +MP      + S+L+ ACR+HG ++     A QL++ +P +A  +  L+ + 
Sbjct: 581 SEAEHIIRSMPFHTDDVVWSTLLRACRVHGDVDRGRWTAEQLLQLDPNSAGTHITLANIY 640

Query: 547 SESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
           +  G W  A  + ++M++KG+ K  G+S +
Sbjct: 641 AAKGRWKEAAHIRKLMKSKGVIKERGWSWV 670



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 128/437 (29%), Positives = 226/437 (51%), Gaps = 12/437 (2%)

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           NS +    K  +   A  +FD+M +RD ISW ++I  +        +L +F  M++    
Sbjct: 61  NSELKQLVKQGQLCKARYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVHPGP 120

Query: 127 LKAELLAGI-ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
            + + +  + +  C+    +  G  +H   +  G    SVFVS+AL+D+Y K        
Sbjct: 121 QRDQFMISVALKACALGVNICFGELLHGFSVKSGLIH-SVFVSSALIDMYMKVGKIEQGC 179

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
           RVFE+M+ RN VSWTA+I+G + +     G+  F  M R  V     T  I L A A+  
Sbjct: 180 RVFEKMMTRNVVSWTAIIAGLVHAGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSS 239

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
            L +GKAIH      GFD    +   L  MY +C +  +  R +FE+ ++ DVV W+++I
Sbjct: 240 LLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKPDYVMR-LFEKMRMPDVVSWTTLI 298

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
             Y Q G+   A++ F RMR   + PN  T  A++SSC   +    G  +H ++++ GL 
Sbjct: 299 STYVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGEQIHGHVLRLGLV 358

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
             +S+ N+++ +YSKCG + S+  +F+ +  +D +SW+T+IS Y   GY +EA      M
Sbjct: 359 NALSVANSIITLYSKCGLLKSASLVFHGITRKDIISWSTIISVYSQGGYAKEAFDYLSWM 418

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEH----YACYVDLLG 481
           +  G +P+   + ++LS C    L+++ + +  +++      + I+H    ++  + +  
Sbjct: 419 RREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHLL-----CIGIDHEAMVHSAIISMYS 473

Query: 482 KSGKIEDACKVVSTMPM 498
           K G +++A K+ + M +
Sbjct: 474 KCGSVQEASKIFNGMKI 490



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 6/157 (3%)

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ-ESGV 430
           N+ +    K G +  +  +F++M  RD +SWTTLI+GY       EAL LF  M    G 
Sbjct: 61  NSELKQLVKQGQLCKARYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVHPGP 120

Query: 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDAC 490
           + D   +   L AC     +   E L    +K   I  ++   +  +D+  K GKIE  C
Sbjct: 121 QRDQFMISVALKACALGVNICFGELLHGFSVKSGLIH-SVFVSSALIDMYMKVGKIEQGC 179

Query: 491 KVVSTMPMK---PSTRILSSLVSAC-RIHGRLEVAEM 523
           +V   M  +     T I++ LV A   + G L  +EM
Sbjct: 180 RVFEKMMTRNVVSWTAIIAGLVHAGYNMEGLLYFSEM 216


>gi|449438685|ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
 gi|449528041|ref|XP_004171015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 868

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 183/567 (32%), Positives = 310/567 (54%), Gaps = 4/567 (0%)

Query: 11  LHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLI 70
           L L+K E+   G+  + +   SV ++CA   +    G QLHC ALK+   +D ++  + +
Sbjct: 243 LKLFK-EMQRKGIGVSQSTYASVFRSCA-GLSASRLGTQLHCHALKTDFGSDVIVGTATL 300

Query: 71  SMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE 130
            MYAK      AY+LF  +P  +  S+N++I  + +N    ++ ++F ++    F     
Sbjct: 301 DMYAKCDNMSDAYKLFSLLPDHNLQSYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEV 360

Query: 131 LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQ 190
            L+G +S  + I     G Q+H L I   +   ++ V+ A+LD+Y KC   + A  +F++
Sbjct: 361 SLSGALSAAAVIKGHSEGLQLHGLAI-KSNLSSNICVANAILDMYGKCGALVEASGLFDE 419

Query: 191 MVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNG 250
           M IR+ VSW A+I+ C  +++    +  F AM R  ++P   T   VL ACA  R   NG
Sbjct: 420 MEIRDPVSWNAIITACEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNG 479

Query: 251 KAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQ 310
             +HG     G      + +AL+ MY +C   +  A  I  R + + +V W++II G+S 
Sbjct: 480 MEVHGRIIKSGMGLKMFVGSALVDMYSKCG-MMEEAEKIHYRLEEQTMVSWNAIISGFSL 538

Query: 311 SGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSI 370
                ++ + FS M    +EP++ T   +L +C   + +  G  +H  ++K  L  DV I
Sbjct: 539 QKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCANLATVGLGKQIHAQMIKLELLSDVYI 598

Query: 371 GNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV 430
            + L++MYSKCG++  S  +F +   RD V+W  +I G+ +HG GEEAL+LF  M    +
Sbjct: 599 TSTLVDMYSKCGNMHDSLLMFRKAPKRDSVTWNAMICGFAYHGLGEEALELFEHMLHENI 658

Query: 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDAC 490
           +P+  T +++L AC+H G  K+    F  +     +   +EHY+C VD+LG+SG++E+A 
Sbjct: 659 KPNHATFVSVLRACSHVGNAKKGLFYFQKMASIYALEPQLEHYSCMVDILGRSGQVEEAL 718

Query: 491 KVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESG 550
           +++  MP +    I  +L+S C+I G +EVAE  A  L++ +PE+++ YTLLS + +++G
Sbjct: 719 RLIQDMPFEADAIIWRTLLSICKIQGNVEVAEKAASSLLKLDPEDSSAYTLLSNIYADAG 778

Query: 551 NWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            W    ++ + MR+  L K  G S IE
Sbjct: 779 MWQQVSKIRQTMRSHNLKKEPGCSWIE 805



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 151/568 (26%), Positives = 275/568 (48%), Gaps = 38/568 (6%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRD------------- 93
           G + H   + SG      ++N LI MY K    E AY++F+EMP RD             
Sbjct: 43  GKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEMPQRDIVSWNTMVFGCAG 102

Query: 94  -------------------TISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAG 134
                               +SWNS+I+ + QNG   +S+ +F +M   G +     LA 
Sbjct: 103 AGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVFLKMRDLGVMFDHTTLAV 162

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
            + +CS + +  LG QIH + +  G F+  V   +AL+D+Y+KC+    +L VF ++  +
Sbjct: 163 SLKICSLLEDQVLGIQIHGIAVQMG-FDYDVVTGSALVDMYAKCNSLEDSLDVFSELPDK 221

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
           N +SW+A I+GC+ +     G+ LF+ MQR+G+  ++ T   V  +CA L   R G  +H
Sbjct: 222 NWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVFRSCAGLSASRLGTQLH 281

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
            +A    F  D  +  A + MY +C + +  A  +F      ++  ++++I GY+++   
Sbjct: 282 CHALKTDFGSDVIVGTATLDMYAKC-DNMSDAYKLFSLLPDHNLQSYNAMIIGYARNEQG 340

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
            +A KLF +++      + V+L   LS+       S GL +H   +K+ L+ ++ + NA+
Sbjct: 341 FQAFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQLHGLAIKSNLSSNICVANAI 400

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           ++MY KCG++  +  +F+EM  RD VSW  +I+    +    + L  F  M  S +EPD 
Sbjct: 401 LDMYGKCGALVEASGLFDEMEIRDPVSWNAIITACEQNESEGKTLSHFGAMLRSKMEPDE 460

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS 494
            T  ++L AC           +   ++K   + L +   +  VD+  K G +E+A K+  
Sbjct: 461 FTYGSVLKACAGQRAFSNGMEVHGRIIK-SGMGLKMFVGSALVDMYSKCGMMEEAEKIHY 519

Query: 495 TMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE--AEPENAANYTLLSMVCSESGNW 552
            +  +      ++++S   +  + E ++     ++E   EP+N    T+L    + +   
Sbjct: 520 RLEEQTMVS-WNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCANLATVG 578

Query: 553 LGAEEVWRVMRAKGLSKSYGFSRIENEY 580
           LG +   ++++ + LS  Y  S + + Y
Sbjct: 579 LGKQIHAQMIKLELLSDVYITSTLVDMY 606



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 135/299 (45%), Gaps = 34/299 (11%)

Query: 231 RVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIF 290
           R T + +   C+  R L+ GK  H +    GF     ++  L+ MY +C  AL  A  +F
Sbjct: 24  RKTFSHIFQECSNRRALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCC-ALEYAYKVF 82

Query: 291 ERTKVK--------------------------------DVVIWSSIIRGYSQSGDLSEAM 318
           E    +                                DVV W+S+I GY Q+GD+ +++
Sbjct: 83  EEMPQRDIVSWNTMVFGCAGAGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSI 142

Query: 319 KLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMY 378
            +F +MR   +  +  TL   L  C+       G+ +H   ++ G ++DV  G+AL++MY
Sbjct: 143 AVFLKMRDLGVMFDHTTLAVSLKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMY 202

Query: 379 SKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
           +KC S+  S  +F+E+  ++++SW+  I+G   +      L+LF EMQ  G+     T  
Sbjct: 203 AKCNSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYA 262

Query: 439 AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
           ++  +C      +    L  + +K    +  I   A  +D+  K   + DA K+ S +P
Sbjct: 263 SVFRSCAGLSASRLGTQLHCHALKTDFGSDVIVGTAT-LDMYAKCDNMSDAYKLFSLLP 320



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 85/200 (42%), Gaps = 39/200 (19%)

Query: 335 TLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEM 394
           T   I   C+ +  L  G   H +++ +G    V + N L+ MY KC ++  ++++F EM
Sbjct: 26  TFSHIFQECSNRRALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEM 85

Query: 395 AARDFVSWTT--------------------------------LISGYGFHGYGEEALQLF 422
             RD VSW T                                LISGY  +G  ++++ +F
Sbjct: 86  PQRDIVSWNTMVFGCAGAGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVF 145

Query: 423 LEMQESGVEPDAITVLAILSACNHAGLVKEAETL---FNNVMKEKKIALAIEHYACYVDL 479
           L+M++ GV  D  T+   L  C+    + E + L    + +  +      +   +  VD+
Sbjct: 146 LKMRDLGVMFDHTTLAVSLKICS----LLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDM 201

Query: 480 LGKSGKIEDACKVVSTMPMK 499
             K   +ED+  V S +P K
Sbjct: 202 YAKCNSLEDSLDVFSELPDK 221


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 1047

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 172/531 (32%), Positives = 299/531 (56%), Gaps = 2/531 (0%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G Q H  A+K+G  +D ++  +L+ +Y K S  ++A++ F      + + WN ++  +  
Sbjct: 391 GKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGL 450

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
                 S ++F +M + G          I+  CS +  ++LG QIH  V+  G F+ +V+
Sbjct: 451 LDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTG-FQFNVY 509

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           VS+ L+D+Y+K      AL++F ++  ++ VSWTAMI+G    + +   ++LF+ MQ +G
Sbjct: 510 VSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQG 569

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           +    +     + ACA ++ L  G+ IH  A   G+  D  +  AL+ +Y  C + +  A
Sbjct: 570 IHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGK-VRDA 628

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
              F++   KD + W+S+I G++QSG   EA+ LFS+M     E NS T    +S+    
Sbjct: 629 YFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANV 688

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
           + +  G  +H  I+K G + +  + N L+ +Y+KCG+I  + + F EM  ++ +SW  ++
Sbjct: 689 ANVKLGKQIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAML 748

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
           +GY  HG+G +AL LF +M++ GV P+ +T + +LSAC+H GLV E    F ++ +   +
Sbjct: 749 TGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGL 808

Query: 467 ALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAH 526
               EHYAC VDLLG+SG +  A + V  MP++P   +  +L+SAC +H  +++ E  A 
Sbjct: 809 VPKPEHYACVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRTLLSACIVHKNIDIGEFAAS 868

Query: 527 QLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            L+E EP+++A Y LLS + + +G W   +   ++M+ +G+ K  G S IE
Sbjct: 869 HLLELEPKDSATYVLLSNMYAVTGKWGCRDRTRQMMKDRGVKKEPGRSWIE 919



 Score =  254 bits (649), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 154/497 (30%), Positives = 260/497 (52%), Gaps = 32/497 (6%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           ++H SG+Y    I  SV+ AC   + ++  G QLH   LK G   +  + N+L+++Y++ 
Sbjct: 261 QMHTSGVYPTPYIFSSVLSACTKVEFYK-VGEQLHGLVLKQGFSLETYVCNALVTLYSRL 319

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
                A Q+F+ M  RD +S+NS+I+  +Q G+  ++LE+F++M L         +A ++
Sbjct: 320 GNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLL 379

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
           S CS +G L +G+Q H+  I  G     + +  ALLDLY KC     A   F      N 
Sbjct: 380 SACSSVGALLVGKQFHSYAIKAG-MSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENV 438

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           V W  M+       N +    +F  MQ EG++P + T   +L  C+ LR +  G+ IH  
Sbjct: 439 VLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQ 498

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
               GF F+ ++S+ L+ MY +  +  H  + IF R K KDVV W+++I GY+Q    +E
Sbjct: 499 VLKTGFQFNVYVSSVLIDMYAKLGKLDHALK-IFRRLKEKDVVSWTAMIAGYAQHEKFAE 557

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
           A+ LF  M+ + I  +++   + +S+C     L+ G  +H     +G + D+S+GNAL++
Sbjct: 558 ALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVS 617

Query: 377 MYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAIT 436
           +Y++CG +  ++  F+++ ++D +SW +LISG+   G+ EEAL LF +M ++G E ++ T
Sbjct: 618 LYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFT 677

Query: 437 V-----------LAILSACNHAGLVK---EAETLFNNVMKEKKIALAIEHYACYVDLLGK 482
                          L    HA ++K   ++ET  +NV+               + L  K
Sbjct: 678 FGPAVSAAANVANVKLGKQIHAMIIKTGHDSETEVSNVL---------------ITLYAK 722

Query: 483 SGKIEDACKVVSTMPMK 499
            G I+DA +    MP K
Sbjct: 723 CGNIDDAERQFFEMPEK 739



 Score =  245 bits (625), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 151/507 (29%), Positives = 266/507 (52%), Gaps = 14/507 (2%)

Query: 33  VIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYR 92
           V++ C       H   ++H   +  G +    + N LI +Y K     SA ++FD +  R
Sbjct: 175 VLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKR 234

Query: 93  DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIH 152
           D++SW ++++  +Q+G    ++ +F +M+  G      + + ++S C+++   ++G Q+H
Sbjct: 235 DSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLH 294

Query: 153 ALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNY 212
            LV+  G F L  +V  AL+ LYS+  +++ A +VF  M+ R+EVS+ ++ISG       
Sbjct: 295 GLVLKQG-FSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYS 353

Query: 213 DTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAAL 272
           D  ++LF+ M  + +KP  VT+  +L AC+ +  L  GK  H YA   G   D  L  AL
Sbjct: 354 DKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGAL 413

Query: 273 MHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPN 332
           + +Y +C++ +  A   F  T+ ++VV+W+ ++  Y    +L+E+ K+F++M++E IEPN
Sbjct: 414 LDLYVKCSD-IKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPN 472

Query: 333 SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFN 392
             T  +IL +C+    +  G  +H  ++K G  F+V + + L++MY+K G +  + +IF 
Sbjct: 473 QFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFR 532

Query: 393 EMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN-----HA 447
            +  +D VSWT +I+GY  H    EAL LF EMQ+ G+  D I   + +SAC      + 
Sbjct: 533 RLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQ 592

Query: 448 GLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSS 507
           G    A+   +    +  +  A+      V L  + GK+ DA      +  K +    +S
Sbjct: 593 GQQIHAQACVSGYSDDLSVGNAL------VSLYARCGKVRDAYFAFDKIFSKDNIS-WNS 645

Query: 508 LVSACRIHGRLEVAEMLAHQLIEAEPE 534
           L+S     G  E A  L  Q+ +A  E
Sbjct: 646 LISGFAQSGHCEEALSLFSQMSKAGQE 672



 Score =  218 bits (556), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 139/455 (30%), Positives = 227/455 (49%), Gaps = 6/455 (1%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G +LH   LK G  A+ V+   L+ +Y  F   + A  +FDEMP R    WN +++ F  
Sbjct: 87  GWKLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVA 146

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELG--RQIHALVIVDGSFELS 164
                R L +FR M            AG++  C   G++      +IHA  I  G +E S
Sbjct: 147 GKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGG-GDVPFHCVEKIHARTITHG-YENS 204

Query: 165 VFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR 224
           +FV   L+DLY K      A +VF+ +  R+ VSW AM+SG   S   +  + LF  M  
Sbjct: 205 LFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHT 264

Query: 225 EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
            GV PT    + VL AC ++   + G+ +HG     GF  + ++  AL+ +Y      + 
Sbjct: 265 SGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFI- 323

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
           PA  +F     +D V ++S+I G SQ G   +A++LF +M L+ ++P+ VT+ ++LS+C+
Sbjct: 324 PAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACS 383

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
               L  G   H Y +KAG++ D+ +  AL+++Y KC  I ++H+ F      + V W  
Sbjct: 384 SVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNV 443

Query: 405 LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK 464
           ++  YG      E+ ++F +MQ  G+EP+  T  +IL  C+    V   E +   V+K  
Sbjct: 444 MLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLK-T 502

Query: 465 KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
                +   +  +D+  K GK++ A K+   +  K
Sbjct: 503 GFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEK 537



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 157/311 (50%), Gaps = 3/311 (0%)

Query: 139 CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
           C   G    G ++H  ++  G F   V +   L+DLY        A+ VF++M +R    
Sbjct: 78  CLSSGWFSDGWKLHGKILKMG-FCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSC 136

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR-DLRNGKAIHGYA 257
           W  ++   +  +     + LFR M +E VKP   T   VL  C          + IH   
Sbjct: 137 WNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHART 196

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
              G++    +   L+ +Y +    L+ A+ +F+  + +D V W +++ G SQSG   EA
Sbjct: 197 ITHGYENSLFVCNPLIDLYFK-NGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEA 255

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
           + LF +M    + P      ++LS+CT+  F   G  +H  ++K G + +  + NAL+ +
Sbjct: 256 VLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTL 315

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           YS+ G+   + Q+FN M  RD VS+ +LISG    GY ++AL+LF +M    ++PD +TV
Sbjct: 316 YSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTV 375

Query: 438 LAILSACNHAG 448
            ++LSAC+  G
Sbjct: 376 ASLLSACSSVG 386



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 161/374 (43%), Gaps = 11/374 (2%)

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
           TA+     + +    GI+    M+  GV+    T   +L  C       +G  +HG    
Sbjct: 37  TALSYAYSNDEGEANGINFLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILK 96

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
            GF  +  L   LM +Y    + L  A  +F+   V+ +  W+ ++  +         + 
Sbjct: 97  MGFCAEVVLCERLMDLYIAFGD-LDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLG 155

Query: 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGL-GVHCYIMKAGLNFDVSIGNALMNMY 378
           LF RM  E+++P+  T   +L  C       H +  +H   +  G    + + N L+++Y
Sbjct: 156 LFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLY 215

Query: 379 SKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
            K G + S+ ++F+ +  RD VSW  ++SG    G  EEA+ LF +M  SGV P      
Sbjct: 216 FKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFS 275

Query: 439 AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC--YVDLLGKSGKIEDACKVVSTM 496
           ++LSAC      K  E L   V+K+     ++E Y C   V L  + G    A +V + M
Sbjct: 276 SVLSACTKVEFYKVGEQLHGLVLKQ---GFSLETYVCNALVTLYSRLGNFIPAEQVFNAM 332

Query: 497 PMKPSTRILSSLVSACRIHGRLEVA-EMLAHQLIEA-EPENAANYTLLSMVCSESGNWLG 554
             +      +SL+S     G  + A E+     ++  +P+     +LLS  CS  G  L 
Sbjct: 333 LQRDEVS-YNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLS-ACSSVGALLV 390

Query: 555 AEEVWRVMRAKGLS 568
            ++        G+S
Sbjct: 391 GKQFHSYAIKAGMS 404


>gi|449502685|ref|XP_004161713.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g47840-like [Cucumis
           sativus]
          Length = 712

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 175/569 (30%), Positives = 304/569 (53%), Gaps = 3/569 (0%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           + L L+ +    S L  +  +L   +K C     +  +G  LH  ++K G      + ++
Sbjct: 98  EALRLFSKMRLQSELRIDPFLLSLGLKTCGLGLNYL-YGTNLHGFSVKXGLVNSVFVGSA 156

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           L+ MY K  +   + ++FDEMP R+ ++W ++I    + G+    L  F  M        
Sbjct: 157 LLDMYMKIGEIGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYD 216

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
           +   A  +   +  G L  GR IH   +  G F+ + FV+ +L  +Y+KC      L  F
Sbjct: 217 SYAYAIALKASADSGALNHGRSIHTQTLKKG-FDENSFVANSLTTMYNKCGKLDYGLHTF 275

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
            +M   + VSWT +++  I     D G+  F+ M+   V P   T + V+  CA    L+
Sbjct: 276 RKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLK 335

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
            G+ +H +  C GF     ++ ++M +Y +C E L     +F   K +D++ WS+II  Y
Sbjct: 336 WGEQLHAHVLCVGFVNALSVANSIMTLYSKCGE-LASVSKVFCSMKFRDIITWSTIIAAY 394

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
           SQ G   EA +  SRMR E  +PN   L ++LS C   + L  G  +H +++  GL    
Sbjct: 395 SQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTS 454

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
            + +AL+ MY+KCGSI  + +IF +    D +SWT +ISGY  HG+ +EA++LF  +Q+ 
Sbjct: 455 MVCSALIIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIELFENIQKV 514

Query: 429 GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIED 488
           G+ PD++T + +L+AC+HAG+V      FN++ K+  I  + EHY C +DLL ++G++ D
Sbjct: 515 GLRPDSVTFIGVLTACSHAGMVDLGFYYFNSMSKDYHITPSKEHYGCMIDLLCRAGRLHD 574

Query: 489 ACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSE 548
           A  ++ +MP++    + S+L+ ACRIHG ++  +  A ++++ +P  A  +  L+ + + 
Sbjct: 575 AETLIRSMPIQWDDVVWSTLLRACRIHGDVDCGQRAAAEVLKLDPNCAGTHITLANIFAA 634

Query: 549 SGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            G W  A  +  +M++KG+ K  G+S ++
Sbjct: 635 KGKWKEAANIRMLMKSKGVVKEPGWSSVK 663



 Score =  211 bits (537), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 140/497 (28%), Positives = 244/497 (49%), Gaps = 18/497 (3%)

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D   +N+ + +  K +  + A  LFD++P RD +SW +II+ +  +     +L +F +M 
Sbjct: 48  DLAEANNQLKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMR 107

Query: 122 L-CGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
           L     +   LL+  +  C        G  +H   +  G    SVFV +ALLD+Y K   
Sbjct: 108 LQSELRIDPFLLSLGLKTCGLGLNYLYGTNLHGFSVKXGLVN-SVFVGSALLDMYMKIGE 166

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
              + +VF++M  RN V+WTA+I+G + +   + G+  F  M R  V+       I L A
Sbjct: 167 IGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKA 226

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTE---ALHPARIIFERTKVKD 297
            A+   L +G++IH      GFD +  ++ +L  MY +C +    LH     F + +  D
Sbjct: 227 SADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHT----FRKMRTLD 282

Query: 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHC 357
           VV W++I+  Y Q G     ++ F RMR   + PN  T  A++S C   + L  G  +H 
Sbjct: 283 VVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHA 342

Query: 358 YIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEE 417
           +++  G    +S+ N++M +YSKCG + S  ++F  M  RD ++W+T+I+ Y   GYGEE
Sbjct: 343 HVLCVGFVNALSVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEE 402

Query: 418 ALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC-- 475
           A +    M+  G +P+   + ++LS C    ++++ + L  +V+    + L      C  
Sbjct: 403 AFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVL---SVGLEQTSMVCSA 459

Query: 476 YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGR-LEVAEMLAH-QLIEAEP 533
            + +  K G I +A K+      K      ++++S    HG   E  E+  + Q +   P
Sbjct: 460 LIIMYAKCGSIAEASKIFMD-SWKDDIISWTAMISGYAEHGHSQEAIELFENIQKVGLRP 518

Query: 534 ENAANYTLLSMVCSESG 550
           ++     +L+  CS +G
Sbjct: 519 DSVTFIGVLT-ACSHAG 534


>gi|357474955|ref|XP_003607763.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355508818|gb|AES89960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 871

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 182/540 (33%), Positives = 303/540 (56%), Gaps = 19/540 (3%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           +LHC  LKS + AD  +  SL+  Y+K  K   A ++FDE+P R  +SW S+I  + QN 
Sbjct: 156 KLHCNILKSNA-ADSFVLTSLVDAYSKCGKLRDARKVFDEIPDRSVVSWTSMIVAYVQNE 214

Query: 109 FYVRSLEMF---REMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSV 165
                L +F   RE +L G V     +  +++ C+++G L  G+ +H  VI +G  E++ 
Sbjct: 215 CAEEGLMLFNRMREGFLDGNVFT---VGSLVTACTKLGCLHQGKWVHGYVIKNG-IEINS 270

Query: 166 FVSTALLDLYSKCHHWLIALRVFEQMVIR------NEVSWTAMISGCIDSQNYDTGIDLF 219
           +++T+LL++Y KC     A  VF++  +       + V WTAMI G          ++LF
Sbjct: 271 YLATSLLNMYVKCGDIGDARSVFDEFSVSTCGGGDDLVFWTAMIVGYTQRGYPQAALELF 330

Query: 220 RAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCEC 279
              +   + P  VTL  +L ACA+L ++  GK +H      G D D  L  +L+ MY +C
Sbjct: 331 TDKKWYRILPNSVTLASLLSACAQLENIVMGKLLHVLVVKYGLD-DTSLRNSLVDMYAKC 389

Query: 280 TEALHP-ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLA 338
              L P A  +F  T  KDVV W+S+I GY+QSG   EA+ LF+RMR+E   P++VT++ 
Sbjct: 390 --GLIPDAHYVFATTVDKDVVSWNSVISGYAQSGSAYEALDLFNRMRMESFLPDAVTVVG 447

Query: 339 ILSSCTRQSFLSHGLGVHCYIMKAGL-NFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR 397
           +LS+C        GL +H + +K GL +  + +G AL+N Y+KCG  TS+  +F+ M  +
Sbjct: 448 VLSACASVGAHQIGLSLHGFALKYGLVSSSIYVGTALLNFYAKCGDATSARMVFDGMGEK 507

Query: 398 DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLF 457
           + V+W  +I G G  G G  +L LF +M +  + P+ +    +L+AC+H+G+V+E   +F
Sbjct: 508 NAVTWAAMIGGCGMQGDGVGSLALFRDMLKEELVPNEVVFTTLLAACSHSGMVEEGLMIF 567

Query: 458 NNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGR 517
           + + KE     +++HYAC VDLL ++G +++A   +  MP++P   +  + +  C +H  
Sbjct: 568 DFMCKELNFVPSMKHYACMVDLLARAGNLQEALDFIDKMPVQPGVGVFGAFLHGCGLHSN 627

Query: 518 LEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +  E+   +++E  P+ A  Y L+S + +  G W   +EV  +++ +GL+K  G S +E
Sbjct: 628 FDFGEVAIRRMLELHPDQACYYVLISNLYASDGRWGMVKEVREMIKQRGLNKVPGVSLVE 687



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 159/541 (29%), Positives = 270/541 (49%), Gaps = 42/541 (7%)

Query: 30  LPSVI---KACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLF 86
           LP  I   + C +  T +     LH + + SG   D     +LIS+YA F     A  LF
Sbjct: 40  LPPTIHLSRICKHPTTVK----TLHASLIISGHPPD----TTLISLYASFGFLRHARTLF 91

Query: 87  DEMP------YRDTISWNSIINCFTQ-NGFY---VRSLEMFREMYLCGFVLKAELLAGII 136
             +P      ++  I W+ + +  +    FY     +L  F ++ +   +LK        
Sbjct: 92  HRLPSPTHHSFKLIIRWHFLNDVHSHVVSFYNLARTTLGSFNDLVVFSILLKT------- 144

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
              SQ+ ++ L  ++H  ++   + +   FV T+L+D YSKC     A +VF+++  R+ 
Sbjct: 145 --ASQLRDIVLTTKLHCNILKSNAAD--SFVLTSLVDAYSKCGKLRDARKVFDEIPDRSV 200

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           VSWT+MI   + ++  + G+ LF  M+   +     T+  ++ AC +L  L  GK +HGY
Sbjct: 201 VSWTSMIVAYVQNECAEEGLMLFNRMREGFLDGNVFTVGSLVTACTKLGCLHQGKWVHGY 260

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV------KDVVIWSSIIRGYSQ 310
               G + + +L+ +L++MY +C + +  AR +F+   V       D+V W+++I GY+Q
Sbjct: 261 VIKNGIEINSYLATSLLNMYVKCGD-IGDARSVFDEFSVSTCGGGDDLVFWTAMIVGYTQ 319

Query: 311 SGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSI 370
            G    A++LF+  +  RI PNSVTL ++LS+C +   +  G  +H  ++K GL+ D S+
Sbjct: 320 RGYPQAALELFTDKKWYRILPNSVTLASLLSACAQLENIVMGKLLHVLVVKYGLD-DTSL 378

Query: 371 GNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV 430
            N+L++MY+KCG I  +H +F     +D VSW ++ISGY   G   EAL LF  M+    
Sbjct: 379 RNSLVDMYAKCGLIPDAHYVFATTVDKDVVSWNSVISGYAQSGSAYEALDLFNRMRMESF 438

Query: 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDAC 490
            PDA+TV+ +LSAC   G  +   +L    +K   ++ +I      ++   K G    A 
Sbjct: 439 LPDAVTVVGVLSACASVGAHQIGLSLHGFALKYGLVSSSIYVGTALLNFYAKCGDATSAR 498

Query: 491 KVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE-PENAANYTLLSMVCSES 549
            V   M  K +    ++++  C + G    +  L   +++ E   N   +T L   CS S
Sbjct: 499 MVFDGMGEKNAV-TWAAMIGGCGMQGDGVGSLALFRDMLKEELVPNEVVFTTLLAACSHS 557

Query: 550 G 550
           G
Sbjct: 558 G 558



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 124/466 (26%), Positives = 230/466 (49%), Gaps = 28/466 (6%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E+ L L+ + +    L  N   + S++ AC       H G  +H   +K+G + +  ++ 
Sbjct: 217 EEGLMLFNR-MREGFLDGNVFTVGSLVTACTKLGC-LHQGKWVHGYVIKNGIEINSYLAT 274

Query: 68  SLISMYAKFSKPESAYQLFDEMPYR------DTISWNSIINCFTQNGFYVRSLEMFREMY 121
           SL++MY K      A  +FDE          D + W ++I  +TQ G+   +LE+F +  
Sbjct: 275 SLLNMYVKCGDIGDARSVFDEFSVSTCGGGDDLVFWTAMIVGYTQRGYPQAALELFTDKK 334

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
               +  +  LA ++S C+Q+  + +G+ +H LV+  G  + S  +  +L+D+Y+KC   
Sbjct: 335 WYRILPNSVTLASLLSACAQLENIVMGKLLHVLVVKYGLDDTS--LRNSLVDMYAKCGLI 392

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             A  VF   V ++ VSW ++ISG   S +    +DLF  M+ E   P  VT+  VL AC
Sbjct: 393 PDAHYVFATTVDKDVVSWNSVISGYAQSGSAYEALDLFNRMRMESFLPDAVTVVGVLSAC 452

Query: 242 AELRDLRNGKAIHGYAYCCGF-DFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
           A +   + G ++HG+A   G      ++  AL++ Y +C +A   AR++F+    K+ V 
Sbjct: 453 ASVGAHQIGLSLHGFALKYGLVSSSIYVGTALLNFYAKCGDAT-SARMVFDGMGEKNAVT 511

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           W+++I G    GD   ++ LF  M  E + PN V    +L++C+    +  GL +  ++ 
Sbjct: 512 WAAMIGGCGMQGDGVGSLALFRDMLKEELVPNEVVFTTLLAACSHSGMVEEGLMIFDFMC 571

Query: 361 KAGLNFDVSIGN--ALMNMYSKCGSITSSHQIFNEMAARDFVS-WTTLISGYGFHG---Y 414
           K  LNF  S+ +   ++++ ++ G++  +    ++M  +  V  +   + G G H    +
Sbjct: 572 KE-LNFVPSMKHYACMVDLLARAGNLQEALDFIDKMPVQPGVGVFGAFLHGCGLHSNFDF 630

Query: 415 GEEALQLFLEMQESGVEPDA----ITVLAILSACNHAGLVKEAETL 456
           GE A++  LE+      PD     + +  + ++    G+VKE   +
Sbjct: 631 GEVAIRRMLELH-----PDQACYYVLISNLYASDGRWGMVKEVREM 671


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 183/565 (32%), Positives = 317/565 (56%), Gaps = 9/565 (1%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGS-DADPVISNSLISMYAKFSKP 79
           +G Y N     +  +AC+ A+     G  +    +K+G   +D  +   LI M+ K    
Sbjct: 162 NGYYPNEYCFAAATRACSTAE-FVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGD 220

Query: 80  -ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISL 138
             SA+++F++MP R+ ++W  +I    Q G+   ++++F +M   G+      L+G+IS 
Sbjct: 221 LVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISA 280

Query: 139 CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH---HWLIALRVFEQMVIRN 195
           C+ +  L LG+Q+H+  I  G   L   V   L+++Y+KC        A ++F+Q++  N
Sbjct: 281 CANMELLLLGQQLHSQAIRHG-LTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHN 339

Query: 196 EVSWTAMISGCIDSQNYDT-GIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
             SWTAMI+G +    YD   +DLFR M    V P   T +  L ACA L  LR G+ + 
Sbjct: 340 VFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVF 399

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
            +A   GF   + ++ +L+ MY   +  +  AR  F+    K+++ ++++I  Y+++ + 
Sbjct: 400 THAVKLGFSSVNCVANSLISMYAR-SGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNS 458

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
            EA++LF+ +  + +  ++ T  ++LS       +  G  +H  ++K+GL  + S+ NAL
Sbjct: 459 EEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNAL 518

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           ++MYS+CG+I S+ Q+F +M  R+ +SWT++I+G+  HG+  +AL+LF +M E GV P+ 
Sbjct: 519 ISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNE 578

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS 494
           +T +A+LSAC+H GLV E    F ++  E  +   +EHYAC VD+LG+SG + +A + ++
Sbjct: 579 VTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFIN 638

Query: 495 TMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLG 554
           +MP K    +  + + ACR+HG LE+ +  A  +IE EP + A Y LLS + +    W  
Sbjct: 639 SMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASISKWDE 698

Query: 555 AEEVWRVMRAKGLSKSYGFSRIENE 579
              + + M+ K L K  G S +E E
Sbjct: 699 VSNIRKAMKEKXLIKEAGCSWVEVE 723



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 161/548 (29%), Positives = 261/548 (47%), Gaps = 20/548 (3%)

Query: 12  HLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLIS 71
           H+  Q  HP  L + +  L   I+  ++       G  +H    +S    D V  NSLIS
Sbjct: 56  HMVHQGSHPD-LQTYSLFLKKCIRTRSF-----DIGTLVHEKLTQSDLQLDSVTLNSLIS 109

Query: 72  MYAKFSKPESAYQLFDEM-PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE 130
           +Y+K  + E A  +F  M   RD ISW+++++CF  N    R+L  F +M   G+     
Sbjct: 110 LYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEY 169

Query: 131 LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI-ALRVFE 189
             A     CS    + +G  I   VI  G  +  V V   L+D++ K    L+ A +VFE
Sbjct: 170 CFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFE 229

Query: 190 QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
           +M  RN V+WT MI+  +        IDLF  M   G +P R TL+ V+ ACA +  L  
Sbjct: 230 KMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLL 289

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECT--EALHPARIIFERTKVKDVVIWSSIIRG 307
           G+ +H  A   G   D  +   L++MY +C+   ++  AR IF++    +V  W+++I G
Sbjct: 290 GQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITG 349

Query: 308 YSQSGDLS-EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           Y Q G    EA+ LF  M L  + PN  T  + L +C   + L  G  V  + +K G + 
Sbjct: 350 YVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSS 409

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
              + N+L++MY++ G I  + + F+ +  ++ +S+ T+I  Y  +   EEAL+LF E++
Sbjct: 410 VNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIE 469

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC--YVDLLGKSG 484
           + G+   A T  ++LS     G + + E +   V+K     L +    C   + +  + G
Sbjct: 470 DQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKS---GLKLNQSVCNALISMYSRCG 526

Query: 485 KIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE--AEPENAANYTLL 542
            IE A +V   M  +      +S+++    HG    A  L H+++E    P N   Y  +
Sbjct: 527 NIESAFQVFEDMEDRNVIS-WTSIITGFAKHGFATQALELFHKMLEEGVRP-NEVTYIAV 584

Query: 543 SMVCSESG 550
              CS  G
Sbjct: 585 LSACSHVG 592



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 89/192 (46%), Gaps = 2/192 (1%)

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
            +G L +A+     M  +   P+  T    L  C R      G  VH  + ++ L  D  
Sbjct: 43  NNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSV 102

Query: 370 IGNALMNMYSKCGSITSSHQIFNEM-AARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
             N+L+++YSKCG    +  IF  M ++RD +SW+ ++S +  +  G  AL  F++M E+
Sbjct: 103 TLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIEN 162

Query: 429 GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS-GKIE 487
           G  P+     A   AC+ A  V   +++F  V+K   +   +      +D+  K  G + 
Sbjct: 163 GYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLV 222

Query: 488 DACKVVSTMPMK 499
            A KV   MP +
Sbjct: 223 SAFKVFEKMPER 234


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 179/549 (32%), Positives = 312/549 (56%), Gaps = 8/549 (1%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEM 89
            P ++KAC         G ++HC   K G + D  ++ SL+ +Y+++   + A+++F +M
Sbjct: 127 FPPILKACVSLVD----GKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDM 182

Query: 90  PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGR 149
           P +D  SWN++I+ F QNG    +L +   M   G  +    +A I+ +C+Q  ++  G 
Sbjct: 183 PVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGV 242

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
            IH  V+  G  +  VFVS AL+++YSK      A  VF+QM +R+ VSW ++I+    +
Sbjct: 243 LIHLHVLKHG-LDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQN 301

Query: 210 QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGF-DFDHHL 268
            +  T +  F+ MQ  G++P  +T+  +    ++L D R  ++I G+     + D D  +
Sbjct: 302 NDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVI 361

Query: 269 SAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER 328
             AL++MY +    ++ A  +F++   KD + W++++ GY+Q+G  SEA+  ++ M   R
Sbjct: 362 GNALVNMYAKLG-YMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECR 420

Query: 329 IE-PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
              PN  T ++I+ + +    L  G+ +H  ++K  L  DV +   L+++Y KCG +  +
Sbjct: 421 DTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDA 480

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHA 447
             +F E+     V W  +I+  G HG GEEALQLF +M    V+ D IT +++LSAC+H+
Sbjct: 481 MSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHS 540

Query: 448 GLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSS 507
           GLV E +  F+ + KE  I  +++HY C VDLLG++G +E A ++V  MP++P   I  +
Sbjct: 541 GLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGA 600

Query: 508 LVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567
           L+SAC+I+G  E+  + + +L+E + EN   Y LLS + + +  W G  +V  + R +GL
Sbjct: 601 LLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGL 660

Query: 568 SKSYGFSRI 576
            K+ G+S +
Sbjct: 661 RKTPGWSSV 669



 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 166/539 (30%), Positives = 282/539 (52%), Gaps = 33/539 (6%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           +LH   L  G   + V+S  LI++Y        +   FD +  ++  SWNSII+ + + G
Sbjct: 40  KLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFG 99

Query: 109 FYVRSLEMFREMY-LCG-------FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGS 160
            Y  ++    +++ +CG       F     +L   +SL         G+++H  V   G 
Sbjct: 100 KYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD-------GKKVHCCVFKMG- 151

Query: 161 FELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFR 220
           FE  VFV+ +L+ LYS+     +A +VF  M +++  SW AMISG   + N    + +  
Sbjct: 152 FEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLN 211

Query: 221 AMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECT 280
            M+ EGVK   +T+  +L  CA+  D+ NG  IH +    G D D  +S AL++MY +  
Sbjct: 212 RMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFG 271

Query: 281 EALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPN---SVTLL 337
             L  A+++F++ +V+D+V W+SII  Y Q+ D S A++ F  M+L  I P+    V+L 
Sbjct: 272 R-LQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLT 330

Query: 338 AILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR 397
           +I S  + Q      LG    I +  L+ DV IGNAL+NMY+K G +  +H +F+++  +
Sbjct: 331 SIFSQLSDQRISRSILGF--VIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRK 388

Query: 398 DFVSWTTLISGYGFHGYGEEALQLFLEMQE-SGVEPDAITVLAILSACNHAGLVKEAETL 456
           D +SW TL++GY  +G   EA+  +  M+E     P+  T ++I+ A +H G +++   +
Sbjct: 389 DTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKI 448

Query: 457 FNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG 516
              ++K   + L +    C +DL GK G++EDA  +   +P   S    ++++++  IHG
Sbjct: 449 HAKLIKN-SLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVP-WNAIIASLGIHG 506

Query: 517 RLEVAEMLAHQLIEAEPENAANYTLLSMV--CSESGNWLGAEEVWRVMRAKGLSKSYGF 573
           R E A  L   ++ AE   A + T +S++  CS SG     ++ + +M+     K YG 
Sbjct: 507 RGEEALQLFKDML-AERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQ-----KEYGI 559


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 178/533 (33%), Positives = 300/533 (56%), Gaps = 8/533 (1%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G+Q+H   +K G + + ++ NSLISM +K      A  +FD M  +D++SWNS+I     
Sbjct: 222 GMQIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVI 281

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           NG  + + E F  M L G        A +I  C+ + EL L R +H   +  G    +  
Sbjct: 282 NGQDLEAFETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSG-LSTNQN 340

Query: 167 VSTALLDLYSKCHHWLIALRVFEQM-VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
           V TAL+   +KC     A  +F  M  +++ VSWTAMISG + + + D  ++LF  M+RE
Sbjct: 341 VLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRRE 400

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
           GVKP   T + +L     ++       IH       ++    +  AL+  + +    +  
Sbjct: 401 GVKPNHFTYSTIL----TVQHAVFISEIHAEVIKTNYEKSSSVGTALLDAFVKIGN-ISD 455

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           A  +FE  + KDV+ WS+++ GY+Q+G+  EA K+F ++  E I+PN  T  +I+++CT 
Sbjct: 456 AVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTA 515

Query: 346 QSF-LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
            +  +  G   H Y +K  LN  + + ++L+ +Y+K G+I S+H+IF     RD VSW +
Sbjct: 516 PTASVEQGKQFHAYAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNS 575

Query: 405 LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK 464
           +ISGY  HG  ++AL++F EMQ+  +E DAIT + ++SAC HAGLV + +  FN ++ + 
Sbjct: 576 MISGYAQHGQAKKALEVFEEMQKRNLEVDAITFIGVISACAHAGLVGKGQNYFNIMINDH 635

Query: 465 KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEML 524
            I   +EHY+C +DL  ++G +  A  +++ MP  P+  +   +++A R+H  +E+ ++ 
Sbjct: 636 HINPTMEHYSCMIDLYSRAGMLGKAMDIINGMPFPPAATVWRIVLAASRVHRNIELGKLA 695

Query: 525 AHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           A ++I  EP+++A Y LLS + + +GNW     V ++M  + + K  G+S IE
Sbjct: 696 AEKIISLEPQHSAAYVLLSNIYAAAGNWHEKVNVRKLMDKRRVKKEPGYSWIE 748



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 154/530 (29%), Positives = 267/530 (50%), Gaps = 14/530 (2%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           ++ LHL+   L+ SGL  ++  +  V+  CA    +   G Q+HC  +K G      + N
Sbjct: 84  QEALHLFV-SLYRSGLSPDSYTMSCVLSVCA-GSFNGTVGEQVHCQCVKCGLVHHLSVGN 141

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           SL+ MY K        ++FDEM  RD +SWNS++  ++ N F  +  E+F  M + G+  
Sbjct: 142 SLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRP 201

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
               ++ +I+  +  G + +G QIHALV+  G FE    V  +L+ + SK      A  V
Sbjct: 202 DYYTVSTVIAALANQGAVAIGMQIHALVVKLG-FETERLVCNSLISMLSKSGMLRDARVV 260

Query: 188 FEQMVIRNEVSWTAMISG-CIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           F+ M  ++ VSW +MI+G  I+ Q+ +   + F  MQ  G KPT  T   V+ +CA L++
Sbjct: 261 FDNMENKDSVSWNSMIAGHVINGQDLE-AFETFNNMQLAGAKPTHATFASVIKSCASLKE 319

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L   + +H      G   + ++  ALM    +C E      +      V+ VV W+++I 
Sbjct: 320 LGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMIS 379

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           GY Q+GD  +A+ LFS MR E ++PN  T   IL +     F+S    +H  ++K     
Sbjct: 380 GYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTIL-TVQHAVFISE---IHAEVIKTNYEK 435

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
             S+G AL++ + K G+I+ + ++F  +  +D ++W+ +++GY   G  EEA ++F ++ 
Sbjct: 436 SSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLT 495

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
             G++P+  T  +I++AC       E    F+    + ++  A+   +  V L  K G I
Sbjct: 496 REGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLNNALCVSSSLVTLYAKRGNI 555

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGR----LEVAEMLAHQLIEAE 532
           E A ++      +      +S++S    HG+    LEV E +  + +E +
Sbjct: 556 ESAHEIFKRQKERDLVS-WNSMISGYAQHGQAKKALEVFEEMQKRNLEVD 604



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 139/487 (28%), Positives = 242/487 (49%), Gaps = 24/487 (4%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKF----SKPESAYQLFDEMPYRDTISWNSIINCF 104
           QLHC        A+P++ + ++++ A+     S P  A QLFD+ P RD    N ++  +
Sbjct: 25  QLHC-------HANPLLQSHVVALNARTLLRDSDPRFAQQLFDQTPLRDLKQHNQLLFRY 77

Query: 105 TQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELS 164
           ++      +L +F  +Y  G    +  ++ ++S+C+      +G Q+H   +  G     
Sbjct: 78  SRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAGSFNGTVGEQVHCQCVKCGLVH-H 136

Query: 165 VFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR 224
           + V  +L+D+Y+K  +     RVF++M  R+ VSW ++++G   ++  D   +LF  MQ 
Sbjct: 137 LSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQV 196

Query: 225 EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
           EG +P   T++ V+ A A    +  G  IH      GF+ +  +  +L+ M  + +  L 
Sbjct: 197 EGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVCNSLISMLSK-SGMLR 255

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
            AR++F+  + KD V W+S+I G+  +G   EA + F+ M+L   +P   T  +++ SC 
Sbjct: 256 DARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSCA 315

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEM-AARDFVSWT 403
               L     +HC  +K+GL+ + ++  ALM   +KC  I  +  +F+ M   +  VSWT
Sbjct: 316 SLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWT 375

Query: 404 TLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKE--AETLFNNVM 461
            +ISGY  +G  ++A+ LF  M+  GV+P+  T   IL+   HA  + E  AE +  N  
Sbjct: 376 AMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTV-QHAVFISEIHAEVIKTNYE 434

Query: 462 KEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA 521
           K   +  A+      +D   K G I DA KV   +  K      S++++     G  E A
Sbjct: 435 KSSSVGTAL------LDAFVKIGNISDAVKVFELIETK-DVIAWSAMLAGYAQAGETEEA 487

Query: 522 EMLAHQL 528
             + HQL
Sbjct: 488 AKIFHQL 494



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/255 (30%), Positives = 137/255 (53%), Gaps = 8/255 (3%)

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           A+ +F++T ++D+   + ++  YS+     EA+ LF  +    + P+S T+  +LS C  
Sbjct: 55  AQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAG 114

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
               + G  VHC  +K GL   +S+GN+L++MY+K G++    ++F+EM  RD VSW +L
Sbjct: 115 SFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSL 174

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           ++GY ++ + ++  +LF  MQ  G  PD  TV  +++A  + G V     +   V+   K
Sbjct: 175 LTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVV---K 231

Query: 466 IALAIEHYAC--YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGR-LEVAE 522
           +    E   C   + +L KSG + DA  V   M  K S    +S+++   I+G+ LE  E
Sbjct: 232 LGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVS-WNSMIAGHVINGQDLEAFE 290

Query: 523 MLAH-QLIEAEPENA 536
              + QL  A+P +A
Sbjct: 291 TFNNMQLAGAKPTHA 305



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 83/162 (51%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
            +L   G+  N     S+I AC         G Q H  A+K   +    +S+SL+++YAK
Sbjct: 492 HQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLNNALCVSSSLVTLYAK 551

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
               ESA+++F     RD +SWNS+I+ + Q+G   ++LE+F EM      + A    G+
Sbjct: 552 RGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDAITFIGV 611

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSK 177
           IS C+  G +  G+    ++I D     ++   + ++DLYS+
Sbjct: 612 ISACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSR 653


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 179/549 (32%), Positives = 312/549 (56%), Gaps = 8/549 (1%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEM 89
            P ++KAC         G ++HC   K G + D  ++ SL+ +Y+++   + A+++F +M
Sbjct: 127 FPPILKACVSLVD----GKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDM 182

Query: 90  PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGR 149
           P +D  SWN++I+ F QNG    +L +   M   G  +    +A I+ +C+Q  ++  G 
Sbjct: 183 PVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGV 242

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
            IH  V+  G  +  VFVS AL+++YSK      A  VF+QM +R+ VSW ++I+    +
Sbjct: 243 LIHLHVLKHG-LDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQN 301

Query: 210 QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGF-DFDHHL 268
            +  T +  F+ MQ  G++P  +T+  +    ++L D R  ++I G+     + D D  +
Sbjct: 302 NDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVI 361

Query: 269 SAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER 328
             AL++MY +    ++ A  +F++   KD + W++++ GY+Q+G  SEA+  ++ M   R
Sbjct: 362 GNALVNMYAKLG-YMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECR 420

Query: 329 IE-PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
              PN  T ++I+ + +    L  G+ +H  ++K  L  DV +   L+++Y KCG +  +
Sbjct: 421 DTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDA 480

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHA 447
             +F E+     V W  +I+  G HG GEEALQLF +M    V+ D IT +++LSAC+H+
Sbjct: 481 MSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHS 540

Query: 448 GLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSS 507
           GLV E +  F+ + KE  I  +++HY C VDLLG++G +E A ++V  MP++P   I  +
Sbjct: 541 GLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGA 600

Query: 508 LVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567
           L+SAC+I+G  E+  + + +L+E + EN   Y LLS + + +  W G  +V  + R +GL
Sbjct: 601 LLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGL 660

Query: 568 SKSYGFSRI 576
            K+ G+S +
Sbjct: 661 RKTPGWSSV 669



 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 166/538 (30%), Positives = 282/538 (52%), Gaps = 33/538 (6%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           +LH   L  G   + V+S  LI++Y        +   FD +  ++  SWNSII+ + + G
Sbjct: 40  KLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFG 99

Query: 109 FYVRSLEMFREMY-LCG-------FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGS 160
            Y  ++    +++ +CG       F     +L   +SL         G+++H  V   G 
Sbjct: 100 KYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD-------GKKVHCCVFKMG- 151

Query: 161 FELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFR 220
           FE  VFV+ +L+ LYS+     +A +VF  M +++  SW AMISG   + N    + +  
Sbjct: 152 FEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLN 211

Query: 221 AMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECT 280
            M+ EGVK   +T+  +L  CA+  D+ NG  IH +    G D D  +S AL++MY +  
Sbjct: 212 RMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFG 271

Query: 281 EALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPN---SVTLL 337
             L  A+++F++ +V+D+V W+SII  Y Q+ D S A++ F  M+L  I P+    V+L 
Sbjct: 272 R-LQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLT 330

Query: 338 AILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR 397
           +I S  + Q      LG    I +  L+ DV IGNAL+NMY+K G +  +H +F+++  +
Sbjct: 331 SIFSQLSDQRISRSILGF--VIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRK 388

Query: 398 DFVSWTTLISGYGFHGYGEEALQLFLEMQE-SGVEPDAITVLAILSACNHAGLVKEAETL 456
           D +SW TL++GY  +G   EA+  +  M+E     P+  T ++I+ A +H G +++   +
Sbjct: 389 DTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKI 448

Query: 457 FNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG 516
              ++K   + L +    C +DL GK G++EDA  +   +P   S    ++++++  IHG
Sbjct: 449 HAKLIK-NSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVP-WNAIIASLGIHG 506

Query: 517 RLEVAEMLAHQLIEAEPENAANYTLLSMV--CSESGNWLGAEEVWRVMRAKGLSKSYG 572
           R E A  L   ++ AE   A + T +S++  CS SG     ++ + +M+     K YG
Sbjct: 507 RGEEALQLFKDML-AERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQ-----KEYG 558


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 202/625 (32%), Positives = 328/625 (52%), Gaps = 57/625 (9%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           + TL  Y Q +   G   +    P V+KAC    + +H G  +H     +G  ++  I N
Sbjct: 109 DDTLGFYCQ-MQRLGWLPDHYTFPFVLKACGEIPSLRH-GASVHAIVCANGLGSNVFICN 166

Query: 68  SLISMYAKFSKPESAYQLFDEMPYR---DTISWNSIINCFTQNGFYVRSLEMFREM---Y 121
           S+++MY +    + A+Q+FDE+  R   D +SWNSI+  + Q G    +L +   M   Y
Sbjct: 167 SIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHY 226

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
                  A  L  I+  C+ +  L+ G+Q+H   + +G  +  VFV  AL+ +Y+KC   
Sbjct: 227 SLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVD-DVFVGNALVSMYAKCSKM 285

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE---------------- 225
             A +VFE +  ++ VSW AM++G     ++D+ + LF+ MQ E                
Sbjct: 286 NEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGY 345

Query: 226 -------------------GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDF-- 264
                              G++P  VTL  +L  CA +  L  GK  H Y      +   
Sbjct: 346 AQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNW 405

Query: 265 -----DHHLSAALMHMYCECTEALHPARIIFERTKVKD--VVIWSSIIRGYSQSGDLSEA 317
                D  +   L+ MY +C ++   AR IF+  + KD  VV W+ +I GY+Q G+ ++A
Sbjct: 406 NDKEDDLLVLNGLIDMYAKC-KSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDA 464

Query: 318 MKLFSRMRLER--IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV-SIGNAL 374
           +KLF+++  ++  ++PN+ TL   L +C R   L  G  +H Y ++     +V  +GN L
Sbjct: 465 LKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLYVGNCL 524

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           ++MYSK G I ++  +F+ M  R+ VSWT+L++GYG HG GEEAL LF +MQ+ G   D 
Sbjct: 525 IDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDG 584

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS 494
           IT L +L AC+H+G+V +    F++++K   I    EHYAC VDLLG++G++ +A +++ 
Sbjct: 585 ITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVDLLGRAGRLNEAMELIK 644

Query: 495 TMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLG 554
            M M+P+  +  +L+SA RIH  +E+ E  A +L E   EN  +YTLLS + + +  W  
Sbjct: 645 NMSMEPTAVVWVALLSASRIHANIELGEYAASKLTELGAENDGSYTLLSNLYANARRWKD 704

Query: 555 AEEVWRVMRAKGLSKSYGFSRIENE 579
              +  +M+  G+ K  G S I+ +
Sbjct: 705 VARIRSLMKHTGIRKRPGCSWIQGK 729



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 140/516 (27%), Positives = 250/516 (48%), Gaps = 57/516 (11%)

Query: 89  MPYRDTISW-NSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELEL 147
           +P   T+ W N++I    + G    +L  + +M   G++        ++  C +I  L  
Sbjct: 86  IPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRH 145

Query: 148 GRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV---IRNEVSWTAMIS 204
           G  +HA+V  +G    +VF+  +++ +Y +C     A ++F++++   I + VSW ++++
Sbjct: 146 GASVHAIVCANG-LGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILA 204

Query: 205 GCIDSQNYDTGIDL-FRAMQREGVK--PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
             +      T + + FR      +K  P  +TL  +L ACA +  L++GK +HG++   G
Sbjct: 205 AYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNG 264

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVV---------------------- 299
              D  +  AL+ MY +C++ ++ A  +FE  K KDVV                      
Sbjct: 265 LVDDVFVGNALVSMYAKCSK-MNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLF 323

Query: 300 -------------IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
                         WS++I GY+Q G   EA+ +F +M+L  +EPN VTL ++LS C   
Sbjct: 324 KMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASV 383

Query: 347 SFLSHGLGVHCYIMKAGLNF-------DVSIGNALMNMYSKCGSITSSHQIFNEMAARD- 398
             L +G   H Y++K  LN        D+ + N L++MY+KC S   +  IF+ +  +D 
Sbjct: 384 GALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDK 443

Query: 399 -FVSWTTLISGYGFHGYGEEALQLFLEM--QESGVEPDAITVLAILSACNHAGLVKEAET 455
             V+WT +I GY  HG   +AL+LF ++  Q++ ++P+A T+   L AC   G ++    
Sbjct: 444 NVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQ 503

Query: 456 LFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIH 515
           L    ++ +  +  +    C +D+  KSG I+ A  V   M ++      +SL++   +H
Sbjct: 504 LHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVS-WTSLMTGYGMH 562

Query: 516 GRLEVAEMLAHQLIE-AEPENAANYTLLSMVCSESG 550
           GR E A  L  Q+ +     +   + ++   CS SG
Sbjct: 563 GRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSG 598



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 166/334 (49%), Gaps = 13/334 (3%)

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           +ISL  Q   L   +  H  + V G  E+  +   A    Y +C     A+ + ++++  
Sbjct: 33  LISLLRQCKTLINAKLAHQQIFVHGFTEMFSYAVGA----YIECGASAEAVSLLQRLIPS 88

Query: 195 NEVS--WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKA 252
           +     W A+I   +     D  +  +  MQR G  P   T   VL AC E+  LR+G +
Sbjct: 89  HSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGAS 148

Query: 253 IHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERT---KVKDVVIWSSIIRGYS 309
           +H      G   +  +  +++ MY  C  AL  A  +F+     K++D+V W+SI+  Y 
Sbjct: 149 VHAIVCANGLGSNVFICNSIVAMYGRCG-ALDDAHQMFDEVLERKIEDIVSWNSILAAYV 207

Query: 310 QSGDLSEAMKLFSRMRLE---RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           Q G    A+++  RM      ++ P+++TL+ IL +C     L HG  VH + ++ GL  
Sbjct: 208 QGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVD 267

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           DV +GNAL++MY+KC  +  ++++F  +  +D VSW  +++GY   G  + AL LF  MQ
Sbjct: 268 DVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQ 327

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNV 460
           E  ++ D IT  A+++     G   EA  +F  +
Sbjct: 328 EEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQM 361



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 158/354 (44%), Gaps = 30/354 (8%)

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFD--FDHHLSAALMHMYCECTEALHPA 286
           P  + L  +L  C   + L N K  H   +  GF   F + + A     Y EC  +    
Sbjct: 28  PPTIPLISLLRQC---KTLINAKLAHQQIFVHGFTEMFSYAVGA-----YIECGASAEAV 79

Query: 287 RIIFERTKVKDVVIW-SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
            ++         V W +++IR   + G L + +  + +M+     P+  T   +L +C  
Sbjct: 80  SLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGE 139

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR---DFVSW 402
              L HG  VH  +   GL  +V I N+++ MY +CG++  +HQ+F+E+  R   D VSW
Sbjct: 140 IPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSW 199

Query: 403 TTLISGYGFHGYGEEALQLFLEMQES---GVEPDAITVLAILSACNHAGLVKEAE----- 454
            ++++ Y   G    AL++   M       + PDAIT++ IL AC     ++  +     
Sbjct: 200 NSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGF 259

Query: 455 TLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRI 514
           ++ N ++ +  +  A+      V +  K  K+ +A KV   +  K      +++V+    
Sbjct: 260 SVRNGLVDDVFVGNAL------VSMYAKCSKMNEANKVFEGIKKKDVVS-WNAMVTGYSQ 312

Query: 515 HGRLEVAEMLAHQLIEAEPE-NAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567
            G  + A  L   + E + + +   ++ +    ++ G+   A +V+R M+  GL
Sbjct: 313 IGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGL 366


>gi|255544622|ref|XP_002513372.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547280|gb|EEF48775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 597

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 187/570 (32%), Positives = 319/570 (55%), Gaps = 9/570 (1%)

Query: 15  KQELH-----PSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSL 69
           KQ  H     P   + ++++   +++ C   +  +  G  +H   +++G D++  +S  L
Sbjct: 20  KQRFHHSPCEPELTHLSSSLYMKILQLCIETEDLKQ-GCLIHSHIIRNGFDSNLHLSTKL 78

Query: 70  ISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKA 129
           I  Y KF +  +A ++FD MP R+ +SW + I+ + +NG Y  +L +F +M   G     
Sbjct: 79  IIFYVKFGETINARKVFDRMPERNVVSWTAQISGYAKNGHYQDALLVFSQMGRAGVRANQ 138

Query: 130 ELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
                ++  C+ +  LE G QIH   I    F  ++FV +AL+DL+SKC +   A  +FE
Sbjct: 139 FTYGSVLRACTGLRCLERGMQIHG-CIQKNRFIGNLFVQSALVDLHSKCGNMEDARYLFE 197

Query: 190 QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
            M  R+ VSW A+I G       D    +F +M  EGV P   TL  VL A +   +L  
Sbjct: 198 TMSERDVVSWNAVIGGYAAQDFNDDSFRMFYSMMGEGVTPDCFTLGSVLKASSRANNLIK 257

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
              IHG     GF     L+ +L+  Y + +E +  A  +++    KDV+ +++I+ GY+
Sbjct: 258 VCQIHGIIIQLGFGSHIDLNGSLIDAYAK-SEGMKSASALYKSMLKKDVISFTAIMTGYA 316

Query: 310 QSGDLS-EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
           +    S EA+ LF  M+   +E + VT   +L+ C   + LS G  +H   +K   ++DV
Sbjct: 317 RKCSYSREALDLFKDMQHIFMEIDDVTFCTMLNVCADIASLSIGRQIHALAIKYKPSYDV 376

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
           + GNAL++MY+K G I  + + F EM  ++ +SWT+LI+GYG HGYG EA+ L+ +M+  
Sbjct: 377 ATGNALVDMYAKSGEIEDATRAFYEMKEKNVISWTSLITGYGKHGYGHEAIALYKKMEYE 436

Query: 429 GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIED 488
           G++P+ IT L++L AC+H+GL  E    FNN++ +  I    EHY+C +DL  + G++E+
Sbjct: 437 GLKPNDITFLSLLFACSHSGLTGEGWECFNNMITKYNILPRAEHYSCMIDLFARGGQLEE 496

Query: 489 ACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSE 548
           A  ++  M +KP++ +  +++ AC I+G + + E+ A  L+  +PEN+ANY +L+ + + 
Sbjct: 497 AYNMICKMNIKPNSSLWGAILGACSIYGHMSLGEVAATHLLRMDPENSANYVVLAGIYAA 556

Query: 549 SGNWLGAEEVWRVMRAKGLSKSYGFSRIEN 578
           SG+W  A  +  +M  + L K  G+S I++
Sbjct: 557 SGSWDKACRMRNLMEYRSLKKIPGYSIIQS 586


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 188/562 (33%), Positives = 304/562 (54%), Gaps = 4/562 (0%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQ-HFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           ++   G   N     S++ A A   T    +  ++H  A K+G  +D  + N+LI MYAK
Sbjct: 222 QMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAK 281

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
               + A  +FD M  RD ISWN++I    QNG    +  +F +M   GFV  +     +
Sbjct: 282 CGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSL 341

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           ++     G  E  +++H   +  G     + V +A + +Y +C     A  +F+++ +RN
Sbjct: 342 LNTHVSTGAWEWVKEVHKHAVEVGLVS-DLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRN 400

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
             +W AMI G    +     + LF  M+REG  P   T   +L A      L   K +H 
Sbjct: 401 VTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHS 460

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
           YA   G   D  +  AL+HMY +C   ++ A+ +F+    ++V  W+ +I G +Q G   
Sbjct: 461 YAIDAGL-VDLRVGNALVHMYAKCGNTMY-AKQVFDDMVERNVTTWTVMISGLAQHGCGH 518

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           EA  LF +M  E I P++ T ++ILS+C     L     VH + + AGL  D+ +GNAL+
Sbjct: 519 EAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALV 578

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           +MY+KCGS+  + ++F++M  RD  SWT +I G   HG G +AL LF++M+  G +P+  
Sbjct: 579 HMYAKCGSVDDARRVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGY 638

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           + +A+LSAC+HAGLV E    F ++ ++  I   +EHY C VDLLG++G++E+A   +  
Sbjct: 639 SFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILN 698

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGA 555
           MP++P      +L+ AC  +G LE+AE  A + ++ +P++A+ Y LLS + + +GNW   
Sbjct: 699 MPIEPGDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGNWEQK 758

Query: 556 EEVWRVMRAKGLSKSYGFSRIE 577
             V  +M+ +G+ K  G S IE
Sbjct: 759 LLVRSMMQRRGIRKEPGRSWIE 780



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 136/440 (30%), Positives = 222/440 (50%), Gaps = 6/440 (1%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           + E  + +Y Q +   G   N     S++KAC  +     +G ++H   ++SG  +D  +
Sbjct: 10  YAEDAMKVYSQ-MRREGGQPNEITYLSILKACC-SPVSLKWGKKIHAHIIQSGFQSDVRV 67

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
             +L++MY K    + A  +FD+M  R+ ISW  +I      G    +   F +M   GF
Sbjct: 68  ETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGF 127

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
           +  +     I++  +  G LE  +++H+   V+    L + V  AL+ +Y+K      A 
Sbjct: 128 IPNSYTYVSILNANASAGALEWVKEVHSHA-VNAGLALDLRVGNALVHMYAKSGSIDDAR 186

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA--E 243
            VF+ MV R+  SWT MI G            LF  M+R G  P   T   +L A A   
Sbjct: 187 VVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITS 246

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
              L   K +H +A   GF  D  +  AL+HMY +C  ++  AR++F+    +DV+ W++
Sbjct: 247 TGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCG-SIDDARLVFDGMCDRDVISWNA 305

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           +I G +Q+G   EA  +F +M+ E   P+S T L++L++            VH + ++ G
Sbjct: 306 MIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVG 365

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
           L  D+ +G+A ++MY +CGSI  +  IF+++A R+  +W  +I G      G EAL LFL
Sbjct: 366 LVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFL 425

Query: 424 EMQESGVEPDAITVLAILSA 443
           +M+  G  PDA T + ILSA
Sbjct: 426 QMRREGFFPDATTFVNILSA 445



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 126/405 (31%), Positives = 204/405 (50%), Gaps = 5/405 (1%)

Query: 100 IINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDG 159
           +I  + + G+   +++++ +M   G          I+  C     L+ G++IHA +I  G
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 160 SFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLF 219
            F+  V V TAL+++Y KC     A  +F++MV RN +SWT MI G             F
Sbjct: 61  -FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRF 119

Query: 220 RAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCEC 279
             MQREG  P   T   +L A A    L   K +H +A   G   D  +  AL+HMY + 
Sbjct: 120 LQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAK- 178

Query: 280 TEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAI 339
           + ++  AR++F+    +D+  W+ +I G +Q G   EA  LF +M      PN  T L+I
Sbjct: 179 SGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSI 238

Query: 340 L--SSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR 397
           L  S+ T    L     VH +  KAG   D+ +GNAL++MY+KCGSI  +  +F+ M  R
Sbjct: 239 LNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDR 298

Query: 398 DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLF 457
           D +SW  +I G   +G G EA  +FL+MQ+ G  PD+ T L++L+     G  +  + + 
Sbjct: 299 DVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVH 358

Query: 458 NNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPST 502
            + + E  +   +   + +V +  + G I+DA  +   + ++  T
Sbjct: 359 KHAV-EVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVT 402



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 128/225 (56%), Gaps = 2/225 (0%)

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           +I GY++ G   +AMK++S+MR E  +PN +T L+IL +C     L  G  +H +I+++G
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
              DV +  AL+NMY KCGSI  +  IF++M  R+ +SWT +I G   +G G+EA   FL
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS 483
           +MQ  G  P++ T ++IL+A   AG ++  + + ++ +    +AL +      V +  KS
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVN-AGLALDLRVGNALVHMYAKS 179

Query: 484 GKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
           G I+DA +VV    ++      + ++     HGR + A  L  Q+
Sbjct: 180 GSIDDA-RVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQM 223


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 187/517 (36%), Positives = 297/517 (57%), Gaps = 10/517 (1%)

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           N+LI+ YAK S    A Q+FDE+P  D +S+N++I  +   G    +L +F E+    F 
Sbjct: 79  NTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAEVRELRFG 138

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
           L    L+G+I  C    ++ L RQ+H  V+V G ++    V+ A+L  YS+      A R
Sbjct: 139 LDGFTLSGVIIACGD--DVGLVRQLHCFVVVCG-YDCYASVNNAVLACYSRKGFLNEARR 195

Query: 187 VFEQMVI---RNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
           VF +M     R+EVSW AMI  C   +     ++LFR M R G+K    T+  VL A   
Sbjct: 196 VFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLTAFTC 255

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
           ++DL  G   HG     GF  + H+ + L+ +Y +C   +   R +FE     D+V+W++
Sbjct: 256 VKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAAPDLVLWNT 315

Query: 304 IIRGYSQSGDLSE-AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
           +I G+SQ  DLSE  +  F  M+     P+  + + + S+C+  S  S G  VH   +K+
Sbjct: 316 MISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQVHALAIKS 375

Query: 363 GLNFD-VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
            + ++ VS+ NAL+ MYSKCG++  + ++F+ M   + VS  ++I+GY  HG   E+L+L
Sbjct: 376 DIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQHGVEVESLRL 435

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK-KIALAIEHYACYVDLL 480
           F  M +  + P+ IT +A+LSAC H G V+E +  FN +MKE+ +I    EHY+C +DLL
Sbjct: 436 FELMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFN-MMKERFRIEPEAEHYSCMIDLL 494

Query: 481 GKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYT 540
           G++GK+++A +++ TMP  P +   ++L+ ACR HG +E+A   A++ ++ EP NAA Y 
Sbjct: 495 GRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLQLEPYNAAPYV 554

Query: 541 LLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +LS + + +  W  A  V R+MR +G+ K  G S IE
Sbjct: 555 MLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIE 591



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 109/479 (22%), Positives = 214/479 (44%), Gaps = 40/479 (8%)

Query: 123 CGFVLKAELLAGIISLCSQIGELELGRQIHALVI-------------------------- 156
           C F L+ +    ++  C    +L  G+ +HAL                            
Sbjct: 3   CTFPLQLQTFRNLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHN 62

Query: 157 VDGSFELS----VFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNY 212
              SF+L+    VF    L++ Y+K     +A +VF+++   + VS+  +I+   D    
Sbjct: 63  AQTSFDLTQYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGEC 122

Query: 213 DTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAAL 272
              + LF  ++         TL+ V++AC +  D+   + +H +   CG+D    ++ A+
Sbjct: 123 RPALRLFAEVRELRFGLDGFTLSGVIIACGD--DVGLVRQLHCFVVVCGYDCYASVNNAV 180

Query: 273 MHMYCECTEALHPARIIFERTKV---KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
           +  Y      L+ AR +F        +D V W+++I    Q  +  EA++LF  M    +
Sbjct: 181 LACYSR-KGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGL 239

Query: 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC-GSITSSH 388
           + +  T+ ++L++ T    L  G+  H  ++K+G + +  +G+ L+++YSKC G +    
Sbjct: 240 KVDMFTMASVLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECR 299

Query: 389 QIFNEMAARDFVSWTTLISGYG-FHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHA 447
           ++F E+AA D V W T+ISG+  +    E+ +  F EMQ +G  PD  + + + SAC++ 
Sbjct: 300 KVFEEIAAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNL 359

Query: 448 GLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSS 507
                 + +    +K       +      V +  K G + DA +V  TMP + +   L+S
Sbjct: 360 SSPSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMP-EHNMVSLNS 418

Query: 508 LVSACRIHG-RLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAK 565
           +++    HG  +E   +    L +    N   +  +   C  +G     ++ + +M+ +
Sbjct: 419 MIAGYAQHGVEVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMMKER 477



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 90/203 (44%), Gaps = 3/203 (1%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPV-ISNSLISMYA 74
           +E+  +G + +      V  AC+   +    G Q+H  A+KS    + V ++N+L++MY+
Sbjct: 335 REMQHNGFHPDDCSFVCVTSACSNLSS-PSVGKQVHALAIKSDIPYNRVSVNNALVAMYS 393

Query: 75  KFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAG 134
           K      A ++FD MP  + +S NS+I  + Q+G  V SL +F  M              
Sbjct: 394 KCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDIAPNTITFIA 453

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           ++S C   G++E G++   ++      E      + ++DL  +      A R+ E M   
Sbjct: 454 VLSACVHTGKVEEGQKYFNMMKERFRIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFN 513

Query: 195 -NEVSWTAMISGCIDSQNYDTGI 216
              + W  ++  C    N +  +
Sbjct: 514 PGSIEWATLLGACRKHGNVELAV 536


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 191/583 (32%), Positives = 321/583 (55%), Gaps = 9/583 (1%)

Query: 1   MVSKHFYE----QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALK 56
           ++S H  E    + L L+++ +   G+ SNT    S ++AC    T    G  +H   LK
Sbjct: 222 IISAHVGEGESLEALSLFRR-MQEVGVESNTYTFVSALQACE-GPTFIKIGRGIHAVILK 279

Query: 57  SGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEM 116
           S    D  +SN+LI+MYA   + E A ++F  M ++D +SWN++++   QN  Y  ++  
Sbjct: 280 SNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINH 339

Query: 117 FREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYS 176
           F++M   G       +  +I+   +   L  G ++HA  I  G  + ++ +  +L+D+Y 
Sbjct: 340 FQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHG-IDSNMHIGNSLIDMYG 398

Query: 177 KCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTI 236
           KC         FE M  ++ +SWT +I+G   ++ +   ++L R +Q E +    + +  
Sbjct: 399 KCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGS 458

Query: 237 VLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK 296
           +LLAC+ L+  +  K IHGY    G   D  +  A++++Y E    +  AR +FE    K
Sbjct: 459 ILLACSGLKSEKLIKEIHGYVLKGGLA-DILIQNAIVNVYGELA-LVDYARHVFESINSK 516

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVH 356
           D+V W+S+I     +G   EA++LF+ +    IEP+ +TL+++L +    S L  G  +H
Sbjct: 517 DIVSWTSMITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIH 576

Query: 357 CYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGE 416
            ++++ G   +  I N+L++MY++CG++ ++  IFN +  RD + WT++I+  G HG G+
Sbjct: 577 GFLIRKGFFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLILWTSMINANGMHGCGK 636

Query: 417 EALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACY 476
           +A+ LF +M +  V PD IT LA+L AC+H+GLV E +  F  +  E K+    EHYAC 
Sbjct: 637 DAIDLFSKMTDENVLPDHITFLALLYACSHSGLVVEGKQHFEIMKNEYKLEPWPEHYACL 696

Query: 477 VDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENA 536
           VDLL +S  +E+A   V  MP++PS  +  +L+ ACRIH   ++ E+ A +L++   EN+
Sbjct: 697 VDLLARSNSLEEAYHFVRNMPIEPSAEVWCALLGACRIHSNNDLGEVAAKKLLQLNTENS 756

Query: 537 ANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIENE 579
            NY L+S   +  G W   EEV  +M+   L K  G S IE E
Sbjct: 757 GNYVLVSNTFAADGRWNDVEEVRSIMKGNKLKKKPGCSWIEVE 799



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 145/537 (27%), Positives = 261/537 (48%), Gaps = 13/537 (2%)

Query: 4   KHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADP 63
           K  ++   H +   L  +  +         ++ CA  +     G QLH   LK+ +  D 
Sbjct: 23  KEAFQSLTHFFTDPLPTTTRFPLQQAYSQALELCASHKALPQ-GQQLHAHFLKTQNYLDS 81

Query: 64  V-ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL 122
           V +    + MY K      A ++FD+M  R   +WN++I      G YV ++E+++EM +
Sbjct: 82  VFLDTKFVHMYGKCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRV 141

Query: 123 CGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL 182
            G  L A     ++  C    E  LG +IH + +  G +   VFV  AL+ +Y+KC    
Sbjct: 142 LGVSLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCG-YGGFVFVCNALIAMYAKCGDLG 200

Query: 183 IALRVFEQMVIRNE--VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
            A  +F+  ++  +  VSW ++IS  +        + LFR MQ  GV+    T    L A
Sbjct: 201 GARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQA 260

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
           C     ++ G+ IH          D ++S AL+ MY  C + +  A  +F+    KD V 
Sbjct: 261 CEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQ-MEDAERVFKSMLFKDCVS 319

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           W++++ G  Q+   S+A+  F  M+    +P+ V++L ++++  R + L  G+ VH Y +
Sbjct: 320 WNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAI 379

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
           K G++ ++ IGN+L++MY KC  +      F  M  +D +SWTT+I+GY  +    +AL 
Sbjct: 380 KHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALN 439

Query: 421 LFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLL 480
           L  ++Q   ++ D + + +IL AC+     K  + +   V+K     + I++    V++ 
Sbjct: 440 LLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLKGGLADILIQN--AIVNVY 497

Query: 481 GKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEM-LAHQLIEA--EPE 534
           G+   ++ A  V  ++  K      +S+++ C +H  L +  + L + LIE   EP+
Sbjct: 498 GELALVDYARHVFESINSKDIVS-WTSMITCC-VHNGLAIEALELFNSLIETNIEPD 552


>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
          Length = 766

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 185/557 (33%), Positives = 306/557 (54%), Gaps = 3/557 (0%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G   +    P VIKAC         G  +H      G + D  + +SLI  Y++      
Sbjct: 142 GTLPDKYTFPYVIKACG-GLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHD 200

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A  LFD MP +D + WN ++N + +NG +  +  +F EM        +   A ++S+C+ 
Sbjct: 201 ARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCAS 260

Query: 142 IGELELGRQIHALVIVDG-SFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
              +  G Q+H LV+  G   +  V  + AL+D+Y KC    +A ++F+Q    + V  T
Sbjct: 261 EIMINFGSQLHGLVVSSGLEMDSPVANTFALIDIYFKCRDVEMARKIFDQRTPVDIVVCT 320

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
           AMISG + +   +  +++FR + +E ++   VTL  VL ACA L  L  GK +HG+    
Sbjct: 321 AMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKN 380

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
           G     ++ +A+M MY +C   L  A   F     KD V W+S+I   SQ+G   EA+ L
Sbjct: 381 GHGGSCYVGSAIMDMYAKCGR-LDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDL 439

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
           F +M +   + + V++ A LS+C     L +G  +H ++M+     D+   +AL++MYSK
Sbjct: 440 FRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSK 499

Query: 381 CGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
           CG++  + ++F+ M  ++ VSW ++I+ YG HG  +++L LF  M   G++PD +T LAI
Sbjct: 500 CGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAI 559

Query: 441 LSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKP 500
           +SAC HAG V E    F  + +E  I   +EHYAC VDL G++G++ +A  ++++MP  P
Sbjct: 560 ISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSP 619

Query: 501 STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWR 560
              +  +L+ ACR+HG +E+AE+ +  L + +P+N+  Y LLS V + +G W    ++  
Sbjct: 620 DAGVWGTLLGACRLHGNVELAEVASRNLFDLDPQNSGYYVLLSNVHANAGQWESVLKIRS 679

Query: 561 VMRAKGLSKSYGFSRIE 577
           +M+ +G+ K  G S I+
Sbjct: 680 LMKERGVQKVPGCSWID 696



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 148/529 (27%), Positives = 268/529 (50%), Gaps = 18/529 (3%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEM 89
           L S+++ C         G Q H   L +G   + ++   L+ MY        A  +F ++
Sbjct: 49  LVSILQTCTDPSGLSQ-GRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQL 107

Query: 90  PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGR 149
               +  WN +I  FT  G +  +L  + +M  CG +        +I  C  +  + LGR
Sbjct: 108 RLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGR 167

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSK--CHHWLIALRVFEQMVIRNEVSWTAMISGCI 207
            +H  +   G FEL VFV ++L+  YS+  C H   A  +F++M  ++ V W  M++G +
Sbjct: 168 VVHDKIQFMG-FELDVFVGSSLIKFYSENGCIH--DARYLFDRMPSKDGVLWNVMLNGYV 224

Query: 208 DSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
            + ++D    +F  M+R    P  VT   VL  CA    +  G  +HG     G + D  
Sbjct: 225 KNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSP 284

Query: 268 LSA--ALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR 325
           ++   AL+ +Y +C + +  AR IF++    D+V+ +++I GY  +G  + A+++F  + 
Sbjct: 285 VANTFALIDIYFKCRD-VEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLL 343

Query: 326 LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSIT 385
            ER+  NSVTL ++L +C   + L+ G  +H +I+K G      +G+A+M+MY+KCG + 
Sbjct: 344 QERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLD 403

Query: 386 SSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
            +HQ F  ++ +D V W ++I+    +G  EEA+ LF +M  +G + D +++ A LSAC 
Sbjct: 404 LAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACA 463

Query: 446 HAGLVKEAETLFNNVMKEKKIALAIEHYA--CYVDLLGKSGKIEDACKVVSTMPMKPSTR 503
           +   +   + +   +M+    A   + +A    +D+  K G ++ AC+V  TM  K    
Sbjct: 464 NLPALHYGKEIHAFMMRG---AFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVS 520

Query: 504 ILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLSMVCSESG 550
             +S+++A   HGRL+ +  L H ++    +P++     ++S  C  +G
Sbjct: 521 -WNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIIS-ACGHAG 567



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 112/407 (27%), Positives = 198/407 (48%), Gaps = 16/407 (3%)

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
           A  L  I+  C+    L  GRQ HA ++V+G    +  + T LL +Y  C  +L A  +F
Sbjct: 46  APQLVSILQTCTDPSGLSQGRQAHAQMLVNG-IGYNGILGTKLLGMYVLCGAFLDAKNIF 104

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
            Q+ +     W  MI G      +D  +  +  M   G  P + T   V+ AC  L  + 
Sbjct: 105 YQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVA 164

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
            G+ +H      GF+ D  + ++L+  Y E    +H AR +F+R   KD V+W+ ++ GY
Sbjct: 165 LGRVVHDKIQFMGFELDVFVGSSLIKFYSE-NGCIHDARYLFDRMPSKDGVLWNVMLNGY 223

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
            ++GD   A  +F  MR     PNSVT   +LS C  +  ++ G  +H  ++ +GL  D 
Sbjct: 224 VKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDS 283

Query: 369 SIGN--ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
            + N  AL+++Y KC  +  + +IF++    D V  T +ISGY  +G    AL++F  + 
Sbjct: 284 PVANTFALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLL 343

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYV-----DLLG 481
           +  +  +++T+ ++L AC     +   + L  +++K           +CYV     D+  
Sbjct: 344 QERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGG------SCYVGSAIMDMYA 397

Query: 482 KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
           K G+++ A +    +  K +    +S++++C  +G+ E A  L  Q+
Sbjct: 398 KCGRLDLAHQTFIGISDKDAV-CWNSMITSCSQNGKPEEAIDLFRQM 443


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 184/576 (31%), Positives = 315/576 (54%), Gaps = 11/576 (1%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGS-DADPVI 65
           Y + L  Y++ +   GL  + A+    I  C+ ++  +  G  LH   L++   + D ++
Sbjct: 39  YREALGYYRR-MVLEGLRPDGAMFVVAIGVCSSSKDLKQ-GQLLHAMILETQLLEFDIIL 96

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC-- 123
             +LI+MYA+    E A + FDEM  +  ++WN++I  +++NG +  +L+++++M     
Sbjct: 97  GTALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSP 156

Query: 124 -GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL 182
            G    A   +  +  CS +G++  GR+I A  +  G    S+ V  AL+++YSKC    
Sbjct: 157 EGMKPDAITFSSALYACSVVGDISQGREIEARTVASGYASDSI-VQNALINMYSKCGSLE 215

Query: 183 IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
            A +VF+++  R+ ++W  MISG          ++LF+ M     KP  VT   +L AC 
Sbjct: 216 SARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACT 275

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
            L DL  G+AIH      G++ D  +   L++MY +C+ +L  AR +FER + +DV+ W+
Sbjct: 276 NLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWN 335

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
            +I  Y Q G   +A+ +F +M+LE + PN +TL  +LS+C        G  VH  I   
Sbjct: 336 ILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASG 395

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
               DV + N+LMNMY++CGS+  +  +F  +  +  VSW+TLI+ Y  HG+    L+ F
Sbjct: 396 RCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHF 455

Query: 423 LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGK 482
            E+ + G+  D +T+++ LSAC+H G++KE    F +++ +  +A    H+ C VDLL +
Sbjct: 456 WELLQEGLAADDVTMVSTLSACSHGGMLKEGVQSFLSMVGDHGLAPDYRHFLCMVDLLSR 515

Query: 483 SGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENA-ANYTL 541
           +G++E A  ++  MP  P     +SL+S C++H   + A  +A +L E E E+  +  TL
Sbjct: 516 AGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTVTL 575

Query: 542 LSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           LS V +E+G W   ++V +    +   K+ G S IE
Sbjct: 576 LSNVYAEAGRW---DDVRKTRNRRAARKNPGCSYIE 608



 Score =  243 bits (619), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 132/450 (29%), Positives = 243/450 (54%), Gaps = 9/450 (2%)

Query: 72  MYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAEL 131
           MY K      A  +F  + + +++SW  I+  F +NG Y  +L  +R M L G      +
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 132 LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM 191
               I +CS   +L+ G+ +HA+++     E  + + TAL+ +Y++C    +A + F++M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 192 VIRNEVSWTAMISGCIDSQNYDTGIDLFRAM---QREGVKPTRVTLTIVLLACAELRDLR 248
             +  V+W A+I+G   + ++   + +++ M     EG+KP  +T +  L AC+ + D+ 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDIS 180

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
            G+ I       G+  D  +  AL++MY +C  +L  AR +F+R K +DV+ W+++I GY
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCG-SLESARKVFDRLKNRDVIAWNTMISGY 239

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
           ++ G  ++A++LF RM     +PN VT + +L++CT    L  G  +H  + + G   D+
Sbjct: 240 AKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDL 299

Query: 369 SIGNALMNMYSKC-GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
            IGN L+NMY+KC  S+  + Q+F  +  RD ++W  LI  Y  +G  ++AL +F +MQ 
Sbjct: 300 VIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQL 359

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK-KIALAIEHYACYVDLLGKSGKI 486
             V P+ IT+  +LSAC   G  ++ + +   +   + K  + +E+    +++  + G +
Sbjct: 360 ENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLEN--SLMNMYNRCGSL 417

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHG 516
           +D   V + +  K S    S+L++A   HG
Sbjct: 418 DDTVGVFAAIRDK-SLVSWSTLIAAYAQHG 446


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 183/576 (31%), Positives = 315/576 (54%), Gaps = 11/576 (1%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGS-DADPVI 65
           Y + L  Y++ +   GL  + A+    I  C+ ++  +  G  LH   L++   + D ++
Sbjct: 39  YREALGYYRR-MVLEGLRPDGAMFVVAIGVCSSSKDLKQ-GQLLHAMILETRLLEFDIIL 96

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC-- 123
             +LI+MYA+    E A + FDEM  +  ++WN++I  +++NG +  +L+++++M     
Sbjct: 97  GTALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSP 156

Query: 124 -GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL 182
            G    A   +  +  C+ +G++  GR+I A  +  G    S+ V  AL+++YSKC    
Sbjct: 157 EGMKPDAITFSSALYACTVVGDISQGREIEARTVASGYASDSI-VQNALINMYSKCGSLE 215

Query: 183 IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
            A +VF+++  R+ ++W  MISG          ++LF+ M     KP  VT   +L AC 
Sbjct: 216 SARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACT 275

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
            L DL  G+AIH      G++ D  +   L++MY +C+ +L  AR +FER + +DV+ W+
Sbjct: 276 NLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWN 335

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
            +I  Y Q G   +A+ +F +M+LE + PN +TL  +LS+C        G  VH  I   
Sbjct: 336 ILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASG 395

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
               DV + N+LMNMY++CGS+  +  +F  +  +  VSW+TLI+ Y  HG+    L+ F
Sbjct: 396 RCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHF 455

Query: 423 LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGK 482
            E+ + G+  D +T+++ LSAC+H G++KE    F +++ +  +A    H+ C VDLL +
Sbjct: 456 WELLQEGLAADDVTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLAPDYRHFLCMVDLLSR 515

Query: 483 SGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENA-ANYTL 541
           +G++E A  ++  MP  P     +SL+S C++H   + A  +A +L E E E+  +  TL
Sbjct: 516 AGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTVTL 575

Query: 542 LSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           LS V +E+G W   ++V +    +   K+ G S IE
Sbjct: 576 LSNVYAEAGRW---DDVRKTRNRRAARKNPGCSYIE 608



 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 133/450 (29%), Positives = 242/450 (53%), Gaps = 9/450 (2%)

Query: 72  MYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAEL 131
           MY K      A  +F  + + +++SW  I+  F +NG Y  +L  +R M L G      +
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 132 LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM 191
               I +CS   +L+ G+ +HA+++     E  + + TAL+ +Y++C    +A + F++M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 192 VIRNEVSWTAMISGCIDSQNYDTGIDLFRAM---QREGVKPTRVTLTIVLLACAELRDLR 248
             +  V+W A+I+G   + ++   + +++ M     EG+KP  +T +  L AC  + D+ 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDIS 180

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
            G+ I       G+  D  +  AL++MY +C  +L  AR +F+R K +DV+ W+++I GY
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCG-SLESARKVFDRLKNRDVIAWNTMISGY 239

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
           ++ G  ++A++LF RM     +PN VT + +L++CT    L  G  +H  + + G   D+
Sbjct: 240 AKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDL 299

Query: 369 SIGNALMNMYSKC-GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
            IGN L+NMY+KC  S+  + Q+F  M  RD ++W  LI  Y  +G  ++AL +F +MQ 
Sbjct: 300 VIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQL 359

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK-KIALAIEHYACYVDLLGKSGKI 486
             V P+ IT+  +LSAC   G  ++ + +   +   + K  + +E+    +++  + G +
Sbjct: 360 ENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLEN--SLMNMYNRCGSL 417

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHG 516
           +D   V + +  K S    S+L++A   HG
Sbjct: 418 DDTVGVFAAIRDK-SLVSWSTLIAAYAQHG 446


>gi|302765581|ref|XP_002966211.1| hypothetical protein SELMODRAFT_85415 [Selaginella moellendorffii]
 gi|300165631|gb|EFJ32238.1| hypothetical protein SELMODRAFT_85415 [Selaginella moellendorffii]
          Length = 969

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 186/541 (34%), Positives = 306/541 (56%), Gaps = 13/541 (2%)

Query: 11  LHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLI 70
           L LY+  LH  G+   T  L  V++AC  +      G  +H   ++SG + D ++  SL+
Sbjct: 403 LPLYRSMLH-EGVMPKTLALSMVLEACG-SLAELKGGKLVHAHVIESGLEGD-LVGISLV 459

Query: 71  SMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE 130
           +MYAK      A ++FD +  R  I WNS+I  + +   +  +L +FREM   G      
Sbjct: 460 NMYAKCGTVGEARKVFDRINNRSRILWNSMITAYQEKDPH-EALHLFREMQPEGVSPDRI 518

Query: 131 LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQ 190
               +++ C    +LE GR IH   IVD  F   V V+TAL ++Y+KC     A  VF+ 
Sbjct: 519 TFMTVLNACVNAADLENGRTIHTR-IVDSGFAADVRVATALFNMYAKCGSLGEARGVFDS 577

Query: 191 MVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNG 250
           MV R+ VSW  MI+  +  ++ +  I L  AMQ EG++P + T T +L AC++   L +G
Sbjct: 578 MVFRDVVSWNNMIAAYVQGRDGEGAISLCWAMQLEGMRPDKATFTSLLNACSDPNRLVDG 637

Query: 251 KAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFE------RTKVKDVVIWSSI 304
           + IH +      + D  +   L+ MY  C  +L+ AR IF+      R   +D+ +W+S+
Sbjct: 638 RQIHSWIAESRLENDIVMVTGLITMYANCG-SLNNAREIFDNIFSNSRQHHRDLFLWTSM 696

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
           I  Y Q G+  +A++L+ +M   ++E + VT +++L++C   S L  G  +H  +M+ GL
Sbjct: 697 ITAYEQHGEYRKALELYEQMHSRQVEADRVTFISVLNACAHLSDLRQGQAIHARVMRRGL 756

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
             DV++ N+++ MY KCGS   +  +F +   +D   WT LI+ Y  HG+GE+AL +F  
Sbjct: 757 ATDVAVANSIVFMYGKCGSFDEASIVFEKTKHKDISLWTALIASYARHGHGEQALWIFRR 816

Query: 425 MQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSG 484
           +++ G+E   +T +A+LSAC+H GL++E    F + M E  I   +EH++C VDLL ++G
Sbjct: 817 LRQDGIELSNLTFVAMLSACSHVGLIEEGCEFFAS-MAELGIEPNMEHHSCLVDLLARAG 875

Query: 485 KIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSM 544
            +  A + +S MP+  +T +L++L++ACR+HG +E A  +A +L   +PE+ A Y  LS 
Sbjct: 876 HLHTAEEFLSRMPVAANTIVLTALLAACRVHGDVERARRVAEKLEALDPESEAPYVTLSN 935

Query: 545 V 545
           +
Sbjct: 936 I 936



 Score =  265 bits (677), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 166/539 (30%), Positives = 282/539 (52%), Gaps = 21/539 (3%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSG--SDADPV 64
           +  ++ L++ E+   G   N+    S++  C  A +    G Q+H   ++S   S  D  
Sbjct: 194 FSLSIQLFR-EMLLEGTAPNSVTFVSILSGCE-APSLLEQGRQIHALVVESSLESHLDIG 251

Query: 65  ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG 124
           + N  I+MY K    + A Q F  M  RD +SW  +I  ++Q+G +  SL++FREM L G
Sbjct: 252 VLNLTINMYVKCGCLDGAVQTFARMKRRDVVSWTVMIGAYSQDGKFSLSLQLFREMLLEG 311

Query: 125 FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
               +     I+S C     LE GRQIHALV V+ S E  V V+ +LL +YS+C  W  +
Sbjct: 312 TAPNSVTFVSILSGCEAPSLLEQGRQIHALV-VESSLESHVVVANSLLGMYSRCRSWEDS 370

Query: 185 LRVFEQMVIRNEVSWTAMISGCI--DSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
             +F++M +R+ VSW+ +I  C   DS   D  + L+R+M  EGV P  + L++VL AC 
Sbjct: 371 RSLFDRMSVRDSVSWSTIIMACSREDSHCRD-ALPLYRSMLHEGVMPKTLALSMVLEACG 429

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
            L +L+ GK +H +    G + D  +  +L++MY +C   +  AR +F+R   +  ++W+
Sbjct: 430 SLAELKGGKLVHAHVIESGLEGD-LVGISLVNMYAKCG-TVGEARKVFDRINNRSRILWN 487

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
           S+I  Y Q  D  EA+ LF  M+ E + P+ +T + +L++C   + L +G  +H  I+ +
Sbjct: 488 SMITAY-QEKDPHEALHLFREMQPEGVSPDRITFMTVLNACVNAADLENGRTIHTRIVDS 546

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
           G   DV +  AL NMY+KCGS+  +  +F+ M  RD VSW  +I+ Y     GE A+ L 
Sbjct: 547 GFAADVRVATALFNMYAKCGSLGEARGVFDSMVFRDVVSWNNMIAAYVQGRDGEGAISLC 606

Query: 423 LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGK 482
             MQ  G+ PD  T  ++L+AC+    + +   + ++ + E ++   I      + +   
Sbjct: 607 WAMQLEGMRPDKATFTSLLNACSDPNRLVDGRQI-HSWIAESRLENDIVMVTGLITMYAN 665

Query: 483 SGKIEDACKVVSTMPMKPSTR-----ILSSLVSACRIHGR----LEVAEMLAHQLIEAE 532
            G + +A ++   +            + +S+++A   HG     LE+ E +  + +EA+
Sbjct: 666 CGSLNNAREIFDNIFSNSRQHHRDLFLWTSMITAYEQHGEYRKALELYEQMHSRQVEAD 724



 Score =  235 bits (600), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 155/461 (33%), Positives = 235/461 (50%), Gaps = 23/461 (4%)

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D  + N  I+MY K    + A Q F  M  RD +SW  +I  ++Q+G +  SL++FREM 
Sbjct: 44  DIGVRNLTINMYVKCGCLDGAVQTFARMKRRDVVSWTVMIGAYSQDGKFSLSLQLFREML 103

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
           L G    +     I+S C     LE GRQIHALV V+ S E  V V+ +LL +YS+C  W
Sbjct: 104 LEGTAPNSVTFVSILSGCEAPSLLEQGRQIHALV-VESSLESHVVVANSLLGMYSRCRSW 162

Query: 182 LIA-LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
             + ++ F +M  R+ VSWT MI        +   I LFR M  EG  P  VT   +L  
Sbjct: 163 EDSRMQTFARMKRRDVVSWTVMIGAYSQDGKFSLSIQLFREMLLEGTAPNSVTFVSILSG 222

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALM----HMYCECTEALHPARIIFERTKVK 296
           C     L  G+ IH  A       + HL   ++    +MY +C   L  A   F R K +
Sbjct: 223 CEAPSLLEQGRQIH--ALVVESSLESHLDIGVLNLTINMYVKCG-CLDGAVQTFARMKRR 279

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVH 356
           DVV W+ +I  YSQ G  S +++LF  M LE   PNSVT ++ILS C   S L  G  +H
Sbjct: 280 DVVSWTVMIGAYSQDGKFSLSLQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIH 339

Query: 357 CYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFH-GYG 415
             ++++ L   V + N+L+ MYS+C S   S  +F+ M+ RD VSW+T+I        + 
Sbjct: 340 ALVVESSLESHVVVANSLLGMYSRCRSWEDSRSLFDRMSVRDSVSWSTIIMACSREDSHC 399

Query: 416 EEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKE----KKIALAIE 471
            +AL L+  M   GV P  + +  +L AC     +K  + +  +V++       + +++ 
Sbjct: 400 RDALPLYRSMLHEGVMPKTLALSMVLEACGSLAELKGGKLVHAHVIESGLEGDLVGISL- 458

Query: 472 HYACYVDLLGKSGKIEDACKVVSTMPMKPSTRIL-SSLVSA 511
                V++  K G + +A KV   +  +  +RIL +S+++A
Sbjct: 459 -----VNMYAKCGTVGEARKVFDRINNR--SRILWNSMITA 492



 Score =  235 bits (600), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 167/580 (28%), Positives = 286/580 (49%), Gaps = 26/580 (4%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           +  +L L++ E+   G   N+    S++  C  A +    G Q+H   ++S  ++  V++
Sbjct: 92  FSLSLQLFR-EMLLEGTAPNSVTFVSILSGCE-APSLLEQGRQIHALVVESSLESHVVVA 149

Query: 67  NSLISMYAK-FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
           NSL+ MY++  S  +S  Q F  M  RD +SW  +I  ++Q+G +  S+++FREM L G 
Sbjct: 150 NSLLGMYSRCRSWEDSRMQTFARMKRRDVVSWTVMIGAYSQDGKFSLSIQLFREMLLEGT 209

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFE--LSVFVSTALLDLYSKCHHWLI 183
              +     I+S C     LE GRQIHALV V+ S E  L + V    +++Y KC     
Sbjct: 210 APNSVTFVSILSGCEAPSLLEQGRQIHALV-VESSLESHLDIGVLNLTINMYVKCGCLDG 268

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
           A++ F +M  R+ VSWT MI        +   + LFR M  EG  P  VT   +L  C  
Sbjct: 269 AVQTFARMKRRDVVSWTVMIGAYSQDGKFSLSLQLFREMLLEGTAPNSVTFVSILSGCEA 328

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
              L  G+ IH        +    ++ +L+ MY  C  +   +R +F+R  V+D V WS+
Sbjct: 329 PSLLEQGRQIHALVVESSLESHVVVANSLLGMYSRC-RSWEDSRSLFDRMSVRDSVSWST 387

Query: 304 IIRGYS-QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
           II   S +     +A+ L+  M  E + P ++ L  +L +C   + L  G  VH +++++
Sbjct: 388 IIMACSREDSHCRDALPLYRSMLHEGVMPKTLALSMVLEACGSLAELKGGKLVHAHVIES 447

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
           GL  D+ +G +L+NMY+KCG++  + ++F+ +  R  + W ++I+ Y       EAL LF
Sbjct: 448 GLEGDL-VGISLVNMYAKCGTVGEARKVFDRINNRSRILWNSMITAYQ-EKDPHEALHLF 505

Query: 423 LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGK 482
            EMQ  GV PD IT + +L+AC +A  ++   T+   ++ +   A  +       ++  K
Sbjct: 506 REMQPEGVSPDRITFMTVLNACVNAADLENGRTIHTRIV-DSGFAADVRVATALFNMYAK 564

Query: 483 SGKIEDACKVVSTMPMKPS---TRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANY 539
            G + +A  V  +M  +       ++++ V      G + +    A QL    P+ A   
Sbjct: 565 CGSLGEARGVFDSMVFRDVVSWNNMIAAYVQGRDGEGAISLC--WAMQLEGMRPDKATFT 622

Query: 540 TLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIENE 579
           +LL+  CS+           R++  + +      SR+EN+
Sbjct: 623 SLLN-ACSDPN---------RLVDGRQIHSWIAESRLEND 652



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 107/328 (32%), Positives = 164/328 (50%), Gaps = 3/328 (0%)

Query: 131 LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQ 190
           ++  +++ C+++G LE G+ I    +     EL + V    +++Y KC     A++ F +
Sbjct: 12  MIKTLLTACTKLGALEEGKLIQDR-LAGTQLELDIGVRNLTINMYVKCGCLDGAVQTFAR 70

Query: 191 MVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNG 250
           M  R+ VSWT MI        +   + LFR M  EG  P  VT   +L  C     L  G
Sbjct: 71  MKRRDVVSWTVMIGAYSQDGKFSLSLQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQG 130

Query: 251 KAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQ 310
           + IH        +    ++ +L+ MY  C          F R K +DVV W+ +I  YSQ
Sbjct: 131 RQIHALVVESSLESHVVVANSLLGMYSRCRSWEDSRMQTFARMKRRDVVSWTVMIGAYSQ 190

Query: 311 SGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL--NFDV 368
            G  S +++LF  M LE   PNSVT ++ILS C   S L  G  +H  ++++ L  + D+
Sbjct: 191 DGKFSLSIQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHALVVESSLESHLDI 250

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
            + N  +NMY KCG +  + Q F  M  RD VSWT +I  Y   G    +LQLF EM   
Sbjct: 251 GVLNLTINMYVKCGCLDGAVQTFARMKRRDVVSWTVMIGAYSQDGKFSLSLQLFREMLLE 310

Query: 429 GVEPDAITVLAILSACNHAGLVKEAETL 456
           G  P+++T ++ILS C    L+++   +
Sbjct: 311 GTAPNSVTFVSILSGCEAPSLLEQGRQI 338



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 86/236 (36%), Positives = 124/236 (52%), Gaps = 2/236 (0%)

Query: 222 MQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTE 281
           M R G+ P RV +  +L AC +L  L  GK I         + D  +    ++MY +C  
Sbjct: 1   MDRRGIPPDRVMIKTLLTACTKLGALEEGKLIQDRLAGTQLELDIGVRNLTINMYVKCG- 59

Query: 282 ALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILS 341
            L  A   F R K +DVV W+ +I  YSQ G  S +++LF  M LE   PNSVT ++ILS
Sbjct: 60  CLDGAVQTFARMKRRDVVSWTVMIGAYSQDGKFSLSLQLFREMLLEGTAPNSVTFVSILS 119

Query: 342 SCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSH-QIFNEMAARDFV 400
            C   S L  G  +H  ++++ L   V + N+L+ MYS+C S   S  Q F  M  RD V
Sbjct: 120 GCEAPSLLEQGRQIHALVVESSLESHVVVANSLLGMYSRCRSWEDSRMQTFARMKRRDVV 179

Query: 401 SWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETL 456
           SWT +I  Y   G    ++QLF EM   G  P+++T ++ILS C    L+++   +
Sbjct: 180 SWTVMIGAYSQDGKFSLSIQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQI 235


>gi|356528519|ref|XP_003532850.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Glycine max]
          Length = 849

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 187/570 (32%), Positives = 310/570 (54%), Gaps = 5/570 (0%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E +L L+ Q +    +Y +  ++ SV+ AC+  +  +  G Q+H   L+ G D D  + N
Sbjct: 237 EVSLKLFNQ-MREGDVYPDRYVISSVLSACSMLEFLEG-GKQIHGYVLRRGFDMDVSVVN 294

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
            +I  Y K  K ++  +LF+ +  +D +SW ++I    QN F+  ++++F EM   G+  
Sbjct: 295 GIIDFYLKCHKVKTGRKLFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKP 354

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
            A     +++ C  +  L+ GRQ+HA  I   + +   FV   L+D+Y+KC     A +V
Sbjct: 355 DAFGCTSVLNSCGSLQALQKGRQVHAYAI-KVNIDNDDFVKNGLIDMYAKCDSLTNARKV 413

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F+ +   N VS+ AMI G          +DLFR M+     PT +T   +L   + L  L
Sbjct: 414 FDLVAAINVVSYNAMIEGYSRQDKLVEALDLFREMRLSLSPPTLLTFVSLLGLSSSLFLL 473

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
                IH      G   D    +AL+ +Y +C+  +  AR++FE    +D+V+W+++  G
Sbjct: 474 ELSSQIHCLIIKFGVSLDSFAGSALIDVYSKCS-CVGDARLVFEEIYDRDIVVWNAMFSG 532

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
           YSQ  +  E++KL+  +++ R++PN  T  A++++ +  + L HG   H  ++K GL+ D
Sbjct: 533 YSQQLENEESLKLYKDLQMSRLKPNEFTFAAVIAAASNIASLRHGQQFHNQVIKMGLDDD 592

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
             + N+L++MY+KCGSI  SH+ F+    RD   W ++IS Y  HG   +AL++F  M  
Sbjct: 593 PFVTNSLVDMYAKCGSIEESHKAFSSTNQRDIACWNSMISTYAQHGDAAKALEVFERMIM 652

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487
            GV+P+ +T + +LSAC+HAGL+      F + M +  I   I+HYAC V LLG++GKI 
Sbjct: 653 EGVKPNYVTFVGLLSACSHAGLLDLGFHHFES-MSKFGIEPGIDHYACMVSLLGRAGKIY 711

Query: 488 DACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCS 547
           +A + V  MP+KP+  +  SL+SACR+ G +E+    A   I  +P ++ +Y LLS + +
Sbjct: 712 EAKEFVKKMPIKPAAVVWRSLLSACRVSGHVELGTYAAEMAISCDPADSGSYILLSNIFA 771

Query: 548 ESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
             G W     V   M    + K  G+S IE
Sbjct: 772 SKGMWASVRMVREKMDMSRVVKEPGWSWIE 801



 Score =  228 bits (582), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 133/412 (32%), Positives = 221/412 (53%), Gaps = 16/412 (3%)

Query: 31  PSVIKACAYAQTHQH---FGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFD 87
           P+++ +  Y + H H    G   H          D  + N+L+  Y+K +    A +LFD
Sbjct: 62  PNILTSHYYKKIHAHIVVLGFHQH----------DVFLVNTLLHAYSKMNLQSDAQKLFD 111

Query: 88  EMPYRDTISWNSIINCFTQNGFYVRSLEMF-REMYLCGFVLKAELLAGIISLCSQIGELE 146
            MP+R+ ++W+S+++ +TQ+G+ V +L +F R M  C       +LA ++  C+Q+G L 
Sbjct: 112 TMPHRNLVTWSSMVSMYTQHGYSVEALLLFCRFMRSCSEKPNEYILASVVRACTQLGNLS 171

Query: 147 LGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGC 206
              Q+H  V V G F   V+V T+L+D Y+K  +   A  +F+ + ++  V+WTA+I+G 
Sbjct: 172 QALQLHGFV-VKGGFVQDVYVGTSLIDFYAKRGYVDEARLIFDGLKVKTTVTWTAIIAGY 230

Query: 207 IDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDH 266
                 +  + LF  M+   V P R  ++ VL AC+ L  L  GK IHGY    GFD D 
Sbjct: 231 AKLGRSEVSLKLFNQMREGDVYPDRYVISSVLSACSMLEFLEGGKQIHGYVLRRGFDMDV 290

Query: 267 HLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRL 326
            +   ++  Y +C + +   R +F R   KDVV W+++I G  Q+    +AM LF  M  
Sbjct: 291 SVVNGIIDFYLKCHK-VKTGRKLFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVR 349

Query: 327 ERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITS 386
           +  +P++    ++L+SC     L  G  VH Y +K  ++ D  + N L++MY+KC S+T+
Sbjct: 350 KGWKPDAFGCTSVLNSCGSLQALQKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTN 409

Query: 387 SHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
           + ++F+ +AA + VS+  +I GY       EAL LF EM+ S   P  +T +
Sbjct: 410 ARKVFDLVAAINVVSYNAMIEGYSRQDKLVEALDLFREMRLSLSPPTLLTFV 461



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 100/300 (33%), Positives = 169/300 (56%), Gaps = 8/300 (2%)

Query: 149 RQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCID 208
           ++IHA ++V G  +  VF+   LL  YSK +    A ++F+ M  RN V+W++M+S    
Sbjct: 71  KKIHAHIVVLGFHQHDVFLVNTLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSMVSMYTQ 130

Query: 209 SQNYDTGIDLF-RAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
                  + LF R M+    KP    L  V+ AC +L +L     +HG+    GF  D +
Sbjct: 131 HGYSVEALLLFCRFMRSCSEKPNEYILASVVRACTQLGNLSQALQLHGFVVKGGFVQDVY 190

Query: 268 LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
           +  +L+  Y +    +  AR+IF+  KVK  V W++II GY++ G    ++KLF++MR  
Sbjct: 191 VGTSLIDFYAK-RGYVDEARLIFDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREG 249

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
            + P+   + ++LS+C+   FL  G  +H Y+++ G + DVS+ N +++ Y KC  + + 
Sbjct: 250 DVYPDRYVISSVLSACSMLEFLEGGKQIHGYVLRRGFDMDVSVVNGIIDFYLKCHKVKTG 309

Query: 388 HQIFNEMAARDFVSWTTLISG---YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
            ++FN +  +D VSWTT+I+G     FHG   +A+ LF+EM   G +PDA    ++L++C
Sbjct: 310 RKLFNRLVDKDVVSWTTMIAGCMQNSFHG---DAMDLFVEMVRKGWKPDAFGCTSVLNSC 366



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 117/215 (54%), Gaps = 3/215 (1%)

Query: 251 KAIHGYAYCCGF-DFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
           K IH +    GF   D  L   L+H Y +       A+ +F+    +++V WSS++  Y+
Sbjct: 71  KKIHAHIVVLGFHQHDVFLVNTLLHAYSK-MNLQSDAQKLFDTMPHRNLVTWSSMVSMYT 129

Query: 310 QSGDLSEAMKLFSR-MRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
           Q G   EA+ LF R MR    +PN   L +++ +CT+   LS  L +H +++K G   DV
Sbjct: 130 QHGYSVEALLLFCRFMRSCSEKPNEYILASVVRACTQLGNLSQALQLHGFVVKGGFVQDV 189

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
            +G +L++ Y+K G +  +  IF+ +  +  V+WT +I+GY   G  E +L+LF +M+E 
Sbjct: 190 YVGTSLIDFYAKRGYVDEARLIFDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREG 249

Query: 429 GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKE 463
            V PD   + ++LSAC+    ++  + +   V++ 
Sbjct: 250 DVYPDRYVISSVLSACSMLEFLEGGKQIHGYVLRR 284


>gi|30689384|ref|NP_194969.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75147159|sp|Q84MA3.1|PP345_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g32430, mitochondrial; Flags: Precursor
 gi|30102674|gb|AAP21255.1| At4g32430 [Arabidopsis thaliana]
 gi|110742925|dbj|BAE99358.1| hypothetical protein [Arabidopsis thaliana]
 gi|332660658|gb|AEE86058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score =  324 bits (831), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 181/534 (33%), Positives = 304/534 (56%), Gaps = 11/534 (2%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           GLQL  T +K+G ++D V+ NS I+MY++      A ++FDEM ++D ISWNS+++  +Q
Sbjct: 193 GLQLQSTVVKTGLESDLVVGNSFITMYSRSGSFRGARRVFDEMSFKDMISWNSLLSGLSQ 252

Query: 107 NG-FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSV 165
            G F   ++ +FR+M   G  L       +I+ C    +L+L RQIH L I  G +E  +
Sbjct: 253 EGTFGFEAVVIFRDMMREGVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRG-YESLL 311

Query: 166 FVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
            V   L+  YSKC        VF QM  RN VSWT MIS      N D  + +F  M+ +
Sbjct: 312 EVGNILMSRYSKCGVLEAVKSVFHQMSERNVVSWTTMIS-----SNKDDAVSIFLNMRFD 366

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
           GV P  VT   ++ A      ++ G  IHG     GF  +  +  + + +Y +  EAL  
Sbjct: 367 GVYPNEVTFVGLINAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITLYAKF-EALED 425

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           A+  FE    ++++ W+++I G++Q+G   EA+K+F     E + PN  T  ++L++   
Sbjct: 426 AKKAFEDITFREIISWNAMISGFAQNGFSHEALKMFLSAAAETM-PNEYTFGSVLNAIAF 484

Query: 346 QSFLS--HGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWT 403
              +S   G   H +++K GLN    + +AL++MY+K G+I  S ++FNEM+ ++   WT
Sbjct: 485 AEDISVKQGQRCHAHLLKLGLNSCPVVSSALLDMYAKRGNIDESEKVFNEMSQKNQFVWT 544

Query: 404 TLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKE 463
           ++IS Y  HG  E  + LF +M +  V PD +T L++L+ACN  G+V +   +FN +++ 
Sbjct: 545 SIISAYSSHGDFETVMNLFHKMIKENVAPDLVTFLSVLTACNRKGMVDKGYEIFNMMIEV 604

Query: 464 KKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEM 523
             +  + EHY+C VD+LG++G++++A +++S +P  P   +L S++ +CR+HG +++   
Sbjct: 605 YNLEPSHEHYSCMVDMLGRAGRLKEAEELMSEVPGGPGESMLQSMLGSCRLHGNVKMGAK 664

Query: 524 LAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +A   +E +PE + +Y  +  + +E   W  A E+ + MR K +SK  GFS I+
Sbjct: 665 VAELAMEMKPELSGSYVQMYNIYAEKEEWDKAAEIRKAMRKKNVSKEAGFSWID 718



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 150/565 (26%), Positives = 280/565 (49%), Gaps = 32/565 (5%)

Query: 9   QTLHLYKQELHPS--GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           + L ++K+ L     G + +   L   +KAC   +     G Q+H  +  SG  +   +S
Sbjct: 58  RALSIFKENLQLGYFGRHMDEVTLCLALKAC---RGDLKRGCQIHGFSTTSGFTSFVCVS 114

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           N+++ MY K  + ++A  +F+ +   D +SWN+I++ F  N     +L     M   G V
Sbjct: 115 NAVMGMYRKAGRFDNALCIFENLVDPDVVSWNTILSGFDDNQI---ALNFVVRMKSAGVV 171

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
             A   +  +S C       LG Q+ + V+  G  E  + V  + + +YS+   +  A R
Sbjct: 172 FDAFTYSTALSFCVGSEGFLLGLQLQSTVVKTG-LESDLVVGNSFITMYSRSGSFRGARR 230

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGID---LFRAMQREGVKPTRVTLTIVLLACAE 243
           VF++M  ++ +SW +++SG   SQ    G +   +FR M REGV+   V+ T V+  C  
Sbjct: 231 VFDEMSFKDMISWNSLLSGL--SQEGTFGFEAVVIFRDMMREGVELDHVSFTSVITTCCH 288

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
             DL+  + IHG     G++    +   LM  Y +C   L   + +F +   ++VV W++
Sbjct: 289 ETDLKLARQIHGLCIKRGYESLLEVGNILMSRYSKCG-VLEAVKSVFHQMSERNVVSWTT 347

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           +I     S +  +A+ +F  MR + + PN VT + ++++      +  GL +H   +K G
Sbjct: 348 MI-----SSNKDDAVSIFLNMRFDGVYPNEVTFVGLINAVKCNEQIKEGLKIHGLCIKTG 402

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
              + S+GN+ + +Y+K  ++  + + F ++  R+ +SW  +ISG+  +G+  EAL++FL
Sbjct: 403 FVSEPSVGNSFITLYAKFEALEDAKKAFEDITFREIISWNAMISGFAQNGFSHEALKMFL 462

Query: 424 EMQESGVEPDAITVLAILSACNHAG--LVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
                 + P+  T  ++L+A   A    VK+ +    +++K    +  +   A  +D+  
Sbjct: 463 SAAAETM-PNEYTFGSVLNAIAFAEDISVKQGQRCHAHLLKLGLNSCPVVSSAL-LDMYA 520

Query: 482 KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAAN--Y 539
           K G I+++ KV + M  K +  + +S++SA   HG  E    L H++I+   EN A    
Sbjct: 521 KRGNIDESEKVFNEMSQK-NQFVWTSIISAYSSHGDFETVMNLFHKMIK---ENVAPDLV 576

Query: 540 TLLSMV--CSESGNWLGAEEVWRVM 562
           T LS++  C+  G      E++ +M
Sbjct: 577 TFLSVLTACNRKGMVDKGYEIFNMM 601


>gi|297834550|ref|XP_002885157.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330997|gb|EFH61416.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 655

 Score =  324 bits (831), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 192/581 (33%), Positives = 320/581 (55%), Gaps = 11/581 (1%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           VS  F E+ L LY + L+ SG+       P V+KACA  +  +  G  +H     S   A
Sbjct: 79  VSNGFAEKALDLYYKMLN-SGVRPTKFTYPFVLKACAGLRAIED-GKLIHSHVKCSNFAA 136

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D  +  +L+  YAK  + + A ++FDEMP RD ++WN++I+ F+ +      + +F +M 
Sbjct: 137 DMYVCTALVDFYAKCGELDMAIKVFDEMPKRDIVAWNAMISGFSLHCCLTDVIGLFLDMR 196

Query: 122 LCGFVLKAEL--LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH 179
                L   L  + G+     + G L  G+ +H      G F   + V T +LD+Y+K  
Sbjct: 197 RSD-CLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRMG-FSNDLVVKTGILDVYAKSK 254

Query: 180 HWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM--QREGVKPTRVTLTIV 237
             + A RVF+    +NEV+W+AMI G ++++      ++F  M    +    T V + ++
Sbjct: 255 CIIYARRVFDSDFKKNEVTWSAMIGGYVENEMIKEAGEVFLQMLVNADMAMVTPVAIGLI 314

Query: 238 LLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKD 297
           L+ CA   DL  G+ +H YA   GF  D  +   ++  Y +   +L  A   F    +KD
Sbjct: 315 LMGCARFGDLSGGRCVHCYAIKAGFILDLTVGNTVISFYAK-YGSLCDAFRQFTEIGLKD 373

Query: 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHC 357
           +V ++S+I G  ++    E+ +LF +M+   I P+  TLL IL++C+  + L HG   H 
Sbjct: 374 IVSYNSLISGCVENCRAEESFRLFHQMKSSGIRPDITTLLGILTACSNLAALGHGSSCHG 433

Query: 358 YIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEE 417
           Y +  G   + SI NALM+MY+KCG +  + ++F+ M  RD VSW T++ G+G HG G+E
Sbjct: 434 YCVVNGYAVNTSICNALMDMYTKCGKLYVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKE 493

Query: 418 ALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK-EKKIALAIEHYACY 476
           AL LF  MQ++GV PD +T+LAILSAC+H+GLV E + LFN++ + +  +   ++HY C 
Sbjct: 494 ALSLFNSMQDTGVHPDEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRLDHYNCM 553

Query: 477 VDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENA 536
            DLL ++G +++A   V+ MP +P  R+L +L+SAC  +  +E+   ++ ++ ++  E  
Sbjct: 554 TDLLARAGYLDEAYDFVNKMPFEPDIRVLGTLLSACWTYKNVELGNEVSKKM-QSLGETT 612

Query: 537 ANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +  LLS   S +  W  A ++    +  GL K+ G+S ++
Sbjct: 613 ESLVLLSNTYSAAERWEDAAKIRMTQKKSGLLKTPGYSWVD 653



 Score =  208 bits (529), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 150/497 (30%), Positives = 259/497 (52%), Gaps = 26/497 (5%)

Query: 68  SLISMYAKFSKPESAYQLFDEMPYR--DTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
           +L  +YA  ++ E A  +FDE+P+   + I+W+ +I  +  NGF  ++L+++ +M   G 
Sbjct: 40  NLTRLYASCNEVELARHVFDEIPHPRINPIAWDLMIRAYVSNGFAEKALDLYYKMLNSGV 99

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
                    ++  C+ +  +E G+ IH+ V    +F   ++V TAL+D Y+KC    +A+
Sbjct: 100 RPTKFTYPFVLKACAGLRAIEDGKLIHSHVKCS-NFAADMYVCTALVDFYAKCGELDMAI 158

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR-EGVKPTRVTLTIVLLACAEL 244
           +VF++M  R+ V+W AMISG          I LF  M+R + + P   T+  +  A    
Sbjct: 159 KVFDEMPKRDIVAWNAMISGFSLHCCLTDVIGLFLDMRRSDCLSPNLSTIVGMFPALGRA 218

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
             LR GKA+HGY    GF  D  +   ++ +Y + ++ +  AR +F+    K+ V WS++
Sbjct: 219 GALREGKAVHGYCTRMGFSNDLVVKTGILDVYAK-SKCIIYARRVFDSDFKKNEVTWSAM 277

Query: 305 IRGYSQSGDLSEAMKLFSRM----RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           I GY ++  + EA ++F +M     +  + P ++ L  IL  C R   LS G  VHCY +
Sbjct: 278 IGGYVENEMIKEAGEVFLQMLVNADMAMVTPVAIGL--ILMGCARFGDLSGGRCVHCYAI 335

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
           KAG   D+++GN +++ Y+K GS+  + + F E+  +D VS+ +LISG   +   EE+ +
Sbjct: 336 KAGFILDLTVGNTVISFYAKYGSLCDAFRQFTEIGLKDIVSYNSLISGCVENCRAEESFR 395

Query: 421 LFLEMQESGVEPDAITVLAILSACNHAGLVKEAET-----LFNNVMKEKKIALAIEHYAC 475
           LF +M+ SG+ PD  T+L IL+AC++   +    +     + N       I  A+     
Sbjct: 396 LFHQMKSSGIRPDITTLLGILTACSNLAALGHGSSCHGYCVVNGYAVNTSICNAL----- 450

Query: 476 YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EP 533
            +D+  K GK+  A +V  TM  K      ++++    IHG  + A  L + + +    P
Sbjct: 451 -MDMYTKCGKLYVAKRVFDTMH-KRDIVSWNTMLFGFGIHGLGKEALSLFNSMQDTGVHP 508

Query: 534 ENAANYTLLSMVCSESG 550
           +      +LS  CS SG
Sbjct: 509 DEVTLLAILS-ACSHSG 524



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 111/400 (27%), Positives = 197/400 (49%), Gaps = 18/400 (4%)

Query: 139 CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDL---YSKCHHWLIALRVFEQMVIR- 194
           C +   L LG+ IH  ++      L++  ST L++L   Y+ C+   +A  VF+++    
Sbjct: 9   CIRSRNLILGQIIHQHLL---KRSLTLSSSTVLVNLTRLYASCNEVELARHVFDEIPHPR 65

Query: 195 -NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAI 253
            N ++W  MI   + +   +  +DL+  M   GV+PT+ T   VL ACA LR + +GK I
Sbjct: 66  INPIAWDLMIRAYVSNGFAEKALDLYYKMLNSGVRPTKFTYPFVLKACAGLRAIEDGKLI 125

Query: 254 HGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGD 313
           H +  C  F  D ++  AL+  Y +C E L  A  +F+    +D+V W+++I G+S    
Sbjct: 126 HSHVKCSNFAADMYVCTALVDFYAKCGE-LDMAIKVFDEMPKRDIVAWNAMISGFSLHCC 184

Query: 314 LSEAMKLFSRMRLER-IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN 372
           L++ + LF  MR    + PN  T++ +  +  R   L  G  VH Y  + G + D+ +  
Sbjct: 185 LTDVIGLFLDMRRSDCLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSNDLVVKT 244

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG--- 429
            ++++Y+K   I  + ++F+    ++ V+W+ +I GY  +   +EA ++FL+M  +    
Sbjct: 245 GILDVYAKSKCIIYARRVFDSDFKKNEVTWSAMIGGYVENEMIKEAGEVFLQMLVNADMA 304

Query: 430 -VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIED 488
            V P AI +  IL  C   G +     +    +K   I L +      +    K G + D
Sbjct: 305 MVTPVAIGL--ILMGCARFGDLSGGRCVHCYAIKAGFI-LDLTVGNTVISFYAKYGSLCD 361

Query: 489 ACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
           A +  + + +K      +SL+S C  + R E +  L HQ+
Sbjct: 362 AFRQFTEIGLKDIVS-YNSLISGCVENCRAEESFRLFHQM 400


>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  324 bits (831), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 189/572 (33%), Positives = 315/572 (55%), Gaps = 6/572 (1%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
            +++ L LY + L   G+  +    P V++ C     +   G ++H   ++ G ++D  +
Sbjct: 187 LFDEALDLYHRMLW-VGVKPDVYTFPCVLRTCG-GMPNLVRGREIHVHVIRYGFESDVDV 244

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
            N+LI+MY K     +A  +FD+MP RD ISWN++I+ + +NG  +  L +F  M     
Sbjct: 245 VNALITMYVKCGDVNTARLVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPV 304

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
                 +  +I+ C  +G+  LGRQIH  V+    F     +  +L+ +YS       A 
Sbjct: 305 DPDLMTMTSVITACELLGDDRLGRQIHGYVL-RTEFGRDPSIHNSLIPMYSSVGLIEEAE 363

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
            VF +   R+ VSWTAMISG  +       ++ ++ M+ EG+ P  +T+ IVL AC+ L 
Sbjct: 364 TVFSRTECRDLVSWTAMISGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLC 423

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
           +L  G  +H  A   G      ++ +L+ MY +C + +  A  IF  T  K++V W+SII
Sbjct: 424 NLDMGMNLHEVAKQKGLVSYSIVANSLIDMYAKC-KCIDKALEIFHSTLEKNIVSWTSII 482

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
            G   +    EA+  F  M + R++PNSVTL+ +LS+C R   L+ G  +H + ++ G++
Sbjct: 483 LGLRINNRCFEALFFFREM-IRRLKPNSVTLVCVLSACARIGALTCGKEIHAHALRTGVS 541

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
           FD  + NA+++MY +CG +  + + F  +   +  SW  L++GY   G G  A +LF  M
Sbjct: 542 FDGFMPNAILDMYVRCGRMEYAWKQFFSVD-HEVTSWNILLTGYAERGKGAHATELFQRM 600

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
            ES V P+ +T ++IL AC+ +G+V E    FN++  +  I   ++HYAC VDLLG+SGK
Sbjct: 601 VESNVSPNEVTFISILCACSRSGMVAEGLEYFNSMKYKYSIMPNLKHYACVVDLLGRSGK 660

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV 545
           +E+A + +  MPMKP   +  +L+++CRIH  +E+ E+ A  + + +  +   Y LLS +
Sbjct: 661 LEEAYEFIQKMPMKPDPAVWGALLNSCRIHHHVELGELAAENIFQDDTTSVGYYILLSNL 720

Query: 546 CSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +++G W    EV ++MR  GL    G S +E
Sbjct: 721 YADNGKWDKVAEVRKMMRQNGLIVDPGCSWVE 752



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 127/417 (30%), Positives = 216/417 (51%), Gaps = 4/417 (0%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPY 91
           ++I+ C + +  +  G +++     S S     + N+L+SM+ +F     A+ +F  M  
Sbjct: 111 ALIRLCEWKRARKE-GSRVYSYVSISMSHLSLQLGNALLSMFVRFGNLVDAWYVFGRMEK 169

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQI 151
           R+  SWN ++  + + G +  +L+++  M   G          ++  C  +  L  GR+I
Sbjct: 170 RNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVYTFPCVLRTCGGMPNLVRGREI 229

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQN 211
           H  VI  G FE  V V  AL+ +Y KC     A  VF++M  R+ +SW AMISG  ++  
Sbjct: 230 HVHVIRYG-FESDVDVVNALITMYVKCGDVNTARLVFDKMPNRDRISWNAMISGYFENGV 288

Query: 212 YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAA 271
              G+ LF  M +  V P  +T+T V+ AC  L D R G+ IHGY     F  D  +  +
Sbjct: 289 CLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRDPSIHNS 348

Query: 272 LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP 331
           L+ MY      +  A  +F RT+ +D+V W+++I GY       +A++ +  M  E I P
Sbjct: 349 LIPMY-SSVGLIEEAETVFSRTECRDLVSWTAMISGYENCLMPQKALETYKMMEAEGIMP 407

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIF 391
           + +T+  +LS+C+    L  G+ +H    + GL     + N+L++MY+KC  I  + +IF
Sbjct: 408 DEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVANSLIDMYAKCKCIDKALEIF 467

Query: 392 NEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG 448
           +    ++ VSWT++I G   +    EAL  F EM    ++P+++T++ +LSAC   G
Sbjct: 468 HSTLEKNIVSWTSIILGLRINNRCFEALFFFREMIRR-LKPNSVTLVCVLSACARIG 523



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 116/447 (25%), Positives = 220/447 (49%), Gaps = 4/447 (0%)

Query: 112 RSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTAL 171
           R++     M+     ++ +    +I LC      + G ++++ V +  S  LS+ +  AL
Sbjct: 89  RAMSYLDSMHELRIPVEDDAYVALIRLCEWKRARKEGSRVYSYVSISMS-HLSLQLGNAL 147

Query: 172 LDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTR 231
           L ++ +  + + A  VF +M  RN  SW  ++ G   +  +D  +DL+  M   GVKP  
Sbjct: 148 LSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDV 207

Query: 232 VTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFE 291
            T   VL  C  + +L  G+ IH +    GF+ D  +  AL+ MY +C + ++ AR++F+
Sbjct: 208 YTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGD-VNTARLVFD 266

Query: 292 RTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSH 351
           +   +D + W+++I GY ++G   E ++LF  M    ++P+ +T+ +++++C        
Sbjct: 267 KMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRL 326

Query: 352 GLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGF 411
           G  +H Y+++     D SI N+L+ MYS  G I  +  +F+    RD VSWT +ISGY  
Sbjct: 327 GRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYEN 386

Query: 412 HGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIE 471
               ++AL+ +  M+  G+ PD IT+  +LSAC+    +     L + V K+K +     
Sbjct: 387 CLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNL-HEVAKQKGLVSYSI 445

Query: 472 HYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA 531
                +D+  K   I+ A ++  +  ++ +    +S++   RI+ R   A     ++I  
Sbjct: 446 VANSLIDMYAKCKCIDKALEIFHST-LEKNIVSWTSIILGLRINNRCFEALFFFREMIRR 504

Query: 532 EPENAANYTLLSMVCSESGNWLGAEEV 558
              N+     +   C+  G     +E+
Sbjct: 505 LKPNSVTLVCVLSACARIGALTCGKEI 531



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 118/238 (49%), Gaps = 1/238 (0%)

Query: 211 NYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSA 270
           N D  +    +M    +         ++  C   R  + G  ++ Y           L  
Sbjct: 86  NLDRAMSYLDSMHELRIPVEDDAYVALIRLCEWKRARKEGSRVYSYVSISMSHLSLQLGN 145

Query: 271 ALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE 330
           AL+ M+      L  A  +F R + +++  W+ ++ GY+++G   EA+ L+ RM    ++
Sbjct: 146 ALLSMFVRFGN-LVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVK 204

Query: 331 PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQI 390
           P+  T   +L +C     L  G  +H ++++ G   DV + NAL+ MY KCG + ++  +
Sbjct: 205 PDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLV 264

Query: 391 FNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG 448
           F++M  RD +SW  +ISGY  +G   E L+LF  M +  V+PD +T+ ++++AC   G
Sbjct: 265 FDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLG 322



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 64/133 (48%)

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
           G+L  AM     M   RI       +A++  C  +     G  V+ Y+  +  +  + +G
Sbjct: 85  GNLDRAMSYLDSMHELRIPVEDDAYVALIRLCEWKRARKEGSRVYSYVSISMSHLSLQLG 144

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
           NAL++M+ + G++  +  +F  M  R+  SW  L+ GY   G  +EAL L+  M   GV+
Sbjct: 145 NALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVK 204

Query: 432 PDAITVLAILSAC 444
           PD  T   +L  C
Sbjct: 205 PDVYTFPCVLRTC 217


>gi|449448940|ref|XP_004142223.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 847

 Score =  324 bits (830), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 187/571 (32%), Positives = 313/571 (54%), Gaps = 8/571 (1%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           + L LY   L   G+  +   +  VI+ACA     +  G+QLH  A+K     D  I N+
Sbjct: 245 KALKLYSSML-IEGIKFDAVTMLVVIQACAEYGCLR-LGMQLHQLAIKFNLINDLFILNA 302

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           L++MY+     ES++ LF+ +P  D   WNS+I+ +   GF+  ++ +F +M L      
Sbjct: 303 LLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGFGFHAEAIALFIKMRLERIKED 362

Query: 129 AELLAGIISLCSQIGELEL-GRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
              +A ++SLC+ + +  + GR +HA  +  G  EL  ++  ALL +Y K +    A  V
Sbjct: 363 VRTIAIMLSLCNDLNDGSIWGRGLHAHAMKSG-IELDAYLGNALLSMYVKHNQITAAQYV 421

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           FE+M   + +SW  MIS    S       +LF  M    +K    T+  +L  C +  DL
Sbjct: 422 FEKMRGLDVISWNTMISAFAQSMFRAKAFELFLMMCESEIKFNSYTIVSLLAFCKDGSDL 481

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
             G++IHG+A   G + +  L+ +L  MY  C +    A  +F R   +D+V W+S+I  
Sbjct: 482 VFGRSIHGFAIKNGLEINTSLNTSLTEMYINCGDE-RAATNMFTRCPQRDLVSWNSLISS 540

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK--AGLN 365
           Y ++ +  +A+ LF+ M +  +EPNSVT++ IL+SCT+ + L  G  +H Y  +    L 
Sbjct: 541 YIKNDNAGKALLLFNHM-ISELEPNSVTIINILTSCTQLAHLPLGQCLHAYTTRREVSLE 599

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            D S+ NA + MY++CG +  + +IF  +  R  VSW  +I+GYG HG G +A   F +M
Sbjct: 600 MDASLANAFITMYARCGKLQYAEKIFCTLQTRSIVSWNAMITGYGMHGRGRDATLAFAQM 659

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
            + G +P+ ++  ++LSAC+H+GL      LF++++++  IA  + HY C VDLLG+ G 
Sbjct: 660 LDDGFKPNNVSFASVLSACSHSGLTVTGLQLFHSMVRDFGIAPQLTHYGCMVDLLGRGGH 719

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV 545
             +A   +++MP++P   I  +L+S+C+I    ++ E +  +L+E EP N  N+ LLS +
Sbjct: 720 FSEAIAFINSMPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNI 779

Query: 546 CSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
            + +G W    ++ + +R +GL K  G S I
Sbjct: 780 YAAAGLWSEVVQIRKWLRERGLGKPPGTSWI 810



 Score =  225 bits (574), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 134/429 (31%), Positives = 235/429 (54%), Gaps = 4/429 (0%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           ++   G+  ++A +P V+KAC       + G+++H          D  +  +L+  Y K 
Sbjct: 50  QMESLGITPDSATMPLVLKACGRLNAIGN-GVRIHSFIRGLDLINDVRVGTALVDFYCKC 108

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
                A ++F EMP RD +SWN++I+ +     Y  ++ +F EM   G    +  +  ++
Sbjct: 109 GLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEAVLLFVEMKKAGLTPNSRTVVALL 168

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
             C ++ EL LG++IH   + +G F++  +V TAL+  Y +    +++ RVF  M++RN 
Sbjct: 169 LACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFYMRFDA-VLSHRVFSLMLVRNI 227

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           VSW A+I+G ++  +    + L+ +M  EG+K   VT+ +V+ ACAE   LR G  +H  
Sbjct: 228 VSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRLGMQLHQL 287

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
           A       D  +  AL++MY +   +L  +  +F      D  +W+S+I  Y   G  +E
Sbjct: 288 AIKFNLINDLFILNALLNMYSD-NGSLESSWALFNAVPTSDAALWNSMISSYIGFGFHAE 346

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLS-HGLGVHCYIMKAGLNFDVSIGNALM 375
           A+ LF +MRLERI+ +  T+  +LS C   +  S  G G+H + MK+G+  D  +GNAL+
Sbjct: 347 AIALFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIWGRGLHAHAMKSGIELDAYLGNALL 406

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           +MY K   IT++  +F +M   D +SW T+IS +    +  +A +LFL M ES ++ ++ 
Sbjct: 407 SMYVKHNQITAAQYVFEKMRGLDVISWNTMISAFAQSMFRAKAFELFLMMCESEIKFNSY 466

Query: 436 TVLAILSAC 444
           T++++L+ C
Sbjct: 467 TIVSLLAFC 475



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/352 (33%), Positives = 190/352 (53%), Gaps = 8/352 (2%)

Query: 97  WNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVI 156
           WNSII   T+       L  + +M   G    +  +  ++  C ++  +  G +IH+ + 
Sbjct: 28  WNSIIKHHTKLKNDHAILSTYTQMESLGITPDSATMPLVLKACGRLNAIGNGVRIHSFI- 86

Query: 157 VDGSFEL--SVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDT 214
                +L   V V TAL+D Y KC     A +VF +M  R+ VSW A+ISG +    Y  
Sbjct: 87  --RGLDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKE 144

Query: 215 GIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG-FDFDHHLSAALM 273
            + LF  M++ G+ P   T+  +LLAC E+ +LR G+ IHGY    G FD D ++  AL+
Sbjct: 145 AVLLFVEMKKAGLTPNSRTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALV 204

Query: 274 HMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNS 333
             Y      L  +  +F    V+++V W++II G+   GD ++A+KL+S M +E I+ ++
Sbjct: 205 GFYMRFDAVL--SHRVFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDA 262

Query: 334 VTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNE 393
           VT+L ++ +C     L  G+ +H   +K  L  D+ I NAL+NMYS  GS+ SS  +FN 
Sbjct: 263 VTMLVVIQACAEYGCLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNA 322

Query: 394 MAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
           +   D   W ++IS Y   G+  EA+ LF++M+   ++ D  T+  +LS CN
Sbjct: 323 VPTSDAALWNSMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCN 374



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 132/254 (51%), Gaps = 3/254 (1%)

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258
           W ++I      +N    +  +  M+  G+ P   T+ +VL AC  L  + NG  IH +  
Sbjct: 28  WNSIIKHHTKLKNDHAILSTYTQMESLGITPDSATMPLVLKACGRLNAIGNGVRIHSFIR 87

Query: 259 CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAM 318
                 D  +  AL+  YC+C      +++  E  + +D+V W+++I GY       EA+
Sbjct: 88  GLDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPE-RDLVSWNALISGYVGCLCYKEAV 146

Query: 319 KLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL-NFDVSIGNALMNM 377
            LF  M+   + PNS T++A+L +C     L  G  +H Y ++ GL + D  +G AL+  
Sbjct: 147 LLFVEMKKAGLTPNSRTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGF 206

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           Y +  ++ S H++F+ M  R+ VSW  +I+G+   G   +AL+L+  M   G++ DA+T+
Sbjct: 207 YMRFDAVLS-HRVFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTM 265

Query: 438 LAILSACNHAGLVK 451
           L ++ AC   G ++
Sbjct: 266 LVVIQACAEYGCLR 279


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  324 bits (830), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 192/620 (30%), Positives = 329/620 (53%), Gaps = 65/620 (10%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           +G   +   LP V+KAC    +++  G   H     +G +++  I N+L++MY++    E
Sbjct: 156 AGTRPDHFTLPHVLKACGELPSYR-CGSAFHGLICCNGFESNVFICNALVAMYSRCGSLE 214

Query: 81  SAYQLFDEMPYR---DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS 137
            A  +FDE+  R   D ISWNSI++   ++     +L++F +M L          + IIS
Sbjct: 215 EASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIIS 274

Query: 138 L------CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM 191
           +      C  +  +   +++H   I +G+F   VFV  AL+D Y+KC     A++VF  M
Sbjct: 275 IVNILPACGSLKAVPQTKEVHGNAIRNGTFP-DVFVGNALIDAYAKCGLMENAVKVFNMM 333

Query: 192 VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK----------------------- 228
             ++ VSW AM++G   S N++   +LF+ M++E +                        
Sbjct: 334 EFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEAL 393

Query: 229 ------------PTRVTLTIVLLACAELRDLRNGKAIHGYAY--CC--------GFDFDH 266
                       P  VT+  VL ACA L     G  IH Y+   C         G D D 
Sbjct: 394 NLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDL 453

Query: 267 HLSAALMHMYCECTEALHPARIIFERTKV--KDVVIWSSIIRGYSQSGDLSEAMKLFSRM 324
            +  AL+ MY +C  +   AR IF+   +  ++VV W+ +I G++Q GD ++A+KLF  M
Sbjct: 454 MVYNALIDMYSKC-RSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEM 512

Query: 325 RLER--IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS---IGNALMNMYS 379
             E   + PN+ T+  IL +C   + +  G  +H Y+++    ++ S   + N L++MYS
Sbjct: 513 ISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHH-RYESSAYFVANCLIDMYS 571

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           KCG + ++  +F+ M+ +  +SWT++++GYG HG G EAL +F +M+++G  PD IT L 
Sbjct: 572 KCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLV 631

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           +L AC+H G+V +  + F+++  +  +    EHYAC +DLL +SG+++ A + V  MPM+
Sbjct: 632 VLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPME 691

Query: 500 PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVW 559
           P+  +  +L+SACR+H  +E+AE   ++L+E   EN  +YTL+S + + +G W     + 
Sbjct: 692 PTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIR 751

Query: 560 RVMRAKGLSKSYGFSRIENE 579
            +M+  G+ K  G S ++ +
Sbjct: 752 HLMKKSGIKKRPGCSWVQGQ 771



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 125/483 (25%), Positives = 217/483 (44%), Gaps = 74/483 (15%)

Query: 6   FYEQTLHLYKQELHP-SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPV 64
           F + TL ++++  +  S + S   ILP+     A  QT +     +H  A+++G+  D  
Sbjct: 254 FSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKE-----VHGNAIRNGTFPDVF 308

Query: 65  ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLE--------- 115
           + N+LI  YAK    E+A ++F+ M ++D +SWN+++  ++Q+G +  + E         
Sbjct: 309 VGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKEN 368

Query: 116 --------------------------MFREMYLCGFVLKAELLAGIISLCSQIGELELGR 149
                                     +FR+M   G +     +  ++S C+ +G    G 
Sbjct: 369 IPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGT 428

Query: 150 QIHA------LVIVDGSF---ELSVFVSTALLDLYSKCHHWLIALRVFEQMVI--RNEVS 198
           +IHA      L+ +D  F   +  + V  AL+D+YSKC  +  A  +F+ + +  RN V+
Sbjct: 429 EIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVT 488

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQRE--GVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           WT MI G     + +  + LF  M  E  GV P   T++ +L+ACA L  +R GK IH Y
Sbjct: 489 WTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAY 548

Query: 257 AYCCGFDFDHH--------LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
                    HH        ++  L+ MY +C + +  AR +F+    K  + W+S++ GY
Sbjct: 549 V------LRHHRYESSAYFVANCLIDMYSKCGD-VDTARHVFDSMSQKSAISWTSMMTGY 601

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG-VHCYIMKAGLNFD 367
              G  SEA+ +F +MR     P+ +T L +L +C+    +  GL          GL   
Sbjct: 602 GMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPR 661

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDF-VSWTTLISGYGFHG---YGEEALQLFL 423
                  +++ ++ G +  + +   +M      V W  L+S    H      E AL   +
Sbjct: 662 AEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLV 721

Query: 424 EMQ 426
           EM 
Sbjct: 722 EMN 724



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 154/304 (50%), Gaps = 10/304 (3%)

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           + T ++  Y  C     AL V E++     V W  +I   I     D+ I++   M R G
Sbjct: 98  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 157

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
            +P   TL  VL AC EL   R G A HG   C GF+ +  +  AL+ MY  C  +L  A
Sbjct: 158 TRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCG-SLEEA 216

Query: 287 RIIFE---RTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNS------VTLL 337
            +IF+   +  + DV+ W+SI+  + +S +   A+ LFS+M L   E  +      ++++
Sbjct: 217 SMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIV 276

Query: 338 AILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR 397
            IL +C     +     VH   ++ G   DV +GNAL++ Y+KCG + ++ ++FN M  +
Sbjct: 277 NILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 336

Query: 398 DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLF 457
           D VSW  +++GY   G  E A +LF  M++  +  D +T  A+++  +  G   EA  LF
Sbjct: 337 DVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLF 396

Query: 458 NNVM 461
             ++
Sbjct: 397 RQMI 400



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 139/567 (24%), Positives = 241/567 (42%), Gaps = 83/567 (14%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKS----------G 58
           + L+L++Q +  SG   N   + SV+ ACA        G ++H  +LK+          G
Sbjct: 391 EALNLFRQMIF-SGSLPNCVTIISVLSACASLGAFSQ-GTEIHAYSLKNCLLTLDNDFGG 448

Query: 59  SDADPVISNSLISMYAKFSKPESAYQLFDEMPY--RDTISWNSIINCFTQNGFYVRSLEM 116
            D D ++ N+LI MY+K    ++A  +FD++P   R+ ++W  +I    Q G    +L++
Sbjct: 449 EDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKL 508

Query: 117 FREMY--LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSV-FVSTALLD 173
           F EM     G    A  ++ I+  C+ +  + +G+QIHA V+    +E S  FV+  L+D
Sbjct: 509 FVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLID 568

Query: 174 LYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVT 233
           +YSKC     A  VF+ M  ++ +SWT+M++G          +D+F  M++ G  P  +T
Sbjct: 569 MYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDIT 628

Query: 234 LTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERT 293
             +VL AC+       G    G +Y      D+ L+    H  C                
Sbjct: 629 FLVVLYACSHC-----GMVDQGLSYFDSMSADYGLTPRAEHYACA--------------- 668

Query: 294 KVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGL 353
                      I   ++SG L +A +    M +   EP +V  +A+LS+C   S +   L
Sbjct: 669 -----------IDLLARSGRLDKAWRTVKDMPM---EPTAVVWVALLSACRVHSNVE--L 712

Query: 354 GVHCYIMKAGLNFDVSIGNALM-NMYSKCGSITSSHQIFNEM-----AARDFVSWTTLIS 407
             H       +N +      L+ N+Y+  G      +I + M       R   SW     
Sbjct: 713 AEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQK 772

Query: 408 GYGFHGYGEEALQLFLEMQESGVEPDAITVL-AILSACNHAGLVKEAETLFNNVMKEKKI 466
           G             F+  +   + P    +L +++      G V E     ++V +E+K 
Sbjct: 773 GTA---------SFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKN 823

Query: 467 ALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLE-VAEMLA 525
            L +EH          S K+  A  +++T P  P  RI  +L      H     +++++ 
Sbjct: 824 NLLVEH----------SEKLALAYGLLTTSPGCP-IRITKNLRVCGDCHSAFTYISKIVD 872

Query: 526 HQLIEAEPENAANYTLLSMVCSESGNW 552
           H+++  +P    ++   S  CS  G W
Sbjct: 873 HEIVVRDPSRFHHFKNGS--CSCGGYW 897


>gi|4049345|emb|CAA22570.1| putative protein [Arabidopsis thaliana]
 gi|7270147|emb|CAB79960.1| putative protein [Arabidopsis thaliana]
          Length = 688

 Score =  324 bits (830), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 181/535 (33%), Positives = 304/535 (56%), Gaps = 11/535 (2%)

Query: 46  FGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT 105
            GLQL  T +K+G ++D V+ NS I+MY++      A ++FDEM ++D ISWNS+++  +
Sbjct: 117 LGLQLQSTVVKTGLESDLVVGNSFITMYSRSGSFRGARRVFDEMSFKDMISWNSLLSGLS 176

Query: 106 QNG-FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELS 164
           Q G F   ++ +FR+M   G  L       +I+ C    +L+L RQIH L I  G +E  
Sbjct: 177 QEGTFGFEAVVIFRDMMREGVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRG-YESL 235

Query: 165 VFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR 224
           + V   L+  YSKC        VF QM  RN VSWT MIS      N D  + +F  M+ 
Sbjct: 236 LEVGNILMSRYSKCGVLEAVKSVFHQMSERNVVSWTTMIS-----SNKDDAVSIFLNMRF 290

Query: 225 EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
           +GV P  VT   ++ A      ++ G  IHG     GF  +  +  + + +Y +  EAL 
Sbjct: 291 DGVYPNEVTFVGLINAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITLYAKF-EALE 349

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
            A+  FE    ++++ W+++I G++Q+G   EA+K+F     E + PN  T  ++L++  
Sbjct: 350 DAKKAFEDITFREIISWNAMISGFAQNGFSHEALKMFLSAAAETM-PNEYTFGSVLNAIA 408

Query: 345 RQSFLS--HGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSW 402
               +S   G   H +++K GLN    + +AL++MY+K G+I  S ++FNEM+ ++   W
Sbjct: 409 FAEDISVKQGQRCHAHLLKLGLNSCPVVSSALLDMYAKRGNIDESEKVFNEMSQKNQFVW 468

Query: 403 TTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462
           T++IS Y  HG  E  + LF +M +  V PD +T L++L+ACN  G+V +   +FN +++
Sbjct: 469 TSIISAYSSHGDFETVMNLFHKMIKENVAPDLVTFLSVLTACNRKGMVDKGYEIFNMMIE 528

Query: 463 EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAE 522
              +  + EHY+C VD+LG++G++++A +++S +P  P   +L S++ +CR+HG +++  
Sbjct: 529 VYNLEPSHEHYSCMVDMLGRAGRLKEAEELMSEVPGGPGESMLQSMLGSCRLHGNVKMGA 588

Query: 523 MLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +A   +E +PE + +Y  +  + +E   W  A E+ + MR K +SK  GFS I+
Sbjct: 589 KVAELAMEMKPELSGSYVQMYNIYAEKEEWDKAAEIRKAMRKKNVSKEAGFSWID 643



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 142/525 (27%), Positives = 264/525 (50%), Gaps = 27/525 (5%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G Q+H  +  SG  +   +SN+++ MY K  + ++A  +F+ +   D +SWN+I++ F  
Sbjct: 20  GCQIHGFSTTSGFTSFVCVSNAVMGMYRKAGRFDNALCIFENLVDPDVVSWNTILSGFDD 79

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           N     +L     M   G V  A   +  +S C       LG Q+ + V+  G  E  + 
Sbjct: 80  NQI---ALNFVVRMKSAGVVFDAFTYSTALSFCVGSEGFLLGLQLQSTVVKTG-LESDLV 135

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGID---LFRAMQ 223
           V  + + +YS+   +  A RVF++M  ++ +SW +++SG   SQ    G +   +FR M 
Sbjct: 136 VGNSFITMYSRSGSFRGARRVFDEMSFKDMISWNSLLSGL--SQEGTFGFEAVVIFRDMM 193

Query: 224 REGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEAL 283
           REGV+   V+ T V+  C    DL+  + IHG     G++    +   LM  Y +C   L
Sbjct: 194 REGVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRGYESLLEVGNILMSRYSKCG-VL 252

Query: 284 HPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC 343
              + +F +   ++VV W+++I     S +  +A+ +F  MR + + PN VT + ++++ 
Sbjct: 253 EAVKSVFHQMSERNVVSWTTMI-----SSNKDDAVSIFLNMRFDGVYPNEVTFVGLINAV 307

Query: 344 TRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWT 403
                +  GL +H   +K G   + S+GN+ + +Y+K  ++  + + F ++  R+ +SW 
Sbjct: 308 KCNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITLYAKFEALEDAKKAFEDITFREIISWN 367

Query: 404 TLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG--LVKEAETLFNNVM 461
            +ISG+  +G+  EAL++FL      + P+  T  ++L+A   A    VK+ +    +++
Sbjct: 368 AMISGFAQNGFSHEALKMFLSAAAETM-PNEYTFGSVLNAIAFAEDISVKQGQRCHAHLL 426

Query: 462 KEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA 521
           K    +  +   A  +D+  K G I+++ KV + M  K +  + +S++SA   HG  E  
Sbjct: 427 KLGLNSCPVVSSA-LLDMYAKRGNIDESEKVFNEMSQK-NQFVWTSIISAYSSHGDFETV 484

Query: 522 EMLAHQLIEAEPENAAN--YTLLSMV--CSESGNWLGAEEVWRVM 562
             L H++I+   EN A    T LS++  C+  G      E++ +M
Sbjct: 485 MNLFHKMIK---ENVAPDLVTFLSVLTACNRKGMVDKGYEIFNMM 526



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 156/339 (46%), Gaps = 11/339 (3%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           +++   G+  +     SVI  C + +T      Q+H   +K G ++   + N L+S Y+K
Sbjct: 190 RDMMREGVELDHVSFTSVITTCCH-ETDLKLARQIHGLCIKRGYESLLEVGNILMSRYSK 248

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
               E+   +F +M  R+ +SW ++I+    +     ++ +F  M   G         G+
Sbjct: 249 CGVLEAVKSVFHQMSERNVVSWTTMISSNKDD-----AVSIFLNMRFDGVYPNEVTFVGL 303

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           I+      +++ G +IH L I  G F     V  + + LY+K      A + FE +  R 
Sbjct: 304 INAVKCNEQIKEGLKIHGLCIKTG-FVSEPSVGNSFITLYAKFEALEDAKKAFEDITFRE 362

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL--RNGKAI 253
            +SW AMISG   +      + +F +   E + P   T   VL A A   D+  + G+  
Sbjct: 363 IISWNAMISGFAQNGFSHEALKMFLSAAAETM-PNEYTFGSVLNAIAFAEDISVKQGQRC 421

Query: 254 HGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGD 313
           H +    G +    +S+AL+ MY +    +  +  +F     K+  +W+SII  YS  GD
Sbjct: 422 HAHLLKLGLNSCPVVSSALLDMYAK-RGNIDESEKVFNEMSQKNQFVWTSIISAYSSHGD 480

Query: 314 LSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHG 352
               M LF +M  E + P+ VT L++L++C R+  +  G
Sbjct: 481 FETVMNLFHKMIKENVAPDLVTFLSVLTACNRKGMVDKG 519



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 118/226 (52%), Gaps = 7/226 (3%)

Query: 232 VTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFE 291
           VTL + L AC    DL+ G  IHG++   GF     +S A+M MY +       A  IFE
Sbjct: 4   VTLCLALKACR--GDLKRGCQIHGFSTTSGFTSFVCVSNAVMGMYRKAGR-FDNALCIFE 60

Query: 292 RTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSH 351
                DVV W++I+ G+    D   A+    RM+   +  ++ T    LS C        
Sbjct: 61  NLVDPDVVSWNTILSGFD---DNQIALNFVVRMKSAGVVFDAFTYSTALSFCVGSEGFLL 117

Query: 352 GLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGF 411
           GL +   ++K GL  D+ +GN+ + MYS+ GS   + ++F+EM+ +D +SW +L+SG   
Sbjct: 118 GLQLQSTVVKTGLESDLVVGNSFITMYSRSGSFRGARRVFDEMSFKDMISWNSLLSGLSQ 177

Query: 412 HG-YGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETL 456
            G +G EA+ +F +M   GVE D ++  ++++ C H   +K A  +
Sbjct: 178 EGTFGFEAVVIFRDMMREGVELDHVSFTSVITTCCHETDLKLARQI 223


>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
 gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
          Length = 688

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 186/552 (33%), Positives = 300/552 (54%), Gaps = 44/552 (7%)

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG--FYVRSLEMFREMYLCG 124
           N+L+S YA+  +P+ A  LF+ +P  D  S+N+++    ++G      +L     M+   
Sbjct: 87  NALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRFLAAMHADD 146

Query: 125 FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
           FVL A   A  +S C+   +   G Q+H LV      +  V + +AL+D+Y+KC     A
Sbjct: 147 FVLNAYSFASALSACAAEKDSRTGEQVHGLVARSPHAD-DVHIRSALVDMYAKCERPEDA 205

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTG--IDLFRAMQREGVKPTRVTLTIVLLACA 242
            RVF+ M  RN VSW ++I+ C + QN   G  + LF  M   G  P  VTL+ V+ ACA
Sbjct: 206 RRVFDAMPERNVVSWNSLIT-CYE-QNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACA 263

Query: 243 ELRDLRNGKAIHGYAYCCG-FDFDHHLSAALMHMYCEC---------------------- 279
            L   R G+ +H +   C     D  L+ AL+ MY +C                      
Sbjct: 264 GLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSET 323

Query: 280 --------TEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP 331
                   +  +  A+++F +   K+V+ W+ +I  Y+Q+G+  EA++LF +++ + I P
Sbjct: 324 SILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWP 383

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD------VSIGNALMNMYSKCGSIT 385
              T   +L++C   + L  G   H +++K G  FD      V +GN+L++MY K GSI 
Sbjct: 384 THYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSID 443

Query: 386 SSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
              ++F  MAARD VSW  +I GY  +G  ++AL LF  M  S   PD++T++ +LSAC 
Sbjct: 444 DGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACG 503

Query: 446 HAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRIL 505
           H+GLV E    F+++ ++  I  + +HY C VDLLG++G +++A ++++ MPM+P + + 
Sbjct: 504 HSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELINDMPMEPDSVLW 563

Query: 506 SSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAK 565
           +SL+ ACR+H  +E+ E  A +L E +P+N+  Y LLS + +E G W     V R M+ +
Sbjct: 564 ASLLGACRLHKNVELGEWTAGRLFELDPQNSGPYVLLSNMYAEMGKWAEVFRVRRSMKDR 623

Query: 566 GLSKSYGFSRIE 577
           G+SK  G S IE
Sbjct: 624 GVSKQPGCSWIE 635



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 130/456 (28%), Positives = 212/456 (46%), Gaps = 46/456 (10%)

Query: 18  LHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFS 77
           +H      N     S + ACA A+     G Q+H    +S    D  I ++L+ MYAK  
Sbjct: 142 MHADDFVLNAYSFASALSACA-AEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCE 200

Query: 78  KPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS 137
           +PE A ++FD MP R+ +SWNS+I C+ QNG    +L +F EM   GF      L+ ++S
Sbjct: 201 RPEDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMS 260

Query: 138 LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKC-HHWLI------------- 183
            C+ +     GRQ+HA ++        + ++ AL+D+Y+KC   W               
Sbjct: 261 ACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIV 320

Query: 184 -----------------ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
                            A  VF QMV +N ++W  +I+    +   +  I LF  ++R+ 
Sbjct: 321 SETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDS 380

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDH------HLSAALMHMYCECT 280
           + PT  T   VL AC  + DL+ G+  H +    GF FD        +  +L+ MY + T
Sbjct: 381 IWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLK-T 439

Query: 281 EALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAIL 340
            ++     +FER   +D V W+++I GY+Q+G   +A+ LF RM      P+SVT++ +L
Sbjct: 440 GSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVL 499

Query: 341 SSCTRQSFLSHGLG-VHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR-D 398
           S+C     +  G    H      G+         ++++  + G +  + ++ N+M    D
Sbjct: 500 SACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELINDMPMEPD 559

Query: 399 FVSWTTLISGYGFHGYGE----EALQLF-LEMQESG 429
            V W +L+     H   E     A +LF L+ Q SG
Sbjct: 560 SVLWASLLGACRLHKNVELGEWTAGRLFELDPQNSG 595



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 125/492 (25%), Positives = 210/492 (42%), Gaps = 84/492 (17%)

Query: 135 IISLCSQIGELELGRQIHALV----IVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQ 190
           +  L      L   R  HA +    +   +F L+  VST     Y++      A RVF++
Sbjct: 23  LADLLRSAPNLSGARAAHARILKSPVAGETFLLNTLVST-----YARLGRLRDARRVFDE 77

Query: 191 MVIRNEVSWTAMISGCIDSQNYDTGIDLFR---------------AMQREGVKPTRVTLT 235
           + +RN  S+ A++S        D    LF                A+ R G       L 
Sbjct: 78  IPLRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALR 137

Query: 236 IV------------------LLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYC 277
            +                  L ACA  +D R G+ +HG         D H+ +AL+ MY 
Sbjct: 138 FLAAMHADDFVLNAYSFASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYA 197

Query: 278 ECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLL 337
           +C E    AR +F+    ++VV W+S+I  Y Q+G + EA+ LF  M      P+ VTL 
Sbjct: 198 KC-ERPEDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLS 256

Query: 338 AILSSCTRQSFLSHGLGVHCYIMKAG-LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA 396
           +++S+C   +    G  VH +++K   L  D+ + NAL++MY+KCG    +  IF+ M +
Sbjct: 257 SVMSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPS 316

Query: 397 RDFVS-------------------------------WTTLISGYGFHGYGEEALQLFLEM 425
           R  VS                               W  LI+ Y  +G  EEA++LF+++
Sbjct: 317 RSIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQL 376

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK-KIALAIEHYA----CYVDLL 480
           +   + P   T   +L+AC +   ++  +    +V+KE  +     E         VD+ 
Sbjct: 377 KRDSIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMY 436

Query: 481 GKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYT 540
            K+G I+D  KV   M  + +    + +V   + +GR + A  L  +++    EN  + T
Sbjct: 437 LKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQ-NGRAKDALHLFERML-CSNENPDSVT 494

Query: 541 LLSMV--CSESG 550
           ++ ++  C  SG
Sbjct: 495 MIGVLSACGHSG 506



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 94/215 (43%), Gaps = 9/215 (4%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSG------SDA 61
           E+ + L+ Q L    ++       +V+ AC      Q  G Q H   LK G       ++
Sbjct: 367 EEAIRLFVQ-LKRDSIWPTHYTYGNVLNACGNIADLQ-LGQQAHVHVLKEGFRFDFGPES 424

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D  + NSL+ MY K    +   ++F+ M  RD +SWN++I  + QNG    +L +F  M 
Sbjct: 425 DVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERML 484

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
                  +  + G++S C   G ++ GR+    +  D     S    T ++DL  +  H 
Sbjct: 485 CSNENPDSVTMIGVLSACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHL 544

Query: 182 LIALRVFEQMVIR-NEVSWTAMISGCIDSQNYDTG 215
             A  +   M +  + V W +++  C   +N + G
Sbjct: 545 KEAEELINDMPMEPDSVLWASLLGACRLHKNVELG 579



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 96/213 (45%), Gaps = 18/213 (8%)

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
           LS     H  I+K+ +  +  + N L++ Y++ G +  + ++F+E+  R+  S+  L+S 
Sbjct: 33  LSGARAAHARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLSA 92

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETL-FNNVMKEKKIA 467
           Y   G  +EA  LF    E+  +PD  +  A+++A    G    A+ L F   M      
Sbjct: 93  YARLGRPDEARALF----EAIPDPDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFV 148

Query: 468 LAIEHY-----ACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAE 522
           L    +     AC  +   ++G  E    +V+  P      I S+LV    ++ + E  E
Sbjct: 149 LNAYSFASALSACAAEKDSRTG--EQVHGLVARSPHADDVHIRSALVD---MYAKCERPE 203

Query: 523 MLAHQLIEAEPE-NAANYTLLSMVCSESGNWLG 554
             A ++ +A PE N  ++  L + C E    +G
Sbjct: 204 D-ARRVFDAMPERNVVSWNSL-ITCYEQNGPVG 234


>gi|449502637|ref|XP_004161700.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 847

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 187/571 (32%), Positives = 313/571 (54%), Gaps = 8/571 (1%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           + L LY   L   G+  +   +  VI+ACA     +  G+QLH  A+K     D  I N+
Sbjct: 245 KALKLYSSML-IEGIKFDAVTMLVVIQACAEYGCLR-LGMQLHQLAIKFNLINDLFILNA 302

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           L++MY+     ES++ LF+ +P  D   WNS+I+ +   GF+  ++ +F +M L      
Sbjct: 303 LLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGFGFHAEAIALFIKMRLERIKED 362

Query: 129 AELLAGIISLCSQIGELEL-GRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
              +A ++SLC+ + +  + GR +HA  +  G  EL  ++  ALL +Y K +    A  V
Sbjct: 363 VRTIAIMLSLCNDLNDGSIWGRGLHAHAMKSG-IELDAYLGNALLSMYVKHNQITAAQYV 421

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           FE+M   + +SW  MIS    S       +LF  M    +K    T+  +L  C +  DL
Sbjct: 422 FEKMRGLDVISWNTMISAFAQSMFRAKAFELFLMMCESEIKFNSYTIVSLLAFCKDGSDL 481

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
             G++IHG+A   G + +  L+ +L  MY  C +    A  +F R   +D+V W+S+I  
Sbjct: 482 VFGRSIHGFAIKNGLEINTSLNTSLTEMYINCGDE-RAATNMFTRCPQRDLVSWNSLISS 540

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK--AGLN 365
           Y ++ +  +A+ LF+ M +  +EPNSVT++ IL+SCT+ + L  G  +H Y  +    L 
Sbjct: 541 YIKNDNAGKALLLFNHM-ISELEPNSVTIINILTSCTQLAHLPLGQCLHAYTTRREVSLE 599

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            D S+ NA + MY++CG +  + +IF  +  R  VSW  +I+GYG HG G +A   F +M
Sbjct: 600 MDASLANAFITMYARCGKLQYAEKIFCTLQTRSIVSWNAMITGYGMHGRGRDATLAFAQM 659

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
            + G +P+ ++  ++LSAC+H+GL      LF++++++  IA  + HY C VDLLG+ G 
Sbjct: 660 LDDGFKPNNVSFASVLSACSHSGLTVTGLQLFHSMVRDFGIAPQLTHYGCMVDLLGRGGH 719

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV 545
             +A   +++MP++P   I  +L+S+C+I    ++ E +  +L+E EP N  N+ LLS +
Sbjct: 720 FSEAIAFINSMPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNI 779

Query: 546 CSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
            + +G W    ++ + +R +GL K  G S I
Sbjct: 780 YAAAGLWSEVVQIRKWLRERGLGKPPGTSWI 810



 Score =  225 bits (574), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 134/429 (31%), Positives = 235/429 (54%), Gaps = 4/429 (0%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           ++   G+  ++A +P V+KAC       + G+++H          D  +  +L+  Y K 
Sbjct: 50  QMESLGITPDSATMPLVLKACGRLNAIGN-GVRIHSCIRGLDLINDVRVGTALVDFYCKC 108

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
                A ++F EMP RD +SWN++I+ +     Y  ++ +F EM   G    +  +  ++
Sbjct: 109 GLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEAVLLFVEMKKAGLTPNSRTVVALL 168

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
             C ++ EL LG++IH   + +G F++  +V TAL+  Y +    +++ RVF  M++RN 
Sbjct: 169 LACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFYMRFDA-VLSHRVFSLMLVRNI 227

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           VSW A+I+G ++  +    + L+ +M  EG+K   VT+ +V+ ACAE   LR G  +H  
Sbjct: 228 VSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRLGMQLHQL 287

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
           A       D  +  AL++MY +   +L  +  +F      D  +W+S+I  Y   G  +E
Sbjct: 288 AIKFNLINDLFILNALLNMYSD-NGSLESSWALFNAVPTSDAALWNSMISSYIGFGFHAE 346

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLS-HGLGVHCYIMKAGLNFDVSIGNALM 375
           A+ LF +MRLERI+ +  T+  +LS C   +  S  G G+H + MK+G+  D  +GNAL+
Sbjct: 347 AIALFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIWGRGLHAHAMKSGIELDAYLGNALL 406

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           +MY K   IT++  +F +M   D +SW T+IS +    +  +A +LFL M ES ++ ++ 
Sbjct: 407 SMYVKHNQITAAQYVFEKMRGLDVISWNTMISAFAQSMFRAKAFELFLMMCESEIKFNSY 466

Query: 436 TVLAILSAC 444
           T++++L+ C
Sbjct: 467 TIVSLLAFC 475



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 119/352 (33%), Positives = 190/352 (53%), Gaps = 8/352 (2%)

Query: 97  WNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVI 156
           WNSII   T+       L  + +M   G    +  +  ++  C ++  +  G +IH+ + 
Sbjct: 28  WNSIIKHHTKLKNDHAILSTYTQMESLGITPDSATMPLVLKACGRLNAIGNGVRIHSCI- 86

Query: 157 VDGSFEL--SVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDT 214
                +L   V V TAL+D Y KC     A +VF +M  R+ VSW A+ISG +    Y  
Sbjct: 87  --RGLDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKE 144

Query: 215 GIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG-FDFDHHLSAALM 273
            + LF  M++ G+ P   T+  +LLAC E+ +LR G+ IHGY    G FD D ++  AL+
Sbjct: 145 AVLLFVEMKKAGLTPNSRTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALV 204

Query: 274 HMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNS 333
             Y      L  +  +F    V+++V W++II G+   GD ++A+KL+S M +E I+ ++
Sbjct: 205 GFYMRFDAVL--SHRVFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDA 262

Query: 334 VTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNE 393
           VT+L ++ +C     L  G+ +H   +K  L  D+ I NAL+NMYS  GS+ SS  +FN 
Sbjct: 263 VTMLVVIQACAEYGCLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNA 322

Query: 394 MAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
           +   D   W ++IS Y   G+  EA+ LF++M+   ++ D  T+  +LS CN
Sbjct: 323 VPTSDAALWNSMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCN 374



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 131/254 (51%), Gaps = 3/254 (1%)

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258
           W ++I      +N    +  +  M+  G+ P   T+ +VL AC  L  + NG  IH    
Sbjct: 28  WNSIIKHHTKLKNDHAILSTYTQMESLGITPDSATMPLVLKACGRLNAIGNGVRIHSCIR 87

Query: 259 CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAM 318
                 D  +  AL+  YC+C      +++  E  + +D+V W+++I GY       EA+
Sbjct: 88  GLDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPE-RDLVSWNALISGYVGCLCYKEAV 146

Query: 319 KLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL-NFDVSIGNALMNM 377
            LF  M+   + PNS T++A+L +C     L  G  +H Y ++ GL + D  +G AL+  
Sbjct: 147 LLFVEMKKAGLTPNSRTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGF 206

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           Y +  ++ S H++F+ M  R+ VSW  +I+G+   G   +AL+L+  M   G++ DA+T+
Sbjct: 207 YMRFDAVLS-HRVFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTM 265

Query: 438 LAILSACNHAGLVK 451
           L ++ AC   G ++
Sbjct: 266 LVVIQACAEYGCLR 279


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 192/620 (30%), Positives = 329/620 (53%), Gaps = 65/620 (10%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           +G   +   LP V+KAC    +++  G   H     +G +++  I N+L++MY++    E
Sbjct: 149 AGTRPDHFTLPHVLKACGELPSYR-CGSAFHGLICCNGFESNVFICNALVAMYSRCGSLE 207

Query: 81  SAYQLFDEMPYR---DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS 137
            A  +FDE+  R   D ISWNSI++   ++     +L++F +M L          + IIS
Sbjct: 208 EASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIIS 267

Query: 138 L------CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM 191
           +      C  +  +   +++H   I +G+F   VFV  AL+D Y+KC     A++VF  M
Sbjct: 268 IVNILPACGSLKAVPQTKEVHGNAIRNGTFP-DVFVGNALIDAYAKCGLMENAVKVFNMM 326

Query: 192 VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK----------------------- 228
             ++ VSW AM++G   S N++   +LF+ M++E +                        
Sbjct: 327 EFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEAL 386

Query: 229 ------------PTRVTLTIVLLACAELRDLRNGKAIHGYAY--CC--------GFDFDH 266
                       P  VT+  VL ACA L     G  IH Y+   C         G D D 
Sbjct: 387 NLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDL 446

Query: 267 HLSAALMHMYCECTEALHPARIIFERTKV--KDVVIWSSIIRGYSQSGDLSEAMKLFSRM 324
            +  AL+ MY +C  +   AR IF+   +  ++VV W+ +I G++Q GD ++A+KLF  M
Sbjct: 447 MVYNALIDMYSKC-RSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEM 505

Query: 325 RLER--IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS---IGNALMNMYS 379
             E   + PN+ T+  IL +C   + +  G  +H Y+++    ++ S   + N L++MYS
Sbjct: 506 ISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHH-RYESSAYFVANCLIDMYS 564

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           KCG + ++  +F+ M+ +  +SWT++++GYG HG G EAL +F +M+++G  PD IT L 
Sbjct: 565 KCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLV 624

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           +L AC+H G+V +  + F+++  +  +    EHYAC +DLL +SG+++ A + V  MPM+
Sbjct: 625 VLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPME 684

Query: 500 PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVW 559
           P+  +  +L+SACR+H  +E+AE   ++L+E   EN  +YTL+S + + +G W     + 
Sbjct: 685 PTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIR 744

Query: 560 RVMRAKGLSKSYGFSRIENE 579
            +M+  G+ K  G S ++ +
Sbjct: 745 HLMKKSGIKKRPGCSWVQGQ 764



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 125/483 (25%), Positives = 217/483 (44%), Gaps = 74/483 (15%)

Query: 6   FYEQTLHLYKQELHP-SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPV 64
           F + TL ++++  +  S + S   ILP+     A  QT +     +H  A+++G+  D  
Sbjct: 247 FSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKE-----VHGNAIRNGTFPDVF 301

Query: 65  ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLE--------- 115
           + N+LI  YAK    E+A ++F+ M ++D +SWN+++  ++Q+G +  + E         
Sbjct: 302 VGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKEN 361

Query: 116 --------------------------MFREMYLCGFVLKAELLAGIISLCSQIGELELGR 149
                                     +FR+M   G +     +  ++S C+ +G    G 
Sbjct: 362 IPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGT 421

Query: 150 QIHA------LVIVDGSF---ELSVFVSTALLDLYSKCHHWLIALRVFEQMVI--RNEVS 198
           +IHA      L+ +D  F   +  + V  AL+D+YSKC  +  A  +F+ + +  RN V+
Sbjct: 422 EIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVT 481

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQRE--GVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           WT MI G     + +  + LF  M  E  GV P   T++ +L+ACA L  +R GK IH Y
Sbjct: 482 WTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAY 541

Query: 257 AYCCGFDFDHH--------LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
                    HH        ++  L+ MY +C + +  AR +F+    K  + W+S++ GY
Sbjct: 542 V------LRHHRYESSAYFVANCLIDMYSKCGD-VDTARHVFDSMSQKSAISWTSMMTGY 594

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG-VHCYIMKAGLNFD 367
              G  SEA+ +F +MR     P+ +T L +L +C+    +  GL          GL   
Sbjct: 595 GMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPR 654

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDF-VSWTTLISGYGFHG---YGEEALQLFL 423
                  +++ ++ G +  + +   +M      V W  L+S    H      E AL   +
Sbjct: 655 AEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLV 714

Query: 424 EMQ 426
           EM 
Sbjct: 715 EMN 717



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 154/304 (50%), Gaps = 10/304 (3%)

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           + T ++  Y  C     AL V E++     V W  +I   I     D+ I++   M R G
Sbjct: 91  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 150

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
            +P   TL  VL AC EL   R G A HG   C GF+ +  +  AL+ MY  C  +L  A
Sbjct: 151 TRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCG-SLEEA 209

Query: 287 RIIFE---RTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNS------VTLL 337
            +IF+   +  + DV+ W+SI+  + +S +   A+ LFS+M L   E  +      ++++
Sbjct: 210 SMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIV 269

Query: 338 AILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR 397
            IL +C     +     VH   ++ G   DV +GNAL++ Y+KCG + ++ ++FN M  +
Sbjct: 270 NILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 329

Query: 398 DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLF 457
           D VSW  +++GY   G  E A +LF  M++  +  D +T  A+++  +  G   EA  LF
Sbjct: 330 DVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLF 389

Query: 458 NNVM 461
             ++
Sbjct: 390 RQMI 393



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 139/567 (24%), Positives = 241/567 (42%), Gaps = 83/567 (14%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKS----------G 58
           + L+L++Q +  SG   N   + SV+ ACA        G ++H  +LK+          G
Sbjct: 384 EALNLFRQMIF-SGSLPNCVTIISVLSACASLGAFSQ-GTEIHAYSLKNCLLTLDNDFGG 441

Query: 59  SDADPVISNSLISMYAKFSKPESAYQLFDEMPY--RDTISWNSIINCFTQNGFYVRSLEM 116
            D D ++ N+LI MY+K    ++A  +FD++P   R+ ++W  +I    Q G    +L++
Sbjct: 442 EDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKL 501

Query: 117 FREMY--LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSV-FVSTALLD 173
           F EM     G    A  ++ I+  C+ +  + +G+QIHA V+    +E S  FV+  L+D
Sbjct: 502 FVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLID 561

Query: 174 LYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVT 233
           +YSKC     A  VF+ M  ++ +SWT+M++G          +D+F  M++ G  P  +T
Sbjct: 562 MYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDIT 621

Query: 234 LTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERT 293
             +VL AC+       G    G +Y      D+ L+    H  C                
Sbjct: 622 FLVVLYACSHC-----GMVDQGLSYFDSMSADYGLTPRAEHYACA--------------- 661

Query: 294 KVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGL 353
                      I   ++SG L +A +    M +   EP +V  +A+LS+C   S +   L
Sbjct: 662 -----------IDLLARSGRLDKAWRTVKDMPM---EPTAVVWVALLSACRVHSNVE--L 705

Query: 354 GVHCYIMKAGLNFDVSIGNALM-NMYSKCGSITSSHQIFNEM-----AARDFVSWTTLIS 407
             H       +N +      L+ N+Y+  G      +I + M       R   SW     
Sbjct: 706 AEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQK 765

Query: 408 GYGFHGYGEEALQLFLEMQESGVEPDAITVL-AILSACNHAGLVKEAETLFNNVMKEKKI 466
           G             F+  +   + P    +L +++      G V E     ++V +E+K 
Sbjct: 766 GTA---------SFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKN 816

Query: 467 ALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLE-VAEMLA 525
            L +EH          S K+  A  +++T P  P  RI  +L      H     +++++ 
Sbjct: 817 NLLVEH----------SEKLALAYGLLTTSPGCP-IRITKNLRVCGDCHSAFTYISKIVD 865

Query: 526 HQLIEAEPENAANYTLLSMVCSESGNW 552
           H+++  +P    ++   S  CS  G W
Sbjct: 866 HEIVVRDPSRFHHFKNGS--CSCGGYW 890


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 180/605 (29%), Positives = 311/605 (51%), Gaps = 67/605 (11%)

Query: 38  AYAQTHQHFGLQLHCTALKSGSDADPV-ISNSLISMYAKFSKPESAYQLFDEMPY----- 91
           A A+T  H    LHC  L++     P  + N L++ Y K  +   A ++FD  P+     
Sbjct: 15  AAARTEPHAAGALHCVILRTLPHPPPTHLLNHLLTAYGKAGRHARARRVFDATPHPNLFT 74

Query: 92  --------------------------RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
                                     RDT+S+N++I  F+  G + R++ ++  +   G 
Sbjct: 75  YNALLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGS 134

Query: 126 VLKAE--LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSK------ 177
            ++     ++ ++   S +G+  LGRQ H  ++  G F ++ FV + L+ +Y+K      
Sbjct: 135 SVRPSRITMSAMVMAASALGDRALGRQFHCQILRLG-FGVNAFVGSPLVGMYAKMGLIGD 193

Query: 178 -------------------------CHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNY 212
                                    C     A R+FE M  R+ ++WT M++G   +   
Sbjct: 194 AKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLE 253

Query: 213 DTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAAL 272
              ++ FR M+ +G+   + T   +L AC  L  L  GK IH Y     +D +  + +AL
Sbjct: 254 SQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSAL 313

Query: 273 MHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPN 332
           + MY +C  ++ PA   F R   K+++ W+++I GY Q+G   EA+++FS M+ + I+P+
Sbjct: 314 VDMYSKC-RSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPD 372

Query: 333 SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFN 392
             TL +++SSC   + L  G   HC  + +GL   +++ NAL+ +Y KCGSI  +H++F+
Sbjct: 373 DFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFD 432

Query: 393 EMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKE 452
           EM   D VSWT L++GY   G  +E + LF +M    V+PD +T + +LSAC+ AG V++
Sbjct: 433 EMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEK 492

Query: 453 AETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSAC 512
             + F+++ K+  I    +HY C +DL  +SG++++A + +  MPM P      +L+SAC
Sbjct: 493 GCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSAC 552

Query: 513 RIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYG 572
           R+ G +E+ +  A  L+E +P+N A+Y LL  + +  GNW    ++ R MR + + K  G
Sbjct: 553 RLRGDMEIGQWAAENLLEIDPQNPASYVLLCSMHATKGNWNQVAQLRRGMRDRQVKKEPG 612

Query: 573 FSRIE 577
            S I+
Sbjct: 613 CSWIK 617



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 151/335 (45%), Gaps = 37/335 (11%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           Q L+ +++ +   G+  +     S++ AC      +  G Q+H   +++  D +  + ++
Sbjct: 255 QALNFFRR-MRFQGIAIDQYTFGSILTACGALSALEQ-GKQIHAYIIRTHYDDNVFVGSA 312

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           L+ MY+K    + A   F  M  ++ ISW ++I  + QNG    ++ +F EM   G    
Sbjct: 313 LVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPD 372

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
              L  +IS C+ +  LE G Q H L +V G     + VS AL+ LY KC     A R+F
Sbjct: 373 DFTLGSVISSCANLASLEEGAQFHCLALVSGLMHY-ITVSNALVTLYGKCGSIEDAHRLF 431

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
           ++M+  ++VSWTA+++G          IDLF  M  + VKP  VT   VL AC+     R
Sbjct: 432 DEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACS-----R 486

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
            G    G +Y      DH +     H  C                          +I  Y
Sbjct: 487 AGFVEKGCSYFHSMQKDHGIVPIDDHYTC--------------------------MIDLY 520

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC 343
           S+SG L EA +   +M +    P+++    +LS+C
Sbjct: 521 SRSGRLKEAEEFIKQMPM---HPDAIGWGTLLSAC 552


>gi|356570738|ref|XP_003553542.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Glycine max]
          Length = 777

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 195/567 (34%), Positives = 303/567 (53%), Gaps = 7/567 (1%)

Query: 13  LYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISM 72
           +Y Q L  SG + +     S+IKAC  A      G QLH   +KSG D   +  N+LISM
Sbjct: 168 MYIQMLR-SGYFPDQLTFGSIIKACCIAGDID-LGGQLHGHVIKSGYDHHLIAQNALISM 225

Query: 73  YAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELL 132
           Y KF +   A  +F  +  +D ISW S+I  FTQ G+ + +L +FR+M+  G     E +
Sbjct: 226 YTKFGQIAHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGVYQPNEFI 285

Query: 133 AG-IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM 191
            G + S C  + + E GRQI  +    G    +VF   +L D+Y+K      A R F Q+
Sbjct: 286 FGSVFSACRSLLKPEFGRQIQGMCAKFG-LGRNVFAGCSLCDMYAKFGFLPSAKRAFYQI 344

Query: 192 VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGK 251
              + VSW A+I+   +S + +  I  F  M   G+ P  +T   +L AC     L  G 
Sbjct: 345 ESPDLVSWNAIIAALANS-DVNEAIYFFCQMIHMGLMPDDITFLNLLCACGSPMTLNQGM 403

Query: 252 AIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFER-TKVKDVVIWSSIIRGYSQ 310
            IH Y    G D    +  +L+ MY +C+  LH A  +F+  ++  ++V W++I+   SQ
Sbjct: 404 QIHSYIIKMGLDKVAAVCNSLLTMYTKCSN-LHDAFNVFKDISENGNLVSWNAILSACSQ 462

Query: 311 SGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSI 370
                EA +LF  M     +P+++T+  IL +C     L  G  VHC+ +K+GL  DVS+
Sbjct: 463 HKQPGEAFRLFKLMLFSENKPDNITITTILGTCAELVSLEVGNQVHCFSVKSGLVVDVSV 522

Query: 371 GNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV 430
            N L++MY+KCG +  +  +F+     D VSW++LI GY   G G+EAL LF  M+  GV
Sbjct: 523 SNRLIDMYAKCGLLKHARYVFDSTQNPDIVSWSSLIVGYAQFGLGQEALNLFRMMRNLGV 582

Query: 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDAC 490
           +P+ +T L +LSAC+H GLV+E   L+N +  E  I    EH +C VDLL ++G + +A 
Sbjct: 583 QPNEVTYLGVLSACSHIGLVEEGWHLYNTMEIELGIPPTREHVSCMVDLLARAGCLYEAE 642

Query: 491 KVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESG 550
             +      P   +  +L+++C+ HG +++AE  A  +++ +P N+A   LLS + + +G
Sbjct: 643 NFIKKTGFDPDITMWKTLLASCKTHGNVDIAERAAENILKLDPSNSAALVLLSNIHASAG 702

Query: 551 NWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           NW     +  +M+  G+ K  G S IE
Sbjct: 703 NWKEVARLRNLMKQMGVQKVPGQSWIE 729



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 127/446 (28%), Positives = 218/446 (48%), Gaps = 6/446 (1%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           M  +  Y + L  +   L  S +    +   ++I AC   ++ + +G ++H   LKS   
Sbjct: 54  MCKQQHYREALDTFNFHLKNSSIQLEPSTYVNLILACTNVRSLK-YGKRIHDHILKSNCQ 112

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
            D V+ N +++MY K    + A + FD M  R  +SW  +I+ ++QNG    ++ M+ +M
Sbjct: 113 PDLVLQNHILNMYGKCGSLKDARKAFDTMQLRSVVSWTIMISGYSQNGQENDAIIMYIQM 172

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
              G+         II  C   G+++LG Q+H  VI  G ++  +    AL+ +Y+K   
Sbjct: 173 LRSGYFPDQLTFGSIIKACCIAGDIDLGGQLHGHVIKSG-YDHHLIAQNALISMYTKFGQ 231

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV-KPTRVTLTIVLL 239
              A  VF  +  ++ +SW +MI+G          + LFR M R+GV +P       V  
Sbjct: 232 IAHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGVYQPNEFIFGSVFS 291

Query: 240 ACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVV 299
           AC  L     G+ I G     G   +     +L  MY +    L  A+  F + +  D+V
Sbjct: 292 ACRSLLKPEFGRQIQGMCAKFGLGRNVFAGCSLCDMYAK-FGFLPSAKRAFYQIESPDLV 350

Query: 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
            W++II   + S D++EA+  F +M    + P+ +T L +L +C     L+ G+ +H YI
Sbjct: 351 SWNAIIAALANS-DVNEAIYFFCQMIHMGLMPDDITFLNLLCACGSPMTLNQGMQIHSYI 409

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFHGYGEEA 418
           +K GL+   ++ N+L+ MY+KC ++  +  +F +++   + VSW  ++S    H    EA
Sbjct: 410 IKMGLDKVAAVCNSLLTMYTKCSNLHDAFNVFKDISENGNLVSWNAILSACSQHKQPGEA 469

Query: 419 LQLFLEMQESGVEPDAITVLAILSAC 444
            +LF  M  S  +PD IT+  IL  C
Sbjct: 470 FRLFKLMLFSENKPDNITITTILGTC 495



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 136/251 (54%), Gaps = 3/251 (1%)

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFR-AMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
           E+S  + I+     Q+Y   +D F   ++   ++    T   ++LAC  +R L+ GK IH
Sbjct: 44  ELSTNSYINLMCKQQHYREALDTFNFHLKNSSIQLEPSTYVNLILACTNVRSLKYGKRIH 103

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
            +        D  L   +++MY +C  +L  AR  F+  +++ VV W+ +I GYSQ+G  
Sbjct: 104 DHILKSNCQPDLVLQNHILNMYGKCG-SLKDARKAFDTMQLRSVVSWTIMISGYSQNGQE 162

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
           ++A+ ++ +M      P+ +T  +I+ +C     +  G  +H +++K+G +  +   NAL
Sbjct: 163 NDAIIMYIQMLRSGYFPDQLTFGSIIKACCIAGDIDLGGQLHGHVIKSGYDHHLIAQNAL 222

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV-EPD 433
           ++MY+K G I  +  +F  ++ +D +SW ++I+G+   GY  EAL LF +M   GV +P+
Sbjct: 223 ISMYTKFGQIAHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGVYQPN 282

Query: 434 AITVLAILSAC 444
                ++ SAC
Sbjct: 283 EFIFGSVFSAC 293



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 97/185 (52%), Gaps = 2/185 (1%)

Query: 316 EAMKLFS-RMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
           EA+  F+  ++   I+    T + ++ +CT    L +G  +H +I+K+    D+ + N +
Sbjct: 62  EALDTFNFHLKNSSIQLEPSTYVNLILACTNVRSLKYGKRIHDHILKSNCQPDLVLQNHI 121

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           +NMY KCGS+  + + F+ M  R  VSWT +ISGY  +G   +A+ ++++M  SG  PD 
Sbjct: 122 LNMYGKCGSLKDARKAFDTMQLRSVVSWTIMISGYSQNGQENDAIIMYIQMLRSGYFPDQ 181

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS 494
           +T  +I+ AC  AG +     L  +V+K       I   A  + +  K G+I  A  V +
Sbjct: 182 LTFGSIIKACCIAGDIDLGGQLHGHVIKSGYDHHLIAQNA-LISMYTKFGQIAHASDVFT 240

Query: 495 TMPMK 499
            +  K
Sbjct: 241 MISTK 245


>gi|356544234|ref|XP_003540559.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Glycine max]
          Length = 916

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 193/561 (34%), Positives = 311/561 (55%), Gaps = 13/561 (2%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G++ +     S++  CA  + +   G QLH   +K    ++  ++N+LI MYAK    + 
Sbjct: 313 GIHPDEFTYTSILSTCACFE-YLEVGRQLHSAIIKKRFTSNLFVNNALIDMYAKAGALKE 371

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A + F+ M YRD ISWN+II  + Q      +  +FR M L G V     LA I+S C  
Sbjct: 372 AGKHFEHMTYRDHISWNAIIVGYVQEEVEAGAFSLFRRMILDGIVPDEVSLASILSACGN 431

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
           I  LE G+Q H L +  G  E ++F  ++L+D+YSKC     A + +  M  R+ VS  A
Sbjct: 432 IKVLEAGQQFHCLSVKLG-LETNLFAGSSLIDMYSKCGDIKDAHKTYSSMPERSVVSVNA 490

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH----GYA 257
           +I+G    +N    I+L   MQ  G+KP+ +T   ++  C     +  G  IH       
Sbjct: 491 LIAG-YALKNTKESINLLHEMQILGLKPSEITFASLIDVCKGSAKVILGLQIHCAIVKRG 549

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIF-ERTKVKDVVIWSSIIRGYSQSGDLSE 316
             CG +F   L  +L+ MY + ++ L  A I+F E + +K +V+W+++I G+ Q+     
Sbjct: 550 LLCGSEF---LGTSLLGMYMD-SQRLADANILFSEFSSLKSIVMWTALISGHIQNECSDV 605

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
           A+ L+  MR   I P+  T + +L +C   S L  G  +H  I   G + D    +AL++
Sbjct: 606 ALNLYREMRDNNISPDQATFVTVLQACALLSSLHDGREIHSLIFHTGFDLDELTSSALVD 665

Query: 377 MYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           MY+KCG + SS Q+F E+A + D +SW ++I G+  +GY + AL++F EM +S + PD +
Sbjct: 666 MYAKCGDVKSSVQVFEELATKKDVISWNSMIVGFAKNGYAKCALKVFDEMTQSCITPDDV 725

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           T L +L+AC+HAG V E   +F+ ++    I   ++HYAC VDLLG+ G +++A + +  
Sbjct: 726 TFLGVLTACSHAGWVYEGRQIFDVMVNYYGIEPRVDHYACMVDLLGRWGFLKEAEEFIDK 785

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGA 555
           + ++P+  I ++L+ ACRIHG  +  +  A +LIE EP++++ Y LLS + + SGNW  A
Sbjct: 786 LEVEPNAMIWANLLGACRIHGDEKRGQRAAKKLIELEPQSSSPYVLLSNMYAASGNWDEA 845

Query: 556 EEVWRVMRAKGLSKSYGFSRI 576
             + R M  K + K  G S I
Sbjct: 846 RSLRRTMIKKDIQKIPGCSWI 866



 Score =  225 bits (574), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 155/579 (26%), Positives = 291/579 (50%), Gaps = 33/579 (5%)

Query: 1   MVSKH----FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALK 56
           M+S H     YE+ L  + Q +   G+ S+ + L SV+ A A      H GL +H  A+K
Sbjct: 188 MISGHAKTAHYEEALAFFHQ-MSKHGVKSSRSTLASVLSAIASLAALNH-GLLVHAHAIK 245

Query: 57  SGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEM 116
            G ++   +++SLI+MY K   P+ A Q+FD +  ++ I WN+++  ++QNGF    +E+
Sbjct: 246 QGFESSIYVASSLINMYGKCQMPDDARQVFDAISQKNMIVWNAMLGVYSQNGFLSNVMEL 305

Query: 117 FREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYS 176
           F +M  CG          I+S C+    LE+GRQ+H+  I+   F  ++FV+ AL+D+Y+
Sbjct: 306 FLDMISCGIHPDEFTYTSILSTCACFEYLEVGRQLHS-AIIKKRFTSNLFVNNALIDMYA 364

Query: 177 KCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTI 236
           K      A + FE M  R+ +SW A+I G +  +       LFR M  +G+ P  V+L  
Sbjct: 365 KAGALKEAGKHFEHMTYRDHISWNAIIVGYVQEEVEAGAFSLFRRMILDGIVPDEVSLAS 424

Query: 237 VLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK 296
           +L AC  ++ L  G+  H  +   G + +    ++L+ MY +C + +  A   +     +
Sbjct: 425 ILSACGNIKVLEAGQQFHCLSVKLGLETNLFAGSSLIDMYSKCGD-IKDAHKTYSSMPER 483

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVH 356
            VV  +++I GY+   +  E++ L   M++  ++P+ +T  +++  C   + +  GL +H
Sbjct: 484 SVVSVNALIAGYALK-NTKESINLLHEMQILGLKPSEITFASLIDVCKGSAKVILGLQIH 542

Query: 357 CYIMKAGLNFDVS-IGNALMNMYSKCGSITSSHQIFNEMAA-RDFVSWTTLISGYGFHGY 414
           C I+K GL      +G +L+ MY     +  ++ +F+E ++ +  V WT LISG+  +  
Sbjct: 543 CAIVKRGLLCGSEFLGTSLLGMYMDSQRLADANILFSEFSSLKSIVMWTALISGHIQNEC 602

Query: 415 GEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY- 473
            + AL L+ EM+++ + PD  T + +L AC           L +++   ++I   I H  
Sbjct: 603 SDVALNLYREMRDNNISPDQATFVTVLQAC----------ALLSSLHDGREIHSLIFHTG 652

Query: 474 --------ACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
                   +  VD+  K G ++ + +V   +  K      +S++     +G  + A  + 
Sbjct: 653 FDLDELTSSALVDMYAKCGDVKSSVQVFEELATKKDVISWNSMIVGFAKNGYAKCALKVF 712

Query: 526 HQLIEA--EPENAANYTLLSMVCSESGNWLGAEEVWRVM 562
            ++ ++   P++     +L+  CS +G      +++ VM
Sbjct: 713 DEMTQSCITPDDVTFLGVLT-ACSHAGWVYEGRQIFDVM 750



 Score =  201 bits (512), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 155/569 (27%), Positives = 272/569 (47%), Gaps = 45/569 (7%)

Query: 3   SKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDAD 62
           +KH+  + +  +      SG   +       + ACA  Q + H G  +H   +KSG ++ 
Sbjct: 23  TKHYSSERVLQFYASFMNSGHSPDQFTFAVTLSACAKLQ-NLHLGRAVHSCVIKSGLEST 81

Query: 63  PVISNSLISMYAKFSKPESAYQLFDEMPYRD--TISWNSIINCFTQNGFYVRSLEMFREM 120
                +LI +YAK +    A  +F   P+    T+SW ++I+ + Q G    +L +F +M
Sbjct: 82  SFCQGALIHLYAKCNSLTCARTIFASAPFPHLHTVSWTALISGYVQAGLPHEALHIFDKM 141

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
                           ++  Q+          ALV V     L+ ++S   LD       
Sbjct: 142 RNS-------------AVPDQV----------ALVTV-----LNAYISLGKLD------- 166

Query: 181 WLIALRVFEQMVI--RNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVL 238
              A ++F+QM I  RN V+W  MISG   + +Y+  +  F  M + GVK +R TL  VL
Sbjct: 167 --DACQLFQQMPIPIRNVVAWNVMISGHAKTAHYEEALAFFHQMSKHGVKSSRSTLASVL 224

Query: 239 LACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDV 298
            A A L  L +G  +H +A   GF+   +++++L++MY +C +    AR +F+    K++
Sbjct: 225 SAIASLAALNHGLLVHAHAIKQGFESSIYVASSLINMYGKC-QMPDDARQVFDAISQKNM 283

Query: 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCY 358
           ++W++++  YSQ+G LS  M+LF  M    I P+  T  +ILS+C    +L  G  +H  
Sbjct: 284 IVWNAMLGVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFEYLEVGRQLHSA 343

Query: 359 IMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEA 418
           I+K     ++ + NAL++MY+K G++  + + F  M  RD +SW  +I GY        A
Sbjct: 344 IIKKRFTSNLFVNNALIDMYAKAGALKEAGKHFEHMTYRDHISWNAIIVGYVQEEVEAGA 403

Query: 419 LQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVD 478
             LF  M   G+ PD +++ +ILSAC +  ++ EA   F+ +  +  +   +   +  +D
Sbjct: 404 FSLFRRMILDGIVPDEVSLASILSACGNIKVL-EAGQQFHCLSVKLGLETNLFAGSSLID 462

Query: 479 LLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAAN 538
           +  K G I+DA K  S+MP +    + ++L++   +    E   +L    I     +   
Sbjct: 463 MYSKCGDIKDAHKTYSSMPERSVVSV-NALIAGYALKNTKESINLLHEMQILGLKPSEIT 521

Query: 539 YTLLSMVCSESGNWLGAEEVWRVMRAKGL 567
           +  L  VC  S   +   ++   +  +GL
Sbjct: 522 FASLIDVCKGSAKVILGLQIHCAIVKRGL 550


>gi|225457044|ref|XP_002279639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300
           [Vitis vinifera]
          Length = 807

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 191/576 (33%), Positives = 309/576 (53%), Gaps = 8/576 (1%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           Y ++L  ++  +   G+Y N     S I +C+  Q+  H G ++H   +KSG D +  + 
Sbjct: 191 YTRSLMFFRSMVWEFGIYPNRVACVSSILSCSSLQSLTH-GREIHGVVVKSGLDVEEYLV 249

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTIS-----WNSIINCFTQNGFYVRSLEMFREMY 121
           +SLI MY K    ++A  +F+ +  +D++      WN +I+ +  NG + ++L +F +M 
Sbjct: 250 SSLIEMYMKCGSIKNAENIFNSILDKDSVRRNAVIWNVMISGYVSNGCFSQALLLFIKMM 309

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
           + G       +  + SLCS+  ++  G+QIH L+   G  + ++ V TALLD+Y KC   
Sbjct: 310 VWGIKPDYSTMVSLFSLCSESLDIAFGKQIHGLIFKFG-LKNNIRVETALLDMYLKCGDM 368

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
              L++F +    N + W+A+IS C  S      ++LF   + E        L  VL AC
Sbjct: 369 GTGLKIFRRSQNHNLIMWSAVISNCAQSGCPTKALELFYEFKMEDGLADSGILVAVLRAC 428

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           + L     G  IHG A   GF  D  + +AL+ +Y +C +  +  ++ F R   KD+V W
Sbjct: 429 SSLTLKPEGMQIHGLATKMGFVSDVFVGSALVDLYAKCRDMGYSKKV-FLRLSQKDLVSW 487

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           +++I GY+Q     EA+K F  M+LE I PN+VT+  ILS C   S ++    VH Y+++
Sbjct: 488 NALISGYAQDECADEALKAFRDMQLEEIRPNTVTIACILSVCAHLSVMTLCKEVHGYLIR 547

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
            GL   V + N+L+  Y+KCG I SS   F +M  R+ VSW ++I G G H   +E + L
Sbjct: 548 QGLGSTVLVSNSLIATYAKCGDINSSLYTFEKMPERNDVSWNSIILGMGMHSRTDEMIVL 607

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
           F +M  SG++PD +T  AILSAC+HAG V E    F +++++  +   +E Y C VDLLG
Sbjct: 608 FDKMVASGIKPDHVTFTAILSACSHAGRVDEGCKYFKSMVEDFNLKPQLEQYTCMVDLLG 667

Query: 482 KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTL 541
           ++G +  A  ++  MP  P  RI  SL+ +C+ HG   +AE++A+ + +  P +     L
Sbjct: 668 RAGHLNQAYDLIMAMPCTPDDRIWGSLLGSCKNHGDEILAEIVANHIFKLVPSSVGYRVL 727

Query: 542 LSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           L+ +    G      +V   ++  GL K  G S IE
Sbjct: 728 LANLYENLGKGREGSKVRSEIKDMGLKKKPGCSWIE 763



 Score =  236 bits (601), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 158/557 (28%), Positives = 284/557 (50%), Gaps = 22/557 (3%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           F++  + +Y + L            P +IKA        + G Q+H   LK G   D  +
Sbjct: 88  FFDDAIGVYLKMLDDGVKVEEFRYFPCLIKAFG-GLCDVYKGRQIHGHVLKLGVLDDVSV 146

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
            NSL++MY K    E A Q+F++MP  D +SWN++I+ F ++  Y RSL  FR M +  F
Sbjct: 147 VNSLLTMYWKCGVVEDAVQMFEKMPEVDLVSWNTMISGFQKSMDYTRSLMFFRSM-VWEF 205

Query: 126 VLKAELLAGIISL--CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
            +    +A + S+  CS +  L  GR+IH +V+  G  ++  ++ ++L+++Y KC     
Sbjct: 206 GIYPNRVACVSSILSCSSLQSLTHGREIHGVVVKSG-LDVEEYLVSSLIEMYMKCGSIKN 264

Query: 184 ALRVFEQM-----VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVL 238
           A  +F  +     V RN V W  MISG + +  +   + LF  M   G+KP   T+  + 
Sbjct: 265 AENIFNSILDKDSVRRNAVIWNVMISGYVSNGCFSQALLLFIKMMVWGIKPDYSTMVSLF 324

Query: 239 LACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDV 298
             C+E  D+  GK IHG  +  G   +  +  AL+ MY +C + +     IF R++  ++
Sbjct: 325 SLCSESLDIAFGKQIHGLIFKFGLKNNIRVETALLDMYLKCGD-MGTGLKIFRRSQNHNL 383

Query: 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCY 358
           ++WS++I   +QSG  ++A++LF   ++E    +S  L+A+L +C+  +    G+ +H  
Sbjct: 384 IMWSAVISNCAQSGCPTKALELFYEFKMEDGLADSGILVAVLRACSSLTLKPEGMQIHGL 443

Query: 359 IMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEA 418
             K G   DV +G+AL+++Y+KC  +  S ++F  ++ +D VSW  LISGY      +EA
Sbjct: 444 ATKMGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLSQKDLVSWNALISGYAQDECADEA 503

Query: 419 LQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKE---KKIALAIEHYAC 475
           L+ F +MQ   + P+ +T+  ILS C H  ++   + +   ++++     + ++    A 
Sbjct: 504 LKAFRDMQLEEIRPNTVTIACILSVCAHLSVMTLCKEVHGYLIRQGLGSTVLVSNSLIAT 563

Query: 476 YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EP 533
           Y     K G I  +      MP +      +S++    +H R +   +L  +++ +  +P
Sbjct: 564 Y----AKCGDINSSLYTFEKMPERNDVS-WNSIILGMGMHSRTDEMIVLFDKMVASGIKP 618

Query: 534 ENAANYTLLSMVCSESG 550
           ++     +LS  CS +G
Sbjct: 619 DHVTFTAILS-ACSHAG 634


>gi|147804811|emb|CAN64701.1| hypothetical protein VITISV_037299 [Vitis vinifera]
          Length = 1111

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 186/530 (35%), Positives = 306/530 (57%), Gaps = 4/530 (0%)

Query: 47   GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
            G  LH   +K+G D   V+ +SL+SMY+K   PE A++ F E+  +D ISW S+I+ +++
Sbjct: 586  GRCLHGLVVKTGMDYSQVVQSSLLSMYSKCGNPEEAHRSFCEVLNKDIISWTSMISAYSR 645

Query: 107  NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
             G+    ++MF EM + G      +++ ++S  S    +   +  H L+I    + L   
Sbjct: 646  MGWATECIDMFWEMLVSGIYPDGIVISCMLSSFSNSMRVFEAKAFHGLII-RRHYTLDQM 704

Query: 167  VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
            V  ALL +Y K     +A + F ++  +N  +W  M+SG          I LFR MQ  G
Sbjct: 705  VQNALLSMYCKFGFLKLAEKFFGRVNEQNFEAWNLMVSGYGKIGLIMKCIGLFREMQCLG 764

Query: 227  VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
            ++    +L  V+ +C++L      ++IH Y      D +  ++ +L+ MY + +  L  A
Sbjct: 765  IESDSNSLVSVVSSCSQLGATHLARSIHCYMIKNLMDENVSVNNSLIDMYGK-SGNLTIA 823

Query: 287  RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
            R IF R   +D+V W+++I  Y+  G  +EA+ L+ +M LE ++PNS TL+ +LS+C+  
Sbjct: 824  RRIFCRIP-RDIVTWNTLISSYAHCGHFAEALSLYDKMVLEDLKPNSATLVXVLSACSHL 882

Query: 347  SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
            + L  G  VH YI      F++SI  AL++MY+KCG +  S +IFN M  RD ++W  +I
Sbjct: 883  ASLEEGEKVHNYINGGKFEFNLSIATALIDMYAKCGQLEKSREIFNSMHERDVITWNVMI 942

Query: 407  SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
            SGYG HG    A++ F +M+ES  +P+ +T LA+LSAC HAGLVKE + LF   M++  +
Sbjct: 943  SGYGMHGDARSAIEXFQQMEESSAKPNGLTFLAVLSACAHAGLVKEGKYLFGK-MQDYSV 1001

Query: 467  ALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAH 526
            A  ++HYAC VDLLG+SG +++A  +V +MP+ P   +  +L+S+C+IH  +E+   +A 
Sbjct: 1002 APNLKHYACMVDLLGRSGNLQEAEALVLSMPISPDGGVWGALLSSCKIHNEIEMGIRIAK 1061

Query: 527  QLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
              I ++ EN   Y ++S + S  G W  AE+   +M+ +G+ K  G+S +
Sbjct: 1062 HAIXSDVENDGYYVMISNMYSSIGKWEEAEKARGIMKERGVRKKTGWSAV 1111



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 97/366 (26%), Positives = 165/366 (45%), Gaps = 45/366 (12%)

Query: 45   HFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCF 104
            H    +HC  +K+  D +  ++NSLI MY K      A ++F  +P RD ++WN++I+ +
Sbjct: 786  HLARSIHCYMIKNLMDENVSVNNSLIDMYGKSGNLTIARRIFCRIP-RDIVTWNTLISSY 844

Query: 105  TQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELS 164
               G +  +L ++ +M L      +  L  ++S CS +  LE G ++H   I  G FE +
Sbjct: 845  AHCGHFAEALSLYDKMVLEDLKPNSATLVXVLSACSHLASLEEGEKVHNY-INGGKFEFN 903

Query: 165  VFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR 224
            + ++TAL+D+Y+KC     +  +F  M  R+ ++W  MISG     +  + I+ F+ M+ 
Sbjct: 904  LSIATALIDMYAKCGQLEKSREIFNSMHERDVITWNVMISGYGMHGDARSAIEXFQQMEE 963

Query: 225  EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
               KP  +T   VL ACA    ++ GK      Y  G   D+ ++  L H  C       
Sbjct: 964  SSAKPNGLTFLAVLSACAHAGLVKEGK------YLFGKMQDYSVAPNLKHYAC------- 1010

Query: 285  PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
                               ++    +SG+L EA  L   M    I P+     A+LSSC 
Sbjct: 1011 -------------------MVDLLGRSGNLQEAEALVLSM---PISPDGGVWGALLSSCK 1048

Query: 345  RQSFLSHGLGVHCYIMKAGLNFDVSIGNALM--NMYSKCGSITSSHQ---IFNEMAARDF 399
              + +  G+ +  + + + +  D   G  +M  NMYS  G    + +   I  E   R  
Sbjct: 1049 IHNEIEMGIRIAKHAIXSDVEND---GYYVMISNMYSSIGKWEEAEKARGIMKERGVRKK 1105

Query: 400  VSWTTL 405
              W+ +
Sbjct: 1106 TGWSAV 1111



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 148/312 (47%), Gaps = 18/312 (5%)

Query: 193 IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR---EGVKPTRVTLTIVLLACAELRDLRN 249
           IRN   W   ++G         G++    M R   +G +P   TL     AC  L  L  
Sbjct: 531 IRNVEFWRRHMNG-----ESKMGLECLCEMHRIGGDGERPNFRTLEGGFQACGNLGALLE 585

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
           G+ +HG     G D+   + ++L+ MY +C       R   E    KD++ W+S+I  YS
Sbjct: 586 GRCLHGLVVKTGMDYSQVVQSSLLSMYSKCGNPEEAHRSFCEVLN-KDIISWTSMISAYS 644

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
           + G  +E + +F  M +  I P+ + +  +LSS +    +      H  I++     D  
Sbjct: 645 RMGWATECIDMFWEMLVSGIYPDGIVISCMLSSFSNSMRVFEAKAFHGLIIRRHYTLDQM 704

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
           + NAL++MY K G +  + + F  +  ++F +W  ++SGYG  G   + + LF EMQ  G
Sbjct: 705 VQNALLSMYCKFGFLKLAEKFFGRVNEQNFEAWNLMVSGYGKIGLIMKCIGLFREMQCLG 764

Query: 430 VEPDAITVLAILSACNHAGLVKEAET----LFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
           +E D+ ++++++S+C+  G    A +    +  N+M E      +      +D+ GKSG 
Sbjct: 765 IESDSNSLVSVVSSCSQLGATHLARSIHCYMIKNLMDEN-----VSVNNSLIDMYGKSGN 819

Query: 486 IEDACKVVSTMP 497
           +  A ++   +P
Sbjct: 820 LTIARRIFCRIP 831


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 182/577 (31%), Positives = 314/577 (54%), Gaps = 12/577 (2%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           F   +  L  + L   GL  +   + +++  CA  +     G+ +H  A+K G   + ++
Sbjct: 227 FSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCA-GEGEVDIGMGIHGLAVKLGLSEEVMV 285

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
           +N+++ MY+K      A   F +   ++ +SWN++I+ F+  G    +  + +EM + G 
Sbjct: 286 NNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGE 345

Query: 126 VLKAE--LLAGIISLCSQIGELELGRQIHALVIVDGSFE---LSVFVSTALLDLYSKCHH 180
            +KA    +  ++  C    +L   +++H       SF      V +S A +  Y+KC  
Sbjct: 346 EMKANEVTILNVLPACLDKLQLRSLKELHGY-----SFRHCFQHVELSNAFILAYAKCGA 400

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
              A +VF  +  +   SW A+I G   + +    + L   M   G +P   T++ +LLA
Sbjct: 401 LNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLA 460

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
           CA L+ L+ GK IHGY    G + D  +  +L+  Y  C +A   AR++F+R K K++V 
Sbjct: 461 CAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKA-SSARVLFDRMKDKNLVS 519

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           W+++I GYSQ+G   E++ LF +   E I+ + + ++++  +C++ S L  G   H Y++
Sbjct: 520 WNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVL 579

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
           KA    D  +G ++++MY+K G I  S ++F+ +  ++  SW  +I  +G HG+G+EA++
Sbjct: 580 KALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAIE 639

Query: 421 LFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLL 480
           L+  M++ G  PD  T + IL AC HAGLV+E    F  +     I   +EHYAC +D+L
Sbjct: 640 LYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLIDML 699

Query: 481 GKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYT 540
            ++G+++DA ++V+ MP +   RI SSL+ +CR  G LE+ E +A +L+E EP+ A NY 
Sbjct: 700 ARAGRLDDALRLVNEMPEEADNRIWSSLLRSCRTFGALEIGEKVAKKLLELEPDKAENYV 759

Query: 541 LLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           LLS + +  G W G   V ++M+  GL K  G S IE
Sbjct: 760 LLSNLYAGLGKWDGVRRVRQMMKEIGLQKDAGCSWIE 796



 Score =  228 bits (581), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 159/553 (28%), Positives = 274/553 (49%), Gaps = 18/553 (3%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
            Y   + ++   +  +    +    PSVIKAC         G  +H   +K G   D  +
Sbjct: 125 LYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACG-GILDVRLGEVIHGMVIKMGLVLDVFV 183

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY-LCG 124
            N+L+ MY K    + A ++FD MP  + +SWNS+I  F++NGF   S ++  EM    G
Sbjct: 184 GNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEG 243

Query: 125 FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
            +     +  I+ +C+  GE+++G  IH L +  G  E  V V+ A++ +YSKC +   A
Sbjct: 244 LLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSE-EVMVNNAMVYMYSKCGYLNEA 302

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG--VKPTRVTLTIVLLACA 242
              F +   +N VSW  MIS      + +   +L + MQ +G  +K   VT+  VL AC 
Sbjct: 303 QMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACL 362

Query: 243 ELRDLRNGKAIHGYAY--CCGFDFDH-HLSAALMHMYCECTEALHPARIIFERTKVKDVV 299
           +   LR+ K +HGY++  C    F H  LS A +  Y +C  AL+ A  +F     K V 
Sbjct: 363 DKLQLRSLKELHGYSFRHC----FQHVELSNAFILAYAKCG-ALNSAEKVFHGIGDKTVS 417

Query: 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
            W+++I G++Q+GD  +A+ L  +M     +P+  T+ ++L +C     L +G  +H Y+
Sbjct: 418 SWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYV 477

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEAL 419
           ++ GL  D  +G +L++ Y  CG  +S+  +F+ M  ++ VSW  +ISGY  +G   E+L
Sbjct: 478 LRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYESL 537

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC-YVD 478
            LF +    G++   I ++++  AC+    ++  +     V+K  +   A     C  +D
Sbjct: 538 ALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQTEDAF--VGCSIID 595

Query: 479 LLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGR-LEVAEMLAHQLIEAEPENAA 537
           +  KSG I+++ KV   +  K +    ++++ A  IHG   E  E+        +  +  
Sbjct: 596 MYAKSGCIKESRKVFDGLKDK-NVASWNAIIVAHGIHGHGKEAIELYERMKKVGQMPDRF 654

Query: 538 NYTLLSMVCSESG 550
            Y  + M C  +G
Sbjct: 655 TYIGILMACGHAG 667



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 125/391 (31%), Positives = 207/391 (52%), Gaps = 11/391 (2%)

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D V++  LI MYA    P  +  +FD M  ++ I WN++++ +T+NG Y   +++F ++ 
Sbjct: 78  DYVLNTRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLV 137

Query: 122 L-CGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
               F         +I  C  I ++ LG  IH +VI  G   L VFV  AL+ +Y KC  
Sbjct: 138 SDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMG-LVLDVFVGNALVGMYGKCGA 196

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQN---YDTGIDLFRAMQREGVKPTRVTLTIV 237
              A++VF+ M   N VSW +MI  C  S+N    D+   L   +  EG+ P  VT+  +
Sbjct: 197 VDEAMKVFDFMPETNLVSWNSMI--CAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTI 254

Query: 238 LLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKD 297
           L  CA   ++  G  IHG A   G   +  ++ A+++MY +C   L+ A++ F +   K+
Sbjct: 255 LPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCG-YLNEAQMSFVKNNNKN 313

Query: 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRL--ERIEPNSVTLLAILSSCTRQSFLSHGLGV 355
           VV W+++I  +S  GD++EA  L   M++  E ++ N VT+L +L +C  +  L     +
Sbjct: 314 VVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKEL 373

Query: 356 HCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYG 415
           H Y  +      V + NA +  Y+KCG++ S+ ++F+ +  +   SW  LI G+  +G  
Sbjct: 374 HGYSFRHCFQH-VELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDP 432

Query: 416 EEALQLFLEMQESGVEPDAITVLAILSACNH 446
            +AL L  +M  SG +PD  T+ ++L AC H
Sbjct: 433 RKALHLLFQMTYSGQQPDWFTISSLLLACAH 463



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 163/319 (51%), Gaps = 5/319 (1%)

Query: 130 ELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
           E +  ++  C    ++E GR++H  V     +     ++T L+ +Y+ C   L +  VF+
Sbjct: 44  EAIGLLLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFD 103

Query: 190 QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE-GVKPTRVTLTIVLLACAELRDLR 248
            M  +N + W A++SG   +  Y   + +F  +  +   +P   T   V+ AC  + D+R
Sbjct: 104 NMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVR 163

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
            G+ IHG     G   D  +  AL+ MY +C  A+  A  +F+     ++V W+S+I  +
Sbjct: 164 LGEVIHGMVIKMGLVLDVFVGNALVGMYGKCG-AVDEAMKVFDFMPETNLVSWNSMICAF 222

Query: 309 SQSGDLSEAMKLFSRMRLER-IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
           S++G   ++  L   M  E  + P+ VT++ IL  C  +  +  G+G+H   +K GL+ +
Sbjct: 223 SENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEE 282

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
           V + NA++ MYSKCG +  +   F +   ++ VSW T+IS +   G   EA  L  EMQ 
Sbjct: 283 VMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQI 342

Query: 428 SGVEPDA--ITVLAILSAC 444
            G E  A  +T+L +L AC
Sbjct: 343 QGEEMKANEVTILNVLPAC 361



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 141/262 (53%), Gaps = 7/262 (2%)

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV---KPTRVTLTIVLLACAELRDLRNGK 251
           N  S+   I+   ++ N  T + L ++  +         +  + ++L AC   +D+  G+
Sbjct: 4   NRPSFLQEIAALCETDNLTTALILIQSHSQNAAFISLQAKEAIGLLLQACGNQKDIETGR 63

Query: 252 AIHGY-AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQ 310
            +H + +    +  D+ L+  L+ MY  C   L  +R++F+  + K+++ W++++ GY++
Sbjct: 64  RLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPL-DSRLVFDNMETKNLIQWNALVSGYTR 122

Query: 311 SGDLSEAMKLFSRMRLE-RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
           +G   + +K+F  +  +   +P++ T  +++ +C     +  G  +H  ++K GL  DV 
Sbjct: 123 NGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVF 182

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM-QES 428
           +GNAL+ MY KCG++  + ++F+ M   + VSW ++I  +  +G+  ++  L +EM  E 
Sbjct: 183 VGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEE 242

Query: 429 GVEPDAITVLAILSACNHAGLV 450
           G+ PD +TV+ IL  C   G V
Sbjct: 243 GLLPDVVTVVTILPVCAGEGEV 264


>gi|357468777|ref|XP_003604673.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
 gi|355505728|gb|AES86870.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
          Length = 838

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 182/546 (33%), Positives = 303/546 (55%), Gaps = 5/546 (0%)

Query: 34  IKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRD 93
           +K+CA        G  +H    K   D D  + ++LI +Y K  +   A ++F E P  D
Sbjct: 249 LKSCA-GLRKLLLGKVIHGFLKKVRIDGDMFVGSALIDLYTKCGQMNDAVKVFMEYPKPD 307

Query: 94  TISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAEL-LAGIISLCSQIGELELGRQIH 152
            + W SII+ + Q+G    +L  F  M +   V    + L  + S C+Q+   +LGR +H
Sbjct: 308 VVLWTSIISGYEQSGSPELALAFFSRMVVSEKVSPDPVTLVSVASACAQLSNFKLGRSVH 367

Query: 153 ALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNY 212
             V   G  +  + ++ +LL LY K      A  +F +M  ++ +SW+ M++   D+   
Sbjct: 368 GFVKRKG-LDNKLCLANSLLHLYGKTGSIKNASNLFREMSDKDIISWSTMVACYADNGAE 426

Query: 213 DTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAAL 272
              +DLF  M  + +KP  VT+  VL ACA + +L  G  IH  A   GF+ +  +S AL
Sbjct: 427 TDVLDLFNEMLDKRIKPNWVTVVSVLRACACISNLEEGMKIHELAVNYGFEMETTVSTAL 486

Query: 273 MHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPN 332
           M MY +C      A  +F R   KDV+ W+ +  GY+ +G + E+M +F  M      P+
Sbjct: 487 MDMYMKCFSP-EKAVDLFNRMPKKDVIAWAVLFSGYADNGMVHESMWVFRNMLSSGTRPD 545

Query: 333 SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFN 392
           ++ L+ IL++ +    L   + +H +++K G   +  IG +L+ +Y+KC SI  ++++F 
Sbjct: 546 AIALVKILTTISELGILQQAVCLHAFVIKNGFENNQFIGASLIEVYAKCSSIEDANKVFK 605

Query: 393 EMAARDFVSWTTLISGYGFHGYGEEALQLFLEM-QESGVEPDAITVLAILSACNHAGLVK 451
            M  +D V+W+++I+ YGFHG GEEAL+LF +M   S  +P+ +T ++ILSAC+H+GL+K
Sbjct: 606 GMTYKDVVTWSSIIAAYGFHGQGEEALKLFYQMANHSDTKPNNVTFISILSACSHSGLIK 665

Query: 452 EAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSA 511
           E   +F+ ++ + K+    EHYA  VDLLG+ G+++ A  V++ MPM+    I  +L+ A
Sbjct: 666 EGINMFDIMVNKYKLKPNSEHYAIMVDLLGRMGELDMALDVINNMPMQAGPDIWGALLGA 725

Query: 512 CRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSY 571
           CRIH  +++ E+ A  L   +P +A  Y LLS + S   NW  A ++ R+++ K L+K  
Sbjct: 726 CRIHQNIKMGEVAAKNLFSLDPNHAGYYILLSNIYSVDENWHSATKLRRLVKEKRLNKIV 785

Query: 572 GFSRIE 577
           G S +E
Sbjct: 786 GQSVVE 791



 Score =  251 bits (640), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 163/517 (31%), Positives = 272/517 (52%), Gaps = 26/517 (5%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           QLH   LK+G   D  I   L  +YA+++    A++LF E P+R    WN+++  +   G
Sbjct: 157 QLHSQCLKAGLVHDSFIVTKLNVLYARYASIHHAHKLFQETPHRTVYLWNALLRSYCFEG 216

Query: 109 FYVRSLEMFREMYLCGFVLKAEL-----LAGIISLCSQIGELELGRQIHAL---VIVDGS 160
            +V +L +FR+M     V   E      ++  +  C+ + +L LG+ IH     V +DG 
Sbjct: 217 EWVETLSLFRQMNNVSSVSIEERPDNYSVSIALKSCAGLRKLLLGKVIHGFLKKVRIDGD 276

Query: 161 FELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLF- 219
               +FV +AL+DLY+KC     A++VF +    + V WT++ISG   S + +  +  F 
Sbjct: 277 ----MFVGSALIDLYTKCGQMNDAVKVFMEYPKPDVVLWTSIISGYEQSGSPELALAFFS 332

Query: 220 RAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCEC 279
           R +  E V P  VTL  V  ACA+L + + G+++HG+    G D    L+ +L+H+Y + 
Sbjct: 333 RMVVSEKVSPDPVTLVSVASACAQLSNFKLGRSVHGFVKRKGLDNKLCLANSLLHLYGK- 391

Query: 280 TEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAI 339
           T ++  A  +F     KD++ WS+++  Y+ +G  ++ + LF+ M  +RI+PN VT++++
Sbjct: 392 TGSIKNASNLFREMSDKDIISWSTMVACYADNGAETDVLDLFNEMLDKRIKPNWVTVVSV 451

Query: 340 LSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDF 399
           L +C   S L  G+ +H   +  G   + ++  ALM+MY KC S   +  +FN M  +D 
Sbjct: 452 LRACACISNLEEGMKIHELAVNYGFEMETTVSTALMDMYMKCFSPEKAVDLFNRMPKKDV 511

Query: 400 VSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNN 459
           ++W  L SGY  +G   E++ +F  M  SG  PDAI ++ IL+  +  G++++A  L   
Sbjct: 512 IAWAVLFSGYADNGMVHESMWVFRNMLSSGTRPDAIALVKILTTISELGILQQAVCLHAF 571

Query: 460 VMKEKKIALAIEHY----ACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIH 515
           V+K        E+     A  +++  K   IEDA KV   M  K      SS+++A   H
Sbjct: 572 VIKN-----GFENNQFIGASLIEVYAKCSSIEDANKVFKGMTYK-DVVTWSSIIAAYGFH 625

Query: 516 GRLEVAEMLAHQLIEAEPENAANYTLLSMV--CSESG 550
           G+ E A  L +Q+         N T +S++  CS SG
Sbjct: 626 GQGEEALKLFYQMANHSDTKPNNVTFISILSACSHSG 662


>gi|307136370|gb|ADN34182.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
           melo]
          Length = 1131

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 186/548 (33%), Positives = 302/548 (55%), Gaps = 5/548 (0%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPY 91
           S+  ACA +  +  FG QLH   +K+   ++  ++N+L+ MYAK    + A + F+ M  
Sbjct: 415 SIFSACA-SLHYLDFGGQLHTVMIKNKFTSNLFVANALVDMYAKSGALKEARKQFEFMKI 473

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQI 151
            D +SWN+II  + Q  +   +  MFR M   G +     LA I+S C+ + E + G+Q 
Sbjct: 474 HDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVKEFKQGQQC 533

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQN 211
           H L++  G  + S    ++L+D+Y KC   L A  VF  M  RN VS  A+I+G   S  
Sbjct: 534 HCLLVKVG-LDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPYRNVVSINALIAGYTMSH- 591

Query: 212 YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGF-DFDHHLSA 270
            +  I LF+ +Q  G+KPT VT   +L  C     L  G+ IHG     GF      +  
Sbjct: 592 LEEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCV 651

Query: 271 ALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE 330
           +L+ MY           +  E    K +V+W+++I GY+Q     +A++ +  MR + I 
Sbjct: 652 SLLCMYMNSQRFADSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNIL 711

Query: 331 PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQI 390
           P+  T  ++L +C   S L  G  VH  I   G N D    ++L++MY+KCG +  S Q+
Sbjct: 712 PDQATFASVLRACAGMSSLQTGQEVHSLIFHTGFNMDEITCSSLIDMYAKCGDVKGSLQV 771

Query: 391 FNEMAARD-FVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL 449
           F+EM  R+  +SW ++I G   +GY EEAL++F +M++  + PD +T L +LSAC+HAG 
Sbjct: 772 FHEMPRRNSVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSACSHAGR 831

Query: 450 VKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLV 509
           V E   +F+ ++   K+   ++H  C VD+LG+ G + +A + ++ +  K    + S+L+
Sbjct: 832 VSEGRKVFDLMVNNYKLQPRVDHLGCMVDILGRWGFLNEAEEFINKLGCKADPMLWSTLL 891

Query: 510 SACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSK 569
            ACR HG     +  A++L+E +P+++++Y LLS + +ES NW GA+ + R M+ KG+ K
Sbjct: 892 GACRKHGDEVRGKRAANKLMELKPQSSSSYVLLSGLYAESENWSGADSLRREMKLKGVKK 951

Query: 570 SYGFSRIE 577
             G+S IE
Sbjct: 952 LPGYSWIE 959



 Score =  228 bits (582), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 161/572 (28%), Positives = 282/572 (49%), Gaps = 19/572 (3%)

Query: 1   MVSKH----FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALK 56
           M+S H    F E+ +  +  EL  +GL +  + L SV+ A A + +  ++G  +H  A+K
Sbjct: 280 MISGHAKRGFAEEAISFF-LELKKTGLKATRSSLGSVLSAIA-SLSMLNYGSMVHAQAIK 337

Query: 57  SGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEM 116
            G D +  + ++L++MYAK SK ++A Q+F+ +  R+ + WN+++  F QNG     +E 
Sbjct: 338 EGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEF 397

Query: 117 FREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYS 176
           F  M   G          I S C+ +  L+ G Q+H  V++   F  ++FV+ AL+D+Y+
Sbjct: 398 FSYMKRHGPQPDEFTFTSIFSACASLHYLDFGGQLHT-VMIKNKFTSNLFVANALVDMYA 456

Query: 177 KCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTI 236
           K      A + FE M I + VSW A+I G +  +  D    +FR M   GV P  V+L  
Sbjct: 457 KSGALKEARKQFEFMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLAS 516

Query: 237 VLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK 296
           ++ ACA +++ + G+  H      G D      ++L+ MY +C   L  AR +F     +
Sbjct: 517 IVSACANVKEFKQGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVL-AARDVFYSMPYR 575

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVH 356
           +VV  +++I GY+ S  L EA+ LF  +++  ++P  VT   +L  C     L+ G  +H
Sbjct: 576 NVVSINALIAGYTMS-HLEEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIH 634

Query: 357 CYIMKAG-LNFDVSIGNALMNMYSKCGSITSSHQIFNEMA-ARDFVSWTTLISGYGFHGY 414
             +MK G L+    +  +L+ MY        S  +F+E+   +  V WT LISGY    +
Sbjct: 635 GQVMKWGFLSSSEMVCVSLLCMYMNSQRFADSETLFSELQYPKGLVVWTALISGYAQQNH 694

Query: 415 GEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYA 474
            E+ALQ +  M+   + PD  T  ++L AC     ++  + + + +         ++   
Sbjct: 695 HEKALQFYQHMRSDNILPDQATFASVLRACAGMSSLQTGQEVHSLIF---HTGFNMDEIT 751

Query: 475 C--YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE 532
           C   +D+  K G ++ + +V   MP + S    +S++     +G  E A  +  Q+ +  
Sbjct: 752 CSSLIDMYAKCGDVKGSLQVFHEMPRRNSVISWNSMIVGLAKNGYAEEALEIFKQMEQQS 811

Query: 533 --PENAANYTLLSMVCSESGNWLGAEEVWRVM 562
             P+      +LS  CS +G      +V+ +M
Sbjct: 812 IIPDEVTFLGVLS-ACSHAGRVSEGRKVFDLM 842



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 124/407 (30%), Positives = 206/407 (50%), Gaps = 3/407 (0%)

Query: 56  KSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLE 115
           + G   D +   ++I+ Y    +   A +LF ++P  + ++WN +I+   + GF   ++ 
Sbjct: 236 RVGHVPDQIALVTVINAYVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAIS 295

Query: 116 MFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLY 175
            F E+   G       L  ++S  + +  L  G  +HA  I +G  + +V+V +AL+++Y
Sbjct: 296 FFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQAIKEG-LDDNVYVGSALVNMY 354

Query: 176 SKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLT 235
           +KC     A +VF  +  RN V W AM+ G   +      ++ F  M+R G +P   T T
Sbjct: 355 AKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSYMKRHGPQPDEFTFT 414

Query: 236 IVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV 295
            +  ACA L  L  G  +H       F  +  ++ AL+ MY + + AL  AR  FE  K+
Sbjct: 415 SIFSACASLHYLDFGGQLHTVMIKNKFTSNLFVANALVDMYAK-SGALKEARKQFEFMKI 473

Query: 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV 355
            D V W++II GY Q     EA  +F RM    + P+ V+L +I+S+C        G   
Sbjct: 474 HDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVKEFKQGQQC 533

Query: 356 HCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYG 415
           HC ++K GL+     G++L++MY KCG + ++  +F  M  R+ VS   LI+GY    + 
Sbjct: 534 HCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPYRNVVSINALIAGYTM-SHL 592

Query: 416 EEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462
           EEA+ LF E+Q  G++P  +T   +L  C+ A ++     +   VMK
Sbjct: 593 EEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMK 639



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 130/487 (26%), Positives = 228/487 (46%), Gaps = 47/487 (9%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G+  N      V+ AC+  Q   ++G Q+HC   K G          LI MYAK      
Sbjct: 137 GVRPNEFTFAMVLSACSGLQD-INYGKQVHCGVFKMGFGFRSFCQGGLIDMYAKCRNLRD 195

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A  +FD     DT+SW ++I  + ++GF + ++++F +M   G V     L  +I+    
Sbjct: 196 ARLVFDGALNLDTVSWTTLIAGYVRDGFPMEAVKVFDKMQRVGHVPDQIALVTVINAYVA 255

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
           +G L   R                                    ++F Q+   N V+W  
Sbjct: 256 LGRLADAR------------------------------------KLFTQIPNPNVVAWNV 279

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           MISG       +  I  F  +++ G+K TR +L  VL A A L  L  G  +H  A   G
Sbjct: 280 MISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQAIKEG 339

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
            D + ++ +AL++MY +C++ +  A+ +F     +++V+W++++ G++Q+G   E M+ F
Sbjct: 340 LDDNVYVGSALVNMYAKCSK-MDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFF 398

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
           S M+    +P+  T  +I S+C    +L  G  +H  ++K     ++ + NAL++MY+K 
Sbjct: 399 SYMKRHGPQPDEFTFTSIFSACASLHYLDFGGQLHTVMIKNKFTSNLFVANALVDMYAKS 458

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
           G++  + + F  M   D VSW  +I GY    Y +EA  +F  M  +GV PD +++ +I+
Sbjct: 459 GALKEARKQFEFMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIV 518

Query: 442 SACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC----YVDLLGKSGKIEDACKVVSTMP 497
           SAC +    K+ +     ++K     + ++   C     +D+  K G +  A  V  +MP
Sbjct: 519 SACANVKEFKQGQQCHCLLVK-----VGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMP 573

Query: 498 MKPSTRI 504
            +    I
Sbjct: 574 YRNVVSI 580



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 116/449 (25%), Positives = 211/449 (46%), Gaps = 38/449 (8%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           +H  +LK G     ++ N ++ +Y K    + A + F  +  +D  +WNS+++ +  +G 
Sbjct: 63  IHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGL 122

Query: 110 YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVST 169
           +   ++ F  M+  G        A ++S CS + ++  G+Q+H  V   G F    F   
Sbjct: 123 FATVVQSFVCMWNHGVRPNEFTFAMVLSACSGLQDINYGKQVHCGVFKMG-FGFRSFCQG 181

Query: 170 ALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKP 229
            L+D+Y+KC +   A  VF+  +  + VSWT +I+G +        + +F  MQR G  P
Sbjct: 182 GLIDMYAKCRNLRDARLVFDGALNLDTVSWTTLIAGYVRDGFPMEAVKVFDKMQRVGHVP 241

Query: 230 TRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARII 289
            ++ L  V+ A   L  L +                                    AR +
Sbjct: 242 DQIALVTVINAYVALGRLAD------------------------------------ARKL 265

Query: 290 FERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFL 349
           F +    +VV W+ +I G+++ G   EA+  F  ++   ++    +L ++LS+    S L
Sbjct: 266 FTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSML 325

Query: 350 SHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGY 409
           ++G  VH   +K GL+ +V +G+AL+NMY+KC  + ++ Q+FN +  R+ V W  ++ G+
Sbjct: 326 NYGSMVHAQAIKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGF 385

Query: 410 GFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA 469
             +G  +E ++ F  M+  G +PD  T  +I SAC     +     L + VM + K    
Sbjct: 386 AQNGLAQEVMEFFSYMKRHGPQPDEFTFTSIFSACASLHYLDFGGQL-HTVMIKNKFTSN 444

Query: 470 IEHYACYVDLLGKSGKIEDACKVVSTMPM 498
           +      VD+  KSG +++A K    M +
Sbjct: 445 LFVANALVDMYAKSGALKEARKQFEFMKI 473



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 136/292 (46%), Gaps = 9/292 (3%)

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A L+ L   K IH  +   G      L   ++ +Y +C   +  A+  F R + KDV  W
Sbjct: 52  AVLQALSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGN-VDFAQKAFSRLEKKDVFAW 110

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           +S++  Y   G  +  ++ F  M    + PN  T   +LS+C+    +++G  VHC + K
Sbjct: 111 NSVLSMYLDHGLFATVVQSFVCMWNHGVRPNEFTFAMVLSACSGLQDINYGKQVHCGVFK 170

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
            G  F       L++MY+KC ++  +  +F+     D VSWTTLI+GY   G+  EA+++
Sbjct: 171 MGFGFRSFCQGGLIDMYAKCRNLRDARLVFDGALNLDTVSWTTLIAGYVRDGFPMEAVKV 230

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
           F +MQ  G  PD I ++ +++A    G + +A  LF  +     +A     +   +    
Sbjct: 231 FDKMQRVGHVPDQIALVTVINAYVALGRLADARKLFTQIPNPNVVA-----WNVMISGHA 285

Query: 482 KSGKIEDACKV---VSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE 530
           K G  E+A      +    +K +   L S++SA      L    M+  Q I+
Sbjct: 286 KRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQAIK 337


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 184/538 (34%), Positives = 298/538 (55%), Gaps = 14/538 (2%)

Query: 46  FGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT 105
            G Q+HC ALK G D    +SNSLI+MY K  K   A  +F+ M  RD ISWNS+I    
Sbjct: 340 LGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIA 399

Query: 106 QNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGE-LELGRQIHALVIVDGSFELS 164
           Q+   V ++ +F ++  CG       +  ++   S + E L L +QIH   I   +   S
Sbjct: 400 QSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADS 459

Query: 165 VFVSTALLDLYSKCHHWLIALRVFEQMVIRNE---VSWTAMISGCIDSQNYDTGIDLFRA 221
            FVSTAL+D YS+       ++  E +  RN    V+W AM+SG   S +    ++LF  
Sbjct: 460 -FVSTALIDAYSRNR----CMKEAEVLFGRNNFDLVAWNAMMSGYTQSHDGHKTLELFAL 514

Query: 222 MQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTE 281
           M ++G +    TL  VL  C  L  +  GK +H YA   G+D D  +S+ ++ MY +C +
Sbjct: 515 MHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGD 574

Query: 282 ALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTL--LAI 339
            +  A+  F+   V D V W+++I G  ++G+   A+ +FS+MRL  + P+  T+  LA 
Sbjct: 575 -MSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAK 633

Query: 340 LSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDF 399
            SSC   + L  G  +H   +K     D  +G +L++MY+KCGSI  ++ +F  +   + 
Sbjct: 634 ASSCL--TALEQGRQIHANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNI 691

Query: 400 VSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNN 459
            +W  ++ G   HG G+EALQLF +M+  G++PD +T + +LSAC+H+GLV EA     +
Sbjct: 692 TAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRS 751

Query: 460 VMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLE 519
           + ++  I   IEHY+C  D LG++G +++A  ++ +M M+ S  +  +L++ACR+ G  E
Sbjct: 752 MHRDYGIKPEIEHYSCLADALGRAGLVKEAENLIDSMSMEASASMYRTLLAACRVQGDTE 811

Query: 520 VAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
             + +A +L+E EP +++ Y LLS + + +  W   +    +M+   + K  GFS IE
Sbjct: 812 TGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIE 869



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 113/447 (25%), Positives = 222/447 (49%), Gaps = 7/447 (1%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           GL  +   + SV+KA +          Q+H  A+K+ + AD  +S +LI  Y++    + 
Sbjct: 418 GLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKE 477

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A  LF    + D ++WN++++ +TQ+    ++LE+F  M+  G       LA ++  C  
Sbjct: 478 AEVLFGRNNF-DLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGF 536

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
           +  +  G+Q+HA  I  G ++L ++VS+ +LD+Y KC     A   F+ + + ++V+WT 
Sbjct: 537 LFAINQGKQVHAYAIKSG-YDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTT 595

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           +ISGCI++   +  + +F  M+  GV P   T+  +  A + L  L  G+ IH  A    
Sbjct: 596 LISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLN 655

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
              D  +  +L+ MY +C  ++  A  +F+R ++ ++  W++++ G +Q G+  EA++LF
Sbjct: 656 CTSDPFVGTSLVDMYAKCG-SIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKEALQLF 714

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG-VHCYIMKAGLNFDVSIGNALMNMYSK 380
            +M    I+P+ VT + +LS+C+    +S     +       G+  ++   + L +   +
Sbjct: 715 KQMESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPEIEHYSCLADALGR 774

Query: 381 CGSITSSHQIFNEMAARDFVS-WTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
            G +  +  + + M+     S + TL++     G  E   ++  ++ E  +EP   +   
Sbjct: 775 AGLVKEAENLIDSMSMEASASMYRTLLAACRVQGDTETGKRVATKLLE--LEPLDSSAYV 832

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKI 466
           +LS    A    +   L   +MK  K+
Sbjct: 833 LLSNMYAAASKWDEMKLARTMMKGHKV 859



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 109/402 (27%), Positives = 188/402 (46%), Gaps = 43/402 (10%)

Query: 51  HCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFY 110
           H   L    + +  + N+LISMY+K      A ++FD+MP RD +SWNSI+  + Q+   
Sbjct: 69  HARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQSSEG 128

Query: 111 VRSLEMFREMYLCGFVLKAEL-------LAGIISLCSQIGELELGRQIHALVIVDGSFEL 163
           V  +E  +E +L   +L+ ++       L+ ++ LC   G +      H      G  + 
Sbjct: 129 V--VENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIG-LDG 185

Query: 164 SVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQ 223
             FV+ AL+++Y K         +FE+M  R+ V W  M+   ++    +  IDL  A  
Sbjct: 186 DDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFH 245

Query: 224 REGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEAL 283
             G+ P  +TL   LL+     D   G+          F+  +  SA             
Sbjct: 246 TSGLHPNEITLR--LLSRISGDDSEAGQVK-------SFENGNDASA------------- 283

Query: 284 HPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC 343
                      V +++  + I+ GY  +G  S  +K F  M    +E + VT + +L++ 
Sbjct: 284 -----------VSEIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATA 332

Query: 344 TRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWT 403
            R   L+ G  VHC  +K GL+  +++ N+L+NMY K   I  +  +FN M+ RD +SW 
Sbjct: 333 VRLDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWN 392

Query: 404 TLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
           ++I+G        EA+ LF+++   G++PD  T+ ++L A +
Sbjct: 393 SVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAAS 434



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 121/509 (23%), Positives = 225/509 (44%), Gaps = 57/509 (11%)

Query: 23  LYSNTAILPSVIKAC---AYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKP 79
           +Y++   L  ++K C    Y    + F    H  A K G D D  ++ +L+++Y KF K 
Sbjct: 148 VYTSRMTLSPMLKLCLHSGYVCASESF----HGYACKIGLDGDDFVAGALVNIYLKFGKV 203

Query: 80  ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF---VLKAELLAGII 136
           +    LF+EMPYRD + WN ++  + + GF   ++++    +  G     +   LL+ I 
Sbjct: 204 KEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEITLRLLSRIS 263

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
              S+ G+++             SFE     S                     +++ RN+
Sbjct: 264 GDDSEAGQVK-------------SFENGNDASAV------------------SEIISRNK 292

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           +     +SG + +  Y   +  F  M    ++  +VT  +VL     L  L  G+ +H  
Sbjct: 293 I-----LSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCM 347

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
           A   G D    +S +L++MYC+  + +  AR +F     +D++ W+S+I G +QS    E
Sbjct: 348 ALKLGLDLMLTVSNSLINMYCKLRK-IGLARTVFNNMSERDLISWNSVIAGIAQSDLEVE 406

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG----VHCYIMKAGLNFDVSIGN 372
           A+ LF ++    ++P+  T+ ++L +    S L  GL     +H + +K     D  +  
Sbjct: 407 AVCLFMQLLRCGLKPDHYTMTSVLKAA---SSLPEGLSLSKQIHVHAIKTNNVADSFVST 463

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
           AL++ YS+   +  +  +F      D V+W  ++SGY     G + L+LF  M + G   
Sbjct: 464 ALIDAYSRNRCMKEAEVLFGR-NNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERS 522

Query: 433 DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKV 492
           D  T+  +L  C     + + + +    +K     L +   +  +D+  K G +  A   
Sbjct: 523 DDFTLATVLKTCGFLFAINQGKQVHAYAIKS-GYDLDLWVSSGILDMYVKCGDMSAAQFA 581

Query: 493 VSTMPMKPSTRILSSLVSACRIHGRLEVA 521
             ++P+ P     ++L+S C  +G  E A
Sbjct: 582 FDSIPV-PDDVAWTTLISGCIENGEEERA 609



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 141/304 (46%), Gaps = 39/304 (12%)

Query: 144 ELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMI 203
           +L LG+  HA ++         F+   L+ +YSKC     A RVF++M  R+ VSW +++
Sbjct: 61  DLMLGKCTHARILALEE-NPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSIL 119

Query: 204 SGCIDS-----QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258
           +    S     +N      LFR ++++ V  +R+TL+ +L  C     +   ++ HGYA 
Sbjct: 120 AAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYAC 179

Query: 259 CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAM 318
             G D D  ++ AL+++Y +  + +   R++FE    +DVV+W+ +++ Y + G   EA+
Sbjct: 180 KIGLDGDDFVAGALVNIYLKFGK-VKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAI 238

Query: 319 KLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMY 378
            L S      + PN +T L +LS  +                                  
Sbjct: 239 DLSSAFHTSGLHPNEIT-LRLLSRISGDD------------------------------- 266

Query: 379 SKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
           S+ G + S     +  A  + +S   ++SGY   G     L+ F++M ES +E D +T +
Sbjct: 267 SEAGQVKSFENGNDASAVSEIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFI 326

Query: 439 AILS 442
            +L+
Sbjct: 327 LVLA 330



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 106/219 (48%), Gaps = 11/219 (5%)

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
           DL  GK  H        + +  L   L+ MY +C  +L  AR +F++   +D+V W+SI+
Sbjct: 61  DLMLGKCTHARILALEENPERFLVNNLISMYSKCG-SLTYARRVFDKMPERDLVSWNSIL 119

Query: 306 RGYSQSG-----DLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
             Y+QS      ++ EA  LF  +R + +  + +TL  +L  C    ++      H Y  
Sbjct: 120 AAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYAC 179

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
           K GL+ D  +  AL+N+Y K G +     +F EM  RD V W  ++  Y   G+ EEA+ 
Sbjct: 180 KIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAID 239

Query: 421 LFLEMQESGVEPDAITVLAILSAC----NHAGLVKEAET 455
           L      SG+ P+ IT L +LS      + AG VK  E 
Sbjct: 240 LSSAFHTSGLHPNEIT-LRLLSRISGDDSEAGQVKSFEN 277



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 81/170 (47%), Gaps = 10/170 (5%)

Query: 337 LAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA 396
              L      S L  G   H  I+    N +  + N L++MYSKCGS+T + ++F++M  
Sbjct: 50  FGFLRDAISTSDLMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPE 109

Query: 397 RDFVSWTTLISGYGFHGYG-----EEALQLFLEMQESGVEPDAITVLAILSACNHAGLVK 451
           RD VSW ++++ Y     G     +EA  LF  +++  V    +T+  +L  C H+G V 
Sbjct: 110 RDLVSWNSILAAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVC 169

Query: 452 EAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDACKVVSTMPMK 499
            +E+         KI L  + +     V++  K GK+++   +   MP +
Sbjct: 170 ASESFHGYAC---KIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYR 216


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 181/592 (30%), Positives = 317/592 (53%), Gaps = 34/592 (5%)

Query: 18  LHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFS 77
           +  SG  SN   L S++ A A        G +LH   +++  ++D ++ ++L+ MY+K  
Sbjct: 368 MQESGYKSNRFNLGSILMASA-GLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCG 426

Query: 78  KPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAEL-LAGII 136
             E A+Q+F  +  R+ +S+N+++  + Q G    +LE++ +M     +   +     ++
Sbjct: 427 MVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLL 486

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
           +LC+       GRQIHA +I   +   ++ V T L+ +YS+C     A  +F +M  RN 
Sbjct: 487 TLCANQRNDNQGRQIHAHLI-RANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNA 545

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
            SW +MI G   +      + LF+ MQ  G+KP   +L+ +L +C  L D + G+ +H +
Sbjct: 546 YSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNF 605

Query: 257 AYCCGFDFDHHLSAALMHMYCEC------------------------------TEALHPA 286
                 + +  L   L+ MY +C                              +   + A
Sbjct: 606 IVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDA 665

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
           + +F++ + ++  +W+SI+ GY+  G   E+   F  M    IE + +T++ I++ C+  
Sbjct: 666 KNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSL 725

Query: 347 SFLSHGLGVHCYIMKAG-LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
             L HG  +H  I+K G +N  V +  AL++MYSKCG+IT +  +F+ M  ++ VSW  +
Sbjct: 726 PALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAM 785

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           ISGY  HG  +EAL L+ EM + G+ P+ +T LAILSAC+H GLV+E   +F ++ ++  
Sbjct: 786 ISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYN 845

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
           I    EHY C VDLLG++G++EDA + V  MP++P      +L+ ACR+H  +++  + A
Sbjct: 846 IEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAA 905

Query: 526 HQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +L E +P+N   Y ++S + + +G W   E++ ++M+ KG+ K  G S IE
Sbjct: 906 QRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIE 957



 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 161/539 (29%), Positives = 279/539 (51%), Gaps = 24/539 (4%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           Y + L LY + +  SG +S+    PSVIKAC  A        QL  + +K+G + +  + 
Sbjct: 156 YMEVLRLYGR-MRGSGNFSDKFTFPSVIKACI-AMEDMGGVRQLQSSVVKAGLNCNLFVG 213

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
            +L+  YA+F   + A    DE+     ++WN++I  + +   +  +  +F  M   G  
Sbjct: 214 GALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVC 273

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
                 A  + +C  +   + G+Q+H+ +I  G F+   FV  AL+D+Y+KC      L+
Sbjct: 274 PDNFTFASALRVCGALRSRDGGKQVHSKLIACG-FKGDTFVGNALIDMYAKCDDEESCLK 332

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VF++M  RN+V+W ++IS      +++  + LF  MQ  G K  R  L  +L+A A L D
Sbjct: 333 VFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLAD 392

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCEC---TEALHPARIIFERTKVKDVVIWSS 303
           +  G+ +HG+      + D  L +AL+ MY +C    EA    R + ER +V     +++
Sbjct: 393 IGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVS----YNA 448

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLER-IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
           ++ GY Q G   EA++L+  M+ E  I+P+  T   +L+ C  Q   + G  +H ++++A
Sbjct: 449 LLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRA 508

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
            +  ++ +   L++MYS+CG +  + +IFN MA R+  SW ++I GY  +G  +EAL+LF
Sbjct: 509 NITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLF 568

Query: 423 LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFN----NVMKEKKIALAIEHYACYVD 478
            +MQ +G++PD  ++ ++LS+C      ++   L N    N M+E+ I   +      VD
Sbjct: 569 KQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVV-----LVD 623

Query: 479 LLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAA 537
           +  K G ++ A KV     +K    + + +VSA    GR   A+ L  Q+   E  N A
Sbjct: 624 MYAKCGSMDYAWKVYD-QTIKKDVILNNVMVSAFVNSGRANDAKNLFDQM---EQRNTA 678



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 137/527 (25%), Positives = 255/527 (48%), Gaps = 42/527 (7%)

Query: 25  SNTAILP--SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES- 81
           S+   LP  S+I+ C  + + Q  G  +H   + +G + D  +   ++ +YA+    +  
Sbjct: 67  SDVNPLPYSSLIQDCIDSNSFQR-GKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDL 125

Query: 82  --AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLC 139
             A +LF+EMP R+  +WN++I  + +   Y+  L ++  M   G          +I  C
Sbjct: 126 CYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKAC 185

Query: 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSW 199
             + ++   RQ+ + V+  G    ++FV  AL+D Y++      A+   +++   + V+W
Sbjct: 186 IAMEDMGGVRQLQSSVVKAG-LNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTW 244

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
            A+I+G +   +++    +F  M + GV P   T    L  C  LR    GK +H     
Sbjct: 245 NAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIA 304

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
           CGF  D  +  AL+ MY +C +     ++ F+    ++ V W+SII   +Q G  ++A+ 
Sbjct: 305 CGFKGDTFVGNALIDMYAKCDDEESCLKV-FDEMGERNQVTWNSIISAEAQFGHFNDALV 363

Query: 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           LF RM+    + N   L +IL +    + +  G  +H ++++  LN D+ +G+AL++MYS
Sbjct: 364 LFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYS 423

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ-ESGVEPDAITVL 438
           KCG +  +HQ+F  +  R+ VS+  L++GY   G  EEAL+L+ +MQ E G++PD  T  
Sbjct: 424 KCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFT 483

Query: 439 AILSAC-----NHAGLVKEAETLFNNVMKEKKIALAIEH--------------------- 472
            +L+ C     ++ G    A  +  N+ K   +   + H                     
Sbjct: 484 TLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAER 543

Query: 473 ----YACYVDLLGKSGKIEDACKVVSTMPM---KPSTRILSSLVSAC 512
               +   ++   ++G+ ++A ++   M +   KP    LSS++S+C
Sbjct: 544 NAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSC 590


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  322 bits (826), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 190/591 (32%), Positives = 305/591 (51%), Gaps = 38/591 (6%)

Query: 20  PSGLYSNTAILP-SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK--F 76
           P+ L S     P S+IK C      +    Q  CT L S    +P++   +I+   K   
Sbjct: 11  PTHLPSLPQTPPLSLIKTCKSMAQLKQIHSQTICTGLIS----NPIVPAQIIAFCCKHEL 66

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
              E A  +FD MP  +   WN++I  +++ G    ++ M+ EM   G +        ++
Sbjct: 67  GDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLL 126

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
              ++   ++ GR++H  ++  G F  +VFV  AL+ LYS      +A  VF++    + 
Sbjct: 127 KRFTRDTAVKCGRELHDHIVKLG-FSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDV 185

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           V+W  MISG   S+ +D  + LF  M+R  V P+ +TL  VL AC++L+DL  GK +H Y
Sbjct: 186 VTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRY 245

Query: 257 AYCCGFDFDHHLSAALMHMYCECTE------------------------------ALHPA 286
                 +    L  AL+ MY  C +                               +  A
Sbjct: 246 VKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLA 305

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
           R  F++   +D V W+++I GY Q     E + LF  M+   I+P+  T+++IL++C   
Sbjct: 306 RNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHL 365

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
             L  G  +  YI K  +  D  +GNAL++MY  CG++  + +IFN M  RD +SWT +I
Sbjct: 366 GALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVI 425

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
            G   +GYGEEAL +F +M ++ + PD +T + +L AC H+G+V + +  F  +  +  I
Sbjct: 426 FGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGI 485

Query: 467 ALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAH 526
              + HY C VDLLG++G +++A +V+  MP+KP++ +  SL+ ACR+H   E+AEM A 
Sbjct: 486 EPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQ 545

Query: 527 QLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           Q++E EPEN A Y LL  + +    W    EV ++M  +G+ K+ G S IE
Sbjct: 546 QILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIE 596


>gi|255559012|ref|XP_002520529.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540371|gb|EEF41942.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 606

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 181/558 (32%), Positives = 315/558 (56%), Gaps = 16/558 (2%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           +G +SN   +  V+  CA   ++   G+QLH T ++ G  ++  I ++++ MYAK S+ +
Sbjct: 63  NGSFSNPYFINKVVSFCAKFASYD-LGIQLHSTIIRMGFTSNVHICSAVVDMYAKCSEIQ 121

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV-LKAELLAGIISLC 139
           SA+++F+EMP R+ ++WNS+I                  M  C    + +  ++  + +C
Sbjct: 122 SAHEVFNEMPERNDVTWNSLI------------FGYLNVMPTCAMRGVTSFSVSTCLVVC 169

Query: 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSW 199
           SQ+     G Q+H L +  G F+ +VFV TAL+D+YSKC     + RVF+ MV +N V+W
Sbjct: 170 SQLEVRNFGAQVHGLSLKLG-FDNNVFVGTALIDMYSKCDGVDDSWRVFDYMVDKNVVTW 228

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
           TAM++    ++  D  + L R M R G+K   VT   +L + +  + ++  K +H     
Sbjct: 229 TAMVTAYAQNEQPDEAMILVREMMRLGIKANYVTYNSLLSSFSGPKYMQYCKQVHCSIIR 288

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
           CG + + +++A L+ +Y +CT  L     I    ++ D + W+++I GYS  G   +A+K
Sbjct: 289 CGLECNLYIAATLVTVYSKCTNNLEDFNKISSGVQLSDQISWNAVIAGYSNLGLGEDALK 348

Query: 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
            F  MR   I+ +  T  ++L +      +  G  +H  I+K G    V + N L++MY+
Sbjct: 349 CFCEMRHANIKMDFYTFTSLLGAIGAFLAIEEGREMHALIVKTGYASSVYVQNGLVSMYA 408

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           +CG+I  S ++F  M   D VSW  L++G   HG+G EA++LF +M+++ ++P++ T LA
Sbjct: 409 RCGAIDDSKRVFWLMEDHDVVSWNALLTGCAHHGFGNEAVELFEQMRKTKIKPNSTTFLA 468

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKI-ALAIEHYACYVDLLGKSGKIEDACKVVSTMPM 498
           +LSAC+H G V +    F+ +  +  +  L +EHYA  VD+ G++G + +A  +++ MPM
Sbjct: 469 VLSACSHVGSVDKGLEYFDFMRSDISLEPLRVEHYASVVDIFGRAGYLSEAEAIINCMPM 528

Query: 499 KPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEV 558
            P   +  +L+SAC +HG  E+A   A +L+E  P++ A Y LLS + +  G W  A +V
Sbjct: 529 DPGPSVYKALLSACLVHGNREIAVRSARKLLELWPDDPATYILLSNMLATEGYWDDAADV 588

Query: 559 WRVMRAKGLSKSYGFSRI 576
            ++M  +G+ K+ G+S I
Sbjct: 589 RKLMCDRGVRKNPGYSWI 606



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 117/234 (50%), Gaps = 14/234 (5%)

Query: 210 QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS 269
           Q +D+  DLF  + R G       +  V+  CA+      G  +H      GF  + H+ 
Sbjct: 50  QTFDS--DLFAHLLRNGSFSNPYFINKVVSFCAKFASYDLGIQLHSTIIRMGFTSNVHIC 107

Query: 270 AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
           +A++ MY +C+E +  A  +F     ++ V W+S+I GY         + +     +  +
Sbjct: 108 SAVVDMYAKCSE-IQSAHEVFNEMPERNDVTWNSLIFGY---------LNVMPTCAMRGV 157

Query: 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
              SV+   ++  C++    + G  VH   +K G + +V +G AL++MYSKC  +  S +
Sbjct: 158 TSFSVSTCLVV--CSQLEVRNFGAQVHGLSLKLGFDNNVFVGTALIDMYSKCDGVDDSWR 215

Query: 390 IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
           +F+ M  ++ V+WT +++ Y  +   +EA+ L  EM   G++ + +T  ++LS+
Sbjct: 216 VFDYMVDKNVVTWTAMVTAYAQNEQPDEAMILVREMMRLGIKANYVTYNSLLSS 269


>gi|414586383|tpg|DAA36954.1| TPA: hypothetical protein ZEAMMB73_991125 [Zea mays]
          Length = 1021

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 182/581 (31%), Positives = 319/581 (54%), Gaps = 13/581 (2%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V     E+T+ ++ Q +  + L ++     SV+ AC    +    G Q+HC  +K+G DA
Sbjct: 401 VQNELQEETIQMF-QYMRRADLEADDFTFVSVLGACINLYSLD-LGRQVHCITIKNGMDA 458

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D  ++N+++ MY+K    + A  LF  +P +D++SWN++I     N     ++ M + M 
Sbjct: 459 DLFVANAMLDMYSKLGAIDVAKALFSLIPVKDSVSWNALIVGLAHNEEEGEAINMLKRMK 518

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSV----FVSTALLDLYSK 177
             G  L     A  I+ CS I  +E G+QIH+      S + +V     V ++L+DLYSK
Sbjct: 519 FYGIALDEVSFATAINACSNIWAIETGKQIHS-----ASIKYNVCSNHAVGSSLIDLYSK 573

Query: 178 CHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIV 237
                 + +V   +   + V   A+I+G + +   D  I+LF+ + ++G KP+  T T +
Sbjct: 574 FGDVESSRKVLAHVDASSIVPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFTSI 633

Query: 238 LLACAELRDLRNGKAIHGYAYCCG-FDFDHHLSAALMHMYCECTEALHPARIIFERTKVK 296
           L  C        GK +H Y       + D  L  +L+ +Y +C       +++ E    K
Sbjct: 634 LSGCTRPVSSVIGKQVHCYTLKSAILNQDTSLGISLVGIYLKCKLLEDANKLLEEVPDHK 693

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVH 356
           ++V W++ I GY+Q+G   +++ +F RMR   +  +  T  ++L +C+  + L+ G  +H
Sbjct: 694 NLVEWTATISGYAQNGYSVQSLVMFWRMRSYDVRSDEATFTSVLKACSEMAALTDGKEIH 753

Query: 357 CYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFHGYG 415
             I+K+G     +  +ALM+MYSKCG + SS +IF E+  R + + W ++I G+  +GY 
Sbjct: 754 GLIVKSGFVSYETATSALMDMYSKCGDVISSFEIFKELKNRQNIMPWNSMIVGFAKNGYA 813

Query: 416 EEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC 475
            EAL LF +MQES ++PD +T+L +L AC+HAGL+ E    F+++ +   I   ++HYAC
Sbjct: 814 NEALLLFQKMQESQIKPDDVTLLGVLIACSHAGLISEGLHFFDSMSQVYGIVPRVDHYAC 873

Query: 476 YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPEN 535
            +DLLG+ G ++ A +V+  +P +    I ++ ++AC++H   E  ++ A +L+E EP++
Sbjct: 874 LIDLLGRGGHLQKAQEVIDQLPFRADGVIWATYLAACQMHKDEERGKVAAKKLVEMEPQS 933

Query: 536 AANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
           ++ Y  LS + + +GNW+ A+     MR KG+ K  G S I
Sbjct: 934 SSTYVFLSSLHAAAGNWVEAKVAREAMREKGVMKFPGCSWI 974



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 138/546 (25%), Positives = 272/546 (49%), Gaps = 10/546 (1%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           +   LYK ++   GL    +   S++ A A        G Q+H TA+K G DA+  + +S
Sbjct: 307 EVFGLYK-DMKKQGLMPTRSTFASILSAAANMTAFDE-GRQIHATAVKHGLDANVFVGSS 364

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           LI++Y K      A ++FD    ++ + WN+I+  F QN     +++MF+ M        
Sbjct: 365 LINLYVKHGCISDAKKVFDFSTEKNIVMWNAILYGFVQNELQEETIQMFQYMRRADLEAD 424

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
                 ++  C  +  L+LGRQ+H + I +G  +  +FV+ A+LD+YSK     +A  +F
Sbjct: 425 DFTFVSVLGACINLYSLDLGRQVHCITIKNG-MDADLFVANAMLDMYSKLGAIDVAKALF 483

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
             + +++ VSW A+I G   ++     I++ + M+  G+    V+    + AC+ +  + 
Sbjct: 484 SLIPVKDSVSWNALIVGLAHNEEEGEAINMLKRMKFYGIALDEVSFATAINACSNIWAIE 543

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
            GK IH  +       +H + ++L+ +Y +  + +  +R +        +V  +++I G 
Sbjct: 544 TGKQIHSASIKYNVCSNHAVGSSLIDLYSKFGD-VESSRKVLAHVDASSIVPINALITGL 602

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG-LNFD 367
            Q+    EA++LF ++  +  +P++ T  +ILS CTR      G  VHCY +K+  LN D
Sbjct: 603 VQNNREDEAIELFQQVLKDGFKPSNFTFTSILSGCTRPVSSVIGKQVHCYTLKSAILNQD 662

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAA-RDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
            S+G +L+ +Y KC  +  ++++  E+   ++ V WT  ISGY  +GY  ++L +F  M+
Sbjct: 663 TSLGISLVGIYLKCKLLEDANKLLEEVPDHKNLVEWTATISGYAQNGYSVQSLVMFWRMR 722

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
              V  D  T  ++L AC+    + + + +   ++K   ++      A  +D+  K G +
Sbjct: 723 SYDVRSDEATFTSVLKACSEMAALTDGKEIHGLIVKSGFVSYETATSA-LMDMYSKCGDV 781

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE--PENAANYTLLSM 544
             + ++   +  + +    +S++     +G    A +L  ++ E++  P++     +L +
Sbjct: 782 ISSFEIFKELKNRQNIMPWNSMIVGFAKNGYANEALLLFQKMQESQIKPDDVTLLGVL-I 840

Query: 545 VCSESG 550
            CS +G
Sbjct: 841 ACSHAG 846



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 130/520 (25%), Positives = 242/520 (46%), Gaps = 56/520 (10%)

Query: 33  VIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYR 92
           V+ AC+     +H G Q+HC  LKSG  +       L+ MYAK  + + A ++FD +   
Sbjct: 163 VLSACSRLGALEH-GRQVHCDVLKSGFCSSVFCQAGLVDMYAKCGEVDDARRMFDGIACP 221

Query: 93  DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIH 152
           DTI W S+I  + + G Y ++L +F  M   G V        IIS  + +G L   R + 
Sbjct: 222 DTICWTSMIAGYHRVGRYQQALALFSRMEKMGSVPDQVTCVTIISTLASMGRLGDARTL- 280

Query: 153 ALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNY 212
                                               +++ + + V+W A+I+    S   
Sbjct: 281 -----------------------------------LKRIRMTSTVAWNAVIASYSQSGLD 305

Query: 213 DTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAAL 272
                L++ M+++G+ PTR T   +L A A +     G+ IH  A   G D +  + ++L
Sbjct: 306 SEVFGLYKDMKKQGLMPTRSTFASILSAAANMTAFDEGRQIHATAVKHGLDANVFVGSSL 365

Query: 273 MHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPN 332
           +++Y +    +  A+ +F+ +  K++V+W++I+ G+ Q+    E +++F  MR   +E +
Sbjct: 366 INLYVK-HGCISDAKKVFDFSTEKNIVMWNAILYGFVQNELQEETIQMFQYMRRADLEAD 424

Query: 333 SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFN 392
             T +++L +C     L  G  VHC  +K G++ D+ + NA+++MYSK G+I  +  +F+
Sbjct: 425 DFTFVSVLGACINLYSLDLGRQVHCITIKNGMDADLFVANAMLDMYSKLGAIDVAKALFS 484

Query: 393 EMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKE 452
            +  +D VSW  LI G   +    EA+ +   M+  G+  D ++    ++AC++   ++ 
Sbjct: 485 LIPVKDSVSWNALIVGLAHNEEEGEAINMLKRMKFYGIALDEVSFATAINACSNIWAIET 544

Query: 453 AETLFN-----NVMKEKKIALAIEHYACYVDLLGKSGKIEDACKV---VSTMPMKPSTRI 504
            + + +     NV     +  ++      +DL  K G +E + KV   V    + P   +
Sbjct: 545 GKQIHSASIKYNVCSNHAVGSSL------IDLYSKFGDVESSRKVLAHVDASSIVPINAL 598

Query: 505 LSSLVSACRIHGRLEVAEMLAHQLIEA-EPENAANYTLLS 543
           ++ LV   R     E  E+    L +  +P N    ++LS
Sbjct: 599 ITGLVQNNR---EDEAIELFQQVLKDGFKPSNFTFTSILS 635



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 118/447 (26%), Positives = 220/447 (49%), Gaps = 12/447 (2%)

Query: 56  KSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLE 115
           K GS  D V   ++IS  A   +   A  L   +    T++WN++I  ++Q+G       
Sbjct: 251 KMGSVPDQVTCVTIISTLASMGRLGDARTLLKRIRMTSTVAWNAVIASYSQSGLDSEVFG 310

Query: 116 MFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLY 175
           ++++M   G +      A I+S  + +   + GRQIHA  +  G  + +VFV ++L++LY
Sbjct: 311 LYKDMKKQGLMPTRSTFASILSAAANMTAFDEGRQIHATAVKHG-LDANVFVGSSLINLY 369

Query: 176 SKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLT 235
            K      A +VF+    +N V W A++ G + ++  +  I +F+ M+R  ++    T  
Sbjct: 370 VKHGCISDAKKVFDFSTEKNIVMWNAILYGFVQNELQEETIQMFQYMRRADLEADDFTFV 429

Query: 236 IVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV 295
            VL AC  L  L  G+ +H      G D D  ++ A++ MY +   A+  A+ +F    V
Sbjct: 430 SVLGACINLYSLDLGRQVHCITIKNGMDADLFVANAMLDMYSKLG-AIDVAKALFSLIPV 488

Query: 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV 355
           KD V W+++I G + + +  EA+ +  RM+   I  + V+    +++C+    +  G  +
Sbjct: 489 KDSVSWNALIVGLAHNEEEGEAINMLKRMKFYGIALDEVSFATAINACSNIWAIETGKQI 548

Query: 356 HCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYG 415
           H   +K  +  + ++G++L+++YSK G + SS ++   + A   V    LI+G   +   
Sbjct: 549 HSASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVLAHVDASSIVPINALITGLVQNNRE 608

Query: 416 EEALQLFLEMQESGVEPDAITVLAILSACNHA-----GLVKEAETLFNNVMKEKKIALAI 470
           +EA++LF ++ + G +P   T  +ILS C        G      TL + ++ +   +L I
Sbjct: 609 DEAIELFQQVLKDGFKPSNFTFTSILSGCTRPVSSVIGKQVHCYTLKSAILNQ-DTSLGI 667

Query: 471 EHYACYVDLLGKSGKIEDACKVVSTMP 497
                Y+    K   +EDA K++  +P
Sbjct: 668 SLVGIYL----KCKLLEDANKLLEEVP 690



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 129/504 (25%), Positives = 234/504 (46%), Gaps = 65/504 (12%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYA---------QTHQHFGLQ-LHCTALKSGSDADPVIS 66
           ELHP+  Y  T +L S+ + C +A         +THQ      LH   L+ G      + 
Sbjct: 34  ELHPTTYY--TTLLASLSRECRHAHHPFDAGLHRTHQARACGVLHARILRLGLPLRGRLG 91

Query: 67  NSLISMYAKFSKPESAYQLF---DEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC 123
           ++L+ +Y +  +   A++        P     + +S+++C  ++G     L+ F+ +   
Sbjct: 92  DALVDLYGRSGRVGYAWRALACCTGAPASSAAA-SSVLSCHARSGSPRDVLDAFQRIRCS 150

Query: 124 -GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL 182
            G       +A ++S CS++G LE GRQ+H  V+  G F  SVF    L+D+Y+KC    
Sbjct: 151 IGSTPDQFGIAVVLSACSRLGALEHGRQVHCDVLKSG-FCSSVFCQAGLVDMYAKCGEVD 209

Query: 183 IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
            A R+F+ +   + + WT+MI+G      Y   + LF  M++ G  P +VT   ++   A
Sbjct: 210 DARRMFDGIACPDTICWTSMIAGYHRVGRYQQALALFSRMEKMGSVPDQVTCVTIISTLA 269

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
            +  L +                                    AR + +R ++   V W+
Sbjct: 270 SMGRLGD------------------------------------ARTLLKRIRMTSTVAWN 293

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
           ++I  YSQSG  SE   L+  M+ + + P   T  +ILS+    +    G  +H   +K 
Sbjct: 294 AVIASYSQSGLDSEVFGLYKDMKKQGLMPTRSTFASILSAAANMTAFDEGRQIHATAVKH 353

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
           GL+ +V +G++L+N+Y K G I+ + ++F+    ++ V W  ++ G+  +   EE +Q+F
Sbjct: 354 GLDANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAILYGFVQNELQEETIQMF 413

Query: 423 LEMQESGVEPDAITVLAILSACNH-----AGLVKEAETLFNNVMKEKKIALAIEHYACYV 477
             M+ + +E D  T +++L AC +      G      T+ N +  +  +A A+      +
Sbjct: 414 QYMRRADLEADDFTFVSVLGACINLYSLDLGRQVHCITIKNGMDADLFVANAM------L 467

Query: 478 DLLGKSGKIEDACKVVSTMPMKPS 501
           D+  K G I+ A  + S +P+K S
Sbjct: 468 DMYSKLGAIDVAKALFSLIPVKDS 491


>gi|356509996|ref|XP_003523727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Glycine max]
          Length = 586

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 168/454 (37%), Positives = 274/454 (60%), Gaps = 7/454 (1%)

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
           ++ LL  I++ CS+   L+ G+Q+H +V   G F++   V  +++D+YSKC     A RV
Sbjct: 3   ESRLLNKILNKCSKRRLLDQGKQVHGVVEKLG-FDVIXVVGNSMIDMYSKCGMVGEAARV 61

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F  + +RN +SW AMI+G  + +N +  ++LFR M+ +G  P   T +  L AC+     
Sbjct: 62  FNTLPVRNVISWNAMIAGYTNERNGEEALNLFREMREKGEVPDGYTYSSSLKACSCADAA 121

Query: 248 RNGKAIHGYAYCCGFDF--DHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
             G  IH      GF +     ++ AL+ +Y +C   +  AR +F+R + K V+ WS++I
Sbjct: 122 GEGMQIHAALIRHGFPYLAQSAVAGALVDLYVKCRR-MAEARKVFDRIEEKSVMSWSTLI 180

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA--G 363
            GY+Q  +L EAM LF  +R  R   +   L +I+      + L  G  +H Y +K   G
Sbjct: 181 LGYAQEDNLKEAMDLFRELRESRHRMDGFVLSSIIGVFADFALLEQGKQMHAYTIKVPYG 240

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
           L  ++S+ N++++MY KCG    +  +F EM  R+ VSWT +I+GYG HG G +A++LF 
Sbjct: 241 L-LEMSVANSVLDMYMKCGLTVEADALFREMLERNVVSWTVMITGYGKHGIGNKAVELFN 299

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS 483
           EMQE+G+EPD++T LA+LSAC+H+GL+KE +  F+ +   +KI   +EHYAC VDLLG+ 
Sbjct: 300 EMQENGIEPDSVTYLAVLSACSHSGLIKEGKKYFSILCSNQKIKPKVEHYACMVDLLGRG 359

Query: 484 GKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLS 543
           G++++A  ++  MP+KP+  I  +L+S CR+HG +E+ + +   L+  E  N ANY ++S
Sbjct: 360 GRLKEAKNLIEKMPLKPNVGIWQTLLSVCRMHGDVEMGKQVGEILLRREGNNPANYVMVS 419

Query: 544 MVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            + + +G W  +E++   ++ KGL K  G S +E
Sbjct: 420 NMYAHAGYWKESEKIRETLKRKGLKKEAGRSWVE 453



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 120/439 (27%), Positives = 213/439 (48%), Gaps = 13/439 (2%)

Query: 25  SNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQ 84
           S + +L  ++  C+  +     G Q+H    K G D   V+ NS+I MY+K      A +
Sbjct: 2   SESRLLNKILNKCSKRRLLDQ-GKQVHGVVEKLGFDVIXVVGNSMIDMYSKCGMVGEAAR 60

Query: 85  LFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGE 144
           +F+ +P R+ ISWN++I  +T       +L +FREM   G V      +  +  CS    
Sbjct: 61  VFNTLPVRNVISWNAMIAGYTNERNGEEALNLFREMREKGEVPDGYTYSSSLKACSCADA 120

Query: 145 LELGRQIHALVIVDG-SFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMI 203
              G QIHA +I  G  +     V+ AL+DLY KC     A +VF+++  ++ +SW+ +I
Sbjct: 121 AGEGMQIHAALIRHGFPYLAQSAVAGALVDLYVKCRRMAEARKVFDRIEEKSVMSWSTLI 180

Query: 204 SGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFD 263
            G     N    +DLFR ++    +     L+ ++   A+   L  GK +H Y     + 
Sbjct: 181 LGYAQEDNLKEAMDLFRELRESRHRMDGFVLSSIIGVFADFALLEQGKQMHAYTIKVPYG 240

Query: 264 -FDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFS 322
             +  ++ +++ MY +C   +  A  +F     ++VV W+ +I GY + G  ++A++LF+
Sbjct: 241 LLEMSVANSVLDMYMKCGLTVE-ADALFREMLERNVVSWTVMITGYGKHGIGNKAVELFN 299

Query: 323 RMRLERIEPNSVTLLAILSSCTRQSFLSHG---LGVHCYIMKAGLNFDVSIGNALMNMYS 379
            M+   IEP+SVT LA+LS+C+    +  G     + C   K  +   V     ++++  
Sbjct: 300 EMQENGIEPDSVTYLAVLSACSHSGLIKEGKKYFSILCSNQK--IKPKVEHYACMVDLLG 357

Query: 380 KCGSITSSHQIFNEMAARDFVS-WTTLISGYGFHGYGEEALQLF-LEMQESGVEPDAITV 437
           + G +  +  +  +M  +  V  W TL+S    HG  E   Q+  + ++  G  P    +
Sbjct: 358 RGGRLKEAKNLIEKMPLKPNVGIWQTLLSVCRMHGDVEMGKQVGEILLRREGNNPANYVM 417

Query: 438 LAILSACNHAGLVKEAETL 456
           ++ + A  HAG  KE+E +
Sbjct: 418 VSNMYA--HAGYWKESEKI 434



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 108/436 (24%), Positives = 191/436 (43%), Gaps = 55/436 (12%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD--ADPVI 65
           E+ L+L++ E+   G   +     S +KAC+ A      G+Q+H   ++ G    A   +
Sbjct: 87  EEALNLFR-EMREKGEVPDGYTYSSSLKACSCADAAGE-GMQIHAALIRHGFPYLAQSAV 144

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
           + +L+ +Y K  +   A ++FD +  +  +SW+++I  + Q      ++++FRE+     
Sbjct: 145 AGALVDLYVKCRRMAEARKVFDRIEEKSVMSWSTLILGYAQEDNLKEAMDLFRELRESRH 204

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
            +   +L+ II + +    LE G+Q+HA  I      L + V+ ++LD+Y KC   + A 
Sbjct: 205 RMDGFVLSSIIGVFADFALLEQGKQMHAYTIKVPYGLLEMSVANSVLDMYMKCGLTVEAD 264

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
            +F +M+ RN VSWT MI+G       +  ++LF  MQ  G++P  VT   VL AC+   
Sbjct: 265 ALFREMLERNVVSWTVMITGYGKHGIGNKAVELFNEMQENGIEPDSVTYLAVLSACSHSG 324

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
            ++ GK    ++  C    +  +   + H  C                          ++
Sbjct: 325 LIKEGKKY--FSILCS---NQKIKPKVEHYAC--------------------------MV 353

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
               + G L EA  L  +M L   +PN      +LS C     +  G  V   +++   N
Sbjct: 354 DLLGRGGRLKEAKNLIEKMPL---KPNVGIWQTLLSVCRMHGDVEMGKQVGEILLRREGN 410

Query: 366 FDVSIGNALM--NMYSKCGSITSSHQI--------FNEMAARDFVSWTTLI----SGYGF 411
              +  N +M  NMY+  G    S +I          + A R +V     I    +G G 
Sbjct: 411 ---NPANYVMVSNMYAHAGYWKESEKIRETLKRKGLKKEAGRSWVEMDKEIHIFYNGDGM 467

Query: 412 HGYGEEALQLFLEMQE 427
           H   EE  ++  EM++
Sbjct: 468 HPLIEEIHEVLKEMEK 483


>gi|357441891|ref|XP_003591223.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480271|gb|AES61474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 606

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 173/514 (33%), Positives = 291/514 (56%), Gaps = 3/514 (0%)

Query: 65  ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG 124
           ++  LI  Y      E A+ LFDEMP+RD I+W S+I  +T    + R+  +F  M   G
Sbjct: 43  LTTDLIKSYFDKGSFEEAHTLFDEMPHRDVIAWTSMITGYTSCNHHSRAWNVFTNMLRDG 102

Query: 125 FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
               A  ++ ++  C  +  L  G+ +H L I  G+   S++V  AL+D+Y+ C   +  
Sbjct: 103 VKPNAFTVSAVLKACKSLKALLCGKLVHGLAIKIGTQGSSIYVDNALMDMYATCCDSMDN 162

Query: 185 LR-VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
            R VFE +  +N VSWT +I+G    ++   G+ +FR M  E  + +  + +I + ACA 
Sbjct: 163 ARLVFEDIGTKNAVSWTTLITGYTHRRDAFGGLRVFRQMFMEEGELSPFSFSIAVSACAS 222

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
           +     GK +H      GF+ +  +  A++ MYC C  A    ++  E T+ KD + W++
Sbjct: 223 IGSSNLGKQVHAAVINHGFESNLPVMNAILDMYCRCRCASEAKQLFGEMTQ-KDTITWNT 281

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           +I G+ ++ D  E++ +FS+M  E   PN  T  +++++C   + L  G  +H  I+  G
Sbjct: 282 LIAGF-ETLDSYESLCIFSQMVSEGFSPNCFTFTSVIAACANLAILYCGQQLHGGIIHRG 340

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
           L+ ++ + NAL++MY+KCG++  SH+IF+ M   + VSWT+++ GYG HG+G+EA+ LF 
Sbjct: 341 LDNNLELSNALIDMYAKCGNVADSHKIFSGMRHTNLVSWTSMMIGYGAHGHGKEAVDLFN 400

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS 483
           EM  SG++PD I  +A+LSAC+HAGLV E    F  +     +A   + YAC VDLL ++
Sbjct: 401 EMVGSGIKPDKIVFMAVLSACSHAGLVDEGLRYFRLMTSYYNVAPDRDIYACVVDLLSRA 460

Query: 484 GKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLS 543
           G++++A +++  MP KP   I  +L+ AC+ + +  + ++ A +++E +P  A  Y LLS
Sbjct: 461 GRVKEAYELIENMPFKPDESIWVALLGACKKYKQPSIQKLAALKVLEMKPNKAGTYVLLS 520

Query: 544 MVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
              +  GNW     + ++MR+    K  G S IE
Sbjct: 521 NFSAAEGNWADFASLRKLMRSTKSKKEVGRSWIE 554



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 145/316 (45%), Gaps = 45/316 (14%)

Query: 34  IKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRD 93
           + ACA   +  + G Q+H   +  G +++  + N+++ MY +      A QLF EM  +D
Sbjct: 217 VSACASIGS-SNLGKQVHAAVINHGFESNLPVMNAILDMYCRCRCASEAKQLFGEMTQKD 275

Query: 94  TISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHA 153
           TI+WN++I  F     Y  SL +F +M   GF         +I+ C+ +  L  G+Q+H 
Sbjct: 276 TITWNTLIAGFETLDSY-ESLCIFSQMVSEGFSPNCFTFTSVIAACANLAILYCGQQLHG 334

Query: 154 LVI---VDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQ 210
            +I   +D + EL    S AL+D+Y+KC +   + ++F  M   N VSWT+M+ G     
Sbjct: 335 GIIHRGLDNNLEL----SNALIDMYAKCGNVADSHKIFSGMRHTNLVSWTSMMIGYGAHG 390

Query: 211 NYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSA 270
           +    +DLF  M   G+KP ++    VL AC+                           A
Sbjct: 391 HGKEAVDLFNEMVGSGIKPDKIVFMAVLSACSH--------------------------A 424

Query: 271 ALMHMYCECTEALHPARIIFERTKV-KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
            L+       E L   R++     V  D  I++ ++   S++G + EA +L   M     
Sbjct: 425 GLVD------EGLRYFRLMTSYYNVAPDRDIYACVVDLLSRAGRVKEAYELIENMPF--- 475

Query: 330 EPNSVTLLAILSSCTR 345
           +P+    +A+L +C +
Sbjct: 476 KPDESIWVALLGACKK 491



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 97/218 (44%), Gaps = 4/218 (1%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G   N     SVI ACA      + G QLH   +  G D +  +SN+LI MYAK      
Sbjct: 305 GFSPNCFTFTSVIAACANLAI-LYCGQQLHGGIIHRGLDNNLELSNALIDMYAKCGNVAD 363

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           ++++F  M + + +SW S++  +  +G    ++++F EM   G      +   ++S CS 
Sbjct: 364 SHKIFSGMRHTNLVSWTSMMIGYGAHGHGKEAVDLFNEMVGSGIKPDKIVFMAVLSACSH 423

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR-NEVSWT 200
            G ++ G +   L+    +      +   ++DL S+      A  + E M  + +E  W 
Sbjct: 424 AGLVDEGLRYFRLMTSYYNVAPDRDIYACVVDLLSRAGRVKEAYELIENMPFKPDESIWV 483

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVL 238
           A++  C   +     I    A++   +KP +    ++L
Sbjct: 484 ALLGAC--KKYKQPSIQKLAALKVLEMKPNKAGTYVLL 519


>gi|224141409|ref|XP_002324065.1| predicted protein [Populus trichocarpa]
 gi|222867067|gb|EEF04198.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 170/512 (33%), Positives = 298/512 (58%), Gaps = 3/512 (0%)

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           NSLI+ YAK ++   A+ LFD MP R+ +SW++++  +  NGF ++ + + ++M   G V
Sbjct: 70  NSLINFYAKVNQVSIAHNLFDRMPERNVVSWSALMTGYLLNGFSLKVIRLLKDMISEGNV 129

Query: 127 LKAE-LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
              E +LA  IS C   G +E GRQ H L++  G F    +V  AL+ +YSKC     A+
Sbjct: 130 SPNEYILAIAISSCCDRGRVEEGRQCHGLLLKTG-FSFHNYVRNALVSMYSKCSIVQDAM 188

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
            V+ ++ + + V++ +++S  +++     G+++ R+M  E VK  +VT       CA L+
Sbjct: 189 GVWNEVPVNDIVAYNSILSSLVENGYLREGLEVLRSMVSESVKWDKVTFVNAFSLCASLK 248

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
           DLR G  +HG       + D ++S+A+++MY +C ++L  AR +F+  + ++VV+W++++
Sbjct: 249 DLRLGLHVHGKMLTSDVECDAYVSSAIINMYGKCGKSLM-ARGVFDGLQSRNVVLWTAVM 307

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
               Q+G   EA+ LFS+M  E ++ N  T   +L++C   S   +G  +H +  K+G  
Sbjct: 308 ASCFQNGCFEEALNLFSKMEQENVKSNEFTYAVLLNACAGLSARRNGSLLHGHSEKSGFK 367

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
             V +GNAL+NMY+K G I ++ ++F++M  RD ++W  +I G+  HG G++AL +F +M
Sbjct: 368 HHVMVGNALINMYAKSGDIEAAKKVFSDMMHRDIITWNAMICGFSHHGLGKKALLVFQDM 427

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
             +   P+ +T   +LSAC H GLV+E     +++MK+  +   +EHY C V LL K+G+
Sbjct: 428 LAAEEHPNYVTFTGVLSACGHLGLVQEGFYYLHHLMKQFGVQPGLEHYTCIVSLLSKTGQ 487

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV 545
           + +A   + T P+K       +L++AC +H    +   +A  ++E +P +   YTLLS +
Sbjct: 488 LNEARNFMRTAPVKWDVVAWRTLLNACHVHQNYGLGRWVAEFVLEMDPNDVGTYTLLSNI 547

Query: 546 CSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            ++   W G  +V ++MR K + K  G S IE
Sbjct: 548 YAKEKRWDGVVKVRKLMRDKKIKKEPGVSWIE 579



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 127/469 (27%), Positives = 223/469 (47%), Gaps = 19/469 (4%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           F  + + L K  +    +  N  IL   I +C   +     G Q H   LK+G      +
Sbjct: 112 FSLKVIRLLKDMISEGNVSPNEYILAIAISSCC-DRGRVEEGRQCHGLLLKTGFSFHNYV 170

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
            N+L+SMY+K S  + A  +++E+P  D +++NSI++   +NG+    LE+ R M     
Sbjct: 171 RNALVSMYSKCSIVQDAMGVWNEVPVNDIVAYNSILSSLVENGYLREGLEVLRSMVSESV 230

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
                      SLC+ + +L LG  +H  ++     E   +VS+A++++Y KC   L+A 
Sbjct: 231 KWDKVTFVNAFSLCASLKDLRLGLHVHGKMLT-SDVECDAYVSSAIINMYGKCGKSLMAR 289

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
            VF+ +  RN V WTA+++ C  +  ++  ++LF  M++E VK    T  ++L ACA L 
Sbjct: 290 GVFDGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKMEQENVKSNEFTYAVLLNACAGLS 349

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
             RNG  +HG++   GF     +  AL++MY +  + +  A+ +F     +D++ W+++I
Sbjct: 350 ARRNGSLLHGHSEKSGFKHHVMVGNALINMYAKSGD-IEAAKKVFSDMMHRDIITWNAMI 408

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
            G+S  G   +A+ +F  M      PN VT   +LS+C     +  G     ++MK    
Sbjct: 409 CGFSHHGLGKKALLVFQDMLAAEEHPNYVTFTGVLSACGHLGLVQEGFYYLHHLMK---Q 465

Query: 366 FDVSIG----NALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFH---GYGEE 417
           F V  G      ++++ SK G +  +         + D V+W TL++    H   G G  
Sbjct: 466 FGVQPGLEHYTCIVSLLSKTGQLNEARNFMRTAPVKWDVVAWRTLLNACHVHQNYGLGRW 525

Query: 418 ALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
             +  LEM     +P+ +    +LS         +       +M++KKI
Sbjct: 526 VAEFVLEM-----DPNDVGTYTLLSNIYAKEKRWDGVVKVRKLMRDKKI 569



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 117/426 (27%), Positives = 212/426 (49%), Gaps = 15/426 (3%)

Query: 132 LAGIISLCSQIGELELGRQIHA-LVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQ 190
           L  ++ L +    L++G+ IH+ L++   + E S+    +L++ Y+K +   IA  +F++
Sbjct: 32  LIKLLKLSADTKNLKVGKTIHSHLIVTSRATENSIIEVNSLINFYAKVNQVSIAHNLFDR 91

Query: 191 MVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG-VKPTRVTLTIVLLACAELRDLRN 249
           M  RN VSW+A+++G + +      I L + M  EG V P    L I + +C +   +  
Sbjct: 92  MPERNVVSWSALMTGYLLNGFSLKVIRLLKDMISEGNVSPNEYILAIAISSCCDRGRVEE 151

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
           G+  HG     GF F +++  AL+ MY +C+  +  A  ++    V D+V ++SI+    
Sbjct: 152 GRQCHGLLLKTGFSFHNYVRNALVSMYSKCS-IVQDAMGVWNEVPVNDIVAYNSILSSLV 210

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
           ++G L E +++   M  E ++ + VT +   S C     L  GL VH  ++ + +  D  
Sbjct: 211 ENGYLREGLEVLRSMVSESVKWDKVTFVNAFSLCASLKDLRLGLHVHGKMLTSDVECDAY 270

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
           + +A++NMY KCG    +  +F+ + +R+ V WT +++    +G  EEAL LF +M++  
Sbjct: 271 VSSAIINMYGKCGKSLMARGVFDGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKMEQEN 330

Query: 430 VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYA----CYVDLLGKSGK 485
           V+ +  T   +L+AC  AGL         +   EK      +H+       +++  KSG 
Sbjct: 331 VKSNEFTYAVLLNAC--AGLSARRNGSLLHGHSEKS---GFKHHVMVGNALINMYAKSGD 385

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV 545
           IE A KV S M M       ++++     HG  + A ++   ++ AE     NY   + V
Sbjct: 386 IEAAKKVFSDM-MHRDIITWNAMICGFSHHGLGKKALLVFQDMLAAEEH--PNYVTFTGV 442

Query: 546 CSESGN 551
            S  G+
Sbjct: 443 LSACGH 448



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 98/206 (47%), Gaps = 12/206 (5%)

Query: 324 MRLERIEPNS-VTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSI--GNALMNMYSK 380
           +R   + P+S + L+ +L        L  G  +H +++      + SI   N+L+N Y+K
Sbjct: 19  LRPNAVSPSSPLDLIKLLKLSADTKNLKVGKTIHSHLIVTSRATENSIIEVNSLINFYAK 78

Query: 381 CGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM-QESGVEPDAITVLA 439
              ++ +H +F+ M  R+ VSW+ L++GY  +G+  + ++L  +M  E  V P+   +  
Sbjct: 79  VNQVSIAHNLFDRMPERNVVSWSALMTGYLLNGFSLKVIRLLKDMISEGNVSPNEYILAI 138

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYA--CYVDLLGKSGKIEDACKVVSTMP 497
            +S+C   G V+E       ++   K   +  +Y     V +  K   ++DA  V + +P
Sbjct: 139 AISSCCDRGRVEEGRQCHGLLL---KTGFSFHNYVRNALVSMYSKCSIVQDAMGVWNEVP 195

Query: 498 MK---PSTRILSSLVSACRIHGRLEV 520
           +        ILSSLV    +   LEV
Sbjct: 196 VNDIVAYNSILSSLVENGYLREGLEV 221


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 188/581 (32%), Positives = 325/581 (55%), Gaps = 9/581 (1%)

Query: 1   MVSKHFYE----QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALK 56
           ++S H  E    + L L+++ +   G+ SNT    + ++      +    G+ +H   LK
Sbjct: 219 IISAHVAEGNCLEALSLFRR-MQEVGVASNTYTFVAALQGVE-DPSFVKLGMGIHGAVLK 276

Query: 57  SGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEM 116
           S   AD  ++N+LI+MYAK  + E A ++F+ M  RD +SWN++++   QN  Y  +L  
Sbjct: 277 SNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNY 336

Query: 117 FREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYS 176
           FR+M   G       +  +I+   + G L  G+++HA  I +G  + ++ +   L+D+Y+
Sbjct: 337 FRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNG-LDSNMQIGNTLVDMYA 395

Query: 177 KCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTI 236
           KC         FE M  ++ +SWT +I+G   ++ +   I+LFR +Q +G+    + +  
Sbjct: 396 KCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGS 455

Query: 237 VLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK 296
           VL AC+ L+     + IHGY +      D  L  A++++Y E    +  AR  FE  + K
Sbjct: 456 VLRACSGLKSRNFIREIHGYVFKRDLA-DIMLQNAIVNVYGEVGH-IDYARRAFESIRSK 513

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVH 356
           D+V W+S+I     +G   EA++LF  ++   I+P+S+ +++ LS+    S L  G  +H
Sbjct: 514 DIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIH 573

Query: 357 CYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGE 416
            ++++ G   +  I ++L++MY+ CG++ +S ++F+ +  RD + WT++I+  G HG G 
Sbjct: 574 GFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGN 633

Query: 417 EALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACY 476
           +A+ LF +M +  V PD IT LA+L AC+H+GL+ E +  F  +    ++    EHYAC 
Sbjct: 634 KAIALFKKMTDQNVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACM 693

Query: 477 VDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENA 536
           VDLL +S  +E+A   V  MP+KPS+ I  +L+ AC IH   E+ E+ A +L++++ EN+
Sbjct: 694 VDLLSRSNSLEEAYHFVRNMPIKPSSEIWCALLGACHIHSNKELGELAAKELLQSDTENS 753

Query: 537 ANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
             Y L+S + +  G W   EEV   M+  GL K+ G S IE
Sbjct: 754 GKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIE 794



 Score =  212 bits (539), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 144/504 (28%), Positives = 253/504 (50%), Gaps = 16/504 (3%)

Query: 20  PSGL-YSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSK 78
           PS L ++++ +L   + A A  Q     G QLH   LKS   A   ++  L+ MY K   
Sbjct: 42  PSRLEHAHSLLLDLCVAAKALPQ-----GQQLHALLLKSHLSA--FLATKLVLMYGKCGS 94

Query: 79  PESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISL 138
              A ++FDEM  R   SWN+++  F  +G Y+ ++E++++M + G  + A     ++  
Sbjct: 95  LRDAVKVFDEMSERTIFSWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKA 154

Query: 139 CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE-- 196
           C  +GE  LG +IH + +  G  E  VFV  AL+ +Y KC     A  +F+ +++  E  
Sbjct: 155 CGALGESRLGAEIHGVAVKCGYGEF-VFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDT 213

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           VSW ++IS  +   N    + LFR MQ  GV     T    L    +   ++ G  IHG 
Sbjct: 214 VSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGA 273

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
                   D +++ AL+ MY +C       R +FE    +D V W++++ G  Q+   S+
Sbjct: 274 VLKSNHFADVYVANALIAMYAKCGRMEDAGR-VFESMLCRDYVSWNTLLSGLVQNELYSD 332

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
           A+  F  M+    +P+ V++L ++++  R   L  G  VH Y ++ GL+ ++ IGN L++
Sbjct: 333 ALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVD 392

Query: 377 MYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAIT 436
           MY+KC  +      F  M  +D +SWTT+I+GY  + +  EA+ LF ++Q  G++ D + 
Sbjct: 393 MYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMM 452

Query: 437 VLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
           + ++L AC+          +   V K     + +++    V++ G+ G I+ A +   ++
Sbjct: 453 IGSVLRACSGLKSRNFIREIHGYVFKRDLADIMLQN--AIVNVYGEVGHIDYARRAFESI 510

Query: 497 PMKPSTRILSSLVSACRIHGRLEV 520
             K      +S+++ C +H  L V
Sbjct: 511 RSKDIVS-WTSMITCC-VHNGLPV 532


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 189/608 (31%), Positives = 316/608 (51%), Gaps = 60/608 (9%)

Query: 15  KQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALK----SGSDADPVISNSLI 70
           K +L PS       +LP  I+     Q H H  L+ + T L+    S S  D        
Sbjct: 11  KPQLTPS-------LLPLTIQQL---QHHPHSTLKFNPTPLQTPPTSPSQHDLSTLEQTK 60

Query: 71  SMYAKFSKPESAYQLFDEMPYRD-------TISWNSIINCFTQNGFYVRSLEMFREMYLC 123
            ++A   K    + L  ++P  D       +  WN +I  +T+      +L ++ ++   
Sbjct: 61  QIHAHIIKTHFHHAL--QIPLNDFPSGLSPSAQWNFVITSYTKRNQPRNALNVYAQLRKM 118

Query: 124 GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
            F +   +   ++  C Q+   +LG++IH  V+  G  +  VFV  AL+ +Y +C     
Sbjct: 119 DFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLKKG-LDRDVFVGNALMLMYGECACVEY 177

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
           A  VF++M+ R+ VSW+ MI     ++ +D  ++L R M    V+P+ V +  ++   A+
Sbjct: 178 ARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFAD 237

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHL----SAALMHMYCEC-------------------- 279
             ++R GKA+H  AY      + H+    + AL+ MY +C                    
Sbjct: 238 TANMRMGKAMH--AYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVS 295

Query: 280 ----------TEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
                     +  L  AR +F+ T+ +DV+IW++++  Y+Q+  + +A  LF +MR   +
Sbjct: 296 WTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGV 355

Query: 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
            P  VT++++LS C     L  G  VH YI K  +  D  +  AL++MY+KCG I ++ +
Sbjct: 356 RPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGR 415

Query: 390 IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL 449
           +F E  +RD   W  +I+G+  HGYGEEAL +F EM+  GV+P+ IT + +L AC+HAGL
Sbjct: 416 LFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGL 475

Query: 450 VKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLV 509
           V E + LF  ++    +   IEHY C VDLLG++G +++A +++ +MP+KP+T +  +LV
Sbjct: 476 VTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALV 535

Query: 510 SACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSK 569
           +ACR+H   ++ E+ A QL+E EPEN     L+S + + +  W  A  V + M+  G+ K
Sbjct: 536 AACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKK 595

Query: 570 SYGFSRIE 577
             G S IE
Sbjct: 596 EPGHSVIE 603


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 193/611 (31%), Positives = 324/611 (53%), Gaps = 65/611 (10%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEM 89
           LP V+KAC    +++  G   H     +G +++  I N+L++MY++    E A  +FDE+
Sbjct: 13  LPHVLKACGELPSYR-CGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEI 71

Query: 90  PYR---DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISL------CS 140
             R   D ISWNSI++   ++     +L++F +M L          + IIS+      C 
Sbjct: 72  TQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACG 131

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
            +  +   +++H   I +G+F L VFV  AL+D Y+KC     A++VF  M  ++ VSW 
Sbjct: 132 SLKAVPQTKEVHGNAIRNGTF-LDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWN 190

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVK-------------------------------- 228
           AM++G   S N+    +LF+ M++E +                                 
Sbjct: 191 AMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFS 250

Query: 229 ---PTRVTLTIVLLACAELRDLRNGKAIHGYAY--CC--------GFDFDHHLSAALMHM 275
              P  VT+  VL ACA L     G  IH Y+   C         G D D  +  AL+ M
Sbjct: 251 GSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDM 310

Query: 276 YCECTEALHPARIIFERTKV--KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER--IEP 331
           Y +C  +   AR IF+   +  ++VV W+ +I G++Q GD ++A+KLF  M  E   + P
Sbjct: 311 YSKC-RSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAP 369

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS---IGNALMNMYSKCGSITSSH 388
           N+ T+  IL +C   + +  G  +H Y+++    +D S   + N L+NMYSKCG + ++ 
Sbjct: 370 NAYTISCILMACAHLAAIRIGKQIHAYVLRHH-QYDSSAYFVANCLINMYSKCGDVDTAR 428

Query: 389 QIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG 448
            +F+ M+ +  +SWT++++GYG HG G EAL +F +M+++G  PD IT L +L AC+H G
Sbjct: 429 HVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCG 488

Query: 449 LVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSL 508
           +V +  + F+++  +  +    EHYA  +DLL + G+++ A K V  MPM+P+  +  +L
Sbjct: 489 MVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVAL 548

Query: 509 VSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLS 568
           +SACR+H  +E+AE   ++L+E   EN  +YTL+S + + +G W     +  +M+  G+ 
Sbjct: 549 LSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIK 608

Query: 569 KSYGFSRIENE 579
           K  G S ++ +
Sbjct: 609 KRPGCSWVQGQ 619



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 139/558 (24%), Positives = 247/558 (44%), Gaps = 124/558 (22%)

Query: 6   FYEQTLHLYKQELHP-SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPV 64
           F + TL ++++  +  S + S   ILP+     A  QT +     +H  A+++G+  D  
Sbjct: 102 FSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKE-----VHGNAIRNGTFLDVF 156

Query: 65  ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEM-------- 116
           + N+LI  YAK    E+A ++F+ M ++D +SWN+++  ++Q+G +  + E+        
Sbjct: 157 VGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKEN 216

Query: 117 ---------------------------FREMYLCGFVLKAELLAGIISLCSQIGELELGR 149
                                      FR+M   G +     +  ++S C+ +G    G 
Sbjct: 217 IPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGM 276

Query: 150 QIHA------LVIVDGSF---ELSVFVSTALLDLYSKCHHWLIALRVFEQMVI--RNEVS 198
           +IHA      L+ +D  F   +  + V  AL+D+YSKC  +  A  +F+ + +  RN V+
Sbjct: 277 EIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVT 336

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQRE--GVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           WT MI G     + +  + LF  M  E  GV P   T++ +L+ACA L  +R GK IH Y
Sbjct: 337 WTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAY 396

Query: 257 AYCCGFDFDHH--------LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
                    HH        ++  L++MY +C + +  AR +F+    K  + W+S++ GY
Sbjct: 397 V------LRHHQYDSSAYFVANCLINMYSKCGD-VDTARHVFDSMSQKSAISWTSMMTGY 449

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
              G  SEA+ +F +MR     P+ +T L +L +C+           HC ++  GL++  
Sbjct: 450 GMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACS-----------HCGMVDQGLSY-- 496

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
                                 F+ M+A D+     L      + Y  + L  F  + ++
Sbjct: 497 ----------------------FDSMSA-DY----GLTPRAEHYAYAIDLLARFGRLDKA 529

Query: 429 -------GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYV---D 478
                   +EP A+  +A+LSAC     V+ AE   N     K + +  E+   Y    +
Sbjct: 530 WKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALN-----KLVEMNAENDGSYTLISN 584

Query: 479 LLGKSGKIEDACKVVSTM 496
           +   +G+ +D  ++   M
Sbjct: 585 IYATAGRWKDVARIRHLM 602



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 131/249 (52%), Gaps = 10/249 (4%)

Query: 222 MQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTE 281
           M R G +    TL  VL AC EL   R G A HG   C GF+ +  +  AL+ MY  C  
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCG- 59

Query: 282 ALHPARIIFE---RTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNS----- 333
           +L  A +IF+   +  + DV+ W+SI+  + +S +   A+ LFS+M L   E  +     
Sbjct: 60  SLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSD 119

Query: 334 -VTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFN 392
            ++++ IL +C     +     VH   ++ G   DV +GNAL++ Y+KCG + ++ ++FN
Sbjct: 120 IISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFN 179

Query: 393 EMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKE 452
            M  +D VSW  +++GY   G  + A +LF  M++  +  D +T  A+++  +  G   E
Sbjct: 180 MMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHE 239

Query: 453 AETLFNNVM 461
           A  +F  ++
Sbjct: 240 ALNVFRQMI 248



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 135/567 (23%), Positives = 242/567 (42%), Gaps = 83/567 (14%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKS----------G 58
           + L++++Q +  SG   N   + SV+ ACA        G+++H  +LK+          G
Sbjct: 239 EALNVFRQMIF-SGSLPNCVTIISVLSACASLGAFSQ-GMEIHAYSLKNCLLTLDNDFGG 296

Query: 59  SDADPVISNSLISMYAKFSKPESAYQLFDEMPY--RDTISWNSIINCFTQNGFYVRSLEM 116
            D D ++ N+LI MY+K    ++A  +FD++P   R+ ++W  +I    Q G    +L++
Sbjct: 297 EDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKL 356

Query: 117 FREMY--LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSV-FVSTALLD 173
           F EM     G    A  ++ I+  C+ +  + +G+QIHA V+    ++ S  FV+  L++
Sbjct: 357 FVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLIN 416

Query: 174 LYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVT 233
           +YSKC     A  VF+ M  ++ +SWT+M++G          +D+F  M++ G  P  +T
Sbjct: 417 MYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDIT 476

Query: 234 LTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERT 293
             +VL AC+       G    G +Y      D+ L+    H                   
Sbjct: 477 FLVVLYACSHC-----GMVDQGLSYFDSMSADYGLTPRAEH------------------- 512

Query: 294 KVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGL 353
                  ++  I   ++ G L +A K    M +   EP +V  +A+LS+C   S +   L
Sbjct: 513 -------YAYAIDLLARFGRLDKAWKTVKDMPM---EPTAVVWVALLSACRVHSNVE--L 560

Query: 354 GVHCYIMKAGLNFDVSIGNALM-NMYSKCGSITSSHQIFNEM-----AARDFVSWTTLIS 407
             H       +N +      L+ N+Y+  G      +I + M       R   SW     
Sbjct: 561 AEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQK 620

Query: 408 GYGFHGYGEEALQLFLEMQESGVEPDAITVL-AILSACNHAGLVKEAETLFNNVMKEKKI 466
           G             F+  +   + P    +L +++      G V E     ++V +E+K 
Sbjct: 621 G---------TASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKN 671

Query: 467 ALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLE-VAEMLA 525
            L +EH          S K+  A  +++T P  P  RI  +L      H     +++++ 
Sbjct: 672 NLLVEH----------SEKLALAYGLLTTFPGCP-IRITKNLRVCGDCHSAFTYISKIVD 720

Query: 526 HQLIEAEPENAANYTLLSMVCSESGNW 552
           H+++  +P    ++   S  CS  G W
Sbjct: 721 HEIVVRDPSRFHHFKNGS--CSCGGYW 745


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 178/552 (32%), Positives = 312/552 (56%), Gaps = 4/552 (0%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           ++  + SV +AC+   + +  G  +H   ++   +++  ++NSLI MY K     SA +L
Sbjct: 200 DSVTMLSVTEACSELGSLR-LGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERL 258

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL 145
           F+ +P R T  W  +I+C+ Q+G +  +L +F +M           + G++  C+++G +
Sbjct: 259 FENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRV 318

Query: 146 ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISG 205
           + GR +H  VI         F+  AL++LY+   +     +VFE +  +  +SW  +IS 
Sbjct: 319 KEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISI 378

Query: 206 CIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFD 265
              +   +  + LF  MQ +G+ P   +L   L AC  +   + G  IHGY    G +F+
Sbjct: 379 FTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTG-NFN 437

Query: 266 HHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR 325
             +  AL+ MY +C   +H A  +FE+ K K +V W+S+I G+SQ+G   EA+ LF +M 
Sbjct: 438 DFVQNALIDMYAKCG-FVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMY 496

Query: 326 LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSIT 385
           +  ++ + +T L+++ +C+   +L  G  VH  ++  GL  D  +  AL +MYSKCG + 
Sbjct: 497 MNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQ 556

Query: 386 SSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
            +H +F+ M+ R  VSW+ +I+GYG HG     + LF +M  SG++P+ IT + ILSAC+
Sbjct: 557 MAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACS 616

Query: 446 HAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRIL 505
           HAG V+E +  FN+ M E  +    +H+AC VDLL ++G +  A ++++++P   ++ I 
Sbjct: 617 HAGAVEEGKLYFNS-MSEFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIW 675

Query: 506 SSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAK 565
            +L++ CRIH R+++ + +   L++ +  +   YTLLS + +E G W    +V  +M++K
Sbjct: 676 GALLNGCRIHKRIDIIKSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSK 735

Query: 566 GLSKSYGFSRIE 577
           GL K  G+S IE
Sbjct: 736 GLRKVPGYSTIE 747



 Score =  254 bits (650), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 164/550 (29%), Positives = 297/550 (54%), Gaps = 14/550 (2%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           F+E+ + LY + ++      +  + PSV+KAC+        G ++H   +K G ++D V+
Sbjct: 79  FFEEAVSLYHEMVYQDQTQISNFVFPSVLKACS-GFGDLSVGGKVHGRVIKCGFESDAVV 137

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
             SL+ MY + S  + A + FD MP RD ++W+SI+  F QNG     L+MF +M     
Sbjct: 138 ETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAV 197

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
              +  +  +   CS++G L LGR +H  V V    E +  ++ +L+ +Y K      A 
Sbjct: 198 EPDSVTMLSVTEACSELGSLRLGRSVHGYV-VRREIESNASLNNSLIVMYGKLGDLYSAE 256

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
           R+FE +  R    WT MIS    S  +   +++F  MQ   ++P +VT+  VL ACA L 
Sbjct: 257 RLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLG 316

Query: 246 DLRNGKAIHGYAYCCGFDFD-HHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
            ++ G+++HG+      D +   L  ALM +Y + T  L     +FE  K K ++ W+++
Sbjct: 317 RVKEGRSVHGFVIRRAMDPELDFLGPALMELYAD-TGNLRDCHKVFETIKEKTILSWNTL 375

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
           I  ++++G   EA+ LF +M+ + + P+S +L + LS+C   SF   G  +H YI+K G 
Sbjct: 376 ISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTG- 434

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
           NF+  + NAL++MY+KCG + S++++F ++  +  V+W ++I G+  +GY  EA+ LF +
Sbjct: 435 NFNDFVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQ 494

Query: 425 MQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGK 482
           M  + V+ D +T L+++ AC+H G +++ + + + ++      L  + Y      D+  K
Sbjct: 495 MYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLI---MYGLRKDSYLDTALTDMYSK 551

Query: 483 SGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYT 540
            G+++ A  V   M  + S    S +++   +HG++     L +Q++ +  +P +     
Sbjct: 552 CGELQMAHGVFDRMSER-SIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMH 610

Query: 541 LLSMVCSESG 550
           +LS  CS +G
Sbjct: 611 ILS-ACSHAG 619



 Score =  224 bits (571), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 133/453 (29%), Positives = 239/453 (52%), Gaps = 6/453 (1%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           QLH     +G    P  S  LI  YA+    ES+ ++FD  P  D+  W  +I C+   G
Sbjct: 19  QLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGG 78

Query: 109 FYVRSLEMFREM-YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFV 167
           F+  ++ ++ EM Y     +   +   ++  CS  G+L +G ++H  VI  G FE    V
Sbjct: 79  FFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKCG-FESDAVV 137

Query: 168 STALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV 227
            T+LL +Y +      A + F+ M IR+ V+W++++   + +     G+D+F  M  E V
Sbjct: 138 ETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAV 197

Query: 228 KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPAR 287
           +P  VT+  V  AC+EL  LR G+++HGY      + +  L+ +L+ MY +  + L+ A 
Sbjct: 198 EPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGD-LYSAE 256

Query: 288 IIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQS 347
            +FE    +    W+ +I  Y+QSG   EA+ +F++M+  ++EPN VT++ +L +C R  
Sbjct: 257 RLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLG 316

Query: 348 FLSHGLGVHCYIMKAGLNFDVS-IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
            +  G  VH ++++  ++ ++  +G ALM +Y+  G++   H++F  +  +  +SW TLI
Sbjct: 317 RVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLI 376

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
           S +  +G  EEAL LF++MQ  G+ PD+ ++ + LSAC      +    +   ++K    
Sbjct: 377 SIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNF 436

Query: 467 ALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
              +++    +D+  K G +  A K+   +  K
Sbjct: 437 NDFVQN--ALIDMYAKCGFVHSANKMFEKIKEK 467



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 113/382 (29%), Positives = 195/382 (51%), Gaps = 8/382 (2%)

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
           Q+HA + + G        ST L++ Y++   +  + RVF+     +   W  +I   +  
Sbjct: 19  QLHAHLFITG-LHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWG 77

Query: 210 QNYDTGIDLFRAM-QREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHL 268
             ++  + L+  M  ++  + +      VL AC+   DL  G  +HG    CGF+ D  +
Sbjct: 78  GFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVV 137

Query: 269 SAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER 328
             +L+ MY E +  L  A   F+   ++DVV WSSI+  + Q+G  SE + +FS+M  E 
Sbjct: 138 ETSLLCMYGEMS-CLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEA 196

Query: 329 IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSH 388
           +EP+SVT+L++  +C+    L  G  VH Y+++  +  + S+ N+L+ MY K G + S+ 
Sbjct: 197 VEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAE 256

Query: 389 QIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG 448
           ++F  +  R    WT +IS Y   G  +EAL +F +MQE  +EP+ +T++ +L AC   G
Sbjct: 257 RLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLG 316

Query: 449 LVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILS-- 506
            VKE  ++   V++              ++L   +G + D  KV  T+  K    ILS  
Sbjct: 317 RVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKT---ILSWN 373

Query: 507 SLVSACRIHGRLEVAEMLAHQL 528
           +L+S    +G+ E A +L  Q+
Sbjct: 374 TLISIFTRNGQPEEALLLFVQM 395


>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
 gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
 gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
 gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
 gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 882

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 190/575 (33%), Positives = 312/575 (54%), Gaps = 5/575 (0%)

Query: 3   SKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDAD 62
           S  +YE+ L +Y  EL  S +  ++  + SV+ A       +  G  LH  ALKSG ++ 
Sbjct: 184 SHGYYEEALEIY-HELKNSWIVPDSFTVSSVLPAFGNLLVVKQ-GQGLHGFALKSGVNSV 241

Query: 63  PVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL 122
            V++N L++MY KF +P  A ++FDEM  RD++S+N++I  + +      S+ MF E  L
Sbjct: 242 VVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLE-NL 300

Query: 123 CGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL 182
             F      ++ ++  C  + +L L + I+  ++  G F L   V   L+D+Y+KC   +
Sbjct: 301 DQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAG-FVLESTVRNILIDVYAKCGDMI 359

Query: 183 IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
            A  VF  M  ++ VSW ++ISG I S +    + LF+ M     +   +T  +++    
Sbjct: 360 TARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVST 419

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
            L DL+ GK +H      G   D  +S AL+ MY +C E     +I F      D V W+
Sbjct: 420 RLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKI-FSSMGTGDTVTWN 478

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
           ++I    + GD +  +++ ++MR   + P+  T L  L  C   +    G  +HC +++ 
Sbjct: 479 TVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRF 538

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
           G   ++ IGNAL+ MYSKCG + +S ++F  M+ RD V+WT +I  YG +G GE+AL+ F
Sbjct: 539 GYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETF 598

Query: 423 LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGK 482
            +M++SG+ PD++  +AI+ AC+H+GLV E    F  +    KI   IEHYAC VDLL +
Sbjct: 599 ADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSR 658

Query: 483 SGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLL 542
           S KI  A + +  MP+KP   I +S++ ACR  G +E AE ++ ++IE  P++     L 
Sbjct: 659 SQKISKAEEFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILA 718

Query: 543 SMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           S   +    W     + + ++ K ++K+ G+S IE
Sbjct: 719 SNAYAALRKWDKVSLIRKSLKDKHITKNPGYSWIE 753



 Score =  238 bits (606), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 145/439 (33%), Positives = 235/439 (53%), Gaps = 5/439 (1%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
            + + L  Y + L  S +  +    PSVIKACA        G  ++   L  G ++D  +
Sbjct: 86  LFPEALEFYGK-LRESKVSPDKYTFPSVIKACA-GLFDAEMGDLVYEQILDMGFESDLFV 143

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
            N+L+ MY++      A Q+FDEMP RD +SWNS+I+ ++ +G+Y  +LE++ E+     
Sbjct: 144 GNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWI 203

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
           V  +  ++ ++     +  ++ G+ +H   +        V V+  L+ +Y K      A 
Sbjct: 204 VPDSFTVSSVLPAFGNLLVVKQGQGLHGFAL-KSGVNSVVVVNNGLVAMYLKFRRPTDAR 262

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
           RVF++M +R+ VS+  MI G +  +  +  + +F     +  KP  +T++ VL AC  LR
Sbjct: 263 RVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLE-NLDQFKPDLLTVSSVLRACGHLR 321

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
           DL   K I+ Y    GF  +  +   L+ +Y +C + +  AR +F   + KD V W+SII
Sbjct: 322 DLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMI-TARDVFNSMECKDTVSWNSII 380

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
            GY QSGDL EAMKLF  M +   + + +T L ++S  TR + L  G G+H   +K+G+ 
Sbjct: 381 SGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGIC 440

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            D+S+ NAL++MY+KCG +  S +IF+ M   D V+W T+IS     G     LQ+  +M
Sbjct: 441 IDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQM 500

Query: 426 QESGVEPDAITVLAILSAC 444
           ++S V PD  T L  L  C
Sbjct: 501 RKSEVVPDMATFLVTLPMC 519



 Score =  215 bits (548), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 140/511 (27%), Positives = 265/511 (51%), Gaps = 8/511 (1%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEM-PYRDTISWNSIINCFTQN 107
           ++H   +  G D+    S  LI  Y+ F +P S+  +F  + P ++   WNSII  F++N
Sbjct: 25  RIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIRAFSKN 84

Query: 108 GFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFV 167
           G +  +LE + ++              +I  C+ + + E+G  ++   I+D  FE  +FV
Sbjct: 85  GLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQ-ILDMGFESDLFV 143

Query: 168 STALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV 227
             AL+D+YS+      A +VF++M +R+ VSW ++ISG      Y+  ++++  ++   +
Sbjct: 144 GNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWI 203

Query: 228 KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPAR 287
            P   T++ VL A   L  ++ G+ +HG+A   G +    ++  L+ MY +       AR
Sbjct: 204 VPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTD-AR 262

Query: 288 IIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQS 347
            +F+   V+D V ++++I GY +   + E++++F    L++ +P+ +T+ ++L +C    
Sbjct: 263 RVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLE-NLDQFKPDLLTVSSVLRACGHLR 321

Query: 348 FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLIS 407
            LS    ++ Y++KAG   + ++ N L+++Y+KCG + ++  +FN M  +D VSW ++IS
Sbjct: 322 DLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIIS 381

Query: 408 GYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIA 467
           GY   G   EA++LF  M     + D IT L ++S       +K  + L +N +K   I 
Sbjct: 382 GYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKS-GIC 440

Query: 468 LAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQ 527
           + +      +D+  K G++ D+ K+ S+M     T   ++++SAC   G       +  Q
Sbjct: 441 IDLSVSNALIDMYAKCGEVGDSLKIFSSMGTG-DTVTWNTVISACVRFGDFATGLQVTTQ 499

Query: 528 LIEAE--PENAANYTLLSMVCSESGNWLGAE 556
           + ++E  P+ A     L M  S +   LG E
Sbjct: 500 MRKSEVVPDMATFLVTLPMCASLAAKRLGKE 530



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 154/305 (50%), Gaps = 1/305 (0%)

Query: 230 TRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARII 289
           TRV+   +  A +   +L   + IH      G D     S  L+  Y    E      + 
Sbjct: 3   TRVSSPFISRALSSSSNLNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVF 62

Query: 290 FERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFL 349
              +  K+V +W+SIIR +S++G   EA++ + ++R  ++ P+  T  +++ +C      
Sbjct: 63  RRVSPAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDA 122

Query: 350 SHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGY 409
             G  V+  I+  G   D+ +GNAL++MYS+ G +T + Q+F+EM  RD VSW +LISGY
Sbjct: 123 EMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGY 182

Query: 410 GFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA 469
             HGY EEAL+++ E++ S + PD+ TV ++L A  +  +VK+ + L    +K    ++ 
Sbjct: 183 SSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVV 242

Query: 470 IEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLI 529
           + +    V +  K  +  DA +V   M ++ S    + +    ++    E   M    L 
Sbjct: 243 VVNNGL-VAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLD 301

Query: 530 EAEPE 534
           + +P+
Sbjct: 302 QFKPD 306


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 193/611 (31%), Positives = 324/611 (53%), Gaps = 65/611 (10%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEM 89
           LP V+KAC    +++  G   H     +G +++  I N+L++MY++    E A  +FDE+
Sbjct: 120 LPHVLKACGELPSYR-CGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEI 178

Query: 90  PYR---DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISL------CS 140
             R   D ISWNSI++   ++     +L++F +M L          + IIS+      C 
Sbjct: 179 TQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACG 238

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
            +  +   +++H   I +G+F L VFV  AL+D Y+KC     A++VF  M  ++ VSW 
Sbjct: 239 SLKAVPQTKEVHGNAIRNGTF-LDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWN 297

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVK-------------------------------- 228
           AM++G   S N+    +LF+ M++E +                                 
Sbjct: 298 AMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFS 357

Query: 229 ---PTRVTLTIVLLACAELRDLRNGKAIHGYAY--CC--------GFDFDHHLSAALMHM 275
              P  VT+  VL ACA L     G  IH Y+   C         G D D  +  AL+ M
Sbjct: 358 GSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDM 417

Query: 276 YCECTEALHPARIIFERTKV--KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER--IEP 331
           Y +C  +   AR IF+   +  ++VV W+ +I G++Q GD ++A+KLF  M  E   + P
Sbjct: 418 YSKC-RSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAP 476

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS---IGNALMNMYSKCGSITSSH 388
           N+ T+  IL +C   + +  G  +H Y+++    +D S   + N L+NMYSKCG + ++ 
Sbjct: 477 NAYTISCILMACAHLAAIRIGKQIHAYVLRHH-QYDSSAYFVANCLINMYSKCGDVDTAR 535

Query: 389 QIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG 448
            +F+ M+ +  +SWT++++GYG HG G EAL +F +M+++G  PD IT L +L AC+H G
Sbjct: 536 HVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCG 595

Query: 449 LVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSL 508
           +V +  + F+++  +  +    EHYA  +DLL + G+++ A K V  MPM+P+  +  +L
Sbjct: 596 MVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVAL 655

Query: 509 VSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLS 568
           +SACR+H  +E+AE   ++L+E   EN  +YTL+S + + +G W     +  +M+  G+ 
Sbjct: 656 LSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIK 715

Query: 569 KSYGFSRIENE 579
           K  G S ++ +
Sbjct: 716 KRPGCSWVQGQ 726



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 138/521 (26%), Positives = 243/521 (46%), Gaps = 67/521 (12%)

Query: 61  ADPVIS-----NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLE 115
           ++P IS       +++ Y      + A  + + +     + WN +I    + G    ++ 
Sbjct: 44  SEPFISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAIN 103

Query: 116 MFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLY 175
           +   M   G  L    L  ++  C ++     G   H L+  +G FE +VF+  AL+ +Y
Sbjct: 104 VSCRMLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNG-FESNVFICNALVAMY 162

Query: 176 SKCHHWLIALRVFEQMVIR---NEVSWTAMISGCIDSQNYDTGIDLFRAMQR-EGVKPTR 231
           S+C     A  +F+++  R   + +SW +++S  + S N  T +DLF  M      KPT 
Sbjct: 163 SRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTN 222

Query: 232 -----VTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
                +++  +L AC  L+ +   K +HG A   G   D  +  AL+  Y +C   +  A
Sbjct: 223 ERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCG-LMENA 281

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE---------------- 330
             +F   + KDVV W++++ GYSQSG+   A +LF  MR E I                 
Sbjct: 282 VKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQR 341

Query: 331 -------------------PNSVTLLAILSSCTRQSFLSHGLGVHCYIMK---------- 361
                              PN VT++++LS+C      S G+ +H Y +K          
Sbjct: 342 GCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDF 401

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA--ARDFVSWTTLISGYGFHGYGEEAL 419
            G + D+ + NAL++MYSKC S  ++  IF+++    R+ V+WT +I G+  +G   +AL
Sbjct: 402 GGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDAL 461

Query: 420 QLFLEM--QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYA-CY 476
           +LF+EM  +  GV P+A T+  IL AC H   ++  + +   V++  +   +    A C 
Sbjct: 462 KLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCL 521

Query: 477 VDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGR 517
           +++  K G ++ A  V  +M  K +    +S+++   +HGR
Sbjct: 522 INMYSKCGDVDTARHVFDSMSQKSAIS-WTSMMTGYGMHGR 561



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 138/554 (24%), Positives = 246/554 (44%), Gaps = 124/554 (22%)

Query: 6   FYEQTLHLYKQELHP-SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPV 64
           F + TL ++++  +  S + S   ILP+     A  QT +     +H  A+++G+  D  
Sbjct: 209 FSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKE-----VHGNAIRNGTFLDVF 263

Query: 65  ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEM-------- 116
           + N+LI  YAK    E+A ++F+ M ++D +SWN+++  ++Q+G +  + E+        
Sbjct: 264 VGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKEN 323

Query: 117 ---------------------------FREMYLCGFVLKAELLAGIISLCSQIGELELGR 149
                                      FR+M   G +     +  ++S C+ +G    G 
Sbjct: 324 IPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGM 383

Query: 150 QIHA------LVIVDGSF---ELSVFVSTALLDLYSKCHHWLIALRVFEQMVI--RNEVS 198
           +IHA      L+ +D  F   +  + V  AL+D+YSKC  +  A  +F+ + +  RN V+
Sbjct: 384 EIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVT 443

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQRE--GVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           WT MI G     + +  + LF  M  E  GV P   T++ +L+ACA L  +R GK IH Y
Sbjct: 444 WTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAY 503

Query: 257 AYCCGFDFDHH--------LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
                    HH        ++  L++MY +C + +  AR +F+    K  + W+S++ GY
Sbjct: 504 V------LRHHQYDSSAYFVANCLINMYSKCGD-VDTARHVFDSMSQKSAISWTSMMTGY 556

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
              G  SEA+ +F +MR     P+ +T L +L +C+           HC ++  GL++  
Sbjct: 557 GMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACS-----------HCGMVDQGLSY-- 603

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
                                 F+ M+A D+     L      + Y  + L  F  + ++
Sbjct: 604 ----------------------FDSMSA-DY----GLTPRAEHYAYAIDLLARFGRLDKA 636

Query: 429 -------GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYV---D 478
                   +EP A+  +A+LSAC     V+ AE   N     K + +  E+   Y    +
Sbjct: 637 WKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALN-----KLVEMNAENDGSYTLISN 691

Query: 479 LLGKSGKIEDACKV 492
           +   +G+ +D  ++
Sbjct: 692 IYATAGRWKDVARI 705



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 135/567 (23%), Positives = 242/567 (42%), Gaps = 83/567 (14%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKS----------G 58
           + L++++Q +  SG   N   + SV+ ACA        G+++H  +LK+          G
Sbjct: 346 EALNVFRQMIF-SGSLPNCVTIISVLSACASLGAFSQ-GMEIHAYSLKNCLLTLDNDFGG 403

Query: 59  SDADPVISNSLISMYAKFSKPESAYQLFDEMPY--RDTISWNSIINCFTQNGFYVRSLEM 116
            D D ++ N+LI MY+K    ++A  +FD++P   R+ ++W  +I    Q G    +L++
Sbjct: 404 EDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKL 463

Query: 117 FREMY--LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSV-FVSTALLD 173
           F EM     G    A  ++ I+  C+ +  + +G+QIHA V+    ++ S  FV+  L++
Sbjct: 464 FVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLIN 523

Query: 174 LYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVT 233
           +YSKC     A  VF+ M  ++ +SWT+M++G          +D+F  M++ G  P  +T
Sbjct: 524 MYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDIT 583

Query: 234 LTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERT 293
             +VL AC+       G    G +Y      D+ L+    H                   
Sbjct: 584 FLVVLYACSHC-----GMVDQGLSYFDSMSADYGLTPRAEH------------------- 619

Query: 294 KVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGL 353
                  ++  I   ++ G L +A K    M +   EP +V  +A+LS+C   S +   L
Sbjct: 620 -------YAYAIDLLARFGRLDKAWKTVKDMPM---EPTAVVWVALLSACRVHSNVE--L 667

Query: 354 GVHCYIMKAGLNFDVSIGNALM-NMYSKCGSITSSHQIFNEM-----AARDFVSWTTLIS 407
             H       +N +      L+ N+Y+  G      +I + M       R   SW     
Sbjct: 668 AEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQK 727

Query: 408 GYGFHGYGEEALQLFLEMQESGVEPDAITVL-AILSACNHAGLVKEAETLFNNVMKEKKI 466
           G             F+  +   + P    +L +++      G V E     ++V +E+K 
Sbjct: 728 GTA---------SFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKN 778

Query: 467 ALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLE-VAEMLA 525
            L +EH          S K+  A  +++T P  P  RI  +L      H     +++++ 
Sbjct: 779 NLLVEH----------SEKLALAYGLLTTFPGCP-IRITKNLRVCGDCHSAFTYISKIVD 827

Query: 526 HQLIEAEPENAANYTLLSMVCSESGNW 552
           H+++  +P    ++   S  CS  G W
Sbjct: 828 HEIVVRDPSRFHHFKNGS--CSCGGYW 852


>gi|356506884|ref|XP_003522204.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 752

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 177/570 (31%), Positives = 307/570 (53%), Gaps = 4/570 (0%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           YE  +      + P GL  +  ++   +KAC     +  FG  LH  ++KSG      +S
Sbjct: 138 YEALILFSNMWVQP-GLQRDQFMISVALKACGLG-VNICFGELLHGFSVKSGLINSVFVS 195

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           ++LI MY K  K E   ++F +M  R+ +SW +II      G+ + +L  F EM++    
Sbjct: 196 SALIDMYMKVGKIEQGCRVFKKMTKRNVVSWTAIIAGLVHAGYNMEALLYFSEMWISKVG 255

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
             +   A  +   +    L  G+ IH   I  G F+ S FV   L  +Y+KC      +R
Sbjct: 256 YDSHTFAIALKASADSSLLHHGKAIHTQTIKQG-FDESSFVINTLATMYNKCGKADYVMR 314

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           +FE+M + + VSWT +I+  +     +  ++ F+ M++  V P + T   V+ ACA L  
Sbjct: 315 LFEKMKMPDVVSWTTLITTYVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANLAI 374

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
            + G+ IHG+    G      ++ +++ +Y + +  L  A ++F     KD++ WS+II 
Sbjct: 375 AKWGEQIHGHVLRLGLVDALSVANSIVTLYSK-SGLLKSASLVFHGITRKDIISWSTIIA 433

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
            YSQ G   EA    S MR E  +PN   L ++LS C   + L  G  VH +++  G++ 
Sbjct: 434 VYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHVLCIGIDH 493

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           +  + +AL++MYSKCGS+  + +IFN M   + +SWT +I+GY  HGY +EA+ LF ++ 
Sbjct: 494 EAMVHSALISMYSKCGSVEEASKIFNGMKINNIISWTAMINGYAEHGYSQEAINLFEKIS 553

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
             G++PD +T + +L+AC+HAG+V      F  +  E +I+ + EHY C +DLL ++G++
Sbjct: 554 SVGLKPDYVTFIGVLTACSHAGMVDLGFYYFMLMTNEYQISPSKEHYGCIIDLLCRAGRL 613

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546
            +A  ++ +MP      + S+L+ +CR+HG ++     A QL+  +P +A  +  L+ + 
Sbjct: 614 SEAEHMIRSMPCYTDDVVWSTLLRSCRVHGDVDRGRWTAEQLLRLDPNSAGTHIALANIY 673

Query: 547 SESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
           +  G W  A  + ++M++KG+ K  G+S +
Sbjct: 674 AAKGRWKEAAHIRKLMKSKGVIKERGWSWV 703



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 122/419 (29%), Positives = 217/419 (51%), Gaps = 12/419 (2%)

Query: 85  LFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI-ISLCSQIG 143
           +FD+M +RD ISW ++I  +        +L +F  M++   + + + +  + +  C    
Sbjct: 112 MFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVQPGLQRDQFMISVALKACGLGV 171

Query: 144 ELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMI 203
            +  G  +H   +  G    SVFVS+AL+D+Y K        RVF++M  RN VSWTA+I
Sbjct: 172 NICFGELLHGFSVKSGLIN-SVFVSSALIDMYMKVGKIEQGCRVFKKMTKRNVVSWTAII 230

Query: 204 SGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFD 263
           +G + +      +  F  M    V     T  I L A A+   L +GKAIH      GFD
Sbjct: 231 AGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFD 290

Query: 264 FDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSR 323
               +   L  MY +C +A +  R +FE+ K+ DVV W+++I  Y Q G+   A++ F R
Sbjct: 291 ESSFVINTLATMYNKCGKADYVMR-LFEKMKMPDVVSWTTLITTYVQKGEEEHAVEAFKR 349

Query: 324 MRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS 383
           MR   + PN  T  A++S+C   +    G  +H ++++ GL   +S+ N+++ +YSK G 
Sbjct: 350 MRKSNVSPNKYTFAAVISACANLAIAKWGEQIHGHVLRLGLVDALSVANSIVTLYSKSGL 409

Query: 384 ITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
           + S+  +F+ +  +D +SW+T+I+ Y   GY +EA      M+  G +P+   + ++LS 
Sbjct: 410 LKSASLVFHGITRKDIISWSTIIAVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSV 469

Query: 444 CNHAGLVKEAETLFNNVMKEKKIALAIEH----YACYVDLLGKSGKIEDACKVVSTMPM 498
           C    L+++ + +  +V+      + I+H    ++  + +  K G +E+A K+ + M +
Sbjct: 470 CGSMALLEQGKQVHAHVL-----CIGIDHEAMVHSALISMYSKCGSVEEASKIFNGMKI 523



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 94/179 (52%), Gaps = 1/179 (0%)

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER-IEPNSVTLLAILSSCT 344
           +R +F++   +D + W+++I GY  + D  EA+ LFS M ++  ++ +   +   L +C 
Sbjct: 109 SRYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVQPGLQRDQFMISVALKACG 168

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
               +  G  +H + +K+GL   V + +AL++MY K G I    ++F +M  R+ VSWT 
Sbjct: 169 LGVNICFGELLHGFSVKSGLINSVFVSSALIDMYMKVGKIEQGCRVFKKMTKRNVVSWTA 228

Query: 405 LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKE 463
           +I+G    GY  EAL  F EM  S V  D+ T    L A   + L+   + +    +K+
Sbjct: 229 IIAGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQ 287



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 68/144 (47%), Gaps = 5/144 (3%)

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ-ESGV 430
           N+ +    K G +  S  +F++M  RD +SWTTLI+GY       EAL LF  M  + G+
Sbjct: 94  NSELKQLVKQGQLCKSRYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVQPGL 153

Query: 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDAC 490
           + D   +   L AC     +   E L    +K   I  ++   +  +D+  K GKIE  C
Sbjct: 154 QRDQFMISVALKACGLGVNICFGELLHGFSVKSGLIN-SVFVSSALIDMYMKVGKIEQGC 212

Query: 491 KVVSTMPMK---PSTRILSSLVSA 511
           +V   M  +     T I++ LV A
Sbjct: 213 RVFKKMTKRNVVSWTAIIAGLVHA 236


>gi|357514793|ref|XP_003627685.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|358344437|ref|XP_003636296.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|358345563|ref|XP_003636846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502231|gb|AES83434.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502781|gb|AES83984.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355521707|gb|AET02161.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 791

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 183/537 (34%), Positives = 304/537 (56%), Gaps = 14/537 (2%)

Query: 46  FGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT 105
           FGLQLH   +K G   +  I N+L++MY+++   + A ++F+EM  RD +SWN++++ + 
Sbjct: 205 FGLQLHSLVVKCGFGCEVFIGNALVTMYSRWGGLDEAGRVFNEMTIRDLVSWNAMLSGYA 264

Query: 106 QNG--FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFEL 163
           Q G  + + ++ +F  M   G +L    L G IS C     LE G+QIH L    G +  
Sbjct: 265 QEGECYGLEAVLLFGNMVREGMLLDHVSLTGAISACGYTKNLEFGKQIHGLAQKLG-YGT 323

Query: 164 SVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQ 223
            V V   L+  YSKC     A  VF+ M  RN VSWT +IS  ID +N    + LF AM+
Sbjct: 324 HVAVCNVLISTYSKCKVLRDAKAVFQDMSARNVVSWTTLIS--IDEENV---VSLFNAMR 378

Query: 224 REGVKPTRVTLTIVLLACAELRDL-RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEA 282
            +GV P  VT  I LL    +R++ + G  +HG         + ++S +L+ MY +  E+
Sbjct: 379 VDGVYPNDVTF-IGLLHAITIRNMVKEGLMVHGLCLKSCLSSEQNVSNSLITMYAK-FES 436

Query: 283 LHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSS 342
           +  ++ IFE    +  + W+++I GY+Q+G   EA   F    ++ I+PN  T  ++L++
Sbjct: 437 IQESKKIFEELNYQGTISWNALISGYAQNGLCKEAFLTFLSA-IKEIKPNQYTFGSVLNA 495

Query: 343 CTRQSFLS--HGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFV 400
                 +S  HG   H +++K GLN D  +  AL++MY K G+I  S ++FNE   +   
Sbjct: 496 IAAAEDISLKHGQRCHSHLIKLGLNTDPFVAGALLDMYGKRGNINESQRVFNETPEKTQF 555

Query: 401 SWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNV 460
           SWT +IS Y  HG  E  + L+ E++  G   D+IT L++L+AC   G+V     +F+++
Sbjct: 556 SWTGMISAYARHGDYESVMSLYKEIEREGSNLDSITFLSVLAACCRKGMVDVGHIIFDSM 615

Query: 461 MKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEV 520
           +K+  I    EHY+  VD+LG+ G++++A +++  +P  P   +L SL+ +C++HG +E+
Sbjct: 616 VKKHSIEPTPEHYSIMVDMLGRVGRLDEAEELMHQIPGGPGLSVLQSLLGSCKLHGNVEM 675

Query: 521 AEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           AE +   LI+ +P ++  Y L++ + +E GNW    EV + MR +G+ K  GFS ++
Sbjct: 676 AERVVDSLIQMDPGSSGPYVLMANLYAEKGNWEKVAEVRKGMRGRGVKKEVGFSWVD 732



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 155/513 (30%), Positives = 264/513 (51%), Gaps = 27/513 (5%)

Query: 46  FGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT 105
            G Q+H   + +G  +   +SNSL+ MY K  + E A  +F+ +   D +SWN+I++ F 
Sbjct: 102 LGAQIHGFVVATGFVSRVTVSNSLMKMYCKAGRFELALCVFEGLSCPDIVSWNTILSGFE 161

Query: 106 QNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELE-----LGRQIHALVIVDGS 160
           ++   V +L     M+L G V         +S C      +      G Q+H+LV+  G 
Sbjct: 162 KS---VDALNFACFMHLNGVVFDPVTYTTALSFCWDRDYWDDHGFLFGLQLHSLVVKCG- 217

Query: 161 FELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISG-CIDSQNYD-TGIDL 218
           F   VF+  AL+ +YS+      A RVF +M IR+ VSW AM+SG   + + Y    + L
Sbjct: 218 FGCEVFIGNALVTMYSRWGGLDEAGRVFNEMTIRDLVSWNAMLSGYAQEGECYGLEAVLL 277

Query: 219 FRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCE 278
           F  M REG+    V+LT  + AC   ++L  GK IHG A   G+     +   L+  Y +
Sbjct: 278 FGNMVREGMLLDHVSLTGAISACGYTKNLEFGKQIHGLAQKLGYGTHVAVCNVLISTYSK 337

Query: 279 CTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLA 338
           C + L  A+ +F+    ++VV W+++I     S D    + LF+ MR++ + PN VT + 
Sbjct: 338 C-KVLRDAKAVFQDMSARNVVSWTTLI-----SIDEENVVSLFNAMRVDGVYPNDVTFIG 391

Query: 339 ILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARD 398
           +L + T ++ +  GL VH   +K+ L+ + ++ N+L+ MY+K  SI  S +IF E+  + 
Sbjct: 392 LLHAITIRNMVKEGLMVHGLCLKSCLSSEQNVSNSLITMYAKFESIQESKKIFEELNYQG 451

Query: 399 FVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLV--KEAETL 456
            +SW  LISGY  +G  +EA   FL   +  ++P+  T  ++L+A   A  +  K  +  
Sbjct: 452 TISWNALISGYAQNGLCKEAFLTFLSAIKE-IKPNQYTFGSVLNAIAAAEDISLKHGQRC 510

Query: 457 FNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRI 514
            ++++   K+ L  + +     +D+ GK G I ++ +V +  P K      + ++SA   
Sbjct: 511 HSHLI---KLGLNTDPFVAGALLDMYGKRGNINESQRVFNETPEKTQFS-WTGMISAYAR 566

Query: 515 HGRLEVAEMLAHQLIEAEPENAANYTLLSMVCS 547
           HG  E + M  ++ IE E  N  + T LS++ +
Sbjct: 567 HGDYE-SVMSLYKEIEREGSNLDSITFLSVLAA 598



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 114/382 (29%), Positives = 182/382 (47%), Gaps = 25/382 (6%)

Query: 83  YQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQI 142
           + LF+++P  +  S N  +  F       ++L +F+      F+   + +   +S  +  
Sbjct: 38  HNLFEKIPQPNASSINRSMLNFLHKNLPFQALSVFKNQTQFPFLQNIDEVTLALSFKACR 97

Query: 143 GELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAM 202
           GE  LG QIH  V+  G F   V VS +L+ +Y K   + +AL VFE +   + VSW  +
Sbjct: 98  GEFILGAQIHGFVVATG-FVSRVTVSNSLMKMYCKAGRFELALCVFEGLSCPDIVSWNTI 156

Query: 203 ISG---CIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN------GKAI 253
           +SG    +D+ N+         M   GV    VT T  L  C + RD  +      G  +
Sbjct: 157 LSGFEKSVDALNFAC------FMHLNGVVFDPVTYTTALSFCWD-RDYWDDHGFLFGLQL 209

Query: 254 HGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGD 313
           H     CGF  +  +  AL+ MY      L  A  +F    ++D+V W++++ GY+Q G+
Sbjct: 210 HSLVVKCGFGCEVFIGNALVTMYSRWG-GLDEAGRVFNEMTIRDLVSWNAMLSGYAQEGE 268

Query: 314 LS--EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
               EA+ LF  M  E +  + V+L   +S+C     L  G  +H    K G    V++ 
Sbjct: 269 CYGLEAVLLFGNMVREGMLLDHVSLTGAISACGYTKNLEFGKQIHGLAQKLGYGTHVAVC 328

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
           N L++ YSKC  +  +  +F +M+AR+ VSWTTLIS        E  + LF  M+  GV 
Sbjct: 329 NVLISTYSKCKVLRDAKAVFQDMSARNVVSWTTLIS-----IDEENVVSLFNAMRVDGVY 383

Query: 432 PDAITVLAILSACNHAGLVKEA 453
           P+ +T + +L A     +VKE 
Sbjct: 384 PNDVTFIGLLHAITIRNMVKEG 405


>gi|225438700|ref|XP_002277701.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
            mitochondrial [Vitis vinifera]
          Length = 1008

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 183/565 (32%), Positives = 315/565 (55%), Gaps = 8/565 (1%)

Query: 17   ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
            ++   G   +   + +++ AC+  +     G   H  + +   D++  ISN+L++ Y+  
Sbjct: 448  DMQFEGFDPDAISIVNILSACSKLEAIL-LGKAAHAFSFRKEFDSNLNISNALLAFYSDC 506

Query: 77   SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
             K  S+++LF +MP R+ ISWN++I+    NG   +++ +  +M      L    L  II
Sbjct: 507  GKLSSSFKLFQKMPLRNAISWNTLISGCVHNGDTKKAVALLHKMQQEKMELDLVTLISII 566

Query: 137  SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
             +C     L  G  +H   I  G F   V +  AL+ +Y  C        +FE M  R+ 
Sbjct: 567  PICRVAENLIQGMTLHGYAIKTG-FACDVSLVNALISMYFNCGDINAGKFLFEVMPWRSI 625

Query: 197  VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
            VSW A+I+G       +  +  F  M REG KP  VTL  +L +C   R L  GK+IH +
Sbjct: 626  VSWNALITGYRFHYLQNEVMASFCQMIREGQKPNYVTLLNLLPSC---RTLLQGKSIHAF 682

Query: 257  AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
            A   G   +  +  +L+ MY    E ++    +FE    +D+ +W++I+  Y Q+ +  E
Sbjct: 683  AVRTGVIVETPIITSLISMYAR-FENINSFIFLFEMGGKEDIALWNAIMSVYVQTKNAKE 741

Query: 317  AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
            ++  F  +   R+EP+ +T L+++S+C + S L+    V  Y+++ G +  + I NAL++
Sbjct: 742  SVTFFCELLHARVEPDYITFLSLISACVQLSSLNLSNSVMAYVIQKGFDKHIVISNALID 801

Query: 377  MYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAIT 436
            ++++CG+I+ + +IF  ++++D VSW+T+I+GYG HG  E AL L  +M+ SG++PD IT
Sbjct: 802  LFARCGNISIAKKIFEGLSSKDAVSWSTMINGYGLHGDSEAALALLSQMRLSGMKPDGIT 861

Query: 437  VLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
              ++LSAC+H G + +   +FN+ M E+ +   +EHYAC VDLLG++G++ +A   V  +
Sbjct: 862  YASVLSACSHGGFIDQGWMIFNS-MVEEGVPRRMEHYACMVDLLGRTGQLNEAYDFVEKL 920

Query: 497  PMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAE 556
            P KPS  +L SL+ AC IHG +++ E ++  L E +P+N+ +Y +L  + + +G W+ A 
Sbjct: 921  PCKPSVSLLESLLGACIIHGNVKLGEKISSLLFELDPKNSGSYVMLYNIYAAAGRWMDAN 980

Query: 557  EVWRVMRAKGLSKSYGFSRIE-NEY 580
             V   M  + L K  GFS +E N Y
Sbjct: 981  RVRSDMEERQLRKIPGFSLVEGNRY 1005



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 145/534 (27%), Positives = 266/534 (49%), Gaps = 22/534 (4%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G  S+    P VIKAC  A         +HC  L++  + + VI  +L+  YAK  +   
Sbjct: 150 GCPSDDFTFPFVIKACT-ALGAVWIAEGVHCIVLRTSFEENLVIQTALVDFYAKTGRMVK 208

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A  + D++   D ++WN++I+ ++ NGF     E+ R++   G        A II LC++
Sbjct: 209 ARLVLDKISQPDLVTWNALISGYSLNGFDKEVFEVLRQINEMGLKPNVSTFASIIPLCTR 268

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
           +  L++G+ IH  V+  G F    F++ AL+ +Y+   +  IA  +F+    +N V W +
Sbjct: 269 MKCLDIGKSIHGFVVKSG-FSSDEFLTPALISMYAGGGNLFIARDLFDSAAEKNVVIWNS 327

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           MIS    +Q       +F+ M +  ++P  VT   ++  C    +   GK++H +     
Sbjct: 328 MISAYAQNQKSSEAFKMFQQMLKANMQPNVVTFVSIIPCCENSANFWYGKSLHAHVMKYR 387

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
            D    ++ AL+ MY +  + L+ A  IF +   ++++ W+S+I GY  +G    +M  F
Sbjct: 388 LDSQLSVATALLSMYAKLGD-LNSADFIFYQMPRRNLLSWNSMISGYGHNGLWEASMDAF 446

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
             M+ E  +P++++++ ILS+C++   +  G   H +  +   + +++I NAL+  YS C
Sbjct: 447 CDMQFEGFDPDAISIVNILSACSKLEAILLGKAAHAFSFRKEFDSNLNISNALLAFYSDC 506

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
           G ++SS ++F +M  R+ +SW TLISG   +G  ++A+ L  +MQ+  +E D +T+++I+
Sbjct: 507 GKLSSSFKLFQKMPLRNAISWNTLISGCVHNGDTKKAVALLHKMQQEKMELDLVTLISII 566

Query: 442 SACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG-------KSGKIEDACKVVS 494
             C  A  + +  TL    +K          +AC V L+          G I     +  
Sbjct: 567 PICRVAENLIQGMTLHGYAIKTG--------FACDVSLVNALISMYFNCGDINAGKFLFE 618

Query: 495 TMPMKPSTRILSSLVSACRIHG-RLEVAEMLAHQLIEAEPENAANYTLLSMVCS 547
            MP + S    ++L++  R H  + EV       + E +  N    TLL+++ S
Sbjct: 619 VMPWR-SIVSWNALITGYRFHYLQNEVMASFCQMIREGQKPNYV--TLLNLLPS 669



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 143/476 (30%), Positives = 250/476 (52%), Gaps = 15/476 (3%)

Query: 64  VISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC 123
           V++  +IS +     PE A   F+ +        N +I     +G +   L ++ +  + 
Sbjct: 91  VVAEFIISCF-HLGAPELALSAFEAIEKPSVFLQNLMIRRLCDHGLFEDVLCVYLKCRVL 149

Query: 124 GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
           G          +I  C+ +G + +   +H +V+   SFE ++ + TAL+D Y+K    + 
Sbjct: 150 GCPSDDFTFPFVIKACTALGAVWIAEGVHCIVL-RTSFEENLVIQTALVDFYAKTGRMVK 208

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGI-DLFRAMQREGVKPTRVTLTIVLLACA 242
           A  V +++   + V+W A+ISG      +D  + ++ R +   G+KP   T   ++  C 
Sbjct: 209 ARLVLDKISQPDLVTWNALISG-YSLNGFDKEVFEVLRQINEMGLKPNVSTFASIIPLCT 267

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
            ++ L  GK+IHG+    GF  D  L+ AL+ MY      L  AR +F+    K+VVIW+
Sbjct: 268 RMKCLDIGKSIHGFVVKSGFSSDEFLTPALISMYAGGGN-LFIARDLFDSAAEKNVVIWN 326

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
           S+I  Y+Q+   SEA K+F +M    ++PN VT ++I+  C   +   +G  +H ++MK 
Sbjct: 327 SMISAYAQNQKSSEAFKMFQQMLKANMQPNVVTFVSIIPCCENSANFWYGKSLHAHVMKY 386

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
            L+  +S+  AL++MY+K G + S+  IF +M  R+ +SW ++ISGYG +G  E ++  F
Sbjct: 387 RLDSQLSVATALLSMYAKLGDLNSADFIFYQMPRRNLLSWNSMISGYGHNGLWEASMDAF 446

Query: 423 LEMQESGVEPDAITVLAILSACN--HAGLVKEAETLFNNVMKEKKIALAIEH--YACYVD 478
            +MQ  G +PDAI+++ ILSAC+   A L+ +A   F +  KE    L I +   A Y D
Sbjct: 447 CDMQFEGFDPDAISIVNILSACSKLEAILLGKAAHAF-SFRKEFDSNLNISNALLAFYSD 505

Query: 479 LLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPE 534
                GK+  + K+   MP++ +    ++L+S C  +G  + A  L H++ + + E
Sbjct: 506 ----CGKLSSSFKLFQKMPLRNAIS-WNTLISGCVHNGDTKKAVALLHKMQQEKME 556


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 176/543 (32%), Positives = 292/543 (53%), Gaps = 34/543 (6%)

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           N+L+S Y+K    +   ++FD MP  D +SWNS+++ +  NG    S+ ++  M   G V
Sbjct: 75  NTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSV 134

Query: 127 -LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSK-------- 177
            L     + ++ L S  G ++LGRQIH  +   G ++  +FV + L+D+Y+K        
Sbjct: 135 NLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFG-YQSYLFVGSPLVDMYAKTGFINDAN 193

Query: 178 -----------------------CHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDT 214
                                  C   + A ++F+ M  ++ +SWT +I+G   +  +  
Sbjct: 194 RIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKE 253

Query: 215 GIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMH 274
            +D F+ M  EG    + T   VL AC     L  GK IH Y     +  +  + +AL+ 
Sbjct: 254 AVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLD 313

Query: 275 MYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSV 334
           MYC+C    + A  +F + + K+V+ W++++ GY Q+G   EA+++F  M+   I P+  
Sbjct: 314 MYCKCRNVKY-AEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDF 372

Query: 335 TLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEM 394
           TL +++SSC   + L  G   H   + +GL   V++ NAL+ +Y KCGS+  +HQ+F+EM
Sbjct: 373 TLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEM 432

Query: 395 AARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAE 454
             RD VSWT L+SGY   G   E + LF  M   G+ PD +T + +LSAC+ AGLV++  
Sbjct: 433 KIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKGY 492

Query: 455 TLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRI 514
             F  ++KE +I    +HY C +DLL ++G++E+A   ++ MP  P     ++L+S+CR+
Sbjct: 493 HYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWATLLSSCRL 552

Query: 515 HGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFS 574
           +G LE+ +  A  L + EP+N A+Y LLS + +  G W    ++ + MR  G+ K  G S
Sbjct: 553 NGNLEIGKWAAESLHKLEPQNPASYILLSSIYAAKGKWDDVAKLRKGMREMGVKKEPGHS 612

Query: 575 RIE 577
            I+
Sbjct: 613 WIK 615



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 94/204 (46%), Gaps = 7/204 (3%)

Query: 13  LYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISM 72
           + + E+HP         L SVI +CA   + +  G Q H  AL SG      +SN+LI++
Sbjct: 362 MQRNEIHPDDF-----TLGSVISSCANLASLEE-GAQFHGQALASGLICFVTVSNALITL 415

Query: 73  YAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELL 132
           Y K    E A+QLF EM  RD +SW ++++ + Q G    ++ +F  M   G V      
Sbjct: 416 YGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTF 475

Query: 133 AGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV 192
            G++S CS+ G +E G      ++ +          T ++DL S+      A     QM 
Sbjct: 476 VGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMP 535

Query: 193 IR-NEVSWTAMISGCIDSQNYDTG 215
              + + W  ++S C  + N + G
Sbjct: 536 FSPDAIGWATLLSSCRLNGNLEIG 559



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/252 (21%), Positives = 112/252 (44%), Gaps = 51/252 (20%)

Query: 355 VHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGY 414
           +HC I++   N +  + N L+N Y K G + ++  +F+ +   +  SW TL+S Y   GY
Sbjct: 27  LHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQPNLFSWNTLLSAYSKLGY 86

Query: 415 GEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL------ 468
            ++  ++F  M       D ++  ++LS     GL+ E+  ++N ++K+  + L      
Sbjct: 87  LQDMQRVFDSMPNH----DVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFS 142

Query: 469 -------------------------AIEHY----ACYVDLLGKSGKIEDACKVVSTMPMK 499
                                      + Y    +  VD+  K+G I DA ++   +P K
Sbjct: 143 TMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEK 202

Query: 500 PSTRILSSLVSA---CRIHGRLEVAEMLAHQLIEAEPE-NAANYTLLSMVCSESGNWLGA 555
            +  + +++++    CR      + E  A QL +  PE ++ ++T +    +++G +  A
Sbjct: 203 -NIVVYNTMITGLLRCRF-----IVE--AEQLFDNMPEKDSISWTTIITGLTQNGLFKEA 254

Query: 556 EEVWRVMRAKGL 567
            + ++ M  +G 
Sbjct: 255 VDKFKEMGIEGF 266


>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
          Length = 814

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 188/532 (35%), Positives = 296/532 (55%), Gaps = 5/532 (0%)

Query: 48  LQLHCTALKSGSDADPVISNSLISMYAKFSK-PESAYQLFDEMPYRDTISWNSIINCFTQ 106
           LQLH  ALK+    D VI  + + MY K +   + + QLF+ +P  +  S+N+II  + +
Sbjct: 231 LQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSYNAIIVGYAR 290

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQI-GELELGRQIHALVIVDGSFELSV 165
           +   + +L MFR +   G  L    L+G    C+ I G+LE G Q+H L +     + ++
Sbjct: 291 SDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLE-GLQVHGLSM-KSLCQSNI 348

Query: 166 FVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
            V+ A+LD+Y KC   + A  VFE+MV R+ VSW A+I+    + N +  + LF  M + 
Sbjct: 349 CVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQS 408

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
           G++P   T   VL ACA  + L  G  IH          D  +  AL+ MY +C   +  
Sbjct: 409 GMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKCG-MMEK 467

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           A  + +R   + VV W++II G+S      EA K FS+M    ++P++ T   IL +C  
Sbjct: 468 AEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCAN 527

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
              +  G  +H  I+K  L  D  I + L++MYSKCG++     IF +   RDFV+W  +
Sbjct: 528 LVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAM 587

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           + GY  HG GEEAL++F  MQ   V+P+  T LA+L AC H GLV++    F++++    
Sbjct: 588 VCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYG 647

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
           +   +EHY+C VD++G+SG++  A +++  MP +    I  +L+S C+IHG +EVAE  A
Sbjct: 648 LDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSXCKIHGNVEVAEKAA 707

Query: 526 HQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           + +++ EPE++A Y LLS + + +G W    ++ ++MR  GL K  G S IE
Sbjct: 708 YSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWIE 759



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 133/454 (29%), Positives = 218/454 (48%), Gaps = 13/454 (2%)

Query: 18  LHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFS 77
           L  SGL  +   L    +ACA  +     GLQ+H  ++KS   ++  ++N+++ MY K  
Sbjct: 304 LQKSGLGLDEVSLSGAXRACAVIKGDLE-GLQVHGLSMKSLCQSNICVANAILDMYGKCG 362

Query: 78  KPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS 137
               A  +F+EM  RD +SWN+II    QNG   ++L +F  M   G          ++ 
Sbjct: 363 ALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLK 422

Query: 138 LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197
            C+    L  G +IH   I+     L  FV  AL+D+YSKC     A ++ +++  +  V
Sbjct: 423 ACAGWQALNCGMEIHNR-IIKSRMGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVV 481

Query: 198 SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
           SW A+ISG    +  +     F  M   GV P   T   +L  CA L  +  GK IH   
Sbjct: 482 SWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQI 541

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
                  D ++S+ L+ MY +C   +   ++IFE+   +D V W++++ GY+Q G   EA
Sbjct: 542 IKKELQSDAYISSTLVDMYSKCGN-MQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEA 600

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG-VHCYIMKAGLNFDVSIGNALMN 376
           +K+F  M+LE ++PN  T LA+L +C     +  GL   H  +   GL+  +   + +++
Sbjct: 601 LKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVD 660

Query: 377 MYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           +  + G ++ + ++   M    D V W TL+S    HG  E A +    + +  +EP+  
Sbjct: 661 IMGRSGQVSKALELIEGMPFEADAVIWRTLLSXCKIHGNVEVAEKAAYSILQ--LEPEDS 718

Query: 436 TVLAILSAC-NHAGLVKEAETL-----FNNVMKE 463
               +LS    +AG+  E   L     FN + KE
Sbjct: 719 AAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKE 752



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 147/576 (25%), Positives = 257/576 (44%), Gaps = 78/576 (13%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G Q H   + +       ++N LI MY K S    A+++FD MP RDT+SWN+++  +  
Sbjct: 61  GKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAFKVFDGMPQRDTVSWNAMLFGYAG 120

Query: 107 NGFYVRSLEMFR---------------EMYLCGFVLKAELLAGIISLCSQIGELELGRQI 151
            G    + ++F                 M   G V      A ++  CS + +   G QI
Sbjct: 121 RGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQI 180

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKC----HHWLIALRVFEQM-------------VIR 194
           H L +  G F+  V   +ALLD+Y+KC          L +F++M              ++
Sbjct: 181 HGLAVKMG-FDCDVVTGSALLDMYAKCCVQNDDLRGGLELFKEMQKAGVGALQLHGHALK 239

Query: 195 NEVSWTAMI--------------SGCIDS----------QNY----------DTGID--- 217
            +     +I              S C +           Q+Y          D GI+   
Sbjct: 240 TDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSYNAIIVGYARSDKGIEALG 299

Query: 218 LFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYC 277
           +FR +Q+ G+    V+L+    ACA ++    G  +HG +       +  ++ A++ MY 
Sbjct: 300 MFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYG 359

Query: 278 ECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLL 337
           +C  AL  A ++FE    +D V W++II  + Q+G+  + + LF  M    +EP+  T  
Sbjct: 360 KCG-ALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYG 418

Query: 338 AILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR 397
           ++L +C     L+ G+ +H  I+K+ +  D  +G AL++MYSKCG +  + ++ + +A +
Sbjct: 419 SVLKACAGWQALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQ 478

Query: 398 DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLF 457
             VSW  +ISG+      EEA + F +M E GV+PD  T   IL  C +   V+  + + 
Sbjct: 479 TVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIH 538

Query: 458 NNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIH 515
             ++K++   L  + Y  +  VD+  K G ++D   +    P +      +++V     H
Sbjct: 539 AQIIKKE---LQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFV-TWNAMVCGYAQH 594

Query: 516 GRLEVA-EMLAHQLIEAEPENAANYTLLSMVCSESG 550
           G  E A ++  +  +E    N A +  +   C   G
Sbjct: 595 GLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMG 630



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 135/339 (39%), Gaps = 74/339 (21%)

Query: 229 PTRV-TLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPAR 287
           PT+  T + +   C++ + L  GK  H       F     ++  L+ MY +C++ L  A 
Sbjct: 39  PTKKKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSD-LGFAF 97

Query: 288 IIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM-------------RLERIEP--N 332
            +F+    +D V W++++ GY+  GD+  A KLF  M             R+ R+    +
Sbjct: 98  KVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFD 157

Query: 333 SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC----GSITSSH 388
             T   +L SC+       G+ +H   +K G + DV  G+AL++MY+KC      +    
Sbjct: 158 RTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDLRGGL 217

Query: 389 QIFNEMAA--------------------------------------------------RD 398
           ++F EM                                                     +
Sbjct: 218 ELFKEMQKAGVGALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHN 277

Query: 399 FVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFN 458
             S+  +I GY     G EAL +F  +Q+SG+  D +++     AC  A +  + E L  
Sbjct: 278 LQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRAC--AVIKGDLEGLQV 335

Query: 459 NVMKEKKIALA-IEHYACYVDLLGKSGKIEDACKVVSTM 496
           + +  K +  + I      +D+ GK G + +AC V   M
Sbjct: 336 HGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEM 374


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 179/550 (32%), Positives = 304/550 (55%), Gaps = 7/550 (1%)

Query: 29  ILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDE 88
           +L SV+   A  +     G  +H    +S    D  ++ +L++ Y K      A ++FD 
Sbjct: 16  VLNSVVDPDALRK-----GKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDG 70

Query: 89  MPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELG 148
           MP R   +WNS+I+ ++ +     +  +F+ M   G          I+  C     L+ G
Sbjct: 71  MPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDACVNPENLQHG 130

Query: 149 RQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCID 208
           + +    I + SFEL +FV TAL+ +Y++C     A +VF +M  +N ++W+A+I+   D
Sbjct: 131 KHVRE-SISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITWSAIITAFAD 189

Query: 209 SQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHL 268
             +    +  FR MQ+EG+ P RVT   +L        L     IH      G D    +
Sbjct: 190 HGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTM 249

Query: 269 SAALMHMYCEC-TEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
           S AL+++Y  C T  L  A +I +    + +  W+ +I GY+  G   EA++ + R++LE
Sbjct: 250 SNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSREALETYQRLQLE 309

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
            I  + VT +++L++CT  + L+ G  +H   ++ GL+ DV + NAL NMYSKCGS+ ++
Sbjct: 310 AIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENA 369

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHA 447
            +IF+ M  R  VSW  ++  Y  HG  EE L+L  +M++ GV+ + IT +++LS+C+HA
Sbjct: 370 RRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHA 429

Query: 448 GLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSS 507
           GL+ E    F+++  ++ I +  EHY C VDLLG++GK+++A K +S MP +P     +S
Sbjct: 430 GLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPSEPEIVTWAS 489

Query: 508 LVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567
           L+ ACR+H  L+  ++ A +L+E +P N++   +LS + SE G+W  A ++ R M ++ +
Sbjct: 490 LLGACRVHKDLDRGKLAARKLLELDPGNSSASVVLSNIYSERGDWKNAAKLRRAMASRRV 549

Query: 568 SKSYGFSRIE 577
            K  G S I+
Sbjct: 550 KKVPGISSIQ 559



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 162/328 (49%), Gaps = 6/328 (1%)

Query: 225 EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
           EGVK   +T   VL +  +   LR GK IH          D  ++ AL++ Y +C  +L 
Sbjct: 4   EGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCG-SLT 62

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
            AR +F+    + V  W+S+I  YS S    EA  +F RM+ E    + VT L+IL +C 
Sbjct: 63  DARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDACV 122

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
               L HG  V   I +     D+ +G AL+ MY++C S  ++ Q+F  M  ++ ++W+ 
Sbjct: 123 NPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITWSA 182

Query: 405 LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK 464
           +I+ +  HG+  EAL+ F  MQ+ G+ P+ +T +++L+       ++E   + + ++ E 
Sbjct: 183 IITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRI-HLLITEH 241

Query: 465 KIALAIEHYACYVDLLGK--SGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGR-LEVA 521
            +          V++ G+  +G+++ A  ++  M  +  T   + L++   +HGR  E  
Sbjct: 242 GLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQIT-AWNVLINGYTLHGRSREAL 300

Query: 522 EMLAHQLIEAEPENAANYTLLSMVCSES 549
           E      +EA P +   +  +   C+ S
Sbjct: 301 ETYQRLQLEAIPVDKVTFISVLNACTSS 328



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 94/199 (47%), Gaps = 14/199 (7%)

Query: 324 MRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS 383
           M LE ++ N +T L +L+S      L  G  +H  + ++  + DV +  AL+N Y+KCGS
Sbjct: 1   MLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGS 60

Query: 384 ITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
           +T + ++F+ M  R   +W ++IS Y       EA  +F  MQ  G   D +T L+IL A
Sbjct: 61  LTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDA 120

Query: 444 C------NHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
           C       H   V+E+       + E    L +      + +  +    E+A +V   M 
Sbjct: 121 CVNPENLQHGKHVRES-------ISETSFELDLFVGTALITMYARCRSPENAAQVFGRMK 173

Query: 498 MKPSTRILSSLVSACRIHG 516
            K +    S++++A   HG
Sbjct: 174 QK-NLITWSAIITAFADHG 191


>gi|225450537|ref|XP_002277327.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570 [Vitis vinifera]
          Length = 607

 Score =  321 bits (823), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 173/515 (33%), Positives = 290/515 (56%), Gaps = 4/515 (0%)

Query: 64  VISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC 123
           V++ +LI  Y        A  LFDEMP RD ++W  +I  +T    +  +  +F EM   
Sbjct: 44  VLATTLIKSYFGKGLIGEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMVFCEMMNE 103

Query: 124 GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
                A  ++ ++  C  +  L  GR +H L I  G  +  ++V  AL+D+Y+ C   + 
Sbjct: 104 ELDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKHG-LDGFIYVDNALMDMYATCCVSMD 162

Query: 184 -ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
            A  VF  + ++NEVSWT +I+G     +   G+ +FR M  E V+    + +I + AC 
Sbjct: 163 DACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACT 222

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
            +     G+ +H      GF+ +  +  +++ MYC C+      R  +E  + +D++ W+
Sbjct: 223 SIGSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQ-RDLITWN 281

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
           ++I GY +S + +E++ +FS M  E   PN  T  +I+++C   +FL+ G  +H  I++ 
Sbjct: 282 TLIAGYERS-NPTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRR 340

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
           GL+ ++++ NAL++MYSKCG+I  SHQ+F  M+ RD VSWT ++ GYG HGYGEEA++LF
Sbjct: 341 GLDGNLALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELF 400

Query: 423 LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGK 482
            +M  SG+ PD +  +AILSAC+HAGLV E    F  ++ +  I+   E Y C VDLLG+
Sbjct: 401 DKMVRSGIRPDRVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGR 460

Query: 483 SGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLL 542
           +GK+E+A +++ +MP KP   +    + AC+ H    + ++ AH++++  P  A  Y +L
Sbjct: 461 AGKVEEAYELIESMPFKPDECVWGPFLGACKAHTFPNLGKLAAHRILDLRPHMAGTYVML 520

Query: 543 SMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           S + +  G W     + ++M+  G  K  G S +E
Sbjct: 521 SNIYAADGKWGEFARLRKLMKRMGNKKETGRSWVE 555



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 116/421 (27%), Positives = 201/421 (47%), Gaps = 17/421 (4%)

Query: 13  LYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISM 72
           +  +EL P     N   + SV+KAC   +    +G  +H  A+K G D    + N+L+ M
Sbjct: 100 MMNEELDP-----NAFTISSVLKACKGMKCLS-YGRLVHGLAIKHGLDGFIYVDNALMDM 153

Query: 73  YAKFS-KPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAEL 131
           YA      + A  +F  +  ++ +SW ++I  +T        L +FR+M L    L    
Sbjct: 154 YATCCVSMDDACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFS 213

Query: 132 LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM 191
            +  +  C+ IG    G Q+HA V   G FE ++ V  ++LD+Y +C  +  A R F +M
Sbjct: 214 FSIAVRACTSIGSHTFGEQLHAAVTKHG-FESNLPVMNSILDMYCRCSCFSEANRYFYEM 272

Query: 192 VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGK 251
             R+ ++W  +I+G  +  N    + +F  M+ EG  P   T T ++ ACA L  L  G+
Sbjct: 273 NQRDLITWNTLIAG-YERSNPTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQ 331

Query: 252 AIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQS 311
            IHG     G D +  LS AL+ MY +C   +  +  +F     +D+V W++++ GY   
Sbjct: 332 QIHGRIIRRGLDGNLALSNALIDMYSKCGN-IADSHQVFGGMSRRDLVSWTAMMIGYGTH 390

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF--DVS 369
           G   EA++LF +M    I P+ V  +AILS+C+    +  GL  +  +M    N   D  
Sbjct: 391 GYGEEAVELFDKMVRSGIRPDRVVFMAILSACSHAGLVDEGL-RYFKLMVGDYNISPDQE 449

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLIS---GYGFHGYGEEALQLFLEM 425
           I   ++++  + G +  ++++   M  + D   W   +     + F   G+ A    L++
Sbjct: 450 IYGCVVDLLGRAGKVEEAYELIESMPFKPDECVWGPFLGACKAHTFPNLGKLAAHRILDL 509

Query: 426 Q 426
           +
Sbjct: 510 R 510



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 93/199 (46%), Gaps = 3/199 (1%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           ++L+++   +   G   N     S++ ACA      + G Q+H   ++ G D +  +SN+
Sbjct: 294 ESLYVFSM-MESEGFSPNCFTFTSIMAACA-TLAFLNCGQQIHGRIIRRGLDGNLALSNA 351

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           LI MY+K      ++Q+F  M  RD +SW +++  +  +G+   ++E+F +M   G    
Sbjct: 352 LIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSGIRPD 411

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
             +   I+S CS  G ++ G +   L++ D +      +   ++DL  +      A  + 
Sbjct: 412 RVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRAGKVEEAYELI 471

Query: 189 EQMVIR-NEVSWTAMISGC 206
           E M  + +E  W   +  C
Sbjct: 472 ESMPFKPDECVWGPFLGAC 490


>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
 gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
 gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
 gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 857

 Score =  321 bits (823), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 185/553 (33%), Positives = 310/553 (56%), Gaps = 4/553 (0%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           N      V+  CA ++     G+QLH   + SG D +  I NSL+SMY+K  + + A +L
Sbjct: 238 NAVTFDCVLSVCA-SKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKL 296

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL 145
           F  M   DT++WN +I+ + Q+G    SL  F EM   G +  A   + ++   S+   L
Sbjct: 297 FRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENL 356

Query: 146 ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISG 205
           E  +QIH   I+  S  L +F+++AL+D Y KC    +A  +F Q    + V +TAMISG
Sbjct: 357 EYCKQIHCY-IMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISG 415

Query: 206 CIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFD 265
            + +  Y   +++FR + +  + P  +TL  +L     L  L+ G+ +HG+    GFD  
Sbjct: 416 YLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNR 475

Query: 266 HHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR 325
            ++  A++ MY +C   ++ A  IFER   +D+V W+S+I   +QS + S A+ +F +M 
Sbjct: 476 CNIGCAVIDMYAKCGR-MNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMG 534

Query: 326 LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSIT 385
           +  I  + V++ A LS+C      S G  +H +++K  L  DV   + L++MY+KCG++ 
Sbjct: 535 VSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLK 594

Query: 386 SSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE-SGVEPDAITVLAILSAC 444
           ++  +F  M  ++ VSW ++I+  G HG  +++L LF EM E SG+ PD IT L I+S+C
Sbjct: 595 AAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSC 654

Query: 445 NHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRI 504
            H G V E    F ++ ++  I    EHYAC VDL G++G++ +A + V +MP  P   +
Sbjct: 655 CHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGV 714

Query: 505 LSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRA 564
             +L+ ACR+H  +E+AE+ + +L++ +P N+  Y L+S   + +  W    +V  +M+ 
Sbjct: 715 WGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKE 774

Query: 565 KGLSKSYGFSRIE 577
           + + K  G+S IE
Sbjct: 775 REVQKIPGYSWIE 787



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 157/565 (27%), Positives = 285/565 (50%), Gaps = 20/565 (3%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G+  + +  P ++KAC   +  +     L  T    G D +  +++SLI  Y ++ K + 
Sbjct: 133 GVSPDVSTFPCLVKACVALKNFKGIDF-LSDTVSSLGMDCNEFVASSLIKAYLEYGKIDV 191

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
             +LFD +  +D + WN ++N + + G     ++ F  M +      A     ++S+C+ 
Sbjct: 192 PSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCAS 251

Query: 142 IGELELGRQIHALVIVDG-SFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
              ++LG Q+H LV+V G  FE S  +  +LL +YSKC  +  A ++F  M   + V+W 
Sbjct: 252 KLLIDLGVQLHGLVVVSGVDFEGS--IKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWN 309

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
            MISG + S   +  +  F  M   GV P  +T + +L + ++  +L   K IH Y    
Sbjct: 310 CMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRH 369

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
               D  L++AL+  Y +C   +  A+ IF +    DVV+++++I GY  +G   +++++
Sbjct: 370 SISLDIFLTSALIDAYFKC-RGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEM 428

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
           F  +   +I PN +TL++IL        L  G  +H +I+K G +   +IG A+++MY+K
Sbjct: 429 FRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAK 488

Query: 381 CGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
           CG +  +++IF  ++ RD VSW ++I+          A+ +F +M  SG+  D +++ A 
Sbjct: 489 CGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAA 548

Query: 441 LSACNHAGLVKEA-ETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           LSAC  A L  E+     +  M +  +A  +   +  +D+  K G ++ A  V  TM  K
Sbjct: 549 LSAC--ANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEK 606

Query: 500 PSTRILS--SLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV--CSESGNWLGA 555
               I+S  S+++AC  HG+L+ +  L H+++E         T L ++  C   G+    
Sbjct: 607 ---NIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGD---V 660

Query: 556 EEVWRVMRAKGLSKSYGFSRIENEY 580
           +E  R  R+  +++ YG    +  Y
Sbjct: 661 DEGVRFFRS--MTEDYGIQPQQEHY 683



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 104/358 (29%), Positives = 187/358 (52%), Gaps = 14/358 (3%)

Query: 132 LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM 191
           L+ ++  CS    L  G+Q+HA +IV+ S     +    +L +Y+ C  +    ++F ++
Sbjct: 38  LSLLLQACSNPNLLRQGKQVHAFLIVN-SISGDSYTDERILGMYAMCGSFSDCGKMFYRL 96

Query: 192 VIRNEV--SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
            +R      W ++IS  + +   +  +  +  M   GV P   T   ++ AC  L++ + 
Sbjct: 97  DLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKG 156

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
              +       G D +  ++++L+  Y E  +   P+++ F+R   KD VIW+ ++ GY+
Sbjct: 157 IDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKL-FDRVLQKDCVIWNVMLNGYA 215

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
           + G L   +K FS MR+++I PN+VT   +LS C  +  +  G+ +H  ++ +G++F+ S
Sbjct: 216 KCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGS 275

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
           I N+L++MYSKCG    + ++F  M+  D V+W  +ISGY   G  EE+L  F EM  SG
Sbjct: 276 IKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSG 335

Query: 430 VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487
           V PDAIT  ++L + +           F N+   K+I   I  ++  +D+   S  I+
Sbjct: 336 VLPDAITFSSLLPSVSK----------FENLEYCKQIHCYIMRHSISLDIFLTSALID 383



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 101/411 (24%), Positives = 200/411 (48%), Gaps = 5/411 (1%)

Query: 33  VIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYR 92
           +++AC+     +  G Q+H   + +    D      ++ MYA         ++F  +  R
Sbjct: 41  LLQACSNPNLLRQ-GKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLR 99

Query: 93  DTI--SWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQ 150
            +    WNSII+ F +NG   ++L  + +M   G          ++  C  +   + G  
Sbjct: 100 RSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFK-GID 158

Query: 151 IHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQ 210
             +  +     + + FV+++L+  Y +     +  ++F++++ ++ V W  M++G     
Sbjct: 159 FLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCG 218

Query: 211 NYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSA 270
             D+ I  F  M+ + + P  VT   VL  CA    +  G  +HG     G DF+  +  
Sbjct: 219 ALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKN 278

Query: 271 ALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE 330
           +L+ MY +C      A  +F      D V W+ +I GY QSG + E++  F  M    + 
Sbjct: 279 SLLSMYSKCGR-FDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVL 337

Query: 331 PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQI 390
           P+++T  ++L S ++   L +   +HCYIM+  ++ D+ + +AL++ Y KC  ++ +  I
Sbjct: 338 PDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNI 397

Query: 391 FNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
           F++  + D V +T +ISGY  +G   ++L++F  + +  + P+ IT+++IL
Sbjct: 398 FSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSIL 448


>gi|359478617|ref|XP_003632146.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 628

 Score =  321 bits (823), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 182/562 (32%), Positives = 314/562 (55%), Gaps = 4/562 (0%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           +L   G      IL  ++ +CA + +    G+QLH T +K G D++  I ++L+ MY K 
Sbjct: 69  QLQQHGSAPTAHILNRMVSSCAKSGS-VFVGIQLHSTIIKVGFDSNVYICSALVDMYGKC 127

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
               SA +LFDEMP+R+ ++WNS+I+ +   G    ++E+F EM   G       ++ ++
Sbjct: 128 GAVSSAQRLFDEMPHRNVVTWNSLISGYLHVGCPEIAIELFLEMVKVGIDPTPFSVSAVL 187

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
             C ++ + +LG Q+H L +  G F  ++ V T L+DLYSK  +   +  +F+ M  RN 
Sbjct: 188 VGCWRMEDTKLGIQVHGLSMKCG-FCYNIVVGTCLIDLYSKGWNIDASRLMFDLMPERNI 246

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           ++WT+M++G    Q     + L R MQR G++   VT   +L + +   DL + K +H  
Sbjct: 247 ITWTSMVAGYAHCQQPVAAMVLVRDMQRLGIRLNYVTYNCLLSSFSSSNDLDHCKQVHCR 306

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEA-LHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
               G + + +L   L+ +Y EC+ + L     +       D + W+++I G S  G+  
Sbjct: 307 IIREGLESNSYLEVTLVTVYSECSSSSLEDFNKVCSGVTRWDQISWNAVIGGLSNLGNGE 366

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
            A+K FS+MR   I+ +  T  ++L +    S L  G  +H  ++KAG   ++++ N L+
Sbjct: 367 AALKCFSKMRQAGIDMDLFTFTSVLRAIGMISTLDEGKQIHALVLKAGYGSNLNVQNGLV 426

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           +MY++CGSI  + ++F+ M   D +SW +L+SG  +HGYG EA++LF +M+ SGV+PD  
Sbjct: 427 SMYARCGSINDAKRVFSLMDRHDVISWNSLLSGCAYHGYGREAVELFEQMRRSGVKPDNT 486

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKI-ALAIEHYACYVDLLGKSGKIEDACKVVS 494
           T L +LSAC H GL+ +    F+ +  +  + +   EHY+  VDL  ++G + +A   ++
Sbjct: 487 TFLVVLSACRHVGLLDKGLEYFDLMRNDYSLESPTTEHYSSMVDLFSRAGYLSEAEDFIN 546

Query: 495 TMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLG 554
           TMP++P   +  +L+SAC++HG +E+A   A +L++  P +   Y LLS V +  G W  
Sbjct: 547 TMPIEPGPSVYKALLSACQVHGNVEIAVRCAKKLLQMCPNDPVIYVLLSNVQATVGYWDN 606

Query: 555 AEEVWRVMRAKGLSKSYGFSRI 576
              + +VM  +G+ K  G+S I
Sbjct: 607 VASIRKVMCDRGVRKEPGYSWI 628



 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 139/481 (28%), Positives = 245/481 (50%), Gaps = 15/481 (3%)

Query: 90  PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGR 149
           P  D  S NS I C T        L++  ++   G    A +L  ++S C++ G + +G 
Sbjct: 40  PGNDFFSCNSHIACDTDEKQSSVDLKLLAQLQQHGSAPTAHILNRMVSSCAKSGSVFVGI 99

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
           Q+H+ +I  G F+ +V++ +AL+D+Y KC     A R+F++M  RN V+W ++ISG +  
Sbjct: 100 QLHSTIIKVG-FDSNVYICSALVDMYGKCGAVSSAQRLFDEMPHRNVVTWNSLISGYLHV 158

Query: 210 QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS 269
              +  I+LF  M + G+ PT  +++ VL+ C  + D + G  +HG +  CGF ++  + 
Sbjct: 159 GCPEIAIELFLEMVKVGIDPTPFSVSAVLVGCWRMEDTKLGIQVHGLSMKCGFCYNIVVG 218

Query: 270 AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
             L+ +Y +    +  +R++F+    ++++ W+S++ GY+       AM L   M+   I
Sbjct: 219 TCLIDLYSKGWN-IDASRLMFDLMPERNIITWTSMVAGYAHCQQPVAAMVLVRDMQRLGI 277

Query: 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
             N VT   +LSS +  + L H   VHC I++ GL  +  +   L+ +YS+C S  SS +
Sbjct: 278 RLNYVTYNCLLSSFSSSNDLDHCKQVHCRIIREGLESNSYLEVTLVTVYSECSS--SSLE 335

Query: 390 IFNEMAAR----DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
            FN++ +     D +SW  +I G    G GE AL+ F +M+++G++ D  T  ++L A  
Sbjct: 336 DFNKVCSGVTRWDQISWNAVIGGLSNLGNGEAALKCFSKMRQAGIDMDLFTFTSVLRAIG 395

Query: 446 HAGLVKEAETLFNNVMKEKKIA-LAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRI 504
               + E + +   V+K    + L +++    V +  + G I DA +V S M  +     
Sbjct: 396 MISTLDEGKQIHALVLKAGYGSNLNVQNG--LVSMYARCGSINDAKRVFSLMD-RHDVIS 452

Query: 505 LSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLSMVCSESGNWLGAEEVWRVM 562
            +SL+S C  HG    A  L  Q+  +  +P+N     +LS  C   G      E + +M
Sbjct: 453 WNSLLSGCAYHGYGREAVELFEQMRRSGVKPDNTTFLVVLS-ACRHVGLLDKGLEYFDLM 511

Query: 563 R 563
           R
Sbjct: 512 R 512


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  321 bits (823), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 176/536 (32%), Positives = 300/536 (55%), Gaps = 3/536 (0%)

Query: 42  THQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSII 101
           TH+    Q+H   + SG   +  +   L++  +   +   A +LFDE  Y D   WN+II
Sbjct: 67  THKRHLDQIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAII 126

Query: 102 NCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSF 161
             +++N  Y  ++EM+R M   G          ++  C+++ +  L   IH  +I  G F
Sbjct: 127 RSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYG-F 185

Query: 162 ELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRA 221
              VFV   L+ LY+KC H  +A  VF+ +  R  VSWT++ISG   +      + +F  
Sbjct: 186 GSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQ 245

Query: 222 MQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTE 281
           M+  GVKP  + L  +L A  ++ DL  G++IHG+    G + +  L  +L   Y +C  
Sbjct: 246 MRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCG- 304

Query: 282 ALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILS 341
            +  A+  F++ K  +V++W+++I GY+++G   EA+ LF  M    I+P+SVT+ + + 
Sbjct: 305 LVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVL 364

Query: 342 SCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS 401
           +  +   L     +  Y+ K+    D+ +  +L++MY+KCGS+  + ++F+  + +D V 
Sbjct: 365 ASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVM 424

Query: 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVM 461
           W+ +I GYG HG G EA+ L+  M+++GV P+ +T + +L+ACNH+GLVKE   LF + M
Sbjct: 425 WSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKEGWELF-HCM 483

Query: 462 KEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA 521
           K+ +I    EHY+C VDLLG++G + +AC  +  +P++P   +  +L+SAC+I+  + + 
Sbjct: 484 KDFEIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVWGALLSACKIYRCVTLG 543

Query: 522 EMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           E  A++L   +P N  +Y  LS + + S  W     V  +MR KGL+K  G+S IE
Sbjct: 544 EYAANKLFSLDPYNTGHYVQLSNLYASSCLWDCVAHVRVLMREKGLNKDLGYSVIE 599


>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
          Length = 789

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 173/546 (31%), Positives = 301/546 (55%), Gaps = 41/546 (7%)

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           NS+I  Y+K+   + A +LF +MP RDT+SWN++I+  +Q+GF   +L  F EM+  GF 
Sbjct: 184 NSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFR 243

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
             +   A ++S C+ I +LE G  +HA  IV     L V+    L+D+Y+KC     A +
Sbjct: 244 PNSMTYASVLSACTSIYDLEWGAHLHAR-IVRMEPCLDVYAGCGLIDMYAKCGRLESARQ 302

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VF+ +   N VSWT++I G   +   +  + LF  M+   V   + TL  VL  C   +D
Sbjct: 303 VFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKD 362

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           +  G+ +H +    G D    ++ AL+ MY +C + +  A   FE   ++D++ W+++I 
Sbjct: 363 ISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGD-VWKANHAFELMPIRDIISWTAMIT 421

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
            +SQ+GD+ +A + F +M     E N ++  ++L++  ++ +   GL V+  +++ G+  
Sbjct: 422 AFSQAGDVEKAREYFDKMP----ERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKT 477

Query: 367 D-----------------------------------VSIGNALMNMYSKCGSITSSHQIF 391
           D                                   VS+ N+++ MYS+CG I  + ++F
Sbjct: 478 DWITFSTSISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMF 537

Query: 392 NEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVK 451
           + +  ++ VSW  +++GY  +G G + +++F +M   G  PD I+ +++LS C+H+G V 
Sbjct: 538 SSIVMKNLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSVLSGCSHSGFVS 597

Query: 452 EAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSA 511
           E +  F ++ K+  I+   EH+ C VDLLG++G++E A  +++ MP KP+  I  +L++A
Sbjct: 598 EGQYYFLSMTKDHGISPMSEHFVCMVDLLGRAGQLEQAKNLINQMPFKPNAAIWGALLAA 657

Query: 512 CRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSY 571
           CRIHG  ++AE+    L+E + E   +Y LL+ + SESG   G   V ++MR KG+ K+ 
Sbjct: 658 CRIHGNTKLAELAVKNLLELDAEGPGSYCLLANIYSESGKIQGVTNVRKLMRDKGVRKNP 717

Query: 572 GFSRIE 577
           G S IE
Sbjct: 718 GCSWIE 723



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 138/526 (26%), Positives = 231/526 (43%), Gaps = 82/526 (15%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           +LH   +  G  +   + N L++MY+       AY++F  + + +  SWN++I+ F  +G
Sbjct: 25  KLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNVYSWNTMISGFADSG 84

Query: 109 FYVRSLEMFREM----------YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVD 158
               + ++F +M           + G+    EL A  I     +G L+L  Q+H      
Sbjct: 85  QMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEA-TIKASGSLGYLKLALQLHGFA-EK 142

Query: 159 GSFELSVFVSTALLDLYSKCHH------------------W--LI-----------ALRV 187
             F +   V T++LD+Y KC                    W  +I           AL +
Sbjct: 143 FDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSMIYGYSKYGSVKKALEL 202

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F +M  R+ VSW  MIS           ++ F  M  +G +P  +T   VL AC  + DL
Sbjct: 203 FAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMTYASVLSACTSIYDL 262

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
             G  +H          D +    L+ MY +C   L  AR +F+     + V W+S+I G
Sbjct: 263 EWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGR-LESARQVFDGLTEHNAVSWTSLIGG 321

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
            +Q+G   EA+ LF++MR   +  +  TL  +L  C  Q  +S G  +H + +  GL+  
Sbjct: 322 VAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIGEQLHAHTITRGLDSS 381

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG------------------- 408
           V + NAL+ MY+KCG +  ++  F  M  RD +SWT +I+                    
Sbjct: 382 VPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMITAFSQAGDVEKAREYFDKMPE 441

Query: 409 ------------YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETL 456
                       Y   GY EE L+++++M   GV+ D IT    +SAC    ++     L
Sbjct: 442 RNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDWITFSTSISACADLAVL----IL 497

Query: 457 FNNVMKE-KKIALA--IEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
            N ++ + +K+  +  +      V +  + G+IE+A K+ S++ MK
Sbjct: 498 GNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSIVMK 543



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 140/531 (26%), Positives = 237/531 (44%), Gaps = 71/531 (13%)

Query: 1   MVSKH-FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGS 59
           ++S+H F  +TL+ +  E+   G   N+    SV+ AC      + +G  LH   ++   
Sbjct: 220 ILSQHGFGAETLNTF-LEMWNQGFRPNSMTYASVLSACTSIYDLE-WGAHLHARIVRMEP 277

Query: 60  DADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFRE 119
             D      LI MYAK  + ESA Q+FD +   + +SW S+I    Q GF   +L +F +
Sbjct: 278 CLDVYAGCGLIDMYAKCGRLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQ 337

Query: 120 MYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH 179
           M           LA ++ +C    ++ +G Q+HA  I  G  + SV V+ AL+ +Y+KC 
Sbjct: 338 MREVPVASDQFTLATVLGVCLSQKDISIGEQLHAHTITRG-LDSSVPVANALVTMYAKCG 396

Query: 180 HWLIALRVFEQMVIRNEVSWTAMISGCIDSQN---------------------------- 211
               A   FE M IR+ +SWTAMI+    + +                            
Sbjct: 397 DVWKANHAFELMPIRDIISWTAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQ 456

Query: 212 ---YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHL 268
              ++ G+ ++  M REGVK   +T +  + ACA+L  L  G  I   A   GF  +  +
Sbjct: 457 RGYWEEGLKVYIQMLREGVKTDWITFSTSISACADLAVLILGNQILAQAEKLGFSSNVSV 516

Query: 269 SAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER 328
           + +++ MY  C + +  A+ +F    +K++V W++++ GY+Q+G   + +++F +M    
Sbjct: 517 ANSVVTMYSRCGQ-IEEAQKMFSSIVMKNLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIG 575

Query: 329 IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSH 388
             P+ ++ +++LS C+   F+S G     Y +                      S+T  H
Sbjct: 576 NVPDQISYVSVLSGCSHSGFVSEG---QYYFL----------------------SMTKDH 610

Query: 389 QIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG 448
            I     +  FV    L+   G  G  E+A  L  +M     +P+A    A+L+AC   G
Sbjct: 611 GI--SPMSEHFVCMVDLL---GRAGQLEQAKNLINQMP---FKPNAAIWGALLAACRIHG 662

Query: 449 LVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
             K AE    N+++    A     Y    ++  +SGKI+    V   M  K
Sbjct: 663 NTKLAELAVKNLLELD--AEGPGSYCLLANIYSESGKIQGVTNVRKLMRDK 711



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 126/475 (26%), Positives = 215/475 (45%), Gaps = 51/475 (10%)

Query: 139 CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
           C+ +  + + R++HA +I  G  + S+F+   LL++YS C     A RVF  ++  N  S
Sbjct: 14  CASLRSIPIARKLHAQLIFMG-LKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNVYS 72

Query: 199 WTAMISGCIDSQNYDTGIDLFRAM-QREGVKPTRVT--------LTIVLLACAELRDLRN 249
           W  MISG  DS        LF  M +R+ V    +         L   + A   L  L+ 
Sbjct: 73  WNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKASGSLGYLKL 132

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
              +HG+A    F  D  +  +++ MY +C  A+  A+ +F RT    +  W+S+I GYS
Sbjct: 133 ALQLHGFAEKFDFGIDTCVETSVLDMYIKCG-AMDFAQKVFCRTPNPSLFCWNSMIYGYS 191

Query: 310 QSGDLSEAMKLFSRMRLER--------------------------------IEPNSVTLL 337
           + G + +A++LF++M  ER                                  PNS+T  
Sbjct: 192 KYGSVKKALELFAKMP-ERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMTYA 250

Query: 338 AILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR 397
           ++LS+CT    L  G  +H  I++     DV  G  L++MY+KCG + S+ Q+F+ +   
Sbjct: 251 SVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVFDGLTEH 310

Query: 398 DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLF 457
           + VSWT+LI G    G+ EEAL LF +M+E  V  D  T+  +L  C     +   E L 
Sbjct: 311 NAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIGEQLH 370

Query: 458 NNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGR 517
            + +  + +  ++      V +  K G +  A      MP++      +++++A    G 
Sbjct: 371 AHTIT-RGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIIS-WTAMITAFSQAGD 428

Query: 518 LEVAEMLAHQLIEAEPE-NAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSY 571
           +E     A +  +  PE N  ++  +     + G W    +V+  M  +G+   +
Sbjct: 429 VEK----AREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDW 479


>gi|356532944|ref|XP_003535029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 813

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 185/555 (33%), Positives = 311/555 (56%), Gaps = 9/555 (1%)

Query: 26  NTAILPSVIKACAYAQTHQHF--GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAY 83
           N+     ++  CA   T  +F  G QLH   + SG + DP ++N+L++MY+K      A 
Sbjct: 212 NSVTYTCILSICA---TRGNFCAGTQLHGLVIGSGFEFDPQVANTLVAMYSKCGNLLYAR 268

Query: 84  QLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIG 143
           +LF+ MP  DT++WN +I  + QNGF   +  +F  M   G    +   A  +    + G
Sbjct: 269 KLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESG 328

Query: 144 ELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMI 203
            L   +++H+  IV       V++ +AL+D+Y K     +A ++F+Q ++ +    TAMI
Sbjct: 329 SLRHCKEVHSY-IVRHRVPFDVYLKSALIDVYFKGGDVEMARKIFQQNILVDVAVCTAMI 387

Query: 204 SG-CIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGF 262
           SG  +   N D  I+ FR + +EG+    +T+  VL ACA +  L+ GK +H +      
Sbjct: 388 SGYVLHGLNIDA-INTFRWLIQEGMVTNSLTMASVLPACAAVAALKPGKELHCHILKKRL 446

Query: 263 DFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFS 322
           +   ++ +A+  MY +C   L  A   F R   +D V W+S+I  +SQ+G    A+ LF 
Sbjct: 447 ENIVNVGSAITDMYAKCGR-LDLAYEFFRRMSDRDSVCWNSMISSFSQNGKPEIAIDLFR 505

Query: 323 RMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCG 382
           +M +   + +SV+L + LS+      L +G  +H Y+++   + D  + + L++MYSKCG
Sbjct: 506 QMGMSGAKFDSVSLSSALSAAANLPALYYGKEMHGYVIRNAFSSDTFVASTLIDMYSKCG 565

Query: 383 SITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILS 442
           ++  +  +FN M  ++ VSW ++I+ YG HG   E L L+ EM  +G+ PD +T L I+S
Sbjct: 566 NLALAWCVFNLMDGKNEVSWNSIIAAYGNHGCPRECLDLYHEMLRAGIHPDHVTFLVIIS 625

Query: 443 ACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPST 502
           AC HAGLV E    F+ + +E  I   +EHYAC VDL G++G++ +A   + +MP  P  
Sbjct: 626 ACGHAGLVDEGIHYFHCMTREYGIGARMEHYACMVDLYGRAGRVHEAFDTIKSMPFTPDA 685

Query: 503 RILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVM 562
            +  +L+ ACR+HG +E+A++ +  L+E +P+N+  Y LLS V +++G W    +V  +M
Sbjct: 686 GVWGTLLGACRLHGNVELAKLASRHLLELDPKNSGYYVLLSNVHADAGEWASVLKVRSLM 745

Query: 563 RAKGLSKSYGFSRIE 577
           + KG+ K  G+S I+
Sbjct: 746 KEKGVQKIPGYSWID 760



 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 156/542 (28%), Positives = 276/542 (50%), Gaps = 12/542 (2%)

Query: 13  LYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISM 72
           L+  ++  S +  +    P VIKAC     +    + +H TA   G   D    ++LI +
Sbjct: 98  LFYFKMLGSNVSPDKYTFPYVIKACG-GLNNVPLCMVVHDTARSLGFHVDLFAGSALIKL 156

Query: 73  YAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELL 132
           YA       A ++FDE+P RDTI WN ++  + ++G +  ++  F EM     ++ +   
Sbjct: 157 YADNGYIRDARRVFDELPLRDTILWNVMLRGYVKSGDFDNAIGTFCEMRTSYSMVNSVTY 216

Query: 133 AGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV 192
             I+S+C+  G    G Q+H LVI  G FE    V+  L+ +YSKC + L A ++F  M 
Sbjct: 217 TCILSICATRGNFCAGTQLHGLVIGSG-FEFDPQVANTLVAMYSKCGNLLYARKLFNTMP 275

Query: 193 IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKA 252
             + V+W  +I+G + +   D    LF AM   GVKP  VT    L +  E   LR+ K 
Sbjct: 276 QTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKE 335

Query: 253 IHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSG 312
           +H Y       FD +L +AL+ +Y +  + +  AR IF++  + DV + +++I GY   G
Sbjct: 336 VHSYIVRHRVPFDVYLKSALIDVYFKGGD-VEMARKIFQQNILVDVAVCTAMISGYVLHG 394

Query: 313 DLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN 372
              +A+  F  +  E +  NS+T+ ++L +C   + L  G  +HC+I+K  L   V++G+
Sbjct: 395 LNIDAINTFRWLIQEGMVTNSLTMASVLPACAAVAALKPGKELHCHILKKRLENIVNVGS 454

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
           A+ +MY+KCG +  +++ F  M+ RD V W ++IS +  +G  E A+ LF +M  SG + 
Sbjct: 455 AITDMYAKCGRLDLAYEFFRRMSDRDSVCWNSMISSFSQNGKPEIAIDLFRQMGMSGAKF 514

Query: 433 DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDAC 490
           D++++ + LSA  +   +   + +   V++    A + + +  +  +D+  K G +  A 
Sbjct: 515 DSVSLSSALSAAANLPALYYGKEMHGYVIRN---AFSSDTFVASTLIDMYSKCGNLALAW 571

Query: 491 KVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLSMVCSE 548
            V + M  K      +S+++A   HG       L H+++ A   P++     ++S  C  
Sbjct: 572 CVFNLMDGKNEVS-WNSIIAAYGNHGCPRECLDLYHEMLRAGIHPDHVTFLVIIS-ACGH 629

Query: 549 SG 550
           +G
Sbjct: 630 AG 631



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 107/385 (27%), Positives = 192/385 (49%), Gaps = 4/385 (1%)

Query: 132 LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM 191
           L  +   CS    ++  RQ+H  VIV G  ++    S+ +L LY  C  +  A  +F ++
Sbjct: 14  LESLFRACSDASMVQQARQVHTQVIVGGMGDVCA-PSSRVLGLYVLCGRFRDAGNLFFEL 72

Query: 192 VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGK 251
            +R  + W  MI G      +D  +  +  M    V P + T   V+ AC  L ++    
Sbjct: 73  ELRYALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPLCM 132

Query: 252 AIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQS 311
            +H  A   GF  D    +AL+ +Y +    +  AR +F+   ++D ++W+ ++RGY +S
Sbjct: 133 VVHDTARSLGFHVDLFAGSALIKLYAD-NGYIRDARRVFDELPLRDTILWNVMLRGYVKS 191

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
           GD   A+  F  MR      NSVT   ILS C  +     G  +H  ++ +G  FD  + 
Sbjct: 192 GDFDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNFCAGTQLHGLVIGSGFEFDPQVA 251

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
           N L+ MYSKCG++  + ++FN M   D V+W  LI+GY  +G+ +EA  LF  M  +GV+
Sbjct: 252 NTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVK 311

Query: 432 PDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACK 491
           PD++T  + L +   +G ++  + + + +++  ++   +   +  +D+  K G +E A K
Sbjct: 312 PDSVTFASFLPSILESGSLRHCKEVHSYIVRH-RVPFDVYLKSALIDVYFKGGDVEMARK 370

Query: 492 VVSTMPMKPSTRILSSLVSACRIHG 516
           +     +     + ++++S   +HG
Sbjct: 371 IFQQNILV-DVAVCTAMISGYVLHG 394



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/246 (18%), Positives = 101/246 (41%), Gaps = 7/246 (2%)

Query: 325 RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSI 384
           + E ++  +  L ++  +C+  S +     VH  ++  G+    +  + ++ +Y  CG  
Sbjct: 3   KPETLDSLTTQLESLFRACSDASMVQQARQVHTQVIVGGMGDVCAPSSRVLGLYVLCGRF 62

Query: 385 TSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
             +  +F E+  R  + W  +I G    G+ + AL  + +M  S V PD  T   ++ AC
Sbjct: 63  RDAGNLFFELELRYALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKAC 122

Query: 445 NHAGLVKEAETLFNNVMKEKKIALAIEHYA--CYVDLLGKSGKIEDACKVVSTMPMKPST 502
                V     + +     + +   ++ +A    + L   +G I DA +V   +P++  T
Sbjct: 123 GGLNNVPLCMVVHDTA---RSLGFHVDLFAGSALIKLYADNGYIRDARRVFDELPLR-DT 178

Query: 503 RILSSLVSACRIHGRLEVA-EMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRV 561
            + + ++      G  + A              N+  YT +  +C+  GN+    ++  +
Sbjct: 179 ILWNVMLRGYVKSGDFDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNFCAGTQLHGL 238

Query: 562 MRAKGL 567
           +   G 
Sbjct: 239 VIGSGF 244


>gi|449450916|ref|XP_004143208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 616

 Score =  321 bits (823), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 179/555 (32%), Positives = 303/555 (54%), Gaps = 5/555 (0%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G      IL   I  C    T   FG+Q+H T +K G   +P I  +L+ MY K      
Sbjct: 63  GSPPTPPILTKTISICT-KSTLLDFGIQVHSTIIKLGFSLNPYIFTALVDMYGKCWSISD 121

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A+++FDEM     ++WNS++  + Q G+ + ++ +F EM   G       L+G +  CSQ
Sbjct: 122 AHKVFDEMSCPSVVTWNSLVTGYLQAGYPLMAVSLFLEMLKKGIEPTPFSLSGGLVGCSQ 181

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
           + + +LG Q+HA+ +    F  +V V T L+D+YSKC +   + RVF+ M+ +N  +WT+
Sbjct: 182 LQKGDLGSQLHAMSL-KLRFSSNVVVGTGLIDMYSKCCNLQDSRRVFDIMLNKNVFTWTS 240

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           MISG   +Q     + L R M    +KP  +T   +L + +  R     K IH      G
Sbjct: 241 MISGYARNQLPHEAMILMREMLHLNLKPNGMTYNSLLSSFSCPRHFDKCKQIHCRIITEG 300

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
           ++ +++++  L+  Y EC  +L   R +    ++ D + W+++I G++  G   EA++ F
Sbjct: 301 YESNNYIAVTLVTAYSECCGSLEDYRKVCSNIRMSDQISWNAVIAGFTNLGIGEEALECF 360

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
            +MR E+ + +  T  +I  +    S L  G  +H  + K G   ++S+ N L++MY++ 
Sbjct: 361 IQMRREKFDVDFFTFTSIFKAIGMTSALEEGKQIHGLVYKTGYTLNLSVQNGLVSMYARS 420

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
           G+I  S  +F+ M   D +SW +L+SG  +HG GEEA+ LF +M+ + ++PD  + LA+L
Sbjct: 421 GAIRDSKMVFSMMNEHDLISWNSLLSGCAYHGCGEEAIDLFEKMRRTCIKPDNTSFLAVL 480

Query: 442 SACNHAGLVKEAETLFNNVMKEKKI--ALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           +AC+H GL+ +    F  +M+  ++     +EHYA  VDL G++GK+ +A   + ++P++
Sbjct: 481 TACSHVGLLDKGLEYF-KLMRNSELVEPPKLEHYATLVDLFGRAGKLYEAEAFIESIPIE 539

Query: 500 PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVW 559
           P   I  +L+SAC IHG  ++A   A +L+E  P + A Y +LS      G W  A  + 
Sbjct: 540 PGISIYKALLSACLIHGNKDIAIRTAKKLLELYPYDPATYIMLSNALGRDGYWDDAASIR 599

Query: 560 RVMRAKGLSKSYGFS 574
           R+M  +G+ K  GFS
Sbjct: 600 RLMSNRGVKKEPGFS 614



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 115/228 (50%), Gaps = 1/228 (0%)

Query: 216 IDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHM 275
           I     + R G  PT   LT  +  C +   L  G  +H      GF  + ++  AL+ M
Sbjct: 53  IQFLVQLLRHGSPPTPPILTKTISICTKSTLLDFGIQVHSTIIKLGFSLNPYIFTALVDM 112

Query: 276 YCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVT 335
           Y +C  ++  A  +F+      VV W+S++ GY Q+G    A+ LF  M  + IEP   +
Sbjct: 113 YGKCW-SISDAHKVFDEMSCPSVVTWNSLVTGYLQAGYPLMAVSLFLEMLKKGIEPTPFS 171

Query: 336 LLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA 395
           L   L  C++      G  +H   +K   + +V +G  L++MYSKC ++  S ++F+ M 
Sbjct: 172 LSGGLVGCSQLQKGDLGSQLHAMSLKLRFSSNVVVGTGLIDMYSKCCNLQDSRRVFDIML 231

Query: 396 ARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
            ++  +WT++ISGY  +    EA+ L  EM    ++P+ +T  ++LS+
Sbjct: 232 NKNVFTWTSMISGYARNQLPHEAMILMREMLHLNLKPNGMTYNSLLSS 279


>gi|326494876|dbj|BAJ94557.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 783

 Score =  321 bits (823), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 177/553 (32%), Positives = 302/553 (54%), Gaps = 3/553 (0%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G+  +  +L S   AC+        G Q+H  A ++ +++D  + N+LI +Y K S+   
Sbjct: 233 GVRPDRFVLASAASACS-GLGFVEGGRQIHGYAYRTAAESDASVVNALIDLYCKCSRLLL 291

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A +LFD M  R+ +SW ++I  + QN     ++ MF ++   G+         I++ C  
Sbjct: 292 ARRLFDSMENRNLVSWTTMIAGYMQNSLDTEAMSMFWQLSQAGWQPDVFACTSILNSCGS 351

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
           +  +  GRQ+HA VI     E   +V  AL+D+Y+KC H   A  VFE +   + +S+ A
Sbjct: 352 LAAIWQGRQVHAHVI-KADLESDEYVKNALIDMYAKCEHLTEARAVFEALAEDDAISYNA 410

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           MI G     +    +++F  M+   +KP+ +T   +L   +   DL   K IHG     G
Sbjct: 411 MIEGYARLGDLTGAVEIFGKMRYCSLKPSLLTFVSLLGVSSSRSDLELSKQIHGLIVKSG 470

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
              D +  +AL+ +Y + +  +  A+++F   + +D+VIW+++I G +Q+    EA+KLF
Sbjct: 471 TSLDLYAGSALIDVYSKFS-LVDDAKLVFSLMQNRDMVIWNAMIFGLAQNERGEEAVKLF 529

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
           +R+R+  + PN  T +A+++  +  + + HG   H  I+KAG + D  I NAL++MY+KC
Sbjct: 530 ARLRVSGLTPNEFTFVALVTVASTLASIFHGQQFHAQIIKAGADSDPHISNALIDMYAKC 589

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
           G I     +F     +D + W ++IS Y  HG+ EEAL +F  M+ +GVEP+ +T +++L
Sbjct: 590 GFIEEGRLLFESTLGKDVICWNSMISTYAQHGHAEEALHVFGMMEGAGVEPNYVTFVSVL 649

Query: 442 SACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPS 501
           SAC HAGLV E    FN++  +  +    EHYA  V+L G+SGK+  A + +  MP++P 
Sbjct: 650 SACAHAGLVDEGLHHFNSMKTKYAVEPGTEHYASVVNLFGRSGKLHAAKEFIERMPIEPV 709

Query: 502 TRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRV 561
             I  SL+SAC + G +E+        + A+P ++    L+S + +  G W  A+++ + 
Sbjct: 710 ATIWRSLLSACHLFGNVEIGRYATEMALLADPADSGPSVLMSNIYASKGLWADAQKLRQG 769

Query: 562 MRAKGLSKSYGFS 574
           M   G+ K  G+S
Sbjct: 770 MDCAGVVKEPGYS 782



 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 152/503 (30%), Positives = 270/503 (53%), Gaps = 7/503 (1%)

Query: 20  PSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKP 79
           P G   N  +L S ++ACA ++  + FG Q+H  A K G DA+  +  +L+++YAK  + 
Sbjct: 130 PDGEPPNEFLLASALRACAQSRAAR-FGEQVHGVAAKLGLDANVFVGTALVNLYAKAGRI 188

Query: 80  ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLC 139
           ++A  +FD +P R+ ++W ++I  ++Q G    +LE+F  M L G      +LA   S C
Sbjct: 189 DAAMSVFDALPARNPVTWTAVITGYSQAGQAGVALELFGRMGLDGVRPDRFVLASAASAC 248

Query: 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSW 199
           S +G +E GRQIH       + E    V  AL+DLY KC   L+A R+F+ M  RN VSW
Sbjct: 249 SGLGFVEGGRQIHGYAYRTAA-ESDASVVNALIDLYCKCSRLLLARRLFDSMENRNLVSW 307

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
           T MI+G + +      + +F  + + G +P     T +L +C  L  +  G+ +H +   
Sbjct: 308 TTMIAGYMQNSLDTEAMSMFWQLSQAGWQPDVFACTSILNSCGSLAAIWQGRQVHAHVIK 367

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
              + D ++  AL+ MY +C E L  AR +FE     D + ++++I GY++ GDL+ A++
Sbjct: 368 ADLESDEYVKNALIDMYAKC-EHLTEARAVFEALAEDDAISYNAMIEGYARLGDLTGAVE 426

Query: 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           +F +MR   ++P+ +T +++L   + +S L     +H  I+K+G + D+  G+AL+++YS
Sbjct: 427 IFGKMRYCSLKPSLLTFVSLLGVSSSRSDLELSKQIHGLIVKSGTSLDLYAGSALIDVYS 486

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           K   +  +  +F+ M  RD V W  +I G   +  GEEA++LF  ++ SG+ P+  T +A
Sbjct: 487 KFSLVDDAKLVFSLMQNRDMVIWNAMIFGLAQNERGEEAVKLFARLRVSGLTPNEFTFVA 546

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYA-CYVDLLGKSGKIEDACKVVSTMPM 498
           +++  +    +   +     ++K    A +  H +   +D+  K G IE+  +++    +
Sbjct: 547 LVTVASTLASIFHGQQFHAQIIKAG--ADSDPHISNALIDMYAKCGFIEEG-RLLFESTL 603

Query: 499 KPSTRILSSLVSACRIHGRLEVA 521
                  +S++S    HG  E A
Sbjct: 604 GKDVICWNSMISTYAQHGHAEEA 626



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/452 (29%), Positives = 238/452 (52%), Gaps = 9/452 (1%)

Query: 51  HCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFY 110
           H  A+ SG   D  ++N L+  Y+K  +   A +LFD MP R+ +SW S I+ + Q+G  
Sbjct: 53  HARAVVSGLLPDLFLANLLLRGYSKLGRLGDARRLFDSMPSRNLVSWGSAISMYAQHGRE 112

Query: 111 VRSLEMFREMYLCGFVLKAE------LLAGIISLCSQIGELELGRQIHALVIVDGSFELS 164
             +L +F      G            LLA  +  C+Q      G Q+H +    G  + +
Sbjct: 113 DDALLLFAAFPSAGAASPDGEPPNEFLLASALRACAQSRAARFGEQVHGVAAKLG-LDAN 171

Query: 165 VFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR 224
           VFV TAL++LY+K      A+ VF+ +  RN V+WTA+I+G   +      ++LF  M  
Sbjct: 172 VFVGTALVNLYAKAGRIDAAMSVFDALPARNPVTWTAVITGYSQAGQAGVALELFGRMGL 231

Query: 225 EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
           +GV+P R  L     AC+ L  +  G+ IHGYAY    + D  +  AL+ +YC+C+  L 
Sbjct: 232 DGVRPDRFVLASAASACSGLGFVEGGRQIHGYAYRTAAESDASVVNALIDLYCKCSRLLL 291

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
            AR +F+  + +++V W+++I GY Q+   +EAM +F ++     +P+     +IL+SC 
Sbjct: 292 -ARRLFDSMENRNLVSWTTMIAGYMQNSLDTEAMSMFWQLSQAGWQPDVFACTSILNSCG 350

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
             + +  G  VH +++KA L  D  + NAL++MY+KC  +T +  +F  +A  D +S+  
Sbjct: 351 SLAAIWQGRQVHAHVIKADLESDEYVKNALIDMYAKCEHLTEARAVFEALAEDDAISYNA 410

Query: 405 LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK 464
           +I GY   G    A+++F +M+   ++P  +T +++L   +    ++ ++ +   ++K  
Sbjct: 411 MIEGYARLGDLTGAVEIFGKMRYCSLKPSLLTFVSLLGVSSSRSDLELSKQIHGLIVK-S 469

Query: 465 KIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
             +L +   +  +D+  K   ++DA  V S M
Sbjct: 470 GTSLDLYAGSALIDVYSKFSLVDDAKLVFSLM 501


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  321 bits (822), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 179/605 (29%), Positives = 312/605 (51%), Gaps = 67/605 (11%)

Query: 38  AYAQTHQHFGLQLHCTALKSGSDADPV-ISNSLISMYAKFSKPESAYQLFDEMPY----- 91
           A A+T  H    LHC  L++     P  + N L++ Y K  +   A ++FD MP+     
Sbjct: 15  AAARTEPHVAGALHCVILRTLPHPPPTYLLNHLLTAYGKAGRHARARRVFDAMPHPNLFT 74

Query: 92  --------------------------RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
                                     RD +S+N++I  F+  G + +++ ++  +     
Sbjct: 75  YNALLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADS 134

Query: 126 VLKAE--LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSK------ 177
            ++     ++ ++   S +G+  LG+Q H  ++  G F  + FV + L+D+Y+K      
Sbjct: 135 SVRPSRITMSTMVMAASALGDRALGKQFHCQILRLG-FGANAFVGSPLVDMYAKMSLVGD 193

Query: 178 -------------------------CHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNY 212
                                    C     A R+FE M  R+ ++WT M++G   +   
Sbjct: 194 AKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLE 253

Query: 213 DTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAAL 272
              +++FR M+ +G+   + T   +L AC  L  L  GK IH Y     +D +  + +AL
Sbjct: 254 SEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSAL 313

Query: 273 MHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPN 332
           + MY +C  ++  A  +F R   K+++ W+++I GY Q+G   EA+++FS M+ + I+P+
Sbjct: 314 VDMYSKC-RSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPD 372

Query: 333 SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFN 392
             TL +++SSC   + L  G   HC  + +GL   +++ NAL+ +Y KCGSI  +H++F+
Sbjct: 373 DYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFD 432

Query: 393 EMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKE 452
           EM+  D VSWT L+SGY   G  +E + LF +M   GV+PD +T + +LSAC+ AG V++
Sbjct: 433 EMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEK 492

Query: 453 AETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSAC 512
             + F+++ K+  I    +HY C +DL  +SGK+++A + +  MPM P      +L+SAC
Sbjct: 493 GRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSAC 552

Query: 513 RIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYG 572
           R+ G +E+ +  A  L+E +P+N A+Y LL  + +  G W    ++ R MR + + K  G
Sbjct: 553 RLRGDMEIGKWAAENLLEIDPQNPASYVLLCSMHAAKGQWNEVAQLRRGMRDRQVKKEPG 612

Query: 573 FSRIE 577
            S I+
Sbjct: 613 CSWIK 617



 Score =  205 bits (521), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 133/459 (28%), Positives = 218/459 (47%), Gaps = 44/459 (9%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           + Q + +Y   L        + I  S +   A A   +  G Q HC  L+ G  A+  + 
Sbjct: 119 HAQAVRVYLALLQADSSVRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVG 178

Query: 67  NSLISMYAKFS-------------------------------KPESAYQLFDEMPYRDTI 95
           + L+ MYAK S                                 E A +LF+ M  RD+I
Sbjct: 179 SPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSI 238

Query: 96  SWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALV 155
           +W +++  FTQNG    +LE+FR M   G  +       I++ C  +  LE G+QIHA  
Sbjct: 239 TWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAY- 297

Query: 156 IVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTG 215
           I+   ++ +VFV +AL+D+YSKC    +A  VF +M  +N +SWTA+I G   +   +  
Sbjct: 298 IIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEA 357

Query: 216 IDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHM 275
           + +F  MQR+G+ P   TL  V+ +CA L  L  G   H  A   G      +S AL+ +
Sbjct: 358 VRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTL 417

Query: 276 YCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVT 335
           Y +C  ++  A  +F+     D V W++++ GY+Q G   E + LF +M  + ++P+ VT
Sbjct: 418 YGKCG-SIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVT 476

Query: 336 LLAILSSCTRQSFLSHGLG-VHCYIMKAGLNFDVSIGN---ALMNMYSKCGSITSSHQIF 391
            + +LS+C+R  F+  G    H      G+   V I +    ++++YS+ G +  + +  
Sbjct: 477 FIGVLSACSRAGFVEKGRSYFHSMQKDHGI---VPIDDHYTCMIDLYSRSGKLKEAEEFI 533

Query: 392 NEMAAR-DFVSWTTLISGYGFHG---YGEEALQLFLEMQ 426
            +M    D + W TL+S     G    G+ A +  LE+ 
Sbjct: 534 KQMPMHPDAIGWGTLLSACRLRGDMEIGKWAAENLLEID 572


>gi|225450928|ref|XP_002280725.1| PREDICTED: pentatricopeptide repeat-containing protein At3g05340
           [Vitis vinifera]
          Length = 656

 Score =  321 bits (822), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 190/552 (34%), Positives = 301/552 (54%), Gaps = 17/552 (3%)

Query: 41  QTHQHFGLQLHCTALKS-----GSDADP-----VISNSLISMYAKFSKPESAYQLFDEMP 90
           + + H G  LH + +K+     G++ D      V+ NSL+SMY++  +   A ++FD MP
Sbjct: 57  EGYLHLGSSLHASIIKNFGFLDGNNRDNLRNVIVVWNSLLSMYSRCGELRDATKVFDHMP 116

Query: 91  YRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG-FVLKAELLAGIISLCSQIGELELGR 149
            +DTISWNS I+    NG       +F+++Y  G +      L  +++ C +     + +
Sbjct: 117 MKDTISWNSRISGLLGNGDIEMGFRVFKQLYESGIYQFDQATLTTVLTACDKPEFCYVSK 176

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
            IH+LV + G +E  + V  AL+  Y +C       RVF++M  +N V+WTA+ISG    
Sbjct: 177 MIHSLVFLYG-YEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVISGLSQG 235

Query: 210 QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS 269
           Q Y+  + LF  M+   V P  +T    L+AC+ L+ +R G+ IHG  +  G  FD  + 
Sbjct: 236 QFYEESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQAIREGRQIHGLVWKLGVHFDLCIE 295

Query: 270 AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER- 328
           +ALM MY +C  +L  A  IFE  +  D V  + I+ G +Q+G   E++++F +M     
Sbjct: 296 SALMDMYSKCG-SLEDAWKIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNGV 354

Query: 329 -IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
            I+PN ++  AIL      + L+ G  +H  I+K     +  + N L+NMYSKCG +  S
Sbjct: 355 VIDPNMIS--AILGVFGIDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCGDLDDS 412

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHA 447
            +IF  M  R+ VSW ++I+ +  HG G  ALQL+ EM+  GV P  +T L++L AC H 
Sbjct: 413 IKIFCWMPQRNSVSWNSMIAAFARHGNGSRALQLYEEMRLEGVWPTDVTFLSLLHACAHV 472

Query: 448 GLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSS 507
           GLV++      ++ K+  I   +EHYAC VD++G++G + +A K +  +P KP   +  +
Sbjct: 473 GLVEKGMGFLESMAKDYGIGPRMEHYACVVDMMGRAGLLNEAKKFIERLPEKPGILVWQA 532

Query: 508 LVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567
           L+ AC IHG  E+ +  A+QL    PE+ A Y LL+ + S  G W       + M+  G+
Sbjct: 533 LLGACSIHGNSEMGKYAANQLFLQAPESPAPYILLANIYSSEGKWKERARTIKKMKDMGV 592

Query: 568 SKSYGFSRIENE 579
           +K  G S IE E
Sbjct: 593 TKETGISWIEIE 604


>gi|356528513|ref|XP_003532847.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Glycine max]
          Length = 651

 Score =  321 bits (822), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 187/579 (32%), Positives = 319/579 (55%), Gaps = 6/579 (1%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           +V++   +  L L++Q +  SG+  N +  P V+KACA   +H      +H   LKS   
Sbjct: 28  LVNQGHAQNALILFRQ-MKQSGITPNNSTFPFVLKACA-KLSHLRNSQIIHAHVLKSCFQ 85

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
           ++  +  + + MY K  + E A+ +F EMP RD  SWN+++  F Q+GF  R   + R M
Sbjct: 86  SNIFVQTATVDMYVKCGRLEDAHNVFVEMPVRDIASWNAMLLGFAQSGFLDRLSCLLRHM 145

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
            L G    A  +  +I    ++  L     +++  I  G   + V V+  L+  YSKC +
Sbjct: 146 RLSGIRPDAVTVLLLIDSILRVKSLTSLGAVYSFGIRIG-VHMDVSVANTLIAAYSKCGN 204

Query: 181 WLIALRVFEQMV--IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVL 238
              A  +F+++   +R+ VSW +MI+   + + +   ++ ++ M   G  P   T+  +L
Sbjct: 205 LCSAETLFDEINSGLRSVVSWNSMIAAYANFEKHVKAVNCYKGMLDGGFSPDISTILNLL 264

Query: 239 LACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDV 298
            +C + + L +G  +H +    G D D  +   L+ MY +C + +H AR +F     K  
Sbjct: 265 SSCMQPKALFHGLLVHSHGVKLGCDSDVCVVNTLICMYSKCGD-VHSARFLFNGMSDKTC 323

Query: 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCY 358
           V W+ +I  Y++ G +SEAM LF+ M     +P+ VT+LA++S C +   L  G  +  Y
Sbjct: 324 VSWTVMISAYAEKGYMSEAMTLFNAMEAAGEKPDLVTVLALISGCGQTGALELGKWIDNY 383

Query: 359 IMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEA 418
            +  GL  +V + NAL++MY+KCG    + ++F  MA R  VSWTT+I+    +G  ++A
Sbjct: 384 SINNGLKDNVVVCNALIDMYAKCGGFNDAKELFYTMANRTVVSWTTMITACALNGDVKDA 443

Query: 419 LQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVD 478
           L+LF  M E G++P+ IT LA+L AC H GLV+     FN + ++  I   I+HY+C VD
Sbjct: 444 LELFFMMLEMGMKPNHITFLAVLQACAHGGLVERGLECFNMMTQKYGINPGIDHYSCMVD 503

Query: 479 LLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAAN 538
           LLG+ G + +A +++ +MP +P + I S+L+SAC++HG++E+ + ++ QL E EP+ A  
Sbjct: 504 LLGRKGHLREALEIIKSMPFEPDSGIWSALLSACKLHGKMEMGKYVSEQLFELEPQVAVP 563

Query: 539 YTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           Y  ++ + + +  W G   + R M+   + KS G S I+
Sbjct: 564 YVEMANIYASAEMWEGVAAIRRNMKYLQVRKSPGQSIIQ 602



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 130/446 (29%), Positives = 225/446 (50%), Gaps = 14/446 (3%)

Query: 91  YRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQ 150
           +    +WNS        G    +L +FR+M   G          ++  C+++  L   + 
Sbjct: 15  FSTLFTWNSNFRHLVNQGHAQNALILFRQMKQSGITPNNSTFPFVLKACAKLSHLRNSQI 74

Query: 151 IHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQ 210
           IHA V+    F+ ++FV TA +D+Y KC     A  VF +M +R+  SW AM+ G   S 
Sbjct: 75  IHAHVL-KSCFQSNIFVQTATVDMYVKCGRLEDAHNVFVEMPVRDIASWNAMLLGFAQSG 133

Query: 211 NYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSA 270
             D    L R M+  G++P  VT+ +++ +   ++ L +  A++ +    G   D  ++ 
Sbjct: 134 FLDRLSCLLRHMRLSGIRPDAVTVLLLIDSILRVKSLTSLGAVYSFGIRIGVHMDVSVAN 193

Query: 271 ALMHMYCECTEALHPARIIFE--RTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER 328
            L+  Y +C   L  A  +F+   + ++ VV W+S+I  Y+      +A+  +  M    
Sbjct: 194 TLIAAYSKCGN-LCSAETLFDEINSGLRSVVSWNSMIAAYANFEKHVKAVNCYKGMLDGG 252

Query: 329 IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSH 388
             P+  T+L +LSSC +   L HGL VH + +K G + DV + N L+ MYSKCG + S+ 
Sbjct: 253 FSPDISTILNLLSSCMQPKALFHGLLVHSHGVKLGCDSDVCVVNTLICMYSKCGDVHSAR 312

Query: 389 QIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG 448
            +FN M+ +  VSWT +IS Y   GY  EA+ LF  M+ +G +PD +TVLA++S C   G
Sbjct: 313 FLFNGMSDKTCVSWTVMISAYAEKGYMSEAMTLFNAMEAAGEKPDLVTVLALISGCGQTG 372

Query: 449 LVKEAETL----FNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRI 504
            ++  + +     NN +K+  +          +D+  K G   DA ++  TM  +     
Sbjct: 373 ALELGKWIDNYSINNGLKDNVVVC-----NALIDMYAKCGGFNDAKELFYTMANRTVVS- 426

Query: 505 LSSLVSACRIHGRLEVAEMLAHQLIE 530
            +++++AC ++G ++ A  L   ++E
Sbjct: 427 WTTMITACALNGDVKDALELFFMMLE 452



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/362 (27%), Positives = 179/362 (49%), Gaps = 18/362 (4%)

Query: 198 SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
           +W +     ++  +    + LFR M++ G+ P   T   VL ACA+L  LRN + IH + 
Sbjct: 20  TWNSNFRHLVNQGHAQNALILFRQMKQSGITPNNSTFPFVLKACAKLSHLRNSQIIHAHV 79

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
               F  +  +  A + MY +C   L  A  +F    V+D+  W++++ G++QSG L   
Sbjct: 80  LKSCFQSNIFVQTATVDMYVKCGR-LEDAHNVFVEMPVRDIASWNAMLLGFAQSGFLDRL 138

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
             L   MRL  I P++VT+L ++ S  R   L+    V+ + ++ G++ DVS+ N L+  
Sbjct: 139 SCLLRHMRLSGIRPDAVTVLLLIDSILRVKSLTSLGAVYSFGIRIGVHMDVSVANTLIAA 198

Query: 378 YSKCGSITSSHQIFNEMAA--RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           YSKCG++ S+  +F+E+ +  R  VSW ++I+ Y       +A+  +  M + G  PD  
Sbjct: 199 YSKCGNLCSAETLFDEINSGLRSVVSWNSMIAAYANFEKHVKAVNCYKGMLDGGFSPDIS 258

Query: 436 TVLAILSACNHAGLVKEAETLFNNVM-KEKKIALAIEHYACYVDLL----GKSGKIEDAC 490
           T+L +LS+C       + + LF+ ++     + L  +   C V+ L     K G +  A 
Sbjct: 259 TILNLLSSC------MQPKALFHGLLVHSHGVKLGCDSDVCVVNTLICMYSKCGDVHSAR 312

Query: 491 KVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV--CSE 548
            + + M  K      + ++SA    G +  A M     +EA  E     T+L+++  C +
Sbjct: 313 FLFNGMSDKTCVS-WTVMISAYAEKGYMSEA-MTLFNAMEAAGEKPDLVTVLALISGCGQ 370

Query: 549 SG 550
           +G
Sbjct: 371 TG 372



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 84/168 (50%), Gaps = 9/168 (5%)

Query: 276 YCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVT 335
           YC  T  ++    +F          W+S  R     G    A+ LF +M+   I PN+ T
Sbjct: 5   YCGVTPCINRFSTLFT---------WNSNFRHLVNQGHAQNALILFRQMKQSGITPNNST 55

Query: 336 LLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA 395
              +L +C + S L +   +H +++K+    ++ +  A ++MY KCG +  +H +F EM 
Sbjct: 56  FPFVLKACAKLSHLRNSQIIHAHVLKSCFQSNIFVQTATVDMYVKCGRLEDAHNVFVEMP 115

Query: 396 ARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
            RD  SW  ++ G+   G+ +    L   M+ SG+ PDA+TVL ++ +
Sbjct: 116 VRDIASWNAMLLGFAQSGFLDRLSCLLRHMRLSGIRPDAVTVLLLIDS 163


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  321 bits (822), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 187/528 (35%), Positives = 299/528 (56%), Gaps = 8/528 (1%)

Query: 54  ALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRS 113
           A +  SD +    N++I+ YAK S+P  A+QLFD++P  D +S+N++I+ +   G    +
Sbjct: 65  AFQDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPA 124

Query: 114 LEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLD 173
           L +F  M   G  +    L+ +I+ C    ++ L  Q+H++ +  G F+  V V+ ALL 
Sbjct: 125 LGLFSGMREMGLDMDGFTLSAVITACCD--DVGLIGQLHSVAVSSG-FDSYVSVNNALLT 181

Query: 174 LYSKCHHWLIALRVFEQMV-IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRV 232
            Y K      A RVF  M  IR+EVSW +MI      Q     + LF+ M R G+     
Sbjct: 182 YYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMF 241

Query: 233 TLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFER 292
           TL  VL A   L DL  G   HG     GF  + H+ + L+ +Y +C   +   R +FE 
Sbjct: 242 TLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEE 301

Query: 293 TKVKDVVIWSSIIRGYSQSGD-LSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSH 351
               D+V+W++++ GYSQ+ + L +A++ F +M+     PN  + + ++S+C+  S  S 
Sbjct: 302 ITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQ 361

Query: 352 GLGVHCYIMKAGLNFD-VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYG 410
           G  +H   +K+ +  + +S+ NAL+ MYSKCG++  + ++F+ MA  + VS  ++I+GY 
Sbjct: 362 GKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYA 421

Query: 411 FHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK-KIALA 469
            HG   E+L LF  M E  + P +IT +++LSAC H G V+E    FN +MKEK  I   
Sbjct: 422 QHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFN-MMKEKFNIEPE 480

Query: 470 IEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLI 529
            EHY+C +DLLG++GK+ +A  +++ MP  P +   +SL+ ACR HG +E+A   A+Q++
Sbjct: 481 AEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVL 540

Query: 530 EAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           + EP NAA Y +LS + + +G W     V + MR +G+ K  G S IE
Sbjct: 541 QLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIE 588



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 120/423 (28%), Positives = 205/423 (48%), Gaps = 20/423 (4%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGL--QLHCTALKSGSDADPVISNSLISMYAKFSKP 79
           GL  +   L +VI AC         GL  QLH  A+ SG D+   ++N+L++ Y K    
Sbjct: 135 GLDMDGFTLSAVITACC-----DDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDL 189

Query: 80  ESAYQLFDEM-PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISL 138
           + A ++F  M   RD +SWNS+I  + Q+    ++L +F+EM   G  +    LA +++ 
Sbjct: 190 DDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTA 249

Query: 139 CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR-VFEQMVIRNEV 197
            + + +L  G Q H  +I  G F  +  V + L+DLYSKC   +   R VFE++   + V
Sbjct: 250 FTCLEDLSGGLQFHGQLIKTG-FHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLV 308

Query: 198 SWTAMISGCIDSQNY-DTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
            W  M+SG   ++ + +  ++ FR MQ  G +P   +   V+ AC+ L     GK IH  
Sbjct: 309 LWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSL 368

Query: 257 AYCCGFDFDH-HLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
           A       +   +  AL+ MY +C   L  AR +F+R    + V  +S+I GY+Q G   
Sbjct: 369 ALKSDIPSNRISVDNALIAMYSKCGN-LQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEM 427

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG--NA 373
           E++ LF  M   +I P S+T +++LS+C     +  G   +  +MK   N +      + 
Sbjct: 428 ESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWN-YFNMMKEKFNIEPEAEHYSC 486

Query: 374 LMNMYSKCGSITSSHQIFNEMAARD-FVSWTTLISGYGFHGYGE---EALQLFLEMQESG 429
           ++++  + G ++ +  +   M      + W +L+     HG  E   +A    L+++ S 
Sbjct: 487 MIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSN 546

Query: 430 VEP 432
             P
Sbjct: 547 AAP 549



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 114/460 (24%), Positives = 213/460 (46%), Gaps = 43/460 (9%)

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH--W----------- 181
           ++  C    +L  G+ +H+L I       S + S   + LYSKC    W           
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYI-KSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDP 72

Query: 182 ------------------LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQ 223
                             LIA ++F+Q+   + VS+  +IS   D       + LF  M+
Sbjct: 73  NVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMR 132

Query: 224 REGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEAL 283
             G+     TL+ V+ AC +  D+     +H  A   GFD    ++ AL+  Y +  +  
Sbjct: 133 EMGLDMDGFTLSAVITACCD--DVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLD 190

Query: 284 HPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC 343
              R+ +    ++D V W+S+I  Y Q  + S+A+ LF  M    +  +  TL ++L++ 
Sbjct: 191 DAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAF 250

Query: 344 TRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC-GSITSSHQIFNEMAARDFVSW 402
           T    LS GL  H  ++K G + +  +G+ L+++YSKC G ++   ++F E+   D V W
Sbjct: 251 TCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLW 310

Query: 403 TTLISGYGFH-GYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVM 461
            T++SGY  +  + E+AL+ F +MQ  G  P+  + + ++SAC++     + + + +  +
Sbjct: 311 NTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLAL 370

Query: 462 KEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA 521
           K    +  I      + +  K G ++DA ++   M  + +T  L+S+++    HG +E+ 
Sbjct: 371 KSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMA-EHNTVSLNSMIAGYAQHG-IEME 428

Query: 522 EMLAHQLIEAEPENAANYTLLSMV--CSESGNWLGAEEVW 559
            +   Q +        + T +S++  C+ +G     EE W
Sbjct: 429 SLHLFQWMLERQIAPTSITFISVLSACAHTGR---VEEGW 465


>gi|357520433|ref|XP_003630505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524527|gb|AET04981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 998

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 180/549 (32%), Positives = 294/549 (53%), Gaps = 4/549 (0%)

Query: 29  ILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDE 88
           +L SV+ AC   +  +  G Q+HC  L+SG   D  + N  I  Y K  K +   +LFD 
Sbjct: 244 VLSSVLSACLMLKFLEG-GKQIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLGRKLFDR 302

Query: 89  MPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELG 148
           M  ++ +SW ++I    QN F+  +L++F EM   G+   A     +++ C  +  LE G
Sbjct: 303 MVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWNPDAFGCTSVLNSCGSLVALEKG 362

Query: 149 RQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCID 208
           RQ+HA  I   + +   FV   L+D+Y+KC     A +VF  M   + VS+ AMI G   
Sbjct: 363 RQVHAYAI-KVNIDNDDFVKNGLIDMYAKCDSLTDARKVFNLMAAIDLVSYNAMIEGYSR 421

Query: 209 SQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHL 268
                  +DLFR M+     PT +    +L   A L  L     IHG     G   D   
Sbjct: 422 QDKLCEALDLFREMRLSLSSPTLLIFVSLLGVSASLYHLELSNQIHGLIIKYGVSLDEFA 481

Query: 269 SAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER 328
            +AL+ +Y +C+  +  AR++FE  + KD+V+W+++  GY+Q  +  E++KL+  +++ R
Sbjct: 482 GSALIDVYSKCSR-VGDARLVFEEIQDKDIVVWTAMFSGYTQQSENEESLKLYKCLQMSR 540

Query: 329 IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSH 388
           ++PN  T  A++++ +  + L HG   H  ++K G + D  + N L++MY+K GSI  +H
Sbjct: 541 LKPNEFTFAAVITAASNIASLRHGQQFHNQVIKMGFDDDPFVANTLVDMYAKSGSIEEAH 600

Query: 389 QIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG 448
           + F     +D   W ++I+ Y  HG  E+ALQ+F +M   G++P+ +T + +LSAC+H G
Sbjct: 601 KAFISTNWKDTACWNSMIATYAQHGEAEKALQVFEDMIMEGLKPNYVTFVGVLSACSHTG 660

Query: 449 LVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSL 508
           L+      F++ M +  I   IEHY C V LLG++GK+ +A + +  MP+K +  +  SL
Sbjct: 661 LLDLGFDHFDS-MSQFGIEPGIEHYVCMVSLLGRAGKLYEAKEFIEKMPIKQAAVVWRSL 719

Query: 509 VSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLS 568
           +SACR+ G +E+    A   I   P ++ +Y LLS + +  G W+    +   M   G+ 
Sbjct: 720 LSACRVSGNVELGTYAAEMAISCNPADSGSYVLLSNIFASKGMWVNVRRLREKMDISGVV 779

Query: 569 KSYGFSRIE 577
           K  G S IE
Sbjct: 780 KEPGCSWIE 788



 Score =  250 bits (638), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 162/550 (29%), Positives = 272/550 (49%), Gaps = 20/550 (3%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFG-----LQLHCTALKSGSDADP 63
           + L L+ Q +       N  IL SV++AC        FG     LQ+H   +K G   D 
Sbjct: 123 EALMLFVQFMRSCNEKPNEYILASVVRACT------QFGGLNPALQIHGLVVKGGYVQDV 176

Query: 64  VISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC 123
            +  SLI  Y K +  + A  LFD +  + + +W +II  +++ G    SL++F +M   
Sbjct: 177 YVCTSLIDFYTKHACIDDARLLFDGLQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEG 236

Query: 124 GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
                  +L+ ++S C  +  LE G+QIH  V+  G   + V +    +D Y KCH   +
Sbjct: 237 HVCPDKYVLSSVLSACLMLKFLEGGKQIHCYVLRSG-IVMDVSMVNGFIDFYFKCHKVQL 295

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
             ++F++MV +N VSWT +I+GC+ +  +   +DLF  M R G  P     T VL +C  
Sbjct: 296 GRKLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWNPDAFGCTSVLNSCGS 355

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
           L  L  G+ +H YA     D D  +   L+ MY +C ++L  AR +F      D+V +++
Sbjct: 356 LVALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKC-DSLTDARKVFNLMAAIDLVSYNA 414

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           +I GYS+   L EA+ LF  MRL    P  +  +++L        L     +H  I+K G
Sbjct: 415 MIEGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLLGVSASLYHLELSNQIHGLIIKYG 474

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
           ++ D   G+AL+++YSKC  +  +  +F E+  +D V WT + SGY      EE+L+L+ 
Sbjct: 475 VSLDEFAGSALIDVYSKCSRVGDARLVFEEIQDKDIVVWTAMFSGYTQQSENEESLKLYK 534

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC--YVDLLG 481
            +Q S ++P+  T  A+++A ++   ++  +   N V+   K+    + +     VD+  
Sbjct: 535 CLQMSRLKPNEFTFAAVITAASNIASLRHGQQFHNQVI---KMGFDDDPFVANTLVDMYA 591

Query: 482 KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA-EMLAHQLIEAEPENAANYT 540
           KSG IE+A K   +   K  T   +S+++    HG  E A ++    ++E    N   + 
Sbjct: 592 KSGSIEEAHKAFISTNWK-DTACWNSMIATYAQHGEAEKALQVFEDMIMEGLKPNYVTFV 650

Query: 541 LLSMVCSESG 550
            +   CS +G
Sbjct: 651 GVLSACSHTG 660



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 127/434 (29%), Positives = 218/434 (50%), Gaps = 14/434 (3%)

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFRE-M 120
           D  + N+L+  Y+K +    A +LFD M +++ ++W+S+++ +T +   + +L +F + M
Sbjct: 73  DIFLVNTLLHAYSKLNLVNHANKLFDTMSHKNLVTWSSMVSMYTHHSHCLEALMLFVQFM 132

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
             C       +LA ++  C+Q G L    QIH LV V G +   V+V T+L+D Y+K   
Sbjct: 133 RSCNEKPNEYILASVVRACTQFGGLNPALQIHGLV-VKGGYVQDVYVCTSLIDFYTKHAC 191

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
              A  +F+ + ++   +WT +I+G          + LF  M+   V P +  L+ VL A
Sbjct: 192 IDDARLLFDGLQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEGHVCPDKYVLSSVLSA 251

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
           C  L+ L  GK IH Y    G   D  +    +  Y +C   +   R +F+R   K+VV 
Sbjct: 252 CLMLKFLEGGKQIHCYVLRSGIVMDVSMVNGFIDFYFKC-HKVQLGRKLFDRMVDKNVVS 310

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           W+++I G  Q+    +A+ LF  M      P++    ++L+SC     L  G  VH Y +
Sbjct: 311 WTTVIAGCMQNSFHRDALDLFVEMARMGWNPDAFGCTSVLNSCGSLVALEKGRQVHAYAI 370

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
           K  ++ D  + N L++MY+KC S+T + ++FN MAA D VS+  +I GY       EAL 
Sbjct: 371 KVNIDNDDFVKNGLIDMYAKCDSLTDARKVFNLMAAIDLVSYNAMIEGYSRQDKLCEALD 430

Query: 421 LFLEMQESGVEPDA---ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYA--C 475
           LF EM+ S   P     +++L + ++  H  L  +   L        K  ++++ +A   
Sbjct: 431 LFREMRLSLSSPTLLIFVSLLGVSASLYHLELSNQIHGLI------IKYGVSLDEFAGSA 484

Query: 476 YVDLLGKSGKIEDA 489
            +D+  K  ++ DA
Sbjct: 485 LIDVYSKCSRVGDA 498



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 101/354 (28%), Positives = 179/354 (50%), Gaps = 13/354 (3%)

Query: 149 RQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCID 208
           ++IH+ ++V G  +  +F+   LL  YSK +    A ++F+ M  +N V+W++M+S    
Sbjct: 58  KKIHSKIVVFGFHKHDIFLVNTLLHAYSKLNLVNHANKLFDTMSHKNLVTWSSMVSMYTH 117

Query: 209 SQNYDTGIDLFRAMQRE-GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
             +    + LF    R    KP    L  V+ AC +   L     IHG     G+  D +
Sbjct: 118 HSHCLEALMLFVQFMRSCNEKPNEYILASVVRACTQFGGLNPALQIHGLVVKGGYVQDVY 177

Query: 268 LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
           +  +L+  Y +    +  AR++F+  +VK    W++II GYS+ G    ++KLF +M+  
Sbjct: 178 VCTSLIDFYTK-HACIDDARLLFDGLQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEG 236

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
            + P+   L ++LS+C    FL  G  +HCY++++G+  DVS+ N  ++ Y KC  +   
Sbjct: 237 HVCPDKYVLSSVLSACLMLKFLEGGKQIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLG 296

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN-- 445
            ++F+ M  ++ VSWTT+I+G   + +  +AL LF+EM   G  PDA    ++L++C   
Sbjct: 297 RKLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWNPDAFGCTSVLNSCGSL 356

Query: 446 ---HAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
                G    A  +  N+  +  +   +      +D+  K   + DA KV + M
Sbjct: 357 VALEKGRQVHAYAIKVNIDNDDFVKNGL------IDMYAKCDSLTDARKVFNLM 404


>gi|147765322|emb|CAN64903.1| hypothetical protein VITISV_019802 [Vitis vinifera]
          Length = 625

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 181/557 (32%), Positives = 316/557 (56%), Gaps = 14/557 (2%)

Query: 32  SVIKACAYAQTHQHFGL--QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEM 89
           +++++  ++ TH+   L  Q H   L  G   +  ++  LI  YA    P  +  +FD +
Sbjct: 25  ALLQSLHFSVTHKSLKLTRQSHSRILSLGLSQNSFLATKLIFAYAICQHPYHSRLVFDSL 84

Query: 90  PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGR 149
            +++   WNS+IN   +N  Y  + ++F +M     +     L+ +  + S++G L  G+
Sbjct: 85  QHKNVFLWNSLINGCVKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGK 144

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
            IH   I  G F     V+ +++ +Y KC ++  + +VF++M IRN  SW  +I+G   S
Sbjct: 145 SIHGKSIRTG-FVSDTVVANSIMSMYCKCGNFDESRKVFDEMTIRNSGSWNVLIAGYAVS 203

Query: 210 QN---YDTGIDLFRAMQREGVKPTRVTLTIVLLAC-AELRDLRNGKAIHGY----AYCCG 261
            N    +   +  + MQ + V+P   T++ +L  C  ++     G+ +H Y        G
Sbjct: 204 GNCNFREETWEFVKQMQMDEVRPDAYTISSLLPLCDGDMGKWDYGRELHCYIVKNELVLG 263

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
            D D HL   L+ MY    + +   R +F+R K ++V  W+++I GY ++GD  EA+ LF
Sbjct: 264 LDSDVHLGCCLIDMYSRSNKVV-VGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLF 322

Query: 322 SRMR-LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
             M+ ++ +EPN V+L+++L +C+  S L  G  +H + ++  LN +VS+ NAL++MYSK
Sbjct: 323 RDMQVIDGVEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSK 382

Query: 381 CGSITSSHQIF-NEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           CGS+ S+ ++F ++   +D +SW+++ISGYG HG G+EA+ L+ +M ++G+ PD IT + 
Sbjct: 383 CGSLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVG 442

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           ILSAC  +GLV E   ++++V+ +  I   +E  AC VD+LG++G+++ A   +  +P++
Sbjct: 443 ILSACGRSGLVNEGLNIYSSVINDYGIEPTLEICACIVDMLGRAGQLDRALDFIKAIPVE 502

Query: 500 PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVW 559
           P   +  +LVS   IHG LE+ E+    LI+ EP+N +NY  +S + + S  W    EV 
Sbjct: 503 PGPSVWGALVSCSIIHGDLEMQELAYRFLIQLEPKNPSNYVSISNLYASSRRWDAVAEVR 562

Query: 560 RVMRAKGLSKSYGFSRI 576
           R+M+ K L K  G S I
Sbjct: 563 RMMKDKRLRKVPGCSWI 579


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 200/622 (32%), Positives = 325/622 (52%), Gaps = 62/622 (9%)

Query: 13  LYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISM 72
           LY+Q +   G   +    P V KACA   +       LH T  +SG  ++  + N+++SM
Sbjct: 246 LYRQ-MKSLGWTPDHYTFPFVFKACANLSSLSLG-ASLHATVSRSGFASNVFVCNAVVSM 303

Query: 73  YAKFSKPESAYQLFDEMPYR---DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKA 129
           Y K      A+ +FD++ +R   D +SWNS+++ +        +L +F +M     +   
Sbjct: 304 YGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPD 363

Query: 130 EL-LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
            + L  I+  C+ +     GRQ+H   I  G  +  VFV  A++D+Y+KC     A +VF
Sbjct: 364 VISLVNILPACASLAASLRGRQVHGFSIRSGLVD-DVFVGNAVVDMYAKCGKMEEANKVF 422

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE----------------------- 225
           ++M  ++ VSW AM++G   +   +  + LF  M  E                       
Sbjct: 423 QRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGC 482

Query: 226 ------------GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAA-- 271
                       G +P  VTL  +L AC  +  L +GK  H YA     + D     A  
Sbjct: 483 EALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADD 542

Query: 272 ------LMHMYCECTEALHPARIIFERT--KVKDVVIWSSIIRGYSQSGDLSEAMKLFSR 323
                 L+ MY +C ++   AR +F+    K +DVV W+ +I GY+Q GD + A++LFS 
Sbjct: 543 LKVINGLIDMYAKC-QSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSG 601

Query: 324 M-RLER-IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSI----GNALMNM 377
           M ++++ I+PN  TL   L +C R + L  G  VH Y+++   NF  S+     N L++M
Sbjct: 602 MFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLR---NFYGSVMLFVANCLIDM 658

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           YSK G + ++  +F+ M  R+ VSWT+L++GYG HG GE+AL++F EM++  + PD IT 
Sbjct: 659 YSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITF 718

Query: 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
           L +L AC+H+G+V      FN + K+  +    EHYAC VDL G++G++ +A K+++ MP
Sbjct: 719 LVVLYACSHSGMVDHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMP 778

Query: 498 MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEE 557
           M+P+  +  +L+SACR+H  +E+ E  A++L+E E  N  +YTLLS + + +  W     
Sbjct: 779 MEPTPVVWVALLSACRLHSNVELGEFAANRLLELESGNDGSYTLLSNIYANARRWKDVAR 838

Query: 558 VWRVMRAKGLSKSYGFSRIENE 579
           +   M+  G+ K  G S I+  
Sbjct: 839 IRYTMKRTGIKKRPGCSWIQGR 860



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 136/266 (51%), Gaps = 5/266 (1%)

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258
           W  +I   +   +      L+R M+  G  P   T   V  ACA L  L  G ++H    
Sbjct: 227 WNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGASLHATVS 286

Query: 259 CCGFDFDHHLSAALMHMYCECTEALHPARIIFE---RTKVKDVVIWSSIIRGYSQSGDLS 315
             GF  +  +  A++ MY +C  AL  A  +F+      ++D+V W+S++  Y  + D +
Sbjct: 287 RSGFASNVFVCNAVVSMYGKCG-ALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDAN 345

Query: 316 EAMKLFSRMRLERI-EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
            A+ LF +M    +  P+ ++L+ IL +C   +    G  VH + +++GL  DV +GNA+
Sbjct: 346 TALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAV 405

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           ++MY+KCG +  ++++F  M  +D VSW  +++GY   G  E AL LF  M E  +E D 
Sbjct: 406 VDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDV 465

Query: 435 ITVLAILSACNHAGLVKEAETLFNNV 460
           +T  A+++     G   EA  +F  +
Sbjct: 466 VTWTAVITGYAQRGQGCEALDVFRQM 491



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 151/335 (45%), Gaps = 12/335 (3%)

Query: 235 TIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFER-- 292
           TI + A  E   L + K +H  +   G  F  HL+  L+  Y       + A ++ ER  
Sbjct: 162 TIPITALKECNSLAHAKLLHQQSIMQGLLF--HLATNLIGTYIASNSTAY-AILLLERLP 218

Query: 293 TKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHG 352
                V  W+ +IR     G   +   L+ +M+     P+  T   +  +C   S LS G
Sbjct: 219 PSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLG 278

Query: 353 LGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR---DFVSWTTLISGY 409
             +H  + ++G   +V + NA+++MY KCG++  +H +F+++  R   D VSW +++S Y
Sbjct: 279 ASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAY 338

Query: 410 GFHGYGEEALQLFLEMQESGV-EPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468
            +      AL LF +M    +  PD I+++ IL AC           +    ++   +  
Sbjct: 339 MWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDD 398

Query: 469 AIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
                A  VD+  K GK+E+A KV   M  K      +++V+     GRLE A  L  ++
Sbjct: 399 VFVGNAV-VDMYAKCGKMEEANKVFQRMKFKDVVS-WNAMVTGYSQAGRLEHALSLFERM 456

Query: 529 IEAEPE-NAANYTLLSMVCSESGNWLGAEEVWRVM 562
            E   E +   +T +    ++ G    A +V+R M
Sbjct: 457 TEENIELDVVTWTAVITGYAQRGQGCEALDVFRQM 491


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 177/532 (33%), Positives = 302/532 (56%), Gaps = 3/532 (0%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G+++   A++ G      + +S+++   K      A ++FD MP +D + WNSII  + Q
Sbjct: 164 GMEIIRAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQ 223

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
            G +  S++MF EM   G       +A ++  C Q G  ++G   H+ V+  G     VF
Sbjct: 224 KGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGN-DVF 282

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           V T+L+D+YS       A  VF+ M  R+ +SW AMISG + +        LFR + + G
Sbjct: 283 VLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSG 342

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
                 TL  ++  C++  DL NG+ +H        +    LS A++ MY +C  A+  A
Sbjct: 343 SGFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKELESHLVLSTAIVDMYSKCG-AIKQA 401

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
            I+F R   K+V+ W++++ G SQ+G   +A+KLF +M+ E++  NSVTL++++  C   
Sbjct: 402 TIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHL 461

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFN-EMAARDFVSWTTL 405
             L+ G  VH + ++ G  FD  I +AL++MY+KCG I S+ ++FN E   +D +   ++
Sbjct: 462 GSLTKGRTVHAHFIRHGYAFDAVITSALIDMYAKCGKIHSAEKLFNNEFHLKDVILCNSM 521

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           I GYG HG+G  AL ++  M E  ++P+  T +++L+AC+H+GLV+E + LF+++ ++  
Sbjct: 522 IMGYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLTACSHSGLVEEGKALFHSMERDHD 581

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
           +    +HYAC VDL  ++G++E+A ++V  MP +PST +L +L+S CR H    +   +A
Sbjct: 582 VRPQHKHYACLVDLHSRAGRLEEADELVKQMPFQPSTDVLEALLSGCRTHKNTNMGIQIA 641

Query: 526 HQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +LI  +  N+  Y +LS + +E+  W     +  +MR +G+ K  G+S IE
Sbjct: 642 DRLISLDYLNSGIYVMLSNIYAEARKWESVNYIRGLMRMQGMKKIPGYSLIE 693



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 129/511 (25%), Positives = 250/511 (48%), Gaps = 22/511 (4%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           +H   +K+    +  ++  LI +Y+       A  +FD+    +T   N++I  F +N  
Sbjct: 66  IHAQIIKNWVSTESFLAAKLIRVYSDLGFLGHARNVFDQCSLPETAVCNAMIAGFLRNQQ 125

Query: 110 YVRSLEMFREM---------YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGS 160
           ++    +FR M         Y C F LKA         C+ + + E+G +I    +  G 
Sbjct: 126 HMEVPRLFRMMGSCDIEINSYTCMFALKA---------CTDLLDDEVGMEIIRAAVRRG- 175

Query: 161 FELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFR 220
           F L ++V +++++   K  +   A +VF+ M  ++ V W ++I G +    +   I +F 
Sbjct: 176 FHLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFL 235

Query: 221 AMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECT 280
            M   G++P+ VT+  +L AC +    + G   H Y    G   D  +  +L+ MY    
Sbjct: 236 EMIGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLG 295

Query: 281 EALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAIL 340
           +    A ++F+    + ++ W+++I GY Q+G + E+  LF R+       +S TL++++
Sbjct: 296 DT-GSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLI 354

Query: 341 SSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFV 400
             C++ S L +G  +H  I++  L   + +  A+++MYSKCG+I  +  +F  M  ++ +
Sbjct: 355 RGCSQTSDLENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVI 414

Query: 401 SWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNV 460
           +WT ++ G   +GY E+AL+LF +MQE  V  +++T+++++  C H G + +  T+  + 
Sbjct: 415 TWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHF 474

Query: 461 MKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEV 520
           ++      A+   A  +D+  K GKI  A K+ +         + +S++    +HG    
Sbjct: 475 IRHGYAFDAVITSA-LIDMYAKCGKIHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHGRY 533

Query: 521 AEMLAHQLIEAE-PENAANYTLLSMVCSESG 550
           A  +  ++IE     N   +  L   CS SG
Sbjct: 534 ALGVYSRMIEERLKPNQTTFVSLLTACSHSG 564



 Score = 38.9 bits (89), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 1/151 (0%)

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
           L H   +H  I+K  ++ +  +   L+ +YS  G +  +  +F++ +  +      +I+G
Sbjct: 60  LIHVKSIHAQIIKNWVSTESFLAAKLIRVYSDLGFLGHARNVFDQCSLPETAVCNAMIAG 119

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468
           +  +    E  +LF  M    +E ++ T +  L AC    L  E           +   L
Sbjct: 120 FLRNQQHMEVPRLFRMMGSCDIEINSYTCMFALKACTDL-LDDEVGMEIIRAAVRRGFHL 178

Query: 469 AIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
            +   +  V+ L K G + DA KV   MP K
Sbjct: 179 HLYVGSSMVNFLVKRGYLADAQKVFDGMPEK 209


>gi|357457477|ref|XP_003599019.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488067|gb|AES69270.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 944

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 167/530 (31%), Positives = 294/530 (55%), Gaps = 1/530 (0%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G +++  AL+ G  +D V++  ++ MYAK  + + A +LF  +  RD ++W++ ++   +
Sbjct: 318 GKEIYNYALQMGLMSDIVVATPIVCMYAKCGELKKARELFLSLEGRDLVAWSAFLSALVE 377

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
            G+    L +F+ M   G      +L+ ++S C++I  + LG+ +H   I     E  + 
Sbjct: 378 TGYPREVLSIFQVMQYEGLKPDKAILSILVSGCTEISNIGLGKIMHCYAI-KADMESDIS 436

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           + T L+ +Y +   +  A+ +F +M I++ V W  +I+G     +    +++F  +Q  G
Sbjct: 437 MVTTLVSMYIRFELFTYAMTLFNRMQIKDIVVWNTLINGFTKYGDPHLALEMFNRLQLSG 496

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           + P   T+  +  ACA + DL  G  +HG     GF+ D H+  ALM MY +C       
Sbjct: 497 ILPDSGTMVGLFSACAIMDDLDLGTCLHGGIEKSGFESDIHVKVALMDMYAKCGSLCSVE 556

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
           R+      VKD V W+ +I GY  +G  +EA+  F RM+LE + PN VT + IL + +  
Sbjct: 557 RLFLLTKHVKDEVSWNVMIAGYLHNGYSNEAISTFRRMKLENVRPNLVTFVTILPAVSYL 616

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
           S L   +  H  I++ G      IGN+L++MY+KCG +  S + F+EM  +D +SW  ++
Sbjct: 617 SILREAMAFHTCIIRMGFLSCTLIGNSLIDMYAKCGQLRYSEKCFHEMENKDTISWNAML 676

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
           S Y  HG GE A+ LF  MQES V  D+++ +++LSAC H+GL++E   +F ++ ++  +
Sbjct: 677 SAYAMHGQGELAVALFSVMQESNVRVDSVSYISVLSACRHSGLIQEGWDIFASMCEKHHV 736

Query: 467 ALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAH 526
             ++EHYAC VDLLG +G  ++   +++ M  +P  R+  +L++AC+IH  + + E+  H
Sbjct: 737 EPSMEHYACMVDLLGCAGLFDEVLSLLNKMTTEPDARVWGALLAACKIHSNVTLGEVAVH 796

Query: 527 QLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
            L++ EP N  ++ +LS + ++ G W  A      +   GL K  G+S +
Sbjct: 797 HLLKLEPRNPVHHVVLSDIYAQCGRWNDARRTRSHINNHGLKKIPGYSWV 846



 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 141/440 (32%), Positives = 239/440 (54%), Gaps = 6/440 (1%)

Query: 5   HFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPV 64
           H + + ++LY   L   GL  +      V+KAC  A    H G+ ++   + +G + D  
Sbjct: 78  HHFHKAINLYHTIL-KIGLKPDKFTFNFVLKACTSALDF-HEGVNIYKDIVFNGLECDVY 135

Query: 65  ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG 124
           I  SLI M+ K    ++A  +FD+MP +D + WN++I+  +Q+     +LEMF  M + G
Sbjct: 136 IGTSLIDMFCKMGCLDNARNVFDKMPVKDGVCWNAMISGLSQSLNPCEALEMFWRMQMEG 195

Query: 125 FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
           F +    +  +    S++G++   + IH  V+      +   VS +L+D+Y KC     A
Sbjct: 196 FEVDKVSILNLAPAVSRLGDVGCCKSIHGYVV---RRSICGVVSNSLIDMYCKCGDVHSA 252

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
            RVF++M +R++VSW  M++G + +  Y  G+ L   M+R  VK  +V +   LL  AE+
Sbjct: 253 QRVFDRMGVRDDVSWATMMAGYVKNGCYFEGLQLLHKMRRGNVKMNKVAVVNALLVVAEM 312

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
           RDL  GK I+ YA   G   D  ++  ++ MY +C E L  AR +F   + +D+V WS+ 
Sbjct: 313 RDLEKGKEIYNYALQMGLMSDIVVATPIVCMYAKCGE-LKKARELFLSLEGRDLVAWSAF 371

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
           +    ++G   E + +F  M+ E ++P+   L  ++S CT  S +  G  +HCY +KA +
Sbjct: 372 LSALVETGYPREVLSIFQVMQYEGLKPDKAILSILVSGCTEISNIGLGKIMHCYAIKADM 431

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
             D+S+   L++MY +    T +  +FN M  +D V W TLI+G+  +G    AL++F  
Sbjct: 432 ESDISMVTTLVSMYIRFELFTYAMTLFNRMQIKDIVVWNTLINGFTKYGDPHLALEMFNR 491

Query: 425 MQESGVEPDAITVLAILSAC 444
           +Q SG+ PD+ T++ + SAC
Sbjct: 492 LQLSGILPDSGTMVGLFSAC 511



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 118/439 (26%), Positives = 208/439 (47%), Gaps = 54/439 (12%)

Query: 13  LYKQELHPSGLYSNTAILPSVIKACAYA----QTHQHFGLQLHCTALKSGSDADPVISNS 68
           L+   + P    +N      +I +C Y     Q H HF LQ+   +L        ++ NS
Sbjct: 19  LHTHHIFPIQQQNNNNHYLKLINSCKYINPLLQIHTHF-LQIKNPSL--------ILYNS 69

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
            I  Y+KF     A  L+                        +  + +  + +   FVLK
Sbjct: 70  FIKAYSKFHHFHKAINLYHT----------------------ILKIGLKPDKFTFNFVLK 107

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
           A         C+   +   G  I+  ++ +G  E  V++ T+L+D++ K      A  VF
Sbjct: 108 A---------CTSALDFHEGVNIYKDIVFNG-LECDVYIGTSLIDMFCKMGCLDNARNVF 157

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
           ++M +++ V W AMISG   S N    +++F  MQ EG +  +V++  +  A + L D+ 
Sbjct: 158 DKMPVKDGVCWNAMISGLSQSLNPCEALEMFWRMQMEGFEVDKVSILNLAPAVSRLGDVG 217

Query: 249 NGKAIHGYAY---CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
             K+IHGY      CG      +S +L+ MYC+C + +H A+ +F+R  V+D V W++++
Sbjct: 218 CCKSIHGYVVRRSICGV-----VSNSLIDMYCKCGD-VHSAQRVFDRMGVRDDVSWATMM 271

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
            GY ++G   E ++L  +MR   ++ N V ++  L        L  G  ++ Y ++ GL 
Sbjct: 272 AGYVKNGCYFEGLQLLHKMRRGNVKMNKVAVVNALLVVAEMRDLEKGKEIYNYALQMGLM 331

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            D+ +   ++ MY+KCG +  + ++F  +  RD V+W+  +S     GY  E L +F  M
Sbjct: 332 SDIVVATPIVCMYAKCGELKKARELFLSLEGRDLVAWSAFLSALVETGYPREVLSIFQVM 391

Query: 426 QESGVEPDAITVLAILSAC 444
           Q  G++PD   +  ++S C
Sbjct: 392 QYEGLKPDKAILSILVSGC 410



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/375 (26%), Positives = 179/375 (47%), Gaps = 48/375 (12%)

Query: 210 QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS 269
            ++   I+L+  + + G+KP + T   VL AC    D   G  I+      G + D ++ 
Sbjct: 78  HHFHKAINLYHTILKIGLKPDKFTFNFVLKACTSALDFHEGVNIYKDIVFNGLECDVYIG 137

Query: 270 AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
            +L+ M+C+    L  AR +F++  VKD V W+++I G SQS +  EA+++F RM++E  
Sbjct: 138 TSLIDMFCK-MGCLDNARNVFDKMPVKDGVCWNAMISGLSQSLNPCEALEMFWRMQMEGF 196

Query: 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
           E + V++L +  + +R   +     +H Y+++  +   VS  N+L++MY KCG + S+ +
Sbjct: 197 EVDKVSILNLAPAVSRLGDVGCCKSIHGYVVRRSICGVVS--NSLIDMYCKCGDVHSAQR 254

Query: 390 IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE------------------ 431
           +F+ M  RD VSW T+++GY  +G   E LQL  +M+   V+                  
Sbjct: 255 VFDRMGVRDDVSWATMMAGYVKNGCYFEGLQLLHKMRRGNVKMNKVAVVNALLVVAEMRD 314

Query: 432 -----------------PDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYA 474
                             D +    I+      G +K+A  LF ++     +A     ++
Sbjct: 315 LEKGKEIYNYALQMGLMSDIVVATPIVCMYAKCGELKKARELFLSLEGRDLVA-----WS 369

Query: 475 CYVDLLGKSGKIEDACKVVSTMP---MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA 531
            ++  L ++G   +   +   M    +KP   ILS LVS C     + + +++    I+A
Sbjct: 370 AFLSALVETGYPREVLSIFQVMQYEGLKPDKAILSILVSGCTEISNIGLGKIMHCYAIKA 429

Query: 532 EPENAANY--TLLSM 544
           + E+  +   TL+SM
Sbjct: 430 DMESDISMVTTLVSM 444



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 105/210 (50%), Gaps = 3/210 (1%)

Query: 290 FERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFL 349
           F + K   +++++S I+ YS+     +A+ L+  +    ++P+  T   +L +CT     
Sbjct: 56  FLQIKNPSLILYNSFIKAYSKFHHFHKAINLYHTILKIGLKPDKFTFNFVLKACTSALDF 115

Query: 350 SHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGY 409
             G+ ++  I+  GL  DV IG +L++M+ K G + ++  +F++M  +D V W  +ISG 
Sbjct: 116 HEGVNIYKDIVFNGLECDVYIGTSLIDMFCKMGCLDNARNVFDKMPVKDGVCWNAMISGL 175

Query: 410 GFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA 469
                  EAL++F  MQ  G E D +++L +  A +  G V   +++   V++     + 
Sbjct: 176 SQSLNPCEALEMFWRMQMEGFEVDKVSILNLAPAVSRLGDVGCCKSIHGYVVRRSICGVV 235

Query: 470 IEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
                  +D+  K G +  A +V   M ++
Sbjct: 236 SN---SLIDMYCKCGDVHSAQRVFDRMGVR 262


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  320 bits (821), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 178/558 (31%), Positives = 303/558 (54%), Gaps = 6/558 (1%)

Query: 23  LYSNTAI-LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           LY+N+ I   S   +   + TH+    Q+H   L  G      +   LI   + +     
Sbjct: 12  LYTNSGIHSDSFYASLIDSSTHKAQLRQIHARLLVLGLQFSGFLITKLIHASSSYGDITF 71

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A Q+FD++P      WN+II  +++N  +  +L M+ +M L      +     ++  C  
Sbjct: 72  ARQVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGG 131

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI--RNEVSW 199
           +  L++GR +HA V   G FE  VFV   L+ LY+KC     A  VFE + +  R  VSW
Sbjct: 132 LSHLQMGRFVHAQVFRLG-FEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSW 190

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
           TA++S    +      +++F  M++  VKP  V L  VL A   L+DL  G++IH     
Sbjct: 191 TAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMK 250

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
            G + +  L  +L  MY +C + +  A+I+F++ K  ++++W+++I GY+++G   +A+ 
Sbjct: 251 MGLETEPDLLISLNTMYAKCGQ-VATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAID 309

Query: 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           LF  M  + + P+++++ + +S+C +   L     +  Y+ ++    DV I +AL++M++
Sbjct: 310 LFHEMINKDVRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFA 369

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           KCGS+  +  +F+    RD V W+ +I GYG HG   EA+ L+  M+  GV P+ +T L 
Sbjct: 370 KCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLG 429

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           +L ACNH+G+V+E    FN  M + KI    +HYAC +DLLG++G ++ A +V+  MP++
Sbjct: 430 LLIACNHSGMVREGWWFFNR-MADHKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQ 488

Query: 500 PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVW 559
           P   +  +L+SAC+ H  +E+ +  A QL   +P N  +Y  LS + + +  W    EV 
Sbjct: 489 PGVTVWGALLSACKKHRHVELGKYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVR 548

Query: 560 RVMRAKGLSKSYGFSRIE 577
             M+ KGL+K  G S +E
Sbjct: 549 VRMKEKGLNKDVGCSWVE 566


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  320 bits (821), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 182/547 (33%), Positives = 300/547 (54%), Gaps = 4/547 (0%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPY 91
           S++K CA A+     G  +H      G D++ + + +L +MYAK  +P  A ++FD MP 
Sbjct: 64  SLLKLCA-ARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRMPV 122

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMYLC-GFVLKAELLAGIISLCSQIGELELGRQ 150
           RD ++WN+++  + +NG    ++EM   M    G    +  L  ++  C+    L   R+
Sbjct: 123 RDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACRE 182

Query: 151 IHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQ 210
            HA  I  G  EL V V+TA+LD Y KC     A  VF+ M  +N VSW AMI G   + 
Sbjct: 183 AHAFAIRSGLEEL-VNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNG 241

Query: 211 NYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSA 270
           +    + LF  M  EGV  T V++   L AC EL  L  G  +H      G D +  +  
Sbjct: 242 DSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMN 301

Query: 271 ALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE 330
           AL+ MY +C   +  A  +F+    +  V W+++I G +Q+G   +A++LF+RM+LE ++
Sbjct: 302 ALITMYSKCKR-VDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVK 360

Query: 331 PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQI 390
           P+S TL++++ +    S       +H Y ++  L+ DV +  AL++MY+KCG +  +  +
Sbjct: 361 PDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARIL 420

Query: 391 FNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLV 450
           FN    R  ++W  +I GYG HG+G+ A++LF EM+  G+ P+  T L++LSAC+HAGLV
Sbjct: 421 FNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLV 480

Query: 451 KEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVS 510
            E    F ++ ++  +   +EHY   VDLLG++GK+++A   +  MPM P   +  +++ 
Sbjct: 481 DEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLG 540

Query: 511 ACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKS 570
           AC++H  +E+AE  A ++ E  P+    + LL+ + + +  W     V   M   GL K+
Sbjct: 541 ACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKT 600

Query: 571 YGFSRIE 577
            G+S I+
Sbjct: 601 PGWSIIQ 607



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 110/332 (33%), Positives = 188/332 (56%), Gaps = 3/332 (0%)

Query: 113 SLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALL 172
           +L  F  M   G          ++ LC+  G+L  GR +HA +   G  +     +TAL 
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARG-IDSEALAATALA 101

Query: 173 DLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQ-REGVKPTR 231
           ++Y+KC     A RVF++M +R+ V+W A+++G   +      +++   MQ  EG +P  
Sbjct: 102 NMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDS 161

Query: 232 VTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFE 291
           +TL  VL ACA  R L   +  H +A   G +   +++ A++  YC+C + +  AR++F+
Sbjct: 162 ITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGD-IRAARVVFD 220

Query: 292 RTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSH 351
               K+ V W+++I GY+Q+GD  EA+ LF+RM  E ++   V++LA L +C     L  
Sbjct: 221 WMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDE 280

Query: 352 GLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGF 411
           G+ VH  +++ GL+ +VS+ NAL+ MYSKC  +  +  +F+E+  R  VSW  +I G   
Sbjct: 281 GMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQ 340

Query: 412 HGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
           +G  E+A++LF  MQ   V+PD+ T+++++ A
Sbjct: 341 NGCSEDAVRLFTRMQLENVKPDSFTLVSVIPA 372



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/236 (34%), Positives = 130/236 (55%), Gaps = 2/236 (0%)

Query: 219 FRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCE 278
           F AM   G  P   T T +L  CA   DL  G+A+H      G D +   + AL +MY +
Sbjct: 47  FVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAK 106

Query: 279 CTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE-PNSVTLL 337
           C      AR +F+R  V+D V W++++ GY+++G    AM++  RM+ E  E P+S+TL+
Sbjct: 107 CRRPAD-ARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLV 165

Query: 338 AILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR 397
           ++L +C     L+     H + +++GL   V++  A+++ Y KCG I ++  +F+ M  +
Sbjct: 166 SVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTK 225

Query: 398 DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEA 453
           + VSW  +I GY  +G   EAL LF  M E GV+   ++VLA L AC   G + E 
Sbjct: 226 NSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEG 281



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 68/130 (52%), Gaps = 1/130 (0%)

Query: 313 DLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN 372
           DL  A+  F  M      P   T  ++L  C  +  L+ G  VH  +   G++ +     
Sbjct: 39  DLPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAAT 98

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ-ESGVE 431
           AL NMY+KC     + ++F+ M  RD V+W  L++GY  +G    A+++ + MQ E G  
Sbjct: 99  ALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGER 158

Query: 432 PDAITVLAIL 441
           PD+IT++++L
Sbjct: 159 PDSITLVSVL 168


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 187/528 (35%), Positives = 299/528 (56%), Gaps = 8/528 (1%)

Query: 54  ALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRS 113
           A +  SD +    N++I+ YAK S+P  A+QLFD++P  D +S+N++I+ +   G    +
Sbjct: 65  AFQDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPA 124

Query: 114 LEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLD 173
           L +F  M   G  +    L+ +I+ C    ++ L  Q+H++ +  G F+  V V+ ALL 
Sbjct: 125 LGLFSGMREMGLDMDXFTLSAVITACCD--DVGLIGQLHSVAVSSG-FDSYVSVNNALLT 181

Query: 174 LYSKCHHWLIALRVFEQMV-IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRV 232
            Y K      A RVF  M  IR+EVSW +MI      Q     + LF+ M R G+     
Sbjct: 182 YYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMF 241

Query: 233 TLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFER 292
           TL  VL A   L DL  G   HG     GF  + H+ + L+ +Y +C   +   R +FE 
Sbjct: 242 TLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEE 301

Query: 293 TKVKDVVIWSSIIRGYSQSGD-LSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSH 351
               D+V+W++++ GYSQ+ + L +A++ F +M+     PN  + + ++S+C+  S  S 
Sbjct: 302 ITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQ 361

Query: 352 GLGVHCYIMKAGLNFD-VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYG 410
           G  +H   +K+ +  + +S+ NAL+ MYSKCG++  + ++F+ MA  + VS  ++I+GY 
Sbjct: 362 GKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYA 421

Query: 411 FHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK-KIALA 469
            HG   E+L LF  M E  + P +IT +++LSAC H G V+E    FN +MKEK  I   
Sbjct: 422 QHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFN-MMKEKFNIEPE 480

Query: 470 IEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLI 529
            EHY+C +DLLG++GK+ +A  +++ MP  P +   +SL+ ACR HG +E+A   A+Q++
Sbjct: 481 AEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVL 540

Query: 530 EAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           + EP NAA Y +LS + + +G W     V + MR +G+ K  G S IE
Sbjct: 541 QLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIE 588



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 120/423 (28%), Positives = 205/423 (48%), Gaps = 20/423 (4%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGL--QLHCTALKSGSDADPVISNSLISMYAKFSKP 79
           GL  +   L +VI AC         GL  QLH  A+ SG D+   ++N+L++ Y K    
Sbjct: 135 GLDMDXFTLSAVITACC-----DDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDL 189

Query: 80  ESAYQLFDEM-PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISL 138
           + A ++F  M   RD +SWNS+I  + Q+    ++L +F+EM   G  +    LA +++ 
Sbjct: 190 DDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTA 249

Query: 139 CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR-VFEQMVIRNEV 197
            + + +L  G Q H  +I  G F  +  V + L+DLYSKC   +   R VFE++   + V
Sbjct: 250 FTCLEDLSGGLQFHGQLIKTG-FHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLV 308

Query: 198 SWTAMISGCIDSQNY-DTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
            W  M+SG   ++ + +  ++ FR MQ  G +P   +   V+ AC+ L     GK IH  
Sbjct: 309 LWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSL 368

Query: 257 AYCCGFDFDH-HLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
           A       +   +  AL+ MY +C   L  AR +F+R    + V  +S+I GY+Q G   
Sbjct: 369 ALKSDIPSNRISVDNALIAMYSKCGN-LQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEM 427

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG--NA 373
           E++ LF  M   +I P S+T +++LS+C     +  G   +  +MK   N +      + 
Sbjct: 428 ESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWN-YFNMMKEKFNIEPEAEHYSC 486

Query: 374 LMNMYSKCGSITSSHQIFNEMAARD-FVSWTTLISGYGFHGYGE---EALQLFLEMQESG 429
           ++++  + G ++ +  +   M      + W +L+     HG  E   +A    L+++ S 
Sbjct: 487 MIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSN 546

Query: 430 VEP 432
             P
Sbjct: 547 AAP 549



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 114/460 (24%), Positives = 213/460 (46%), Gaps = 43/460 (9%)

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH--W----------- 181
           ++  C    +L  G+ +H+L I       S + S   + LYSKC    W           
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYI-KSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDP 72

Query: 182 ------------------LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQ 223
                             LIA ++F+Q+   + VS+  +IS   D       + LF  M+
Sbjct: 73  NVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMR 132

Query: 224 REGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEAL 283
             G+     TL+ V+ AC +  D+     +H  A   GFD    ++ AL+  Y +  +  
Sbjct: 133 EMGLDMDXFTLSAVITACCD--DVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLD 190

Query: 284 HPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC 343
              R+ +    ++D V W+S+I  Y Q  + S+A+ LF  M    +  +  TL ++L++ 
Sbjct: 191 DAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAF 250

Query: 344 TRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC-GSITSSHQIFNEMAARDFVSW 402
           T    LS GL  H  ++K G + +  +G+ L+++YSKC G ++   ++F E+   D V W
Sbjct: 251 TCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLW 310

Query: 403 TTLISGYGFH-GYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVM 461
            T++SGY  +  + E+AL+ F +MQ  G  P+  + + ++SAC++     + + + +  +
Sbjct: 311 NTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLAL 370

Query: 462 KEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA 521
           K    +  I      + +  K G ++DA ++   M  + +T  L+S+++    HG +E+ 
Sbjct: 371 KSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMA-EHNTVSLNSMIAGYAQHG-IEME 428

Query: 522 EMLAHQLIEAEPENAANYTLLSMV--CSESGNWLGAEEVW 559
            +   Q +        + T +S++  C+ +G     EE W
Sbjct: 429 SLHLFQWMLERQIAPTSITFISVLSACAHTGR---VEEGW 465


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 185/571 (32%), Positives = 312/571 (54%), Gaps = 6/571 (1%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           +++ L+LY + L    +  N    PSV+K CA        G ++H   ++ G ++D  + 
Sbjct: 179 FDEALNLYHRMLWAE-IRPNVYTFPSVLKTCAGVSDIAR-GKEIHAHVIRFGFESDVDVG 236

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           N+LI+MY K     +A  LFD+MP RD ISWN++I+ + +NG  +  LE+F  M      
Sbjct: 237 NALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVD 296

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
                +  + S C  +    LGR +H  V V   F   + ++ +L+ +YS       A  
Sbjct: 297 PDLITMTTVASACELLDNERLGRGVHGYV-VKSEFGGDISMNNSLIQMYSSLGRLEEAET 355

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VF +M  ++ VSWTAMI+  +  +     ++ ++ M+ EG+ P  +TL  VL ACA +  
Sbjct: 356 VFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGH 415

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L  G  +H  A   G      +S +L+ MY +C + +  A  +F     K+VV W+S+I 
Sbjct: 416 LDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKC-KCVDNALEVFRNISGKNVVSWTSLIL 474

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           G   +    EA+  F +M+ E ++PNSVTL+++LS+C R   L  G  +H + ++ G+ F
Sbjct: 475 GLRINNRSFEALLFFRQMK-ESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGF 533

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           D  + NA+++MY +CG    +   FN    +D  +W  L++GY   G  + A++LF +M 
Sbjct: 534 DGFLPNAILDMYVRCGRKVPALNQFNSQK-KDVTAWNILLTGYAQQGQAKLAVELFDKML 592

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
           E  + PD IT +++L AC+ +G+V E    FN +  +  +   ++HYAC VD+LG++G++
Sbjct: 593 ELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQL 652

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546
           +DA   +  MP++P   I  +L++ACRIH  +E+ E+ A ++ E + ++   Y LL  + 
Sbjct: 653 DDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLY 712

Query: 547 SESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +  GNW    +V  +MR +GLS   G S +E
Sbjct: 713 AGCGNWDKVSKVRSLMRERGLSADPGCSWVE 743



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 143/505 (28%), Positives = 262/505 (51%), Gaps = 13/505 (2%)

Query: 65  ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG 124
           + N+L+SM+ +F     A+ +F +M  RD  SWN ++  + + G +  +L ++  M    
Sbjct: 134 LGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAE 193

Query: 125 FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
                     ++  C+ + ++  G++IHA VI  G FE  V V  AL+ +Y KC     A
Sbjct: 194 IRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFG-FESDVDVGNALITMYVKCGDISNA 252

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
             +F++M  R+ +SW AMISG  ++     G++LF  M+   V P  +T+T V  AC  L
Sbjct: 253 RMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELL 312

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
            + R G+ +HGY     F  D  ++ +L+ MY      L  A  +F R + KDVV W+++
Sbjct: 313 DNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGR-LEEAETVFSRMESKDVVSWTAM 371

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
           I          +A++ +  M LE I P+ +TL+++LS+C     L  G+ +H   +K GL
Sbjct: 372 IASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGL 431

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
              V + N+L++MYSKC  + ++ ++F  ++ ++ VSWT+LI G   +    EAL  F +
Sbjct: 432 VSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQ 491

Query: 425 MQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGK 482
           M+ES ++P+++T++++LSAC   G +   + +  + +   +  +  + +     +D+  +
Sbjct: 492 MKES-MKPNSVTLISVLSACARIGALMRGKEIHAHAL---RTGVGFDGFLPNAILDMYVR 547

Query: 483 SGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE--PENAANYT 540
            G+   A    ++   K      + L++     G+ ++A  L  +++E E  P+     +
Sbjct: 548 CGRKVPALNQFNS--QKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFIS 605

Query: 541 LLSMVCSESGNWLGAEEVWRVMRAK 565
           LL   CS+SG      E + +M+ K
Sbjct: 606 LLC-ACSKSGMVTEGLEYFNIMKNK 629



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 120/440 (27%), Positives = 220/440 (50%), Gaps = 8/440 (1%)

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           ++ LC      + G +++ LV    S  L V +  ALL ++ +  + L A  VF +M  R
Sbjct: 103 LLRLCEWRRAPDEGSRVYELVSSSKSC-LCVRLGNALLSMFVRFGNLLDAWYVFGKMSER 161

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
           +  SW  ++ G   +  +D  ++L+  M    ++P   T   VL  CA + D+  GK IH
Sbjct: 162 DVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIH 221

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
            +    GF+ D  +  AL+ MY +C + +  AR++F++   +D + W+++I GY ++G  
Sbjct: 222 AHVIRFGFESDVDVGNALITMYVKCGD-ISNARMLFDKMPKRDRISWNAMISGYFENGGG 280

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
            E ++LFS MR   ++P+ +T+  + S+C        G GVH Y++K+    D+S+ N+L
Sbjct: 281 LEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSL 340

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           + MYS  G +  +  +F+ M ++D VSWT +I+    H    +A++ +  M+  G+ PD 
Sbjct: 341 IQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDE 400

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS 494
           IT++++LSAC   G +     L    +K   ++  I   +  +D+  K   +++A +V  
Sbjct: 401 ITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNS-LIDMYSKCKCVDNALEVFR 459

Query: 495 TMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLG 554
            +  K      +SL+   RI+ R   A +   Q+ E+   N+     +   C+  G  + 
Sbjct: 460 NISGKNVVS-WTSLILGLRINNRSFEALLFFRQMKESMKPNSVTLISVLSACARIGALMR 518

Query: 555 AEEVWRVMRAKGLSKSYGFS 574
            +E+     A  L    GF 
Sbjct: 519 GKEI----HAHALRTGVGFD 534



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 88/191 (46%), Gaps = 7/191 (3%)

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
           G+L +AMK    M   RIE      +A+L  C  +     G  V+  +  +     V +G
Sbjct: 76  GNLEQAMKRLESMLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLG 135

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
           NAL++M+ + G++  +  +F +M+ RD  SW  L+ GY   G  +EAL L+  M  + + 
Sbjct: 136 NALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIR 195

Query: 432 PDAITVLAILSACNHAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLLGKSGKIED 488
           P+  T  ++L  C     +   + +  +V++   E  + +       YV    K G I +
Sbjct: 196 PNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYV----KCGDISN 251

Query: 489 ACKVVSTMPMK 499
           A  +   MP +
Sbjct: 252 ARMLFDKMPKR 262


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 176/548 (32%), Positives = 301/548 (54%), Gaps = 31/548 (5%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEM 89
           + S++ ACA      + G Q H  A+K+G  +D V+  SL+ +Y K S  ++A++ F   
Sbjct: 355 VASLLSACASVGALPN-GKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFF--- 410

Query: 90  PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGR 149
                        C+ Q     +S ++F +M + G V        I+  C+ +G  +LG 
Sbjct: 411 ------------LCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGE 458

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
           QIH  V+  G F+ +V+VS+ L+D+Y+K      AL++F ++   + VSWTAMI+G    
Sbjct: 459 QIHTQVLKTG-FQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQH 517

Query: 210 QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS 269
             +   ++LF+ MQ +G+K   +     + ACA ++ L  G+ IH  +   G+  D  + 
Sbjct: 518 DKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIG 577

Query: 270 AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
            AL+ +Y  C + +  A   F++   KD V W+S++ G++QSG   EA+ +F++M    +
Sbjct: 578 NALVSLYARCGK-VREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGL 636

Query: 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
           E NS T  + +S+    + +  G  +H  I K G + +  + NAL+ +Y+KCG+I     
Sbjct: 637 EINSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTI----- 691

Query: 390 IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL 449
                   D +SW ++I+GY  HG G EAL+LF +M++  V P+ +T + +LSAC+H GL
Sbjct: 692 --------DDISWNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGL 743

Query: 450 VKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLV 509
           V E  + F ++ +   +    EHYAC VDLLG+SG +  A + V  MP++P   +  +L+
Sbjct: 744 VDEGISYFRSMSEAHNLVPKPEHYACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLL 803

Query: 510 SACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSK 569
           SAC +H  +++ E  A  L+E EP+++A Y L+S + + SG W   +   ++M+ +G+ K
Sbjct: 804 SACNVHKNIDIGEFAASHLLELEPKDSATYVLVSNMYAVSGKWDCRDRTRQMMKDRGVKK 863

Query: 570 SYGFSRIE 577
             G S +E
Sbjct: 864 EPGRSWVE 871



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 148/511 (28%), Positives = 246/511 (48%), Gaps = 43/511 (8%)

Query: 29  ILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDE 88
           I   V++ C+       F  Q+H   + SG ++   I N LI +Y K     SA ++F+ 
Sbjct: 165 IFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFEN 224

Query: 89  MPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELG 148
           +  RD++SW ++I+  +QNG+   ++ +F     C  VL A         C+++   E G
Sbjct: 225 LKARDSVSWVAMISGLSQNGYEEEAMLLF-----CQIVLSA---------CTKVEFFEFG 270

Query: 149 RQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCID 208
           +Q+H LV+  G F    +V  AL+ LYS+  +   A ++F  M  R+ VS+ ++ISG   
Sbjct: 271 KQLHGLVLKQG-FSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQ 329

Query: 209 SQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHL 268
               +  + LF+ M  +  KP  VT+  +L ACA +  L NGK  H YA   G   D  +
Sbjct: 330 QGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVV 389

Query: 269 SAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER 328
             +L+ +Y +C+                D+         Y Q  +L+++ ++F++M++E 
Sbjct: 390 EGSLLDLYVKCS----------------DIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEG 433

Query: 329 IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSH 388
           I PN  T  +IL +CT       G  +H  ++K G  F+V + + L++MY+K G +  + 
Sbjct: 434 IVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHAL 493

Query: 389 QIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN--- 445
           +IF  +   D VSWT +I+GY  H    EAL LF EMQ+ G++ D I   + +SAC    
Sbjct: 494 KIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQ 553

Query: 446 --HAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTR 503
               G    A++  +    +  I  A+      V L  + GK+ +A      +  K +  
Sbjct: 554 ALDQGRQIHAQSCLSGYSDDLSIGNAL------VSLYARCGKVREAYAAFDQIYAKDNVS 607

Query: 504 ILSSLVSACRIHGRLEVAEMLAHQLIEAEPE 534
             +SLVS     G  E A  +  Q+ +A  E
Sbjct: 608 -WNSLVSGFAQSGYFEEALNIFAQMNKAGLE 637



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 126/425 (29%), Positives = 192/425 (45%), Gaps = 33/425 (7%)

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           LI  Y  F     A  +FDEMP R    WN I N F       R   +FR M        
Sbjct: 103 LIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFD 162

Query: 129 AELLAGIISLCS-QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
             + A ++  CS          QIHA  I  G FE S F+   L+DLY K      A +V
Sbjct: 163 ERIFAVVLRGCSGNAVSFRFVEQIHAKTITSG-FESSTFICNPLIDLYFKNGFLSSAKKV 221

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           FE +  R+ VSW AMISG   +   +  + LF                IVL AC ++   
Sbjct: 222 FENLKARDSVSWVAMISGLSQNGYEEEAMLLF--------------CQIVLSACTKVEFF 267

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
             GK +HG     GF  + ++  AL+ +Y   +  L  A  IF     +D V ++S+I G
Sbjct: 268 EFGKQLHGLVLKQGFSSETYVCNALVTLYSR-SGNLSSAEQIFHCMSQRDRVSYNSLISG 326

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
            +Q G ++ A+ LF +M L+  +P+ VT+ ++LS+C     L +G   H Y +KAG+  D
Sbjct: 327 LAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSD 386

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
           + +  +L+++Y KC  I ++H+ F                 YG      ++ Q+F +MQ 
Sbjct: 387 IVVEGSLLDLYVKCSDIKTAHEFF---------------LCYGQLDNLNKSFQIFTQMQI 431

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487
            G+ P+  T  +IL  C   G     E +   V+K       +   +  +D+  K GK++
Sbjct: 432 EGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLK-TGFQFNVYVSSVLIDMYAKHGKLD 490

Query: 488 DACKV 492
            A K+
Sbjct: 491 HALKI 495



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/389 (27%), Positives = 180/389 (46%), Gaps = 40/389 (10%)

Query: 164 SVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQ 223
           S +    L+D Y        A+ VF++M IR+   W  + +  I  +       LFR M 
Sbjct: 96  SFYDGLKLIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRML 155

Query: 224 REGVKPTRVTLTIVLLACA-ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEA 282
            + V+       +VL  C+      R  + IH      GF+    +   L+ +Y +    
Sbjct: 156 TKNVEFDERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFK-NGF 214

Query: 283 LHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSS 342
           L  A+ +FE  K +D V W ++I G SQ+G   EAM LF ++              +LS+
Sbjct: 215 LSSAKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI--------------VLSA 260

Query: 343 CTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSW 402
           CT+  F   G  +H  ++K G + +  + NAL+ +YS+ G+++S+ QIF+ M+ RD VS+
Sbjct: 261 CTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSY 320

Query: 403 TTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAE-------- 454
            +LISG    GY   AL LF +M     +PD +TV ++LSAC   G +   +        
Sbjct: 321 NSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIK 380

Query: 455 -----------TLFNNVMKEKKIALAIEHYACY--VDLLGKSGKIEDACKVVSTMPMKPS 501
                      +L +  +K   I  A E + CY  +D L KS +I    ++   +P + +
Sbjct: 381 AGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFT 440

Query: 502 TRILSSLVSACRIHGRLEVAEMLAHQLIE 530
                S++  C   G  ++ E +  Q+++
Sbjct: 441 ---YPSILKTCTTLGATDLGEQIHTQVLK 466


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 182/547 (33%), Positives = 300/547 (54%), Gaps = 4/547 (0%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPY 91
           S++K CA A+     G  +H      G D++ + + +L +MYAK  +P  A ++FD MP 
Sbjct: 64  SLLKLCA-ARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRMPV 122

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMYLC-GFVLKAELLAGIISLCSQIGELELGRQ 150
           RD ++WN+++  + +NG    ++EM   M    G    +  L  ++  C+    L   R+
Sbjct: 123 RDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACRE 182

Query: 151 IHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQ 210
            HA  I  G  EL V V+TA+LD Y KC     A  VF+ M  +N VSW AMI G   + 
Sbjct: 183 AHAFAIRSGLEEL-VNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNG 241

Query: 211 NYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSA 270
           +    + LF  M  EGV  T V++   L AC EL  L  G  +H      G D +  +  
Sbjct: 242 DSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMN 301

Query: 271 ALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE 330
           AL+ MY +C   +  A  +F+    +  V W+++I G +Q+G   +A++LF+RM+LE ++
Sbjct: 302 ALITMYSKCKR-VDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVK 360

Query: 331 PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQI 390
           P+S TL++++ +    S       +H Y ++  L+ DV +  AL++MY+KCG +  +  +
Sbjct: 361 PDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARIL 420

Query: 391 FNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLV 450
           FN    R  ++W  +I GYG HG+G+ A++LF EM+  G+ P+  T L++LSAC+HAGLV
Sbjct: 421 FNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLV 480

Query: 451 KEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVS 510
            E    F ++ ++  +   +EHY   VDLLG++GK+++A   +  MPM P   +  +++ 
Sbjct: 481 DEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLG 540

Query: 511 ACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKS 570
           AC++H  +E+AE  A ++ E  P+    + LL+ + + +  W     V   M   GL K+
Sbjct: 541 ACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKT 600

Query: 571 YGFSRIE 577
            G+S I+
Sbjct: 601 PGWSIIQ 607



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 110/332 (33%), Positives = 188/332 (56%), Gaps = 3/332 (0%)

Query: 113 SLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALL 172
           +L  F  M   G          ++ LC+  G+L  GR +HA +   G  +     +TAL 
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARG-IDSEALAATALA 101

Query: 173 DLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQ-REGVKPTR 231
           ++Y+KC     A RVF++M +R+ V+W A+++G   +      +++   MQ  EG +P  
Sbjct: 102 NMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDS 161

Query: 232 VTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFE 291
           +TL  VL ACA  R L   +  H +A   G +   +++ A++  YC+C + +  AR++F+
Sbjct: 162 ITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGD-IRAARVVFD 220

Query: 292 RTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSH 351
               K+ V W+++I GY+Q+GD  EA+ LF+RM  E ++   V++LA L +C     L  
Sbjct: 221 WMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDE 280

Query: 352 GLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGF 411
           G+ VH  +++ GL+ +VS+ NAL+ MYSKC  +  +  +F+E+  R  VSW  +I G   
Sbjct: 281 GMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQ 340

Query: 412 HGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
           +G  E+A++LF  MQ   V+PD+ T+++++ A
Sbjct: 341 NGCSEDAVRLFTRMQLENVKPDSFTLVSVIPA 372



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/236 (34%), Positives = 130/236 (55%), Gaps = 2/236 (0%)

Query: 219 FRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCE 278
           F AM   G  P   T T +L  CA   DL  G+A+H      G D +   + AL +MY +
Sbjct: 47  FVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAK 106

Query: 279 CTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE-PNSVTLL 337
           C      AR +F+R  V+D V W++++ GY+++G    AM++  RM+ E  E P+S+TL+
Sbjct: 107 CRRPAD-ARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLV 165

Query: 338 AILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR 397
           ++L +C     L+     H + +++GL   V++  A+++ Y KCG I ++  +F+ M  +
Sbjct: 166 SVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTK 225

Query: 398 DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEA 453
           + VSW  +I GY  +G   EAL LF  M E GV+   ++VLA L AC   G + E 
Sbjct: 226 NSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEG 281



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 1/138 (0%)

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
           +R  +   DL  A+  F  M      P   T  ++L  C  +  L+ G  VH  +   G+
Sbjct: 31  LRASAARSDLPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGI 90

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
           + +     AL NMY+KC     + ++F+ M  RD V+W  L++GY  +G    A+++ + 
Sbjct: 91  DSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVR 150

Query: 425 MQ-ESGVEPDAITVLAIL 441
           MQ E G  PD+IT++++L
Sbjct: 151 MQEEEGERPDSITLVSVL 168


>gi|222629009|gb|EEE61141.1| hypothetical protein OsJ_15084 [Oryza sativa Japonica Group]
          Length = 897

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 192/559 (34%), Positives = 309/559 (55%), Gaps = 7/559 (1%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G   N+  + S ++AC         G  LH   +K+G    P + +SL SMY K    E 
Sbjct: 210 GARPNSRTMESGLEACG-VLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTED 268

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A  LF E+P +D +SW S+I  + + G   +++E+F  M   G      +++ +++    
Sbjct: 269 ARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGN 328

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
             ++  G+  HA  IV  +F  SV +  AL+ +Y+KC    IA  VF  +  R+  SW++
Sbjct: 329 DAKVRGGKTFHA-AIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSS 387

Query: 202 MISGCIDSQNYDTGIDLFRAMQ---REGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258
           M+     +      ++L+R MQ   ++  +    +L  ++ +C+ L  LR G++ H Y+ 
Sbjct: 388 MVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSI 447

Query: 259 CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAM 318
                 +  ++ AL+ MY  C      AR IF   K KDVV WS++I  YS  G   +A+
Sbjct: 448 KHLAGENSSVANALISMYGRCGN-FDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDAL 506

Query: 319 KLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMY 378
            L+ +M  E ++PNS TL++++SSC   + L HG  +H ++   GL  D+SI  AL++MY
Sbjct: 507 LLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMY 566

Query: 379 SKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
            KCG +  + ++F+ M  RD V+W  +ISGYG HG   +AL+LF  M+   V+P+++T L
Sbjct: 567 MKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFL 626

Query: 439 AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPM 498
           AILSAC HAGLV +   LF   M+E  +   ++HYAC VDLLGKSG +++A  VVS MP+
Sbjct: 627 AILSACCHAGLVDKGRELFTR-MEEYSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPI 685

Query: 499 KPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEV 558
           +P   I  +L+ AC++H   E+   +A +   ++PEN   Y L+S     +  W   E++
Sbjct: 686 EPDGGIWGTLLGACKMHDNFEMGLRVAKKAFASDPENDGYYILMSNSYGSAEKWNEIEKL 745

Query: 559 WRVMRAKGLSKSYGFSRIE 577
             +M+  G+ KS G+S I+
Sbjct: 746 RDMMKNHGVEKSIGWSTID 764



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 129/482 (26%), Positives = 243/482 (50%), Gaps = 18/482 (3%)

Query: 47  GLQLHCTALKSG---SDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINC 103
           G  +H  +++ G    D    +++SL+ MYA+      A +LFDEMP RD ++W ++I+ 
Sbjct: 126 GAAVHAYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISG 185

Query: 104 FTQNGFYVRSL----EMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDG 159
              NG     L     M R     G    +  +   +  C  +GEL +G  +H   +  G
Sbjct: 186 CVCNGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAG 245

Query: 160 SFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLF 219
                  VS+ L  +Y+KC     A  +F ++  ++ VSWT++I     + + +  ++LF
Sbjct: 246 VGHCPSVVSS-LFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELF 304

Query: 220 RAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCEC 279
             M+  G++P  V ++ +L        +R GK  H       F     +  AL+ MY +C
Sbjct: 305 LGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKC 364

Query: 280 TEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRL---ERIEPNSVTL 336
            + +  A  +F     +D   WSS++  Y ++G   + ++L+  M+    +  E ++ +L
Sbjct: 365 KQ-VDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSL 423

Query: 337 LAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA 396
           ++I+SSC+R   L  G   HCY +K     + S+ NAL++MY +CG+   + +IF  +  
Sbjct: 424 ISIISSCSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKT 483

Query: 397 RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETL 456
           +D V+W+ LIS Y   G+ ++AL L+ +M   GV+P++ T+++++S+C +   ++  E +
Sbjct: 484 KDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELI 543

Query: 457 FNNVMKEKKIALAIEHYAC--YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRI 514
            ++V   K + L  +   C   VD+  K G++  A K+  +M ++      + ++S   +
Sbjct: 544 HSHV---KDVGLECDLSICTALVDMYMKCGQLGIARKMFDSM-LERDVVTWNVMISGYGM 599

Query: 515 HG 516
           HG
Sbjct: 600 HG 601



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 111/383 (28%), Positives = 188/383 (49%), Gaps = 7/383 (1%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           LH  A+ SG    P  +  L+S Y+    P  A   F   P  D   WNS++    +   
Sbjct: 28  LHALAVTSGLSPRPDFAAKLVSAYSSAGLPALAALAFAASPCPDAFLWNSLLRSRHRASD 87

Query: 110 YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFE--LSVFV 167
           +  +L   R M   G          + S  +++G L +G  +HA  +  G  E   SV V
Sbjct: 88  FASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVHAYSVRFGLLEGDGSVAV 147

Query: 168 STALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE-- 225
           +++L+ +Y++C     A+R+F++M  R+ V+WTA+ISGC+ +     G+     M R   
Sbjct: 148 ASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAG 207

Query: 226 --GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEAL 283
             G +P   T+   L AC  L +L  G  +HG+    G      + ++L  MY +C ++ 
Sbjct: 208 DGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKC-DST 266

Query: 284 HPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC 343
             ARI+F     KD+V W+S+I  Y ++G   +A++LF  M    ++P+ V +  +L+  
Sbjct: 267 EDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGL 326

Query: 344 TRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWT 403
              + +  G   H  I++      V IGNAL++MY+KC  +  +  +F  +  RD  SW+
Sbjct: 327 GNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWS 386

Query: 404 TLISGYGFHGYGEEALQLFLEMQ 426
           +++  Y   G   + L+L+ EMQ
Sbjct: 387 SMVVAYCKAGLDLKCLELYREMQ 409



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 166/332 (50%), Gaps = 9/332 (2%)

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258
           W +++     + ++ + +   R M+  G +P+R T  +V  A AEL  L  G A+H Y+ 
Sbjct: 75  WNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVHAYSV 134

Query: 259 CCGF---DFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
             G    D    ++++L++MY  C       R +F+    +DVV W+++I G   +G   
Sbjct: 135 RFGLLEGDGSVAVASSLVYMYARCGSVRDAVR-LFDEMPERDVVAWTAVISGCVCNGQCG 193

Query: 316 EAMKLFSRMRLER----IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
           E +    RM          PNS T+ + L +C     LS G  +H + +KAG+    S+ 
Sbjct: 194 EGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVV 253

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
           ++L +MY+KC S   +  +F E+  +D VSWT+LI  Y   G+ E+A++LFL M+ESG++
Sbjct: 254 SSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQ 313

Query: 432 PDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACK 491
           PD + +  +L+   +   V+  +T F+  +  +    ++      + +  K  +++ A  
Sbjct: 314 PDEVVISCLLAGLGNDAKVRGGKT-FHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAAT 372

Query: 492 VVSTMPMKPSTRILSSLVSACRIHGRLEVAEM 523
           V   +  + +    S +V+ C+    L+  E+
Sbjct: 373 VFRMLHQRDTDSWSSMVVAYCKAGLDLKCLEL 404



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 82/159 (51%), Gaps = 7/159 (4%)

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVH 356
           D  +W+S++R   ++ D +  +    RMR     P+  T   + S+      L  G  VH
Sbjct: 71  DAFLWNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVH 130

Query: 357 CYIMKAGL---NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHG 413
            Y ++ GL   +  V++ ++L+ MY++CGS+  + ++F+EM  RD V+WT +ISG   +G
Sbjct: 131 AYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNG 190

Query: 414 YGEEALQLFLEMQES----GVEPDAITVLAILSACNHAG 448
              E L   + M  S    G  P++ T+ + L AC   G
Sbjct: 191 QCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLG 229



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 98/210 (46%), Gaps = 4/210 (1%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           +  L LY Q L   G+  N+A L SVI +CA     +H G  +H      G + D  I  
Sbjct: 503 KDALLLYDQML-TEGVKPNSATLVSVISSCANLAALEH-GELIHSHVKDVGLECDLSICT 560

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +L+ MY K  +   A ++FD M  RD ++WN +I+ +  +G  +++L++F  M       
Sbjct: 561 ALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKP 620

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
            +     I+S C   G ++ GR++    + + S E ++     ++DL  K  H   A  V
Sbjct: 621 NSLTFLAILSACCHAGLVDKGRELFTR-MEEYSLEPNLKHYACMVDLLGKSGHLQEAEDV 679

Query: 188 FEQMVIRNEVS-WTAMISGCIDSQNYDTGI 216
              M I  +   W  ++  C    N++ G+
Sbjct: 680 VSAMPIEPDGGIWGTLLGACKMHDNFEMGL 709


>gi|449435950|ref|XP_004135757.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Cucumis sativus]
          Length = 606

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 176/515 (34%), Positives = 284/515 (55%), Gaps = 4/515 (0%)

Query: 64  VISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC 123
           V + +LI  Y        A  LF+E+P RD ++W ++I  FT    Y ++  MF EM   
Sbjct: 44  VWATNLIKSYFDKGLTREACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRS 103

Query: 124 GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYS-KCHHWL 182
                A  ++ ++  C  +  L  G   H+L    G  + SV+V  ALLD+Y+  C    
Sbjct: 104 EVQPNAFTMSSVLKACKGMKALSCGALAHSLATKHG-IDRSVYVQNALLDMYAASCATMD 162

Query: 183 IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
            AL VF  + ++  VSWT +I+G     +  +G+  FR M  E V P   + +I   ACA
Sbjct: 163 DALSVFNDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACA 222

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
            +     GK IH      G   D  +  +++ MYC C       R   E T+ K+++ W+
Sbjct: 223 SISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTE-KNLITWN 281

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
           ++I GY +S D SE++ LF +M  E  +PN  T  +I ++C   + LS G  VH  I++ 
Sbjct: 282 TLIAGYERS-DSSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRR 340

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
           G + +V++ N+L++MY+KCGSI+ SH++F +M  RD VSWTT++ GYG HGYG+EA++LF
Sbjct: 341 GFDKNVALINSLIDMYAKCGSISDSHKLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLF 400

Query: 423 LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGK 482
            EM +SG++PD I  + +L  C+HAGLV +    F +++++  I    E Y C VDLLG+
Sbjct: 401 DEMVQSGIQPDRIVFMGVLCGCSHAGLVDKGLKYFRSMLEDYNINPDQEIYRCVVDLLGR 460

Query: 483 SGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLL 542
           +G++E+A ++V  MP +P   +  +L+ AC+ +    +  + A ++++  P  A  Y LL
Sbjct: 461 AGRVEEAFQLVENMPFEPDESVWGALLGACKAYKLSNLGNLAAQRVLDRRPNMAGTYLLL 520

Query: 543 SMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           S + +  G W    ++ ++M+     K  G S IE
Sbjct: 521 SKIYAAEGKWGEFAKMRKLMKGMNKKKEVGKSWIE 555



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 115/428 (26%), Positives = 197/428 (46%), Gaps = 11/428 (2%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           Y Q   ++ + L  S +  N   + SV+KAC         G   H  A K G D    + 
Sbjct: 90  YHQAWTMFSEMLR-SEVQPNAFTMSSVLKACK-GMKALSCGALAHSLATKHGIDRSVYVQ 147

Query: 67  NSLISMY-AKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
           N+L+ MY A  +  + A  +F+++P +  +SW ++I  FT  G     L  FR+M L   
Sbjct: 148 NALLDMYAASCATMDDALSVFNDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDV 207

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
              +   +     C+ I     G+QIHA V   G       V  ++LD+Y +C++   A 
Sbjct: 208 GPNSFSFSIAARACASISSYSCGKQIHAAVTKYG-LHCDAPVMNSILDMYCRCNYLCDAK 266

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
           R F ++  +N ++W  +I+G   S + ++ + LF  M  EG KP   T T +  ACA L 
Sbjct: 267 RCFGELTEKNLITWNTLIAGYERSDSSES-LSLFFQMGSEGYKPNCFTFTSITAACANLA 325

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
            L  G+ +HG     GFD +  L  +L+ MY +C  ++  +  +F     +D+V W++++
Sbjct: 326 VLSCGQQVHGGIVRRGFDKNVALINSLIDMYAKCG-SISDSHKLFCDMPGRDLVSWTTMM 384

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA-GL 364
            GY   G   EA+KLF  M    I+P+ +  + +L  C+    +  GL     +++   +
Sbjct: 385 IGYGAHGYGKEAVKLFDEMVQSGIQPDRIVFMGVLCGCSHAGLVDKGLKYFRSMLEDYNI 444

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMA-ARDFVSWTTLIS---GYGFHGYGEEALQ 420
           N D  I   ++++  + G +  + Q+   M    D   W  L+     Y     G  A Q
Sbjct: 445 NPDQEIYRCVVDLLGRAGRVEEAFQLVENMPFEPDESVWGALLGACKAYKLSNLGNLAAQ 504

Query: 421 LFLEMQES 428
             L+ + +
Sbjct: 505 RVLDRRPN 512


>gi|449508637|ref|XP_004163369.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Cucumis sativus]
          Length = 594

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 176/515 (34%), Positives = 284/515 (55%), Gaps = 4/515 (0%)

Query: 64  VISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC 123
           V + +LI  Y        A  LF+E+P RD ++W ++I  FT    Y ++  MF EM   
Sbjct: 44  VWATNLIKSYFDKGLTREACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRS 103

Query: 124 GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYS-KCHHWL 182
                A  ++ ++  C  +  L  G   H+L    G  + SV+V  ALLD+Y+  C    
Sbjct: 104 EVQPNAFTMSSVLKACKGMKALSCGALAHSLATKHG-IDRSVYVQNALLDMYAASCATMD 162

Query: 183 IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
            AL VF  + ++  VSWT +I+G     +  +G+  FR M  E V P   + +I   ACA
Sbjct: 163 DALSVFNDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACA 222

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
            +     GK IH      G   D  +  +++ MYC C       R   E T+ K+++ W+
Sbjct: 223 SISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTE-KNLITWN 281

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
           ++I GY +S D SE++ LF +M  E  +PN  T  +I ++C   + LS G  VH  I++ 
Sbjct: 282 TLIAGYERS-DSSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRR 340

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
           G + +V++ N+L++MY+KCGSI+ SH++F +M  RD VSWTT++ GYG HGYG+EA++LF
Sbjct: 341 GFDKNVALINSLIDMYAKCGSISDSHKLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLF 400

Query: 423 LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGK 482
            EM +SG++PD I  + +L  C+HAGLV +    F +++++  I    E Y C VDLLG+
Sbjct: 401 DEMVQSGIQPDRIVFMGVLCGCSHAGLVDKGLKYFRSMLEDYNINPDQEIYRCVVDLLGR 460

Query: 483 SGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLL 542
           +G++E+A ++V  MP +P   +  +L+ AC+ +    +  + A ++++  P  A  Y LL
Sbjct: 461 AGRVEEAFQLVENMPFEPDESVWGALLGACKAYKLSNLGNLAAQRVLDRRPNMAGTYLLL 520

Query: 543 SMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           S + +  G W    ++ ++M+     K  G S IE
Sbjct: 521 SKIYAAEGKWGEFAKMRKLMKGMNKKKEVGKSWIE 555



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 115/428 (26%), Positives = 197/428 (46%), Gaps = 11/428 (2%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           Y Q   ++ + L  S +  N   + SV+KAC         G   H  A K G D    + 
Sbjct: 90  YHQAWTMFSEMLR-SEVQPNAFTMSSVLKACK-GMKALSCGALAHSLATKHGIDRSVYVQ 147

Query: 67  NSLISMY-AKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
           N+L+ MY A  +  + A  +F+++P +  +SW ++I  FT  G     L  FR+M L   
Sbjct: 148 NALLDMYAASCATMDDALSVFNDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDV 207

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
              +   +     C+ I     G+QIHA V   G       V  ++LD+Y +C++   A 
Sbjct: 208 GPNSFSFSIAARACASISSYSCGKQIHAAVTKYG-LHCDAPVMNSILDMYCRCNYLCDAK 266

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
           R F ++  +N ++W  +I+G   S + ++ + LF  M  EG KP   T T +  ACA L 
Sbjct: 267 RCFGELTEKNLITWNTLIAGYERSDSSES-LSLFFQMGSEGYKPNCFTFTSITAACANLA 325

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
            L  G+ +HG     GFD +  L  +L+ MY +C  ++  +  +F     +D+V W++++
Sbjct: 326 VLSCGQQVHGGIVRRGFDKNVALINSLIDMYAKCG-SISDSHKLFCDMPGRDLVSWTTMM 384

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA-GL 364
            GY   G   EA+KLF  M    I+P+ +  + +L  C+    +  GL     +++   +
Sbjct: 385 IGYGAHGYGKEAVKLFDEMVQSGIQPDRIVFMGVLCGCSHAGLVDKGLKYFRSMLEDYNI 444

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMA-ARDFVSWTTLIS---GYGFHGYGEEALQ 420
           N D  I   ++++  + G +  + Q+   M    D   W  L+     Y     G  A Q
Sbjct: 445 NPDQEIYRCVVDLLGRAGRVEEAFQLVENMPFEPDESVWGALLGACKAYKLSNLGNLAAQ 504

Query: 421 LFLEMQES 428
             L+ + +
Sbjct: 505 RVLDRRPN 512


>gi|302791495|ref|XP_002977514.1| hypothetical protein SELMODRAFT_107304 [Selaginella moellendorffii]
 gi|300154884|gb|EFJ21518.1| hypothetical protein SELMODRAFT_107304 [Selaginella moellendorffii]
          Length = 673

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 178/529 (33%), Positives = 302/529 (57%), Gaps = 10/529 (1%)

Query: 21  SGLYSNTAILPSVIKACAYA--QTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSK 78
            G   N  I   +++ACA +  ++ +    ++    + +G DAD  ++ +LIS  A+   
Sbjct: 4   DGCRPNAVIFTRLLEACARSPEKSDRSRLAEIQFRVVATGFDADVTVATALISALARCGD 63

Query: 79  PESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISL 138
            E A + FD +P ++ +SWNS+I    ++G + R+LE++R M   G  +K   ++ I +L
Sbjct: 64  LEGAREAFDRIPAKNVVSWNSMIAALNEHGHFARALEIYRRMEPEG--VKPSDISYIHAL 121

Query: 139 CSQIG--ELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
           CS  G  +LE G+ IH  V  DG F+  VFV  AL+++YSKC    +A   FE++  ++ 
Sbjct: 122 CSCSGLRDLEQGKSIHDRVATDG-FDTQVFVGNALVNMYSKCRRLDLAREAFERIDSKDV 180

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAM-QREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
           VSW +MI+        D  ++ +R M   E ++PT++TL   L A   LR   + K +  
Sbjct: 181 VSWNSMIAAHSQLGGSDEALETYRRMIGEERLEPTKITLVHALGAALSLRSAGDTKLLQE 240

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
            A   G + D  + +AL+    +C   L  AR +F+R + ++VV WS +I   ++ G   
Sbjct: 241 DAIRLGLEGDLLVGSALVSALGKCG-CLDQARAVFDRMERRNVVSWSGLIAALAEHGRGR 299

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           +A++LF RM L+ I+PN VTLL++L +C     ++ G   H  +   G   + ++ NAL+
Sbjct: 300 DAIELFHRMDLDGIQPNEVTLLSVLEACASTGAIAEGRRTHARVSGCGFEAETNVANALV 359

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           NMY KCG + S+  +F+ M  R+ VSWT +++GY  HG+ EEA ++F  M   G++P+ I
Sbjct: 360 NMYGKCGHLGSARTVFDAMTWRNVVSWTAMLAGYAHHGHTEEARRVFKAMALEGIQPNVI 419

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           T +++L  C+HAG+V +    F+ ++ +  I    EHY C +DLLG++G +E+A +++ T
Sbjct: 420 TFVSVLFNCSHAGVVSDGLEQFHIMVGDFGIVPVTEHYGCVIDLLGRAGWLEEAEELLRT 479

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE-AEPENAANYTLLS 543
           MP++P     +SL+ AC++H   + A+ +A    + A P  +A Y LLS
Sbjct: 480 MPVEPDKAAWNSLLGACKVHSHTDRAKRIAKLACDLALPFASAPYVLLS 528



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 78/143 (54%), Gaps = 3/143 (2%)

Query: 324 MRLERIEPNSVTLLAILSSCTR---QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
           M L+   PN+V    +L +C R   +S  S    +   ++  G + DV++  AL++  ++
Sbjct: 1   MELDGCRPNAVIFTRLLEACARSPEKSDRSRLAEIQFRVVATGFDADVTVATALISALAR 60

Query: 381 CGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
           CG +  + + F+ + A++ VSW ++I+    HG+   AL+++  M+  GV+P  I+ +  
Sbjct: 61  CGDLEGAREAFDRIPAKNVVSWNSMIAALNEHGHFARALEIYRRMEPEGVKPSDISYIHA 120

Query: 441 LSACNHAGLVKEAETLFNNVMKE 463
           L +C+    +++ +++ + V  +
Sbjct: 121 LCSCSGLRDLEQGKSIHDRVATD 143


>gi|147797310|emb|CAN76007.1| hypothetical protein VITISV_013341 [Vitis vinifera]
          Length = 666

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 190/580 (32%), Positives = 317/580 (54%), Gaps = 51/580 (8%)

Query: 50  LHCTALKSG-SDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           LH  A K G   +DP ++N L+++Y++   P+SA ++FDE+P      WN++I+C+ +  
Sbjct: 59  LHADAAKRGFVSSDPFVTNDLLTVYSRCGSPQSARKMFDEIPVPGPFCWNTMISCYFRES 118

Query: 109 FYVRSLEMF---REMYLCGFVLKAELLAG------------------------------- 134
               + E+F   RE +L   V  + ++AG                               
Sbjct: 119 HCGAARELFDRMREAHLANDVTWSAVIAGYAQNSRPKDALFVFKEMRGECDEMGSPLSPM 178

Query: 135 ------IISLCSQIGELELGRQIHALVIVDGSF-ELSVFVSTALLDLYSKCHHWLIALRV 187
                 + S C Q+ ++ LG QIH  V+   S+ E   FV + ++D+Y KC    +A  V
Sbjct: 179 SHTITSVFSACGQLRDVILGEQIHGYVMKISSYVENDAFVGSVVVDMYGKCGFEELARFV 238

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F  +V +  V WTA+I+  + ++     I++FR M  EG++P  VTL+ ++ AC+++ DL
Sbjct: 239 FYSIVDKCVVVWTALIASYVCNECPCPAIEVFREMIYEGMEPNCVTLSSLISACSQIPDL 298

Query: 248 RNGKAIHGY--AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV----KDVVIW 301
             GK IHG+          D  +S +L+ MY +C   ++  RI FE+ K         +W
Sbjct: 299 MLGKEIHGFITRRRAATTPDVFISTSLIDMYGKCNYMVYGHRI-FEKDKTYPRCNTTALW 357

Query: 302 SSIIRGYSQSGDLSEAMKLF-SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           ++ I GY ++  +S+A  +F S    E I PN+VT+  +L  C R S L  G  +HCY +
Sbjct: 358 NATIAGYMENNFVSDAWDVFRSITHGEGINPNTVTMSIVLPLCARSSQLLSGKEIHCYAL 417

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA-ARDFVSWTTLISGYGFHGYGEEAL 419
           + GL+ ++ + N L++MYSKCG +  +   FN M   ++ +SWT++I G+G HG GE A+
Sbjct: 418 RNGLDQEIFVSNGLIDMYSKCGKLKLAENQFNRMMNEKNRISWTSMIDGHGIHGDGEGAI 477

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479
           ++F  M    V+PD IT +A++SAC+HAGL+++    F  + +E  I    E+Y   VDL
Sbjct: 478 RVFESMVREEVKPDHITFVALISACSHAGLLEQGLRYFEEMSREYGIVPVEENYGTVVDL 537

Query: 480 LGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANY 539
           L ++G+ ++A  ++  MP+KP   +  +L+ ACRIHG ++ AE+ AH L + EP+++   
Sbjct: 538 LARAGRFKEARDLIERMPIKPGANVWGALLGACRIHGNVKEAELAAHCLQKLEPKDSGFQ 597

Query: 540 TLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIENE 579
            LL+ +  E+G    AE++   MR  G+ K  GFS +E +
Sbjct: 598 KLLASIYLEAGRRENAEDLRSQMREMGMEKRQGFSWLETK 637



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 120/431 (27%), Positives = 208/431 (48%), Gaps = 26/431 (6%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGS--DADPVISNSLISMYAKFSK 78
           S L   +  + SV  AC   +     G Q+H   +K  S  + D  + + ++ MY K   
Sbjct: 173 SPLSPMSHTITSVFSACGQLRD-VILGEQIHGYVMKISSYVENDAFVGSVVVDMYGKCGF 231

Query: 79  PESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISL 138
            E A  +F  +  +  + W ++I  +  N     ++E+FREM   G       L+ +IS 
Sbjct: 232 EELARFVFYSIVDKCVVVWTALIASYVCNECPCPAIEVFREMIYEGMEPNCVTLSSLISA 291

Query: 139 CSQIGELELGRQIHALVI-VDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197
           CSQI +L LG++IH  +     +    VF+ST+L+D+Y KC++ +   R+FE+       
Sbjct: 292 CSQIPDLMLGKEIHGFITRRRAATTPDVFISTSLIDMYGKCNYMVYGHRIFEKDKTYPRC 351

Query: 198 S----WTAMISGCIDSQNYDTGIDLFRAMQR-EGVKPTRVTLTIVLLACAELRDLRNGKA 252
           +    W A I+G +++       D+FR++   EG+ P  VT++IVL  CA    L +GK 
Sbjct: 352 NTTALWNATIAGYMENNFVSDAWDVFRSITHGEGINPNTVTMSIVLPLCARSSQLLSGKE 411

Query: 253 IHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFER-TKVKDVVIWSSIIRGYSQS 311
           IH YA   G D +  +S  L+ MY +C + L  A   F R    K+ + W+S+I G+   
Sbjct: 412 IHCYALRNGLDQEIFVSNGLIDMYSKCGK-LKLAENQFNRMMNEKNRISWTSMIDGHGIH 470

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV--- 368
           GD   A+++F  M  E ++P+ +T +A++S+C+    L  GL    Y  +    + +   
Sbjct: 471 GDGEGAIRVFESMVREEVKPDHITFVALISACSHAGLLEQGLR---YFEEMSREYGIVPV 527

Query: 369 -SIGNALMNMYSKCGSITSSHQIFNEMAARDFVS-WTTLISGYGFHGYGEEA------LQ 420
                 ++++ ++ G    +  +   M  +   + W  L+     HG  +EA      LQ
Sbjct: 528 EENYGTVVDLLARAGRFKEARDLIERMPIKPGANVWGALLGACRIHGNVKEAELAAHCLQ 587

Query: 421 LFLEMQESGVE 431
             LE ++SG +
Sbjct: 588 K-LEPKDSGFQ 597



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 117/273 (42%), Gaps = 45/273 (16%)

Query: 218 LFRAMQREGVKPTRVTLTIVLLACAELR-DLRNGKAIHGYAYCCGF-DFDHHLSAALMHM 275
            +  ++++G +P   T + +L   +  +  L + + +H  A   GF   D  ++  L+ +
Sbjct: 23  FYHQIRKQGFEPNSFTFSSLLKCLSSSQSPLLHAQPLHADAAKRGFVSSDPFVTNDLLTV 82

Query: 276 YCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER------- 328
           Y  C      AR +F+   V     W+++I  Y +      A +LF RMR          
Sbjct: 83  YSRCGSP-QSARKMFDEIPVPGPFCWNTMISCYFRESHCGAARELFDRMREAHLANDVTW 141

Query: 329 ---------------------------------IEPNSVTLLAILSSCTRQSFLSHGLGV 355
                                            + P S T+ ++ S+C +   +  G  +
Sbjct: 142 SAVIAGYAQNSRPKDALFVFKEMRGECDEMGSPLSPMSHTITSVFSACGQLRDVILGEQI 201

Query: 356 HCYIMKAG--LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHG 413
           H Y+MK    +  D  +G+ +++MY KCG    +  +F  +  +  V WT LI+ Y  + 
Sbjct: 202 HGYVMKISSYVENDAFVGSVVVDMYGKCGFEELARFVFYSIVDKCVVVWTALIASYVCNE 261

Query: 414 YGEEALQLFLEMQESGVEPDAITVLAILSACNH 446
               A+++F EM   G+EP+ +T+ +++SAC+ 
Sbjct: 262 CPCPAIEVFREMIYEGMEPNCVTLSSLISACSQ 294



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 98/214 (45%), Gaps = 17/214 (7%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           +  +F      +++   H  G+  NT  +  V+  CA + +    G ++HC AL++G D 
Sbjct: 365 MENNFVSDAWDVFRSITHGEGINPNTVTMSIVLPLCARS-SQLLSGKEIHCYALRNGLDQ 423

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDE-MPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
           +  +SN LI MY+K  K + A   F+  M  ++ ISW S+I+    +G    ++ +F  M
Sbjct: 424 EIFVSNGLIDMYSKCGKLKLAENQFNRMMNEKNRISWTSMIDGHGIHGDGEGAIRVFESM 483

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQI-------HALVIVDGSFELSVFVSTALLD 173
                         +IS CS  G LE G +        + +V V+ ++         ++D
Sbjct: 484 VREEVKPDHITFVALISACSHAGLLEQGLRYFEEMSREYGIVPVEENY-------GTVVD 536

Query: 174 LYSKCHHWLIALRVFEQMVIRNEVS-WTAMISGC 206
           L ++   +  A  + E+M I+   + W A++  C
Sbjct: 537 LLARAGRFKEARDLIERMPIKPGANVWGALLGAC 570



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 117/285 (41%), Gaps = 83/285 (29%)

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF-LSHGLGVHCYIMKAG-LN 365
           YS+ G   E    + ++R +  EPNS T  ++L   +     L H   +H    K G ++
Sbjct: 11  YSEQGKWRELTAFYHQIRKQGFEPNSFTFSSLLKCLSSSQSPLLHAQPLHADAAKRGFVS 70

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEM----------------------AARDF---- 399
            D  + N L+ +YS+CGS  S+ ++F+E+                      AAR+     
Sbjct: 71  SDPFVTNDLLTVYSRCGSPQSARKMFDEIPVPGPFCWNTMISCYFRESHCGAARELFDRM 130

Query: 400 --------VSWTTLISGYGFHGYGEEALQLFLEMQ------ESGVEPDAITVLAILSACN 445
                   V+W+ +I+GY  +   ++AL +F EM+       S + P + T+ ++ SAC 
Sbjct: 131 REAHLANDVTWSAVIAGYAQNSRPKDALFVFKEMRGECDEMGSPLSPMSHTITSVFSACG 190

Query: 446 HAGLVKEAETLFNNVMKEKKIALAIEHYA----CYVDLLGKSG----------KIEDACK 491
               V   E +   VM   KI+  +E+ A      VD+ GK G           I D C 
Sbjct: 191 QLRDVILGEQIHGYVM---KISSYVENDAFVGSVVVDMYGKCGFEELARFVFYSIVDKCV 247

Query: 492 VVSTM------------------------PMKPSTRILSSLVSAC 512
           VV T                          M+P+   LSSL+SAC
Sbjct: 248 VVWTALIASYVCNECPCPAIEVFREMIYEGMEPNCVTLSSLISAC 292


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 184/558 (32%), Positives = 299/558 (53%), Gaps = 7/558 (1%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G  ++   L SV++ C+     Q  G  +H   +K+G + +  +   L+ MYAK      
Sbjct: 157 GWKASQFTLGSVLRVCSSLGLIQT-GEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSE 215

Query: 82  AYQLFD--EMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLC 139
           A  LF   E   ++ + W +++  + QNG   +++E FR M+  G          I++ C
Sbjct: 216 AEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTAC 275

Query: 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSW 199
           S +     G Q+H  ++  G F  +V+V +AL+D+Y+KC     A  + E M   + VSW
Sbjct: 276 SSVLARCFGEQVHGFIVKSG-FGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSW 334

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
            +++ G +     +  + LF+ M    +K    T   VL  C  +    N K++HG    
Sbjct: 335 NSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCC--VVGSINPKSVHGLIIK 392

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
            GF+    +S AL+ MY + T  +  A  +FE+   KDV+ W+S++ GY+Q+    E++K
Sbjct: 393 TGFENYKLVSNALVDMYAK-TGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLK 451

Query: 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           +F  MR+  + P+   + +ILS+C   + L  G  VH   +K+GL +  S+ N+L+ MY+
Sbjct: 452 IFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYA 511

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           KCG +  +  IF  M  +D ++WT +I GY  +G G  +L+ +  M  SG  PD IT + 
Sbjct: 512 KCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIG 571

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           +L AC+HAGLV E    F  + K   I    EHYAC +DL G+SGK+++A +++  M +K
Sbjct: 572 LLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVK 631

Query: 500 PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVW 559
           P   +  SL+SACR+H  LE+AE  A  L E EP NA  Y +LS + S S  W    ++ 
Sbjct: 632 PDATVWKSLLSACRVHENLELAERAATNLFELEPMNAMPYVMLSNMYSASRKWNDVAKIR 691

Query: 560 RVMRAKGLSKSYGFSRIE 577
           ++M++KG+ K  G S +E
Sbjct: 692 KLMKSKGIVKEPGCSWLE 709



 Score =  218 bits (554), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 134/467 (28%), Positives = 243/467 (52%), Gaps = 38/467 (8%)

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT-------------------- 105
           +N L++  +K  +   A +LFD+MP +D  SWN++I+ +                     
Sbjct: 68  TNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSS 127

Query: 106 -----------QNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHAL 154
                      + G  V + ++FR M L G+      L  ++ +CS +G ++ G  IH  
Sbjct: 128 ITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGF 187

Query: 155 VIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI--RNEVSWTAMISGCIDSQNY 212
           V+ +G FE +VFV T L+D+Y+KC     A  +F+ +    +N V WTAM++G   + + 
Sbjct: 188 VVKNG-FEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDG 246

Query: 213 DTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAAL 272
              ++ FR M  +GV+  + T   +L AC+ +     G+ +HG+    GF  + ++ +AL
Sbjct: 247 YKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSAL 306

Query: 273 MHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPN 332
           + MY +C + L  A+ + E  +  DVV W+S++ G+ + G   EA++LF  M    ++ +
Sbjct: 307 VDMYAKCGD-LKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKID 365

Query: 333 SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFN 392
             T  ++L+ C   S   +   VH  I+K G      + NAL++MY+K G +  ++ +F 
Sbjct: 366 DYTFPSVLNCCVVGSI--NPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFE 423

Query: 393 EMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKE 452
           +M  +D +SWT+L++GY  +   EE+L++F +M+ +GV PD   V +ILSAC    L++ 
Sbjct: 424 KMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEF 483

Query: 453 AETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
            + +  + +K   +  +   Y   V +  K G ++DA  +  +M +K
Sbjct: 484 GKQVHLDFIKS-GLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVK 529



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 205/400 (51%), Gaps = 13/400 (3%)

Query: 18  LHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFS 77
           +H  G+  N    P+++ AC+ +   + FG Q+H   +KSG  ++  + ++L+ MYAK  
Sbjct: 256 MHAQGVECNQYTFPTILTACS-SVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCG 314

Query: 78  KPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS 137
             ++A  + + M   D +SWNS++  F ++G    +L +F+ M+     +       +++
Sbjct: 315 DLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLN 374

Query: 138 LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197
            C  +G +   + +H L+I  G FE    VS AL+D+Y+K      A  VFE+M+ ++ +
Sbjct: 375 CCV-VGSIN-PKSVHGLIIKTG-FENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVI 431

Query: 198 SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
           SWT++++G   + +++  + +F  M+  GV P +  +  +L ACAEL  L  GK +H   
Sbjct: 432 SWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDF 491

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
              G  +   +  +L+ MY +C   L  A  IF   +VKDV+ W++II GY+Q+G    +
Sbjct: 492 IKSGLRWSQSVYNSLVAMYAKCG-CLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNS 550

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN----A 373
           +K +  M      P+ +T + +L +C+    +  G     Y  +    + +  G      
Sbjct: 551 LKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRK---YFQQMNKVYGIKPGPEHYAC 607

Query: 374 LMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFH 412
           +++++ + G +  + Q+ ++M  + D   W +L+S    H
Sbjct: 608 MIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVH 647


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 185/571 (32%), Positives = 312/571 (54%), Gaps = 6/571 (1%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           +++ L+LY + L    +  N    PSV+K CA        G ++H   ++ G ++D  + 
Sbjct: 179 FDEALNLYHRMLWAE-IRPNVYTFPSVLKTCAGVSDIAR-GKEIHAHVIRFGFESDVDVG 236

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           N+LI+MY K     +A  LFD+MP RD ISWN++I+ + +NG  +  LE+F  M      
Sbjct: 237 NALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVD 296

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
                +  + S C  +    LGR +H  V V   F   + ++ +L+ +YS       A  
Sbjct: 297 PDLITMTTVASACELLDNERLGRGVHGYV-VKSEFGGDISMNNSLIQMYSSLGRLEEAET 355

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VF +M  ++ VSWTAMI+  +  +     ++ ++ M+ EG+ P  +TL  VL ACA +  
Sbjct: 356 VFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGH 415

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L  G  +H  A   G      +S +L+ MY +C + +  A  +F     K+VV W+S+I 
Sbjct: 416 LDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKC-KCVDNALEVFRNISGKNVVSWTSLIL 474

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           G   +    EA+  F +M+ E ++PNSVTL+++LS+C R   L  G  +H + ++ G+ F
Sbjct: 475 GLRINNRSFEALLFFRQMK-ESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGF 533

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           D  + NA+++MY +CG    +   FN    +D  +W  L++GY   G  + A++LF +M 
Sbjct: 534 DGFLPNAILDMYVRCGRKVPALNQFNSQK-KDVTAWNILLTGYAQQGQAKLAVELFDKML 592

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
           E  + PD IT +++L AC+ +G+V E    FN +  +  +   ++HYAC VD+LG++G++
Sbjct: 593 ELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQL 652

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546
           +DA   +  MP++P   I  +L++ACRIH  +E+ E+ A ++ E + ++   Y LL  + 
Sbjct: 653 DDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLY 712

Query: 547 SESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +  GNW    +V  +MR +GLS   G S +E
Sbjct: 713 AGCGNWDKVSKVRSLMRERGLSADPGCSWVE 743



 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 143/505 (28%), Positives = 262/505 (51%), Gaps = 13/505 (2%)

Query: 65  ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG 124
           + N+L+SM+ +F     A+ +F +M  RD  SWN ++  + + G +  +L ++  M    
Sbjct: 134 LGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAE 193

Query: 125 FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
                     ++  C+ + ++  G++IHA VI  G FE  V V  AL+ +Y KC     A
Sbjct: 194 IRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFG-FESDVDVGNALITMYVKCGDISNA 252

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
             +F++M  R+ +SW AMISG  ++     G++LF  M+   V P  +T+T V  AC  L
Sbjct: 253 RMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELL 312

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
            + R G+ +HGY     F  D  ++ +L+ MY      L  A  +F R + KDVV W+++
Sbjct: 313 DNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGR-LEEAETVFSRMESKDVVSWTAM 371

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
           I          +A++ +  M LE I P+ +TL+++LS+C     L  G+ +H   +K GL
Sbjct: 372 IASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGL 431

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
              V + N+L++MYSKC  + ++ ++F  ++ ++ VSWT+LI G   +    EAL  F +
Sbjct: 432 VSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQ 491

Query: 425 MQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGK 482
           M+ES ++P+++T++++LSAC   G +   + +  + +   +  +  + +     +D+  +
Sbjct: 492 MKES-MKPNSVTLISVLSACARIGALMRGKEIHAHAL---RTGVGFDGFLPNAILDMYVR 547

Query: 483 SGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE--PENAANYT 540
            G+   A    ++   K      + L++     G+ ++A  L  +++E E  P+     +
Sbjct: 548 CGRKVPALNQFNS--QKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFIS 605

Query: 541 LLSMVCSESGNWLGAEEVWRVMRAK 565
           LL   CS+SG      E + +M+ K
Sbjct: 606 LLC-ACSKSGMVTEGLEYFNIMKNK 629



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 120/440 (27%), Positives = 220/440 (50%), Gaps = 8/440 (1%)

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           ++ LC      + G +++ LV    S  L V +  ALL ++ +  + L A  VF +M  R
Sbjct: 103 LLRLCEWRRAPDEGSRVYELVSSSKSC-LCVRLGNALLSMFVRFGNLLDAWYVFGKMSER 161

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
           +  SW  ++ G   +  +D  ++L+  M    ++P   T   VL  CA + D+  GK IH
Sbjct: 162 DVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIH 221

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
            +    GF+ D  +  AL+ MY +C + +  AR++F++   +D + W+++I GY ++G  
Sbjct: 222 AHVIRFGFESDVDVGNALITMYVKCGD-ISNARMLFDKMPKRDRISWNAMISGYFENGGG 280

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
            E ++LFS MR   ++P+ +T+  + S+C        G GVH Y++K+    D+S+ N+L
Sbjct: 281 LEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSL 340

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           + MYS  G +  +  +F+ M ++D VSWT +I+    H    +A++ +  M+  G+ PD 
Sbjct: 341 IQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDE 400

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS 494
           IT++++LSAC   G +     L    +K   ++  I   +  +D+  K   +++A +V  
Sbjct: 401 ITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNS-LIDMYSKCKCVDNALEVFR 459

Query: 495 TMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLG 554
            +  K      +SL+   RI+ R   A +   Q+ E+   N+     +   C+  G  + 
Sbjct: 460 NISGKNVVS-WTSLILGLRINNRSFEALLFFRQMKESMKPNSVTLISVLSACARIGALMR 518

Query: 555 AEEVWRVMRAKGLSKSYGFS 574
            +E+     A  L    GF 
Sbjct: 519 GKEI----HAHALRTGVGFD 534



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 88/191 (46%), Gaps = 7/191 (3%)

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
           G+L +AMK    M   RIE      +A+L  C  +     G  V+  +  +     V +G
Sbjct: 76  GNLEQAMKRLESMLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLG 135

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
           NAL++M+ + G++  +  +F +M+ RD  SW  L+ GY   G  +EAL L+  M  + + 
Sbjct: 136 NALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIR 195

Query: 432 PDAITVLAILSACNHAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLLGKSGKIED 488
           P+  T  ++L  C     +   + +  +V++   E  + +       YV    K G I +
Sbjct: 196 PNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYV----KCGDISN 251

Query: 489 ACKVVSTMPMK 499
           A  +   MP +
Sbjct: 252 ARMLFDKMPKR 262


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 196/576 (34%), Positives = 316/576 (54%), Gaps = 21/576 (3%)

Query: 9   QTLH-LYKQELHPSGLY-SNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           ++LH +Y + L PS  Y SN  IL  +   C    T  H   Q H        + +    
Sbjct: 28  KSLHTIYLKSLIPSSTYLSNHFIL--LYSKCNLLTTAHHAFNQTH--------EPNVFSF 77

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           N+LI+ YAK S    A+ LFD++P  D +S+N++IN +   G  + +L +F EM   G V
Sbjct: 78  NALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMREMGLV 137

Query: 127 LKAELLAGIISLC-SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
           +     +G+I+ C + +G   L RQ+H+L    G F+  V V  +LL  YSK      A 
Sbjct: 138 MDGFTFSGVITACCNHVG---LIRQLHSLAFSSG-FDSYVSVKNSLLTYYSKNGILEEAE 193

Query: 186 RVFEQM--VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
            VF  M   +R+EVSW +MI      +     + L+R M   G +    TL  VL   + 
Sbjct: 194 MVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSC 253

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
           + DL  G   H  A   GF+ + H+ + L+ MY +C   +  +R +FE     D+V+W++
Sbjct: 254 VEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNT 313

Query: 304 IIRGYSQSGDLS-EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
           +I GYSQ+ +LS EA++ F +M+     P+  + +  +S+C+  S  S G   H   MK+
Sbjct: 314 MISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMKS 373

Query: 363 GLNFD-VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
            +  + +S+ NAL+ MYSKCG++  + ++F  M   + V+  ++I+GY  HG G E+L L
Sbjct: 374 EIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTESLNL 433

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
           F +M  + + P +IT+++ILSAC H G V+E +  FN +     I    EHY+C +DLLG
Sbjct: 434 FEQMLAASIAPTSITLVSILSACAHTGRVEEGKKYFNMMKDIFGIEPEAEHYSCMIDLLG 493

Query: 482 KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTL 541
           ++GK+ +A +++ TMP  P +   ++L+ ACR +G +E+AE  A+Q ++ EP NA  Y +
Sbjct: 494 RAGKLSEAERLIDTMPFSPGSAAWAALLGACRKYGNMELAEKAANQFLQLEPTNAVPYIM 553

Query: 542 LSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           L+ + S +  W  A  + ++MR +G+ K  G S IE
Sbjct: 554 LASMYSAARKWEEAARIRKLMRDRGIRKKPGCSWIE 589



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 65/150 (43%), Gaps = 32/150 (21%)

Query: 339 ILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFN------ 392
           IL SC     L  G  +H   +K+ +     + N  + +YSKC  +T++H  FN      
Sbjct: 14  ILKSCIANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTTAHHAFNQTHEPN 73

Query: 393 -------------------------EMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
                                    ++   D VS+ TLI+ Y   G    AL LF EM+E
Sbjct: 74  VFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMRE 133

Query: 428 SGVEPDAITVLAILSA-CNHAGLVKEAETL 456
            G+  D  T   +++A CNH GL+++  +L
Sbjct: 134 MGLVMDGFTFSGVITACCNHVGLIRQLHSL 163


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 174/555 (31%), Positives = 303/555 (54%), Gaps = 4/555 (0%)

Query: 23  LYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESA 82
           + S+ A++ ++IK     ++      QLH   +++ S +    S  +IS+Y        A
Sbjct: 1   MSSSKALIKTLIKNPTRIKSKSQ-AKQLHAQFIRTQSLSHTSAS-IVISIYTNLKLLHEA 58

Query: 83  YQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQI 142
             +F  +     ++W S+I CFT    + R+L  F EM   G      +   ++  C+ +
Sbjct: 59  LLVFKTLESPPVLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMM 118

Query: 143 GELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAM 202
            +L  G  +H  ++  G  +  ++   AL+++YSK        +VFE M  ++ VS+  +
Sbjct: 119 MDLRFGESVHGFIVRLG-MDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTV 177

Query: 203 ISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGF 262
           I+G   S  Y+  + + R M    +KP   TL+ VL   +E  D+  GK IHGY    G 
Sbjct: 178 IAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGI 237

Query: 263 DFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFS 322
           D D ++ ++L+ MY +        R+ F     +D + W+S++ GY Q+G  +EA++LF 
Sbjct: 238 DSDVYIGSSLVDMYAKSARIEDSERV-FSHLYRRDSISWNSLVAGYVQNGRYNEALRLFR 296

Query: 323 RMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCG 382
           +M   ++ P +V   +++ +C   + L  G  +H Y+++ G   ++ I +AL++MYSKCG
Sbjct: 297 QMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCG 356

Query: 383 SITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILS 442
           +I ++ +IF+ M   D VSWT +I G+  HG+G EA+ LF EM+  GV+P+ +  +A+L+
Sbjct: 357 NIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLT 416

Query: 443 ACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPST 502
           AC+H GLV EA   FN++ K   +   +EHYA   DLLG++GK+E+A   +S M ++P+ 
Sbjct: 417 ACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTG 476

Query: 503 RILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVM 562
            + S+L+S+C +H  LE+AE +A ++   + EN   Y L+  + + +G W    ++   +
Sbjct: 477 SVWSTLLSSCSVHKNLELAEKVAEKIFTIDSENMGAYVLMCNMYASNGRWKEMAKLRLRV 536

Query: 563 RAKGLSKSYGFSRIE 577
           R KGL K    S IE
Sbjct: 537 RKKGLRKKPACSWIE 551



 Score =  212 bits (539), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 126/431 (29%), Positives = 229/431 (53%), Gaps = 9/431 (2%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           E+  SG   +  + PSV+K+C      + FG  +H   ++ G D D    N+L++MY+K 
Sbjct: 95  EMRASGRCPDHNVFPSVLKSCTMMMDLR-FGESVHGFIVRLGMDCDLYTGNALMNMYSKL 153

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
              +S  ++F+ MP +D +S+N++I  + Q+G Y  +L M REM        A  L+ ++
Sbjct: 154 LGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVL 213

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
            + S+  ++  G++IH  VI  G  +  V++ ++L+D+Y+K      + RVF  +  R+ 
Sbjct: 214 PIFSEYVDVLKGKEIHGYVIRKG-IDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDS 272

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           +SW ++++G + +  Y+  + LFR M    V+P  V  + V+ ACA L  L  GK +HGY
Sbjct: 273 ISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGY 332

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
               GF  +  +++AL+ MY +C   +  AR IF+R  + D V W++II G++  G   E
Sbjct: 333 VLRGGFGRNIFIASALVDMYSKCGN-IQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHE 391

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA-GLNFDVSIGNALM 375
           A+ LF  M+ + ++PN V  +A+L++C+    +    G    + K  GLN ++    A+ 
Sbjct: 392 AVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVA 451

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVS-WTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           ++  + G +  ++   ++M      S W+TL+S    H    + L+L  ++ E     D+
Sbjct: 452 DLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVH----KNLELAEKVAEKIFTIDS 507

Query: 435 ITVLAILSACN 445
             + A +  CN
Sbjct: 508 ENMGAYVLMCN 518


>gi|242077758|ref|XP_002448815.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
 gi|241939998|gb|EES13143.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
          Length = 913

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 190/568 (33%), Positives = 305/568 (53%), Gaps = 13/568 (2%)

Query: 20  PSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKP 79
           P+       ++  +++A A   + +  G+QLH    K G  +D ++ N+LI MYAK  + 
Sbjct: 210 PTNPMERRKMIADLLRASAKGSSLRG-GVQLHGALTKLGFGSDTMLGNNLIDMYAKCGEL 268

Query: 80  ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE-LLAGIISL 138
           + A ++F  M  R+ +SW +++  F Q+G     L +  EM         E  L+  +  
Sbjct: 269 DMAGEVFGGMRDRNVVSWTALMVGFLQHGDATGCLRLLGEMRAASEAAPNEYTLSASLKA 328

Query: 139 CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE-QMVIRNEV 197
           C    ++  G  IH L +  G +E    V+++L+ LYSK      A RVF+   + R   
Sbjct: 329 CCVTEDMGAGVGIHGLCVRTG-YEEHYVVASSLVLLYSKGGRIGDARRVFDCAGLGRGLA 387

Query: 198 SWTAMISGCIDSQNYDTGIDLFRAM------QREGVKPTRVTLTIVLLACAELRDLRNGK 251
           +W AMISG   + +    + +FR M        +  +P   T   +L AC  L   R G 
Sbjct: 388 TWNAMISGYAHAGHGRDALLVFREMRRRRRRHEDQHQPDEFTFASLLKACGGLGAPREGA 447

Query: 252 AIHGYAYCCGFDFDHH--LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
            +H      GF    +  L+ AL+ MY +C   L  A  +FER + K+ + W++++ G++
Sbjct: 448 QVHAAMAASGFSTASNAILAGALVDMYVKCGR-LPVAMQVFERLERKNAIQWTTVVVGHA 506

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
           Q G + EA++LF R        ++  L +I+      + +  G  VHCY +K+    DVS
Sbjct: 507 QEGQVMEALELFRRFWRSGARADAHVLSSIVGVLADFALVEQGRQVHCYGVKSPAGTDVS 566

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
            GN++++MY KCG    + ++F E+ AR+ VSWTT+I+G G HG G EA+ +F EM+  G
Sbjct: 567 AGNSIVDMYLKCGLPDEAERMFREIPARNVVSWTTMINGLGKHGLGREAVAMFEEMRAGG 626

Query: 430 VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
           VEPD +T LA+LSAC+HAGLV E    F+ + +++ +    EHYAC VDLLG++G++ +A
Sbjct: 627 VEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELREA 686

Query: 490 CKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSES 549
             ++ TMPM+P+  +  +L+SACR+H  + V       L+  + +N  NY  LS V +E+
Sbjct: 687 RDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAIDGDNPVNYVTLSNVFAEA 746

Query: 550 GNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           G W    +V   MR +GL K  G S +E
Sbjct: 747 GAWRECHKVRDAMRRRGLKKQGGCSWVE 774


>gi|224145066|ref|XP_002325515.1| predicted protein [Populus trichocarpa]
 gi|222862390|gb|EEE99896.1| predicted protein [Populus trichocarpa]
          Length = 683

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 179/567 (31%), Positives = 296/567 (52%), Gaps = 37/567 (6%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G QLH   +  G +   V+   L++ Y+ FS    A+ +       + + WN +I+ +  
Sbjct: 60  GKQLHAHTISLGFENHLVLVPKLVTFYSSFSLLADAHTITVNSDIVNPLPWNLLISSYVN 119

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           NG +  +L  +REM   G          ++  C +  +L+ GR++H  +        +++
Sbjct: 120 NGLHGEALSAYREMVHKGVRPDNFTYPSVLKACGEKLDLDFGREVHESINAAYGHRWNLY 179

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMIS---------------------- 204
           V  +L+ +Y K      A R+F QM  R+ VSW  +IS                      
Sbjct: 180 VHNSLVSMYGKFGELDAARRLFNQMPERDAVSWNGIISNYASRGLWKEAFELFEEMRLAG 239

Query: 205 -------------GCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGK 251
                        GC+ ++N+   ++L   M+R  +    V + I L AC+ +  ++ G 
Sbjct: 240 AEVNIITWNTIAGGCVQTRNFKGALELLSQMRRCDIDLDPVAMIIGLGACSHIGAIKLGT 299

Query: 252 AIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQS 311
            IH  A    FD   ++  AL+ MY  C +  H A I+F+  K K +  W+S++ GY+  
Sbjct: 300 VIHASAIRSCFDGFDNVRNALITMYSRCKDLRH-ADILFKSIKTKSLTTWNSMLSGYTHM 358

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK-AGLNFDVSI 370
               EA  LF  M    IEPN VT+ +IL  C R + L  G   HCYIM+  G    + +
Sbjct: 359 DRSEEASFLFREMLFSGIEPNYVTIASILPHCARVANLQQGKEFHCYIMRREGFEDYLLL 418

Query: 371 GNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV 430
            N+L+ MY++ G + S+ ++F+ +  RD V++T+LI+GYG  G G+ AL+LF EM +  +
Sbjct: 419 WNSLVEMYARSGKVLSAKRVFDSLRRRDKVTYTSLIAGYGIQGEGKTALKLFDEMIKHRI 478

Query: 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDAC 490
           +PD +T++A+LSAC+H+GLV E   LF  +     I  A+EH++C VDL G++G +  A 
Sbjct: 479 KPDQVTMVAVLSACSHSGLVTEGNVLFEKMSTLYGIVPAVEHFSCMVDLFGRAGLLNKAK 538

Query: 491 KVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESG 550
           KV+++MP +P+T + ++LV ACRIHG  E+ E  A +L+E +PEN   Y L++ + + +G
Sbjct: 539 KVITSMPYRPTTAMWATLVGACRIHGNTEIGEWAAEKLLEMKPENPGYYVLIANMHAAAG 598

Query: 551 NWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            W    EV   MR  G+ K+ G + ++
Sbjct: 599 RWSKLAEVRTYMRDLGVRKAPGCTWVD 625



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 119/462 (25%), Positives = 208/462 (45%), Gaps = 52/462 (11%)

Query: 132 LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM 191
           ++ ++  C+ +  L  G+Q+HA  I  G FE  + +   L+  YS       A  +    
Sbjct: 44  ISSLLYSCTNLKSLPQGKQLHAHTISLG-FENHLVLVPKLVTFYSSFSLLADAHTITVNS 102

Query: 192 VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGK 251
            I N + W  +IS  +++  +   +  +R M  +GV+P   T   VL AC E  DL  G+
Sbjct: 103 DIVNPLPWNLLISSYVNNGLHGEALSAYREMVHKGVRPDNFTYPSVLKACGEKLDLDFGR 162

Query: 252 AIH---GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
            +H     AY  G  ++ ++  +L+ MY +  E L  AR +F +   +D V W+ II  Y
Sbjct: 163 EVHESINAAY--GHRWNLYVHNSLVSMYGKFGE-LDAARRLFNQMPERDAVSWNGIISNY 219

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ-------SFLSH---------- 351
           +  G   EA +LF  MRL   E N +T   I   C +          LS           
Sbjct: 220 ASRGLWKEAFELFEEMRLAGAEVNIITWNTIAGGCVQTRNFKGALELLSQMRRCDIDLDP 279

Query: 352 -----GLG-------------VHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNE 393
                GLG             +H   +++  +   ++ NAL+ MYS+C  +  +  +F  
Sbjct: 280 VAMIIGLGACSHIGAIKLGTVIHASAIRSCFDGFDNVRNALITMYSRCKDLRHADILFKS 339

Query: 394 MAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEA 453
           +  +   +W +++SGY      EEA  LF EM  SG+EP+ +T+ +IL  C     +++ 
Sbjct: 340 IKTKSLTTWNSMLSGYTHMDRSEEASFLFREMLFSGIEPNYVTIASILPHCARVANLQQG 399

Query: 454 ETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACR 513
           +     +M+ +     +  +   V++  +SGK+  A +V  ++  +      +SL++   
Sbjct: 400 KEFHCYIMRREGFEDYLLLWNSLVEMYARSGKVLSAKRVFDSLRRRDKV-TYTSLIAGYG 458

Query: 514 IHGRLEVA-----EMLAHQLIEAEPENAANYTLLSMVCSESG 550
           I G  + A     EM+ H++   +P+      +LS  CS SG
Sbjct: 459 IQGEGKTALKLFDEMIKHRI---KPDQVTMVAVLS-ACSHSG 496



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 110/213 (51%), Gaps = 2/213 (0%)

Query: 233 TLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFER 292
           +++ +L +C  L+ L  GK +H +    GF+    L   L+  Y   +  L  A  I   
Sbjct: 43  SISSLLYSCTNLKSLPQGKQLHAHTISLGFENHLVLVPKLVTFYSSFS-LLADAHTITVN 101

Query: 293 TKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHG 352
           + + + + W+ +I  Y  +G   EA+  +  M  + + P++ T  ++L +C  +  L  G
Sbjct: 102 SDIVNPLPWNLLISSYVNNGLHGEALSAYREMVHKGVRPDNFTYPSVLKACGEKLDLDFG 161

Query: 353 LGVHCYIMKA-GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGF 411
             VH  I  A G  +++ + N+L++MY K G + ++ ++FN+M  RD VSW  +IS Y  
Sbjct: 162 REVHESINAAYGHRWNLYVHNSLVSMYGKFGELDAARRLFNQMPERDAVSWNGIISNYAS 221

Query: 412 HGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
            G  +EA +LF EM+ +G E + IT   I   C
Sbjct: 222 RGLWKEAFELFEEMRLAGAEVNIITWNTIAGGC 254



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 117/269 (43%), Gaps = 16/269 (5%)

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLL----AILSSCTRQSFLSHGLGVHCYIM 360
           ++  ++ G L +A + FS ++L     N   +L    ++L SCT    L  G  +H + +
Sbjct: 9   LKDLARKGHLLKAFETFSLIKLHASSANRDAILHSISSLLYSCTNLKSLPQGKQLHAHTI 68

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
             G    + +   L+  YS    +  +H I       + + W  LIS Y  +G   EAL 
Sbjct: 69  SLGFENHLVLVPKLVTFYSSFSLLADAHTITVNSDIVNPLPWNLLISSYVNNGLHGEALS 128

Query: 421 LFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACY---- 476
            + EM   GV PD  T  ++L AC      ++ +  F   + E   A     +  Y    
Sbjct: 129 AYREMVHKGVRPDNFTYPSVLKACG-----EKLDLDFGREVHESINAAYGHRWNLYVHNS 183

Query: 477 -VDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPE- 534
            V + GK G+++ A ++ + MP + +    + ++S     G  + A  L  ++  A  E 
Sbjct: 184 LVSMYGKFGELDAARRLFNQMPERDAVS-WNGIISNYASRGLWKEAFELFEEMRLAGAEV 242

Query: 535 NAANYTLLSMVCSESGNWLGAEEVWRVMR 563
           N   +  ++  C ++ N+ GA E+   MR
Sbjct: 243 NIITWNTIAGGCVQTRNFKGALELLSQMR 271


>gi|449496714|ref|XP_004160205.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g11290-like [Cucumis sativus]
          Length = 616

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 178/555 (32%), Positives = 303/555 (54%), Gaps = 5/555 (0%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G      IL   I  C    T   FG+Q+H T +K G   +P I  +L+ MY K      
Sbjct: 63  GSPPTPPILTKTISICT-KSTLLDFGIQVHSTIIKLGFSLNPYIFTALVDMYGKCWSISD 121

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A+++FDEM     ++WNS++  + Q G+ + ++ +F EM   G       L+G +  CSQ
Sbjct: 122 AHKVFDEMSCPSVVTWNSLVTGYLQAGYPLMAVSLFLEMLKKGIEPTPFSLSGGLVGCSQ 181

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
           + + +LG Q+HA+ +    F  +V V T L+D+YSKC +   + RVF+ M+ +N  +WT+
Sbjct: 182 LQKGDLGSQLHAMSL-KLRFSSNVVVGTGLIDMYSKCCNLQDSRRVFDIMLNKNVFTWTS 240

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           MISG   +Q     + L R M    ++P  +T   +L + +  R     K IH      G
Sbjct: 241 MISGYARNQLPHEAMXLMREMLHLNLEPNGMTYNSLLSSFSCPRHFDKCKQIHCRIITEG 300

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
           ++ +++++  L+  Y EC  +L   R +    ++ D + W+++I G++  G   EA++ F
Sbjct: 301 YESNNYIAVTLVTAYSECCGSLEDYRKVCSNIRMSDQISWNAVIAGFTNLGIGEEALECF 360

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
            +MR E+ + +  T  +I  +    S L  G  +H  + K G   ++S+ N L++MY++ 
Sbjct: 361 IQMRREKFDVDFFTFTSIFKAIGMTSALEEGKQIHGLVYKTGYTLNLSVQNGLVSMYARS 420

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
           G+I  S  +F+ M   D +SW +L+SG  +HG GEEA+ LF +M+ + ++PD  + LA+L
Sbjct: 421 GAIRDSKMVFSMMNEHDLISWNSLLSGCAYHGCGEEAIDLFEKMRRTCIKPDNTSFLAVL 480

Query: 442 SACNHAGLVKEAETLFNNVMKEKKI--ALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           +AC+H GL+ +    F  +M+  ++     +EHYA  VDL G++GK+ +A   + ++P++
Sbjct: 481 TACSHVGLLDKGLEYF-KLMRNSELVEPPKLEHYATLVDLFGRAGKLYEAEAFIESIPIE 539

Query: 500 PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVW 559
           P   I  +L+SAC IHG  ++A   A +L+E  P + A Y +LS      G W  A  + 
Sbjct: 540 PGISIYKALLSACLIHGNKDIAIRTAKKLLELYPYDPATYIMLSNALGRDGYWDDAASIR 599

Query: 560 RVMRAKGLSKSYGFS 574
           R+M  +G+ K  GFS
Sbjct: 600 RLMSNRGVKKEPGFS 614



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 115/228 (50%), Gaps = 1/228 (0%)

Query: 216 IDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHM 275
           I     + R G  PT   LT  +  C +   L  G  +H      GF  + ++  AL+ M
Sbjct: 53  IQFLVQLLRHGSPPTPPILTKTISICTKSTLLDFGIQVHSTIIKLGFSLNPYIFTALVDM 112

Query: 276 YCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVT 335
           Y +C  ++  A  +F+      VV W+S++ GY Q+G    A+ LF  M  + IEP   +
Sbjct: 113 YGKCW-SISDAHKVFDEMSCPSVVTWNSLVTGYLQAGYPLMAVSLFLEMLKKGIEPTPFS 171

Query: 336 LLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA 395
           L   L  C++      G  +H   +K   + +V +G  L++MYSKC ++  S ++F+ M 
Sbjct: 172 LSGGLVGCSQLQKGDLGSQLHAMSLKLRFSSNVVVGTGLIDMYSKCCNLQDSRRVFDIML 231

Query: 396 ARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
            ++  +WT++ISGY  +    EA+ L  EM    +EP+ +T  ++LS+
Sbjct: 232 NKNVFTWTSMISGYARNQLPHEAMXLMREMLHLNLEPNGMTYNSLLSS 279


>gi|15236277|ref|NP_195239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098809|sp|O49619.1|PP350_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g35130, chloroplastic; Flags: Precursor
 gi|2924523|emb|CAA17777.1| putative protein [Arabidopsis thaliana]
 gi|7270464|emb|CAB80230.1| putative protein [Arabidopsis thaliana]
 gi|332661071|gb|AEE86471.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 804

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 195/574 (33%), Positives = 310/574 (54%), Gaps = 10/574 (1%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
            Y + +  Y + +  +G+ ++T   P VIK+ A   + +  G ++H   +K G  +D  +
Sbjct: 110 LYIEAVQFYSRMVF-AGVKADTFTYPFVIKSVAGISSLEE-GKKIHAMVIKLGFVSDVYV 167

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
            NSLIS+Y K      A ++F+EMP RD +SWNS+I+ +   G    SL +F+EM  CGF
Sbjct: 168 CNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCGF 227

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
                     +  CS +   ++G++IH   +        V V T++LD+YSK      A 
Sbjct: 228 KPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAE 287

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDL-FRAM-QREGVKPTRVTLTIVLLACAE 243
           R+F  M+ RN V+W  MI GC       T   L F+ M ++ G++P  +T   +L A A 
Sbjct: 288 RIFNGMIQRNIVAWNVMI-GCYARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPASAI 346

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
           L     G+ IHGYA   GF     L  AL+ MY EC + L  A +IF+R   K+V+ W+S
Sbjct: 347 LE----GRTIHGYAMRRGFLPHMVLETALIDMYGECGQ-LKSAEVIFDRMAEKNVISWNS 401

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           II  Y Q+G    A++LF  +    + P+S T+ +IL +      LS G  +H YI+K+ 
Sbjct: 402 IIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSR 461

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
              +  I N+L++MY+ CG +  + + FN +  +D VSW ++I  Y  HG+G  ++ LF 
Sbjct: 462 YWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSIIMAYAVHGFGRISVWLFS 521

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS 483
           EM  S V P+  T  ++L+AC+ +G+V E    F ++ +E  I   IEHY C +DL+G++
Sbjct: 522 EMIASRVNPNKSTFASLLAACSISGMVDEGWEYFESMKREYGIDPGIEHYGCMLDLIGRT 581

Query: 484 GKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLS 543
           G    A + +  MP  P+ RI  SL++A R H  + +AE  A Q+ + E +N   Y LL 
Sbjct: 582 GNFSAAKRFLEEMPFVPTARIWGSLLNASRNHKDITIAEFAAEQIFKMEHDNTGCYVLLL 641

Query: 544 MVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            + +E+G W     +  +M +KG+S++   S +E
Sbjct: 642 NMYAEAGRWEDVNRIKLLMESKGISRTSSRSTVE 675



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 146/514 (28%), Positives = 258/514 (50%), Gaps = 17/514 (3%)

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           DP ++ +L   +A     E A QLFDEM   D   WN +I  FT  G Y+ +++ +  M 
Sbjct: 64  DPALTRALRG-FADSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMV 122

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
             G          +I   + I  LE G++IHA+VI  G F   V+V  +L+ LY K    
Sbjct: 123 FAGVKADTFTYPFVIKSVAGISSLEEGKKIHAMVIKLG-FVSDVYVCNSLISLYMKLGCA 181

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             A +VFE+M  R+ VSW +MISG +   +  + + LF+ M + G KP R +    L AC
Sbjct: 182 WDAEKVFEEMPERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGAC 241

Query: 242 AELRDLRNGKAIHGYAYCCGFDF-DHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
           + +   + GK IH +A     +  D  +  +++ MY +  E  +  R IF     +++V 
Sbjct: 242 SHVYSPKMGKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAER-IFNGMIQRNIVA 300

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLER-IEPNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
           W+ +I  Y+++G +++A   F +M  +  ++P+ +T + +L +    S +  G  +H Y 
Sbjct: 301 WNVMIGCYARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPA----SAILEGRTIHGYA 356

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEAL 419
           M+ G    + +  AL++MY +CG + S+  IF+ MA ++ +SW ++I+ Y  +G    AL
Sbjct: 357 MRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSAL 416

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479
           +LF E+ +S + PD+ T+ +IL A   +  + E   +   ++K +  +  I      V +
Sbjct: 417 ELFQELWDSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTI-ILNSLVHM 475

Query: 480 LGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE-PENAAN 538
               G +EDA K  + + +K      +S++ A  +HG   ++  L  ++I +    N + 
Sbjct: 476 YAMCGDLEDARKCFNHILLKDVVS-WNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKST 534

Query: 539 YTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYG 572
           +  L   CS SG     +E W    +  + + YG
Sbjct: 535 FASLLAACSISGM---VDEGWEYFES--MKREYG 563


>gi|115458828|ref|NP_001053014.1| Os04g0463800 [Oryza sativa Japonica Group]
 gi|38347057|emb|CAE04357.2| OSJNBa0060P14.4 [Oryza sativa Japonica Group]
 gi|113564585|dbj|BAF14928.1| Os04g0463800 [Oryza sativa Japonica Group]
          Length = 767

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 192/559 (34%), Positives = 309/559 (55%), Gaps = 7/559 (1%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G   N+  + S ++AC         G  LH   +K+G    P + +SL SMY K    E 
Sbjct: 210 GARPNSRTMESGLEACG-VLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTED 268

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A  LF E+P +D +SW S+I  + + G   +++E+F  M   G      +++ +++    
Sbjct: 269 ARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGN 328

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
             ++  G+  HA  IV  +F  SV +  AL+ +Y+KC    IA  VF  +  R+  SW++
Sbjct: 329 DAKVRGGKTFHA-AIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSS 387

Query: 202 MISGCIDSQNYDTGIDLFRAMQ---REGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258
           M+     +      ++L+R MQ   ++  +    +L  ++ +C+ L  LR G++ H Y+ 
Sbjct: 388 MVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSI 447

Query: 259 CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAM 318
                 +  ++ AL+ MY  C      AR IF   K KDVV WS++I  YS  G   +A+
Sbjct: 448 KHLAGENSSVANALISMYGRCGN-FDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDAL 506

Query: 319 KLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMY 378
            L+ +M  E ++PNS TL++++SSC   + L HG  +H ++   GL  D+SI  AL++MY
Sbjct: 507 LLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMY 566

Query: 379 SKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
            KCG +  + ++F+ M  RD V+W  +ISGYG HG   +AL+LF  M+   V+P+++T L
Sbjct: 567 MKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFL 626

Query: 439 AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPM 498
           AILSAC HAGLV +   LF   M+E  +   ++HYAC VDLLGKSG +++A  VVS MP+
Sbjct: 627 AILSACCHAGLVDKGRELFTR-MEEYSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPI 685

Query: 499 KPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEV 558
           +P   I  +L+ AC++H   E+   +A +   ++PEN   Y L+S     +  W   E++
Sbjct: 686 EPDGGIWGTLLGACKMHDNFEMGLRVAKKAFASDPENDGYYILMSNSYGSAEKWNEIEKL 745

Query: 559 WRVMRAKGLSKSYGFSRIE 577
             +M+  G+ KS G+S I+
Sbjct: 746 RDMMKNHGVEKSIGWSTID 764



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 129/482 (26%), Positives = 243/482 (50%), Gaps = 18/482 (3%)

Query: 47  GLQLHCTALKSG---SDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINC 103
           G  +H  +++ G    D    +++SL+ MYA+      A +LFDEMP RD ++W ++I+ 
Sbjct: 126 GAAVHAYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISG 185

Query: 104 FTQNGFYVRSL----EMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDG 159
              NG     L     M R     G    +  +   +  C  +GEL +G  +H   +  G
Sbjct: 186 CVCNGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAG 245

Query: 160 SFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLF 219
                  VS+ L  +Y+KC     A  +F ++  ++ VSWT++I     + + +  ++LF
Sbjct: 246 VGHCPSVVSS-LFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELF 304

Query: 220 RAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCEC 279
             M+  G++P  V ++ +L        +R GK  H       F     +  AL+ MY +C
Sbjct: 305 LGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKC 364

Query: 280 TEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRL---ERIEPNSVTL 336
            + +  A  +F     +D   WSS++  Y ++G   + ++L+  M+    +  E ++ +L
Sbjct: 365 KQ-VDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSL 423

Query: 337 LAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA 396
           ++I+SSC+R   L  G   HCY +K     + S+ NAL++MY +CG+   + +IF  +  
Sbjct: 424 ISIISSCSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKT 483

Query: 397 RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETL 456
           +D V+W+ LIS Y   G+ ++AL L+ +M   GV+P++ T+++++S+C +   ++  E +
Sbjct: 484 KDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELI 543

Query: 457 FNNVMKEKKIALAIEHYAC--YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRI 514
            ++V   K + L  +   C   VD+  K G++  A K+  +M ++      + ++S   +
Sbjct: 544 HSHV---KDVGLECDLSICTALVDMYMKCGQLGIARKMFDSM-LERDVVTWNVMISGYGM 599

Query: 515 HG 516
           HG
Sbjct: 600 HG 601



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 111/383 (28%), Positives = 188/383 (49%), Gaps = 7/383 (1%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           LH  A+ SG    P  +  L+S Y+    P  A   F   P  D   WNS++    +   
Sbjct: 28  LHALAVTSGLSPRPDFAAKLVSAYSSAGLPALAALAFAASPCPDAFLWNSLLRSRHRASD 87

Query: 110 YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFE--LSVFV 167
           +  +L   R M   G          + S  +++G L +G  +HA  +  G  E   SV V
Sbjct: 88  FASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVHAYSVRFGLLEGDGSVAV 147

Query: 168 STALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE-- 225
           +++L+ +Y++C     A+R+F++M  R+ V+WTA+ISGC+ +     G+     M R   
Sbjct: 148 ASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAG 207

Query: 226 --GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEAL 283
             G +P   T+   L AC  L +L  G  +HG+    G      + ++L  MY +C ++ 
Sbjct: 208 DGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKC-DST 266

Query: 284 HPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC 343
             ARI+F     KD+V W+S+I  Y ++G   +A++LF  M    ++P+ V +  +L+  
Sbjct: 267 EDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGL 326

Query: 344 TRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWT 403
              + +  G   H  I++      V IGNAL++MY+KC  +  +  +F  +  RD  SW+
Sbjct: 327 GNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWS 386

Query: 404 TLISGYGFHGYGEEALQLFLEMQ 426
           +++  Y   G   + L+L+ EMQ
Sbjct: 387 SMVVAYCKAGLDLKCLELYREMQ 409



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 166/332 (50%), Gaps = 9/332 (2%)

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258
           W +++     + ++ + +   R M+  G +P+R T  +V  A AEL  L  G A+H Y+ 
Sbjct: 75  WNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVHAYSV 134

Query: 259 CCGF---DFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
             G    D    ++++L++MY  C       R +F+    +DVV W+++I G   +G   
Sbjct: 135 RFGLLEGDGSVAVASSLVYMYARCGSVRDAVR-LFDEMPERDVVAWTAVISGCVCNGQCG 193

Query: 316 EAMKLFSRMRLER----IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
           E +    RM          PNS T+ + L +C     LS G  +H + +KAG+    S+ 
Sbjct: 194 EGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVV 253

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
           ++L +MY+KC S   +  +F E+  +D VSWT+LI  Y   G+ E+A++LFL M+ESG++
Sbjct: 254 SSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQ 313

Query: 432 PDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACK 491
           PD + +  +L+   +   V+  +T F+  +  +    ++      + +  K  +++ A  
Sbjct: 314 PDEVVISCLLAGLGNDAKVRGGKT-FHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAAT 372

Query: 492 VVSTMPMKPSTRILSSLVSACRIHGRLEVAEM 523
           V   +  + +    S +V+ C+    L+  E+
Sbjct: 373 VFRMLHQRDTDSWSSMVVAYCKAGLDLKCLEL 404



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 82/159 (51%), Gaps = 7/159 (4%)

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVH 356
           D  +W+S++R   ++ D +  +    RMR     P+  T   + S+      L  G  VH
Sbjct: 71  DAFLWNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVH 130

Query: 357 CYIMKAGL---NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHG 413
            Y ++ GL   +  V++ ++L+ MY++CGS+  + ++F+EM  RD V+WT +ISG   +G
Sbjct: 131 AYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNG 190

Query: 414 YGEEALQLFLEMQES----GVEPDAITVLAILSACNHAG 448
              E L   + M  S    G  P++ T+ + L AC   G
Sbjct: 191 QCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLG 229



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 98/210 (46%), Gaps = 4/210 (1%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           +  L LY Q L   G+  N+A L SVI +CA     +H G  +H      G + D  I  
Sbjct: 503 KDALLLYDQML-TEGVKPNSATLVSVISSCANLAALEH-GELIHSHVKDVGLECDLSICT 560

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +L+ MY K  +   A ++FD M  RD ++WN +I+ +  +G  +++L++F  M       
Sbjct: 561 ALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKP 620

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
            +     I+S C   G ++ GR++    + + S E ++     ++DL  K  H   A  V
Sbjct: 621 NSLTFLAILSACCHAGLVDKGRELFTR-MEEYSLEPNLKHYACMVDLLGKSGHLQEAEDV 679

Query: 188 FEQMVIRNEVS-WTAMISGCIDSQNYDTGI 216
              M I  +   W  ++  C    N++ G+
Sbjct: 680 VSAMPIEPDGGIWGTLLGACKMHDNFEMGL 709


>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
          Length = 688

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 189/554 (34%), Positives = 300/554 (54%), Gaps = 48/554 (8%)

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG--FYVRSLEMFREMYLCG 124
           N+L+S YA+  +P+ A  LF+ +P  D  S+N+++    ++G      +L     M+   
Sbjct: 87  NALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADD 146

Query: 125 FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
           FVL A   A  +S C+   +L  G Q+H LV      +  V + TAL+D+Y+KC   + A
Sbjct: 147 FVLNAYSFASALSACAAEKDLRTGEQVHGLVARSPHAD-DVHIGTALVDMYAKCERPVDA 205

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTG--IDLFRAMQREGVKPTRVTLTIVLLACA 242
            RVF+ M  RN VSW ++I+ C + QN   G  + LF  M   G  P  VTL+ V+ ACA
Sbjct: 206 RRVFDAMPERNVVSWNSLIT-CYE-QNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACA 263

Query: 243 ELRDLRNGKAIHGYAYCCGFDF---DHHLSAALMHMYCEC-------------------- 279
            L   R G+ +H  A+    D    D  L+ AL+ MY +C                    
Sbjct: 264 GLAAEREGRQVH--AHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVS 321

Query: 280 ----------TEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
                     +  +  A+++F +   K+V+ W+ +I  Y+Q+G+  EA++LF +++ + I
Sbjct: 322 ETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSI 381

Query: 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD------VSIGNALMNMYSKCGS 383
            P   T   +L++C   + L  G   H +++K G  FD      V +GN+L++MY K GS
Sbjct: 382 WPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGS 441

Query: 384 ITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
           I    ++F  MAARD VSW  +I GY  +G  ++AL LF  M  S   PD++T++ +LSA
Sbjct: 442 IDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSA 501

Query: 444 CNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTR 503
           C H+GLV E    F+ + ++  I  + +HY C VDLLG++G +++A +++  MP +P + 
Sbjct: 502 CGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSV 561

Query: 504 ILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMR 563
           + +SL+ ACR+H  +E+ E  A +L E +PEN+  Y LLS + +E G W     V R M+
Sbjct: 562 LWASLLGACRLHKNVELGERTAGRLFELDPENSGPYVLLSNMYAEMGKWADVFRVRRSMK 621

Query: 564 AKGLSKSYGFSRIE 577
            +G+SK  G S IE
Sbjct: 622 DRGVSKQPGCSWIE 635



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 123/457 (26%), Positives = 203/457 (44%), Gaps = 44/457 (9%)

Query: 18  LHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFS 77
           +H      N     S + ACA A+     G Q+H    +S    D  I  +L+ MYAK  
Sbjct: 142 MHADDFVLNAYSFASALSACA-AEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCE 200

Query: 78  KPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS 137
           +P  A ++FD MP R+ +SWNS+I C+ QNG    +L +F EM   GF      L+ ++S
Sbjct: 201 RPVDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMS 260

Query: 138 LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKC-HHWLI------------- 183
            C+ +     GRQ+HA ++        + ++ AL+D+Y+KC   W               
Sbjct: 261 ACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVV 320

Query: 184 -----------------ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
                            A  VF QMV +N ++W  +I+    +   +  I LF  ++R+ 
Sbjct: 321 SETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDS 380

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDH------HLSAALMHMYCECT 280
           + PT  T   VL AC  +  L+ G+  H +    GF FD        +  +L+ MY + T
Sbjct: 381 IWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLK-T 439

Query: 281 EALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAIL 340
            ++     +FER   +D V W+++I GY+Q+G   +A+ LF RM      P+SVT++ +L
Sbjct: 440 GSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVL 499

Query: 341 SSCTRQSFLSHGLG-VHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR-D 398
           S+C     +  G    H      G+         ++++  + G +  + ++  +M    D
Sbjct: 500 SACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPD 559

Query: 399 FVSWTTLISGYGFHG---YGEEALQLFLEMQESGVEP 432
            V W +L+     H     GE       E+      P
Sbjct: 560 SVLWASLLGACRLHKNVELGERTAGRLFELDPENSGP 596



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 119/474 (25%), Positives = 218/474 (45%), Gaps = 55/474 (11%)

Query: 124 GFVLKAE------LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSK 177
           G VLK+       LL  ++S  +++G L   R++      DG    + F   ALL  Y++
Sbjct: 41  GCVLKSPVAGETFLLNTLVSTYARLGRLREARRV-----FDGIPLRNTFSYNALLSAYAR 95

Query: 178 CHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTG--IDLFRAMQREGVKPTRVTLT 235
                 A  +FE +   ++ S+ A+++          G  +    AM  +       +  
Sbjct: 96  LGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFA 155

Query: 236 IVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV 295
             L ACA  +DLR G+ +HG         D H+  AL+ MY +C   +  AR +F+    
Sbjct: 156 SALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVD-ARRVFDAMPE 214

Query: 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV 355
           ++VV W+S+I  Y Q+G + EA+ LF  M      P+ VTL +++S+C   +    G  V
Sbjct: 215 RNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQV 274

Query: 356 HCYIMKAG-LNFDVSIGNALMNMYSKCG-------------------------------S 383
           H +++K   L  D+ + NAL++MY+KCG                               +
Sbjct: 275 HAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSAN 334

Query: 384 ITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
           +  +  +F++M  ++ ++W  LI+ Y  +G  EEA++LF++++   + P   T   +L+A
Sbjct: 335 VEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNA 394

Query: 444 CNHAGLVKEAETLFNNVMKEK-KIALAIEHYA----CYVDLLGKSGKIEDACKVVSTMPM 498
           C +  +++  +    +V+KE  +     E         VD+  K+G I+D  KV   M  
Sbjct: 395 CGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAA 454

Query: 499 KPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV--CSESG 550
           + +    + +V   + +GR + A  L  +++    EN  + T++ ++  C  SG
Sbjct: 455 RDNVSWNAMIVGYAQ-NGRAKDALHLFERML-CSNENPDSVTMIGVLSACGHSG 506



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 94/215 (43%), Gaps = 9/215 (4%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSG------SDA 61
           E+ + L+ Q L    ++       +V+ AC      Q  G Q H   LK G       ++
Sbjct: 367 EEAIRLFVQ-LKRDSIWPTHYTYGNVLNACGNIAVLQ-LGQQAHVHVLKEGFRFDFGPES 424

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D  + NSL+ MY K    +   ++F+ M  RD +SWN++I  + QNG    +L +F  M 
Sbjct: 425 DVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERML 484

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
                  +  + G++S C   G ++ GR+    +  D     S    T ++DL  +  H 
Sbjct: 485 CSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHL 544

Query: 182 LIALRVFEQMVIR-NEVSWTAMISGCIDSQNYDTG 215
             A  + + M    + V W +++  C   +N + G
Sbjct: 545 KEAEELIKDMPTEPDSVLWASLLGACRLHKNVELG 579



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 49/93 (52%), Gaps = 4/93 (4%)

Query: 356 HCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYG 415
           H  ++K+ +  +  + N L++ Y++ G +  + ++F+ +  R+  S+  L+S Y   G  
Sbjct: 40  HGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYARLGRP 99

Query: 416 EEALQLFLEMQESGVEPDAITVLAILSACNHAG 448
           +EA  LF    E+  +PD  +  A+++A    G
Sbjct: 100 DEARALF----EAIPDPDQCSYNAVVAALARHG 128


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 169/529 (31%), Positives = 297/529 (56%), Gaps = 3/529 (0%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           Q++   L +G      +   L++  +   +   A +LFD+ P  D   WN+I+ C++++G
Sbjct: 93  QIYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHG 152

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
           F+  ++EM+  M +            ++  CS +  LE+GR++H  +   G FE  VFV 
Sbjct: 153 FFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHG-FESDVFVQ 211

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
             L+ LY+KC   + A  VF ++V R  VSWT++ISG   +      + +F  M++  V+
Sbjct: 212 NGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVR 271

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
           P  + L  VL A  ++ DL +GK+IHG     G + +  L  +L  +Y +C   +  AR+
Sbjct: 272 PDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVM-VARL 330

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
            F + +   ++ W+++I GY ++G   EA++LF  M+ + I P+S+T+ + +++C +   
Sbjct: 331 FFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGS 390

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
           L     +  YI  +    DV +  +L++ Y+KCGS+  +  +F+ +  +D V W+ ++ G
Sbjct: 391 LELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVG 450

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468
           YG HG G E++ LF  M+++GV P+ +T + +L+AC ++GLV+E   LF+  M++  I  
Sbjct: 451 YGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHR-MRDYGIEP 509

Query: 469 AIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
             +HYAC VDLLG++G ++ A   V  MP++P   +  +L+SAC+IH  + + E  A +L
Sbjct: 510 RHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSACKIHRHVTLGEYAAERL 569

Query: 529 IEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
              +P N  +Y  LS + + S  W    +V  +MR KGL+K  G+S IE
Sbjct: 570 FSLDPYNTGHYVQLSNLYASSCLWDCVAKVRVLMREKGLTKHLGYSVIE 618



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 107/384 (27%), Positives = 189/384 (49%), Gaps = 4/384 (1%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEM 89
            P V+KAC+ A      G ++H    + G ++D  + N L+++YAK  +   A  +F  +
Sbjct: 176 FPCVLKACS-ALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRL 234

Query: 90  PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGR 149
             R  +SW SII+ + QNG  + +L +F EM           L  ++   + + +LE G+
Sbjct: 235 VDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGK 294

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
            IH  VI  G  E    +  +L  LY+KC H ++A   F Q+   + + W AMISG + +
Sbjct: 295 SIHGCVIKMG-LECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKN 353

Query: 210 QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS 269
              +  I+LFR M+ + ++P  +T+T  + ACA++  L   + +  Y     F  D  ++
Sbjct: 354 GYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVN 413

Query: 270 AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
            +L+  Y +C  ++  AR +F+R   KDVV+WS+++ GY   G   E++ LF  MR   +
Sbjct: 414 TSLIDTYAKCG-SVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGV 472

Query: 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
            PN VT + +L++C     +  G  +   +   G+         ++++  + G +  ++ 
Sbjct: 473 SPNDVTFVGLLTACKNSGLVEEGWDLFHRMRDYGIEPRHQHYACVVDLLGRAGHLDRAYN 532

Query: 390 IFNEMAARDFVS-WTTLISGYGFH 412
               M     VS W  L+S    H
Sbjct: 533 FVMNMPIEPGVSVWGALLSACKIH 556


>gi|38567725|emb|CAE76014.1| B1358B12.23 [Oryza sativa Japonica Group]
          Length = 918

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 192/559 (34%), Positives = 309/559 (55%), Gaps = 7/559 (1%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G   N+  + S ++AC         G  LH   +K+G    P + +SL SMY K    E 
Sbjct: 210 GARPNSRTMESGLEACG-VLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTED 268

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A  LF E+P +D +SW S+I  + + G   +++E+F  M   G      +++ +++    
Sbjct: 269 ARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGN 328

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
             ++  G+  HA  IV  +F  SV +  AL+ +Y+KC    IA  VF  +  R+  SW++
Sbjct: 329 DAKVRGGKTFHA-AIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSS 387

Query: 202 MISGCIDSQNYDTGIDLFRAMQ---REGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258
           M+     +      ++L+R MQ   ++  +    +L  ++ +C+ L  LR G++ H Y+ 
Sbjct: 388 MVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSI 447

Query: 259 CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAM 318
                 +  ++ AL+ MY  C      AR IF   K KDVV WS++I  YS  G   +A+
Sbjct: 448 KHLAGENSSVANALISMYGRCGN-FDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDAL 506

Query: 319 KLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMY 378
            L+ +M  E ++PNS TL++++SSC   + L HG  +H ++   GL  D+SI  AL++MY
Sbjct: 507 LLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMY 566

Query: 379 SKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
            KCG +  + ++F+ M  RD V+W  +ISGYG HG   +AL+LF  M+   V+P+++T L
Sbjct: 567 MKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFL 626

Query: 439 AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPM 498
           AILSAC HAGLV +   LF   M+E  +   ++HYAC VDLLGKSG +++A  VVS MP+
Sbjct: 627 AILSACCHAGLVDKGRELFTR-MEEYSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPI 685

Query: 499 KPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEV 558
           +P   I  +L+ AC++H   E+   +A +   ++PEN   Y L+S     +  W   E++
Sbjct: 686 EPDGGIWGTLLGACKMHDNFEMGLRVAKKAFASDPENDGYYILMSNSYGSAEKWNEIEKL 745

Query: 559 WRVMRAKGLSKSYGFSRIE 577
             +M+  G+ KS G+S I+
Sbjct: 746 RDMMKNHGVEKSIGWSTID 764



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 130/485 (26%), Positives = 245/485 (50%), Gaps = 24/485 (4%)

Query: 47  GLQLHCTALKSG---SDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINC 103
           G  +H  +++ G    D    +++SL+ MYA+      A +LFDEMP RD ++W ++I+ 
Sbjct: 126 GAAVHAYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISG 185

Query: 104 FTQNG-------FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVI 156
              NG       + VR   M R     G    +  +   +  C  +GEL +G  +H   +
Sbjct: 186 CVCNGQCGEGLSYLVR---MVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGV 242

Query: 157 VDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGI 216
             G       VS+ L  +Y+KC     A  +F ++  ++ VSWT++I     + + +  +
Sbjct: 243 KAGVGHCPSVVSS-LFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAV 301

Query: 217 DLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMY 276
           +LF  M+  G++P  V ++ +L        +R GK  H       F     +  AL+ MY
Sbjct: 302 ELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMY 361

Query: 277 CECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRL---ERIEPNS 333
            +C + +  A  +F     +D   WSS++  Y ++G   + ++L+  M+    +  E ++
Sbjct: 362 AKCKQ-VDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDT 420

Query: 334 VTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNE 393
            +L++I+SSC+R   L  G   HCY +K     + S+ NAL++MY +CG+   + +IF  
Sbjct: 421 NSLISIISSCSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGM 480

Query: 394 MAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEA 453
           +  +D V+W+ LIS Y   G+ ++AL L+ +M   GV+P++ T+++++S+C +   ++  
Sbjct: 481 VKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHG 540

Query: 454 ETLFNNVMKEKKIALAIEHYAC--YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSA 511
           E + ++V   K + L  +   C   VD+  K G++  A K+  +M ++      + ++S 
Sbjct: 541 ELIHSHV---KDVGLECDLSICTALVDMYMKCGQLGIARKMFDSM-LERDVVTWNVMISG 596

Query: 512 CRIHG 516
             +HG
Sbjct: 597 YGMHG 601



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 111/383 (28%), Positives = 188/383 (49%), Gaps = 7/383 (1%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           LH  A+ SG    P  +  L+S Y+    P  A   F   P  D   WNS++    +   
Sbjct: 28  LHALAVTSGLSPRPDFAAKLVSAYSSAGLPALAALAFAASPCPDAFLWNSLLRSRHRASD 87

Query: 110 YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFE--LSVFV 167
           +  +L   R M   G          + S  +++G L +G  +HA  +  G  E   SV V
Sbjct: 88  FASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVHAYSVRFGLLEGDGSVAV 147

Query: 168 STALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE-- 225
           +++L+ +Y++C     A+R+F++M  R+ V+WTA+ISGC+ +     G+     M R   
Sbjct: 148 ASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAG 207

Query: 226 --GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEAL 283
             G +P   T+   L AC  L +L  G  +HG+    G      + ++L  MY +C ++ 
Sbjct: 208 DGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKC-DST 266

Query: 284 HPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC 343
             ARI+F     KD+V W+S+I  Y ++G   +A++LF  M    ++P+ V +  +L+  
Sbjct: 267 EDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGL 326

Query: 344 TRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWT 403
              + +  G   H  I++      V IGNAL++MY+KC  +  +  +F  +  RD  SW+
Sbjct: 327 GNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWS 386

Query: 404 TLISGYGFHGYGEEALQLFLEMQ 426
           +++  Y   G   + L+L+ EMQ
Sbjct: 387 SMVVAYCKAGLDLKCLELYREMQ 409



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 166/332 (50%), Gaps = 9/332 (2%)

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258
           W +++     + ++ + +   R M+  G +P+R T  +V  A AEL  L  G A+H Y+ 
Sbjct: 75  WNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVHAYSV 134

Query: 259 CCGF---DFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
             G    D    ++++L++MY  C       R +F+    +DVV W+++I G   +G   
Sbjct: 135 RFGLLEGDGSVAVASSLVYMYARCGSVRDAVR-LFDEMPERDVVAWTAVISGCVCNGQCG 193

Query: 316 EAMKLFSRMRLER----IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
           E +    RM          PNS T+ + L +C     LS G  +H + +KAG+    S+ 
Sbjct: 194 EGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVV 253

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
           ++L +MY+KC S   +  +F E+  +D VSWT+LI  Y   G+ E+A++LFL M+ESG++
Sbjct: 254 SSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQ 313

Query: 432 PDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACK 491
           PD + +  +L+   +   V+  +T F+  +  +    ++      + +  K  +++ A  
Sbjct: 314 PDEVVISCLLAGLGNDAKVRGGKT-FHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAAT 372

Query: 492 VVSTMPMKPSTRILSSLVSACRIHGRLEVAEM 523
           V   +  + +    S +V+ C+    L+  E+
Sbjct: 373 VFRMLHQRDTDSWSSMVVAYCKAGLDLKCLEL 404



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 82/159 (51%), Gaps = 7/159 (4%)

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVH 356
           D  +W+S++R   ++ D +  +    RMR     P+  T   + S+      L  G  VH
Sbjct: 71  DAFLWNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVH 130

Query: 357 CYIMKAGL---NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHG 413
            Y ++ GL   +  V++ ++L+ MY++CGS+  + ++F+EM  RD V+WT +ISG   +G
Sbjct: 131 AYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNG 190

Query: 414 YGEEALQLFLEMQES----GVEPDAITVLAILSACNHAG 448
              E L   + M  S    G  P++ T+ + L AC   G
Sbjct: 191 QCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLG 229



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 98/210 (46%), Gaps = 4/210 (1%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           +  L LY Q L   G+  N+A L SVI +CA     +H G  +H      G + D  I  
Sbjct: 503 KDALLLYDQML-TEGVKPNSATLVSVISSCANLAALEH-GELIHSHVKDVGLECDLSICT 560

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +L+ MY K  +   A ++FD M  RD ++WN +I+ +  +G  +++L++F  M       
Sbjct: 561 ALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKP 620

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
            +     I+S C   G ++ GR++    + + S E ++     ++DL  K  H   A  V
Sbjct: 621 NSLTFLAILSACCHAGLVDKGRELFTR-MEEYSLEPNLKHYACMVDLLGKSGHLQEAEDV 679

Query: 188 FEQMVIRNEVS-WTAMISGCIDSQNYDTGI 216
              M I  +   W  ++  C    N++ G+
Sbjct: 680 VSAMPIEPDGGIWGTLLGACKMHDNFEMGL 709


>gi|3297823|emb|CAA19881.1| putative protein [Arabidopsis thaliana]
 gi|7270348|emb|CAB80116.1| putative protein [Arabidopsis thaliana]
          Length = 844

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 181/559 (32%), Positives = 315/559 (56%), Gaps = 27/559 (4%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           SGL  +    PSV+KAC         G ++HC ALK G   D  ++ SLI +Y+++    
Sbjct: 80  SGLTPDYRTFPSVLKACRTVID----GNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVG 135

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
           +A  LFDEMP RD  SWN++I+ + Q+G    +L +   +      + +  +  ++S C+
Sbjct: 136 NARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLR----AMDSVTVVSLLSACT 191

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
           + G+   G  IH+  I  G       + + LL     C       +VF++M +R+ +SW 
Sbjct: 192 EAGDFNRGVTIHSYSIKHG-------LESELL---RDCQ------KVFDRMYVRDLISWN 235

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
           ++I     ++     I LF+ M+   ++P  +TL  +    ++L D+R  +++ G+    
Sbjct: 236 SIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRK 295

Query: 261 G-FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
           G F  D  +  A++ MY +    +  AR +F      DV+ W++II GY+Q+G  SEA++
Sbjct: 296 GWFLEDITIGNAVVVMYAKLG-LVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIE 354

Query: 320 LFSRMRLE-RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMY 378
           +++ M  E  I  N  T +++L +C++   L  G+ +H  ++K GL  DV +  +L +MY
Sbjct: 355 MYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMY 414

Query: 379 SKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
            KCG +  +  +F ++   + V W TLI+ +GFHG+GE+A+ LF EM + GV+PD IT +
Sbjct: 415 GKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFV 474

Query: 439 AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPM 498
            +LSAC+H+GLV E +  F  +  +  I  +++HY C VD+ G++G++E A K + +M +
Sbjct: 475 TLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSL 534

Query: 499 KPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEV 558
           +P   I  +L+SACR+HG +++ ++ +  L E EPE+   + LLS + + +G W G +E+
Sbjct: 535 QPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEI 594

Query: 559 WRVMRAKGLSKSYGFSRIE 577
             +   KGL K+ G+S +E
Sbjct: 595 RSIAHGKGLRKTPGWSSME 613



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 143/502 (28%), Positives = 250/502 (49%), Gaps = 42/502 (8%)

Query: 59  SDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF---YVRSLE 115
           SD   + +   +S +   S  +S    FD +  RD  +WN +I+ + + G     +R   
Sbjct: 15  SDIALICNQPNVSTHVSLSPNKSKMHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFS 74

Query: 116 MFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLY 175
           +F  M   G          ++  C  + +   G +IH L +  G F   V+V+ +L+ LY
Sbjct: 75  LF--MLSSGLTPDYRTFPSVLKACRTVID---GNKIHCLALKFG-FMWDVYVAASLIHLY 128

Query: 176 SKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDL---FRAMQREGVKPTRV 232
           S+      A  +F++M +R+  SW AMISG   S N    + L    RAM         V
Sbjct: 129 SRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAMD-------SV 181

Query: 233 TLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFER 292
           T+  +L AC E  D   G  IH Y+   G +                +E L   + +F+R
Sbjct: 182 TVVSLLSACTEAGDFNRGVTIHSYSIKHGLE----------------SELLRDCQKVFDR 225

Query: 293 TKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHG 352
             V+D++ W+SII+ Y  +     A+ LF  MRL RI+P+ +TL+++ S  ++   +   
Sbjct: 226 MYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRAC 285

Query: 353 LGVHCYIMKAGLNF-DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGF 411
             V  + ++ G    D++IGNA++ MY+K G + S+  +FN +   D +SW T+ISGY  
Sbjct: 286 RSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQ 345

Query: 412 HGYGEEALQLFLEMQESG-VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAI 470
           +G+  EA++++  M+E G +  +  T +++L AC+ AG +++   L   ++K   + L +
Sbjct: 346 NGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLK-NGLYLDV 404

Query: 471 EHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE 530
                  D+ GK G++EDA  +   +P + ++   ++L++    HG  E A ML  ++++
Sbjct: 405 FVVTSLADMYGKCGRLEDALSLFYQIP-RVNSVPWNTLIACHGFHGHGEKAVMLFKEMLD 463

Query: 531 --AEPENAANYTLLSMVCSESG 550
              +P++    TLLS  CS SG
Sbjct: 464 EGVKPDHITFVTLLS-ACSHSG 484


>gi|356514095|ref|XP_003525742.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Glycine max]
          Length = 700

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 176/546 (32%), Positives = 305/546 (55%), Gaps = 5/546 (0%)

Query: 34  IKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRD 93
           +K+C+  Q  +  G  +H    K   D D  + ++LI +Y+K  +   A ++F E P +D
Sbjct: 112 LKSCSGLQKLE-LGKMIHGFLKKKKIDNDMFVGSALIELYSKCGQMNDAVKVFTEYPKQD 170

Query: 94  TISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAEL-LAGIISLCSQIGELELGRQIH 152
            + W SII  + QNG    +L  F  M +   V    + L    S C+Q+ +  LGR +H
Sbjct: 171 VVLWTSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVH 230

Query: 153 ALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNY 212
             V   G F+  + ++ ++L+LY K      A  +F +M  ++ +SW++M++   D+   
Sbjct: 231 GFVKRRG-FDTKLCLANSILNLYGKTGSIRSAANLFREMPYKDIISWSSMVACYADNGAE 289

Query: 213 DTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAAL 272
              ++LF  M  + ++  RVT+   L ACA   +L  GK IH  A   GF+ D  +S AL
Sbjct: 290 TNALNLFNEMIDKRIELNRVTVISALRACASSSNLEEGKHIHKLAVNYGFELDITVSTAL 349

Query: 273 MHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPN 332
           M MY +C    + A  +F R   KDVV W+ +  GY++ G   +++ +F  M      P+
Sbjct: 350 MDMYMKCFSPKN-AIDLFNRMPKKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSYGTRPD 408

Query: 333 SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFN 392
           ++ L+ IL++ +    +   L +H ++ K+G + +  IG +L+ +Y+KC SI +++++F 
Sbjct: 409 AIALVKILAASSELGIVQQALCLHAFVSKSGFDNNEFIGASLIELYAKCSSIDNANKVFK 468

Query: 393 EMAARDFVSWTTLISGYGFHGYGEEALQLFLEM-QESGVEPDAITVLAILSACNHAGLVK 451
            M  +D V+W+++I+ YGFHG GEEAL+LF +M   S V+P+ +T ++ILSAC+HAGL++
Sbjct: 469 GMRRKDVVTWSSIIAAYGFHGQGEEALKLFYQMSNHSDVKPNDVTFVSILSACSHAGLIE 528

Query: 452 EAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSA 511
           E   +F+ ++ E ++    EHY   VDLLG+ G+++ A  +++ MPM+    +  +L+ A
Sbjct: 529 EGIKMFHVMVNEYQLMPNTEHYGIMVDLLGRMGELDKALDMINEMPMQAGPHVWGALLGA 588

Query: 512 CRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSY 571
           CRIH  +++ E+ A  L   +P +A  YTLLS +     NW  A ++  +++     K  
Sbjct: 589 CRIHQNIKIGELAALNLFLLDPNHAGYYTLLSNIYCVDKNWHDAAKLRTLIKENRFKKIV 648

Query: 572 GFSRIE 577
           G S +E
Sbjct: 649 GQSMVE 654



 Score =  239 bits (611), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 160/520 (30%), Positives = 266/520 (51%), Gaps = 34/520 (6%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           QLH   LK G   D  +   L  +YA+++    A++LF+E P +    WN+++  +   G
Sbjct: 22  QLHSQCLKVGLAHDSFVVTKLNVLYARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEG 81

Query: 109 FYVRSLEMFREM------------YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVI 156
            +V +L +F +M            Y     LK+         CS + +LELG+ IH   +
Sbjct: 82  KWVETLSLFHQMNADAITEERPDNYTVSIALKS---------CSGLQKLELGKMIHGF-L 131

Query: 157 VDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGI 216
                +  +FV +AL++LYSKC     A++VF +   ++ V WT++I+G   + + +  +
Sbjct: 132 KKKKIDNDMFVGSALIELYSKCGQMNDAVKVFTEYPKQDVVLWTSIITGYEQNGSPELAL 191

Query: 217 DLF-RAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHM 275
             F R +  E V P  VTL     ACA+L D   G+++HG+    GFD    L+ +++++
Sbjct: 192 AFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCLANSILNL 251

Query: 276 YCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVT 335
           Y + T ++  A  +F     KD++ WSS++  Y+ +G  + A+ LF+ M  +RIE N VT
Sbjct: 252 YGK-TGSIRSAANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIELNRVT 310

Query: 336 LLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA 395
           +++ L +C   S L  G  +H   +  G   D+++  ALM+MY KC S  ++  +FN M 
Sbjct: 311 VISALRACASSSNLEEGKHIHKLAVNYGFELDITVSTALMDMYMKCFSPKNAIDLFNRMP 370

Query: 396 ARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAET 455
            +D VSW  L SGY   G   ++L +F  M   G  PDAI ++ IL+A +  G+V++A  
Sbjct: 371 KKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSYGTRPDAIALVKILAASSELGIVQQALC 430

Query: 456 LFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACR 513
           L   V K          +  A  ++L  K   I++A KV   M  K      SS+++A  
Sbjct: 431 LHAFVSKS---GFDNNEFIGASLIELYAKCSSIDNANKVFKGMRRK-DVVTWSSIIAAYG 486

Query: 514 IHGRLEVAEMLAHQL---IEAEPENAANYTLLSMVCSESG 550
            HG+ E A  L +Q+    + +P +    ++LS  CS +G
Sbjct: 487 FHGQGEEALKLFYQMSNHSDVKPNDVTFVSILS-ACSHAG 525


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 187/581 (32%), Positives = 326/581 (56%), Gaps = 9/581 (1%)

Query: 1   MVSKHFYE----QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALK 56
           ++S H  E    + L L+++ +   G+ SNT    + ++      +    G+ +H  ALK
Sbjct: 219 IISAHVTEGKCLEALSLFRR-MQEVGVASNTYTFVAALQGVE-DPSFVKLGMGIHGAALK 276

Query: 57  SGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEM 116
           S   AD  ++N+LI+MYAK  + E A ++F  M  RD +SWN++++   QN  Y  +L  
Sbjct: 277 SNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNY 336

Query: 117 FREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYS 176
           FR+M           +  +I+   + G L  G+++HA  I +G  + ++ +   L+D+Y+
Sbjct: 337 FRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNG-LDSNMQIGNTLIDMYA 395

Query: 177 KCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTI 236
           KC         FE M  ++ +SWT +I+G   ++ +   I+LFR +Q +G+    + +  
Sbjct: 396 KCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGS 455

Query: 237 VLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK 296
           VL AC+ L+     + IHGY +      D  L  A++++Y E     + AR  FE  + K
Sbjct: 456 VLRACSGLKSRNFIREIHGYVFKRDLA-DIMLQNAIVNVYGEVGHRDY-ARRAFESIRSK 513

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVH 356
           D+V W+S+I     +G   EA++LF  ++   I+P+S+ +++ LS+    S L  G  +H
Sbjct: 514 DIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIH 573

Query: 357 CYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGE 416
            ++++ G   +  I ++L++MY+ CG++ +S ++F+ +  RD + WT++I+  G HG G 
Sbjct: 574 GFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGN 633

Query: 417 EALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACY 476
           EA+ LF +M +  V PD IT LA+L AC+H+GL+ E +  F  +    ++    EHYAC 
Sbjct: 634 EAIALFKKMTDENVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACM 693

Query: 477 VDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENA 536
           VDLL +S  +E+A + V +MP+KPS+ +  +L+ AC IH   E+ E+ A +L++++ +N+
Sbjct: 694 VDLLSRSNSLEEAYQFVRSMPIKPSSEVWCALLGACHIHSNKELGELAAKELLQSDTKNS 753

Query: 537 ANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
             Y L+S + +  G W   EEV   M+  GL K+ G S IE
Sbjct: 754 GKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIE 794



 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 158/566 (27%), Positives = 287/566 (50%), Gaps = 12/566 (2%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           VS   Y + + LYK E+   G+  +    PSV+KAC  A      G ++H  A+K G   
Sbjct: 121 VSSGKYLEAIELYK-EMRVLGVAIDACTFPSVLKACG-ALGESRLGAEIHGVAVKCGFGE 178

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDE--MPYRDTISWNSIINCFTQNGFYVRSLEMFRE 119
              + N+LI+MY K      A  LFD   M   DT+SWNSII+     G  + +L +FR 
Sbjct: 179 FVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRR 238

Query: 120 MYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH 179
           M   G           +        ++LG  IH   +    F   V+V+ AL+ +Y+KC 
Sbjct: 239 MQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFA-DVYVANALIAMYAKCG 297

Query: 180 HWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLL 239
               A RVF  M+ R+ VSW  ++SG + ++ Y   ++ FR MQ    KP +V++  ++ 
Sbjct: 298 RMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIA 357

Query: 240 ACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVV 299
           A     +L NGK +H YA   G D +  +   L+ MY +C    H     FE    KD++
Sbjct: 358 ASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMG-YAFECMHEKDLI 416

Query: 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
            W++II GY+Q+    EA+ LF +++++ ++ + + + ++L +C+     +    +H Y+
Sbjct: 417 SWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYV 476

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEAL 419
            K  L  D+ + NA++N+Y + G    + + F  + ++D VSWT++I+    +G   EAL
Sbjct: 477 FKRDLA-DIMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEAL 535

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479
           +LF  ++++ ++PD+I +++ LSA  +   +K+ + +   +++ K   L     +  VD+
Sbjct: 536 ELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIR-KGFFLEGPIASSLVDM 594

Query: 480 LGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE--PENAA 537
               G +E++ K+  ++  +    + +S+++A  +HG    A  L  ++ +    P++  
Sbjct: 595 YACCGTVENSRKMFHSVKQRDLI-LWTSMINANGMHGCGNEAIALFKKMTDENVIPDHIT 653

Query: 538 NYTLLSMVCSESGNWLGAEEVWRVMR 563
              LL   CS SG  +  +  + +M+
Sbjct: 654 FLALL-YACSHSGLMVEGKRFFEIMK 678



 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 122/401 (30%), Positives = 210/401 (52%), Gaps = 6/401 (1%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G QLH   LKS   A   ++  L+ MY K    + A ++FDEM  R   +WN+++  F  
Sbjct: 65  GQQLHARLLKSHLSA--FLATKLLHMYEKCGSLKDAVKVFDEMTERTIFTWNAMMGAFVS 122

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           +G Y+ ++E+++EM + G  + A     ++  C  +GE  LG +IH + +  G  E  VF
Sbjct: 123 SGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGFGEF-VF 181

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNE--VSWTAMISGCIDSQNYDTGIDLFRAMQR 224
           V  AL+ +Y KC     A  +F+ +++  E  VSW ++IS  +        + LFR MQ 
Sbjct: 182 VCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQE 241

Query: 225 EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
            GV     T    L    +   ++ G  IHG A       D +++ AL+ MY +C   + 
Sbjct: 242 VGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVANALIAMYAKCGR-ME 300

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
            A  +F     +D V W++++ G  Q+    +A+  F  M+    +P+ V++L ++++  
Sbjct: 301 DAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASG 360

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
           R   L +G  VH Y ++ GL+ ++ IGN L++MY+KC  +      F  M  +D +SWTT
Sbjct: 361 RSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTT 420

Query: 405 LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
           +I+GY  +    EA+ LF ++Q  G++ D + + ++L AC+
Sbjct: 421 IIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACS 461



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 111/316 (35%), Positives = 173/316 (54%), Gaps = 6/316 (1%)

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           ++ LC  +  L  G+Q+HA ++      LS F++T LL +Y KC     A++VF++M  R
Sbjct: 52  LLDLCVAVKALPQGQQLHARLLKS---HLSAFLATKLLHMYEKCGSLKDAVKVFDEMTER 108

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
              +W AM+   + S  Y   I+L++ M+  GV     T   VL AC  L + R G  IH
Sbjct: 109 TIFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAEIH 168

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFE--RTKVKDVVIWSSIIRGYSQSG 312
           G A  CGF     +  AL+ MY +C + L  AR++F+    + +D V W+SII  +   G
Sbjct: 169 GVAVKCGFGEFVFVCNALIAMYGKCGD-LGGARVLFDGIMMEKEDTVSWNSIISAHVTEG 227

Query: 313 DLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN 372
              EA+ LF RM+   +  N+ T +A L      SF+  G+G+H   +K+    DV + N
Sbjct: 228 KCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVAN 287

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
           AL+ MY+KCG +  + ++F  M  RD+VSW TL+SG   +    +AL  F +MQ S  +P
Sbjct: 288 ALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKP 347

Query: 433 DAITVLAILSACNHAG 448
           D ++VL +++A   +G
Sbjct: 348 DQVSVLNLIAASGRSG 363


>gi|224112156|ref|XP_002316102.1| predicted protein [Populus trichocarpa]
 gi|222865142|gb|EEF02273.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 177/553 (32%), Positives = 307/553 (55%), Gaps = 6/553 (1%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           +  +   V+KAC+ ++     G ++HC  +K G + D  +   L+ MYAK  + E +  +
Sbjct: 102 DNVVFSHVLKACSESRNFDE-GRKVHCQIVKFG-NPDSFVFTGLVDMYAKCGEIECSRSV 159

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL 145
           FDE   R+  SW+S+I  + QN      L +F  M           L  ++  C ++G L
Sbjct: 160 FDENLDRNVFSWSSMIAGYVQNNLAQDGLVLFNRMREELIEANQITLGILVHACKKLGAL 219

Query: 146 ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISG 205
             G+ +H  +I  G  EL  ++ TALLDLY+KC     A  VF+++   + VSWTAMI G
Sbjct: 220 HQGKWLHGYLIKCG-IELGSYLVTALLDLYAKCGVVRDARSVFDELHGIDIVSWTAMIVG 278

Query: 206 CIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFD 265
              +   +  + LF   ++  V P  VT+  V  +C++L +L  G++IHG +   G   D
Sbjct: 279 YTQNGCPEEALKLFLQKEQVAVLPNDVTIASVFSSCSQLLNLNLGRSIHGLSIKLG-SRD 337

Query: 266 HHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR 325
             ++ +L+  Y +C +    AR +FE    +DVV W+SII  +SQ+G   EA++LF +MR
Sbjct: 338 PIVTNSLVDFYAKC-QMNRDARYVFETISDRDVVAWNSIISAFSQNGSAYEALELFHQMR 396

Query: 326 LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL-NFDVSIGNALMNMYSKCGSI 384
           +  + P++VTL+++LS+C   + L  G   H Y +K GL + +V +G AL+  Y+KCG  
Sbjct: 397 MGSVLPDAVTLVSVLSACASLNALQVGSSFHAYAVKRGLLSSNVYVGTALLTFYAKCGDA 456

Query: 385 TSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
            S+  IF+ M  +  V+W+ +ISGYG  G G  +L +F +M ++ ++P+     +ILSAC
Sbjct: 457 ESARVIFDGMDQKSTVTWSAMISGYGIQGNGRGSLSIFGDMLKAELKPNEEIFTSILSAC 516

Query: 445 NHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRI 504
           +H G++ E   LF  + ++  +  + +HY C VDLL ++G++++A   +  MP++P   +
Sbjct: 517 SHTGMIGEGWRLFTMICQDYNLVPSTKHYTCMVDLLARAGRLKEALDFIQKMPVQPDVSL 576

Query: 505 LSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRA 564
             + +  C +H R ++ E+   +++E  P +A  Y L+  + +    W   ++V  +M+ 
Sbjct: 577 FGAFLHGCGLHSRFDLGELAIKRMLELHPGDACYYVLMCNLYASDARWSKVKQVRELMKQ 636

Query: 565 KGLSKSYGFSRIE 577
           +GL K+ G S +E
Sbjct: 637 RGLMKTPGCSLME 649



 Score =  236 bits (602), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 148/515 (28%), Positives = 269/515 (52%), Gaps = 9/515 (1%)

Query: 48  LQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQN 107
           +++H   +  G   D   S  L+S+Y  F + + A  +FD +P+ D +SW  II  +  N
Sbjct: 22  MEMHAYLVVQGLTRDLSCSTKLVSLYGSFGRLDLARLVFDTIPHPDFLSWKVIIRWYFLN 81

Query: 108 GFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFV 167
             +   +  +  M +C       + + ++  CS+    + GR++H  ++  G+ +   FV
Sbjct: 82  SEFRDIVGFYNRMRVCLKECDNVVFSHVLKACSESRNFDEGRKVHCQIVKFGNPD--SFV 139

Query: 168 STALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV 227
            T L+D+Y+KC     +  VF++ + RN  SW++MI+G + +     G+ LF  M+ E +
Sbjct: 140 FTGLVDMYAKCGEIECSRSVFDENLDRNVFSWSSMIAGYVQNNLAQDGLVLFNRMREELI 199

Query: 228 KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPAR 287
           +  ++TL I++ AC +L  L  GK +HGY   CG +   +L  AL+ +Y +C   +  AR
Sbjct: 200 EANQITLGILVHACKKLGALHQGKWLHGYLIKCGIELGSYLVTALLDLYAKCG-VVRDAR 258

Query: 288 IIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQS 347
            +F+     D+V W+++I GY+Q+G   EA+KLF +     + PN VT+ ++ SSC++  
Sbjct: 259 SVFDELHGIDIVSWTAMIVGYTQNGCPEEALKLFLQKEQVAVLPNDVTIASVFSSCSQLL 318

Query: 348 FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLIS 407
            L+ G  +H   +K G + D  + N+L++ Y+KC     +  +F  ++ RD V+W ++IS
Sbjct: 319 NLNLGRSIHGLSIKLG-SRDPIVTNSLVDFYAKCQMNRDARYVFETISDRDVVAWNSIIS 377

Query: 408 GYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIA 467
            +  +G   EAL+LF +M+   V PDA+T++++LSAC     ++   +     +K   ++
Sbjct: 378 AFSQNGSAYEALELFHQMRMGSVLPDAVTLVSVLSACASLNALQVGSSFHAYAVKRGLLS 437

Query: 468 LAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQ 527
             +      +    K G  E A  +   M  K ST   S+++S   I G    +  +   
Sbjct: 438 SNVYVGTALLTFYAKCGDAESARVIFDGMDQK-STVTWSAMISGYGIQGNGRGSLSIFGD 496

Query: 528 LIEAE-PENAANYTLLSMVCSESGNWLGAEEVWRV 561
           +++AE   N   +T +   CS +G  +G  E WR+
Sbjct: 497 MLKAELKPNEEIFTSILSACSHTG-MIG--EGWRL 528


>gi|356514087|ref|XP_003525738.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Glycine max]
          Length = 701

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 179/548 (32%), Positives = 306/548 (55%), Gaps = 10/548 (1%)

Query: 34  IKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRD 93
           +K+C+  Q  +  G  +H   LK   D+D  + ++LI +Y+K  +   A ++F E P  D
Sbjct: 112 LKSCSGLQKLE-LGKMIH-GFLKKKIDSDMFVGSALIELYSKCGQMNDAVKVFTEYPKPD 169

Query: 94  TISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAEL-LAGIISLCSQIGELELGRQIH 152
            + W SII  + QNG    +L  F  M +   V    + L    S C+Q+ +  LGR +H
Sbjct: 170 VVLWTSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVH 229

Query: 153 ALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNY 212
             V   G F+  + ++ ++L+LY K     IA  +F +M  ++ +SW++M++   D+   
Sbjct: 230 GFVKRRG-FDTKLCLANSILNLYGKTGSIRIAANLFREMPYKDIISWSSMVACYADNGAE 288

Query: 213 DTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAAL 272
              ++LF  M  + ++  RVT+   L ACA   +L  GK IH  A   GF+ D  +S AL
Sbjct: 289 TNALNLFNEMIDKRIELNRVTVISALRACASSSNLEEGKQIHKLAVNYGFELDITVSTAL 348

Query: 273 MHMYCECTEALHPARII--FERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE 330
           M MY +C     P   I  F R   KDVV W+ +  GY++ G   +++ +F  M      
Sbjct: 349 MDMYLKC---FSPENAIELFNRMPKKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSNGTR 405

Query: 331 PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQI 390
           P+++ L+ IL++ +    +   L +H ++ K+G + +  IG +L+ +Y+KC SI +++++
Sbjct: 406 PDAIALVKILAASSELGIVQQALCLHAFVTKSGFDNNEFIGASLIELYAKCSSIDNANKV 465

Query: 391 FNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM-QESGVEPDAITVLAILSACNHAGL 449
           F  +   D V+W+++I+ YGFHG GEEAL+L  +M   S V+P+ +T ++ILSAC+HAGL
Sbjct: 466 FKGLRHTDVVTWSSIIAAYGFHGQGEEALKLSHQMSNHSDVKPNDVTFVSILSACSHAGL 525

Query: 450 VKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLV 509
           ++E   +F+ ++ E ++   IEHY   VDLLG+ G+++ A  +++ MPM+    +  +L+
Sbjct: 526 IEEGIKMFHVMVNEYQLMPNIEHYGIMVDLLGRMGELDKALDMINNMPMQAGPHVWGALL 585

Query: 510 SACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSK 569
            ACRIH  +++ E+ A  L   +P +A  YTLLS +     NW  A ++  +++   L K
Sbjct: 586 GACRIHQNIKIGELAALNLFLLDPNHAGYYTLLSNIYCVDKNWHDAAKLRTLIKENRLKK 645

Query: 570 SYGFSRIE 577
             G S +E
Sbjct: 646 IVGQSMVE 653



 Score =  240 bits (613), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 159/520 (30%), Positives = 267/520 (51%), Gaps = 35/520 (6%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           QLH   LK G   D  +   L  +YA+++    A++LF+E P +    WN+++  +   G
Sbjct: 22  QLHSQCLKVGLALDSFVVTKLNVLYARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEG 81

Query: 109 FYVRSLEMFREM------------YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVI 156
            +V +L +F +M            Y     LK+         CS + +LELG+ IH  + 
Sbjct: 82  KWVETLSLFHQMNADAVTEERPDNYTVSIALKS---------CSGLQKLELGKMIHGFL- 131

Query: 157 VDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGI 216
                +  +FV +AL++LYSKC     A++VF +    + V WT++I+G   + + +  +
Sbjct: 132 -KKKIDSDMFVGSALIELYSKCGQMNDAVKVFTEYPKPDVVLWTSIITGYEQNGSPELAL 190

Query: 217 DLF-RAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHM 275
             F R +  E V P  VTL     ACA+L D   G+++HG+    GFD    L+ +++++
Sbjct: 191 AFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCLANSILNL 250

Query: 276 YCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVT 335
           Y + T ++  A  +F     KD++ WSS++  Y+ +G  + A+ LF+ M  +RIE N VT
Sbjct: 251 YGK-TGSIRIAANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIELNRVT 309

Query: 336 LLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA 395
           +++ L +C   S L  G  +H   +  G   D+++  ALM+MY KC S  ++ ++FN M 
Sbjct: 310 VISALRACASSSNLEEGKQIHKLAVNYGFELDITVSTALMDMYLKCFSPENAIELFNRMP 369

Query: 396 ARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAET 455
            +D VSW  L SGY   G   ++L +F  M  +G  PDAI ++ IL+A +  G+V++A  
Sbjct: 370 KKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSNGTRPDAIALVKILAASSELGIVQQALC 429

Query: 456 LFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACR 513
           L   V K          +  A  ++L  K   I++A KV   +         SS+++A  
Sbjct: 430 LHAFVTKS---GFDNNEFIGASLIELYAKCSSIDNANKVFKGL-RHTDVVTWSSIIAAYG 485

Query: 514 IHGRLEVAEMLAHQL---IEAEPENAANYTLLSMVCSESG 550
            HG+ E A  L+HQ+    + +P +    ++LS  CS +G
Sbjct: 486 FHGQGEEALKLSHQMSNHSDVKPNDVTFVSILS-ACSHAG 524


>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
          Length = 1753

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 189/615 (30%), Positives = 317/615 (51%), Gaps = 83/615 (13%)

Query: 42   THQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMP---YRDTISWN 98
            +  H   Q+H   + +GS     ++  ++S+YA F     A ++F+  P   + + + WN
Sbjct: 883  SKSHLSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWN 942

Query: 99   SIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVD 158
            SI+     +G+   +LE++  M   G          +I  C+ +G  +L R +H  V+  
Sbjct: 943  SILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEM 1002

Query: 159  GSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYD--TGI 216
            G F+ ++ V   L+ +Y K      A +VFE+M +R+ VSW  M+SG   + NYD     
Sbjct: 1003 G-FQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGY--ALNYDCHGAS 1059

Query: 217  DLFRAMQREGVKPTRVT-----------------------------------LTIVLLAC 241
            ++FR M   G++P  VT                                   L +VL   
Sbjct: 1060 EMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVS 1119

Query: 242  AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKD---- 297
             +L     GK IHGY    GF+    +  +L+ +Y +    ++ ARI+F   K K+    
Sbjct: 1120 VDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGN-VNAARILFLEIKTKNIVSW 1178

Query: 298  -----------------------------------VVIWSSIIRGYSQSGDLSEAMKLFS 322
                                               VV WS++I G++  G   EA++LF 
Sbjct: 1179 NALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFR 1238

Query: 323  RMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCG 382
            RM+L +++ NSVT+ ++LS C   + L  G  +H +++++ ++ ++ +GN L+NMY+K G
Sbjct: 1239 RMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSG 1298

Query: 383  SITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILS 442
            S    + +F ++  +D +SW T+++GYG HG GE A++ F +M + G EPD +T +A+LS
Sbjct: 1299 SFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLS 1358

Query: 443  ACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPST 502
            AC+HAGLV E   LF+ ++KE ++   +EHYAC VDLLG++G +++A KVV +MP++P+ 
Sbjct: 1359 ACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNA 1418

Query: 503  RILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVM 562
             +  +L+++CR+H   EVAE  A Q+     E A +Y LLS + + SG W  + +V    
Sbjct: 1419 CVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVRISA 1478

Query: 563  RAKGLSKSYGFSRIE 577
            + KGL K+ G S I+
Sbjct: 1479 KTKGLKKTPGQSWIQ 1493



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 170/362 (46%), Gaps = 44/362 (12%)

Query: 138  LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR--- 194
            L  Q  +  L +QIH+ +IV GS   S F++  ++ +Y+       A RVFE   I    
Sbjct: 878  LLQQCSKSHLSQQIHSQIIVTGSHR-SAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFS 936

Query: 195  NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
            N + W +++   +     +  ++++  M++ GV     T  +V+ ACA +   +  +++H
Sbjct: 937  NLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVH 996

Query: 255  GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY------ 308
            G+    GF ++ H+   LM MY +    +  AR +FER  V+  V W++++ GY      
Sbjct: 997  GHVVEMGFQWNLHVGNELMGMYGKIGR-MDDARKVFERMAVRSCVSWNTMVSGYALNYDC 1055

Query: 309  -----------------------------SQSGDLSEAMKLFSRMRLERIEPNSVTLLAI 339
                                         ++ G   E M+LF RMR+  I   +  L  +
Sbjct: 1056 HGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVV 1115

Query: 340  LSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDF 399
            LS     +    G  +H Y++K G    + + N+L+ +Y K G++ ++  +F E+  ++ 
Sbjct: 1116 LSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNI 1175

Query: 400  VSWTTLISGYGFHGYGEEALQLFLEMQESG----VEPDAITVLAILSACNHAGLVKEAET 455
            VSW  LIS Y   G+ +EA  +FL+++++     V P+ ++  A++      G  +EA  
Sbjct: 1176 VSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALE 1235

Query: 456  LF 457
            LF
Sbjct: 1236 LF 1237



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 99/205 (48%), Gaps = 3/205 (1%)

Query: 3    SKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDAD 62
            SK   E+ L L+++ +  + + +N+  + SV+  CA      H G ++H   ++S  D +
Sbjct: 1226 SKGQGEEALELFRR-MQLAKVKANSVTIASVLSVCAELAA-LHLGREIHGHVVRSLMDGN 1283

Query: 63   PVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL 122
             ++ N LI+MY K    +    +F+++  +D ISWN+++  +  +G    ++  F +M  
Sbjct: 1284 ILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIK 1343

Query: 123  CGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL 182
             GF         ++S CS  G +  GR++   +I +   E  +     ++DL  +     
Sbjct: 1344 DGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQ 1403

Query: 183  IALRVFEQMVIR-NEVSWTAMISGC 206
             A +V + M +  N   W A+++ C
Sbjct: 1404 EASKVVKSMPVEPNACVWGALLNSC 1428


>gi|357167761|ref|XP_003581320.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Brachypodium distachyon]
          Length = 773

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 184/560 (32%), Positives = 307/560 (54%), Gaps = 7/560 (1%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           SG   N+  + S ++AC         G  LH  A+K G     ++ ++L SMY+K    E
Sbjct: 215 SGARPNSRTMESGLEACG-VLGELSAGRCLHGYAVKEGIRDCALVVSALFSMYSKCDMTE 273

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
            A  LF E+  +D +SW  +I  + + G    ++E+F+EM   G      L++ ++S   
Sbjct: 274 DACILFPELTEKDVVSWTGLIGAYCRRGLAREAVELFQEMEQSGLQPDEVLVSCVLSGLG 333

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
               +  G+  HA VI+  +F  SV ++ +L+ +Y K     +A  VF  +  R++ SW+
Sbjct: 334 SSANVNRGKAFHA-VIIRRNFGDSVLIANSLISMYGKFELVDVAGTVFGMLHQRDDESWS 392

Query: 201 AMISGCIDSQNYDTGIDLFRAMQ---REGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
            M++G   +      ++L+R MQ    +       +L   + +C+ L  LR G+++H Y+
Sbjct: 393 LMVAGYCKAGLDVKCLELYRQMQCRDHDEFLCDITSLVSAISSCSRLGRLRLGQSVHCYS 452

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
             C  D ++ ++ +L+ MY  C       +I       +DVV W+++I  YS  G  ++A
Sbjct: 453 IKCLLD-ENSITNSLIGMYGRCGNFELACKIFAVAKLRRDVVTWNALISSYSHVGRSNDA 511

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
           + L+ +M  E ++PNS TL+ ++S+C   + L HG  +H Y+   GL  DVSI  AL++M
Sbjct: 512 LSLYGQMLTEDVKPNSSTLITVISACANLAALEHGELLHSYVKNMGLESDVSISTALVDM 571

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           Y+KCG + ++  IF+ M  RD V+W  +ISGYG HG   +AL+LF EM+   ++P+++T 
Sbjct: 572 YTKCGQLGTARGIFDSMLQRDVVTWNVMISGYGMHGEANQALKLFSEMEAGSIKPNSLTF 631

Query: 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
           LAILSAC HAGLV E   LF   M   ++   ++HYAC VDLLGKSG +++A  +V  MP
Sbjct: 632 LAILSACCHAGLVDEGRKLFIR-MGGYRLEPNLKHYACMVDLLGKSGLLQEAEDLVLAMP 690

Query: 498 MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEE 557
           +KP   +  +L+SAC++H   E+   +A +   ++P N   Y L+S     +  W   E+
Sbjct: 691 IKPDGGVWGTLLSACKVHDNFEMGLRVAKKAFSSDPRNDGYYILMSNSYGSAEKWDEIEK 750

Query: 558 VWRVMRAKGLSKSYGFSRIE 577
           +   M+  G+ K  G+S ++
Sbjct: 751 LRDTMKNYGVEKGVGWSAVD 770



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 133/511 (26%), Positives = 245/511 (47%), Gaps = 22/511 (4%)

Query: 48  LQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQN 107
           L+LH  A  SG  + P  +  L+S Y+    P  A   F   P  DT  WNS++      
Sbjct: 32  LRLHALASTSGLSSRPDFAAKLVSAYSSSGLPGFATLAFSASPCPDTFLWNSLLRSHHCA 91

Query: 108 GFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDG--SFELSV 165
             +  +L   R M   G            S  +++  L +G  +H+  +  G  + + SV
Sbjct: 92  SDFDSALSAHRRMRASGARPSRFTAPLAASAAAELAALPVGTSVHSYSVKFGLLAGDGSV 151

Query: 166 FVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGI----DLFRA 221
            VS++L+ +Y++C     A+++F++MV R+ V+WTA++SGC+ +     GI     + R 
Sbjct: 152 AVSSSLVYMYARCGSLGDAVKLFDEMVERDVVAWTAVVSGCVRNGECGKGICYLVQMIRL 211

Query: 222 MQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTE 281
               G +P   T+   L AC  L +L  G+ +HGYA   G      + +AL  MY +C +
Sbjct: 212 AGDSGARPNSRTMESGLEACGVLGELSAGRCLHGYAVKEGIRDCALVVSALFSMYSKC-D 270

Query: 282 ALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILS 341
               A I+F     KDVV W+ +I  Y + G   EA++LF  M    ++P+ V +  +LS
Sbjct: 271 MTEDACILFPELTEKDVVSWTGLIGAYCRRGLAREAVELFQEMEQSGLQPDEVLVSCVLS 330

Query: 342 SCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS 401
                + ++ G   H  I++      V I N+L++MY K   +  +  +F  +  RD  S
Sbjct: 331 GLGSSANVNRGKAFHAVIIRRNFGDSVLIANSLISMYGKFELVDVAGTVFGMLHQRDDES 390

Query: 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEP---DAITVLAILSACNHAGLVKEAETL-- 456
           W+ +++GY   G   + L+L+ +MQ    +    D  ++++ +S+C+  G ++  +++  
Sbjct: 391 WSLMVAGYCKAGLDVKCLELYRQMQCRDHDEFLCDITSLVSAISSCSRLGRLRLGQSVHC 450

Query: 457 --FNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRI 514
                ++ E  I  ++      + + G+ G  E ACK+ +   ++      ++L+S+   
Sbjct: 451 YSIKCLLDENSITNSL------IGMYGRCGNFELACKIFAVAKLRRDVVTWNALISSYSH 504

Query: 515 HGRLEVAEMLAHQLI--EAEPENAANYTLLS 543
            GR   A  L  Q++  + +P ++   T++S
Sbjct: 505 VGRSNDALSLYGQMLTEDVKPNSSTLITVIS 535


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 183/535 (34%), Positives = 293/535 (54%), Gaps = 8/535 (1%)

Query: 46  FGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT 105
            G Q+HC ALK G D    +SNSLI+MY K  K   A  +FD M  RD ISWNS+I    
Sbjct: 333 LGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIA 392

Query: 106 QNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGE-LELGRQIHALVIVDGSFELS 164
           QNG  V ++ +F ++  CG       +  ++   S + E L L +Q+H   I   +   S
Sbjct: 393 QNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDS 452

Query: 165 VFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR 224
            FVSTAL+D YS+      A  +FE+    + V+W AM++G   S +    + LF  M +
Sbjct: 453 -FVSTALIDAYSRNRCMKEAEILFERHNF-DLVAWNAMMAGYTQSHDGHKTLKLFALMHK 510

Query: 225 EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
           +G +    TL  V   C  L  +  GK +H YA   G+D D  +S+ ++ MY +C + + 
Sbjct: 511 QGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGD-MS 569

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTL--LAILSS 342
            A+  F+   V D V W+++I G  ++G+   A  +FS+MRL  + P+  T+  LA  SS
Sbjct: 570 AAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASS 629

Query: 343 CTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSW 402
           C   + L  G  +H   +K     D  +G +L++MY+KCGSI  ++ +F  +   +  +W
Sbjct: 630 CL--TALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAW 687

Query: 403 TTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462
             ++ G   HG G+E LQLF +M+  G++PD +T + +LSAC+H+GLV EA     ++  
Sbjct: 688 NAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHG 747

Query: 463 EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAE 522
           +  I   IEHY+C  D LG++G ++ A  ++ +M M+ S  +  +L++ACR+ G  E  +
Sbjct: 748 DYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGK 807

Query: 523 MLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +A +L+E EP +++ Y LLS + + +  W   +    +M+   + K  GFS IE
Sbjct: 808 RVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIE 862



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 113/448 (25%), Positives = 219/448 (48%), Gaps = 9/448 (2%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           GL  +   + SV+KA +          Q+H  A+K  + +D  +S +LI  Y++    + 
Sbjct: 411 GLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKE 470

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A  LF+   + D ++WN+++  +TQ+    ++L++F  M+  G       LA +   C  
Sbjct: 471 AEILFERHNF-DLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGF 529

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
           +  +  G+Q+HA  I  G ++L ++VS+ +LD+Y KC     A   F+ + + ++V+WT 
Sbjct: 530 LFAINQGKQVHAYAIKSG-YDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTT 588

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           MISGCI++   +    +F  M+  GV P   T+  +  A + L  L  G+ IH  A    
Sbjct: 589 MISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLN 648

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
              D  +  +L+ MY +C  ++  A  +F+R ++ ++  W++++ G +Q G+  E ++LF
Sbjct: 649 CTNDPFVGTSLVDMYAKCG-SIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLF 707

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA--GLNFDVSIGNALMNMYS 379
            +M+   I+P+ VT + +LS+C+    +S     H   M    G+  ++   + L +   
Sbjct: 708 KQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYK-HMRSMHGDYGIKPEIEHYSCLADALG 766

Query: 380 KCGSITSSHQIFNEMAARDFVS-WTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
           + G +  +  +   M+     S + TL++     G  E   ++  ++ E  +EP   +  
Sbjct: 767 RAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLE--LEPLDSSAY 824

Query: 439 AILSACNHAGLVKEAETLFNNVMKEKKI 466
            +LS    A    +   L   +MK  K+
Sbjct: 825 VLLSNMYAAASKWDEMKLARTMMKGHKV 852



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 187/400 (46%), Gaps = 43/400 (10%)

Query: 51  HCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFY 110
           H   L    + +  + N+LISMY+K      A ++FD+MP RD +SWNSI+  + Q+   
Sbjct: 62  HARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSEC 121

Query: 111 VRSLEMFREMYLCGFVLKAEL-------LAGIISLCSQIGELELGRQIHALVIVDGSFEL 163
           V  +E  ++ +L   +L+ ++       L+ ++ LC   G +      H      G  + 
Sbjct: 122 V--VENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIG-LDG 178

Query: 164 SVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQ 223
             FV+ AL+++Y K         +FE+M  R+ V W  M+   ++    +  IDL  A  
Sbjct: 179 DEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFH 238

Query: 224 REGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEAL 283
             G+ P  +TL ++                   A   G D D    A  +  +    +A 
Sbjct: 239 SSGLNPNEITLRLL-------------------ARISGDDSD----AGQVKSFANGNDAS 275

Query: 284 HPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC 343
             + IIF    + +          Y  SG  S  +K F+ M    +E + VT + +L++ 
Sbjct: 276 SVSEIIFRNKGLSE----------YLHSGQYSALLKCFADMVESDVECDQVTFILMLATA 325

Query: 344 TRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWT 403
            +   L+ G  VHC  +K GL+  +++ N+L+NMY K      +  +F+ M+ RD +SW 
Sbjct: 326 VKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWN 385

Query: 404 TLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
           ++I+G   +G   EA+ LF+++   G++PD  T+ ++L A
Sbjct: 386 SVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKA 425



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 120/514 (23%), Positives = 226/514 (43%), Gaps = 57/514 (11%)

Query: 18  LHPSGLYSNTAILPSVIKAC---AYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYA 74
           L    +Y++   L  ++K C    Y    + F    H  A K G D D  ++ +L+++Y 
Sbjct: 136 LRQDVVYTSRMTLSPMLKLCLHSGYVWASESF----HGYACKIGLDGDEFVAGALVNIYL 191

Query: 75  KFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF---VLKAEL 131
           KF K +    LF+EMPYRD + WN ++  + + GF   ++++    +  G     +   L
Sbjct: 192 KFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITLRL 251

Query: 132 LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM 191
           LA I    S  G+++           +G+   SV                        ++
Sbjct: 252 LARISGDDSDAGQVK--------SFANGNDASSV-----------------------SEI 280

Query: 192 VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGK 251
           + RN+      +S  + S  Y   +  F  M    V+  +VT  ++L    ++  L  G+
Sbjct: 281 IFRNK-----GLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQ 335

Query: 252 AIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQS 311
            +H  A   G D    +S +L++MYC+  +    AR +F+    +D++ W+S+I G +Q+
Sbjct: 336 QVHCMALKLGLDLMLTVSNSLINMYCKLRK-FGFARTVFDNMSERDLISWNSVIAGIAQN 394

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG----VHCYIMKAGLNFD 367
           G   EA+ LF ++    ++P+  T+ ++L +    S L  GL     VH + +K     D
Sbjct: 395 GLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAA---SSLPEGLSLSKQVHVHAIKINNVSD 451

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
             +  AL++ YS+   +  +  +F E    D V+W  +++GY     G + L+LF  M +
Sbjct: 452 SFVSTALIDAYSRNRCMKEAEILF-ERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHK 510

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487
            G   D  T+  +   C     + + + +    +K     L +   +  +D+  K G + 
Sbjct: 511 QGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKS-GYDLDLWVSSGILDMYVKCGDMS 569

Query: 488 DACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA 521
            A     ++P+ P     ++++S C  +G  E A
Sbjct: 570 AAQFAFDSIPV-PDDVAWTTMISGCIENGEEERA 602



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 106/214 (49%), Gaps = 9/214 (4%)

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
           DL  GK  H        + +  L   L+ MY +C  +L  AR +F++   +D+V W+SI+
Sbjct: 54  DLMLGKCTHARILTFEENPERFLINNLISMYSKCG-SLTYARRVFDKMPDRDLVSWNSIL 112

Query: 306 RGYSQSG-----DLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
             Y+QS      ++ +A  LF  +R + +  + +TL  +L  C    ++      H Y  
Sbjct: 113 AAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYAC 172

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
           K GL+ D  +  AL+N+Y K G +     +F EM  RD V W  ++  Y   G+ EEA+ 
Sbjct: 173 KIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAID 232

Query: 421 LFLEMQESGVEPDAIT--VLAILSACN-HAGLVK 451
           L      SG+ P+ IT  +LA +S  +  AG VK
Sbjct: 233 LSSAFHSSGLNPNEITLRLLARISGDDSDAGQVK 266



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 81/170 (47%), Gaps = 10/170 (5%)

Query: 337 LAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA 396
              L +    S L  G   H  I+    N +  + N L++MYSKCGS+T + ++F++M  
Sbjct: 43  FGFLRNAITSSDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPD 102

Query: 397 RDFVSWTTLISGYGFHGYG-----EEALQLFLEMQESGVEPDAITVLAILSACNHAGLVK 451
           RD VSW ++++ Y           ++A  LF  +++  V    +T+  +L  C H+G V 
Sbjct: 103 RDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVW 162

Query: 452 EAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDACKVVSTMPMK 499
            +E+         KI L  + +     V++  K GK+++   +   MP +
Sbjct: 163 ASESFHGYAC---KIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYR 209


>gi|242076082|ref|XP_002447977.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
 gi|241939160|gb|EES12305.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
          Length = 772

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 186/556 (33%), Positives = 305/556 (54%), Gaps = 8/556 (1%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           N+  + S ++AC       + G  LH  A+K G    P++ ++L SMY+K    E A  L
Sbjct: 218 NSRTMESGLEACGVLD-ELNSGRCLHGYAVKVGVGDSPMVISALFSMYSKCHSTEDACSL 276

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL 145
           F E+P +D +SW S+I  +   G    ++E+F+EM   G      L++ ++S     G +
Sbjct: 277 FPELPEKDVVSWTSLIGIYCWRGLIREAMELFQEMMESGLQPDDVLVSCLLSGLGNSGNV 336

Query: 146 ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISG 205
             G+  HA VI+  +F  +V V  AL+ +Y K      A RVF  +  R+  SW  MI G
Sbjct: 337 HGGKAFHA-VIMKRNFGDNVLVGNALISMYGKFELVDNAGRVFRLLHQRDADSWNLMIVG 395

Query: 206 CIDSQNYDTGIDLFRAMQREGVKP---TRVTLTIVLLACAELRDLRNGKAIHGYAYCCGF 262
              +      ++L+R MQ            +L   + +C+ L +LR G++ H Y+     
Sbjct: 396 YCKAGCDVKCLELYREMQFRDTYEFLCDANSLVSAISSCSRLVELRLGRSAHCYSIKHWL 455

Query: 263 DFDHHLSAALMHMYCECTEALHPARIIFERTKVK-DVVIWSSIIRGYSQSGDLSEAMKLF 321
           D D  ++  L+ MY  C +  H  +I F   K+K DVV W+++I  Y+  G  + A+ L+
Sbjct: 456 DEDSSVANVLIGMYGRCGKFDHACKI-FGLAKLKGDVVTWNTLISSYAHLGHSNTAVSLY 514

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
            +M  E + PNS TL+ ++S+C     L  G  +H Y+ + G ++DVSI  AL++MY+KC
Sbjct: 515 DQMLTEGLTPNSTTLITVISACANLVALERGEKIHSYVKEMGWDYDVSINTALIDMYAKC 574

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
           G + ++ +IF+ M   D V+W  +ISGYG HG  ++AL+LF +M+   ++P+ +T LAIL
Sbjct: 575 GQLGTARRIFDSMLQHDVVAWNVMISGYGMHGEAKQALELFGKMEGGSIKPNGVTFLAIL 634

Query: 442 SACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPS 501
           SAC H+GL++E   LF   M +  +   ++HYAC VDLLGKSG +++A  +V  MP++P 
Sbjct: 635 SACCHSGLLEEGRQLFTR-MGKYSLEPNLKHYACMVDLLGKSGHLQEAEDMVLAMPVEPD 693

Query: 502 TRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRV 561
             I  +L+SAC++H   E+   +A +   ++ EN   Y L+S     +  W   E++   
Sbjct: 694 GGIWGTLLSACKLHDDFEMGLRIAKKAFASDAENEGYYILISNSYGSAKKWDEIEKLREA 753

Query: 562 MRAKGLSKSYGFSRIE 577
           M+  G+ K  G+S ++
Sbjct: 754 MKNHGVQKGAGWSAVD 769



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 142/519 (27%), Positives = 240/519 (46%), Gaps = 35/519 (6%)

Query: 48  LQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQN 107
           L++H  A+ SG    P I   L+S Y+   +P  A   F   P  D   WNS+I      
Sbjct: 29  LRVHALAVTSGLSQRPDIVAKLVSAYSSAGRPGLAALAFSACPRPDAFLWNSLIRTHHCA 88

Query: 108 GFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHA------LVIVDGSF 161
             +V +L   R M           +    S  +++G L +G  +HA      L+ VDG  
Sbjct: 89  SDFVAALNAHRRMLASSARPSPFTVPLAASAAAELGALGVGASVHAYCVRYGLLAVDGG- 147

Query: 162 ELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTG----ID 217
             SV V ++L+ +Y++C     A+++FE+M  R+ V+WTA++SGC+ +     G    ++
Sbjct: 148 --SVAVPSSLVYMYARCGVVRDAVKLFEEMRERDVVAWTAVVSGCVRNGECGDGLRYLVE 205

Query: 218 LFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYC 277
           + R       +P   T+   L AC  L +L +G+ +HGYA   G      + +AL  MY 
Sbjct: 206 MVRLAGDGKARPNSRTMESGLEACGVLDELNSGRCLHGYAVKVGVGDSPMVISALFSMYS 265

Query: 278 ECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLL 337
           +C  +   A  +F     KDVV W+S+I  Y   G + EAM+LF  M    ++P+ V + 
Sbjct: 266 KC-HSTEDACSLFPELPEKDVVSWTSLIGIYCWRGLIREAMELFQEMMESGLQPDDVLVS 324

Query: 338 AILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR 397
            +LS       +  G   H  IMK     +V +GNAL++MY K   + ++ ++F  +  R
Sbjct: 325 CLLSGLGNSGNVHGGKAFHAVIMKRNFGDNVLVGNALISMYGKFELVDNAGRVFRLLHQR 384

Query: 398 DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP---DAITVLAILSACNHAGLVKEAE 454
           D  SW  +I GY   G   + L+L+ EMQ         DA ++++ +S+C+         
Sbjct: 385 DADSWNLMIVGYCKAGCDVKCLELYREMQFRDTYEFLCDANSLVSAISSCSR-------- 436

Query: 455 TLFNNVMKEKKIALAIEHY--------ACYVDLLGKSGKIEDACKVVSTMPMKPSTRILS 506
            L    +       +I+H+           + + G+ GK + ACK+     +K      +
Sbjct: 437 -LVELRLGRSAHCYSIKHWLDEDSSVANVLIGMYGRCGKFDHACKIFGLAKLKGDVVTWN 495

Query: 507 SLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV 545
           +L+S+    G    A  L  Q++  E     + TL++++
Sbjct: 496 TLISSYAHLGHSNTAVSLYDQML-TEGLTPNSTTLITVI 533


>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33680-like [Cucumis sativus]
          Length = 710

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 173/531 (32%), Positives = 298/531 (56%), Gaps = 2/531 (0%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           GLQ H  A+K+ +  D  + +SLI+MY K      A ++FD +P R+T+SW +II+ +  
Sbjct: 132 GLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAM 191

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
                 + E+F  M          +   ++S  +    +  G+QIH L + +G   ++  
Sbjct: 192 ERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLSIAS- 250

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           V  AL+ +Y KC     AL+ FE    +++++W+AMI+G   + +    ++LF  M   G
Sbjct: 251 VGNALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNG 310

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
            KP+  T   V+ AC+++  L  GK IHGY+   G++   +   AL+ MY +C  +L  A
Sbjct: 311 NKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCG-SLVDA 369

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
           R  F+  K  D+V+W+S+I GY+Q+G+   A+ L+ RM++ERI P+ +T+ ++L +C+  
Sbjct: 370 RKGFDYLKEPDIVLWTSMISGYAQNGENETALTLYCRMQMERIMPHELTMASVLRACSSL 429

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
           + L  G  +H   +K G + +V IG+AL  MY+KCGS+   + +F  M +RD ++W  +I
Sbjct: 430 AALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLVFRRMPSRDIMTWNAMI 489

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
           SG   +G G +AL+LF E++    +PD +T + +LSAC+H GLV+  +  F  ++ E  I
Sbjct: 490 SGLSQNGEGLKALELFEELRHGTTKPDYVTFVNVLSACSHMGLVERGKVYFRMMLDEFGI 549

Query: 467 ALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAH 526
              +EHYAC VD+L ++GK+ +  + + +  +     +   L+ ACR +   E+      
Sbjct: 550 VPRVEHYACMVDILSRAGKLHETKEFIESATIDHGMCLWRILLGACRNYRNYELGAYAGE 609

Query: 527 QLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +L+E   + ++ Y LLS + +  G     E V R+M+ +G++K  G S IE
Sbjct: 610 KLMELGSQESSAYILLSSIYTALGRSDDVERVRRLMKLRGVNKEPGCSWIE 660



 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 154/510 (30%), Positives = 253/510 (49%), Gaps = 13/510 (2%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G  +H   L++GS +   ++NSL+++YAK      A  +F+ +  +D +SWN +IN ++Q
Sbjct: 29  GKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLVFESITNKDVVSWNCLINGYSQ 88

Query: 107 NGF--YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELS 164
            G   Y   +E+F+ M     +      +G+ +  S   E   G Q HAL I   +F   
Sbjct: 89  KGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSSPETFGGLQAHALAIKTSNF-YD 147

Query: 165 VFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR 224
           VFV ++L+++Y K    L A +VF+ +  RN VSW  +ISG    +      +LF  M+R
Sbjct: 148 VFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAMERMAFEAWELFXLMRR 207

Query: 225 EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
           E     +   T VL A      +  GK IH  A   G      +  AL+ MY +C   L 
Sbjct: 208 EEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCG-CLD 266

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
            A   FE +  KD + WS++I GY+Q+GD  EA+ LF  M L   +P+  T + ++++C+
Sbjct: 267 DALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACS 326

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
               L  G  +H Y +KAG    +    AL++MY+KCGS+  + + F+ +   D V WT+
Sbjct: 327 DIGALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTS 386

Query: 405 LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK 464
           +ISGY  +G  E AL L+  MQ   + P  +T+ ++L AC+    +++ + +    +K  
Sbjct: 387 MISGYAQNGENETALTLYCRMQMERIMPHELTMASVLRACSSLAALEQGKQIHAQTIK-Y 445

Query: 465 KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGR----LEV 520
             +L +   +    +  K G +ED   V   MP +      ++++S    +G     LE+
Sbjct: 446 GFSLEVPIGSALSTMYAKCGSLEDGNLVFRRMPSR-DIMTWNAMISGLSQNGEGLKALEL 504

Query: 521 AEMLAHQLIEAEPENAANYTLLSMVCSESG 550
            E L H     +P+      +LS  CS  G
Sbjct: 505 FEELRHG--TTKPDYVTFVNVLS-ACSHMG 531



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 102/308 (33%), Positives = 172/308 (55%), Gaps = 2/308 (0%)

Query: 45  HFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCF 104
           H+G Q+HC ALK+G  +   + N+L++MY K    + A + F+    +D I+W+++I  +
Sbjct: 231 HYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGY 290

Query: 105 TQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELS 164
            Q G    +L +F  M+L G         G+I+ CS IG LE G+QIH   +  G +E  
Sbjct: 291 AQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAG-YECQ 349

Query: 165 VFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR 224
           ++  TAL+D+Y+KC   + A + F+ +   + V WT+MISG   +   +T + L+  MQ 
Sbjct: 350 IYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMISGYAQNGENETALTLYCRMQM 409

Query: 225 EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
           E + P  +T+  VL AC+ L  L  GK IH      GF  +  + +AL  MY +C  +L 
Sbjct: 410 ERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCG-SLE 468

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
              ++F R   +D++ W+++I G SQ+G+  +A++LF  +R    +P+ VT + +LS+C+
Sbjct: 469 DGNLVFRRMPSRDIMTWNAMISGLSQNGEGLKALELFEELRHGTTKPDYVTFVNVLSACS 528

Query: 345 RQSFLSHG 352
               +  G
Sbjct: 529 HMGLVERG 536



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 124/448 (27%), Positives = 219/448 (48%), Gaps = 31/448 (6%)

Query: 139 CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
           C++  +L+ G+ IHA ++  GSF  SV+++ +L++LY+KC   + A  VFE +  ++ VS
Sbjct: 20  CTRQKDLQKGKAIHAQLLRTGSFS-SVYLTNSLVNLYAKCGSIVKAKLVFESITNKDVVS 78

Query: 199 WTAMISGCID--SQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           W  +I+G     +  Y   ++LF+ M+ E   P   T + V  A +   +   G   H  
Sbjct: 79  WNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSSPETFGGLQAHAL 138

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
           A      +D  + ++L++MYC+    L  AR +F+    ++ V W++II GY+      E
Sbjct: 139 AIKTSNFYDVFVGSSLINMYCKIGCML-DARKVFDTIPERNTVSWATIISGYAMERMAFE 197

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
           A +LF  MR E    +     ++LS+ T    + +G  +HC  +K GL    S+GNAL+ 
Sbjct: 198 AWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASVGNALVT 257

Query: 377 MYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAIT 436
           MY KCG +  + + F     +D ++W+ +I+GY   G   EAL LF  M  +G +P   T
Sbjct: 258 MYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFT 317

Query: 437 VLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
            + +++AC+  G ++E + +    +K       I      VD+  K G + DA K    +
Sbjct: 318 FVGVINACSDIGALEEGKQIHGYSLK-AGYECQIYFMTALVDMYAKCGSLVDARKGFDYL 376

Query: 497 PMKPSTRILSSLVS----------ACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546
             +P   + +S++S          A  ++ R+++  ++ H+L  A    A +    S+  
Sbjct: 377 K-EPDIVLWTSMISGYAQNGENETALTLYCRMQMERIMPHELTMASVLRACS----SLAA 431

Query: 547 SESGNWLGAEEVWRVMRAKGLSKSYGFS 574
            E G  + A+ +            YGFS
Sbjct: 432 LEQGKQIHAQTI-----------KYGFS 448



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 85/268 (31%), Positives = 137/268 (51%), Gaps = 4/268 (1%)

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           + P   +   +LL C   +DL+ GKAIH      G     +L+ +L+++Y +C  ++  A
Sbjct: 6   LPPQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCG-SIVKA 64

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDL--SEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
           +++FE    KDVV W+ +I GYSQ G +  S  M+LF RMR E   PN  T   + ++ +
Sbjct: 65  KLVFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAAS 124

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
                  GL  H   +K    +DV +G++L+NMY K G +  + ++F+ +  R+ VSW T
Sbjct: 125 SSPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWAT 184

Query: 405 LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK 464
           +ISGY       EA +LF  M+      D     ++LSA     LV   + +    +K  
Sbjct: 185 IISGYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNG 244

Query: 465 KIALAIEHYACYVDLLGKSGKIEDACKV 492
            +++A    A  V + GK G ++DA K 
Sbjct: 245 LLSIASVGNA-LVTMYGKCGCLDDALKT 271



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 90/189 (47%), Gaps = 21/189 (11%)

Query: 324 MRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS 383
           M L  + P   + + +L  CTRQ  L  G  +H  +++ G    V + N+L+N+Y+KCGS
Sbjct: 1   MNLYLLPPQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGS 60

Query: 384 ITSSHQIFNEMAARDFVSWTTLISGY---GFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
           I  +  +F  +  +D VSW  LI+GY   G  GY    ++LF  M+     P+  T   +
Sbjct: 61  IVKAKLVFESITNKDVVSWNCLINGYSQKGTVGY-SFVMELFQRMRAENTLPNGHTFSGV 119

Query: 441 LSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS--------GKIEDACKV 492
            +A + +      ET F  +      ALAI+    Y   +G S        G + DA KV
Sbjct: 120 FTAASSS-----PET-FGGLQAH---ALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKV 170

Query: 493 VSTMPMKPS 501
             T+P + +
Sbjct: 171 FDTIPERNT 179


>gi|15233482|ref|NP_192346.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75214457|sp|Q9XE98.1|PP303_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g04370
 gi|4982476|gb|AAD36944.1|AF069441_4 hypothetical protein [Arabidopsis thaliana]
 gi|7267194|emb|CAB77905.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656985|gb|AEE82385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 729

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 171/529 (32%), Positives = 300/529 (56%), Gaps = 3/529 (0%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           LH  A+  G D D  + NS++++Y K      A  LFD+M  RD +SWN++I+ +   G 
Sbjct: 166 LHDFAVIYGFDCDIAVMNSMLNLYCKCDHVGDAKDLFDQMEQRDMVSWNTMISGYASVGN 225

Query: 110 YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVST 169
               L++   M   G     +     +S+   + +LE+GR +H  ++  G F++ + + T
Sbjct: 226 MSEILKLLYRMRGDGLRPDQQTFGASLSVSGTMCDLEMGRMLHCQIVKTG-FDVDMHLKT 284

Query: 170 ALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKP 229
           AL+ +Y KC     + RV E +  ++ V WT MISG +     +  + +F  M + G   
Sbjct: 285 ALITMYLKCGKEEASYRVLETIPNKDVVCWTVMISGLMRLGRAEKALIVFSEMLQSGSDL 344

Query: 230 TRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARII 289
           +   +  V+ +CA+L     G ++HGY    G+  D     +L+ MY +C   L  + +I
Sbjct: 345 SSEAIASVVASCAQLGSFDLGASVHGYVLRHGYTLDTPALNSLITMYAKCGH-LDKSLVI 403

Query: 290 FERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP-NSVTLLAILSSCTRQSF 348
           FER   +D+V W++II GY+Q+ DL +A+ LF  M+ + ++  +S T++++L +C+    
Sbjct: 404 FERMNERDLVSWNAIISGYAQNVDLCKALLLFEEMKFKTVQQVDSFTVVSLLQACSSAGA 463

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
           L  G  +HC ++++ +     +  AL++MYSKCG + ++ + F+ ++ +D VSW  LI+G
Sbjct: 464 LPVGKLIHCIVIRSFIRPCSLVDTALVDMYSKCGYLEAAQRCFDSISWKDVVSWGILIAG 523

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468
           YGFHG G+ AL+++ E   SG+EP+ +  LA+LS+C+H G+V++   +F++++++  +  
Sbjct: 524 YGFHGKGDIALEIYSEFLHSGMEPNHVIFLAVLSSCSHNGMVQQGLKIFSSMVRDFGVEP 583

Query: 469 AIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
             EH AC VDLL ++ +IEDA K       +PS  +L  ++ ACR +G+ EV +++   +
Sbjct: 584 NHEHLACVVDLLCRAKRIEDAFKFYKENFTRPSIDVLGIILDACRANGKTEVEDIICEDM 643

Query: 529 IEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           IE +P +A +Y  L    +    W    E W  MR+ GL K  G+S+IE
Sbjct: 644 IELKPGDAGHYVKLGHSFAAMKRWDDVSESWNQMRSLGLKKLPGWSKIE 692



 Score =  237 bits (604), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 168/551 (30%), Positives = 280/551 (50%), Gaps = 21/551 (3%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           ++Q L  +   L  + L  +T   PS++KACA  Q    FGL +H   L +G  +D  IS
Sbjct: 27  HKQVLSTFSSML-ANKLLPDTFTFPSLLKACASLQ-RLSFGLSIHQQVLVNGFSSDFYIS 84

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF- 125
           +SL+++YAKF     A ++F+EM  RD + W ++I C+++ G    +  +  EM   G  
Sbjct: 85  SSLVNLYAKFGLLAHARKVFEEMRERDVVHWTAMIGCYSRAGIVGEACSLVNEMRFQGIK 144

Query: 126 ---VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL 182
              V   E+L+G++    +I +L+    +H   ++ G F+  + V  ++L+LY KC H  
Sbjct: 145 PGPVTLLEMLSGVL----EITQLQC---LHDFAVIYG-FDCDIAVMNSMLNLYCKCDHVG 196

Query: 183 IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
            A  +F+QM  R+ VSW  MISG     N    + L   M+ +G++P + T    L    
Sbjct: 197 DAKDLFDQMEQRDMVSWNTMISGYASVGNMSEILKLLYRMRGDGLRPDQQTFGASLSVSG 256

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
            + DL  G+ +H      GFD D HL  AL+ MY +C +     R++ E    KDVV W+
Sbjct: 257 TMCDLEMGRMLHCQIVKTGFDVDMHLKTALITMYLKCGKEEASYRVL-ETIPNKDVVCWT 315

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
            +I G  + G   +A+ +FS M     + +S  + ++++SC +      G  VH Y+++ 
Sbjct: 316 VMISGLMRLGRAEKALIVFSEMLQSGSDLSSEAIASVVASCAQLGSFDLGASVHGYVLRH 375

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
           G   D    N+L+ MY+KCG +  S  IF  M  RD VSW  +ISGY  +    +AL LF
Sbjct: 376 GYTLDTPALNSLITMYAKCGHLDKSLVIFERMNERDLVSWNAIISGYAQNVDLCKALLLF 435

Query: 423 LEMQESGVEP-DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
            EM+   V+  D+ TV+++L AC+ AG +   + +   V++      ++   A  VD+  
Sbjct: 436 EEMKFKTVQQVDSFTVVSLLQACSSAGALPVGKLIHCIVIRSFIRPCSLVDTA-LVDMYS 494

Query: 482 KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANY 539
           K G +E A +   ++  K        L++    HG+ ++A  +  + + +  EP +    
Sbjct: 495 KCGYLEAAQRCFDSISWKDVVS-WGILIAGYGFHGKGDIALEIYSEFLHSGMEPNHVIFL 553

Query: 540 TLLSMVCSESG 550
            +LS  CS +G
Sbjct: 554 AVLS-SCSHNG 563



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 111/353 (31%), Positives = 191/353 (54%), Gaps = 7/353 (1%)

Query: 97  WNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVI 156
           +NS IN  + +G + + L  F  M     +        ++  C+ +  L  G  IH  V+
Sbjct: 14  FNSHINHLSSHGDHKQVLSTFSSMLANKLLPDTFTFPSLLKACASLQRLSFGLSIHQQVL 73

Query: 157 VDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQN-YDTG 215
           V+G F    ++S++L++LY+K      A +VFE+M  R+ V WTAMI GC          
Sbjct: 74  VNG-FSSDFYISSSLVNLYAKFGLLAHARKVFEEMRERDVVHWTAMI-GCYSRAGIVGEA 131

Query: 216 IDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHM 275
             L   M+ +G+KP  VTL  +L    E+  L   + +H +A   GFD D  +  +++++
Sbjct: 132 CSLVNEMRFQGIKPGPVTLLEMLSGVLEITQL---QCLHDFAVIYGFDCDIAVMNSMLNL 188

Query: 276 YCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVT 335
           YC+C + +  A+ +F++ + +D+V W+++I GY+  G++SE +KL  RMR + + P+  T
Sbjct: 189 YCKC-DHVGDAKDLFDQMEQRDMVSWNTMISGYASVGNMSEILKLLYRMRGDGLRPDQQT 247

Query: 336 LLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA 395
             A LS       L  G  +HC I+K G + D+ +  AL+ MY KCG   +S+++   + 
Sbjct: 248 FGASLSVSGTMCDLEMGRMLHCQIVKTGFDVDMHLKTALITMYLKCGKEEASYRVLETIP 307

Query: 396 ARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG 448
            +D V WT +ISG    G  E+AL +F EM +SG +  +  + +++++C   G
Sbjct: 308 NKDVVCWTVMISGLMRLGRAEKALIVFSEMLQSGSDLSSEAIASVVASCAQLG 360



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 100/315 (31%), Positives = 164/315 (52%), Gaps = 13/315 (4%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G  LHC  +K+G D D  +  +LI+MY K  K E++Y++ + +P +D + W  +I+   +
Sbjct: 264 GRMLHCQIVKTGFDVDMHLKTALITMYLKCGKEEASYRVLETIPNKDVVCWTVMISGLMR 323

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
            G   ++L +F EM   G  L +E +A +++ C+Q+G  +LG  +H  V+  G + L   
Sbjct: 324 LGRAEKALIVFSEMLQSGSDLSSEAIASVVASCAQLGSFDLGASVHGYVLRHG-YTLDTP 382

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
              +L+ +Y+KC H   +L +FE+M  R+ VSW A+ISG   + +    + LF  M+ + 
Sbjct: 383 ALNSLITMYAKCGHLDKSLVIFERMNERDLVSWNAIISGYAQNVDLCKALLLFEEMKFKT 442

Query: 227 VKPT-RVTLTIVLLACAELRDLRNGKAIH-----GYAYCCGFDFDHHLSAALMHMYCECT 280
           V+     T+  +L AC+    L  GK IH      +   C       +  AL+ MY +C 
Sbjct: 443 VQQVDSFTVVSLLQACSSAGALPVGKLIHCIVIRSFIRPCSL-----VDTALVDMYSKCG 497

Query: 281 EALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAIL 340
             L  A+  F+    KDVV W  +I GY   G    A++++S      +EPN V  LA+L
Sbjct: 498 -YLEAAQRCFDSISWKDVVSWGILIAGYGFHGKGDIALEIYSEFLHSGMEPNHVIFLAVL 556

Query: 341 SSCTRQSFLSHGLGV 355
           SSC+    +  GL +
Sbjct: 557 SSCSHNGMVQQGLKI 571



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/223 (21%), Positives = 98/223 (43%), Gaps = 22/223 (9%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPY 91
           S+++AC+ A      G  +HC  ++S      ++  +L+ MY+K    E+A + FD + +
Sbjct: 453 SLLQACSSAGALP-VGKLIHCIVIRSFIRPCSLVDTALVDMYSKCGYLEAAQRCFDSISW 511

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQI 151
           +D +SW  +I  +  +G    +LE++ E    G      +   ++S CS  G ++ G +I
Sbjct: 512 KDVVSWGILIAGYGFHGKGDIALEIYSEFLHSGMEPNHVIFLAVLSSCSHNGMVQQGLKI 571

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQN 211
            + ++ D   E +      ++DL  +      A + +++   R  +    +I        
Sbjct: 572 FSSMVRDFGVEPNHEHLACVVDLLCRAKRIEDAFKFYKENFTRPSIDVLGII-------- 623

Query: 212 YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
               +D  RA  +  V+          + C ++ +L+ G A H
Sbjct: 624 ----LDACRANGKTEVED---------IICEDMIELKPGDAGH 653


>gi|147846491|emb|CAN79511.1| hypothetical protein VITISV_014157 [Vitis vinifera]
          Length = 1007

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 174/538 (32%), Positives = 301/538 (55%), Gaps = 7/538 (1%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           N + L   I AC      +  GL++H   ++SG    P + NSL+SMYA  +  E A +L
Sbjct: 149 NVSTLVLAIHACRSLGAMEE-GLKMHGYIIRSGFLDIPSVQNSLLSMYAD-NDMERAEEL 206

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV-LKAELLAGIISLCSQIGE 144
           FDEM  RD ISW+ +I  + Q G    +L++F EM     + L    +  ++  C+  G+
Sbjct: 207 FDEMCERDVISWSVMIGGYVQTGEAXMALQLFLEMXSNAXIELDGITMVSVLKACANTGD 266

Query: 145 LELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMIS 204
           + +GR +H +VI  G  +  +FV  +++D+YSK      A + F +M  RN VSW ++IS
Sbjct: 267 ISMGRSVHGVVICRG-LDYDLFVGNSIIDMYSKXDDHESAFKAFNEMPCRNTVSWNSIIS 325

Query: 205 GCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDF 264
           G + ++ +   + LF +M + G +   VTL  +L +C    D    K IH      G++ 
Sbjct: 326 GLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGYEL 385

Query: 265 DHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM 324
           +  +  +L+  Y +C + +  A  +F+R K KD V WS++I G++  G   EA+ LF  M
Sbjct: 386 NEFVINSLIDAYSKC-DLIELAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQEM 444

Query: 325 RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSI 384
              + +PN VT+L++L + +  + L      H   ++ GL  +V++G A+++MY+KCG I
Sbjct: 445 NQAQEKPNGVTILSLLEAFSVSADLKRSKWAHGIXIRRGLAAEVAVGTAILDMYAKCGEI 504

Query: 385 TSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
             S + F+++  ++ VSW  +I+  G +G   +AL L  EM+  G++P+ +T L++LSAC
Sbjct: 505 GLSRKAFDQIPEKNIVSWGAMIAACGMNGLARDALALLSEMKLHGLKPNXVTTLSVLSAC 564

Query: 445 NHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP--MKPST 502
           +H GLV+E  + F N++++  +   +EHY+C VD+L ++GK+  A  ++  MP  M+   
Sbjct: 565 SHGGLVEEGLSFFENMVQDHGVEPGLEHYSCMVDMLXRAGKLNXAMNLIEKMPERMRDGA 624

Query: 503 RILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWR 560
            +  +L+SACR  G   +    A +++  EP+++A Y L S + + SG     ++ WR
Sbjct: 625 GLWGALLSACRSSGNSRLGAGAAXRVLXLEPQSSAGYFLASSMYAASGLVHVEDKAWR 682



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 144/542 (26%), Positives = 263/542 (48%), Gaps = 15/542 (2%)

Query: 14  YKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMY 73
           Y Q        ++  ++ S++KAC+        G  +H + LK G D+     NS    Y
Sbjct: 37  YHQMKKAGAQLTDPTLVHSILKACSSLPVRH--GKSIHASLLKQGFDSLTSTGNSXXDFY 94

Query: 74  AKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLA 133
            K    +SA  +FD M  RD++SWN +I+     G     L  FR+  +  F      L 
Sbjct: 95  MKTGALDSALFVFDSMRSRDSVSWNIMIHGHLSRGASDXGLWWFRQARVIAFEPNVSTLV 154

Query: 134 GIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI 193
             I  C  +G +E G ++H  +I  G  ++   V  +LL +Y+  +    A  +F++M  
Sbjct: 155 LAIHACRSLGAMEEGLKMHGYIIRSGFLDIPS-VQNSLLSMYAD-NDMERAEELFDEMCE 212

Query: 194 RNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG-VKPTRVTLTIVLLACAELRDLRNGKA 252
           R+ +SW+ MI G + +      + LF  M     ++   +T+  VL ACA   D+  G++
Sbjct: 213 RDVISWSVMIGGYVQTGEAXMALQLFLEMXSNAXIELDGITMVSVLKACANTGDISMGRS 272

Query: 253 IHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSG 312
           +HG   C G D+D  +  +++ MY +  +    A   F     ++ V W+SII G  ++ 
Sbjct: 273 VHGVVICRGLDYDLFVGNSIIDMYSKXDDH-ESAFKAFNEMPCRNTVSWNSIISGLVRTE 331

Query: 313 DLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN 372
             SEA+ LF  M       + VTL+ +L SC           +H  +++ G   +  + N
Sbjct: 332 KHSEALSLFYSMGKAGFRADEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGYELNEFVIN 391

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
           +L++ YSKC  I  + ++F+ +  +D VSW+ +I+G+   G  +EA+ LF EM ++  +P
Sbjct: 392 SLIDAYSKCDLIELAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQEMNQAQEKP 451

Query: 433 DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKV 492
           + +T+L++L A + +  +K ++   + +   + +A  +      +D+  K G+I  + K 
Sbjct: 452 NGVTILSLLEAFSVSADLKRSKWA-HGIXIRRGLAAEVAVGTAILDMYAKCGEIGLSRKA 510

Query: 493 VSTMPMKPSTRILS--SLVSACRIHG--RLEVAEMLAHQLIEAEPENAANYTLLSMVCSE 548
              +P K    I+S  ++++AC ++G  R  +A +   +L   +P      ++LS  CS 
Sbjct: 511 FDQIPEK---NIVSWGAMIAACGMNGLARDALALLSEMKLHGLKPNXVTTLSVLS-ACSH 566

Query: 549 SG 550
            G
Sbjct: 567 GG 568



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 72/142 (50%), Gaps = 2/142 (1%)

Query: 313 DLSEAMKLFSRMRLERIEPNSVTLL-AILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
           D  EA   + +M+    +    TL+ +IL +C+    + HG  +H  ++K G +   S G
Sbjct: 29  DSWEACSRYHQMKKAGAQLTDPTLVHSILKACSSLP-VRHGKSIHASLLKQGFDSLTSTG 87

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
           N+  + Y K G++ S+  +F+ M +RD VSW  +I G+   G  +  L  F + +    E
Sbjct: 88  NSXXDFYMKTGALDSALFVFDSMRSRDSVSWNIMIHGHLSRGASDXGLWWFRQARVIAFE 147

Query: 432 PDAITVLAILSACNHAGLVKEA 453
           P+  T++  + AC   G ++E 
Sbjct: 148 PNVSTLVLAIHACRSLGAMEEG 169


>gi|15231798|ref|NP_190904.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174119|sp|Q9LFI1.1|PP280_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53360, mitochondrial; Flags: Precursor
 gi|6729487|emb|CAB67643.1| putative protein [Arabidopsis thaliana]
 gi|332645554|gb|AEE79075.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 768

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 191/573 (33%), Positives = 307/573 (53%), Gaps = 6/573 (1%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           + + LY + L    L  +     S+IKACA + +    G QLH   +K  S +  +  N+
Sbjct: 151 EAIRLYLKMLQED-LVPDQFAFGSIIKACA-SSSDVGLGKQLHAQVIKLESSSHLIAQNA 208

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           LI+MY +F++   A ++F  +P +D ISW+SII  F+Q GF   +L   +EM   G    
Sbjct: 209 LIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHP 268

Query: 129 AELLAGI-ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
            E + G  +  CS +   + G QIH L I       +     +L D+Y++C     A RV
Sbjct: 269 NEYIFGSSLKACSSLLRPDYGSQIHGLCI-KSELAGNAIAGCSLCDMYARCGFLNSARRV 327

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F+Q+   +  SW  +I+G  ++   D  + +F  M+  G  P  ++L  +L A  +   L
Sbjct: 328 FDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMAL 387

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK-DVVIWSSIIR 306
             G  IH Y    GF  D  +  +L+ MY  C++ L+    +FE  +   D V W++I+ 
Sbjct: 388 SQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSD-LYCCFNLFEDFRNNADSVSWNTILT 446

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
              Q     E ++LF  M +   EP+ +T+  +L  C   S L  G  VHCY +K GL  
Sbjct: 447 ACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAP 506

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           +  I N L++MY+KCGS+  + +IF+ M  RD VSW+TLI GY   G+GEEAL LF EM+
Sbjct: 507 EQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMK 566

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
            +G+EP+ +T + +L+AC+H GLV+E   L+  +  E  I+   EH +C VDLL ++G++
Sbjct: 567 SAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQTEHGISPTKEHCSCVVDLLARAGRL 626

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546
            +A + +  M ++P   +  +L+SAC+  G + +A+  A  +++ +P N+  + LL  + 
Sbjct: 627 NEAERFIDEMKLEPDVVVWKTLLSACKTQGNVHLAQKAAENILKIDPFNSTAHVLLCSMH 686

Query: 547 SESGNWLGAEEVWRVMRAKGLSKSYGFSRIENE 579
           + SGNW  A  +   M+   + K  G S IE E
Sbjct: 687 ASSGNWENAALLRSSMKKHDVKKIPGQSWIEIE 719



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 135/501 (26%), Positives = 236/501 (47%), Gaps = 12/501 (2%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           +   +FY + L  +      S          S+I AC+ +++    G ++H   L S   
Sbjct: 41  LCKSNFYREALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQ-GRKIHDHILNSNCK 99

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
            D +++N ++SMY K      A ++FD MP R+ +S+ S+I  ++QNG    ++ ++ +M
Sbjct: 100 YDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKM 159

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVI-VDGSFELSVFVSTALLDLYSKCH 179
                V        II  C+   ++ LG+Q+HA VI ++ S  L      AL+ +Y + +
Sbjct: 160 LQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHL--IAQNALIAMYVRFN 217

Query: 180 HWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV-KPTRVTLTIVL 238
               A RVF  + +++ +SW+++I+G          +   + M   GV  P        L
Sbjct: 218 QMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSL 277

Query: 239 LACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDV 298
            AC+ L     G  IHG         +     +L  MY  C   L+ AR +F++ +  D 
Sbjct: 278 KACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCG-FLNSARRVFDQIERPDT 336

Query: 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCY 358
             W+ II G + +G   EA+ +FS+MR     P++++L ++L + T+   LS G+ +H Y
Sbjct: 337 ASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHSY 396

Query: 359 IMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFHGYGEE 417
           I+K G   D+++ N+L+ MY+ C  +     +F +     D VSW T+++    H    E
Sbjct: 397 IIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQHEQPVE 456

Query: 418 ALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY--AC 475
            L+LF  M  S  EPD IT+  +L  C     +K    +    +   K  LA E +    
Sbjct: 457 MLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSL---KTGLAPEQFIKNG 513

Query: 476 YVDLLGKSGKIEDACKVVSTM 496
            +D+  K G +  A ++  +M
Sbjct: 514 LIDMYAKCGSLGQARRIFDSM 534



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 129/256 (50%), Gaps = 3/256 (1%)

Query: 192 VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLL-ACAELRDLRNG 250
            I+ E      I+    S  Y   ++ F   Q+      R+   I L+ AC+  R L  G
Sbjct: 27  TIKTEELMNDHINSLCKSNFYREALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQG 86

Query: 251 KAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQ 310
           + IH +       +D  L+  ++ MY +C  +L  AR +F+    +++V ++S+I GYSQ
Sbjct: 87  RKIHDHILNSNCKYDTILNNHILSMYGKCG-SLRDAREVFDFMPERNLVSYTSVITGYSQ 145

Query: 311 SGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSI 370
           +G  +EA++L+ +M  E + P+     +I+ +C   S +  G  +H  ++K   +  +  
Sbjct: 146 NGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIA 205

Query: 371 GNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV 430
            NAL+ MY +   ++ + ++F  +  +D +SW+++I+G+   G+  EAL    EM   GV
Sbjct: 206 QNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGV 265

Query: 431 -EPDAITVLAILSACN 445
             P+     + L AC+
Sbjct: 266 FHPNEYIFGSSLKACS 281



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 94/165 (56%), Gaps = 1/165 (0%)

Query: 335 TLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEM 394
           T ++++ +C+    L+ G  +H +I+ +   +D  + N +++MY KCGS+  + ++F+ M
Sbjct: 69  TYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFM 128

Query: 395 AARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAE 454
             R+ VS+T++I+GY  +G G EA++L+L+M +  + PD     +I+ AC  +  V   +
Sbjct: 129 PERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGK 188

Query: 455 TLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
            L   V+K +  +  I   A  + +  +  ++ DA +V   +PMK
Sbjct: 189 QLHAQVIKLESSSHLIAQNA-LIAMYVRFNQMSDASRVFYGIPMK 232


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  318 bits (816), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 180/583 (30%), Positives = 302/583 (51%), Gaps = 38/583 (6%)

Query: 31  PSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKP-----ESAYQL 85
           PS     A  +T +H   Q+H   L+S  D   ++   L+        P     + A  L
Sbjct: 13  PSEKGLLASCKTLRHVK-QIHAQILRSKMDNSNLLLLKLVLCCCTLPSPSPSALDYALSL 71

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL 145
           F  +P   T   N ++  F++      +L ++  +   GF L       ++   S++  L
Sbjct: 72  FSHIPNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSAL 131

Query: 146 ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISG 205
            LG +IH L    G F    F+ +AL+ +Y+ C   + A  +F++M  R+ V+W  MI G
Sbjct: 132 NLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDG 191

Query: 206 CIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFD 265
              + +YD  + L+  M+  G +P  + L  VL ACA   +L  GKAIH +    GF   
Sbjct: 192 YSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVG 251

Query: 266 HHLSAALMHMYCECTEALH-------------------------------PARIIFERTK 294
            H+  +L++MY  C  A+H                                AR IF+R  
Sbjct: 252 SHIQTSLVNMYANCG-AMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMV 310

Query: 295 VKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG 354
            KD+V WS++I GY++S    EA++LF+ M+  RI P+ +T+L+++S+C     L     
Sbjct: 311 EKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKW 370

Query: 355 VHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGY 414
           +H Y  K G    + I NAL++MY+KCG++  + ++F  M  ++ +SW+++I+ +  HG 
Sbjct: 371 IHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGD 430

Query: 415 GEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYA 474
            + A+ LF  M+E  +EP+ +T + +L AC+HAGLV+E +  F++++ E +I+   EHY 
Sbjct: 431 ADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYG 490

Query: 475 CYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPE 534
           C VDL  ++  +  A +++ TMP  P+  I  SL+SAC+ HG +E+ E  A +L+E EP+
Sbjct: 491 CMVDLYCRANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGEIELGEFAATRLLELEPD 550

Query: 535 NAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +     +LS + ++   W     V ++M+ KG+SK    SRIE
Sbjct: 551 HDGALVVLSNIYAKEKRWDDVGLVRKLMKHKGVSKEKACSRIE 593


>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
          Length = 954

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 189/615 (30%), Positives = 317/615 (51%), Gaps = 83/615 (13%)

Query: 42  THQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMP---YRDTISWN 98
           +  H   Q+H   + +GS     ++  ++S+YA F     A ++F+  P   + + + WN
Sbjct: 45  SKSHLSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWN 104

Query: 99  SIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVD 158
           SI+     +G+   +LE++  M   G          +I  C+ +G  +L R +H  V+  
Sbjct: 105 SILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEM 164

Query: 159 GSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYD--TGI 216
           G F+ ++ V   L+ +Y K      A +VFE+M +R+ VSW  M+SG   + NYD     
Sbjct: 165 G-FQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGY--ALNYDCHGAS 221

Query: 217 DLFRAMQREGVKPTRVT-----------------------------------LTIVLLAC 241
           ++FR M   G++P  VT                                   L +VL   
Sbjct: 222 EMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVS 281

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKD---- 297
            +L     GK IHGY    GF+    +  +L+ +Y +    ++ ARI+F   K K+    
Sbjct: 282 VDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGN-VNAARILFLEIKTKNIVSW 340

Query: 298 -----------------------------------VVIWSSIIRGYSQSGDLSEAMKLFS 322
                                              VV WS++I G++  G   EA++LF 
Sbjct: 341 NALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFR 400

Query: 323 RMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCG 382
           RM+L +++ NSVT+ ++LS C   + L  G  +H +++++ ++ ++ +GN L+NMY+K G
Sbjct: 401 RMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSG 460

Query: 383 SITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILS 442
           S    + +F ++  +D +SW T+++GYG HG GE A++ F +M + G EPD +T +A+LS
Sbjct: 461 SFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLS 520

Query: 443 ACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPST 502
           AC+HAGLV E   LF+ ++KE ++   +EHYAC VDLLG++G +++A KVV +MP++P+ 
Sbjct: 521 ACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNA 580

Query: 503 RILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVM 562
            +  +L+++CR+H   EVAE  A Q+     E A +Y LLS + + SG W  + +V    
Sbjct: 581 CVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVRISA 640

Query: 563 RAKGLSKSYGFSRIE 577
           + KGL K+ G S I+
Sbjct: 641 KTKGLKKTPGQSWIQ 655



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 172/370 (46%), Gaps = 44/370 (11%)

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR-- 194
            L  Q  +  L +QIH+ +IV GS   S F++  ++ +Y+       A RVFE   I   
Sbjct: 39  DLLQQCSKSHLSQQIHSQIIVTGSHR-SAFLAARVVSVYAGFGLVSDAQRVFEVSPIECF 97

Query: 195 -NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAI 253
            N + W +++   +     +  ++++  M++ GV     T  +V+ ACA +   +  +++
Sbjct: 98  SNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSV 157

Query: 254 HGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY----- 308
           HG+    GF ++ H+   LM MY +    +  AR +FER  V+  V W++++ GY     
Sbjct: 158 HGHVVEMGFQWNLHVGNELMGMYGKIGR-MDDARKVFERMAVRSCVSWNTMVSGYALNYD 216

Query: 309 ------------------------------SQSGDLSEAMKLFSRMRLERIEPNSVTLLA 338
                                         ++ G   E M+LF RMR+  I   +  L  
Sbjct: 217 CHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAV 276

Query: 339 ILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARD 398
           +LS     +    G  +H Y++K G    + + N+L+ +Y K G++ ++  +F E+  ++
Sbjct: 277 VLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKN 336

Query: 399 FVSWTTLISGYGFHGYGEEALQLFLEMQESG----VEPDAITVLAILSACNHAGLVKEAE 454
            VSW  LIS Y   G+ +EA  +FL+++++     V P+ ++  A++      G  +EA 
Sbjct: 337 IVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEAL 396

Query: 455 TLFNNVMKEK 464
            LF  +   K
Sbjct: 397 ELFRRMQLAK 406



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 102/213 (47%), Gaps = 3/213 (1%)

Query: 3   SKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDAD 62
           SK   E+ L L+++ +  + + +N+  + SV+  CA      H G ++H   ++S  D +
Sbjct: 388 SKGQGEEALELFRR-MQLAKVKANSVTIASVLSVCAELAA-LHLGREIHGHVVRSLMDGN 445

Query: 63  PVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL 122
            ++ N LI+MY K    +    +F+++  +D ISWN+++  +  +G    ++  F +M  
Sbjct: 446 ILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIK 505

Query: 123 CGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL 182
            GF         ++S CS  G +  GR++   +I +   E  +     ++DL  +     
Sbjct: 506 DGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQ 565

Query: 183 IALRVFEQMVIR-NEVSWTAMISGCIDSQNYDT 214
            A +V + M +  N   W A+++ C   +N + 
Sbjct: 566 EASKVVKSMPVEPNACVWGALLNSCRMHKNTEV 598


>gi|115473985|ref|NP_001060591.1| Os07g0670000 [Oryza sativa Japonica Group]
 gi|22831115|dbj|BAC15976.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
 gi|50510078|dbj|BAD30730.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
 gi|113612127|dbj|BAF22505.1| Os07g0670000 [Oryza sativa Japonica Group]
 gi|125559550|gb|EAZ05086.1| hypothetical protein OsI_27276 [Oryza sativa Indica Group]
          Length = 726

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 181/561 (32%), Positives = 298/561 (53%), Gaps = 12/561 (2%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           SG     A+  +V  + A  +       QLH  A +SG  AD  + N+L++ Y++     
Sbjct: 124 SGAVRPDAVTCTVALSLAAGRGEGFLVRQLHALAWRSGLAADVFVGNALVTAYSRGGSLG 183

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGF-YVRSLEMFREMYLCGFVLKAEL-LAGIISL 138
            A  +FD+MP RD +SWN++I    Q+G      + +F  M   G V    + +  +I  
Sbjct: 184 EARSVFDDMPARDLVSWNALICGLAQDGDCPAEVIGVFLRMLRDGDVQPDRISVCSVIPA 243

Query: 139 CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
           C   G+LELGRQ+H   +  G  E  V +   L+ +Y KC     A R+F+ M  R+ VS
Sbjct: 244 CGGEGKLELGRQVHGFAVKLG-VEGYVSIGNVLVAMYYKCGAPGSARRLFDAMSERDVVS 302

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258
           WT  IS  +D ++    + LF  M+R+GV P  VT   ++ A       R  + +H    
Sbjct: 303 WTTAIS--MDGED---ALTLFNGMRRDGVPPNEVTFVALMSALPADCPARGAQMVHAACL 357

Query: 259 CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAM 318
                 +   S +L+ MY +    +  AR++F+    ++++ W+++I GY+Q+G  ++A+
Sbjct: 358 KAAVSGEAAASNSLITMYAKARR-MDDARMVFDLMPRREIIAWNAVISGYAQNGRCNDAL 416

Query: 319 KLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG--VHCYIMKAGLNFDVSIGNALMN 376
           +LFS M    + PN  T  ++LS+ T    +S   G   H   +  G      +  AL++
Sbjct: 417 ELFSSM-ARCLTPNETTFASVLSAVTAVETVSMAYGQMYHSRALSMGFGDSEYVAGALID 475

Query: 377 MYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAIT 436
           MY+K G++  S + F+E   R  ++WT +IS    HG     + LF +M  SGV PD + 
Sbjct: 476 MYAKRGNLEESRKAFHETEQRSLIAWTAIISANARHGSYGAVMSLFGDMARSGVAPDGVV 535

Query: 437 VLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
           +LA+L+AC + G+V     +F+++  ++ + L  EHY+C VD+LG++G++ +A +++  M
Sbjct: 536 LLAVLTACRYGGMVDAGRDIFDSMAADRGVELWPEHYSCVVDMLGRAGRLAEAEELMMRM 595

Query: 497 PMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAE 556
           P  PS   L SL+ ACRIHG  E+ E +A  L E EP  +  Y LLS + ++ G+W G  
Sbjct: 596 PAGPSVSALQSLLGACRIHGDAEIGERIARILTEKEPTESGAYVLLSNIYADVGDWDGVA 655

Query: 557 EVWRVMRAKGLSKSYGFSRIE 577
           +V R MR +G+ K  GFS ++
Sbjct: 656 KVRRKMRDRGVKKEIGFSWVD 676



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 146/514 (28%), Positives = 242/514 (47%), Gaps = 28/514 (5%)

Query: 12  HLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLIS 71
           H +    HPS L  +  + P    A   A         LH  A+ +G      ++NSL +
Sbjct: 18  HPFDGIPHPS-LARHRRVNPIAFSAAVRASDPASL-PALHAVAVTTGLHGFAAVTNSLAA 75

Query: 72  MYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAEL 131
            YAK     SA  +F     RD  S+N+I++ F        +L+    M   G V    +
Sbjct: 76  RYAKTGSFPSAVGVFAAARARDVSSYNTILSAFPDP---AEALDFASWMLRSGAVRPDAV 132

Query: 132 LAGI-ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQ 190
              + +SL +  GE  L RQ+HAL    G     VFV  AL+  YS+      A  VF+ 
Sbjct: 133 TCTVALSLAAGRGEGFLVRQLHALAWRSG-LAADVFVGNALVTAYSRGGSLGEARSVFDD 191

Query: 191 MVIRNEVSWTAMISGCIDSQNYDTG---IDLFRAMQREG-VKPTRVTLTIVLLACAELRD 246
           M  R+ VSW A+I G   +Q+ D     I +F  M R+G V+P R+++  V+ AC     
Sbjct: 192 MPARDLVSWNALICGL--AQDGDCPAEVIGVFLRMLRDGDVQPDRISVCSVIPACGGEGK 249

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L  G+ +HG+A   G +    +   L+ MY +C  A   AR +F+    +DVV W++ I 
Sbjct: 250 LELGRQVHGFAVKLGVEGYVSIGNVLVAMYYKCG-APGSARRLFDAMSERDVVSWTTAI- 307

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
               S D  +A+ LF+ MR + + PN VT +A++S+            VH   +KA ++ 
Sbjct: 308 ----SMDGEDALTLFNGMRRDGVPPNEVTFVALMSALPADCPARGAQMVHAACLKAAVSG 363

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           + +  N+L+ MY+K   +  +  +F+ M  R+ ++W  +ISGY  +G   +AL+LF  M 
Sbjct: 364 EAAASNSLITMYAKARRMDDARMVFDLMPRREIIAWNAVISGYAQNGRCNDALELFSSMA 423

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAI---EHYA-CYVDLLGK 482
              + P+  T  ++LSA      V+     +  +   + +++     E+ A   +D+  K
Sbjct: 424 RC-LTPNETTFASVLSAVT---AVETVSMAYGQMYHSRALSMGFGDSEYVAGALIDMYAK 479

Query: 483 SGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG 516
            G +E++ K       + S    ++++SA   HG
Sbjct: 480 RGNLEESRKAFHETEQR-SLIAWTAIISANARHG 512


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 194/622 (31%), Positives = 326/622 (52%), Gaps = 67/622 (10%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           +G   +   LP  +KAC    ++   G  LH     +G +++  + N+L++MY++    E
Sbjct: 143 AGTKPDHFTLPYALKACGELPSYC-CGRALHGLICCNGFESNVFVCNALVAMYSRCGSLE 201

Query: 81  SAYQLFDEMPYR---DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS 137
            A  +FDE+  +   D ISWNSI+    +      +LE+F EM +          + IIS
Sbjct: 202 DASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIIS 261

Query: 138 L------CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM 191
           +      C+ +  L   ++IH+  I +G+F    FV  AL+D Y+KC     A++VF  M
Sbjct: 262 IVNILPACASLKALPQIKEIHSYAIRNGTFA-DAFVCNALIDTYAKCGSMNDAVKVFNVM 320

Query: 192 VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE-------------------------- 225
             ++ VSW AM++G   S N+    +LF  M++E                          
Sbjct: 321 EFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEAL 380

Query: 226 ---------GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC-CGFDFDHHLSA----- 270
                    G +P  VT+  +L ACA L  L  G  IH Y+   C    D+         
Sbjct: 381 DAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGE 440

Query: 271 ------ALMHMYCECTEALHPARIIFERT--KVKDVVIWSSIIRGYSQSGDLSEAMKLFS 322
                 AL+ MY +C  +   AR IF+    + ++VV W+ +I GY+Q GD ++A+K+FS
Sbjct: 441 DLMVYNALIDMYSKC-RSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFS 499

Query: 323 RM--RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSI---GNALMNM 377
            M  +   + PN+ T+  IL +C   + L  G  +H Y+ +    ++ S+    N L++M
Sbjct: 500 EMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHH-EYEPSVYFVANCLIDM 558

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           YSKCG + ++  +F+ M  R+ VSWT+++SGYG HG G+EAL +F +MQ++G  PD I+ 
Sbjct: 559 YSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISF 618

Query: 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
           L +L AC+H+G+V +    F+ + ++  +  + EHYAC +DLL + G+++ A K +  MP
Sbjct: 619 LVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMP 678

Query: 498 MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEE 557
           M+PS  I  +L+SACR+H  +E+AE   ++L+  + EN  +YTL+S + + +  W     
Sbjct: 679 MEPSAVIWVALLSACRVHSNVELAEYALNKLVNMKAENDGSYTLISNIYANARRWKDVAR 738

Query: 558 VWRVMRAKGLSKSYGFSRIENE 579
           + ++M+  G+ K  G S ++ +
Sbjct: 739 IRQLMKKSGIKKRPGCSWVQGK 760



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 147/549 (26%), Positives = 258/549 (46%), Gaps = 67/549 (12%)

Query: 65  ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG 124
           +   +++ Y      + A  + + +     + WN ++    + G   R++ +   M   G
Sbjct: 85  LGTGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAG 144

Query: 125 FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
                  L   +  C ++     GR +H L+  +G FE +VFV  AL+ +YS+C     A
Sbjct: 145 TKPDHFTLPYALKACGELPSYCCGRALHGLICCNG-FESNVFVCNALVAMYSRCGSLEDA 203

Query: 185 LRVFEQMV---IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQ---REGVKPTR---VTLT 235
             VF+++    I + +SW ++++  +   N  T ++LF  M     E     R   +++ 
Sbjct: 204 SLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIV 263

Query: 236 IVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV 295
            +L ACA L+ L   K IH YA   G   D  +  AL+  Y +C  +++ A  +F   + 
Sbjct: 264 NILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCG-SMNDAVKVFNVMEF 322

Query: 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI-------------------------- 329
           KDVV W++++ GY+QSG+   A +LF  MR E I                          
Sbjct: 323 KDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDA 382

Query: 330 ---------EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL------------NFDV 368
                    EPNSVT++++LS+C     LS G+ +H Y +K  L              D+
Sbjct: 383 FQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDL 442

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMA--ARDFVSWTTLISGYGFHGYGEEALQLFLEM- 425
            + NAL++MYSKC S  ++  IF+ +    R+ V+WT +I GY  +G   +AL++F EM 
Sbjct: 443 MVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMI 502

Query: 426 -QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYA-CYVDLLGKS 483
            +   V P+A T+  IL AC H   ++  + +   V +  +   ++   A C +D+  K 
Sbjct: 503 SKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKC 562

Query: 484 GKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE--PENAANYTL 541
           G ++ A  V  +MP +      +S++S   +HGR + A  +  ++ +A   P++ + + +
Sbjct: 563 GDVDTARNVFDSMPKRNEVS-WTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDIS-FLV 620

Query: 542 LSMVCSESG 550
           L   CS SG
Sbjct: 621 LLYACSHSG 629



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 99/352 (28%), Positives = 163/352 (46%), Gaps = 58/352 (16%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKS------------GSDADP 63
           Q++   G   N+  + S++ ACA        G+++H  +LK             G   D 
Sbjct: 384 QQMILDGSEPNSVTIISLLSACASLGALSQ-GMEIHAYSLKKCLLSLDNDFGGDGDGEDL 442

Query: 64  VISNSLISMYAKFSKPESAYQLFDEMPY--RDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           ++ N+LI MY+K    ++A  +FD +P   R+ ++W  +I  + Q G    +L++F EM 
Sbjct: 443 MVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMI 502

Query: 122 LCGFVL--KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSV-FVSTALLDLYSKC 178
              + +   A  ++ I+  C+ +  L +G+QIHA V     +E SV FV+  L+D+YSKC
Sbjct: 503 SKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKC 562

Query: 179 HHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVL 238
                A  VF+ M  RNEVSWT+M+SG          +D+F  MQ+ G  P  ++  ++L
Sbjct: 563 GDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLL 622

Query: 239 LACAELRDLRNGKAIHGYAYCCGFDF---DHHLSAALMHMYCECTEALHPARIIFERTKV 295
            AC+      +G    G  Y   FD    D+ + A+  H  C                  
Sbjct: 623 YACSH-----SGMVDQGLNY---FDIMRRDYDVVASAEHYAC------------------ 656

Query: 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQS 347
                   +I   ++ G L +A K    M +   EP++V  +A+LS+C   S
Sbjct: 657 --------VIDLLARCGRLDKAWKTIQEMPM---EPSAVIWVALLSACRVHS 697


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 176/572 (30%), Positives = 308/572 (53%), Gaps = 5/572 (0%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           Y++ L ++ Q +    +        +++ ACA  ++ +  G+++H   L+ G + D  + 
Sbjct: 86  YDRALGMFYQ-MQEEDVMPTKVTYVAILNACASTESLKD-GMEIHGQILQQGFEGDVFVG 143

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
            +LI+MY K      A+  F  + +RD +SW ++I    Q+  +  +  ++R M L G V
Sbjct: 144 TALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVV 203

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
                L  + +       L  G+ ++ LV   G  E  V V  + ++++        A R
Sbjct: 204 PNKITLYTVFNAYGDPNYLSEGKFVYGLV-SSGVMESDVRVMNSAVNMFGNAGLLGDARR 262

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           +FE MV R+ V+W  +I+  + ++N+   + LF  +Q++GVK   +T  ++L     L  
Sbjct: 263 LFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTSLTS 322

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L  GK IH      G+D D  ++ ALM +Y  C EA   A  IF     KDV+ W+ +  
Sbjct: 323 LAKGKVIHELVKEAGYDRDAVVATALMSLYGRC-EAPGQAWKIFVDMGSKDVITWTVMCV 381

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
            Y+Q+G   EA++LF  M+LE   P S TL+A+L +C   + L  G  +H +I++     
Sbjct: 382 AYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRFRM 441

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           ++ +  AL+NMY KCG +  +  +F +MA RD + W +++  Y  HGY +E LQLF +MQ
Sbjct: 442 EMVVETALINMYGKCGKMAEAMSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQ 501

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
             GV+ DA++ +++LSA +H+G V +    F  ++++  I    E Y C VDLLG++G+I
Sbjct: 502 LDGVKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRI 561

Query: 487 EDACKVVSTMP-MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV 545
           ++A  +V  +    P   +  +L+ ACR H + + A+  A Q++E +P ++  Y +LS V
Sbjct: 562 QEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNV 621

Query: 546 CSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            + +G+W G   + ++MR++G+ K  G S IE
Sbjct: 622 YAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIE 653



 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 148/528 (28%), Positives = 279/528 (52%), Gaps = 8/528 (1%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           +TA   ++++ C+ A+   H G ++H      G + + ++   LI MYA+      A Q+
Sbjct: 3   DTAFFVALLQRCSSAKNVDH-GRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQV 61

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL 145
           F+ +  +D  +W  +I  + Q G Y R+L MF +M     +        I++ C+    L
Sbjct: 62  FEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESL 121

Query: 146 ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISG 205
           + G +IH  ++  G FE  VFV TAL+++Y+KC     A   F+++  R+ VSWTAMI+ 
Sbjct: 122 KDGMEIHGQILQQG-FEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAA 180

Query: 206 CIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFD 265
           C+    +     L+R MQ +GV P ++TL  V  A  +   L  GK ++G       + D
Sbjct: 181 CVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVMESD 240

Query: 266 HHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR 325
             +  + ++M+      L  AR +FE    +DVV W+ +I  Y Q+ +  EA++LF R++
Sbjct: 241 VRVMNSAVNMFGNAG-LLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQ 299

Query: 326 LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSIT 385
            + ++ N +T + +L+  T  + L+ G  +H  + +AG + D  +  ALM++Y +C +  
Sbjct: 300 QDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPG 359

Query: 386 SSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
            + +IF +M ++D ++WT +   Y  +G+ +EALQLF EMQ  G  P + T++A+L  C 
Sbjct: 360 QAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCA 419

Query: 446 HAGLVKEAETLFNNVMKEK-KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRI 504
           H   +++   + +++++ + ++ + +E     +++ GK GK+ +A  V   M  K    +
Sbjct: 420 HLAALQKGRQIHSHIIENRFRMEMVVE--TALINMYGKCGKMAEAMSVFEKMA-KRDILV 476

Query: 505 LSSLVSACRIHGRLEVAEMLAHQL-IEAEPENAANYTLLSMVCSESGN 551
            +S++ A   HG  +    L +Q+ ++    +A ++  +    S SG+
Sbjct: 477 WNSMLGAYAQHGYYDETLQLFNQMQLDGVKADAVSFVSVLSALSHSGS 524



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 139/269 (51%), Gaps = 2/269 (0%)

Query: 228 KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPAR 287
           KP       +L  C+  +++ +G+ +H +    GF+ ++ +   L+ MY +C  ++  A+
Sbjct: 1   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCG-SVPEAQ 59

Query: 288 IIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQS 347
            +FE  + KDV  W+ +I  Y Q GD   A+ +F +M+ E + P  VT +AIL++C    
Sbjct: 60  QVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTE 119

Query: 348 FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLIS 407
            L  G+ +H  I++ G   DV +G AL+NMY+KCGS+  +   F  +  RD VSWT +I+
Sbjct: 120 SLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIA 179

Query: 408 GYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIA 467
               H     A  L+  MQ  GV P+ IT+  + +A      + E + ++  ++    + 
Sbjct: 180 ACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVY-GLVSSGVME 238

Query: 468 LAIEHYACYVDLLGKSGKIEDACKVVSTM 496
             +      V++ G +G + DA ++   M
Sbjct: 239 SDVRVMNSAVNMFGNAGLLGDARRLFEDM 267


>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
          Length = 708

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 189/615 (30%), Positives = 317/615 (51%), Gaps = 83/615 (13%)

Query: 42  THQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMP---YRDTISWN 98
           +  H   Q+H   + +GS     ++  ++S+YA F     A ++F+  P   + + + WN
Sbjct: 45  SKSHLSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWN 104

Query: 99  SIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVD 158
           SI+     +G+   +LE++  M   G          +I  C+ +G  +L R +H  V+  
Sbjct: 105 SILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEM 164

Query: 159 GSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYD--TGI 216
           G F+ ++ V   L+ +Y K      A +VFE+M +R+ VSW  M+SG   + NYD     
Sbjct: 165 G-FQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGY--ALNYDCHGAS 221

Query: 217 DLFRAMQREGVKPTRVT-----------------------------------LTIVLLAC 241
           ++FR M   G++P  VT                                   L +VL   
Sbjct: 222 EMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVS 281

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKD---- 297
            +L     GK IHGY    GF+    +  +L+ +Y +    ++ ARI+F   K K+    
Sbjct: 282 VDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGN-VNAARILFLEIKTKNIVSW 340

Query: 298 -----------------------------------VVIWSSIIRGYSQSGDLSEAMKLFS 322
                                              VV WS++I G++  G   EA++LF 
Sbjct: 341 NALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFR 400

Query: 323 RMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCG 382
           RM+L +++ NSVT+ ++LS C   + L  G  +H +++++ ++ ++ +GN L+NMY+K G
Sbjct: 401 RMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSG 460

Query: 383 SITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILS 442
           S    + +F ++  +D +SW T+++GYG HG GE A++ F +M + G EPD +T +A+LS
Sbjct: 461 SFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLS 520

Query: 443 ACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPST 502
           AC+HAGLV E   LF+ ++KE ++   +EHYAC VDLLG++G +++A KVV +MP++P+ 
Sbjct: 521 ACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNA 580

Query: 503 RILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVM 562
            +  +L+++CR+H   EVAE  A Q+     E A +Y LLS + + SG W  + +V    
Sbjct: 581 CVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVRISA 640

Query: 563 RAKGLSKSYGFSRIE 577
           + KGL K+ G S I+
Sbjct: 641 KTKGLKKTPGQSWIQ 655



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 172/369 (46%), Gaps = 44/369 (11%)

Query: 138 LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR--- 194
           L  Q  +  L +QIH+ +IV GS   S F++  ++ +Y+       A RVFE   I    
Sbjct: 40  LLQQCSKSHLSQQIHSQIIVTGSHR-SAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFS 98

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
           N + W +++   +     +  ++++  M++ GV     T  +V+ ACA +   +  +++H
Sbjct: 99  NLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVH 158

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY------ 308
           G+    GF ++ H+   LM MY +    +  AR +FER  V+  V W++++ GY      
Sbjct: 159 GHVVEMGFQWNLHVGNELMGMYGKIGR-MDDARKVFERMAVRSCVSWNTMVSGYALNYDC 217

Query: 309 -----------------------------SQSGDLSEAMKLFSRMRLERIEPNSVTLLAI 339
                                        ++ G   E M+LF RMR+  I   +  L  +
Sbjct: 218 HGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVV 277

Query: 340 LSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDF 399
           LS     +    G  +H Y++K G    + + N+L+ +Y K G++ ++  +F E+  ++ 
Sbjct: 278 LSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNI 337

Query: 400 VSWTTLISGYGFHGYGEEALQLFLEMQESG----VEPDAITVLAILSACNHAGLVKEAET 455
           VSW  LIS Y   G+ +EA  +FL+++++     V P+ ++  A++      G  +EA  
Sbjct: 338 VSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALE 397

Query: 456 LFNNVMKEK 464
           LF  +   K
Sbjct: 398 LFRRMQLAK 406



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 102/213 (47%), Gaps = 3/213 (1%)

Query: 3   SKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDAD 62
           SK   E+ L L+++ +  + + +N+  + SV+  CA      H G ++H   ++S  D +
Sbjct: 388 SKGQGEEALELFRR-MQLAKVKANSVTIASVLSVCAELAA-LHLGREIHGHVVRSLMDGN 445

Query: 63  PVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL 122
            ++ N LI+MY K    +    +F+++  +D ISWN+++  +  +G    ++  F +M  
Sbjct: 446 ILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIK 505

Query: 123 CGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL 182
            GF         ++S CS  G +  GR++   +I +   E  +     ++DL  +     
Sbjct: 506 DGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQ 565

Query: 183 IALRVFEQMVIR-NEVSWTAMISGCIDSQNYDT 214
            A +V + M +  N   W A+++ C   +N + 
Sbjct: 566 EASKVVKSMPVEPNACVWGALLNSCRMHKNTEV 598


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 189/621 (30%), Positives = 312/621 (50%), Gaps = 62/621 (9%)

Query: 16   QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
            +ELH  G+  ++ +    +K C         G+++H   +K G D D  +  +L++ Y +
Sbjct: 663  KELHGKGVVFDSEVYSVALKTCTRVMD-IWLGMEIHGCLIKRGFDLDVYLRCALMNFYGR 721

Query: 76   FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
                E A Q+F EMP  + + WN  I    Q+    + +E+FR+M       +   +  +
Sbjct: 722  CWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRV 781

Query: 136  ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
            +  C ++G L   +QIH  V   G  +  V +   L+ +YSK     +A RVF+ M  RN
Sbjct: 782  LQACGKMGALNAAKQIHGYVFRFG-LDSDVSLCNPLISMYSKNGKLELARRVFDSMENRN 840

Query: 196  EVSWTAMIS------------------------------GCIDSQNYDTG-----IDLFR 220
              SW +MIS                               C+ S ++  G     +++ +
Sbjct: 841  TSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQ 900

Query: 221  AMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECT 280
             MQ EG KP   ++T VL A +EL  L  GK  HGY    GFD D ++  +L+ MY +  
Sbjct: 901  RMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVK-N 959

Query: 281  EALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP--------- 331
             +L  A+ +F+  K +++  W+S++ GYS  G   +A++L ++M  E I+P         
Sbjct: 960  HSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMI 1019

Query: 332  ---------------NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
                           NS ++  +L +C   S L  G  +HC  ++ G   DV +  AL++
Sbjct: 1020 SGYAMWGCARKAFMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALID 1079

Query: 377  MYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAIT 436
            MYSK  S+ ++H++F  +  +   SW  +I G+   G G+EA+ +F EMQ+ GV PDAIT
Sbjct: 1080 MYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAIT 1139

Query: 437  VLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
              A+LSAC ++GL+ E    F++++ + +I   +EHY C VDLLG++G +++A  ++ TM
Sbjct: 1140 FTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTM 1199

Query: 497  PMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAE 556
            P+KP   I  +L+ +CRIH  L  AE  A  L + EP N+ANY L+  + S    W   +
Sbjct: 1200 PLKPDATIWGALLGSCRIHKNLXFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMD 1259

Query: 557  EVWRVMRAKGLSKSYGFSRIE 577
             +  +M A G+     +S I+
Sbjct: 1260 HLRELMGAAGVRNRQVWSWIQ 1280



 Score =  198 bits (503), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 124/424 (29%), Positives = 213/424 (50%), Gaps = 38/424 (8%)

Query: 66   SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQN-GFYVRSLEMFREMYLCG 124
            + +LIS Y  F    SA  +F     R+ + WNS +  F  + G     LE+F+E++  G
Sbjct: 610  AKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKG 669

Query: 125  FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
             V  +E+ +  +  C+++ ++ LG +IH  +I  G F+L V++  AL++ Y +C     A
Sbjct: 670  VVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRG-FDLDVYLRCALMNFYGRCWGLEKA 728

Query: 185  LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
             +VF +M     + W   I   + S+    G++LFR MQ   +K    T+  VL AC ++
Sbjct: 729  NQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKM 788

Query: 245  RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
              L   K IHGY +  G D D  L   L+ MY +    L  AR +F+  + ++   W+S+
Sbjct: 789  GALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSK-NGKLELARRVFDSMENRNTSSWNSM 847

Query: 305  IRGYSQSGDLSEAMKLF-----------------------------------SRMRLERI 329
            I  Y+  G L++A  LF                                    RM+ E  
Sbjct: 848  ISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGF 907

Query: 330  EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
            +PNS ++ ++L + +   FL+ G   H Y+++ G + DV +G +L++MY K  S+ S+  
Sbjct: 908  KPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQA 967

Query: 390  IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL 449
            +F+ M  R+  +W +L+SGY F G  E+AL+L  +M++ G++PD +T   ++S     G 
Sbjct: 968  VFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGC 1027

Query: 450  VKEA 453
             ++A
Sbjct: 1028 ARKA 1031



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 162/376 (43%), Gaps = 75/376 (19%)

Query: 1    MVSKHFYEQTLHLYKQE-------LHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCT 53
            ++S HF    LH YK+E       +   G   N++ + SV++A +      + G + H  
Sbjct: 882  LLSGHF----LHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAIS-ELGFLNMGKETHGY 936

Query: 54   ALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRS 113
             L++G D D  +  SLI MY K     SA  +FD M  R+  +WNS+++ ++  G +  +
Sbjct: 937  VLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDA 996

Query: 114  LEMFREMYLCGFVLKAELLA--GIIS------------------------LCSQIGELEL 147
            L +  +M   G  +K +L+   G+IS                         C+ +  L+ 
Sbjct: 997  LRLLNQMEKEG--IKPDLVTWNGMISGYAMWGCARKAFMPNSASITCLLRACASLSLLQK 1054

Query: 148  GRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCI 207
            G++IH L I +G  E  VFV+TAL+D+YSK      A +VF ++  +   SW  MI G  
Sbjct: 1055 GKEIHCLSIRNGFIE-DVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFA 1113

Query: 208  DSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
                    I +F  MQ+ GV P  +T T +L AC       +G    G+ Y      D+ 
Sbjct: 1114 IFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKN-----SGLIGEGWKYFDSMITDYR 1168

Query: 268  LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
            +   L H YC   + L                          ++G L EA  L   M L 
Sbjct: 1169 IVPRLEH-YCCMVDLL-------------------------GRAGYLDEAWDLIHTMPL- 1201

Query: 328  RIEPNSVTLLAILSSC 343
              +P++    A+L SC
Sbjct: 1202 --KPDATIWGALLGSC 1215


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 192/602 (31%), Positives = 305/602 (50%), Gaps = 41/602 (6%)

Query: 10  TLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSL 69
           TLH       P  L  N   L +++  C   Q  +    Q+H   +K+G        + L
Sbjct: 16  TLHFQPTSDPPYKLLQNHPSL-TLLSTCKSFQNLK----QIHSQIIKTGLHNTQFALSKL 70

Query: 70  ISMYA--KFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           I   A   F     A  LF+ +   +   WN++I   + +   V +++ +  M LCG   
Sbjct: 71  IEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEP 130

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW------ 181
            +     ++  C+++G  + G+QIH  V+  G  E   FV T+L+++Y++          
Sbjct: 131 NSYTFPFLLKSCAKVGATQEGKQIHGHVLKLG-LESDPFVHTSLINMYAQNGELGYAELV 189

Query: 182 --------------LI-----------ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGI 216
                         LI           A R+FE++ +R+ VSW AMI+G   S  ++  +
Sbjct: 190 FSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEAL 249

Query: 217 DLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMY 276
             F+ M+R  V P   T+  VL ACA+   L  G  +  +    G   +  L  AL+ MY
Sbjct: 250 AFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMY 309

Query: 277 CECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTL 336
            +C + L  AR +FE    KD++ W+ +I GYS      EA+ LF +M+   +EPN VT 
Sbjct: 310 SKCGD-LDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTF 368

Query: 337 LAILSSCTRQSFLSHGLGVHCYIMKAGLNF-DVSIGNALMNMYSKCGSITSSHQIFNEMA 395
           ++IL +C     L  G  +H YI K  L   + S+  +L++MY+KCG+I ++ Q+F  M 
Sbjct: 369 VSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMK 428

Query: 396 ARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAET 455
            +   SW  +ISG   HG+   AL+LF +M++ G EPD IT + +LSAC+HAGLV+    
Sbjct: 429 PKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQ 488

Query: 456 LFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIH 515
            F++++++  I+  ++HY C +DLLG++G  ++A  ++  M MKP   I  SL+ ACR+H
Sbjct: 489 CFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVH 548

Query: 516 GRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSR 575
           G +E+ E  A  L E EPEN   Y LLS + + +G W     +   +  KG+ K  G S 
Sbjct: 549 GNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSS 608

Query: 576 IE 577
           IE
Sbjct: 609 IE 610


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 185/517 (35%), Positives = 295/517 (57%), Gaps = 10/517 (1%)

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           N+LI+ YAK S    A ++FDE+P  D +S+N++I  +   G    +L +F E+      
Sbjct: 79  NTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFEEVRELRLG 138

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
           L    L+G+I+ C    ++ L RQ+H  V+V G  +    V+ A+L  YS+      A R
Sbjct: 139 LDGFTLSGVITACGD--DVGLVRQLHCFVVVCGH-DCYASVNNAVLACYSRKGFLSEARR 195

Query: 187 VFEQMVI---RNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
           VF +M     R+EVSW AMI  C   +     + LFR M R G+K    T+  VL A   
Sbjct: 196 VFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASVLTAFTC 255

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
           ++DL  G+  HG     GF  + H+ + L+ +Y +C  ++   R +FE     D+V+W++
Sbjct: 256 VKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAPDLVLWNT 315

Query: 304 IIRGYSQSGDLSE-AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
           +I G+S   DLSE  +  F  M+     P+  + + + S+C+  S  S G  VH   +K+
Sbjct: 316 MISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGKQVHALAIKS 375

Query: 363 GLNFD-VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
            + ++ VS+ NAL+ MYSKCG++  + ++F+ M   + VS  ++I+GY  HG   E+L+L
Sbjct: 376 DVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQHGVEVESLRL 435

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK-IALAIEHYACYVDLL 480
           F  M E  + P++IT +A+LSAC H G V+E +  FN +MKE+  I    EHY+C +DLL
Sbjct: 436 FELMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFN-MMKERFCIEPEAEHYSCMIDLL 494

Query: 481 GKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYT 540
           G++GK+++A +++ TMP  P +   ++L+ ACR HG +E+A   A++ +  EP NAA Y 
Sbjct: 495 GRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLRLEPYNAAPYV 554

Query: 541 LLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +LS + + +  W  A  V R+MR +G+ K  G S IE
Sbjct: 555 MLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIE 591



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 110/244 (45%), Gaps = 35/244 (14%)

Query: 233 TLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECT------------ 280
           T   +L AC   RDL  GK +H   +        +LS     +Y +C             
Sbjct: 11  TFRNLLKACIAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFHLT 70

Query: 281 ------------------EALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFS 322
                               +H AR +F+     D+V ++++I  Y+  G+    ++LF 
Sbjct: 71  QYPNVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFE 130

Query: 323 RMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCG 382
            +R  R+  +  TL  ++++C     L   L  HC+++  G +   S+ NA++  YS+ G
Sbjct: 131 EVRELRLGLDGFTLSGVITACGDDVGLVRQL--HCFVVVCGHDCYASVNNAVLACYSRKG 188

Query: 383 SITSSHQIFNEM---AARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
            ++ + ++F EM     RD VSW  +I   G H  G EA+ LF EM   G++ D  T+ +
Sbjct: 189 FLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMAS 248

Query: 440 ILSA 443
           +L+A
Sbjct: 249 VLTA 252



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 3/203 (1%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPV-ISNSLISMYA 74
           +E+  +G   +      V  AC+   +    G Q+H  A+KS    + V ++N+L++MY+
Sbjct: 335 REMQRNGFRPDDCSFVCVTSACSNLSS-PSLGKQVHALAIKSDVPYNRVSVNNALVAMYS 393

Query: 75  KFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAG 134
           K      A ++FD MP  +T+S NS+I  + Q+G  V SL +F  M        +     
Sbjct: 394 KCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQHGVEVESLRLFELMLEKDIAPNSITFIA 453

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           ++S C   G++E G++   ++      E      + ++DL  +      A R+ E M   
Sbjct: 454 VLSACVHTGKVEEGQKYFNMMKERFCIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFN 513

Query: 195 -NEVSWTAMISGCIDSQNYDTGI 216
              + W  ++  C    N +  +
Sbjct: 514 PGSIEWATLLGACRKHGNVELAV 536



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 32/150 (21%)

Query: 335 TLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSI----TSSH-- 388
           T   +L +C  Q  L  G  +H    K+ +     + N    +YSKCGS+    TS H  
Sbjct: 11  TFRNLLKACIAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFHLT 70

Query: 389 -------------------------QIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
                                    ++F+E+   D VS+ TLI+ Y   G     L+LF 
Sbjct: 71  QYPNVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFE 130

Query: 424 EMQESGVEPDAITVLAILSAC-NHAGLVKE 452
           E++E  +  D  T+  +++AC +  GLV++
Sbjct: 131 EVRELRLGLDGFTLSGVITACGDDVGLVRQ 160


>gi|413918573|gb|AFW58505.1| hypothetical protein ZEAMMB73_474993 [Zea mays]
          Length = 773

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 185/556 (33%), Positives = 309/556 (55%), Gaps = 8/556 (1%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           N+  + S ++AC       + G  LH   +K G    P++ ++L SMY+K    E A  L
Sbjct: 219 NSRTMESGLEACGVLD-ELNSGRCLHGYVVKVGIGDSPMVISALFSMYSKCYSTEDACAL 277

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL 145
           F E+P +D +SW S+I  + + G    ++E+F++M   G      L++ ++S     G +
Sbjct: 278 FLELPEKDVVSWTSLIGIYCRRGLITEAMELFQQMMESGLQPDEILVSCVLSGLGNNGNV 337

Query: 146 ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISG 205
             G+  HA VI   +F  SV +  AL+ +Y K      A RVF  +  R+  SW  M+ G
Sbjct: 338 HGGKTFHA-VITKRNFGDSVLIGNALISMYGKFEMVDSAGRVFRLLHQRDADSWNLMVVG 396

Query: 206 CIDSQNYDTGIDLFRAMQ-REGVKPTRVTLTIV--LLACAELRDLRNGKAIHGYAYCCGF 262
              +      ++L+R MQ R+  +   V  ++V  + +C+ L +LR G++ H Y+     
Sbjct: 397 YCKAGCDVKCLELYREMQLRDKYEFWCVADSLVSAISSCSRLAELRLGRSAHCYSIKHLL 456

Query: 263 DFDHHLSAALMHMYCECTEALHPARIIFERTKVK-DVVIWSSIIRGYSQSGDLSEAMKLF 321
           D D  ++  L+ MY  C +  H  +I F   K+K DVV W+++I  Y+  G  + AM L+
Sbjct: 457 DEDSSVANVLIGMYGRCGKFDHACKI-FGLAKLKGDVVTWNTLISSYAHLGHSNAAMSLY 515

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
            +M +E + PNS TL+ ++S+C     L  G  +H Y+ + G ++DVSI  AL++MY+KC
Sbjct: 516 DQMLIEGLTPNSTTLITVISACANLVALERGEKIHSYVKEMGWDYDVSINTALIDMYAKC 575

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
           G +  + +IF+ M   D V+W  +ISGYG HG  ++AL+LF +M+   ++P+ +T LAIL
Sbjct: 576 GQLGIARRIFDSMLQHDVVAWNVMISGYGMHGEAKQALELFGKMEGGSIKPNGVTFLAIL 635

Query: 442 SACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPS 501
           SA  H+GL++E   +F   M +  +   ++HYAC VDLLGKSG +++A  +V  MP++P 
Sbjct: 636 SALCHSGLLEEGRKVFTR-MGKYSLEPNLKHYACMVDLLGKSGHLQEAEDMVLAMPIEPD 694

Query: 502 TRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRV 561
             I  +L+SAC++H   E+   +A +   ++PEN   Y L+S     +  W   E++   
Sbjct: 695 GGIWGTLLSACKLHDNFEMGLRIAKKAFASDPENEGYYILISNSYGGAKKWDEIEKLRET 754

Query: 562 MRAKGLSKSYGFSRIE 577
           M+  G+ K  G+S ++
Sbjct: 755 MKNLGVQKGVGWSAVD 770



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 141/518 (27%), Positives = 242/518 (46%), Gaps = 27/518 (5%)

Query: 48  LQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQN 107
           L++H  A+ SG    P ++  L+S Y+   +P  A   F   P  D   WNS+I      
Sbjct: 30  LRVHALAVTSGLYQRPDLAAKLVSAYSSAGRPGLAALAFSASPRPDAFLWNSLIRTHHCA 89

Query: 108 GFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHA------LVIVDGSF 161
             +V +L   R M   G            S  +++G L +G  +HA      L++ DG  
Sbjct: 90  SDFVAALSAHRRMLASGARPSPFTAPLAASASAELGALGVGAAVHAYCVRYGLLVGDGD- 148

Query: 162 ELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTG----ID 217
             SV V+++L+ +Y++C +   A++VFE+M  R+ V+WTA+ISGC+ +     G    ++
Sbjct: 149 --SVAVASSLVYMYARCGNVRDAVKVFEEMPERDVVAWTAVISGCVRNGESGEGLRYLVE 206

Query: 218 LFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYC 277
           + R      V+P   T+   L AC  L +L +G+ +HGY    G      + +AL  MY 
Sbjct: 207 MVRLAGDGSVRPNSRTMESGLEACGVLDELNSGRCLHGYVVKVGIGDSPMVISALFSMYS 266

Query: 278 ECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLL 337
           +C  +   A  +F     KDVV W+S+I  Y + G ++EAM+LF +M    ++P+ + + 
Sbjct: 267 KCY-STEDACALFLELPEKDVVSWTSLIGIYCRRGLITEAMELFQQMMESGLQPDEILVS 325

Query: 338 AILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR 397
            +LS       +  G   H  I K      V IGNAL++MY K   + S+ ++F  +  R
Sbjct: 326 CVLSGLGNNGNVHGGKTFHAVITKRNFGDSVLIGNALISMYGKFEMVDSAGRVFRLLHQR 385

Query: 398 DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP---DAITVLAILSACNHAGLVKEAE 454
           D  SW  ++ GY   G   + L+L+ EMQ          A ++++ +S+C+    ++   
Sbjct: 386 DADSWNLMVVGYCKAGCDVKCLELYREMQLRDKYEFWCVADSLVSAISSCSRLAELRLGR 445

Query: 455 TL----FNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVS 510
           +       +++ E      +      + + G+ GK + ACK+     +K      ++L+S
Sbjct: 446 SAHCYSIKHLLDEDSSVANV-----LIGMYGRCGKFDHACKIFGLAKLKGDVVTWNTLIS 500

Query: 511 ACRIHGRLEVAEMLAHQ-LIEAEPENAANYTLLSMVCS 547
           +    G    A  L  Q LIE    N+     +   C+
Sbjct: 501 SYAHLGHSNAAMSLYDQMLIEGLTPNSTTLITVISACA 538



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 136/514 (26%), Positives = 249/514 (48%), Gaps = 18/514 (3%)

Query: 47  GLQLHCTALKSG---SDADPV-ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIIN 102
           G  +H   ++ G    D D V +++SL+ MYA+      A ++F+EMP RD ++W ++I+
Sbjct: 130 GAAVHAYCVRYGLLVGDGDSVAVASSLVYMYARCGNVRDAVKVFEEMPERDVVAWTAVIS 189

Query: 103 CFTQNGFYVRSLEMFREMY-LCG---FVLKAELLAGIISLCSQIGELELGRQIHALVIVD 158
              +NG     L    EM  L G       +  +   +  C  + EL  GR +H  V+  
Sbjct: 190 GCVRNGESGEGLRYLVEMVRLAGDGSVRPNSRTMESGLEACGVLDELNSGRCLHGYVVKV 249

Query: 159 GSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDL 218
           G  + S  V +AL  +YSKC+    A  +F ++  ++ VSWT++I            ++L
Sbjct: 250 GIGD-SPMVISALFSMYSKCYSTEDACALFLELPEKDVVSWTSLIGIYCRRGLITEAMEL 308

Query: 219 FRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCE 278
           F+ M   G++P  + ++ VL       ++  GK  H       F     +  AL+ MY +
Sbjct: 309 FQQMMESGLQPDEILVSCVLSGLGNNGNVHGGKTFHAVITKRNFGDSVLIGNALISMYGK 368

Query: 279 CTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRL-ERIEPNSV--T 335
             E +  A  +F     +D   W+ ++ GY ++G   + ++L+  M+L ++ E   V  +
Sbjct: 369 -FEMVDSAGRVFRLLHQRDADSWNLMVVGYCKAGCDVKCLELYREMQLRDKYEFWCVADS 427

Query: 336 LLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA 395
           L++ +SSC+R + L  G   HCY +K  L+ D S+ N L+ MY +CG    + +IF    
Sbjct: 428 LVSAISSCSRLAELRLGRSAHCYSIKHLLDEDSSVANVLIGMYGRCGKFDHACKIFGLAK 487

Query: 396 AR-DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAE 454
            + D V+W TLIS Y   G+   A+ L+ +M   G+ P++ T++ ++SAC +   ++  E
Sbjct: 488 LKGDVVTWNTLISSYAHLGHSNAAMSLYDQMLIEGLTPNSTTLITVISACANLVALERGE 547

Query: 455 TLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRI 514
            + + V KE      +      +D+  K G++  A ++  +M ++      + ++S   +
Sbjct: 548 KIHSYV-KEMGWDYDVSINTALIDMYAKCGQLGIARRIFDSM-LQHDVVAWNVMISGYGM 605

Query: 515 HGRLEVAEMLAHQLIEA--EPENAANYTLLSMVC 546
           HG  + A  L  ++     +P       +LS +C
Sbjct: 606 HGEAKQALELFGKMEGGSIKPNGVTFLAILSALC 639



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 104/356 (29%), Positives = 175/356 (49%), Gaps = 12/356 (3%)

Query: 145 LELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMIS 204
           LEL R +HAL +  G ++     +  L+  YS      +A   F      +   W ++I 
Sbjct: 27  LELLR-VHALAVTSGLYQRPDLAAK-LVSAYSSAGRPGLAALAFSASPRPDAFLWNSLIR 84

Query: 205 GCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGF-- 262
               + ++   +   R M   G +P+  T  +   A AEL  L  G A+H Y    G   
Sbjct: 85  THHCASDFVAALSAHRRMLASGARPSPFTAPLAASASAELGALGVGAAVHAYCVRYGLLV 144

Query: 263 -DFDH-HLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
            D D   ++++L++MY  C   +  A  +FE    +DVV W+++I G  ++G+  E ++ 
Sbjct: 145 GDGDSVAVASSLVYMYARCGN-VRDAVKVFEEMPERDVVAWTAVISGCVRNGESGEGLRY 203

Query: 321 FSRM-RLE---RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
              M RL     + PNS T+ + L +C     L+ G  +H Y++K G+     + +AL +
Sbjct: 204 LVEMVRLAGDGSVRPNSRTMESGLEACGVLDELNSGRCLHGYVVKVGIGDSPMVISALFS 263

Query: 377 MYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAIT 436
           MYSKC S   +  +F E+  +D VSWT+LI  Y   G   EA++LF +M ESG++PD I 
Sbjct: 264 MYSKCYSTEDACALFLELPEKDVVSWTSLIGIYCRRGLITEAMELFQQMMESGLQPDEIL 323

Query: 437 VLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKV 492
           V  +LS   + G V   +T F+ V+ ++    ++      + + GK   ++ A +V
Sbjct: 324 VSCVLSGLGNNGNVHGGKT-FHAVITKRNFGDSVLIGNALISMYGKFEMVDSAGRV 378


>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 939

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 185/568 (32%), Positives = 310/568 (54%), Gaps = 6/568 (1%)

Query: 11  LHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLI 70
           L L+K E+   G+  + +I  SV ++CA   +    G QLH  ALK    +D  +  + +
Sbjct: 262 LELFK-EMQKVGIGVSQSIYASVFRSCA-GLSALKVGTQLHAHALKCDFGSDITVGTATL 319

Query: 71  SMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE 130
            MYAK      A ++F+ +P      +N+II    +N     +L+ F+ +   G      
Sbjct: 320 DMYAKCGSLADAQRIFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEI 379

Query: 131 LLAGIISLCSQI-GELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
            L+G  S C+ I G+L+ GRQ+H+L  V  +   ++ V+ ++LD+Y KC     A  +F+
Sbjct: 380 SLSGAFSACASIKGDLD-GRQLHSLS-VKSTLRSNICVANSILDMYGKCEALSEACCMFD 437

Query: 190 QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
           +M  R+ VSW A+I+    + N +  ++LF +M R  ++P + T   VL AC+  + L +
Sbjct: 438 EMERRDAVSWNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNS 497

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
           G  IH      G   D  +  AL+ MYC+C   +  A+ I +R + + +V W++II G++
Sbjct: 498 GMEIHNRIIKSGLGLDSFVGGALIDMYCKCG-MIEEAKKIHDRIEQQTMVSWNAIIAGFT 556

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
                 +A   F  M    ++P++ T   +L +C   + +  G  +H  I+K  L+ DV 
Sbjct: 557 LLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLASVGLGKQIHGQIIKLELHSDVY 616

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
           I + L++MYSKCG++  S  +F +   +DFV+W  +I GY  HG GEEAL  F  MQ   
Sbjct: 617 ITSTLVDMYSKCGNMQDSALVFEKAPNKDFVTWNAMICGYAQHGLGEEALGYFERMQLEN 676

Query: 430 VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
           V P+  T ++IL AC H G + +    FN ++ E  +   IEHY+C +D++G+SG+I +A
Sbjct: 677 VRPNHATFVSILRACAHMGFIDKGLHYFNAMLTEYGLEPQIEHYSCMIDIIGRSGRISEA 736

Query: 490 CKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSES 549
            K++  MP +    I  +L+S C+IHG +E+AE   + +++ EPE+++   LLS + +++
Sbjct: 737 LKLIQEMPFEADAVIWRTLLSICKIHGNIEIAEKATNAILQLEPEDSSACILLSNIYADA 796

Query: 550 GNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           G W    E+ ++MR   L K  G S IE
Sbjct: 797 GMWGKVSEMRKMMRYNKLKKEPGCSWIE 824



 Score =  232 bits (592), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 132/469 (28%), Positives = 249/469 (53%), Gaps = 8/469 (1%)

Query: 33  VIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYR 92
           V+KAC+  +     G+Q+H   ++ G   D V  ++L+ MYAK  + + + ++F E+P +
Sbjct: 182 VLKACSVLEDGG-LGIQVHGLIVRMGFYKDVVTGSALLDMYAKCKRLDDSLKIFSEIPVK 240

Query: 93  DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIH 152
           + + W++II    QN  ++  LE+F+EM   G  +   + A +   C+ +  L++G Q+H
Sbjct: 241 NWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVFRSCAGLSALKVGTQLH 300

Query: 153 ALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNY 212
           A  +    F   + V TA LD+Y+KC     A R+F  +   +   + A+I GC+ ++  
Sbjct: 301 AHAL-KCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSLQCYNAIIVGCVRNEKG 359

Query: 213 DTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAAL 272
              +  F+ + + G+    ++L+    ACA ++   +G+ +H  +       +  ++ ++
Sbjct: 360 FEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQLHSLSVKSTLRSNICVANSI 419

Query: 273 MHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPN 332
           + MY +C EAL  A  +F+  + +D V W+++I  + Q+G+  E + LF+ M   R+EP+
Sbjct: 420 LDMYGKC-EALSEACCMFDEMERRDAVSWNAVIAAHEQNGNEEETLNLFASMLRLRMEPD 478

Query: 333 SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFN 392
             T  ++L +C+ Q  L+ G+ +H  I+K+GL  D  +G AL++MY KCG I  + +I +
Sbjct: 479 QFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKIHD 538

Query: 393 EMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKE 452
            +  +  VSW  +I+G+    + E+A   F EM +  V+PD  T   +L AC +   V  
Sbjct: 539 RIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLASVGL 598

Query: 453 AETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDACKVVSTMPMK 499
            + +   ++   K+ L  + Y  +  VD+  K G ++D+  V    P K
Sbjct: 599 GKQIHGQII---KLELHSDVYITSTLVDMYSKCGNMQDSALVFEKAPNK 644



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 147/533 (27%), Positives = 261/533 (48%), Gaps = 48/533 (9%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPS-------VIKACAYAQTHQHFGLQLHCT 53
           + S+  Y +TL ++      S L  N   LP+       +I+ C+   + +  G Q H  
Sbjct: 11  IASRILYNKTLRIFTF-CTISTLQQNQTKLPTKIRTFSHIIQECSDYNSLKP-GKQAHAR 68

Query: 54  ALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEM------------------------ 89
            + SG   D  ISN L+ MY + S    AY++F++M                        
Sbjct: 69  MIVSGFIPDVYISNCLMKMYLRCSHLNYAYKVFEKMSQRDVISYNTMISGYADAGEMNLA 128

Query: 90  -------PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV-LKAELLAGIISLCSQ 141
                  P RD +SWNS+++ F QNG   +S+++F +M     V       A ++  CS 
Sbjct: 129 NEFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVFLDMGRSEEVGFDQTTFAVVLKACSV 188

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
           + +  LG Q+H L++  G F   V   +ALLD+Y+KC     +L++F ++ ++N V W+A
Sbjct: 189 LEDGGLGIQVHGLIVRMG-FYKDVVTGSALLDMYAKCKRLDDSLKIFSEIPVKNWVCWSA 247

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           +I+GC+ +  +  G++LF+ MQ+ G+  ++     V  +CA L  L+ G  +H +A  C 
Sbjct: 248 IIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVFRSCAGLSALKVGTQLHAHALKCD 307

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
           F  D  +  A + MY +C  +L  A+ IF       +  +++II G  ++    EA++ F
Sbjct: 308 FGSDITVGTATLDMYAKCG-SLADAQRIFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFF 366

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
             +    +  N ++L    S+C        G  +H   +K+ L  ++ + N++++MY KC
Sbjct: 367 QLLLKSGLGFNEISLSGAFSACASIKGDLDGRQLHSLSVKSTLRSNICVANSILDMYGKC 426

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
            +++ +  +F+EM  RD VSW  +I+ +  +G  EE L LF  M    +EPD  T  ++L
Sbjct: 427 EALSEACCMFDEMERRDAVSWNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVL 486

Query: 442 SACNHAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDACKV 492
            AC+    +     + N ++K     L ++ +     +D+  K G IE+A K+
Sbjct: 487 KACSSQQALNSGMEIHNRIIKS---GLGLDSFVGGALIDMYCKCGMIEEAKKI 536


>gi|357130409|ref|XP_003566841.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 815

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 180/575 (31%), Positives = 308/575 (53%), Gaps = 4/575 (0%)

Query: 3   SKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDAD 62
           ++H   + + +  ++L  SG   +   LP+V+K C      + +G  +H + +K G + D
Sbjct: 228 ARHGDYRRVMIIIEKLVASGDEISKYTLPTVLKCCMELGLAK-YGQSVHASVIKRGLETD 286

Query: 63  PVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL 122
            V+++ L+ MY++    E AY++F  +   D +  +++I+CF ++     +L++F +M  
Sbjct: 287 NVLNSCLVEMYSRCLSAEEAYEVFIRIDEPDVVHCSAMISCFDRHDMAWEALDLFVKMSG 346

Query: 123 CGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL 182
            G      +  GI  + S+ G+  L R +HA ++  G F +   V  A+L++Y K     
Sbjct: 347 MGVKPNHYIFVGIAGVASRTGDANLCRSVHAYIVKSG-FAMLKGVGDAILNMYVKVGAVQ 405

Query: 183 IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
            A   F+ +   +  SW  ++S      N + G+ +F+ M  EG    + T   VL  C 
Sbjct: 406 DATVTFDLIHEPDTFSWNTILSAFYSGSNCEQGLRIFKQMACEGFSANKYTYVSVLRCCT 465

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
            L +LR G  +H      G   D  +S  L+ MY + +     A ++FE+ K +D   W+
Sbjct: 466 SLMNLRFGTQVHACILKSGLQNDTDVSRMLVDMYAQ-SGCFTSACLVFEQLKERDAFSWT 524

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
            I+ GY+++ +  + ++ F  M  E I P+  TL   LS C+  + L  GL +H + +K+
Sbjct: 525 VIMSGYAKTEEAEKVVEYFRSMLRENIRPSDATLAVSLSVCSDMASLGSGLQLHSWAIKS 584

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
           G N  V +  AL++MY KCG+I  +  +F+E   RD V+W T+I GY  HG+G +AL  F
Sbjct: 585 GWNSSV-VSGALVDMYVKCGNIADAEMLFHESETRDQVAWNTIICGYSQHGHGYKALDAF 643

Query: 423 LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGK 482
            +M + G  PD IT + +LSAC+HAGL+ E    F ++     I   +EHYAC VD+L K
Sbjct: 644 KQMVDEGKRPDGITFVGVLSACSHAGLLNEGRKYFKSLSSIYGITPTMEHYACMVDILSK 703

Query: 483 SGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLL 542
           +G++ +A  +++ MP+ P + I  +++ ACRIH  +E+AE  A +L E EP +A++  LL
Sbjct: 704 AGRLVEAESLINQMPLAPDSSIWRTILGACRIHRNIEIAERAAERLFELEPHDASSSILL 763

Query: 543 SMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           S + ++ G W     V  ++   G+ K  G S IE
Sbjct: 764 SNIYADLGRWSDVTRVRNILLDHGVKKEPGCSWIE 798



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 122/466 (26%), Positives = 221/466 (47%), Gaps = 14/466 (3%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPY 91
           + ++ CA  +T +  G +LH   L+S    D  + +SL++MY K  +   A ++FD MP+
Sbjct: 55  AALQDCAVRRTLRR-GQELHARLLRSALHPDTFLLDSLLNMYCKCGRLVDARRVFDGMPH 113

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQI 151
           RD ++W ++I+  T  G   ++L+MF  M   G       LA ++  CS     +   Q+
Sbjct: 114 RDIVAWTAMISAHTAAGDSDQALDMFARMNQEGIAPNGFTLASVLKACSGGSHSKFTHQV 173

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQN 211
           H  V+     +   +V ++L++ Y+ C     A  V   +  R++VSW A+++G     +
Sbjct: 174 HGQVVKLNGLD-DPYVGSSLVEAYTSCGELDAAETVLLGLPERSDVSWNALLNGYARHGD 232

Query: 212 YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAA 271
           Y   + +   +   G + ++ TL  VL  C EL   + G+++H      G + D+ L++ 
Sbjct: 233 YRRVMIIIEKLVASGDEISKYTLPTVLKCCMELGLAKYGQSVHASVIKRGLETDNVLNSC 292

Query: 272 LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP 331
           L+ MY  C  A   A  +F R    DVV  S++I  + +     EA+ LF +M    ++P
Sbjct: 293 LVEMYSRCLSA-EEAYEVFIRIDEPDVVHCSAMISCFDRHDMAWEALDLFVKMSGMGVKP 351

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIF 391
           N    + I    +R    +    VH YI+K+G      +G+A++NMY K G++  +   F
Sbjct: 352 NHYIFVGIAGVASRTGDANLCRSVHAYIVKSGFAMLKGVGDAILNMYVKVGAVQDATVTF 411

Query: 392 NEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN-----H 446
           + +   D  SW T++S +      E+ L++F +M   G   +  T +++L  C       
Sbjct: 412 DLIHEPDTFSWNTILSAFYSGSNCEQGLRIFKQMACEGFSANKYTYVSVLRCCTSLMNLR 471

Query: 447 AGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKV 492
            G    A  L + +  +  ++  +      VD+  +SG    AC V
Sbjct: 472 FGTQVHACILKSGLQNDTDVSRML------VDMYAQSGCFTSACLV 511



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 119/458 (25%), Positives = 207/458 (45%), Gaps = 25/458 (5%)

Query: 130 ELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
            L A  +  C+    L  G+++HA ++   +     F+  +LL++Y KC   + A RVF+
Sbjct: 51  RLHAAALQDCAVRRTLRRGQELHARLL-RSALHPDTFLLDSLLNMYCKCGRLVDARRVFD 109

Query: 190 QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
            M  R+ V+WTAMIS    + + D  +D+F  M +EG+ P   TL  VL AC+     + 
Sbjct: 110 GMPHRDIVAWTAMISAHTAAGDSDQALDMFARMNQEGIAPNGFTLASVLKACSGGSHSKF 169

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
              +HG         D ++ ++L+  Y  C E L  A  +      +  V W++++ GY+
Sbjct: 170 THQVHGQVVKLNGLDDPYVGSSLVEAYTSCGE-LDAAETVLLGLPERSDVSWNALLNGYA 228

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
           + GD    M +  ++     E +  TL  +L  C       +G  VH  ++K GL  D  
Sbjct: 229 RHGDYRRVMIIIEKLVASGDEISKYTLPTVLKCCMELGLAKYGQSVHASVIKRGLETDNV 288

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
           + + L+ MYS+C S   ++++F  +   D V  + +IS +  H    EAL LF++M   G
Sbjct: 289 LNSCLVEMYSRCLSAEEAYEVFIRIDEPDVVHCSAMISCFDRHDMAWEALDLFVKMSGMG 348

Query: 430 VEPDAITVLAILSACNHAGLVKEAETLFNNVMKE-----KKIALAIEHYACYVDLLGKSG 484
           V+P+    + I    +  G      ++   ++K      K +  AI      +++  K G
Sbjct: 349 VKPNHYIFVGIAGVASRTGDANLCRSVHAYIVKSGFAMLKGVGDAI------LNMYVKVG 402

Query: 485 KIEDACKVVSTMPMKPST----RILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYT 540
            ++DA  V   +  +P T     ILS+  S       L + + +A      E  +A  YT
Sbjct: 403 AVQDA-TVTFDLIHEPDTFSWNTILSAFYSGSNCEQGLRIFKQMA-----CEGFSANKYT 456

Query: 541 LLSMV--CSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
            +S++  C+   N     +V   +   GL      SR+
Sbjct: 457 YVSVLRCCTSLMNLRFGTQVHACILKSGLQNDTDVSRM 494


>gi|225464746|ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic [Vitis vinifera]
          Length = 825

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 192/557 (34%), Positives = 316/557 (56%), Gaps = 16/557 (2%)

Query: 29  ILPSVIKACAYAQTHQHFGLQLHCTALKSGSD--ADPVISNSLISMYAKFSKPESAYQLF 86
           + P+V +   Y   +  +GL      +K GSD   D  + +S I MYA+    + A ++F
Sbjct: 224 VFPAVWRMSDYDNANVLYGL-----VVKLGSDFVDDFFVVSSAIFMYAELGCVDFAREIF 278

Query: 87  DEMPYRDTISWNSIINCFTQNGFYVRSLEMFRE-MYLCGFVLKAELLAGIISLCSQIGEL 145
           D    R+T  WN++I  + QN   + ++++F + M    FVL        ++  SQ+  L
Sbjct: 279 DCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWL 338

Query: 146 ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISG 205
           ELGRQ+HA ++   +  L V +  A++ +YS+C     + +VF  M+ R+ V+W  M+S 
Sbjct: 339 ELGRQLHAYILKSSTI-LQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSA 397

Query: 206 CIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFD 265
            + +   D G+ L  AMQ++G     VTLT +L   + LR    GK  H Y    G  F+
Sbjct: 398 FVQNGLDDEGLMLVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFE 457

Query: 266 HHLSAALMHMYCECTEALHPARIIFERTKV--KDVVIWSSIIRGYSQSGDLSEAMKLFSR 323
             + + L+ MY + +  +  A+ +FE+     +D   W+++I GY+Q+G   E   +F +
Sbjct: 458 G-MDSYLIDMYAK-SGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQNGLSEEGFAVFRK 515

Query: 324 MRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS 383
           M  + + PN+VTL +IL +C     +  G  +H + ++  LN +V +G AL++MYSK G+
Sbjct: 516 MIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLNRNVFVGTALLDMYSKSGA 575

Query: 384 ITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
           IT +  +F E   ++ V++TT+IS YG HG GE AL LF  M  SG++PD++T +AILSA
Sbjct: 576 ITYAENVFAETLEKNSVTYTTMISSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSA 635

Query: 444 CNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPST- 502
           C++AGLV E   +F ++ +E KI  + EHY C  D+LG+ G++ +A + V  +  + +T 
Sbjct: 636 CSYAGLVDEGLRIFQSMEREYKIQPSAEHYCCVADMLGRVGRVVEAYEFVKGLGEEGNTF 695

Query: 503 RILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAAN--YTLLSMVCSESGNWLGAEEVWR 560
            I  SL+ ACRIHG  E+ +++A++L+E E  ++    + LLS + +  GNW   + V +
Sbjct: 696 GIWGSLLGACRIHGEFELGKVVANKLLEMEKGSSLTGYHVLLSNIYAAEGNWDNVDRVRK 755

Query: 561 VMRAKGLSKSYGFSRIE 577
            MR KGL K  G S +E
Sbjct: 756 EMRQKGLMKEAGCSWVE 772



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 121/394 (30%), Positives = 199/394 (50%), Gaps = 23/394 (5%)

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC-GFV 126
           S +S   +   P  A  LFD +P   T+ WN+II  F  N   + +L  +  M       
Sbjct: 42  SRLSHLCRQGHPHQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPK 101

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKC-------- 178
             +   +  +  C+Q   L+LG+ +H  V+    F  S  V  +LL++YS C        
Sbjct: 102 FDSYTFSSTLKACAQARSLKLGKALHCHVL-RSHFGSSRIVYNSLLNMYSTCLTEVPYLG 160

Query: 179 -----HHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVT 233
                ++  +  RVF+ M  RN V+W  MIS  + ++       +FR M R G++PT V+
Sbjct: 161 TAYDFNNCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVS 220

Query: 234 LTIVLLACAELRDLRNGKAIHGYAYCCGFDF--DHHLSAALMHMYCE--CTEALHPARII 289
              V  A   + D  N   ++G     G DF  D  + ++ + MY E  C +    AR I
Sbjct: 221 FVNVFPAVWRMSDYDNANVLYGLVVKLGSDFVDDFFVVSSAIFMYAELGCVDF---AREI 277

Query: 290 FERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSR-MRLERIEPNSVTLLAILSSCTRQSF 348
           F+    ++  +W+++I GY Q+    EA+ LF + M  E+   + VT L+ L++ ++  +
Sbjct: 278 FDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQW 337

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
           L  G  +H YI+K+     V I NA++ MYS+CGSI +S ++F+ M  RD V+W T++S 
Sbjct: 338 LELGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSA 397

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILS 442
           +  +G  +E L L   MQ+ G   D++T+ A+LS
Sbjct: 398 FVQNGLDDEGLMLVFAMQKQGFMVDSVTLTALLS 431



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 141/541 (26%), Positives = 260/541 (48%), Gaps = 31/541 (5%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYA-------------KFSK 78
           S +KACA A++ +  G  LHC  L+S   +  ++ NSL++MY+              F+ 
Sbjct: 109 STLKACAQARSLK-LGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNN 167

Query: 79  PESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISL 138
            +   ++FD M  R+ ++WN++I+ + +    + + +MFR M   G          +   
Sbjct: 168 CDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPA 227

Query: 139 CSQIGELELGRQIHALVIVDGS-FELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197
             ++ + +    ++ LV+  GS F    FV ++ + +Y++      A  +F+  + RN  
Sbjct: 228 VWRMSDYDNANVLYGLVVKLGSDFVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTE 287

Query: 198 SWTAMISGCIDSQNYDTGIDLF-RAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
            W  MI G + +      IDLF + M+ E      VT    L A ++L+ L  G+ +H Y
Sbjct: 288 VWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGRQLHAY 347

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
                      +  A++ MY  C  ++  +  +F     +DVV W++++  + Q+G   E
Sbjct: 348 ILKSSTILQVVILNAIIVMYSRCG-SIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDE 406

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
            + L   M+ +    +SVTL A+LS  +       G   H Y+++ G+ F+  + + L++
Sbjct: 407 GLMLVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFE-GMDSYLID 465

Query: 377 MYSKCGSITSSHQIF--NEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           MY+K G IT++ Q+F  N    RD  +W  +I+GY  +G  EE   +F +M E  V P+A
Sbjct: 466 MYAKSGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNA 525

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLLGKSGKIEDACK 491
           +T+ +IL ACN  G +   + +    ++    + + +        +D+  KSG I  A  
Sbjct: 526 VTLASILPACNPMGTIGLGKQIHGFAIRCFLNRNVFVG----TALLDMYSKSGAITYAEN 581

Query: 492 VVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLSMVCSES 549
           V +    K S    ++++S+   HG  E A  L H ++ +  +P++     +LS  CS +
Sbjct: 582 VFAETLEKNSV-TYTTMISSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILS-ACSYA 639

Query: 550 G 550
           G
Sbjct: 640 G 640


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 179/560 (31%), Positives = 296/560 (52%), Gaps = 32/560 (5%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G+  +     S ++ C  A   +  G Q+H   +  G   D  + N+LI MYAK    ES
Sbjct: 170 GVCPDNFTFASALRVCG-ALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEES 228

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC--GFVLKAELLAGIISLC 139
             ++FDEM  R+ ++WNSII+   Q G +  +L +F  M     G          +++LC
Sbjct: 229 CLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLC 288

Query: 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSW 199
           +       GRQIHA +I   +   ++ V T L+ +YS+C     A  +F +M  RN  SW
Sbjct: 289 ANQRNDNQGRQIHAHLI-RANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSW 347

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
            +MI G   +      + LF+ MQ  G+KP   +L+ +L +C  L D + G+ +H +   
Sbjct: 348 NSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVR 407

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKD--VVIWSSIIRGYSQSGDLSEA 317
              + +  L   L+ MY +C  ++  A  ++++T  KD    +W+SI+ GY+  G   E+
Sbjct: 408 NTMEEEGILQVVLVDMYAKCG-SMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKES 466

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
              F  M    IE + +T++ I++    ++                         AL++M
Sbjct: 467 FNHFLEMLESDIEYDVLTMVTIVNLLVLET-------------------------ALVDM 501

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           YSKCG+IT +  +F+ M  ++ VSW  +ISGY  HG  +EAL L+ EM + G+ P+ +T 
Sbjct: 502 YSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTF 561

Query: 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
           LAILSAC+H GLV+E   +F ++ ++  I    EHY C VDLLG++G++EDA + V  MP
Sbjct: 562 LAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMP 621

Query: 498 MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEE 557
           ++P      +L+ ACR+H  +++  + A +L E +P+N   Y ++S + + +G W   E+
Sbjct: 622 IEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVED 681

Query: 558 VWRVMRAKGLSKSYGFSRIE 577
           + ++M+ KG+ K  G S IE
Sbjct: 682 IRQMMKMKGVKKDPGVSWIE 701



 Score =  228 bits (581), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 158/575 (27%), Positives = 290/575 (50%), Gaps = 38/575 (6%)

Query: 25  SNTAILP--SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES- 81
           S+   LP  S+I+ C  + + Q  G  +H   + +G + D  +   ++ +YA+    +  
Sbjct: 67  SDVNPLPYSSLIQDCIDSNSFQR-GKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDL 125

Query: 82  --AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLC 139
             A +LF+EMP R+  +WN++I  + +   Y+ +  +F  M   G        A  + +C
Sbjct: 126 CYARKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVC 185

Query: 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSW 199
             +   + G+Q+H+ +I  G F+   FV  AL+D+Y+KC      L+VF++M  RN+V+W
Sbjct: 186 GALRSRDGGKQVHSKLIACG-FKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTW 244

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQ--REGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
            ++IS      +++  + LF  MQ   +G++P + T T +L  CA  R+   G+ IH + 
Sbjct: 245 NSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHL 304

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
                  +  +   L+HMY EC   L+ A+ IF R   ++   W+S+I GY Q+G+  EA
Sbjct: 305 IRANITKNIIVETELVHMYSECGR-LNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEA 363

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
           ++LF +M+L  I+P+  +L ++LSSC   S    G  +H +I++  +  +  +   L++M
Sbjct: 364 LRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDM 423

Query: 378 YSKCGSITSSHQIFNEMAARDFVS--WTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           Y+KCGS+  + +++++   +D  +  W ++++GY   G  +E+   FLEM ES +E D +
Sbjct: 424 YAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVL 483

Query: 436 TVLAILSAC----------NHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
           T++ I++            +  G + +A T+F+N M  K I      +   +    K G 
Sbjct: 484 TMVTIVNLLVLETALVDMYSKCGAITKARTVFDN-MNGKNIV----SWNAMISGYSKHGC 538

Query: 486 IEDACKVVSTMPMK---PSTRILSSLVSACRIHGRLE-----VAEMLAHQLIEAEPENAA 537
            ++A  +   MP K   P+     +++SAC   G +E        M     IEA+ E   
Sbjct: 539 SKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAE--- 595

Query: 538 NYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYG 572
           +YT +  +   +G    A+E    M  +    ++G
Sbjct: 596 HYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWG 630


>gi|218188593|gb|EEC71020.1| hypothetical protein OsI_02714 [Oryza sativa Indica Group]
          Length = 825

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 177/548 (32%), Positives = 297/548 (54%), Gaps = 4/548 (0%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEM 89
           LP+V+K C      +  G  +H   +K G + D V++N LI MY+K    E AY++F  +
Sbjct: 265 LPTVLKCCMELGLAKS-GQAVHGLVIKRGLETDRVLNNCLIEMYSKCLSAEDAYEVFARI 323

Query: 90  PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGR 149
              D +  + +I+CF ++     + ++F +M   G         G+  + S+ G++ L R
Sbjct: 324 DEPDVVHCSLMISCFDRHDMAPEAFDIFMQMSDMGVKPNQYTFVGLAIVASRTGDVNLCR 383

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
            IHA ++  G F  +  V  A++ +Y K      A+  F+ M   +  SW  ++SG    
Sbjct: 384 SIHAHIVKSG-FSRTKGVCDAIVGMYVKTGAVQDAILAFDLMQGPDIASWNTLLSGFYSG 442

Query: 210 QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS 269
            N + G+ +F+ +  EGV   + T   +L  C  L DLR G  +H      GF  D+ +S
Sbjct: 443 NNCEHGLRIFKELICEGVLANKYTYVGILRCCTSLMDLRFGCQVHACVLKSGFQGDYDVS 502

Query: 270 AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
             L+ MY +       AR++F+R K +DV  W+ ++  Y+++ +  +A++ F  M  E  
Sbjct: 503 KMLLDMYVQ-AGCFTNARLVFDRLKERDVFSWTVVMSTYAKTDEGEKAIECFRSMLRENK 561

Query: 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
            PN  TL   LS C+  + L  GL +H Y +K+G N  V + +AL++MY KCG++  +  
Sbjct: 562 RPNDATLATSLSVCSDLACLGSGLQLHSYTIKSGWNSSV-VSSALVDMYVKCGNLADAEM 620

Query: 390 IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL 449
           +F+E    D V W T+I GY  HG+G +AL+ F EM + G  PD IT + +LSAC+HAGL
Sbjct: 621 LFDESDTHDLVEWNTIICGYAQHGHGYKALEAFQEMIDEGNVPDEITFVGVLSACSHAGL 680

Query: 450 VKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLV 509
           + E    F  +     I   +EHYAC VD+L K+GK+ +A  +++ MP+ P   +  +++
Sbjct: 681 LDEGRRYFKLLSSVYGITPTLEHYACMVDILAKAGKLAEAESLINEMPLTPDASLWKTIL 740

Query: 510 SACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSK 569
            ACR+HG +E+AE  A +L E++P++ ++  LLS + ++   W    ++  ++  +G+ K
Sbjct: 741 GACRMHGNIEIAERAAEKLFESQPDDISSCILLSNIYADLKRWNDVAKLRSMLVDRGVKK 800

Query: 570 SYGFSRIE 577
             G S IE
Sbjct: 801 EPGCSWIE 808



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/415 (28%), Positives = 207/415 (49%), Gaps = 5/415 (1%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPY 91
           + ++ CA ++  +  G  LH   L+SG   D  + +SL++MY K  +   A  +FD MP+
Sbjct: 65  AALQGCAASRALRR-GKALHARLLRSGPRPDAFLHDSLLNMYCKCGRLADARSVFDGMPH 123

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQI 151
           RD ++W ++++  T  G    +L +F EM   G V     LA  +  C+   +L    Q+
Sbjct: 124 RDVVAWTAMVSAITAAGDAGAALRLFAEMSEEGVVPNGFALAAALKACTVGSDLGFTPQV 183

Query: 152 HALVI-VDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQ 210
           HA  + ++G F+   +VS++L++ Y  C    +A R      +R++VSW A+++      
Sbjct: 184 HAQAVKLEGLFD--PYVSSSLVEAYVSCGEVDVAERALLDSPVRSDVSWNALLNEYARDG 241

Query: 211 NYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSA 270
           +Y   + +F  +   G + ++ TL  VL  C EL   ++G+A+HG     G + D  L+ 
Sbjct: 242 DYAKVMLVFDKLVESGDEISKYTLPTVLKCCMELGLAKSGQAVHGLVIKRGLETDRVLNN 301

Query: 271 ALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE 330
            L+ MY +C  A   A  +F R    DVV  S +I  + +     EA  +F +M    ++
Sbjct: 302 CLIEMYSKCLSA-EDAYEVFARIDEPDVVHCSLMISCFDRHDMAPEAFDIFMQMSDMGVK 360

Query: 331 PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQI 390
           PN  T + +    +R   ++    +H +I+K+G +    + +A++ MY K G++  +   
Sbjct: 361 PNQYTFVGLAIVASRTGDVNLCRSIHAHIVKSGFSRTKGVCDAIVGMYVKTGAVQDAILA 420

Query: 391 FNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
           F+ M   D  SW TL+SG+      E  L++F E+   GV  +  T + IL  C 
Sbjct: 421 FDLMQGPDIASWNTLLSGFYSGNNCEHGLRIFKELICEGVLANKYTYVGILRCCT 475



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 147/315 (46%), Gaps = 4/315 (1%)

Query: 238 LLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKD 297
           L  CA  R LR GKA+H      G   D  L  +L++MYC+C   L  AR +F+    +D
Sbjct: 67  LQGCAASRALRRGKALHARLLRSGPRPDAFLHDSLLNMYCKCGR-LADARSVFDGMPHRD 125

Query: 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHC 357
           VV W++++   + +GD   A++LF+ M  E + PN   L A L +CT  S L     VH 
Sbjct: 126 VVAWTAMVSAITAAGDAGAALRLFAEMSEEGVVPNGFALAAALKACTVGSDLGFTPQVHA 185

Query: 358 YIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEE 417
             +K    FD  + ++L+  Y  CG +  + +   +   R  VSW  L++ Y   G   +
Sbjct: 186 QAVKLEGLFDPYVSSSLVEAYVSCGEVDVAERALLDSPVRSDVSWNALLNEYARDGDYAK 245

Query: 418 ALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYV 477
            + +F ++ ESG E    T+  +L  C   GL K  + +   V+K + +        C +
Sbjct: 246 VMLVFDKLVESGDEISKYTLPTVLKCCMELGLAKSGQAVHGLVIK-RGLETDRVLNNCLI 304

Query: 478 DLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE-AEPENA 536
           ++  K    EDA +V + +  +P     S ++S    H     A  +  Q+ +     N 
Sbjct: 305 EMYSKCLSAEDAYEVFARID-EPDVVHCSLMISCFDRHDMAPEAFDIFMQMSDMGVKPNQ 363

Query: 537 ANYTLLSMVCSESGN 551
             +  L++V S +G+
Sbjct: 364 YTFVGLAIVASRTGD 378



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 63/123 (51%), Gaps = 2/123 (1%)

Query: 323 RMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCG 382
           R+RL   E  S    A L  C     L  G  +H  ++++G   D  + ++L+NMY KCG
Sbjct: 52  RLRLRAEELRSYA--AALQGCAASRALRRGKALHARLLRSGPRPDAFLHDSLLNMYCKCG 109

Query: 383 SITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILS 442
            +  +  +F+ M  RD V+WT ++S     G    AL+LF EM E GV P+   + A L 
Sbjct: 110 RLADARSVFDGMPHRDVVAWTAMVSAITAAGDAGAALRLFAEMSEEGVVPNGFALAAALK 169

Query: 443 ACN 445
           AC 
Sbjct: 170 ACT 172


>gi|218187045|gb|EEC69472.1| hypothetical protein OsI_38669 [Oryza sativa Indica Group]
          Length = 1084

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 182/571 (31%), Positives = 305/571 (53%), Gaps = 30/571 (5%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E  L ++ +E+  SGL  +   + S++ ACA     Q  G QLH    K+G  +D ++  
Sbjct: 226 EHALEIF-EEMQSSGLSPDCVTISSLLAACASLGDLQK-GTQLHSYLFKAGMSSDYIMEG 283

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           SL+ +Y K    E+A  +F+     + + WN I+  F Q     +S E+F +M   G   
Sbjct: 284 SLLDLYVKCGDVETALVIFNLGNRTNVVLWNLILVAFGQINDLAKSFELFCQMQTAGIRP 343

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL-IALR 186
                  I+  C+  GE++LG QIH+L +  G FE  ++VS  L+D+YSK + WL  A R
Sbjct: 344 NQFTYPCILRTCTCTGEIDLGEQIHSLSVKTG-FESDMYVSGVLIDMYSK-YGWLEKARR 401

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           V E +  ++ VSWT+MI+G +  +     +  F+ MQ+ G+ P  + L   +  CA ++ 
Sbjct: 402 VLEMLKEKDVVSWTSMIAGYVQHEYCKDALAAFKEMQKCGIWPDNIGLASAISGCAGIKA 461

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           +R G  IH   Y  G+  D  +  AL+++Y  C   +  A   FE  + KD + W+ ++ 
Sbjct: 462 MRQGLQIHARVYVSGYSGDVSIWNALVNLYARCGR-IREAFSSFEEIEHKDEITWNGLVS 520

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           G++QSG   EA+K+F RM    ++ N  T ++ LS+    + +  G  +H  ++K G +F
Sbjct: 521 GFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSF 580

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           +  +GNAL+++Y KCGS   +   F+EM+ R+ VSW T+I+    HG G EAL  F +M+
Sbjct: 581 ETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDFFDQMK 640

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
           + G+                        + F ++  +  I    +HYAC +D+ G++G++
Sbjct: 641 KEGL------------------------SYFKSMSDKYGIRPRPDHYACVIDIFGRAGQL 676

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546
           + A K V  MP+     +  +L+SAC++H  +EV E+ A  L+E EP ++A+Y LLS   
Sbjct: 677 DRAKKFVEEMPIAADAMVWRTLLSACKVHKNIEVGELAAKHLLELEPHDSASYVLLSNAY 736

Query: 547 SESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           + +G W   ++V ++MR +G+ K  G S IE
Sbjct: 737 AVTGKWANRDQVRKMMRDRGVRKEPGRSWIE 767



 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 152/510 (29%), Positives = 263/510 (51%), Gaps = 6/510 (1%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E+ L LY+Q +H +G+     +L SV+ +C  A+     G  +H    K G  ++  + N
Sbjct: 125 EEALWLYRQ-MHRAGVVPTPYVLSSVLSSCTKAELFAQ-GRSVHAQGYKQGFCSETFVGN 182

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +LI++Y +      A ++F +MP+RDT+++N++I+   Q      +LE+F EM   G   
Sbjct: 183 ALITLYLRCGSFRLAERVFYDMPHRDTVTFNTLISGHAQCAHGEHALEIFEEMQSSGLSP 242

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
               ++ +++ C+ +G+L+ G Q+H+ +   G       +  +LLDLY KC     AL +
Sbjct: 243 DCVTISSLLAACASLGDLQKGTQLHSYLFKAG-MSSDYIMEGSLLDLYVKCGDVETALVI 301

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F      N V W  ++       +     +LF  MQ  G++P + T   +L  C    ++
Sbjct: 302 FNLGNRTNVVLWNLILVAFGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRTCTCTGEI 361

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
             G+ IH  +   GF+ D ++S  L+ MY +    L  AR + E  K KDVV W+S+I G
Sbjct: 362 DLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYG-WLEKARRVLEMLKEKDVVSWTSMIAG 420

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
           Y Q     +A+  F  M+   I P+++ L + +S C     +  GL +H  +  +G + D
Sbjct: 421 YVQHEYCKDALAAFKEMQKCGIWPDNIGLASAISGCAGIKAMRQGLQIHARVYVSGYSGD 480

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
           VSI NAL+N+Y++CG I  +   F E+  +D ++W  L+SG+   G  EEAL++F+ M +
Sbjct: 481 VSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQ 540

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487
           SGV+ +  T ++ LSA  +   +K+ + +   V+K    +   E     + L GK G  E
Sbjct: 541 SGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGH-SFETEVGNALISLYGKCGSFE 599

Query: 488 DACKVVSTMPMKPSTRILSSLVSACRIHGR 517
           DA    S M  +      ++++++C  HGR
Sbjct: 600 DAKMEFSEMSERNEVS-WNTIITSCSQHGR 628



 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 128/411 (31%), Positives = 223/411 (54%), Gaps = 2/411 (0%)

Query: 34  IKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRD 93
           ++AC           ++H  A+  G   D ++ N LI +Y+K      A ++F+E+  RD
Sbjct: 48  LRACRGNGRRWQVVPEIHAKAITRGLGKDRIVGNLLIDLYSKNGLVLPARRVFEELSARD 107

Query: 94  TISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHA 153
            +SW ++++ + QNG    +L ++R+M+  G V    +L+ ++S C++      GR +HA
Sbjct: 108 NVSWVAMLSGYAQNGLGEEALWLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRSVHA 167

Query: 154 LVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYD 213
                G F    FV  AL+ LY +C  + +A RVF  M  R+ V++  +ISG     + +
Sbjct: 168 QGYKQG-FCSETFVGNALITLYLRCGSFRLAERVFYDMPHRDTVTFNTLISGHAQCAHGE 226

Query: 214 TGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALM 273
             +++F  MQ  G+ P  VT++ +L ACA L DL+ G  +H Y +  G   D+ +  +L+
Sbjct: 227 HALEIFEEMQSSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGMSSDYIMEGSLL 286

Query: 274 HMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNS 333
            +Y +C + +  A +IF      +VV+W+ I+  + Q  DL+++ +LF +M+   I PN 
Sbjct: 287 DLYVKCGD-VETALVIFNLGNRTNVVLWNLILVAFGQINDLAKSFELFCQMQTAGIRPNQ 345

Query: 334 VTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNE 393
            T   IL +CT    +  G  +H   +K G   D+ +   L++MYSK G +  + ++   
Sbjct: 346 FTYPCILRTCTCTGEIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEM 405

Query: 394 MAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
           +  +D VSWT++I+GY  H Y ++AL  F EMQ+ G+ PD I + + +S C
Sbjct: 406 LKEKDVVSWTSMIAGYVQHEYCKDALAAFKEMQKCGIWPDNIGLASAISGC 456



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 101/352 (28%), Positives = 178/352 (50%), Gaps = 7/352 (1%)

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
           +IHA  I  G  +  + V   L+DLYSK    L A RVFE++  R+ VSW AM+SG   +
Sbjct: 63  EIHAKAITRGLGKDRI-VGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQN 121

Query: 210 QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS 269
              +  + L+R M R GV PT   L+ VL +C +      G+++H   Y  GF  +  + 
Sbjct: 122 GLGEEALWLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRSVHAQGYKQGFCSETFVG 181

Query: 270 AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
            AL+ +Y  C       R+ ++    +D V ++++I G++Q      A+++F  M+   +
Sbjct: 182 NALITLYLRCGSFRLAERVFYDMPH-RDTVTFNTLISGHAQCAHGEHALEIFEEMQSSGL 240

Query: 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
            P+ VT+ ++L++C     L  G  +H Y+ KAG++ D  +  +L+++Y KCG + ++  
Sbjct: 241 SPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVETALV 300

Query: 390 IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL 449
           IFN     + V W  ++  +G      ++ +LF +MQ +G+ P+  T   IL  C   G 
Sbjct: 301 IFNLGNRTNVVLWNLILVAFGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRTCTCTGE 360

Query: 450 VKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDACKVVSTMPMK 499
           +   E + +  +   K     + Y     +D+  K G +E A +V+  +  K
Sbjct: 361 IDLGEQIHSLSV---KTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEK 409



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/302 (31%), Positives = 152/302 (50%), Gaps = 7/302 (2%)

Query: 191 MVIRNEVSWTAMISGCIDSQNYDTGIDLF--RAMQREGVKPTRVTLTIVLLAC-AELRDL 247
           M  R   S    ++G +  ++    + LF  +A Q  G+ P  +     L AC    R  
Sbjct: 1   MTRRGAASLGWSLAGFLAQEDPAKVLSLFADKARQHGGLGP--LDFACALRACRGNGRRW 58

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
           +    IH  A   G   D  +   L+ +Y +    L PAR +FE    +D V W +++ G
Sbjct: 59  QVVPEIHAKAITRGLGKDRIVGNLLIDLYSKNGLVL-PARRVFEELSARDNVSWVAMLSG 117

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
           Y+Q+G   EA+ L+ +M    + P    L ++LSSCT+    + G  VH    K G   +
Sbjct: 118 YAQNGLGEEALWLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRSVHAQGYKQGFCSE 177

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
             +GNAL+ +Y +CGS   + ++F +M  RD V++ TLISG+    +GE AL++F EMQ 
Sbjct: 178 TFVGNALITLYLRCGSFRLAERVFYDMPHRDTVTFNTLISGHAQCAHGEHALEIFEEMQS 237

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487
           SG+ PD +T+ ++L+AC   G +++   L + + K    +  I      +DL  K G +E
Sbjct: 238 SGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGMSSDYIME-GSLLDLYVKCGDVE 296

Query: 488 DA 489
            A
Sbjct: 297 TA 298


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 175/563 (31%), Positives = 311/563 (55%), Gaps = 13/563 (2%)

Query: 19  HPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGS-DADPVISNSLISMYAKFS 77
           HP  L  ++   P +++A     +      QLH  AL+ G    +   S SL+  Y +F 
Sbjct: 63  HP--LRPDSFTFPPLVRAAPGPAS----AAQLHACALRLGLLHPNVFASGSLVHAYLRFG 116

Query: 78  KPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS 137
           +   AY++FDEMP RD  +WN++++   +N     ++ +   M   G    A  L+ ++ 
Sbjct: 117 RVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLP 176

Query: 138 LCSQIGELELGRQIHALVIVDG-SFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
           +C  +G+  L   +H   +  G S EL  FV  AL+D+Y K      A  VF  M +R+ 
Sbjct: 177 MCVVLGDRALALVMHVYAVKHGLSGEL--FVCNALIDVYGKLGMLTEAHWVFGGMALRDL 234

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           V+W ++IS           ++LF  M   GV P  +TL  +  A A+  D    K++H Y
Sbjct: 235 VTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCY 294

Query: 257 AYCCGFDFDHHLSA-ALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
               G+D    ++  A++ MY + ++ +  A+ +F+    +DVV W+++I GY Q+G  +
Sbjct: 295 VRRRGWDVGDIIAGNAMVDMYAKMSK-IDAAQKVFDNLPDRDVVSWNTLITGYMQNGLAN 353

Query: 316 EAMKLFSRM-RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
           EA+++++ M   E ++P   T +++L + +    L  G+ +H   +K GLN DV +   L
Sbjct: 354 EAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCL 413

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           +++Y+KCG +  +  +F  M  R    W  +I+G G HG+G +AL LF +MQ+  ++PD 
Sbjct: 414 IDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDH 473

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS 494
           +T +++L+AC+HAGLV +  + F+ +     I    +HY C VD+LG++G++++A + + 
Sbjct: 474 VTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQ 533

Query: 495 TMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLG 554
           +MP+KP + +  +L+ ACRIHG +E+ ++ +  L E +PEN   Y L+S + ++ G W G
Sbjct: 534 SMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKIGKWDG 593

Query: 555 AEEVWRVMRAKGLSKSYGFSRIE 577
            + V  ++R + L K+ G+S +E
Sbjct: 594 VDAVRSLVRRQNLQKTPGWSSME 616


>gi|449461477|ref|XP_004148468.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
 gi|449515698|ref|XP_004164885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
          Length = 837

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 190/571 (33%), Positives = 314/571 (54%), Gaps = 7/571 (1%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E +L L+   +  S +  +  +L S++ AC+    +   G Q+H   L+S +  D    N
Sbjct: 225 EVSLQLFNLMME-SNVIPDKYVLSSILNACS-VLGYLKGGKQIHAYVLRSETKMDVSTYN 282

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
            LI  Y K  + ++   LFD +  ++ ISW ++I  + QN +   ++E+  EM+  G+  
Sbjct: 283 VLIDFYTKCGRVKAGKALFDRLDVKNIISWTTMIAGYMQNSYDWEAVELVGEMFRMGWKP 342

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
                + +++ C  +  L+ GRQIH+ VI     E   FV+ AL+D+YSKC+    A RV
Sbjct: 343 DEYACSSVLTSCGSVDALQHGRQIHSYVI-KVCLEHDNFVTNALIDMYSKCNALDDAKRV 401

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTG-IDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           F+ +   + V + AMI G    Q Y  G +++F+ M+ + V P+ +T   +L   A L  
Sbjct: 402 FDVVTCHSVVYYNAMIEG-YSRQGYLCGALEVFQEMRLKHVSPSFLTFVSLLGLSAALLC 460

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L+  K IHG     GF  D   S+AL+ +Y +C+  +  AR +FE T  KD+V+W+S+  
Sbjct: 461 LQLSKQIHGLIIKYGFSLDKFTSSALIDVYSKCS-CIRDARYVFEGTTNKDIVVWNSLFS 519

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           GY+      EA KL+S ++L R  PN  T  A+ ++ +  + L HG   H  +MK GL  
Sbjct: 520 GYNLQLKSEEAFKLYSDLQLSRERPNEFTFAALTTAASILASLPHGQQFHNQVMKMGLES 579

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           D  I NAL++MY+KCGS+  + +IF+    +D   W ++IS Y  HG  EEAL++F  M 
Sbjct: 580 DPFITNALVDMYAKCGSVEEAEKIFSSSVWKDTACWNSMISMYAQHGKVEEALRMFETMV 639

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
            + + P+ +T +++LSAC+H G V++    +N+ M    I   IEHYA  V LLG++G++
Sbjct: 640 SNNINPNYVTFVSVLSACSHVGFVEDGLQHYNS-MARYGIEPGIEHYASVVTLLGRAGRL 698

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546
            +A + +  M ++P+  +  SL+SACR+ G +E+A+  A   I  +P ++ +Y +LS + 
Sbjct: 699 TEAREFIEKMTIRPAALVWRSLLSACRVFGNVELAKHAAEMAISIDPMDSGSYVMLSNIF 758

Query: 547 SESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +  G W   + +   M   G+ K  G S IE
Sbjct: 759 ASKGMWGDVKRLRLKMDVNGVVKEPGQSWIE 789



 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 155/529 (29%), Positives = 271/529 (51%), Gaps = 12/529 (2%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           N  IL S+I+AC      +  G Q+H   +KSG   D  +  SL+ +YAK  + + A  +
Sbjct: 141 NEYILASIIRACVQRDGGEP-GSQVHSYVIKSGFGEDVYVGTSLVVLYAKHGEIDKARLV 199

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL 145
           FD +  +  ++W +II  +T++G    SL++F  M     +    +L+ I++ CS +G L
Sbjct: 200 FDGLVLKTPVTWTAIITGYTKSGRSEVSLQLFNLMMESNVIPDKYVLSSILNACSVLGYL 259

Query: 146 ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISG 205
           + G+QIHA V+   + ++ V     L+D Y+KC        +F+++ ++N +SWT MI+G
Sbjct: 260 KGGKQIHAYVLRSET-KMDVSTYNVLIDFYTKCGRVKAGKALFDRLDVKNIISWTTMIAG 318

Query: 206 CIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFD 265
            + +      ++L   M R G KP     + VL +C  +  L++G+ IH Y      + D
Sbjct: 319 YMQNSYDWEAVELVGEMFRMGWKPDEYACSSVLTSCGSVDALQHGRQIHSYVIKVCLEHD 378

Query: 266 HHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR 325
           + ++ AL+ MY +C  AL  A+ +F+      VV ++++I GYS+ G L  A+++F  MR
Sbjct: 379 NFVTNALIDMYSKCN-ALDDAKRVFDVVTCHSVVYYNAMIEGYSRQGYLCGALEVFQEMR 437

Query: 326 LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSIT 385
           L+ + P+ +T +++L        L     +H  I+K G + D    +AL+++YSKC  I 
Sbjct: 438 LKHVSPSFLTFVSLLGLSAALLCLQLSKQIHGLIIKYGFSLDKFTSSALIDVYSKCSCIR 497

Query: 386 SSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
            +  +F     +D V W +L SGY      EEA +L+ ++Q S   P+  T  A+ +A +
Sbjct: 498 DARYVFEGTTNKDIVVWNSLFSGYNLQLKSEEAFKLYSDLQLSRERPNEFTFAALTTAAS 557

Query: 446 HAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDACKVVSTMPMKPSTR 503
               +   +   N VM   K+ L  + +     VD+  K G +E+A K+ S+   K  T 
Sbjct: 558 ILASLPHGQQFHNQVM---KMGLESDPFITNALVDMYAKCGSVEEAEKIFSSSVWK-DTA 613

Query: 504 ILSSLVSACRIHGRLEVAEMLAHQLI--EAEPENAANYTLLSMVCSESG 550
             +S++S    HG++E A  +   ++     P      ++LS  CS  G
Sbjct: 614 CWNSMISMYAQHGKVEEALRMFETMVSNNINPNYVTFVSVLS-ACSHVG 661



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 127/389 (32%), Positives = 203/389 (52%), Gaps = 3/389 (0%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           ++HC  +  G   D  +SN L+  Y K      A  LFD+MP R+ +SW+S+++ +TQ G
Sbjct: 61  KVHCQVVLWGLQYDVFLSNLLLHSYFKIGSVFDAGTLFDKMPNRNLVSWSSVVSMYTQLG 120

Query: 109 FYVRSLEMFREMY-LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFV 167
           +  ++L  F E    C   L   +LA II  C Q    E G Q+H+ VI  G F   V+V
Sbjct: 121 YNEKALLYFLEFQRTCVDKLNEYILASIIRACVQRDGGEPGSQVHSYVIKSG-FGEDVYV 179

Query: 168 STALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV 227
            T+L+ LY+K      A  VF+ +V++  V+WTA+I+G   S   +  + LF  M    V
Sbjct: 180 GTSLVVLYAKHGEIDKARLVFDGLVLKTPVTWTAIITGYTKSGRSEVSLQLFNLMMESNV 239

Query: 228 KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPAR 287
            P +  L+ +L AC+ L  L+ GK IH Y        D      L+  Y +C   +   +
Sbjct: 240 IPDKYVLSSILNACSVLGYLKGGKQIHAYVLRSETKMDVSTYNVLIDFYTKCGR-VKAGK 298

Query: 288 IIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQS 347
            +F+R  VK+++ W+++I GY Q+    EA++L   M     +P+     ++L+SC    
Sbjct: 299 ALFDRLDVKNIISWTTMIAGYMQNSYDWEAVELVGEMFRMGWKPDEYACSSVLTSCGSVD 358

Query: 348 FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLIS 407
            L HG  +H Y++K  L  D  + NAL++MYSKC ++  + ++F+ +     V +  +I 
Sbjct: 359 ALQHGRQIHSYVIKVCLEHDNFVTNALIDMYSKCNALDDAKRVFDVVTCHSVVYYNAMIE 418

Query: 408 GYGFHGYGEEALQLFLEMQESGVEPDAIT 436
           GY   GY   AL++F EM+   V P  +T
Sbjct: 419 GYSRQGYLCGALEVFQEMRLKHVSPSFLT 447



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 181/349 (51%), Gaps = 12/349 (3%)

Query: 149 RQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCID 208
           R++H  V++ G  +  VF+S  LL  Y K      A  +F++M  RN VSW++++S    
Sbjct: 60  RKVHCQVVLWG-LQYDVFLSNLLLHSYFKIGSVFDAGTLFDKMPNRNLVSWSSVVSMYTQ 118

Query: 209 SQNYDTGIDLFRAMQREGV-KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
               +  +  F   QR  V K     L  ++ AC +      G  +H Y    GF  D +
Sbjct: 119 LGYNEKALLYFLEFQRTCVDKLNEYILASIIRACVQRDGGEPGSQVHSYVIKSGFGEDVY 178

Query: 268 LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
           +  +L+ +Y +  E +  AR++F+   +K  V W++II GY++SG    +++LF+ M   
Sbjct: 179 VGTSLVVLYAKHGE-IDKARLVFDGLVLKTPVTWTAIITGYTKSGRSEVSLQLFNLMMES 237

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
            + P+   L +IL++C+   +L  G  +H Y++++    DVS  N L++ Y+KCG + + 
Sbjct: 238 NVIPDKYVLSSILNACSVLGYLKGGKQIHAYVLRSETKMDVSTYNVLIDFYTKCGRVKAG 297

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHA 447
             +F+ +  ++ +SWTT+I+GY  + Y  EA++L  EM   G +PD     ++L++C   
Sbjct: 298 KALFDRLDVKNIISWTTMIAGYMQNSYDWEAVELVGEMFRMGWKPDEYACSSVLTSCGSV 357

Query: 448 GLVKEAETLFNNVMKEKKIALAIEH----YACYVDLLGKSGKIEDACKV 492
             ++    + + V+K     + +EH        +D+  K   ++DA +V
Sbjct: 358 DALQHGRQIHSYVIK-----VCLEHDNFVTNALIDMYSKCNALDDAKRV 401



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 142/283 (50%), Gaps = 3/283 (1%)

Query: 218 LFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYC 277
           +  +   + VK     L  +LLA    + +   + +H      G  +D  LS  L+H Y 
Sbjct: 27  MLPSFSSQNVKVKGRALANLLLAPVSNKSILYYRKVHCQVVLWGLQYDVFLSNLLLHSYF 86

Query: 278 ECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP-NSVTL 336
           +   ++  A  +F++   +++V WSS++  Y+Q G   +A+  F   +   ++  N   L
Sbjct: 87  KIG-SVFDAGTLFDKMPNRNLVSWSSVVSMYTQLGYNEKALLYFLEFQRTCVDKLNEYIL 145

Query: 337 LAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA 396
            +I+ +C ++     G  VH Y++K+G   DV +G +L+ +Y+K G I  +  +F+ +  
Sbjct: 146 ASIIRACVQRDGGEPGSQVHSYVIKSGFGEDVYVGTSLVVLYAKHGEIDKARLVFDGLVL 205

Query: 397 RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETL 456
           +  V+WT +I+GY   G  E +LQLF  M ES V PD   + +IL+AC+  G +K  + +
Sbjct: 206 KTPVTWTAIITGYTKSGRSEVSLQLFNLMMESNVIPDKYVLSSILNACSVLGYLKGGKQI 265

Query: 457 FNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
              V++ +   + +  Y   +D   K G+++    +   + +K
Sbjct: 266 HAYVLRSET-KMDVSTYNVLIDFYTKCGRVKAGKALFDRLDVK 307


>gi|225435444|ref|XP_002282803.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g40720-like [Vitis vinifera]
          Length = 854

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 183/583 (31%), Positives = 321/583 (55%), Gaps = 12/583 (2%)

Query: 1   MVSKHF----YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALK 56
           M+S ++    Y + L L+ Q L     +    +L +V +ACA   + +  G Q+H  A+K
Sbjct: 226 MISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAV-QACAELGSLK-LGKQIHQLAIK 283

Query: 57  SGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEM 116
                D  I N+L++MY+     ES++QLF+ +P RD   WNS+I+ +   G +  ++++
Sbjct: 284 FEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMDL 343

Query: 117 FREMYLCGFVLKAELLAGIISLCSQIGE-LELGRQIHALVIVDGSFELSVFVSTALLDLY 175
           F  M   G       +  ++S+C ++   L  G+ +HA VI  G   +   +  ALL +Y
Sbjct: 344 FIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKSG-MRIDASLGNALLSMY 402

Query: 176 SKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLT 235
           ++ +      ++F++M   + +SW  MI     +       +LF  M+   +KP   T+ 
Sbjct: 403 TELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFERMRESEIKPNSYTII 462

Query: 236 IVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV 295
            +L AC ++  L  G++IHGY      + +  L  AL  MY  C +    AR +FE    
Sbjct: 463 SILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTALADMYMNCGDE-ATARDLFEGCPD 521

Query: 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV 355
           +D++ W+++I  Y ++    +A+ LF RM +   EPNSVT++ +LSS T  + L  G  +
Sbjct: 522 RDLISWNAMIASYVKNNQAHKALLLFHRM-ISEAEPNSVTIINVLSSFTHLATLPQGQSL 580

Query: 356 HCYIMKAG--LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHG 413
           H Y+ + G  L  D+S+ NA + MY++CGS+ S+  IF  +  R+ +SW  +I+GYG +G
Sbjct: 581 HAYVTRRGFSLGLDLSLANAFITMYARCGSLQSAENIFKTLPKRNIISWNAMIAGYGMNG 640

Query: 414 YGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY 473
            G +A+  F +M E G  P+ +T +++LSAC+H+G ++    LF++++++  +   + HY
Sbjct: 641 RGSDAMLAFSQMLEDGFRPNGVTFVSVLSACSHSGFIEMGLQLFHSMVQDFNVTPELVHY 700

Query: 474 ACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEP 533
           +C VDLL + G I++A + + +MP++P   +  +L+S+CR +   + A+ +  +L + EP
Sbjct: 701 SCIVDLLARGGCIDEAREFIDSMPIEPDASVWRALLSSCRAYSDAKQAKTIFEKLDKLEP 760

Query: 534 ENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
            NA NY LLS V + +G WL    +   ++ KGL K  G S I
Sbjct: 761 MNAGNYVLLSNVYATAGLWLEVRRIRTWLKEKGLRKPPGISWI 803



 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 162/531 (30%), Positives = 268/531 (50%), Gaps = 21/531 (3%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G+  N   LP V+KACA AQ     G  +H +   +    D  +  +++  Y K    E 
Sbjct: 48  GVLPNNTTLPLVLKACA-AQNAVERGKSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVED 106

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A  +FD M  RD + WN+++  +   G Y  ++ + REM        +  +  ++  C  
Sbjct: 107 ARCVFDAMSDRDVVLWNAMVYGYVGWGCYEEAMLLVREMGRENLRPNSRTMVALLLACEG 166

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
             EL LGR +H   + +G F+ +  V+TAL+  Y +    ++ L +F+ MV+RN VSW A
Sbjct: 167 ASELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLRFDMRVLPL-LFDLMVVRNIVSWNA 225

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           MISG  D  +Y   ++LF  M  + VK   VT+ + + ACAEL  L+ GK IH  A    
Sbjct: 226 MISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKLGKQIHQLAIKFE 285

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
           F  D ++  AL++MY     +L  +  +FE    +D  +W+S+I  Y+  G   EAM LF
Sbjct: 286 FVEDLYILNALLNMYSN-NGSLESSHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLF 344

Query: 322 SRMRLERIEPNSVTLLAILSSCTR-QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
            RM+ E ++ +  T++ +LS C    S L  G  +H +++K+G+  D S+GNAL++MY++
Sbjct: 345 IRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKSGMRIDASLGNALLSMYTE 404

Query: 381 CGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
              + S  +IF+ M   D +SW T+I     +    +A +LF  M+ES ++P++ T+++I
Sbjct: 405 LNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFERMRESEIKPNSYTIISI 464

Query: 441 LSACNHAGLVKEAETLFNNVMKEK-------KIALAIEHYACYVDLLGKSGKIEDACKVV 493
           L+AC     +    ++   VMK         + ALA  +  C     G      D  +  
Sbjct: 465 LAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTALADMYMNC-----GDEATARDLFEGC 519

Query: 494 STMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLI-EAEPENAANYTLLS 543
               +     +++S V   + H  L    +L H++I EAEP +     +LS
Sbjct: 520 PDRDLISWNAMIASYVKNNQAHKAL----LLFHRMISEAEPNSVTIINVLS 566



 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 124/374 (33%), Positives = 195/374 (52%), Gaps = 7/374 (1%)

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQI 151
           +D   WNS+I            L  + +M   G +     L  ++  C+    +E G+ I
Sbjct: 16  KDPKHWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERGKSI 75

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQN 211
           H   I        V V TA++D Y KC     A  VF+ M  R+ V W AM+ G +    
Sbjct: 76  HR-SIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGWGC 134

Query: 212 YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG-FDFDHHLSA 270
           Y+  + L R M RE ++P   T+  +LLAC    +LR G+ +HGY    G FD + H++ 
Sbjct: 135 YEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVAT 194

Query: 271 ALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE 330
           AL+  Y      + P  ++F+   V+++V W+++I GY   GD  +A++LF +M ++ ++
Sbjct: 195 ALIGFYLRFDMRVLP--LLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVK 252

Query: 331 PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQI 390
            + VT+L  + +C     L  G  +H   +K     D+ I NAL+NMYS  GS+ SSHQ+
Sbjct: 253 FDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQL 312

Query: 391 FNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH--AG 448
           F  +  RD   W ++IS Y   G  EEA+ LF+ MQ  GV+ D  TV+ +LS C    +G
Sbjct: 313 FESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASG 372

Query: 449 LVKEAETLFNNVMK 462
           L+K  ++L  +V+K
Sbjct: 373 LLK-GKSLHAHVIK 385



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 166/324 (51%), Gaps = 7/324 (2%)

Query: 190 QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
           ++ I++   W ++I    + +N    +  +  M+  GV P   TL +VL ACA    +  
Sbjct: 12  KIQIKDPKHWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVER 71

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
           GK+IH          D  +  A++  YC+C   +  AR +F+    +DVV+W++++ GY 
Sbjct: 72  GKSIHRSIQGTDLMDDVRVGTAVVDFYCKCG-FVEDARCVFDAMSDRDVVLWNAMVYGYV 130

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
             G   EAM L   M  E + PNS T++A+L +C   S L  G GVH Y ++ G+ FD +
Sbjct: 131 GWGCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGM-FDSN 189

Query: 370 --IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
             +  AL+  Y +   +     +F+ M  R+ VSW  +ISGY   G   +AL+LF++M  
Sbjct: 190 PHVATALIGFYLRF-DMRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLV 248

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487
             V+ D +T+L  + AC   G +K  + +    +K + +   +      +++   +G +E
Sbjct: 249 DEVKFDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVE-DLYILNALLNMYSNNGSLE 307

Query: 488 DACKVVSTMPMKPSTRILSSLVSA 511
            + ++  ++P + +  + +S++SA
Sbjct: 308 SSHQLFESVPNRDAP-LWNSMISA 330


>gi|224083626|ref|XP_002307076.1| predicted protein [Populus trichocarpa]
 gi|222856525|gb|EEE94072.1| predicted protein [Populus trichocarpa]
          Length = 733

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 197/610 (32%), Positives = 310/610 (50%), Gaps = 64/610 (10%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA-DPVISNSLISMYAKFSKPESAYQ 84
           N   +P ++  CA     +  G  +H    KSG  A +  + +S + MYAK    E A  
Sbjct: 129 NQFTIPMIVATCAELLWLEE-GKYIHGLVSKSGLFAENSAVGSSFVYMYAKCGVMEDASL 187

Query: 85  LFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF---VLKAELLAGIISLCSQ 141
           +FDE+  RD +SW +++  +  N    + LE   EM   G     + +  L G    C  
Sbjct: 188 MFDEIVVRDVVSWTALVIGYVHNDDSEKGLECLCEMRRIGGDGEKVNSRTLEGGFQACGN 247

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
           +G +  GR +H L +  G    S  V ++LL +YSKC +   A   F Q+V ++  SWT+
Sbjct: 248 LGAMIAGRCLHGLAVKTG-LGCSQVVQSSLLSMYSKCGNVEEAHNSFCQVVDKDVFSWTS 306

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG------ 255
           +I  C      +  ++LF  MQ + V P  + ++ +LL       +R GKA HG      
Sbjct: 307 VIGVCARFGFMNECLNLFWDMQVDDVYPDGIVVSCILLGFGNSMMVREGKAFHGLIVRRN 366

Query: 256 ---------------------------------------------YAYC----CGFDFDH 266
                                                        Y +C       D D 
Sbjct: 367 YVLDDTVNNALLSMYCKFGTLNPAEKLFDGVHEWSKESWNTMVFGYVHCYIIKNSVDEDV 426

Query: 267 HLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRL 326
            ++ +L+ MY +    L  A  +F RT+ +DVV W+++I  Y+ SG  +EA+ LF  M  
Sbjct: 427 SIANSLIDMYGKGGN-LSIAWKMFCRTQ-RDVVTWNTLISSYTHSGHYAEAITLFDEMIS 484

Query: 327 ERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITS 386
           E++ PNS TL+ +LS+C     L  G  VH YI + G   +VS+G AL++MY+KCG +  
Sbjct: 485 EKLNPNSATLVIVLSACCHLPSLEKGKMVHQYIKEGGFELNVSLGTALVDMYAKCGQLEQ 544

Query: 387 SHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH 446
           S ++FN M  +D +SW  +ISGYG HG    A+++F +M++S V+P+AIT L++LSAC H
Sbjct: 545 SRELFNSMKEKDVISWNVMISGYGLHGDANSAMEVFQQMEQSNVKPNAITFLSLLSACTH 604

Query: 447 AGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILS 506
           AG V E + LF+  M+   I   ++H+AC  DLLG+SG +++A  +V +MP+ P   +  
Sbjct: 605 AGYVDEGKQLFDR-MQYYSIKPNLKHFACMADLLGRSGNLQEAEDLVQSMPICPDGGVWG 663

Query: 507 SLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566
           +L+SAC+IH  +E+   +A   IE++PEN   Y +LS +    G W  AE    +M+ +G
Sbjct: 664 TLLSACKIHNEIEIGIRVAKCAIESDPENDGYYIMLSNMYGSMGKWDEAERARELMKERG 723

Query: 567 LSKSYGFSRI 576
           + K  G+S +
Sbjct: 724 IGKRAGWSAV 733



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 141/562 (25%), Positives = 254/562 (45%), Gaps = 69/562 (12%)

Query: 51  HCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFY 110
           H   + +G+  +  IS+ LIS+YA F KP S+  +FD    +DT  WNSII     NG Y
Sbjct: 52  HALIITTGNANNVFISSKLISLYASFRKPHSSTYVFDSTNQKDTFLWNSIIKSHFSNGNY 111

Query: 111 VRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTA 170
            ++ + + +M           +  I++ C+++  LE G+ IH LV   G F  +  V ++
Sbjct: 112 FKAFDFYIQMRYDNTPPNQFTIPMIVATCAELLWLEEGKYIHGLVSKSGLFAENSAVGSS 171

Query: 171 LLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR---EGV 227
            + +Y+KC     A  +F+++V+R+ VSWTA++ G + + + + G++    M+R   +G 
Sbjct: 172 FVYMYAKCGVMEDASLMFDEIVVRDVVSWTALVIGYVHNDDSEKGLECLCEMRRIGGDGE 231

Query: 228 KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPAR 287
           K    TL     AC  L  +  G+ +HG A   G      + ++L+ MY +C   +  A 
Sbjct: 232 KVNSRTLEGGFQACGNLGAMIAGRCLHGLAVKTGLGCSQVVQSSLLSMYSKCGN-VEEAH 290

Query: 288 IIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQS 347
             F +   KDV  W+S+I   ++ G ++E + LF  M+++ + P+ + +  IL       
Sbjct: 291 NSFCQVVDKDVFSWTSVIGVCARFGFMNECLNLFWDMQVDDVYPDGIVVSCILLGFGNSM 350

Query: 348 FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLIS 407
            +  G   H  I++     D ++ NAL++MY K G++  + ++F+ +      SW T++ 
Sbjct: 351 MVREGKAFHGLIVRRNYVLDDTVNNALLSMYCKFGTLNPAEKLFDGVHEWSKESWNTMVF 410

Query: 408 GY---------------------GFHGYGEE---ALQLFLEMQESGVEPDAITVLAILSA 443
           GY                       +G G     A ++F   Q      D +T   ++S+
Sbjct: 411 GYVHCYIIKNSVDEDVSIANSLIDMYGKGGNLSIAWKMFCRTQR-----DVVTWNTLISS 465

Query: 444 CNHAGLVKEAETLFNNVMKEK----KIALAIEHYAC------------------------ 475
             H+G   EA TLF+ ++ EK       L I   AC                        
Sbjct: 466 YTHSGHYAEAITLFDEMISEKLNPNSATLVIVLSACCHLPSLEKGKMVHQYIKEGGFELN 525

Query: 476 ------YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLI 529
                  VD+  K G++E + ++ ++M  K      + ++S   +HG    A  +  Q+ 
Sbjct: 526 VSLGTALVDMYAKCGQLEQSRELFNSMKEKDVIS-WNVMISGYGLHGDANSAMEVFQQME 584

Query: 530 EAE-PENAANYTLLSMVCSESG 550
           ++    NA  +  L   C+ +G
Sbjct: 585 QSNVKPNAITFLSLLSACTHAG 606



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 167/335 (49%), Gaps = 10/335 (2%)

Query: 138 LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197
           L +Q   L+   + HAL+I  G+   +VF+S+ L+ LY+       +  VF+    ++  
Sbjct: 38  LSNQTQTLQSLHKSHALIITTGNAN-NVFISSKLISLYASFRKPHSSTYVFDSTNQKDTF 96

Query: 198 SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
            W ++I     + NY    D +  M+ +   P + T+ +++  CAEL  L  GK IHG  
Sbjct: 97  LWNSIIKSHFSNGNYFKAFDFYIQMRYDNTPPNQFTIPMIVATCAELLWLEEGKYIHGLV 156

Query: 258 YCCG-FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
              G F  +  + ++ ++MY +C   +  A ++F+   V+DVV W++++ GY  + D  +
Sbjct: 157 SKSGLFAENSAVGSSFVYMYAKCG-VMEDASLMFDEIVVRDVVSWTALVIGYVHNDDSEK 215

Query: 317 AMKLFSRMRLERI-----EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
            ++    MR  RI     + NS TL     +C     +  G  +H   +K GL     + 
Sbjct: 216 GLECLCEMR--RIGGDGEKVNSRTLEGGFQACGNLGAMIAGRCLHGLAVKTGLGCSQVVQ 273

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
           ++L++MYSKCG++  +H  F ++  +D  SWT++I      G+  E L LF +MQ   V 
Sbjct: 274 SSLLSMYSKCGNVEEAHNSFCQVVDKDVFSWTSVIGVCARFGFMNECLNLFWDMQVDDVY 333

Query: 432 PDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
           PD I V  IL    ++ +V+E +     +++   +
Sbjct: 334 PDGIVVSCILLGFGNSMMVREGKAFHGLIVRRNYV 368



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 75/145 (51%), Gaps = 2/145 (1%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           Y + + L+  E+    L  N+A L  V+ AC +  + +  G  +H    + G + +  + 
Sbjct: 472 YAEAITLF-DEMISEKLNPNSATLVIVLSACCHLPSLEK-GKMVHQYIKEGGFELNVSLG 529

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
            +L+ MYAK  + E + +LF+ M  +D ISWN +I+ +  +G    ++E+F++M      
Sbjct: 530 TALVDMYAKCGQLEQSRELFNSMKEKDVISWNVMISGYGLHGDANSAMEVFQQMEQSNVK 589

Query: 127 LKAELLAGIISLCSQIGELELGRQI 151
             A     ++S C+  G ++ G+Q+
Sbjct: 590 PNAITFLSLLSACTHAGYVDEGKQL 614


>gi|242076488|ref|XP_002448180.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
 gi|241939363|gb|EES12508.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
          Length = 1029

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 179/581 (30%), Positives = 315/581 (54%), Gaps = 13/581 (2%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V     E+T+ ++ Q +  + L ++     SV+ AC    +    G Q+HC  +K+  DA
Sbjct: 404 VQNDLQEETIQMF-QYMRRADLEADDFTFVSVLGACINLDSLD-IGRQVHCITIKNSMDA 461

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D  ++N+++ MY+K    + A  LF  +P +D++SWN++I     N     ++ M + M 
Sbjct: 462 DLFVANAMLDMYSKLGAIDVAKALFSLIPGKDSVSWNALIVGLAHNEEEEEAVYMLKRMK 521

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSV----FVSTALLDLYSK 177
             G        A  I+ CS I   E G+QIH       S + +V     V ++L+DLYSK
Sbjct: 522 CYGIAPDEVSFATAINACSNIRATETGKQIHC-----ASIKYNVCSNHAVGSSLIDLYSK 576

Query: 178 CHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIV 237
                 + +V   +   + V   A+I+G + +   D  I+LF+ + ++G KP+  T   +
Sbjct: 577 FGDVESSRKVLAHVDASSMVPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFASI 636

Query: 238 LLACAELRDLRNGKAIHGYAYCCGF-DFDHHLSAALMHMYCECTEALHPARIIFERTKVK 296
           L  C        GK +H Y       + D  L  +L+ +Y +C       +++ E    K
Sbjct: 637 LSGCTGPVSSVIGKQVHSYTLKSALLNQDTSLGISLVGIYLKCKLLEDANKLLAEVPDHK 696

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVH 356
           ++V W++ I GY+Q+G   +++ +F RMR   +  +  T  ++L +C+  + L+ G  +H
Sbjct: 697 NLVEWTATISGYAQNGYSDQSLVMFWRMRSHDVRSDEATFASVLKACSEIAALTDGKEIH 756

Query: 357 CYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFHGYG 415
             I+K+G     +  +ALM+MYSKCG + SS +IF E+  + + + W ++I G+  +GY 
Sbjct: 757 GLIIKSGFVSYETAASALMDMYSKCGDVISSFEIFKELKNKQNIMPWNSMIVGFAKNGYA 816

Query: 416 EEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC 475
            EAL LF +MQES ++PD +T+L +L AC+HAGL+ E   LF+++ +   I   ++HYAC
Sbjct: 817 NEALLLFQKMQESQLKPDEVTLLGVLIACSHAGLISEGRNLFDSMSQVYGIVPRVDHYAC 876

Query: 476 YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPEN 535
            +DLLG+ G +++A +V+  +P +    I ++ ++AC++H   E  ++ A +L+E EP+ 
Sbjct: 877 LIDLLGRGGHLQEAQEVIDQLPFRADGVIWATFLAACQMHKDEERGKVAAKKLVEMEPQR 936

Query: 536 AANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
           ++ Y  LS + + +GNW+ A+     MR KG+ K  G S I
Sbjct: 937 SSTYVFLSSLHAAAGNWVEAKVAREAMREKGVMKFPGCSWI 977



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 136/546 (24%), Positives = 271/546 (49%), Gaps = 10/546 (1%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           +   LYK ++   GL    +   S++ A A + T    G Q+H  A+K G DA+  + +S
Sbjct: 310 EVFGLYK-DMKRQGLMPTRSTFASMLSAAA-SMTAFDEGQQIHAAAVKHGLDANVFVGSS 367

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           LI++Y K      A ++FD    ++ + WN+++  F QN     +++MF+ M        
Sbjct: 368 LINLYVKHGCISDAKKVFDFSTEKNIVMWNAMLYGFVQNDLQEETIQMFQYMRRADLEAD 427

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
                 ++  C  +  L++GRQ+H + I + S +  +FV+ A+LD+YSK     +A  +F
Sbjct: 428 DFTFVSVLGACINLDSLDIGRQVHCITIKN-SMDADLFVANAMLDMYSKLGAIDVAKALF 486

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
             +  ++ VSW A+I G   ++  +  + + + M+  G+ P  V+    + AC+ +R   
Sbjct: 487 SLIPGKDSVSWNALIVGLAHNEEEEEAVYMLKRMKCYGIAPDEVSFATAINACSNIRATE 546

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
            GK IH  +       +H + ++L+ +Y +  + +  +R +        +V  +++I G 
Sbjct: 547 TGKQIHCASIKYNVCSNHAVGSSLIDLYSKFGD-VESSRKVLAHVDASSMVPINALITGL 605

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG-LNFD 367
            Q+    EA++LF ++  +  +P++ T  +ILS CT       G  VH Y +K+  LN D
Sbjct: 606 VQNNREDEAIELFQQVLKDGFKPSNFTFASILSGCTGPVSSVIGKQVHSYTLKSALLNQD 665

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAA-RDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
            S+G +L+ +Y KC  +  ++++  E+   ++ V WT  ISGY  +GY +++L +F  M+
Sbjct: 666 TSLGISLVGIYLKCKLLEDANKLLAEVPDHKNLVEWTATISGYAQNGYSDQSLVMFWRMR 725

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
              V  D  T  ++L AC+    + + + +   ++K   ++      A  +D+  K G +
Sbjct: 726 SHDVRSDEATFASVLKACSEIAALTDGKEIHGLIIKSGFVSYETAASA-LMDMYSKCGDV 784

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE--PENAANYTLLSM 544
             + ++   +  K +    +S++     +G    A +L  ++ E++  P+      +L +
Sbjct: 785 ISSFEIFKELKNKQNIMPWNSMIVGFAKNGYANEALLLFQKMQESQLKPDEVTLLGVL-I 843

Query: 545 VCSESG 550
            CS +G
Sbjct: 844 ACSHAG 849



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 136/533 (25%), Positives = 247/533 (46%), Gaps = 65/533 (12%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEM 89
           L  V+ AC+     +  G Q+HC  LKSG  +       L+ MYAK  + + A ++FD +
Sbjct: 163 LAVVLSACSRLGALEQ-GRQVHCDVLKSGFCSSAFCQAGLVDMYAKCVEVKDARRVFDGI 221

Query: 90  PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGR 149
              DTI W S+I  + + G Y ++L +F  M   G          IIS  + +G L   R
Sbjct: 222 ACPDTICWASMIAGYHRVGRYQQALALFSRMEKMGSAPDQVTYVTIISTLASMGRLSDAR 281

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
            +                                     +++ + + V+W A+IS    S
Sbjct: 282 TL------------------------------------LKRIQMPSTVAWNAVISSYSQS 305

Query: 210 QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS 269
                   L++ M+R+G+ PTR T   +L A A +     G+ IH  A   G D +  + 
Sbjct: 306 GLESEVFGLYKDMKRQGLMPTRSTFASMLSAAASMTAFDEGQQIHAAAVKHGLDANVFVG 365

Query: 270 AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
           ++L+++Y +    +  A+ +F+ +  K++V+W++++ G+ Q+    E +++F  MR   +
Sbjct: 366 SSLINLYVK-HGCISDAKKVFDFSTEKNIVMWNAMLYGFVQNDLQEETIQMFQYMRRADL 424

Query: 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
           E +  T +++L +C     L  G  VHC  +K  ++ D+ + NA+++MYSK G+I  +  
Sbjct: 425 EADDFTFVSVLGACINLDSLDIGRQVHCITIKNSMDADLFVANAMLDMYSKLGAIDVAKA 484

Query: 390 IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL 449
           +F+ +  +D VSW  LI G   +   EEA+ +   M+  G+ PD ++    ++AC++   
Sbjct: 485 LFSLIPGKDSVSWNALIVGLAHNEEEEEAVYMLKRMKCYGIAPDEVSFATAINACSN--- 541

Query: 450 VKEAETLFNNVMKEKKIALA-IEHYAC--------YVDLLGKSGKIEDACKV---VSTMP 497
           ++  ET        K+I  A I++  C         +DL  K G +E + KV   V    
Sbjct: 542 IRATET-------GKQIHCASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVLAHVDASS 594

Query: 498 MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESG 550
           M P   +++ LV   R    +E+      Q +  +    +N+T  S++   +G
Sbjct: 595 MVPINALITGLVQNNREDEAIEL-----FQQVLKDGFKPSNFTFASILSGCTG 642



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 138/548 (25%), Positives = 245/548 (44%), Gaps = 80/548 (14%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYA---------QTHQHFGLQ-LHCTALKSGSDADPVIS 66
           ELHP+  Y+  A+L S+ + C +A         +THQ      LH   L+ G      + 
Sbjct: 37  ELHPTAYYA--ALLGSLSRECRHAHHPFDATPHRTHQARACGVLHARVLRLGLPLRGRLG 94

Query: 67  NSLISMYAKFSKPESAYQLFD--EMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC- 123
           ++L+ +Y +  +   A++             + +S+++C  ++G     L+ F+ +    
Sbjct: 95  DALVDLYGRSGRVGYAWRALGCCTGAPASGAAASSVLSCHARSGSPRDVLDAFQRLRCSI 154

Query: 124 GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
           G       LA ++S CS++G LE GRQ+H  V+  G F  S F    L+D+Y+KC     
Sbjct: 155 GGTPDQFGLAVVLSACSRLGALEQGRQVHCDVLKSG-FCSSAFCQAGLVDMYAKCVEVKD 213

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
           A RVF+ +   + + W +MI+G      Y   + LF  M++ G  P +VT   ++   A 
Sbjct: 214 ARRVFDGIACPDTICWASMIAGYHRVGRYQQALALFSRMEKMGSAPDQVTYVTIISTLAS 273

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
           +  L +                                    AR + +R ++   V W++
Sbjct: 274 MGRLSD------------------------------------ARTLLKRIQMPSTVAWNA 297

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           +I  YSQSG  SE   L+  M+ + + P   T  ++LS+    +    G  +H   +K G
Sbjct: 298 VISSYSQSGLESEVFGLYKDMKRQGLMPTRSTFASMLSAAASMTAFDEGQQIHAAAVKHG 357

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
           L+ +V +G++L+N+Y K G I+ + ++F+    ++ V W  ++ G+  +   EE +Q+F 
Sbjct: 358 LDANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAMLYGFVQNDLQEETIQMFQ 417

Query: 424 EMQESGVEPDAITVLAILSACNH-----AGLVKEAETLFNNVMKEKKIALAIEHYACYVD 478
            M+ + +E D  T +++L AC +      G      T+ N++  +  +A A+      +D
Sbjct: 418 YMRRADLEADDFTFVSVLGACINLDSLDIGRQVHCITIKNSMDADLFVANAM------LD 471

Query: 479 LLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAAN 538
           +  K G I+ A  + S +P K S    + +V              LAH     E E  A 
Sbjct: 472 MYSKLGAIDVAKALFSLIPGKDSVSWNALIVG-------------LAHN----EEEEEAV 514

Query: 539 YTLLSMVC 546
           Y L  M C
Sbjct: 515 YMLKRMKC 522


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 178/532 (33%), Positives = 291/532 (54%), Gaps = 5/532 (0%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFD--EMPYRDTISWNSIINCFTQ 106
           Q+H   + +   + P + N+LI++YAK      A  LF      ++  ++W S+I   + 
Sbjct: 163 QIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHHHFKTIVTWTSLITHLSH 222

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
              ++++L +F +M   G        + I+S  +    +  G+Q+H+L+   G F+ ++F
Sbjct: 223 FNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHG-FDANIF 281

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           V TAL+D+Y+KC     A+RVF+QM  RN VSW +MI G   +  YD  + +F+ + RE 
Sbjct: 282 VGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREK 341

Query: 227 -VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
            V P  V+++ VL ACA +  L  G+ +HG     G     ++  +LM MY +C      
Sbjct: 342 TVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLMDMYFKC-RFFDE 400

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
              +F+    +DVV W+ ++ G+ Q+    EA   F  MR E I P+  +   +L S   
Sbjct: 401 GVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSAS 460

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
            + L  G  +H  I+K G   ++ I  +L+ MY+KCGS+  ++Q+F  +   + +SWT +
Sbjct: 461 LAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAM 520

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           IS Y  HG   + ++LF  M   G+EP  +T + +LSAC+H G V+E    FN++ K   
Sbjct: 521 ISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHD 580

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
           +    EHYAC VDLLG++G +++A + + +MPMKP+  +  +L+ ACR +G L++    A
Sbjct: 581 MNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAA 640

Query: 526 HQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +L E EP N  NY LL+ +C+ SG    A EV R+M   G+ K  G S I+
Sbjct: 641 ERLFEMEPYNPGNYVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWID 692


>gi|413916018|gb|AFW55950.1| hypothetical protein ZEAMMB73_919937 [Zea mays]
          Length = 864

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 184/576 (31%), Positives = 308/576 (53%), Gaps = 4/576 (0%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V    Y + + L+ Q +   GL  +     S  ++CA A        QLH  A+K+   +
Sbjct: 228 VQNEQYTRGMELFVQ-MQRLGLGVSQPAYASAFRSCA-AMPCLSTARQLHAHAIKNVFSS 285

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D V+  +++ +YAK      A + F  +P+ +  + N+++    + G    ++++F+ M 
Sbjct: 286 DRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCNAMMVGLVRTGLGAEAMQLFQFMT 345

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
             G       L+G+ S C+++     G Q+H L +  G F++ V V  A+LDLY KC   
Sbjct: 346 RSGVGFDVISLSGVFSACAEVKGYFQGLQVHCLAVKSG-FDVDVCVRNAILDLYGKCKAL 404

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
           + A  VF++M  R+ VSW A+I+    ++ Y+  I     M R G++P   T   VL AC
Sbjct: 405 VEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAHLNEMLRSGMEPDDFTYGSVLKAC 464

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A L+ L  G  +HG A   G   D  +S+ ++ MYC+C  A+  A+ + +R   +++V W
Sbjct: 465 AGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCG-AITEAQKLHDRIGGQELVSW 523

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           +SII G+S +    EA + FS M    ++P+  T   +L +C   + +  G  +H  I+K
Sbjct: 524 NSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTYATVLDTCANLATIELGKQIHGQIIK 583

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
             +  D  I + L++MY+KCG++  S  +F +    DFVSW  +I GY  HG G EAL++
Sbjct: 584 QEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKARKLDFVSWNAMICGYALHGQGLEALEM 643

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
           F  MQ + V P+  T +A+L AC+H GL+ +    F+ +    K+   +EH+AC VD+LG
Sbjct: 644 FERMQRANVVPNHATFVAVLRACSHVGLLDDGCQYFHLMTSRYKLVPQLEHFACMVDILG 703

Query: 482 KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTL 541
           +S   ++A + + +MP++    +  +L+S C+I   +EVAE  A  ++  +P++A+ Y L
Sbjct: 704 RSKGPQEALEFIRSMPIEADAVVWKTLLSICKIRQDVEVAETAASNVLRLDPDDASVYIL 763

Query: 542 LSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           LS V + SG W+      R+MR   L K  G S IE
Sbjct: 764 LSNVYAGSGKWVDVSRTRRLMRQGRLRKEPGCSWIE 799



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 147/542 (27%), Positives = 263/542 (48%), Gaps = 20/542 (3%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           E+   G+  +   L  ++K+C         G+Q+H  A+K+G + D    ++L+ MY K 
Sbjct: 141 EMSRRGVALDRTTLAVLLKSCG-GLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGKC 199

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
              + A + F  M  R+++SW + I    QN  Y R +E+F +M   G  +     A   
Sbjct: 200 RSLDDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYASAF 259

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
             C+ +  L   RQ+HA  I +  F     V TA++D+Y+K  + + A R F  +   N 
Sbjct: 260 RSCAAMPCLSTARQLHAHAIKN-VFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNV 318

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
            +  AM+ G + +      + LF+ M R GV    ++L+ V  ACAE++    G  +H  
Sbjct: 319 ETCNAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQVHCL 378

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
           A   GFD D  +  A++ +Y +C +AL  A ++F+  + +D V W++II    Q+    +
Sbjct: 379 AVKSGFDVDVCVRNAILDLYGKC-KALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYED 437

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
            +   + M    +EP+  T  ++L +C     L +GL VH   +K+GL  D  + + +++
Sbjct: 438 TIAHLNEMLRSGMEPDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVD 497

Query: 377 MYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAIT 436
           MY KCG+IT + ++ + +  ++ VSW ++ISG+      EEA + F EM + GV+PD  T
Sbjct: 498 MYCKCGAITEAQKLHDRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHFT 557

Query: 437 VLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDACKVVS 494
              +L  C +   ++  + +   ++K++ +    + Y  +  VD+  K G + D      
Sbjct: 558 YATVLDTCANLATIELGKQIHGQIIKQEMLG---DEYISSTLVDMYAKCGNMPD------ 608

Query: 495 TMPMKPSTRIL-----SSLVSACRIHGR-LEVAEMLAHQLIEAEPENAANYTLLSMVCSE 548
           ++ M    R L     ++++    +HG+ LE  EM           N A +  +   CS 
Sbjct: 609 SLLMFEKARKLDFVSWNAMICGYALHGQGLEALEMFERMQRANVVPNHATFVAVLRACSH 668

Query: 549 SG 550
            G
Sbjct: 669 VG 670



 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 137/433 (31%), Positives = 223/433 (51%), Gaps = 7/433 (1%)

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D V  N++++ Y      ++A  LF  MP  D +SWN++I+ + Q+G +  S+ +  EM 
Sbjct: 84  DTVSWNTMLTAYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMS 143

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
             G  L    LA ++  C  + +L LG QIHAL +  G  E  V   +AL+D+Y KC   
Sbjct: 144 RRGVALDRTTLAVLLKSCGGLDDLALGVQIHALAVKTG-LETDVRAGSALVDMYGKCRSL 202

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             ALR F  M  RN VSW A I+GC+ ++ Y  G++LF  MQR G+  ++        +C
Sbjct: 203 DDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYASAFRSC 262

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A +  L   + +H +A    F  D  +  A++ +Y +    L  AR  F      +V   
Sbjct: 263 AAMPCLSTARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGN-LVDARRAFIGLPHHNVETC 321

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           ++++ G  ++G  +EAM+LF  M    +  + ++L  + S+C        GL VHC  +K
Sbjct: 322 NAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQVHCLAVK 381

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
           +G + DV + NA++++Y KC ++  ++ +F EM  RD VSW  +I+    +   E+ +  
Sbjct: 382 SGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAH 441

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDL 479
             EM  SG+EPD  T  ++L AC  AGL      L  +  K  K  L ++ +  +  VD+
Sbjct: 442 LNEMLRSGMEPDDFTYGSVLKAC--AGLQSLEYGLVVH-GKAIKSGLGLDAFVSSTVVDM 498

Query: 480 LGKSGKIEDACKV 492
             K G I +A K+
Sbjct: 499 YCKCGAITEAQKL 511



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/354 (27%), Positives = 158/354 (44%), Gaps = 36/354 (10%)

Query: 124 GFVLKAELLAGIISLCSQIGE--LELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
           GFV  A   + +  LC+  G   L  G+  HA ++V G F  + FVS  LL +Y++C   
Sbjct: 13  GFVATATF-SHLYQLCASAGRSALTTGQAAHARMLVSG-FMPTTFVSNCLLQMYARCGGT 70

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRA-------------------- 221
             A  VF+ M  R+ VSW  M++  + + + DT   LF                      
Sbjct: 71  AHAHGVFDTMPHRDTVSWNTMLTAYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHG 130

Query: 222 -----------MQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSA 270
                      M R GV   R TL ++L +C  L DL  G  IH  A   G + D    +
Sbjct: 131 MFRNSVGLSMEMSRRGVALDRTTLAVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGS 190

Query: 271 ALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE 330
           AL+ MY +C  +L  A   F     ++ V W + I G  Q+   +  M+LF +M+   + 
Sbjct: 191 ALVDMYGKC-RSLDDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLG 249

Query: 331 PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQI 390
            +     +   SC     LS    +H + +K   + D  +G A++++Y+K G++  + + 
Sbjct: 250 VSQPAYASAFRSCAAMPCLSTARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRA 309

Query: 391 FNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
           F  +   +  +   ++ G    G G EA+QLF  M  SGV  D I++  + SAC
Sbjct: 310 FIGLPHHNVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSAC 363



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 122/296 (41%), Gaps = 43/296 (14%)

Query: 238 LLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKD 297
           L A A    L  G+A H      GF     +S  L+ MY  C    H A  +F+    +D
Sbjct: 26  LCASAGRSALTTGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTAH-AHGVFDTMPHRD 84

Query: 298 VVIWSSIIRGYSQSGDLSEAMKLFS-----------------------------RMRLER 328
            V W++++  Y  +GD   A  LF                               M + R
Sbjct: 85  TVSWNTMLTAYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSR 144

Query: 329 --IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITS 386
             +  +  TL  +L SC     L+ G+ +H   +K GL  DV  G+AL++MY KC S+  
Sbjct: 145 RGVALDRTTLAVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLDD 204

Query: 387 SHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH 446
           + + F+ M  R+ VSW   I+G   +      ++LF++MQ  G+        +   +C  
Sbjct: 205 ALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYASAFRSCAA 264

Query: 447 AGLVKEAETLFNNVMK-----EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
              +  A  L  + +K     ++ +  AI      VD+  K+G + DA +    +P
Sbjct: 265 MPCLSTARQLHAHAIKNVFSSDRVVGTAI------VDVYAKAGNLVDARRAFIGLP 314


>gi|357116106|ref|XP_003559825.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial-like [Brachypodium distachyon]
          Length = 739

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 180/535 (33%), Positives = 298/535 (55%), Gaps = 13/535 (2%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           QLH  A +SG  AD  + N+L++ Y++ +   +A ++FDEMP RD +SWN++I    Q+G
Sbjct: 161 QLHALASRSGLVADVFVGNALVTAYSRGALLGAARRVFDEMPARDLVSWNAMICGLAQDG 220

Query: 109 FYVRS--LEMFREMYLCGFVLKAELLA--GIISLCSQIGELELGRQIHALVIVDGSFELS 164
                  L   R +   G  ++ + ++   +I  C   G++ELGRQ+H+  +  G  E  
Sbjct: 221 DCPTEVILVFLRLLKDGGAAVRPDRISVCSVIPACGSEGKIELGRQVHSFTVKLG-VEGK 279

Query: 165 VFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR 224
           V +   L+ +Y K      A ++ + M  R+ +SWT  IS  +D +  +  I+LF  M++
Sbjct: 280 VSIGNVLVAMYYKSGAAGCARKLLKSMDERDVISWTTAIS--MDGE--EDAIELFNGMRQ 335

Query: 225 EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
           +GV P  VT   ++ A A     R G+ IH      G   +   + +L+ MY +    + 
Sbjct: 336 DGVPPNEVTFVALMSALAAGCPARYGQMIHTVCLKTGVSDEAAAANSLITMYAKLRR-MD 394

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
            AR +F+R    +++ W+++I GY+Q+   +EA+++FS M +  + PN  T  ++LS+ T
Sbjct: 395 DARTVFDRMPRPEIIAWNALISGYAQNELCNEALQVFSCM-VRCLRPNETTFASVLSAVT 453

Query: 345 RQSFLSHGLG--VHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSW 402
               +S   G   HC  +K GL     +  AL++MY+K GS+  S + F+    R  ++W
Sbjct: 454 AVETVSMAYGEMYHCQSLKLGLKVSEYVSGALIDMYAKRGSLEESRKAFDVTVHRSLIAW 513

Query: 403 TTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462
           T +IS +  HG  +  + LF +M  SGV PD + +L++L+AC H+G V     +F+++  
Sbjct: 514 TAIISAHAKHGNYDTVMNLFDDMVCSGVAPDGVVLLSVLTACRHSGAVNTGREIFDSMPA 573

Query: 463 EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAE 522
           E  +    EHYAC +D+LG++G++E+A +++  MP  PS   L SL+ ACRIHG   +AE
Sbjct: 574 EHHVEPWPEHYACVIDMLGRAGRLEEAEELMLQMPTGPSVSALQSLLGACRIHGNTSIAE 633

Query: 523 MLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +A  L E EP  +  Y LLS + +E G+W G  +V R MR KG+ K  GFS ++
Sbjct: 634 RVAGILTETEPTESGAYVLLSNIYAEKGDWGGVAKVRREMREKGVRKEIGFSWVD 688



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 153/552 (27%), Positives = 259/552 (46%), Gaps = 35/552 (6%)

Query: 27  TAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK-FSKPESAYQL 85
           TA +PS + A   A         LH  A+ SG DA   ++NSL + YAK  S   SA ++
Sbjct: 45  TAAVPSSVPANLPA---------LHGLAIASGLDAFSFVTNSLAARYAKSASSFPSAAKV 95

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK-AELLAGIISLCSQIGE 144
           F     RD  S+N+I++     G    +L     M   G V   A  L   +SL +  GE
Sbjct: 96  FHTARARDVSSYNTILSALPDRG---EALAFAAWMLRSGDVRPDAVTLTVALSLAASRGE 152

Query: 145 LE---LGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
            +   + RQ+HAL    G     VFV  AL+  YS+      A RVF++M  R+ VSW A
Sbjct: 153 ADGVWIVRQLHALASRSG-LVADVFVGNALVTAYSRGALLGAARRVFDEMPARDLVSWNA 211

Query: 202 MISGCIDSQNYDTGIDL-FRAMQREG---VKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
           MI G     +  T + L F  + ++G   V+P R+++  V+ AC     +  G+ +H + 
Sbjct: 212 MICGLAQDGDCPTEVILVFLRLLKDGGAAVRPDRISVCSVIPACGSEGKIELGRQVHSFT 271

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
              G +    +   L+ MY + + A   AR + +    +DV+ W++ I   S  G+  +A
Sbjct: 272 VKLGVEGKVSIGNVLVAMYYK-SGAAGCARKLLKSMDERDVISWTTAI---SMDGE-EDA 326

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
           ++LF+ MR + + PN VT +A++S+        +G  +H   +K G++ + +  N+L+ M
Sbjct: 327 IELFNGMRQDGVPPNEVTFVALMSALAAGCPARYGQMIHTVCLKTGVSDEAAAANSLITM 386

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           Y+K   +  +  +F+ M   + ++W  LISGY  +    EALQ+F  M    + P+  T 
Sbjct: 387 YAKLRRMDDARTVFDRMPRPEIIAWNALISGYAQNELCNEALQVFSCMVRC-LRPNETTF 445

Query: 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDACKVVST 495
            ++LSA      V  A     +  +  K+ L +  Y     +D+  K G +E++ K    
Sbjct: 446 ASVLSAVTAVETVSMAYGEMYHC-QSLKLGLKVSEYVSGALIDMYAKRGSLEESRKAFDV 504

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLI--EAEPENAANYTLLSMVCSESGNWL 553
              + S    ++++SA   HG  +    L   ++     P+     ++L+  C  SG   
Sbjct: 505 TVHR-SLIAWTAIISAHAKHGNYDTVMNLFDDMVCSGVAPDGVVLLSVLT-ACRHSGAVN 562

Query: 554 GAEEVWRVMRAK 565
              E++  M A+
Sbjct: 563 TGREIFDSMPAE 574



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 134/284 (47%), Gaps = 23/284 (8%)

Query: 2   VSKHFYEQTLHLY---KQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSG 58
           +S    E  + L+   +Q+  P    +  A++ ++   C        +G  +H   LK+G
Sbjct: 318 ISMDGEEDAIELFNGMRQDGVPPNEVTFVALMSALAAGCP-----ARYGQMIHTVCLKTG 372

Query: 59  SDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFR 118
              +   +NSLI+MYAK  + + A  +FD MP  + I+WN++I+ + QN     +L++F 
Sbjct: 373 VSDEAAAANSLITMYAKLRRMDDARTVFDRMPRPEIIAWNALISGYAQNELCNEALQVFS 432

Query: 119 EMYLCGFVLKAELLAGIISLCSQIGELEL--GRQIHALVIVDGSFELSVFVSTALLDLYS 176
            M  C         A ++S  + +  + +  G   H   +  G  ++S +VS AL+D+Y+
Sbjct: 433 CMVRC-LRPNETTFASVLSAVTAVETVSMAYGEMYHCQSLKLG-LKVSEYVSGALIDMYA 490

Query: 177 KCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTI 236
           K      + + F+  V R+ ++WTA+IS      NYDT ++LF  M   GV P  V L  
Sbjct: 491 KRGSLEESRKAFDVTVHRSLIAWTAIISAHAKHGNYDTVMNLFDDMVCSGVAPDGVVLLS 550

Query: 237 VLLACAELRDLRNGKAIHGYAYCCGFD---FDHHLSAALMHMYC 277
           VL AC     +  G+ I        FD    +HH+     H  C
Sbjct: 551 VLTACRHSGAVNTGREI--------FDSMPAEHHVEPWPEHYAC 586


>gi|297804022|ref|XP_002869895.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315731|gb|EFH46154.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 853

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 184/553 (33%), Positives = 309/553 (55%), Gaps = 4/553 (0%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           N      V+  CA ++     G+QLH   + SG D +  I NSL+SMY+K  + + A +L
Sbjct: 234 NAVTFDCVLSVCA-SKLLIDLGVQLHGLVVVSGLDFEGSIKNSLLSMYSKCGRFDDAIKL 292

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL 145
           F  M   DT++WN +I+ + Q+G    SL  F EM   G +  A   + ++   S+   L
Sbjct: 293 FRMMSRADTVTWNCMISGYVQSGLMEESLIFFYEMISSGVLPDAITFSSLLPSVSKFENL 352

Query: 146 ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISG 205
           E  RQIH   I+  S  L +F+++AL+D Y KC    +A ++F Q    + V +TAMISG
Sbjct: 353 EYCRQIHCY-IMRHSISLDIFLTSALIDAYFKCRGVSMAQKIFSQCNSVDVVVFTAMISG 411

Query: 206 CIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFD 265
            + +      +++FR + +  + P  +TL  +L     L  L+ G+ +HG+    GFD  
Sbjct: 412 YLHNGLNIDALEMFRWLVKVKISPNEITLVSILPVIGGLLALKLGRELHGFIIKKGFDNR 471

Query: 266 HHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR 325
            ++  A++ MY +C   ++ A  IF R   +D+V W+S+I   +QS + S A+ +F +M 
Sbjct: 472 CNIGCAVIDMYAKCGR-MNLAYEIFGRLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMG 530

Query: 326 LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSIT 385
           +  I  + V++ A LS+C      S G  +H +++K  L  DV   + L++MY+KCG++ 
Sbjct: 531 VSGICFDCVSISAALSACANLPSESFGKAIHGFMIKHSLALDVYSESTLIDMYAKCGNLK 590

Query: 386 SSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE-SGVEPDAITVLAILSAC 444
           ++  +F+ M  ++ VSW ++I+ YG HG  +++L LF EM E SG  PD IT L I+S C
Sbjct: 591 AAMNVFDTMKEKNIVSWNSIIAAYGNHGKLKDSLCLFHEMVEKSGNRPDQITFLEIISLC 650

Query: 445 NHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRI 504
            H G V E    F ++ ++  I    EHYAC VDL G++G++ +A + V +MP  P   +
Sbjct: 651 CHVGDVDEGVRFFRSMTQDYGIQPQQEHYACVVDLFGRAGRLSEAYETVKSMPFPPDAGV 710

Query: 505 LSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRA 564
             +L+ A R+H  +E+A++ + +L++ +P N+  Y L+S   + +G W    +V  +M+ 
Sbjct: 711 WGTLLGASRLHKNVELAKVASSRLMDLDPWNSGYYVLISNAHANTGEWESVTKVRSLMKE 770

Query: 565 KGLSKSYGFSRIE 577
           + + K  G+S IE
Sbjct: 771 REVQKIPGYSWIE 783



 Score =  224 bits (571), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 156/564 (27%), Positives = 289/564 (51%), Gaps = 18/564 (3%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKS-GSDADPVISNSLISMYAKFSKPE 80
           G+  + +  P ++KAC   +  +  G++     + S G D +  +++SLI  Y ++ K +
Sbjct: 129 GVSPDVSTFPCLVKACVALKNFK--GIEFLSDTVSSLGMDCNEFVASSLIKAYLEYGKID 186

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
            A +LFD +  +D + WN ++N + + G     ++ F  M +      A     ++S+C+
Sbjct: 187 VAGKLFDRVLQKDCVIWNVMLNGYAKCGASDSVIKGFSLMRMDQISPNAVTFDCVLSVCA 246

Query: 141 QIGELELGRQIHALVIVDG-SFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSW 199
               ++LG Q+H LV+V G  FE S  +  +LL +YSKC  +  A+++F  M   + V+W
Sbjct: 247 SKLLIDLGVQLHGLVVVSGLDFEGS--IKNSLLSMYSKCGRFDDAIKLFRMMSRADTVTW 304

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
             MISG + S   +  +  F  M   GV P  +T + +L + ++  +L   + IH Y   
Sbjct: 305 NCMISGYVQSGLMEESLIFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCRQIHCYIMR 364

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
                D  L++AL+  Y +C   +  A+ IF +    DVV+++++I GY  +G   +A++
Sbjct: 365 HSISLDIFLTSALIDAYFKC-RGVSMAQKIFSQCNSVDVVVFTAMISGYLHNGLNIDALE 423

Query: 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           +F  +   +I PN +TL++IL        L  G  +H +I+K G +   +IG A+++MY+
Sbjct: 424 MFRWLVKVKISPNEITLVSILPVIGGLLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYA 483

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           KCG +  +++IF  ++ RD VSW ++I+          A+ +F +M  SG+  D +++ A
Sbjct: 484 KCGRMNLAYEIFGRLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICFDCVSISA 543

Query: 440 ILSACNHAGLVKEA-ETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPM 498
            LSAC  A L  E+     +  M +  +AL +   +  +D+  K G ++ A  V  TM  
Sbjct: 544 ALSAC--ANLPSESFGKAIHGFMIKHSLALDVYSESTLIDMYAKCGNLKAAMNVFDTMKE 601

Query: 499 KPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV--CSESGNWLGAE 556
           K +    +S+++A   HG+L+ +  L H+++E         T L ++  C   G+    +
Sbjct: 602 K-NIVSWNSIIAAYGNHGKLKDSLCLFHEMVEKSGNRPDQITFLEIISLCCHVGD---VD 657

Query: 557 EVWRVMRAKGLSKSYGFSRIENEY 580
           E  R  R+  +++ YG    +  Y
Sbjct: 658 EGVRFFRS--MTQDYGIQPQQEHY 679



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 103/419 (24%), Positives = 202/419 (48%), Gaps = 4/419 (0%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYR--DTISWNSIINCF 104
           G Q+H   + +    D      ++ MYA      +  ++F  +  R      WNSII+ F
Sbjct: 50  GKQVHAFVIVNRISGDSYTDERILGMYAMCGSFSNCGKMFYRLDSRLSSIRPWNSIISSF 109

Query: 105 TQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELS 164
            + G   ++L  + +M   G          ++  C  +   + G +  +  +     + +
Sbjct: 110 VRMGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFK-GIEFLSDTVSSLGMDCN 168

Query: 165 VFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR 224
            FV+++L+  Y +     +A ++F++++ ++ V W  M++G       D+ I  F  M+ 
Sbjct: 169 EFVASSLIKAYLEYGKIDVAGKLFDRVLQKDCVIWNVMLNGYAKCGASDSVIKGFSLMRM 228

Query: 225 EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
           + + P  VT   VL  CA    +  G  +HG     G DF+  +  +L+ MY +C     
Sbjct: 229 DQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGLDFEGSIKNSLLSMYSKCGR-FD 287

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
            A  +F      D V W+ +I GY QSG + E++  F  M    + P+++T  ++L S +
Sbjct: 288 DAIKLFRMMSRADTVTWNCMISGYVQSGLMEESLIFFYEMISSGVLPDAITFSSLLPSVS 347

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
           +   L +   +HCYIM+  ++ D+ + +AL++ Y KC  ++ + +IF++  + D V +T 
Sbjct: 348 KFENLEYCRQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQKIFSQCNSVDVVVFTA 407

Query: 405 LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKE 463
           +ISGY  +G   +AL++F  + +  + P+ IT+++IL        +K    L   ++K+
Sbjct: 408 MISGYLHNGLNIDALEMFRWLVKVKISPNEITLVSILPVIGGLLALKLGRELHGFIIKK 466



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/314 (30%), Positives = 169/314 (53%), Gaps = 4/314 (1%)

Query: 132 LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM 191
           L+ ++  CS +  L  G+Q+HA VIV+       +    +L +Y+ C  +    ++F ++
Sbjct: 34  LSLLLQDCSNLTLLRQGKQVHAFVIVN-RISGDSYTDERILGMYAMCGSFSNCGKMFYRL 92

Query: 192 VIR--NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
             R  +   W ++IS  +     +  +  +  M   GV P   T   ++ AC  L++ + 
Sbjct: 93  DSRLSSIRPWNSIISSFVRMGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKG 152

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
            + +       G D +  ++++L+  Y E  + +  A  +F+R   KD VIW+ ++ GY+
Sbjct: 153 IEFLSDTVSSLGMDCNEFVASSLIKAYLEYGK-IDVAGKLFDRVLQKDCVIWNVMLNGYA 211

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
           + G     +K FS MR+++I PN+VT   +LS C  +  +  G+ +H  ++ +GL+F+ S
Sbjct: 212 KCGASDSVIKGFSLMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGLDFEGS 271

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
           I N+L++MYSKCG    + ++F  M+  D V+W  +ISGY   G  EE+L  F EM  SG
Sbjct: 272 IKNSLLSMYSKCGRFDDAIKLFRMMSRADTVTWNCMISGYVQSGLMEESLIFFYEMISSG 331

Query: 430 VEPDAITVLAILSA 443
           V PDAIT  ++L +
Sbjct: 332 VLPDAITFSSLLPS 345


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 178/554 (32%), Positives = 297/554 (53%), Gaps = 7/554 (1%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           N   L +V+K CA ++  +  G  +H   +K G + +  I   L+ MY+K      A  +
Sbjct: 313 NEFTLTTVLKGCANSKNLKQ-GQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGV 371

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL 145
           F  +   D + W+++I C  Q G    S+++F  M L   +     +  ++S  +  G L
Sbjct: 372 FKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNL 431

Query: 146 ELGRQIHALVIVDGSFELSVFVSTALLDLYSK--CHHWLIALRVFEQMVIRNEVSWTAMI 203
           + G+ IHA V   G FE  V VS AL+ +Y K  C H     +++E MV R+ +SW A +
Sbjct: 432 QYGQSIHACVWKYG-FETDVAVSNALVTMYMKNGCVH--DGTKLYESMVDRDLISWNAYL 488

Query: 204 SGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFD 263
           SG  D   YD  + +F  M  EG  P   T   +L +C+ L D+  G+ +H +      D
Sbjct: 489 SGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLD 548

Query: 264 FDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSR 323
            ++ +  AL+ MY +C   L  A + F R  V+D+  W+ II  Y+Q+    +A+  F +
Sbjct: 549 DNNFVCTALIDMYAKCM-YLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQ 607

Query: 324 MRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS 383
           M+ E ++PN  TL   LS C+  + L  G  +H  + K+G   D+ +G+AL++MY+KCG 
Sbjct: 608 MQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGC 667

Query: 384 ITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
           +  +  +F  +  RD ++W T+I GY  +G G +AL  F  M + G+ PD +T   ILSA
Sbjct: 668 MEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSA 727

Query: 444 CNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTR 503
           C+H GLV+E +  FN++ ++  I+  ++H AC VD+LG+ GK ++    +  M +  +  
Sbjct: 728 CSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNAL 787

Query: 504 ILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMR 563
           I  +++ A ++H  L + E  A++L E +PE  ++Y LLS + +  G W   + V  +M 
Sbjct: 788 IWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMS 847

Query: 564 AKGLSKSYGFSRIE 577
           +KG+ K  G S +E
Sbjct: 848 SKGVKKEPGCSWVE 861



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 138/442 (31%), Positives = 226/442 (51%), Gaps = 7/442 (1%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           +H   +K   + D  +  SL+++YAK      A  +  +MP RD +SW ++I      GF
Sbjct: 134 IHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGF 193

Query: 110 YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVST 169
              S+ +F+EM   G +     LA  +  CS    L+LG+Q+HA     G   L +FV +
Sbjct: 194 ANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLL-LDLFVGS 252

Query: 170 ALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKP 229
           AL+DLY+KC    +A ++F  M  +N+V+W  +++G     +    + LF +M    VK 
Sbjct: 253 ALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKC 312

Query: 230 TRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARII 289
              TLT VL  CA  ++L+ G+ IH     CG++ +  +   L+ MY +C  A+  A  +
Sbjct: 313 NEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAI-DAIGV 371

Query: 290 FERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFL 349
           F+  K  D+V+WS++I    Q G   E++KLF  MRL    PN  T+ ++LS+ T    L
Sbjct: 372 FKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNL 431

Query: 350 SHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGY 409
            +G  +H  + K G   DV++ NAL+ MY K G +    +++  M  RD +SW   +SG 
Sbjct: 432 QYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGL 491

Query: 410 GFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA 469
              G  +  L +F  M E G  P+  T ++IL +C+    V     +  +++K +   L 
Sbjct: 492 HDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQ---LD 548

Query: 470 IEHYAC--YVDLLGKSGKIEDA 489
             ++ C   +D+  K   +EDA
Sbjct: 549 DNNFVCTALIDMYAKCMYLEDA 570



 Score =  221 bits (563), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 142/490 (28%), Positives = 254/490 (51%), Gaps = 7/490 (1%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           +V++ F   +++L+ QE+   G+  N   L + +KAC+        G Q+H  A K G  
Sbjct: 188 LVAEGFANDSIYLF-QEMQNEGIMPNEFTLATGLKACSLCMALD-LGKQMHAQAFKLGLL 245

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
            D  + ++L+ +YAK  + E A ++F  MP ++ ++WN ++N + Q G     L++F  M
Sbjct: 246 LDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSM 305

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
                      L  ++  C+    L+ G+ IH+L+I  G +E + F+   L+D+YSKC  
Sbjct: 306 MELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCG-YEGNEFIGCGLVDMYSKCGL 364

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNY-DTGIDLFRAMQREGVKPTRVTLTIVLL 239
            + A+ VF+ +   + V W+A+I+ C+D Q   +  I LF  M+     P + T+  +L 
Sbjct: 365 AIDAIGVFKTIKKPDIVVWSALIT-CLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLS 423

Query: 240 ACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVV 299
           A     +L+ G++IH   +  GF+ D  +S AL+ MY +    +H    ++E    +D++
Sbjct: 424 AATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMK-NGCVHDGTKLYESMVDRDLI 482

Query: 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
            W++ + G    G     + +F  M  E   PN  T ++IL SC+    + +G  VH +I
Sbjct: 483 SWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHI 542

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEAL 419
           +K  L+ +  +  AL++MY+KC  +  +   FN ++ RD  +WT +I+ Y     GE+AL
Sbjct: 543 IKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKAL 602

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479
             F +MQ+ GV+P+  T+   LS C+    ++  + L + V K   ++      A  VD+
Sbjct: 603 NYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSA-LVDM 661

Query: 480 LGKSGKIEDA 489
             K G +E+A
Sbjct: 662 YAKCGCMEEA 671



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 107/372 (28%), Positives = 184/372 (49%), Gaps = 9/372 (2%)

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
           K +  + ++  C+    L + + IH L++ D        +  +L+++Y+KC +   A  V
Sbjct: 111 KLKYYSSMLRECASKRSLGVAKAIHGLIVKD-VINPDSHLWVSLVNVYAKCRYSAYARLV 169

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
             +M  R+ VSWTA+I G +     +  I LF+ MQ EG+ P   TL   L AC+    L
Sbjct: 170 LAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMAL 229

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
             GK +H  A+  G   D  + +AL+ +Y +C E    +++     +  DV  W+ ++ G
Sbjct: 230 DLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVT-WNVLLNG 288

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
           Y+Q GD++  +KLF  M    ++ N  TL  +L  C     L  G  +H  I+K G   +
Sbjct: 289 YAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGN 348

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
             IG  L++MYSKCG    +  +F  +   D V W+ LI+     G  EE+++LF  M+ 
Sbjct: 349 EFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRL 408

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLLGKSG 484
               P+  T+ ++LSA  + G ++  +++   V K   E  +A++       V +  K+G
Sbjct: 409 GDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVS----NALVTMYMKNG 464

Query: 485 KIEDACKVVSTM 496
            + D  K+  +M
Sbjct: 465 CVHDGTKLYESM 476



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 162/318 (50%), Gaps = 8/318 (2%)

Query: 237 VLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK 296
           +L  CA  R L   KAIHG       + D HL  +L+++Y +C  + + AR++  +   +
Sbjct: 118 MLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAY-ARLVLAKMPDR 176

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVH 356
           DVV W+++I+G    G  ++++ LF  M+ E I PN  TL   L +C+    L  G  +H
Sbjct: 177 DVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMH 236

Query: 357 CYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGE 416
               K GL  D+ +G+AL+++Y+KCG I  + ++F  M  ++ V+W  L++GY   G   
Sbjct: 237 AQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVT 296

Query: 417 EALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC- 475
             L+LF  M E  V+ +  T+  +L  C ++  +K+ + + + ++K        E   C 
Sbjct: 297 GVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCG--YEGNEFIGCG 354

Query: 476 YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAH--QLIEAEP 533
            VD+  K G   DA  V  T+  KP   + S+L++     G+ E +  L H  +L +  P
Sbjct: 355 LVDMYSKCGLAIDAIGVFKTIK-KPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLP 413

Query: 534 ENAANYTLLSMVCSESGN 551
                 +LLS   + +GN
Sbjct: 414 NQYTICSLLS-AATNTGN 430


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 178/554 (32%), Positives = 297/554 (53%), Gaps = 7/554 (1%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           N   L +V+K CA ++  +  G  +H   +K G + +  I   L+ MY+K      A  +
Sbjct: 313 NEFTLTTVLKGCANSKNLKQ-GQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGV 371

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL 145
           F  +   D + W+++I C  Q G    S+++F  M L   +     +  ++S  +  G L
Sbjct: 372 FKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNL 431

Query: 146 ELGRQIHALVIVDGSFELSVFVSTALLDLYSK--CHHWLIALRVFEQMVIRNEVSWTAMI 203
           + G+ IHA V   G FE  V VS AL+ +Y K  C H     +++E MV R+ +SW A +
Sbjct: 432 QYGQSIHACVWKYG-FETDVAVSNALVTMYMKNGCVH--DGTKLYESMVDRDLISWNAYL 488

Query: 204 SGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFD 263
           SG  D   YD  + +F  M  EG  P   T   +L +C+ L D+  G+ +H +      D
Sbjct: 489 SGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLD 548

Query: 264 FDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSR 323
            ++ +  AL+ MY +C   L  A + F R  V+D+  W+ II  Y+Q+    +A+  F +
Sbjct: 549 DNNFVCTALIDMYAKCM-YLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQ 607

Query: 324 MRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS 383
           M+ E ++PN  TL   LS C+  + L  G  +H  + K+G   D+ +G+AL++MY+KCG 
Sbjct: 608 MQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGC 667

Query: 384 ITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
           +  +  +F  +  RD ++W T+I GY  +G G +AL  F  M + G+ PD +T   ILSA
Sbjct: 668 MEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSA 727

Query: 444 CNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTR 503
           C+H GLV+E +  FN++ ++  I+  ++H AC VD+LG+ GK ++    +  M +  +  
Sbjct: 728 CSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNAL 787

Query: 504 ILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMR 563
           I  +++ A ++H  L + E  A++L E +PE  ++Y LLS + +  G W   + V  +M 
Sbjct: 788 IWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMS 847

Query: 564 AKGLSKSYGFSRIE 577
           +KG+ K  G S +E
Sbjct: 848 SKGVKKEPGCSWVE 861



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 138/442 (31%), Positives = 226/442 (51%), Gaps = 7/442 (1%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           +H   +K   + D  +  SL+++YAK      A  +  +MP RD +SW ++I      GF
Sbjct: 134 IHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGF 193

Query: 110 YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVST 169
              S+ +F+EM   G +     LA  +  CS    L+LG+Q+HA     G   L +FV +
Sbjct: 194 ANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLL-LDLFVGS 252

Query: 170 ALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKP 229
           AL+DLY+KC    +A ++F  M  +N+V+W  +++G     +    + LF +M    VK 
Sbjct: 253 ALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKC 312

Query: 230 TRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARII 289
              TLT VL  CA  ++L+ G+ IH     CG++ +  +   L+ MY +C  A+  A  +
Sbjct: 313 NEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAI-DAIGV 371

Query: 290 FERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFL 349
           F+  K  D+V+WS++I    Q G   E++KLF  MRL    PN  T+ ++LS+ T    L
Sbjct: 372 FKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNL 431

Query: 350 SHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGY 409
            +G  +H  + K G   DV++ NAL+ MY K G +    +++  M  RD +SW   +SG 
Sbjct: 432 QYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGL 491

Query: 410 GFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA 469
              G  +  L +F  M E G  P+  T ++IL +C+    V     +  +++K +   L 
Sbjct: 492 HDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQ---LD 548

Query: 470 IEHYAC--YVDLLGKSGKIEDA 489
             ++ C   +D+  K   +EDA
Sbjct: 549 DNNFVCTALIDMYAKCMYLEDA 570



 Score =  221 bits (563), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 142/490 (28%), Positives = 254/490 (51%), Gaps = 7/490 (1%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           +V++ F   +++L+ QE+   G+  N   L + +KAC+        G Q+H  A K G  
Sbjct: 188 LVAEGFANDSIYLF-QEMQNEGIMPNEFTLATGLKACSLCMALD-LGKQMHAQAFKLGLL 245

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
            D  + ++L+ +YAK  + E A ++F  MP ++ ++WN ++N + Q G     L++F  M
Sbjct: 246 LDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSM 305

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
                      L  ++  C+    L+ G+ IH+L+I  G +E + F+   L+D+YSKC  
Sbjct: 306 MELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCG-YEGNEFIGCGLVDMYSKCGL 364

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNY-DTGIDLFRAMQREGVKPTRVTLTIVLL 239
            + A+ VF+ +   + V W+A+I+ C+D Q   +  I LF  M+     P + T+  +L 
Sbjct: 365 AIDAIGVFKTIKKPDIVVWSALIT-CLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLS 423

Query: 240 ACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVV 299
           A     +L+ G++IH   +  GF+ D  +S AL+ MY +    +H    ++E    +D++
Sbjct: 424 AATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMK-NGCVHDGTKLYESMVDRDLI 482

Query: 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
            W++ + G    G     + +F  M  E   PN  T ++IL SC+    + +G  VH +I
Sbjct: 483 SWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHI 542

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEAL 419
           +K  L+ +  +  AL++MY+KC  +  +   FN ++ RD  +WT +I+ Y     GE+AL
Sbjct: 543 IKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKAL 602

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479
             F +MQ+ GV+P+  T+   LS C+    ++  + L + V K   ++      A  VD+
Sbjct: 603 NYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSA-LVDM 661

Query: 480 LGKSGKIEDA 489
             K G +E+A
Sbjct: 662 YAKCGCMEEA 671



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 107/372 (28%), Positives = 184/372 (49%), Gaps = 9/372 (2%)

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
           K +  + ++  C+    L + + IH L++ D        +  +L+++Y+KC +   A  V
Sbjct: 111 KLKYYSSMLRECASKRSLGVAKAIHGLIVKD-VINPDSHLWVSLVNVYAKCRYSAYARLV 169

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
             +M  R+ VSWTA+I G +     +  I LF+ MQ EG+ P   TL   L AC+    L
Sbjct: 170 LAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMAL 229

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
             GK +H  A+  G   D  + +AL+ +Y +C E    +++     +  DV  W+ ++ G
Sbjct: 230 DLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVT-WNVLLNG 288

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
           Y+Q GD++  +KLF  M    ++ N  TL  +L  C     L  G  +H  I+K G   +
Sbjct: 289 YAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGN 348

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
             IG  L++MYSKCG    +  +F  +   D V W+ LI+     G  EE+++LF  M+ 
Sbjct: 349 EFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRL 408

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLLGKSG 484
               P+  T+ ++LSA  + G ++  +++   V K   E  +A++       V +  K+G
Sbjct: 409 GDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVS----NALVTMYMKNG 464

Query: 485 KIEDACKVVSTM 496
            + D  K+  +M
Sbjct: 465 CVHDGTKLYESM 476



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 162/318 (50%), Gaps = 8/318 (2%)

Query: 237 VLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK 296
           +L  CA  R L   KAIHG       + D HL  +L+++Y +C  + + AR++  +   +
Sbjct: 118 MLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAY-ARLVLAKMPDR 176

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVH 356
           DVV W+++I+G    G  ++++ LF  M+ E I PN  TL   L +C+    L  G  +H
Sbjct: 177 DVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMH 236

Query: 357 CYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGE 416
               K GL  D+ +G+AL+++Y+KCG I  + ++F  M  ++ V+W  L++GY   G   
Sbjct: 237 AQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVT 296

Query: 417 EALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC- 475
             L+LF  M E  V+ +  T+  +L  C ++  +K+ + + + ++K        E   C 
Sbjct: 297 GVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCG--YEGNEFIGCG 354

Query: 476 YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAH--QLIEAEP 533
            VD+  K G   DA  V  T+  KP   + S+L++     G+ E +  L H  +L +  P
Sbjct: 355 LVDMYSKCGLAIDAIGVFKTIK-KPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLP 413

Query: 534 ENAANYTLLSMVCSESGN 551
                 +LLS   + +GN
Sbjct: 414 NQYTICSLLS-AATNTGN 430


>gi|326526571|dbj|BAJ97302.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 851

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 192/577 (33%), Positives = 318/577 (55%), Gaps = 11/577 (1%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
            + L L++  L   G   + A L +V+  CA A      G  +H  A KSG DA   + N
Sbjct: 151 RRGLELFRDCLVAVGGMVDEATLVTVLPMCA-ALGWSETGRAVHGLAAKSGWDAPARVGN 209

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC--GF 125
           +L+ MYAK  +   A + F E P    +SWN ++  +T+N     +  + R+M +   G 
Sbjct: 210 ALVDMYAKCGELADAERAFPEAP--SVVSWNVMLGAYTRNREAGAAFGLLRDMQIKEHGS 267

Query: 126 VLKAEL-LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
           V   E+ +  ++  CS   EL   R++HA  +  G    S  V  AL+  Y +C   L A
Sbjct: 268 VPADEITVLSVLPACSGPTELSRLRELHAFTVRRGLDAASDKVPNALVAAYGRCGRLLHA 327

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE-GVKPTRVTLTIVLLACAE 243
            RVF  +  +   SW  +IS     QN    I+LF  M    G+KP   ++  +L+ACA+
Sbjct: 328 DRVFTDIRRKTVSSWNTLISAHA-QQNTAAAIELFIQMTNACGLKPDGFSIGSLLMACAD 386

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
            + L + KA HG+    G + D  + A+L+  Y  C+   + AR++F+  + K  V+W +
Sbjct: 387 PKHLLHVKATHGFILRNGLERDTVIRASLLSAYIRCSRTEYLARVLFDAMEEKGEVLWIA 446

Query: 304 IIRGYSQSGDLSEAMKLFSRMR-LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
           +I GYSQ+G   E+++LF  M+ +E    + ++  + L +C+  S +  G  +HC+ +KA
Sbjct: 447 MISGYSQNGLPGESLQLFREMQSVEGHCSSVISATSALMACSELSSVRLGKEMHCFALKA 506

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDF-VSWTTLISGYGFHGYGEEALQL 421
            L  D  + ++L++MYSKCG +  +   F+ + ARD  VSWT +I+GY  +G G EA++L
Sbjct: 507 DLCDDPFLSSSLIDMYSKCGFVEDARTFFDRLKARDAKVSWTAMITGYAVNGLGREAVEL 566

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK-KIALAIEHYACYVDLL 480
           + +M+  G+EPD  T L +L AC HAG+++E    F+ +     KI + +EHY+C + +L
Sbjct: 567 YGKMRREGMEPDEFTYLGLLMACGHAGMLEEGLRFFDEMRNHHHKIEVKLEHYSCVIGML 626

Query: 481 GKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYT 540
            ++G+  DA  +++ MP +P  +ILSS++SAC IHG  E+   +A +L+E EP+ A +Y 
Sbjct: 627 SRAGRFADAVALMAEMPQEPDAKILSSVLSACHIHGEAELGSDVAERLLELEPDKAEHYV 686

Query: 541 LLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           L S + + S  W    +V +++R  G++K  G S I+
Sbjct: 687 LASNMYAGSRRWDDMRKVRKMLRDAGIAKEPGCSWID 723



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 141/543 (25%), Positives = 252/543 (46%), Gaps = 24/543 (4%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHF-GLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           G+  +   LP   ++C + +      G Q+H  A K G   DP + NSL+SMY +  + E
Sbjct: 61  GIAPDRFTLPPAARSCGFLRVGAAAAGRQVHALAAKLGLPGDPFVGNSLVSMYGRCGRVE 120

Query: 81  SAYQLFDEMP--YRDTISWNSIINCFTQNGFYVRSLEMFRE-MYLCGFVLKAELLAGIIS 137
            A ++F  +P   R+ +SWN+++   +  G   R LE+FR+ +   G ++    L  ++ 
Sbjct: 121 DAEKVFGGIPDAARNIVSWNALMAALS--GDPRRGLELFRDCLVAVGGMVDEATLVTVLP 178

Query: 138 LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197
           +C+ +G  E GR +H L    G ++    V  AL+D+Y+KC     A R F +    + V
Sbjct: 179 MCAALGWSETGRAVHGLAAKSG-WDAPARVGNALVDMYAKCGELADAERAFPEAP--SVV 235

Query: 198 SWTAMISGCIDSQNYDTGIDLFRAMQRE---GVKPTRVTLTIVLLACAELRDLRNGKAIH 254
           SW  M+     ++       L R MQ +    V    +T+  VL AC+   +L   + +H
Sbjct: 236 SWNVMLGAYTRNREAGAAFGLLRDMQIKEHGSVPADEITVLSVLPACSGPTELSRLRELH 295

Query: 255 GYAYCCGFD-FDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGD 313
            +    G D     +  AL+  Y  C   LH  R +F   + K V  W+++I  ++Q  +
Sbjct: 296 AFTVRRGLDAASDKVPNALVAAYGRCGRLLHADR-VFTDIRRKTVSSWNTLISAHAQQ-N 353

Query: 314 LSEAMKLFSRMRLE-RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN 372
            + A++LF +M     ++P+  ++ ++L +C     L H    H +I++ GL  D  I  
Sbjct: 354 TAAAIELFIQMTNACGLKPDGFSIGSLLMACADPKHLLHVKATHGFILRNGLERDTVIRA 413

Query: 373 ALMNMYSKCGSITS-SHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE-SGV 430
           +L++ Y +C      +  +F+ M  +  V W  +ISGY  +G   E+LQLF EMQ   G 
Sbjct: 414 SLLSAYIRCSRTEYLARVLFDAMEEKGEVLWIAMISGYSQNGLPGESLQLFREMQSVEGH 473

Query: 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIED 488
               I+  + L AC+    V+  + +    +K     L  + +  +  +D+  K G +ED
Sbjct: 474 CSSVISATSALMACSELSSVRLGKEMHCFALKAD---LCDDPFLSSSLIDMYSKCGFVED 530

Query: 489 ACKVVSTMPMKPSTRILSSLVSACRIHG-RLEVAEMLAHQLIEAEPENAANYTLLSMVCS 547
           A      +  + +    +++++   ++G   E  E+      E    +   Y  L M C 
Sbjct: 531 ARTFFDRLKARDAKVSWTAMITGYAVNGLGREAVELYGKMRREGMEPDEFTYLGLLMACG 590

Query: 548 ESG 550
            +G
Sbjct: 591 HAG 593



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 135/296 (45%), Gaps = 16/296 (5%)

Query: 225 EGVKPTRVTLTIVLLACAELR--DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEA 282
           EG+ P R TL     +C  LR      G+ +H  A   G   D  +  +L+ MY  C   
Sbjct: 60  EGIAPDRFTLPPAARSCGFLRVGAAAAGRQVHALAAKLGLPGDPFVGNSLVSMYGRCGR- 118

Query: 283 LHPARIIFE--RTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP--NSVTLLA 338
           +  A  +F       +++V W++++   + SGD    ++LF R  L  +    +  TL+ 
Sbjct: 119 VEDAEKVFGGIPDAARNIVSWNALM--AALSGDPRRGLELF-RDCLVAVGGMVDEATLVT 175

Query: 339 ILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARD 398
           +L  C    +   G  VH    K+G +    +GNAL++MY+KCG +  + + F E  A  
Sbjct: 176 VLPMCAALGWSETGRAVHGLAAKSGWDAPARVGNALVDMYAKCGELADAERAFPE--APS 233

Query: 399 FVSWTTLISGYGFHGYGEEALQLFLEMQ--ESGVEP-DAITVLAILSACNHAGLVKEAET 455
            VSW  ++  Y  +     A  L  +MQ  E G  P D ITVL++L AC+    +     
Sbjct: 234 VVSWNVMLGAYTRNREAGAAFGLLRDMQIKEHGSVPADEITVLSVLPACSGPTELSRLRE 293

Query: 456 LFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSA 511
           L    ++    A + +     V   G+ G++  A +V + +  K +    ++L+SA
Sbjct: 294 LHAFTVRRGLDAASDKVPNALVAAYGRCGRLLHADRVFTDIRRK-TVSSWNTLISA 348


>gi|359486457|ref|XP_002275344.2| PREDICTED: pentatricopeptide repeat-containing protein At2g40720
           [Vitis vinifera]
          Length = 836

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 186/576 (32%), Positives = 316/576 (54%), Gaps = 4/576 (0%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V    +E++L LY    + +     +A       AC++ +    FG Q+HC  +K     
Sbjct: 220 VENGMWEKSLELYSLAKNENCKLV-SASFTGAFTACSHGEVLD-FGRQVHCDVIKMNFQD 277

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           DP +  SL++MYAK    E A ++FD++  ++    N++I+ F  NG    +L ++ +M 
Sbjct: 278 DPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMK 337

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
                + +  ++ ++S CS +G  + GR +HA VI   S + +V + +ALL +Y KC   
Sbjct: 338 AGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVI-KRSMQSNVAIQSALLTMYYKCGST 396

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             A  VF  M  R+ V+W +MI+G   ++ +   +DLFRAM++EGVK     +T V+ A 
Sbjct: 397 EDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAG 456

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
             L ++  G  IHG+A   G + D  ++ +L+ MY +   A   A ++F     K++V W
Sbjct: 457 LGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFA-ESAEMVFSSMPNKNLVAW 515

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           +S+I  YS +G    ++ L  ++       +SV++  +L + +  + L  G  +H Y ++
Sbjct: 516 NSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIR 575

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
             +  D+ + NAL++MY KCG +  +  IF  M  R+ V+W ++I+GYG HG  EEA++L
Sbjct: 576 LQIPSDLQVENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSMIAGYGSHGNCEEAVRL 635

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
           F EM+ S   PD +T LA++++C+H+G+V+E   LF  +  E  +   +EHYA  VDLLG
Sbjct: 636 FKEMKRSETAPDEVTFLALITSCSHSGMVEEGLNLFQLMRIEYGVEPRMEHYASVVDLLG 695

Query: 482 KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTL 541
           ++G+++DA   +  MP+     +   L+ ACR H  +E+ E++A  L++ EP   +NY  
Sbjct: 696 RAGRLDDAYSFIRGMPIDADRSVWLCLLFACRAHRNMELGELVADNLLKMEPARGSNYVP 755

Query: 542 LSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           L  +  E   W  A  +   M+ +GL KS G S IE
Sbjct: 756 LLNLYGEVEMWDRAANLRASMKGRGLKKSPGCSWIE 791



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 148/540 (27%), Positives = 265/540 (49%), Gaps = 39/540 (7%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           +V +  Y Q L L+ +  H S L +     PS++K CA      H G  +H + +  G  
Sbjct: 30  LVQQGKYSQALELHSKTPH-SALTTAKFTFPSLLKTCASLSNLYH-GRTIHASIVTMGLQ 87

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYR-----DTISWNSIINCFTQNGFYVRSLE 115
           +DP I+ SLI+MY K     SA Q+FD+M        D   WN +I+ + + G +   L 
Sbjct: 88  SDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGLA 147

Query: 116 MFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLY 175
            F  M    + +                    GRQIH  +I +  FE   ++ TAL+ +Y
Sbjct: 148 QFCRMQELSWYMA-------------------GRQIHGYIIRN-MFEGDPYLETALIGMY 187

Query: 176 SKCHHWLIALRVFEQMVIR-NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTL 234
           S C   + A  +F ++  R N V+W  MI G +++  ++  ++L+   + E  K    + 
Sbjct: 188 SSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASF 247

Query: 235 TIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTK 294
           T    AC+    L  G+ +H       F  D ++  +L+ MY + + ++  A+ +F++  
Sbjct: 248 TGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAK-SGSVEDAKKVFDQVL 306

Query: 295 VKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG 354
            K+V + +++I  +  +G   +A+ L+++M+      +S T+ ++LS C+       G  
Sbjct: 307 DKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRT 366

Query: 355 VHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGY 414
           VH  ++K  +  +V+I +AL+ MY KCGS   +  +F  M  RD V+W ++I+G+  +  
Sbjct: 367 VHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRR 426

Query: 415 GEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEH-- 472
            ++AL LF  M++ GV+ D+  + +++S    AGL  E   L  +++    I   +E   
Sbjct: 427 FKDALDLFRAMEKEGVKADSDVMTSVIS----AGLGLENVEL-GHLIHGFAIKRGLESDV 481

Query: 473 -YAC-YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE 530
             AC  VD+  K G  E A  V S+MP K +    +S++S    +G  E++  L  Q+++
Sbjct: 482 FVACSLVDMYSKFGFAESAEMVFSSMPNK-NLVAWNSMISCYSWNGLPEMSINLLPQILQ 540



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 104/448 (23%), Positives = 203/448 (45%), Gaps = 31/448 (6%)

Query: 96  SWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALV 155
           S NS I    Q G Y ++LE+  +               ++  C+ +  L  GR IHA +
Sbjct: 22  SINSKIKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASI 81

Query: 156 IVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS-----WTAMISGCIDSQ 210
           +  G  +   +++T+L+++Y KC     AL+VF++M    + +     W  +I G     
Sbjct: 82  VTMG-LQSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYG 140

Query: 211 NYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSA 270
           +++ G+  F  MQ                   EL     G+ IHGY     F+ D +L  
Sbjct: 141 HFEEGLAQFCRMQ-------------------ELSWYMAGRQIHGYIIRNMFEGDPYLET 181

Query: 271 ALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE 330
           AL+ MY  C+  +    +  +     ++V W+ +I G+ ++G   ++++L+S  + E  +
Sbjct: 182 ALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCK 241

Query: 331 PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQI 390
             S +     ++C+    L  G  VHC ++K     D  +  +L+ MY+K GS+  + ++
Sbjct: 242 LVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKV 301

Query: 391 FNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLV 450
           F+++  ++      +IS +  +G   +AL L+ +M+      D+ T+ ++LS C+  G  
Sbjct: 302 FDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSY 361

Query: 451 KEAETLFNNVMKEK-KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLV 509
               T+   V+K   +  +AI+  +  + +  K G  EDA  V  TM  +      S + 
Sbjct: 362 DFGRTVHAEVIKRSMQSNVAIQ--SALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIA 419

Query: 510 SAC---RIHGRLEVAEMLAHQLIEAEPE 534
             C   R    L++   +  + ++A+ +
Sbjct: 420 GFCQNRRFKDALDLFRAMEKEGVKADSD 447


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 174/516 (33%), Positives = 290/516 (56%), Gaps = 2/516 (0%)

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D  + N ++     FS       LF ++   +   WN++I     N  +  ++E +  M 
Sbjct: 45  DNYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMR 104

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
             GF+        ++  C+++ +L+LG +IH LV V G F+  VFV T+L+ LY+KC + 
Sbjct: 105 SEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLV-VKGGFDCDVFVKTSLVCLYAKCGYL 163

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             A +VF+ +  +N VSWTA+ISG I    +   ID+FR +    + P   T+  VL AC
Sbjct: 164 EDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSAC 223

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
            +L DL +G+ IH      G   +  +  +L+ MY +C   +  AR +F+    KD+V W
Sbjct: 224 TQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGN-MEKARSVFDGMPEKDIVSW 282

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
            ++I+GY+ +G   EA+ LF +M+ E ++P+  T++ +LS+C R   L  G  V   + +
Sbjct: 283 GAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDR 342

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
               ++  +G AL+++Y+KCGS++ + ++F  M  +D V W  +ISG   +GY + +  L
Sbjct: 343 NEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGL 402

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
           F ++++ G++PD  T + +L  C HAGLV E    FN++ +   +  +IEHY C VDLLG
Sbjct: 403 FGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLG 462

Query: 482 KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTL 541
           ++G +++A +++  MPM+ +  +  +L+ ACRIH   ++AE+   QLIE EP N+ NY L
Sbjct: 463 RAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVL 522

Query: 542 LSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           LS + S +  W  A +V   M  K + K  G S IE
Sbjct: 523 LSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWIE 558



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 134/471 (28%), Positives = 228/471 (48%), Gaps = 14/471 (2%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           +VS   ++  +  Y   +   G   N    P V+KACA     Q  G+++H   +K G D
Sbjct: 87  LVSNDCFDDAIEFYGL-MRSEGFLPNNFTFPFVLKACARLLDLQ-LGVKIHTLVVKGGFD 144

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
            D  +  SL+ +YAK    E A+++FD++P ++ +SW +II+ +   G +  +++MFR +
Sbjct: 145 CDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRL 204

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
                   +  +  ++S C+Q+G+L  G  IH  ++  G    +VFV T+L+D+Y+KC +
Sbjct: 205 LEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVR-NVFVGTSLVDMYAKCGN 263

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
              A  VF+ M  ++ VSW AMI G   +      IDLF  MQRE VKP   T+  VL A
Sbjct: 264 MEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSA 323

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
           CA L  L  G+ + G      F ++  L  AL+ +Y +C  ++  A  +F+  K KD V+
Sbjct: 324 CARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCG-SMSRAWEVFKGMKEKDRVV 382

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           W++II G + +G +  +  LF ++    I+P+  T + +L  CT    +  G      + 
Sbjct: 383 WNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMY 442

Query: 361 K-AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFH---GYG 415
           +   L   +     ++++  + G +  +HQ+   M    + + W  L+     H      
Sbjct: 443 RFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLA 502

Query: 416 EEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
           E AL+  +E+     EP       +LS    A L  +        M EK+I
Sbjct: 503 ELALKQLIEL-----EPWNSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRI 548


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 178/558 (31%), Positives = 305/558 (54%), Gaps = 7/558 (1%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G+  N      V+ AC  ++  +  G ++H   +++G D D   +N+L+ MY+K      
Sbjct: 197 GVQPNEFGFSCVVNACTGSRDLEA-GRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRM 255

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A  +F ++P  D +SWN+ I+    +G    +LE+  +M   G V     L+ I+  C+ 
Sbjct: 256 AAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAG 315

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI--ALRVFEQMVIRNEVSW 199
            G   LGRQIH   +V  + +   +++  L+D+Y+K  H L+  A +VF+ +  R+ V W
Sbjct: 316 SGAFNLGRQIHGF-MVKANADSDNYIAFGLVDMYAK--HGLLDDAKKVFDWIPQRDLVLW 372

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
            A+ISGC     +   + LF  M++EG    R TL  VL + A L  + + + +H  A  
Sbjct: 373 NALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEK 432

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
            GF  D H+   L+  Y +C + L+ A  +FE+    D++ ++S+I   SQ     +A+K
Sbjct: 433 LGFLSDSHVVNGLIDSYWKC-DCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIK 491

Query: 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           LF  M  + ++P+   L ++L++C   S    G  VH +++K     DV  GNAL+  Y+
Sbjct: 492 LFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYA 551

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           KCGSI  +   F+ +  +  VSW+ +I G   HG+G+ AL +F  M +  + P+ IT+ +
Sbjct: 552 KCGSIEDADLAFSGLPEKGVVSWSAMIGGLAQHGHGKRALDVFHRMVDEHISPNHITMTS 611

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           +L ACNHAGLV EA+  FN++ +   I    EHYAC +DLLG++GK++DA ++V++MP +
Sbjct: 612 VLCACNHAGLVDEAKRYFNSMKEMFGIERTEEHYACMIDLLGRAGKLDDAMELVNSMPFQ 671

Query: 500 PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVW 559
            +  +  +L++A R+H   E+  + A +L   EPE +  + LL+   + +G W    +V 
Sbjct: 672 TNAAVWGALLAASRVHRDPELGRLAAEKLFILEPEKSGTHVLLANTYASAGMWDDVAKVR 731

Query: 560 RVMRAKGLSKSYGFSRIE 577
           ++M+   + K    S +E
Sbjct: 732 KLMKDSKVKKEPAMSWVE 749



 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 160/556 (28%), Positives = 289/556 (51%), Gaps = 13/556 (2%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           N  +LP V+K    A     FG QLH  A+ +G   D  ++N+L++MY  F   + A  +
Sbjct: 102 NEFVLPVVLKCAPDAG----FGTQLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMV 157

Query: 86  FDEMP-YRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGE 144
           FDE    R+T+SWN +++ + +N     ++++F EM   G        + +++ C+   +
Sbjct: 158 FDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRD 217

Query: 145 LELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMIS 204
           LE GR++HA+VI  G ++  VF + AL+D+YSK     +A  VF ++   + VSW A IS
Sbjct: 218 LEAGRKVHAMVIRTG-YDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFIS 276

Query: 205 GCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDF 264
           GC+   +    ++L   M+  G+ P   TL+ +L ACA       G+ IHG+      D 
Sbjct: 277 GCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADS 336

Query: 265 DHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM 324
           D++++  L+ MY +    L  A+ +F+    +D+V+W+++I G S     +EA+ LF RM
Sbjct: 337 DNYIAFGLVDMYAK-HGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRM 395

Query: 325 RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSI 384
           R E  + N  TL A+L S      +S    VH    K G   D  + N L++ Y KC  +
Sbjct: 396 RKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCL 455

Query: 385 TSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
             ++++F +  + D +++T++I+      +GE+A++LF+EM   G++PD   + ++L+AC
Sbjct: 456 NYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNAC 515

Query: 445 NHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRI 504
                 ++ + +  +++K + ++      A  V    K G IEDA    S +P K     
Sbjct: 516 ASLSAYEQGKQVHAHLIKRQFMSDVFAGNA-LVYTYAKCGSIEDADLAFSGLPEKGVVS- 573

Query: 505 LSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRA 564
            S+++     HG  + A  + H++++ E  +  + T+ S++C+ +   L  +E  R   +
Sbjct: 574 WSAMIGGLAQHGHGKRALDVFHRMVD-EHISPNHITMTSVLCACNHAGL-VDEAKRYFNS 631

Query: 565 KGLSKSYGFSRIENEY 580
             + + +G  R E  Y
Sbjct: 632 --MKEMFGIERTEEHY 645



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 142/500 (28%), Positives = 230/500 (46%), Gaps = 41/500 (8%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G  +H   LKSG  A  V  N L+S Y+K   P SA ++FDE+P    +SW+S++  ++ 
Sbjct: 23  GAHIHAHLLKSGLFA--VFRNHLLSFYSKCRLPGSARRVFDEIPDPCHVSWSSLVTAYSN 80

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           N     +L  FR M  C       +L  ++      G    G Q+HAL +  G     +F
Sbjct: 81  NAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAPDAG---FGTQLHALAMATG-LGGDIF 136

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVI-RNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
           V+ AL+ +Y        A  VF++    RN VSW  ++S  + +      + +F  M   
Sbjct: 137 VANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWG 196

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
           GV+P     + V+ AC   RDL  G+ +H      G+D D   + AL+ MY +  + +  
Sbjct: 197 GVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGD-IRM 255

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           A ++F +    DVV W++ I G    G    A++L  +M+   + PN  TL +IL +C  
Sbjct: 256 AAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAG 315

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
               + G  +H +++KA  + D  I   L++MY+K G +  + ++F+ +  RD V W  L
Sbjct: 316 SGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNAL 375

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN-----------HA-----GL 449
           ISG        EAL LF  M++ G + +  T+ A+L +             HA     G 
Sbjct: 376 ISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGF 435

Query: 450 VKEAET---LFNNVMK-----------EKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           + ++     L ++  K           EK  +  I  +   +  L +    EDA K+   
Sbjct: 436 LSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFME 495

Query: 496 MPMK---PSTRILSSLVSAC 512
           M  K   P   +LSSL++AC
Sbjct: 496 MLRKGLDPDPFVLSSLLNAC 515



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 103/334 (30%), Positives = 167/334 (50%), Gaps = 3/334 (0%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           ++  SGL  N   L S++KACA +      G Q+H   +K+ +D+D  I+  L+ MYAK 
Sbjct: 293 QMKSSGLVPNVFTLSSILKACAGSGAFN-LGRQIHGFMVKANADSDNYIAFGLVDMYAKH 351

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
              + A ++FD +P RD + WN++I+  +    +  +L +F  M   GF +    LA ++
Sbjct: 352 GLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVL 411

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
              + +  +   RQ+HAL    G F     V   L+D Y KC     A RVFE+    + 
Sbjct: 412 KSTASLEAISDTRQVHALAEKLG-FLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDI 470

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           +++T+MI+      + +  I LF  M R+G+ P    L+ +L ACA L     GK +H +
Sbjct: 471 IAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAH 530

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
                F  D     AL++ Y +C  ++  A + F     K VV WS++I G +Q G    
Sbjct: 531 LIKRQFMSDVFAGNALVYTYAKCG-SIEDADLAFSGLPEKGVVSWSAMIGGLAQHGHGKR 589

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLS 350
           A+ +F RM  E I PN +T+ ++L +C     + 
Sbjct: 590 ALDVFHRMVDEHISPNHITMTSVLCACNHAGLVD 623



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 113/390 (28%), Positives = 195/390 (50%), Gaps = 15/390 (3%)

Query: 130 ELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
           E +  +++  +    L  G  IHA ++  G F  +VF    LL  YSKC     A RVF+
Sbjct: 5   ETIGPLLTRYAATQSLLQGAHIHAHLLKSGLF--AVF-RNHLLSFYSKCRLPGSARRVFD 61

Query: 190 QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
           ++     VSW+++++   ++      +  FR+M+   V+     L +VL  CA   D   
Sbjct: 62  EIPDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVL-KCAP--DAGF 118

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV-KDVVIWSSIIRGY 308
           G  +H  A   G   D  ++ AL+ MY      +  AR++F+     ++ V W+ ++  Y
Sbjct: 119 GTQLHALAMATGLGGDIFVANALVAMYGGFG-FVDEARMVFDEAGCERNTVSWNGLMSAY 177

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
            ++   S A+K+F  M    ++PN      ++++CT    L  G  VH  +++ G + DV
Sbjct: 178 VKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDV 237

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
              NAL++MYSK G I  +  +F ++   D VSW   ISG   HG+ + AL+L L+M+ S
Sbjct: 238 FTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSS 297

Query: 429 GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACY--VDLLGKSGKI 486
           G+ P+  T+ +IL AC  +G       +   ++K    +   ++Y  +  VD+  K G +
Sbjct: 298 GLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADS---DNYIAFGLVDMYAKHGLL 354

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHG 516
           +DA KV   +P +    + ++L+S C  HG
Sbjct: 355 DDAKKVFDWIPQRDLV-LWNALISGCS-HG 382


>gi|297736478|emb|CBI25349.3| unnamed protein product [Vitis vinifera]
          Length = 1241

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 186/576 (32%), Positives = 316/576 (54%), Gaps = 4/576 (0%)

Query: 2    VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
            V    +E++L LY    + +     +A       AC++ +    FG Q+HC  +K     
Sbjct: 625  VENGMWEKSLELYSLAKNENCKLV-SASFTGAFTACSHGEVLD-FGRQVHCDVIKMNFQD 682

Query: 62   DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
            DP +  SL++MYAK    E A ++FD++  ++    N++I+ F  NG    +L ++ +M 
Sbjct: 683  DPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMK 742

Query: 122  LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
                 + +  ++ ++S CS +G  + GR +HA VI   S + +V + +ALL +Y KC   
Sbjct: 743  AGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVI-KRSMQSNVAIQSALLTMYYKCGST 801

Query: 182  LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
              A  VF  M  R+ V+W +MI+G   ++ +   +DLFRAM++EGVK     +T V+ A 
Sbjct: 802  EDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAG 861

Query: 242  AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
              L ++  G  IHG+A   G + D  ++ +L+ MY +   A   A ++F     K++V W
Sbjct: 862  LGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFA-ESAEMVFSSMPNKNLVAW 920

Query: 302  SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
            +S+I  YS +G    ++ L  ++       +SV++  +L + +  + L  G  +H Y ++
Sbjct: 921  NSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIR 980

Query: 362  AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
              +  D+ + NAL++MY KCG +  +  IF  M  R+ V+W ++I+GYG HG  EEA++L
Sbjct: 981  LQIPSDLQVENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSMIAGYGSHGNCEEAVRL 1040

Query: 422  FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
            F EM+ S   PD +T LA++++C+H+G+V+E   LF  +  E  +   +EHYA  VDLLG
Sbjct: 1041 FKEMKRSETAPDEVTFLALITSCSHSGMVEEGLNLFQLMRIEYGVEPRMEHYASVVDLLG 1100

Query: 482  KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTL 541
            ++G+++DA   +  MP+     +   L+ ACR H  +E+ E++A  L++ EP   +NY  
Sbjct: 1101 RAGRLDDAYSFIRGMPIDADRSVWLCLLFACRAHRNMELGELVADNLLKMEPARGSNYVP 1160

Query: 542  LSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            L  +  E   W  A  +   M+ +GL KS G S IE
Sbjct: 1161 LLNLYGEVEMWDRAANLRASMKGRGLKKSPGCSWIE 1196



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 151/540 (27%), Positives = 273/540 (50%), Gaps = 20/540 (3%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           +V +  Y Q L L+ +  H S L +     PS++K CA      H G  +H + +  G  
Sbjct: 416 LVQQGKYSQALELHSKTPH-SALTTAKFTFPSLLKTCASLSNLYH-GRTIHASIVTMGLQ 473

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYR-----DTISWNSIINCFTQNGFYVRSLE 115
           +DP I+ SLI+MY K     SA Q+FD+M        D   WN +I+ + + G +   L 
Sbjct: 474 SDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGLA 533

Query: 116 MFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLY 175
            F  M   G       L+ ++ +C+++     GRQIH  +I +  FE   ++ TAL+ +Y
Sbjct: 534 QFCRMQELGIRPDGYSLSIVLGICNRLSWYMAGRQIHGYIIRN-MFEGDPYLETALIGMY 592

Query: 176 SKCHHWLIALRVFEQMVIR-NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTL 234
           S C   + A  +F ++  R N V+W  MI G +++  ++  ++L+   + E  K    + 
Sbjct: 593 SSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASF 652

Query: 235 TIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTK 294
           T    AC+    L  G+ +H       F  D ++  +L+ MY + + ++  A+ +F++  
Sbjct: 653 TGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAK-SGSVEDAKKVFDQVL 711

Query: 295 VKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG 354
            K+V + +++I  +  +G   +A+ L+++M+      +S T+ ++LS C+       G  
Sbjct: 712 DKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRT 771

Query: 355 VHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGY 414
           VH  ++K  +  +V+I +AL+ MY KCGS   +  +F  M  RD V+W ++I+G+  +  
Sbjct: 772 VHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRR 831

Query: 415 GEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEH-- 472
            ++AL LF  M++ GV+ D+  + +++S    AGL  E   L  +++    I   +E   
Sbjct: 832 FKDALDLFRAMEKEGVKADSDVMTSVIS----AGLGLENVEL-GHLIHGFAIKRGLESDV 886

Query: 473 -YAC-YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE 530
             AC  VD+  K G  E A  V S+MP K +    +S++S    +G  E++  L  Q+++
Sbjct: 887 FVACSLVDMYSKFGFAESAEMVFSSMPNK-NLVAWNSMISCYSWNGLPEMSINLLPQILQ 945



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/401 (24%), Positives = 193/401 (48%), Gaps = 7/401 (1%)

Query: 101 INCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGS 160
           I    Q G Y ++LE+  +               ++  C+ +  L  GR IHA ++  G 
Sbjct: 413 IKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMG- 471

Query: 161 FELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS-----WTAMISGCIDSQNYDTG 215
            +   +++T+L+++Y KC     AL+VF++M    + +     W  +I G     +++ G
Sbjct: 472 LQSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEG 531

Query: 216 IDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHM 275
           +  F  MQ  G++P   +L+IVL  C  L     G+ IHGY     F+ D +L  AL+ M
Sbjct: 532 LAQFCRMQELGIRPDGYSLSIVLGICNRLSWYMAGRQIHGYIIRNMFEGDPYLETALIGM 591

Query: 276 YCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVT 335
           Y  C+  +    +  +     ++V W+ +I G+ ++G   ++++L+S  + E  +  S +
Sbjct: 592 YSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSAS 651

Query: 336 LLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA 395
                ++C+    L  G  VHC ++K     D  +  +L+ MY+K GS+  + ++F+++ 
Sbjct: 652 FTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVL 711

Query: 396 ARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAET 455
            ++      +IS +  +G   +AL L+ +M+      D+ T+ ++LS C+  G      T
Sbjct: 712 DKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRT 771

Query: 456 LFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
           +   V+K + +   +   +  + +  K G  EDA  V  TM
Sbjct: 772 VHAEVIK-RSMQSNVAIQSALLTMYYKCGSTEDADSVFYTM 811


>gi|255577487|ref|XP_002529622.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530907|gb|EEF32767.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 752

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 186/563 (33%), Positives = 302/563 (53%), Gaps = 5/563 (0%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           ++H  G   N      +++AC+ +   +  G Q+HC  +KSG D +  +  SLI+MY K 
Sbjct: 158 DMHKFGENFNEHTCTVILQACS-SPDDRILGEQIHCFVIKSGFDENVFVGTSLIAMYTKS 216

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
              + A ++FD M ++D    N +I  + + G   +++E+F+ +   GF         II
Sbjct: 217 GFFDVAEKVFDSMGFKDIRCLNFMILEYGRAGNGGKAIEVFKNLLNDGFEPTDYTFTNII 276

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
           S C+    +E G+Q+  L    G F     V  A++ +Y        A R+F  M  +N 
Sbjct: 277 STCNGDLGVEEGKQLQGLAFKYG-FLSETSVGNAIITMYGNSGMPKEAERMFSSMSEKNL 335

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQRE-GVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
           +SWTA+ISG   S      +D F  +  E G+      LT +L  C++  +L  G  IHG
Sbjct: 336 ISWTALISGYSRSGYGKKAVDAFLGLHDELGINFDSTLLTAILDCCSDCNNLELGLQIHG 395

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY-SQSGDL 314
           +    G   D +++ AL+ +Y +C E L  ARI+F+    K +  +++I+ G+   SGD 
Sbjct: 396 FVMKLGCACDVNVATALVDLYAKC-EKLQSARIVFDHLSNKGIASFNAILAGFLESSGDE 454

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
            + M LF+++RL  ++P+ VT   +LS    Q+ L  G   H Y +K G + ++S+ N++
Sbjct: 455 EDPMILFNQLRLAGVKPDMVTFSRLLSLLANQASLEKGRSFHAYTVKTGFDTNISVANSV 514

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           ++MY+KCGSI  +HQ+FN M  RD +SW  LIS Y  HG  +++L LF EM+  G +PD 
Sbjct: 515 ISMYAKCGSIEDAHQMFNIMNCRDSISWNALISAYALHGQAQKSLFLFEEMKRKGFDPDE 574

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS 494
            T+LAIL AC ++GL K+   LFN +  +  I   +EHYAC  DLLG++G + +A  ++ 
Sbjct: 575 FTILAILQACTYSGLWKDGICLFNLMEPKYGIKPLLEHYACMADLLGRAGYLSEAMDIIK 634

Query: 495 TMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLG 554
             P   ST +  +LV+ C++HG L   ++ +  L++  P  A +Y L+S + +       
Sbjct: 635 RSPFPKSTLLWRTLVNVCKLHGNLNFGKLASKHLLDLSPVEAGSYILVSNMYASEKMSDE 694

Query: 555 AEEVWRVMRAKGLSKSYGFSRIE 577
           A +V +VM      K  G S IE
Sbjct: 695 AAKVRKVMNDLKFRKEAGSSWIE 717



 Score =  201 bits (512), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 142/524 (27%), Positives = 269/524 (51%), Gaps = 11/524 (2%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G  +H   +K+GS  D    N+++++Y KF++ + A ++FD M  R+TI+W S+I  + +
Sbjct: 86  GQAVHSYLVKAGSQDDTFKGNNVLNLYVKFNRLDLAQKVFDRMRTRNTITWTSLIKGYLE 145

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           +  +  +  +  +M+  G          I+  CS   +  LG QIH  VI  G F+ +VF
Sbjct: 146 DNDFQSAFSIAGDMHKFGENFNEHTCTVILQACSSPDDRILGEQIHCFVIKSG-FDENVF 204

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           V T+L+ +Y+K   + +A +VF+ M  ++      MI     + N    I++F+ +  +G
Sbjct: 205 VGTSLIAMYTKSGFFDVAEKVFDSMGFKDIRCLNFMILEYGRAGNGGKAIEVFKNLLNDG 264

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
            +PT  T T ++  C     +  GK + G A+  GF  +  +  A++ MY          
Sbjct: 265 FEPTDYTFTNIISTCNGDLGVEEGKQLQGLAFKYGFLSETSVGNAIITMYGNSGMPKEAE 324

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE-RIEPNSVTLLAILSSCTR 345
           R +F     K+++ W+++I GYS+SG   +A+  F  +  E  I  +S  L AIL  C+ 
Sbjct: 325 R-MFSSMSEKNLISWTALISGYSRSGYGKKAVDAFLGLHDELGINFDSTLLTAILDCCSD 383

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
            + L  GL +H ++MK G   DV++  AL+++Y+KC  + S+  +F+ ++ +   S+  +
Sbjct: 384 CNNLELGLQIHGFVMKLGCACDVNVATALVDLYAKCEKLQSARIVFDHLSNKGIASFNAI 443

Query: 406 ISGY-GFHGYGEEALQLFLEMQESGVEPDAITVLAILS-ACNHAGLVKEAETLFNNVMKE 463
           ++G+    G  E+ + LF +++ +GV+PD +T   +LS   N A L K     F+    +
Sbjct: 444 LAGFLESSGDEEDPMILFNQLRLAGVKPDMVTFSRLLSLLANQASLEKGRS--FHAYTVK 501

Query: 464 KKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEM 523
                 I      + +  K G IEDA ++ + M  + S    ++L+SA  +HG+ + +  
Sbjct: 502 TGFDTNISVANSVISMYAKCGSIEDAHQMFNIMNCRDSIS-WNALISAYALHGQAQKSLF 560

Query: 524 LAHQLIEAEPENAANYTLLSMV--CSESGNWLGAEEVWRVMRAK 565
           L  ++ + +  +   +T+L+++  C+ SG W     ++ +M  K
Sbjct: 561 LFEEM-KRKGFDPDEFTILAILQACTYSGLWKDGICLFNLMEPK 603



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 124/260 (47%), Gaps = 12/260 (4%)

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
           RD   G+A+H Y    G   D      ++++Y +    L  A+ +F+R + ++ + W+S+
Sbjct: 81  RDFLLGQAVHSYLVKAGSQDDTFKGNNVLNLYVKFNR-LDLAQKVFDRMRTRNTITWTSL 139

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
           I+GY +  D   A  +   M       N  T   IL +C+       G  +HC+++K+G 
Sbjct: 140 IKGYLEDNDFQSAFSIAGDMHKFGENFNEHTCTVILQACSSPDDRILGEQIHCFVIKSGF 199

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
           + +V +G +L+ MY+K G    + ++F+ M  +D      +I  YG  G G +A+++F  
Sbjct: 200 DENVFVGTSLIAMYTKSGFFDVAEKVFDSMGFKDIRCLNFMILEYGRAGNGGKAIEVFKN 259

Query: 425 MQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK-----EKKIALAIEHYACYVDL 479
           +   G EP   T   I+S CN    V+E + L     K     E  +  AI      + +
Sbjct: 260 LLNDGFEPTDYTFTNIISTCNGDLGVEEGKQLQGLAFKYGFLSETSVGNAI------ITM 313

Query: 480 LGKSGKIEDACKVVSTMPMK 499
            G SG  ++A ++ S+M  K
Sbjct: 314 YGNSGMPKEAERMFSSMSEK 333


>gi|357468471|ref|XP_003604520.1| Coatomer subunit beta'-2 [Medicago truncatula]
 gi|355505575|gb|AES86717.1| Coatomer subunit beta'-2 [Medicago truncatula]
          Length = 1033

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 185/570 (32%), Positives = 298/570 (52%), Gaps = 3/570 (0%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           + L L+      SGL  +  ++   +KACA    + +FG  LH  ++KSG      +S++
Sbjct: 133 EALILFSNMWVDSGLQKDQFVVSVALKACALGM-NVYFGELLHGFSVKSGLINSVFVSSA 191

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           L+ MY K  K E    +F+ M  R+ +SW ++I      G  +  L  F EM+       
Sbjct: 192 LVDMYMKVGKTEQGCSVFENMTTRNVVSWTAVIVGLVHAGCSLDGLSYFSEMWRSKVGYD 251

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
           +   A  +   ++ G L  G+ IHA  I  G F  + +V   L  +YSKC      +R+F
Sbjct: 252 SHTFAVALKASAESGLLHYGKAIHAQTIKQG-FNETAYVVNTLGTMYSKCRKPDYVMRLF 310

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
            +M   + VSWT +I   +   + +  +D F+ M++  V P   T   V+ ACA L   +
Sbjct: 311 GKMSTPDVVSWTNLIMTYVQMGDEERALDAFKRMRKSDVSPNEYTFASVISACANLAITK 370

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
            G+ IHG+A   G      +S +++ +Y +C   L  A ++F+    KD++ WS+II  Y
Sbjct: 371 WGEQIHGHALRLGLVDALSVSNSIITLYSKCG-LLQEASLVFDGMTRKDIISWSTIISVY 429

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
            Q     EA    S M  E  +PN   L ++LS C   + L  G  VH Y +  GL+ + 
Sbjct: 430 CQGSHAKEAFNYLSWMSREGPKPNEFALASVLSVCGSMALLEPGKQVHAYALCIGLDHET 489

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
            + +AL++MYS+ G++  + +IF+ +   D VSWT +I+GY  HGY +EA+ LF  +   
Sbjct: 490 MVHSALISMYSRSGNLQEASKIFDSIKNNDIVSWTAMINGYAEHGYSQEAISLFENISSV 549

Query: 429 GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIED 488
           G+ PD +T + IL+ACNHAGLV      +  +  E +IA + EHY C +DLL ++G++ +
Sbjct: 550 GLMPDYVTFIGILTACNHAGLVDLGFYYYKLMTNEYQIAPSKEHYGCIIDLLCRAGRLSE 609

Query: 489 ACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSE 548
           A  +V  MP      + S+L+ ACR HG L+ A   A Q++   P +A  +  L+ + S 
Sbjct: 610 AEHMVRNMPFPCDDVVWSTLLRACRDHGDLDRAIWAAEQMLRLHPNSAGAHITLANIYSA 669

Query: 549 SGNWLGAEEVWRVMRAKGLSKSYGFSRIEN 578
           SG    A  V ++M++KG+ K  G+S I +
Sbjct: 670 SGRREEAAHVRKLMKSKGVIKEPGWSWINS 699



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 121/435 (27%), Positives = 212/435 (48%), Gaps = 12/435 (2%)

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           NS +    K  K   A  +F++M +RD ISW ++I  +        +L +F  M++   +
Sbjct: 88  NSQLKQLMKLGKICEARDMFNKMSHRDEISWTNLIAGYVNAANSNEALILFSNMWVDSGL 147

Query: 127 LKAELLAGI-ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
            K + +  + +  C+    +  G  +H   +  G    SVFVS+AL+D+Y K        
Sbjct: 148 QKDQFVVSVALKACALGMNVYFGELLHGFSVKSGLIN-SVFVSSALVDMYMKVGKTEQGC 206

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
            VFE M  RN VSWTA+I G + +     G+  F  M R  V     T  + L A AE  
Sbjct: 207 SVFENMTTRNVVSWTAVIVGLVHAGCSLDGLSYFSEMWRSKVGYDSHTFAVALKASAESG 266

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
            L  GKAIH      GF+   ++   L  MY +C +  +  R +F +    DVV W+++I
Sbjct: 267 LLHYGKAIHAQTIKQGFNETAYVVNTLGTMYSKCRKPDYVMR-LFGKMSTPDVVSWTNLI 325

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
             Y Q GD   A+  F RMR   + PN  T  +++S+C   +    G  +H + ++ GL 
Sbjct: 326 MTYVQMGDEERALDAFKRMRKSDVSPNEYTFASVISACANLAITKWGEQIHGHALRLGLV 385

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
             +S+ N+++ +YSKCG +  +  +F+ M  +D +SW+T+IS Y    + +EA      M
Sbjct: 386 DALSVSNSIITLYSKCGLLQEASLVFDGMTRKDIISWSTIISVYCQGSHAKEAFNYLSWM 445

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEH----YACYVDLLG 481
              G +P+   + ++LS C    L++  + +         + + ++H    ++  + +  
Sbjct: 446 SREGPKPNEFALASVLSVCGSMALLEPGKQV-----HAYALCIGLDHETMVHSALISMYS 500

Query: 482 KSGKIEDACKVVSTM 496
           +SG +++A K+  ++
Sbjct: 501 RSGNLQEASKIFDSI 515



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 72/157 (45%), Gaps = 6/157 (3%)

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ-ESGV 430
           N+ +    K G I  +  +FN+M+ RD +SWT LI+GY       EAL LF  M  +SG+
Sbjct: 88  NSQLKQLMKLGKICEARDMFNKMSHRDEISWTNLIAGYVNAANSNEALILFSNMWVDSGL 147

Query: 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDAC 490
           + D   V   L AC     V   E L    +K   I  ++   +  VD+  K GK E  C
Sbjct: 148 QKDQFVVSVALKACALGMNVYFGELLHGFSVKSGLIN-SVFVSSALVDMYMKVGKTEQGC 206

Query: 491 KVVSTMPMKPS---TRILSSLVSA-CRIHGRLEVAEM 523
            V   M  +     T ++  LV A C + G    +EM
Sbjct: 207 SVFENMTTRNVVSWTAVIVGLVHAGCSLDGLSYFSEM 243


>gi|15218216|ref|NP_173004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75191104|sp|Q9M9E2.1|PPR45_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g15510, chloroplastic; Flags: Precursor
 gi|8072389|gb|AAF71977.1|AC013453_2 Hypothetical protein [Arabidopsis thaliana]
 gi|300825685|gb|ADK35876.1| chloroplast vanilla cream 1 [Arabidopsis thaliana]
 gi|332191210|gb|AEE29331.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 866

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 187/574 (32%), Positives = 316/574 (55%), Gaps = 10/574 (1%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           ++++ + LY + L   G+  +    P V++ C         G ++H   ++ G + D  +
Sbjct: 175 YFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLAR-GKEVHVHVVRYGYELDIDV 233

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
            N+LI+MY K    +SA  LFD MP RD ISWN++I+ + +NG     LE+F  M   G 
Sbjct: 234 VNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMR--GL 291

Query: 126 VLKAEL--LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
            +  +L  L  +IS C  +G+  LGR IHA VI  G F + + V  +L  +Y     W  
Sbjct: 292 SVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTG-FAVDISVCNSLTQMYLNAGSWRE 350

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
           A ++F +M  ++ VSWT MISG   +   D  ID +R M ++ VKP  +T+  VL ACA 
Sbjct: 351 AEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACAT 410

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
           L DL  G  +H  A          ++  L++MY +C + +  A  IF     K+V+ W+S
Sbjct: 411 LGDLDTGVELHKLAIKARLISYVIVANNLINMYSKC-KCIDKALDIFHNIPRKNVISWTS 469

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           II G   +    EA+    +M++  ++PN++TL A L++C R   L  G  +H ++++ G
Sbjct: 470 IIAGLRLNNRCFEALIFLRQMKMT-LQPNAITLTAALAACARIGALMCGKEIHAHVLRTG 528

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
           +  D  + NAL++MY +CG + ++   FN    +D  SW  L++GY   G G   ++LF 
Sbjct: 529 VGLDDFLPNALLDMYVRCGRMNTAWSQFNSQK-KDVTSWNILLTGYSERGQGSMVVELFD 587

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS 483
            M +S V PD IT +++L  C+ + +V++    F+  M++  +   ++HYAC VDLLG++
Sbjct: 588 RMVKSRVRPDEITFISLLCGCSKSQMVRQGLMYFSK-MEDYGVTPNLKHYACVVDLLGRA 646

Query: 484 GKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLS 543
           G++++A K +  MP+ P   +  +L++ACRIH ++++ E+ A  + E + ++   Y LL 
Sbjct: 647 GELQEAHKFIQKMPVTPDPAVWGALLNACRIHHKIDLGELSAQHIFELDKKSVGYYILLC 706

Query: 544 MVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            + ++ G W    +V R+M+  GL+   G S +E
Sbjct: 707 NLYADCGKWREVAKVRRMMKENGLTVDAGCSWVE 740



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 118/406 (29%), Positives = 217/406 (53%), Gaps = 5/406 (1%)

Query: 29  ILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDE 88
           +  ++++ C + +  +  G +++  AL S S     + N+ ++M+ +F     A+ +F +
Sbjct: 96  VFVALVRLCEWKRAQEE-GSKVYSIALSSMSSLGVELGNAFLAMFVRFGNLVDAWYVFGK 154

Query: 89  MPYRDTISWNSIINCFTQNGFYVRSLEMF-REMYLCGFVLKAELLAGIISLCSQIGELEL 147
           M  R+  SWN ++  + + G++  ++ ++ R +++ G          ++  C  I +L  
Sbjct: 155 MSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLAR 214

Query: 148 GRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCI 207
           G+++H  V+  G +EL + V  AL+ +Y KC     A  +F++M  R+ +SW AMISG  
Sbjct: 215 GKEVHVHVVRYG-YELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYF 273

Query: 208 DSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
           ++     G++LF AM+   V P  +TLT V+ AC  L D R G+ IH Y    GF  D  
Sbjct: 274 ENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDIS 333

Query: 268 LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
           +  +L  MY     +   A  +F R + KD+V W+++I GY  +    +A+  +  M  +
Sbjct: 334 VCNSLTQMYLNAG-SWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQD 392

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
            ++P+ +T+ A+LS+C     L  G+ +H   +KA L   V + N L+NMYSKC  I  +
Sbjct: 393 SVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKA 452

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPD 433
             IF+ +  ++ +SWT++I+G   +    EAL +FL   +  ++P+
Sbjct: 453 LDIFHNIPRKNVISWTSIIAGLRLNNRCFEAL-IFLRQMKMTLQPN 497



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 116/423 (27%), Positives = 215/423 (50%), Gaps = 5/423 (1%)

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           NG    ++++   M      +  ++   ++ LC      E G +++++ +   S  L V 
Sbjct: 72  NGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMS-SLGVE 130

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLF-RAMQRE 225
           +  A L ++ +  + + A  VF +M  RN  SW  ++ G      +D  + L+ R +   
Sbjct: 131 LGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVG 190

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
           GVKP   T   VL  C  + DL  GK +H +    G++ D  +  AL+ MY +C + +  
Sbjct: 191 GVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGD-VKS 249

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           AR++F+R   +D++ W+++I GY ++G   E ++LF  MR   ++P+ +TL +++S+C  
Sbjct: 250 ARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACEL 309

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
                 G  +H Y++  G   D+S+ N+L  MY   GS   + ++F+ M  +D VSWTT+
Sbjct: 310 LGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTM 369

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           ISGY ++   ++A+  +  M +  V+PD ITV A+LSAC   G +     L    +K + 
Sbjct: 370 ISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARL 429

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
           I+  I      +++  K   I+ A  +   +P K +    +S+++  R++ R   A +  
Sbjct: 430 ISYVIVANN-LINMYSKCKCIDKALDIFHNIPRK-NVISWTSIIAGLRLNNRCFEALIFL 487

Query: 526 HQL 528
            Q+
Sbjct: 488 RQM 490


>gi|357512007|ref|XP_003626292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355501307|gb|AES82510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 650

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 199/583 (34%), Positives = 320/583 (54%), Gaps = 20/583 (3%)

Query: 14  YKQELHPSGLYS--NTAILPSVIKACAYAQTHQHFGLQLHCTALK-------SGSDADPV 64
           + Q L PS   S  N A L S++  C   + +   G  +H   +K        GS  + +
Sbjct: 19  HSQYLFPSTTKSLLNHADLTSLLTLCGRDR-NLTLGSSIHARIIKQPPSFDFDGSQRNAL 77

Query: 65  -ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC 123
            I NSL+SMY+K  +  +A  +FD MP RDT+SWN++I+ F +NG +  S + F++M   
Sbjct: 78  FIWNSLLSMYSKCGEFRNAGNVFDYMPVRDTVSWNTMISGFLRNGDFDTSFKFFKQMTES 137

Query: 124 GFVLKAELLAGIISLCSQIGELELG------RQIHALVIVDGSFELSVFVSTALLDLYSK 177
             V      A + ++ S    L LG      + IH LV V G FE  + V  AL+  Y K
Sbjct: 138 NRVCCRFDKATLTTMLSGCDGLRLGISTSVTQMIHGLVFV-GGFEREITVGNALITSYFK 196

Query: 178 CHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG-VKPTRVTLTI 236
           C  +    +VF++M+ RN V+WTA+ISG   ++ Y+  + LF  M+  G V P  +T   
Sbjct: 197 CECFSQGRKVFDEMIERNVVTWTAVISGLAQNEFYEDSLRLFAQMRCCGSVSPNVLTYLS 256

Query: 237 VLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK 296
            L+AC+ L+ LR+G+ IHG  +  G   D  + +ALM +Y +C  +L  A  IFE  +  
Sbjct: 257 SLMACSGLQVLRDGQKIHGLLWKLGMQSDLCIESALMDLYSKCG-SLDAAWQIFESAEEL 315

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVH 356
           D V  + I+  ++Q+G   EA+++F++M    +E ++  + A+L      ++L+ G  +H
Sbjct: 316 DGVSLTVILVAFAQNGFEEEAIQIFTKMVALGMEVDANMVSAVLGVFGVGTYLALGKQIH 375

Query: 357 CYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGE 416
             I+K     +  +GN L+NMYSKCG ++ S  +F +M  ++ VSW ++I+ +  HG G 
Sbjct: 376 SLIIKKNFCENPFVGNGLVNMYSKCGDLSDSLLVFYQMTQKNSVSWNSVIAAFARHGDGF 435

Query: 417 EALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACY 476
           +ALQ + EM+  GV P  +T L++L AC+HAGLV++   L  ++  +  I+   EHYAC 
Sbjct: 436 KALQFYEEMRVEGVAPTDVTFLSLLHACSHAGLVEKGMELLESMTNDHGISPRSEHYACV 495

Query: 477 VDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENA 536
           VD+LG++G + +A K +  +P      +  +L+ AC IHG  E+ +  A +L  A P + 
Sbjct: 496 VDMLGRAGHLNEAKKFIEGLPEHGGVLVWQALLGACSIHGDSEMGKYAADRLFSAAPASP 555

Query: 537 ANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIENE 579
           A Y L++ + S  GNW       + M+  G++K  G S IE E
Sbjct: 556 APYVLMANIYSSEGNWKERASSIKRMKEMGVAKEVGISWIEIE 598



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 157/340 (46%), Gaps = 17/340 (5%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           +    FYE +L L+ Q      +  N     S + AC+  Q  +  G ++H    K G  
Sbjct: 225 LAQNEFYEDSLRLFAQMRCCGSVSPNVLTYLSSLMACSGLQVLRD-GQKIHGLLWKLGMQ 283

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
           +D  I ++L+ +Y+K    ++A+Q+F+     D +S   I+  F QNGF   ++++F +M
Sbjct: 284 SDLCIESALMDLYSKCGSLDAAWQIFESAEELDGVSLTVILVAFAQNGFEEEAIQIFTKM 343

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
              G  + A +++ ++ +      L LG+QIH+L I+  +F  + FV   L+++YSKC  
Sbjct: 344 VALGMEVDANMVSAVLGVFGVGTYLALGKQIHSL-IIKKNFCENPFVGNGLVNMYSKCGD 402

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
              +L VF QM  +N VSW ++I+      +    +  +  M+ EGV PT VT   +L A
Sbjct: 403 LSDSLLVFYQMTQKNSVSWNSVIAAFARHGDGFKALQFYEEMRVEGVAPTDVTFLSLLHA 462

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKD--- 297
           C+       G    G         DH +S    H  C   + L  A  + E  K  +   
Sbjct: 463 CS-----HAGLVEKGMELLESMTNDHGISPRSEHYAC-VVDMLGRAGHLNEAKKFIEGLP 516

Query: 298 ----VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNS 333
               V++W +++   S  GD    M  ++  RL    P S
Sbjct: 517 EHGGVLVWQALLGACSIHGD--SEMGKYAADRLFSAAPAS 554


>gi|15221304|ref|NP_177599.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169837|sp|Q9CA56.1|PP121_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74600, chloroplastic; Flags: Precursor
 gi|12324789|gb|AAG52351.1|AC011765_3 hypothetical protein; 84160-81473 [Arabidopsis thaliana]
 gi|332197493|gb|AEE35614.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 895

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 193/570 (33%), Positives = 307/570 (53%), Gaps = 14/570 (2%)

Query: 11  LHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLI 70
           L ++K+  H SG+  N   + SVI AC           Q+H    KSG   D  ++ +LI
Sbjct: 336 LEIFKEMRH-SGVEINNCTVTSVISACGRPSMVCE-ASQVHAWVFKSGFYLDSSVAAALI 393

Query: 71  SMYAKFSKPESAYQLFDEMPYRDTISWNSIINC----FTQNGFYVRSLEMFREMYLCGFV 126
           SMY+K    + + Q+F+++   D I   +I+N     F+Q+    +++ +F  M   G  
Sbjct: 394 SMYSKSGDIDLSEQVFEDL---DDIQRQNIVNVMITSFSQSKKPGKAIRLFTRMLQEG-- 448

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
           L+ +  + + SL S +  L LG+Q+H   +  G   L + V ++L  LYSKC     + +
Sbjct: 449 LRTDEFS-VCSLLSVLDCLNLGKQVHGYTLKSG-LVLDLTVGSSLFTLYSKCGSLEESYK 506

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           +F+ +  ++   W +MISG  +       I LF  M  +G  P   TL  VL  C+    
Sbjct: 507 LFQGIPFKDNACWASMISGFNEYGYLREAIGLFSEMLDDGTSPDESTLAAVLTVCSSHPS 566

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L  GK IHGY    G D    L +AL++MY +C  +L  AR +++R    D V  SS+I 
Sbjct: 567 LPRGKEIHGYTLRAGIDKGMDLGSALVNMYSKCG-SLKLARQVYDRLPELDPVSCSSLIS 625

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           GYSQ G + +   LF  M +     +S  + +IL +       S G  VH YI K GL  
Sbjct: 626 GYSQHGLIQDGFLLFRDMVMSGFTMDSFAISSILKAAALSDESSLGAQVHAYITKIGLCT 685

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           + S+G++L+ MYSK GSI    + F+++   D ++WT LI+ Y  HG   EALQ++  M+
Sbjct: 686 EPSVGSSLLTMYSKFGSIDDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYNLMK 745

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
           E G +PD +T + +LSAC+H GLV+E+    N+++K+  I     HY C VD LG+SG++
Sbjct: 746 EKGFKPDKVTFVGVLSACSHGGLVEESYFHLNSMVKDYGIEPENRHYVCMVDALGRSGRL 805

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546
            +A   ++ M +KP   +  +L++AC+IHG +E+ ++ A + IE EP +A  Y  LS + 
Sbjct: 806 REAESFINNMHIKPDALVWGTLLAACKIHGEVELGKVAAKKAIELEPSDAGAYISLSNIL 865

Query: 547 SESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
           +E G W   EE  ++M+  G+ K  G+S +
Sbjct: 866 AEVGEWDEVEETRKLMKGTGVQKEPGWSSV 895



 Score =  224 bits (572), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 153/533 (28%), Positives = 279/533 (52%), Gaps = 25/533 (4%)

Query: 5   HFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPV 64
             +E++L  + + +H  G  +N     SVI AC+  Q    F   + C  +K G     V
Sbjct: 129 RLFEESLRFFSK-MHFLGFEANEISYGSVISACSALQA-PLFSELVCCHTIKMGYFFYEV 186

Query: 65  ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG 124
           + ++LI +++K  + E AY++F +    +   WN+II    +N  Y    ++F EM +  
Sbjct: 187 VESALIDVFSKNLRFEDAYKVFRDSLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCVGF 246

Query: 125 FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
               +   + +++ C+ + +L  G+ + A VI  G+ +  VFV TA++DLY+KC H   A
Sbjct: 247 QKPDSYTYSSVLAACASLEKLRFGKVVQARVIKCGAED--VFVCTAIVDLYAKCGHMAEA 304

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
           + VF ++   + VSWT M+SG   S +  + +++F+ M+  GV+    T+T V+ AC   
Sbjct: 305 MEVFSRIPNPSVVSWTVMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSVISACGRP 364

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
             +     +H + +  GF  D  ++AAL+ MY +  +     ++  +   ++   I + +
Sbjct: 365 SMVCEASQVHAWVFKSGFYLDSSVAAALISMYSKSGDIDLSEQVFEDLDDIQRQNIVNVM 424

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILS--SCTRQSFLSHGLGVHCYIMKA 362
           I  +SQS    +A++LF+RM  E +  +  ++ ++LS   C     L+ G  VH Y +K+
Sbjct: 425 ITSFSQSKKPGKAIRLFTRMLQEGLRTDEFSVCSLLSVLDC-----LNLGKQVHGYTLKS 479

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
           GL  D+++G++L  +YSKCGS+  S+++F  +  +D   W ++ISG+  +GY  EA+ LF
Sbjct: 480 GLVLDLTVGSSLFTLYSKCGSLEESYKLFQGIPFKDNACWASMISGFNEYGYLREAIGLF 539

Query: 423 LEMQESGVEPDAITVLAILSAC-NHAGLVKEAE----TLFNNVMKEKKIALAIEHYACYV 477
            EM + G  PD  T+ A+L+ C +H  L +  E    TL   + K   +  A+      V
Sbjct: 540 SEMLDDGTSPDESTLAAVLTVCSSHPSLPRGKEIHGYTLRAGIDKGMDLGSAL------V 593

Query: 478 DLLGKSGKIEDACKVVSTMP-MKPSTRILSSLVSACRIHGRLEVAEMLAHQLI 529
           ++  K G ++ A +V   +P + P +   SSL+S    HG ++   +L   ++
Sbjct: 594 NMYSKCGSLKLARQVYDRLPELDPVS--CSSLISGYSQHGLIQDGFLLFRDMV 644



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 141/513 (27%), Positives = 248/513 (48%), Gaps = 16/513 (3%)

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D  ++ SL+S Y+       A +LFD +P  D +S N +I+ + Q+  +  SL  F +M+
Sbjct: 83  DVFLTKSLLSWYSNSGSMADAAKLFDTIPQPDVVSCNIMISGYKQHRLFEESLRFFSKMH 142

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
             GF         +IS CS +        +    I  G F   V V +AL+D++SK   +
Sbjct: 143 FLGFEANEISYGSVISACSALQAPLFSELVCCHTIKMGYFFYEV-VESALIDVFSKNLRF 201

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             A +VF   +  N   W  +I+G + +QNY    DLF  M     KP   T + VL AC
Sbjct: 202 EDAYKVFRDSLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCVGFQKPDSYTYSSVLAAC 261

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A L  LR GK +      CG + D  +  A++ +Y +C   +  A  +F R     VV W
Sbjct: 262 ASLEKLRFGKVVQARVIKCGAE-DVFVCTAIVDLYAKCGH-MAEAMEVFSRIPNPSVVSW 319

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           + ++ GY++S D   A+++F  MR   +E N+ T+ +++S+C R S +     VH ++ K
Sbjct: 320 TVMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSVISACGRPSMVCEASQVHAWVFK 379

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIF---NEMAARDFVSWTTLISGYGFHGYGEEA 418
           +G   D S+  AL++MYSK G I  S Q+F   +++  ++ V+   +I+ +       +A
Sbjct: 380 SGFYLDSSVAAALISMYSKSGDIDLSEQVFEDLDDIQRQNIVN--VMITSFSQSKKPGKA 437

Query: 419 LQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVD 478
           ++LF  M + G+  D  +V ++LS  +   L K+     +    +  + L +   +    
Sbjct: 438 IRLFTRMLQEGLRTDEFSVCSLLSVLDCLNLGKQV----HGYTLKSGLVLDLTVGSSLFT 493

Query: 479 LLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE--AEPENA 536
           L  K G +E++ K+   +P K +    +S++S    +G L  A  L  ++++    P+ +
Sbjct: 494 LYSKCGSLEESYKLFQGIPFKDNA-CWASMISGFNEYGYLREAIGLFSEMLDDGTSPDES 552

Query: 537 ANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSK 569
               +L+ VCS   +    +E+       G+ K
Sbjct: 553 TLAAVLT-VCSSHPSLPRGKEIHGYTLRAGIDK 584



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 9/133 (6%)

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
           L FDV +  +L++ YS  GS+  + ++F+ +   D VS   +ISGY  H   EE+L+ F 
Sbjct: 80  LPFDVFLTKSLLSWYSNSGSMADAAKLFDTIPQPDVVSCNIMISGYKQHRLFEESLRFFS 139

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY----ACYVDL 479
           +M   G E + I+  +++SAC+          LF+ ++    I +    Y    +  +D+
Sbjct: 140 KMHFLGFEANEISYGSVISACSAL-----QAPLFSELVCCHTIKMGYFFYEVVESALIDV 194

Query: 480 LGKSGKIEDACKV 492
             K+ + EDA KV
Sbjct: 195 FSKNLRFEDAYKV 207


>gi|356503769|ref|XP_003520676.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g03800-like [Glycine max]
          Length = 874

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 190/607 (31%), Positives = 326/607 (53%), Gaps = 44/607 (7%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
            +SKH     LHL+ +    S L  N     +V+ AC+    H HFGLQLH  ALK+   
Sbjct: 138 FLSKHRQHHALHLFLRMTTRSHLPPNEYTYVAVLTACSSLLHHFHFGLQLHAAALKTAHF 197

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
             P ++N+L+S+YAK +   +A +LF+++P RD  SWN+II+   Q+  Y  +  +FR M
Sbjct: 198 DSPFVANALVSLYAKHASFHAALKLFNQIPRRDIASWNTIISAALQDSLYDTAFRLFRNM 257

Query: 121 YLC-GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH 179
                F +    L+ +++  + + E   G+Q+HA  +  G  E  + V   L+  YSK  
Sbjct: 258 QATDAFRVDDFTLSILLTASASLME---GQQVHAHAVKLG-LETDLNVGNGLIGFYSKFG 313

Query: 180 H-----WL--------------------------IALRVFEQMVIRNEVSWTAMISG-CI 207
           +     WL                          +AL+VF++M  +N VS+  +++G C 
Sbjct: 314 NVDDVEWLFEGMRVRDVITWTEMVTAYMEFGLVNLALKVFDEMPEKNSVSYNTVLAGFCR 373

Query: 208 DSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
           + Q ++  + LF  M  EG++ T  +LT V+ AC  L D +  K +HG+A   GF  + +
Sbjct: 374 NEQGFE-AMRLFVRMVEEGLELTDFSLTSVVDACGLLGDYKVSKQVHGFAVKFGFGSNGY 432

Query: 268 LSAALMHMYCECTEALHPARIIFERTKVKDV--VIWSSIIRGYSQSGDLSEAMKLFSRMR 325
           + AAL+ MY  C   +   + +F R ++++   V+W+++I GY+++G   EA+ LF   R
Sbjct: 433 VEAALLDMYTRCGRMVDAGK-MFLRWELEEFSSVVWTAMICGYARNGQPEEAIYLFHVGR 491

Query: 326 LE-RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSI 384
            + ++  + V   ++L  C     L  G  +HC+++K GL F++ +GNA+++MY KCGS+
Sbjct: 492 SDGKVIMDEVAAASMLGLCGTIGHLDMGKQIHCHVIKCGLGFNLEVGNAVVSMYFKCGSV 551

Query: 385 TSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
             + ++F +M   D V+W TLISG   H  G+ AL++++EM   G++P+ +T + I+SA 
Sbjct: 552 DDAMKVFGDMPCTDIVTWNTLISGNLMHRQGDRALEIWVEMLGEGIKPNQVTFVLIISAY 611

Query: 445 NHA--GLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPST 502
                 LV +   LFN++    +I     HYA ++ +LG  G +++A + ++ MP +PS 
Sbjct: 612 RQTNLNLVDDCRNLFNSMRTVYQIEPTSRHYASFISVLGHWGLLQEALETINNMPFQPSA 671

Query: 503 RILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVM 562
            +   L+  CR+H    + +  A  ++  EP++ + + L+S + S SG W  +E V   M
Sbjct: 672 LVWRVLLDGCRLHKNELIGKWAAQNILALEPKDPSTFILVSNLYSASGRWDRSEMVREDM 731

Query: 563 RAKGLSK 569
           R KG  K
Sbjct: 732 REKGFRK 738



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 141/538 (26%), Positives = 249/538 (46%), Gaps = 51/538 (9%)

Query: 45  HFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCF 104
           H    +H T LK   + D  +SN+LIS Y K +    A +LF  +P  + +S+ ++I+  
Sbjct: 81  HLAKTVHATLLKR-DEEDTHLSNALISTYLKLNLFPHALRLFLSLPSPNVVSYTTLISFL 139

Query: 105 TQNGFYVRSLEMFREMYLCGFVLKAE-LLAGIISLCSQ-IGELELGRQIHALVIVDGSFE 162
           +++  +  +L +F  M     +   E     +++ CS  +     G Q+HA  +    F+
Sbjct: 140 SKHRQH-HALHLFLRMTTRSHLPPNEYTYVAVLTACSSLLHHFHFGLQLHAAALKTAHFD 198

Query: 163 LSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM 222
            S FV+ AL+ LY+K   +  AL++F Q+  R+  SW  +IS  +    YDT   LFR M
Sbjct: 199 -SPFVANALVSLYAKHASFHAALKLFNQIPRRDIASWNTIISAALQDSLYDTAFRLFRNM 257

Query: 223 Q-REGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTE 281
           Q  +  +    TL+I+L A A L +   G+ +H +A   G + D ++   L+  Y +   
Sbjct: 258 QATDAFRVDDFTLSILLTASASLME---GQQVHAHAVKLGLETDLNVGNGLIGFYSKFGN 314

Query: 282 ALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS-------------------------- 315
            +     +FE  +V+DV+ W+ ++  Y + G ++                          
Sbjct: 315 -VDDVEWLFEGMRVRDVITWTEMVTAYMEFGLVNLALKVFDEMPEKNSVSYNTVLAGFCR 373

Query: 316 -----EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSI 370
                EAM+LF RM  E +E    +L +++ +C           VH + +K G   +  +
Sbjct: 374 NEQGFEAMRLFVRMVEEGLELTDFSLTSVVDACGLLGDYKVSKQVHGFAVKFGFGSNGYV 433

Query: 371 GNALMNMYSKCGSITSSHQIFNEMAARDF--VSWTTLISGYGFHGYGEEALQLFLEMQES 428
             AL++MY++CG +  + ++F      +F  V WT +I GY  +G  EEA+ LF   +  
Sbjct: 434 EAALLDMYTRCGRMVDAGKMFLRWELEEFSSVVWTAMICGYARNGQPEEAIYLFHVGRSD 493

Query: 429 G-VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487
           G V  D +   ++L  C   G +   + +  +V+K   +   +E     V +  K G ++
Sbjct: 494 GKVIMDEVAAASMLGLCGTIGHLDMGKQIHCHVIK-CGLGFNLEVGNAVVSMYFKCGSVD 552

Query: 488 DACKVVSTMPMKPSTRILS--SLVSACRIHGRLEVA-EMLAHQLIEAEPENAANYTLL 542
           DA KV   M   P T I++  +L+S   +H + + A E+    L E    N   + L+
Sbjct: 553 DAMKVFGDM---PCTDIVTWNTLISGNLMHRQGDRALEIWVEMLGEGIKPNQVTFVLI 607


>gi|147853412|emb|CAN82303.1| hypothetical protein VITISV_013933 [Vitis vinifera]
          Length = 549

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 175/513 (34%), Positives = 289/513 (56%), Gaps = 12/513 (2%)

Query: 72  MYAKFSKPESAYQLFDEMPYR-DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE 130
           MY+K ++   A  +F +  +  +  ++N+II+ F  NGF     E +++M   G +    
Sbjct: 1   MYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKF 60

Query: 131 LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQ 190
                I  C  + E+   ++IH L+   G  EL VF+ +AL++ Y K      A   FE+
Sbjct: 61  TFPCAIKACLDVLEI---KKIHGLLFKFG-LELDVFIGSALVNCYLKFGLMEHAQVAFEE 116

Query: 191 MVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNG 250
           + IR+ V W AM++G      ++  ++ FR M  E V P+R T+T +L   A + DL NG
Sbjct: 117 LPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNG 176

Query: 251 KAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQ 310
           + IHG+A   G+D    +S +L+ MY +C + +  A  IFE  + KD+  W+SI   + Q
Sbjct: 177 RIIHGFAMKMGYDSGVAVSNSLIDMYGKC-KCIEDALEIFEMMREKDIFSWNSIXSVHEQ 235

Query: 311 SGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD--- 367
            GD    ++L  RM    I+P+ VT+  +L +C+  + L HG  +H Y++ +GL  D   
Sbjct: 236 CGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKD 295

Query: 368 ---VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
              V + NA+++MY+KCGS+  +H +F  M  +D  SW  +I GYG HGYG EAL++F  
Sbjct: 296 IDDVLLKNAVIDMYAKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEMFSR 355

Query: 425 MQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSG 484
           M E  ++PD +T + +LSAC+HAG V +       +  +  +A  IEHY C +D+LG++G
Sbjct: 356 MCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLAQMKSKYDVAPTIEHYTCVIDMLGRAG 415

Query: 485 KIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSM 544
           ++++A ++  TMP++ +  +  +L++ACR+H    +AE+ A ++ E EPE+  +Y L+S 
Sbjct: 416 QLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSN 475

Query: 545 VCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           V    G +    EV   MR + + K+ G S IE
Sbjct: 476 VYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIE 508



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 151/504 (29%), Positives = 239/504 (47%), Gaps = 54/504 (10%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           ++  F E+    Y Q++   G+  +    P  IKAC      +    ++H    K G + 
Sbjct: 35  ITNGFPEEGFEFY-QKMRNEGVMPDKFTFPCAIKACLDVLEIK----KIHGLLFKFGLEL 89

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D  I ++L++ Y KF   E A   F+E+P RD + WN+++N + Q G +   LE FR M 
Sbjct: 90  DVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMN 149

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
               V     + GI+S+ + +G+L  GR IH   +  G ++  V VS +L+D+Y KC   
Sbjct: 150 DESVVPSRFTVTGILSVFAVMGDLNNGRIIHGFAMKMG-YDSGVAVSNSLIDMYGKCKCI 208

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             AL +FE M  ++  SW ++ S      ++D  + L   M   G++P  VT+T VL AC
Sbjct: 209 EDALEIFEMMREKDIFSWNSIXSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPAC 268

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHH------LSAALMHMYCECTEALHPARIIFERTKV 295
           + L  L +G+ IHGY    G   D        L  A++ MY +C  ++  A ++FER   
Sbjct: 269 SHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCG-SMRDAHLVFERMXN 327

Query: 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV 355
           KDV  W+ +I GY   G  +EA+++FSRM   +++P+ VT + +LS+C+   F+S G   
Sbjct: 328 KDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGR-- 385

Query: 356 HCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYG 415
                           N L  M SK               A     +T +I   G  G  
Sbjct: 386 ----------------NFLAQMKSKYD------------VAPTIEHYTCVIDMLGRAGQL 417

Query: 416 EEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC 475
           +EA +L L M    +E + +   A+L+AC    L K A  +   V  ++   L  EH   
Sbjct: 418 DEAYELALTMP---IEANPVVWRALLAACR---LHKHA--VLAEVAAQRVFELEPEHCGS 469

Query: 476 YV---DLLGKSGKIEDACKVVSTM 496
           YV   ++ G  G+ E+  +V  TM
Sbjct: 470 YVLMSNVYGAVGRYEEVLEVRHTM 493


>gi|358347043|ref|XP_003637572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503507|gb|AES84710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 833

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 188/600 (31%), Positives = 327/600 (54%), Gaps = 68/600 (11%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEM 89
            P V KAC      +  G  +H   ++ G +++  + N++ISMY K      A ++FDE+
Sbjct: 129 FPFVFKACGEISNFE-LGASIHGCVIRLGFESNVFVCNAVISMYGKCKAVVHARKVFDEL 187

Query: 90  PYR---DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAEL-LAGIISLCSQIGEL 145
            YR   D+++WNSI++ ++       ++ +FREM +   +L   + +  I+ +C  +G  
Sbjct: 188 CYRGICDSVTWNSIVSVYSHCFVPNVAVSLFREMTVGYGILPDTVGVVNILPVCGYLGLG 247

Query: 146 ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISG 205
             GRQ+H   +  G  E  VFV  AL+D+Y+KC     A +VFE+M  ++ V+W AM++G
Sbjct: 248 LCGRQVHGFCVRSGLVE-DVFVGNALVDMYAKCGKMEDANKVFERMRFKDVVTWNAMVTG 306

Query: 206 CIDSQNYDTGIDLFRAMQREGV-----------------------------------KPT 230
              +  ++  + LF  M+ E +                                   +P 
Sbjct: 307 YSQNGRFEDALSLFGKMREEKIESDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPN 366

Query: 231 RVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH-------LSAALMHMYCECTEAL 283
            VTL  +L ACA +  L +GK  H Y+       +H+       +  AL+ MY +C ++L
Sbjct: 367 VVTLMSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKC-KSL 425

Query: 284 HPARIIFER--TKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM-RLER-IEPNSVTLLAI 339
             AR +F+    K +DVV W+ +I GY+Q GD + A++LFS M +++  I PN  T+  +
Sbjct: 426 EVARAMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCV 485

Query: 340 LSSCTRQSFLSHGLGVHCYIMK-AGLNFDV-SIGNALMNMYSKCGSITSSHQIFNEMAAR 397
           L +C R + L  G  +H Y+++ + ++ DV  + N L++MYSK G + ++  +F+ M+ R
Sbjct: 486 LMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKR 545

Query: 398 DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLF 457
           + VSWT+L++GYG HG  E+A ++F EM++  +  D IT L +L AC+H+G+        
Sbjct: 546 NAVSWTSLLTGYGMHGRSEDAFRVFDEMRKEALVLDGITFLVVLYACSHSGM-------- 597

Query: 458 NNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGR 517
                +  +   +EHYAC VDLLG++G++ +A ++++ MP++P+  +  +L+SACRIH  
Sbjct: 598 -----DFGVDPGVEHYACMVDLLGRAGRLGEAMRLINDMPIEPTPVVWIALLSACRIHSN 652

Query: 518 LEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            E+AE  A +L+E + +N   YTLLS + + +  W     +  +M+  G+ K  G+S ++
Sbjct: 653 EELAEFAAKKLLELKADNDGTYTLLSNIYANARRWKDVARIGYLMKRTGIKKIPGWSWVK 712



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/324 (29%), Positives = 162/324 (50%), Gaps = 8/324 (2%)

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS-- 198
           Q   L   + +H   I++G    S    T L+  Y   +    A+ + E+ V  +  S  
Sbjct: 33  QCKTLTQAKLLHQQYIINGHLLNSYTNVTNLIYTYISSNSITNAILLLEKNVTPSHSSVY 92

Query: 199 -WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
            W  +I   +   + +T + LFR M+     P   T   V  AC E+ +   G +IHG  
Sbjct: 93  WWNQLIRHALHFNSPNTALRLFRRMKTLHWTPDHYTFPFVFKACGEISNFELGASIHGCV 152

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFER---TKVKDVVIWSSIIRGYSQSGDL 314
              GF+ +  +  A++ MY +C   +H AR +F+      + D V W+SI+  YS     
Sbjct: 153 IRLGFESNVFVCNAVISMYGKCKAVVH-ARKVFDELCYRGICDSVTWNSIVSVYSHCFVP 211

Query: 315 SEAMKLFSRMRLER-IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNA 373
           + A+ LF  M +   I P++V ++ IL  C        G  VH + +++GL  DV +GNA
Sbjct: 212 NVAVSLFREMTVGYGILPDTVGVVNILPVCGYLGLGLCGRQVHGFCVRSGLVEDVFVGNA 271

Query: 374 LMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPD 433
           L++MY+KCG +  ++++F  M  +D V+W  +++GY  +G  E+AL LF +M+E  +E D
Sbjct: 272 LVDMYAKCGKMEDANKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMREEKIESD 331

Query: 434 AITVLAILSACNHAGLVKEAETLF 457
            +T  +++S     G   EA  +F
Sbjct: 332 VVTWSSVISGYAQRGFGCEAMDVF 355



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 115/242 (47%), Gaps = 6/242 (2%)

Query: 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHC 357
           V  W+ +IR        + A++LF RM+     P+  T   +  +C   S    G  +H 
Sbjct: 91  VYWWNQLIRHALHFNSPNTALRLFRRMKTLHWTPDHYTFPFVFKACGEISNFELGASIHG 150

Query: 358 YIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR---DFVSWTTLISGYGFHGY 414
            +++ G   +V + NA+++MY KC ++  + ++F+E+  R   D V+W +++S Y     
Sbjct: 151 CVIRLGFESNVFVCNAVISMYGKCKAVVHARKVFDELCYRGICDSVTWNSIVSVYSHCFV 210

Query: 415 GEEALQLFLEMQES-GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY 473
              A+ LF EM    G+ PD + V+ IL  C + GL      +    ++   +       
Sbjct: 211 PNVAVSLFREMTVGYGILPDTVGVVNILPVCGYLGLGLCGRQVHGFCVRSGLVEDVFVGN 270

Query: 474 ACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEP 533
           A  VD+  K GK+EDA KV   M  K      +++V+    +GR E A  L  ++ E + 
Sbjct: 271 A-LVDMYAKCGKMEDANKVFERMRFKDVV-TWNAMVTGYSQNGRFEDALSLFGKMREEKI 328

Query: 534 EN 535
           E+
Sbjct: 329 ES 330


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 171/509 (33%), Positives = 296/509 (58%), Gaps = 3/509 (0%)

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           LI  YA+    ESA Q+FD+ P     +WN++I  +++ G    +L ++  M   G    
Sbjct: 45  LIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGVRPD 104

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
           +     ++  C++  +L  G +      VD  +   VFV  A+L+LY+KC     A+RVF
Sbjct: 105 SSTYTVVLKACTRSLDLRSGEETWRQA-VDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVF 163

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
           ++M  R+ V WT MI+G   +      +D++R M ++ V+   V +  ++ AC  L   +
Sbjct: 164 DKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSK 223

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
            G +IHGY        D  +  +L+ MY +    L  A  +F R   K+V+ WS++I G+
Sbjct: 224 MGLSIHGYMIRKDIIMDVIVQTSLVDMYAK-NGHLELASCVFRRMLYKNVISWSALISGF 282

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
           +Q+G    A++L   M+    +P+SV+L+++L +C++  FL  G  VH YI++  L+FD 
Sbjct: 283 AQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVRR-LHFDC 341

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
               A+++MYSKCGS++ +  +F++++ RD +SW  +I+ YG HG GEEAL LFL+M+E+
Sbjct: 342 VSSTAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMRET 401

Query: 429 GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIED 488
            V+PD  T  ++LSA +H+GLV++    F+ ++ E KI  + +HYAC VDLL ++G++E+
Sbjct: 402 NVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEE 461

Query: 489 ACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSE 548
           A +++ +M  +P   I  +L+S C  HG+  + EM A +++E  P++   Y+L+S   + 
Sbjct: 462 AQELIESMITEPGIAIWVALLSGCLNHGKFLIGEMAAKKVLELNPDDPGIYSLVSNFFAT 521

Query: 549 SGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +  W    EV ++M+  G+ K  G+S +E
Sbjct: 522 ARRWDEVAEVRKIMKKTGMKKVPGYSVME 550



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 123/233 (52%), Gaps = 4/233 (1%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
            + + +Y+Q +H   +  +  ++  +I+AC     H   GL +H   ++     D ++  
Sbjct: 188 REAVDIYRQ-MHKKRVEGDGVVMLGLIQACT-TLGHSKMGLSIHGYMIRKDIIMDVIVQT 245

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           SL+ MYAK    E A  +F  M Y++ ISW+++I+ F QNGF   +L++  +M   G+  
Sbjct: 246 SLVDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKP 305

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
            +  L  ++  CSQ+G L+LG+ +H  ++    F+     STA++D+YSKC     A  V
Sbjct: 306 DSVSLVSVLLACSQVGFLKLGKSVHGYIVRRLHFD--CVSSTAVIDMYSKCGSLSFARTV 363

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
           F+Q+  R+ +SW A+I+      + +  + LF  M+   VKP   T   +L A
Sbjct: 364 FDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATFASLLSA 416


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 178/546 (32%), Positives = 287/546 (52%), Gaps = 3/546 (0%)

Query: 33  VIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYR 92
           VI +   +  H   G Q+H   ++ G D    ++NS I+MY K      A ++F +M   
Sbjct: 302 VILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEV 361

Query: 93  DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELE-LGRQI 151
           D ISWN++I+   ++G    SL +F ++   G +     +  ++  CS + E   +GRQ+
Sbjct: 362 DLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQV 421

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQN 211
           H   +  G   L  FVSTAL+D+YSK      A  +F      +  SW AM+ G   S N
Sbjct: 422 HTCALKAG-IVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDN 480

Query: 212 YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAA 271
           Y   + LF  M   G K  ++T      A   L  L+ GK IH       F +D  + + 
Sbjct: 481 YREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISG 540

Query: 272 LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP 331
           ++ MY +C E +  AR +F +    D V W+++I G  ++G+  +A+  + +MRL  ++P
Sbjct: 541 ILDMYLKCGE-MKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQP 599

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIF 391
           +  T   ++ +C+  + L  G  +H  IMK    FD  +  +L++MY+KCG+I  ++ +F
Sbjct: 600 DEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLF 659

Query: 392 NEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVK 451
             M  R    W  +I G   HG  EEAL  F EM+  GV PD +T + +LSAC+H+GL  
Sbjct: 660 RRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTS 719

Query: 452 EAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSA 511
           +A   F+++ K   +   IEHY+C VD L ++G I++A KVVS+MP + S  +  +L++A
Sbjct: 720 DAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEAEKVVSSMPFEASATMYRTLLNA 779

Query: 512 CRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSY 571
           CR+ G  E  E +A +L   +P ++A Y LLS + + +  W  A     +M+   + K  
Sbjct: 780 CRVQGDKETGERVAEKLFTMDPSDSAAYVLLSNIYAAANQWENAVSARNMMKRVNVKKEP 839

Query: 572 GFSRIE 577
           GFS I+
Sbjct: 840 GFSWID 845



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 127/463 (27%), Positives = 236/463 (50%), Gaps = 12/463 (2%)

Query: 93  DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIH 152
           D   WN  ++ + Q G    +++ FR+M        +     I+S+ + +  LELG+QIH
Sbjct: 261 DVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIH 320

Query: 153 ALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNY 212
             V+  G ++  V V+ + +++Y K      A R+F QM   + +SW  +ISGC  S   
Sbjct: 321 GAVVRFG-WDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLE 379

Query: 213 DTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR-NGKAIHGYAYCCGFDFDHHLSAA 271
           +  + LF  + R G+ P + T+T VL AC+ L +    G+ +H  A   G   D  +S A
Sbjct: 380 ECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTA 439

Query: 272 LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP 331
           L+ +Y +  + +  A ++F      D+  W++++ G++ S +  EA++LFS M     + 
Sbjct: 440 LIDVYSKGGK-MEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKA 498

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIF 391
           + +T      +      L  G  +H  ++K   ++D+ + + +++MY KCG + S+ ++F
Sbjct: 499 DQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVF 558

Query: 392 NEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVK 451
           N++ + D V+WTT+ISG   +G  E+AL  + +M+ +GV+PD  T   ++ AC+    ++
Sbjct: 559 NQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALE 618

Query: 452 EAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLV 509
           + + +  N+M   K+  A + +     VD+  K G IEDA  +   M  + S  + ++++
Sbjct: 619 QGKQIHANIM---KLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTR-SVALWNAMI 674

Query: 510 SACRIHGRLEVAEMLAHQLIE--AEPENAANYTLLSMVCSESG 550
                HG  E A    +++      P+      +LS  CS SG
Sbjct: 675 VGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLS-ACSHSG 716



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/379 (29%), Positives = 191/379 (50%), Gaps = 3/379 (0%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           +L  SGL  +   + SV++AC+  +     G Q+H  ALK+G   D  +S +LI +Y+K 
Sbjct: 388 DLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKG 447

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
            K E A  LF      D  SWN++++ FT +  Y  +L +F  M+  G        A   
Sbjct: 448 GKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAA 507

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
                +  L+ G+QIHA V++   F   +FV + +LD+Y KC     A +VF Q+   ++
Sbjct: 508 KAAGCLVRLQQGKQIHA-VVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDD 566

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           V+WT +ISGC+++   +  +  +  M+  GV+P   T   ++ AC+ L  L  GK IH  
Sbjct: 567 VAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHAN 626

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
                  FD  +  +L+ MY +C   +  A  +F R   + V +W+++I G +Q G+  E
Sbjct: 627 IMKLNCAFDPFVMTSLVDMYAKCGN-IEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEE 685

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA-GLNFDVSIGNALM 375
           A+  F+ M+   + P+ VT + +LS+C+     S        + K  G+  ++   + L+
Sbjct: 686 ALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLV 745

Query: 376 NMYSKCGSITSSHQIFNEM 394
           +  S+ G I  + ++ + M
Sbjct: 746 DALSRAGHIQEAEKVVSSM 764



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 124/483 (25%), Positives = 226/483 (46%), Gaps = 55/483 (11%)

Query: 25  SNTAILP---SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           S +++LP   S+++  A A +    G + H   + SG + D  ++N+LI+MYAK     S
Sbjct: 8   SPSSLLPQWFSILRH-AIADSDLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFS 66

Query: 82  AYQLFDEMPY--RDTISWNSIINCFTQNG------FYVRSLEMFREMYLCGFVLKAELLA 133
           A +LFD  P   RD +++N+I+  +   G          +  +FR +     +     L+
Sbjct: 67  ARKLFDITPQSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLS 126

Query: 134 GIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI 193
            +  LC   G       +    +  G  +  VFV+ AL+++Y+K      A  +F++M +
Sbjct: 127 PLFKLCLLYGSPSASEALQGYAVKIG-LQWDVFVAGALVNIYAKFQRIREARVLFDRMPV 185

Query: 194 RNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL----RDLRN 249
           R+ V W  M+   ++    D  + LF A  R G++P  V++  +L+   +     R+L  
Sbjct: 186 RDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTILMGVGKKTVFERELEQ 245

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
            +A     + C  D                                 DV +W+  +  Y 
Sbjct: 246 VRAYATKLFVCDDD--------------------------------SDVTVWNKTLSSYL 273

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
           Q+G+  EA+  F  M   R+  +S+T + ILS     + L  G  +H  +++ G +  VS
Sbjct: 274 QAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVS 333

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
           + N+ +NMY K GS+  + ++F +M   D +SW T+ISG    G  E +L+LF+++  SG
Sbjct: 334 VANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSG 393

Query: 430 VEPDAITVLAILSACNHAGLVKEAETLFNNVMK-EKKIALAIEHY--ACYVDLLGKSGKI 486
           + PD  T+ ++L AC+    ++E+  +   V     K  + ++ +     +D+  K GK+
Sbjct: 394 LLPDQFTITSVLRACSS---LEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKM 450

Query: 487 EDA 489
           E+A
Sbjct: 451 EEA 453



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 135/552 (24%), Positives = 242/552 (43%), Gaps = 63/552 (11%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACA-YAQTHQHFGLQLHCTALKSGSDADPVISN 67
           +  H+++  L  S + +    L  + K C  Y        LQ +  A+K G   D  ++ 
Sbjct: 105 EAFHIFRL-LRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGY--AVKIGLQWDVFVAG 161

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF-- 125
           +L+++YAKF +   A  LFD MP RD + WN ++  + + G     L +F   +  G   
Sbjct: 162 ALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRP 221

Query: 126 --VLKAELLAGIISLCSQIGELELGRQIHA-LVIVDGSFELSVFVSTALLDLYSKCHHWL 182
             V    +L G+        ELE  R     L + D   +++V                 
Sbjct: 222 DCVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDDSDVTV----------------- 264

Query: 183 IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
                           W   +S  + +      +D FR M +  V    +T  ++L   A
Sbjct: 265 ----------------WNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVA 308

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
            L  L  GK IHG     G+D    ++ + ++MY +   +++ AR +F + K  D++ W+
Sbjct: 309 SLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAG-SVNYARRMFGQMKEVDLISWN 367

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT--RQSFLSHGLGVHCYIM 360
           ++I G ++SG    +++LF  +    + P+  T+ ++L +C+   +S+   G  VH   +
Sbjct: 368 TVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCV-GRQVHTCAL 426

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
           KAG+  D  +  AL+++YSK G +  +  +F+     D  SW  ++ G+       EAL+
Sbjct: 427 KAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALR 486

Query: 421 LFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYV--- 477
           LF  M E G + D IT      A      +++ + +   V+K +       HY  +V   
Sbjct: 487 LFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRF------HYDLFVISG 540

Query: 478 --DLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQ--LIEAEP 533
             D+  K G+++ A KV + +P  P     ++++S C  +G  E A    HQ  L   +P
Sbjct: 541 ILDMYLKCGEMKSARKVFNQIP-SPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQP 599

Query: 534 ENAANYTLLSMV 545
           +    YT  ++V
Sbjct: 600 D---EYTFATLV 608



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 15/183 (8%)

Query: 329 IEPNSV--TLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITS 386
           + P+S+     +IL      S L  G   H  I+ +GLN D  + N L+ MY+KCGS+ S
Sbjct: 7   VSPSSLLPQWFSILRHAIADSDLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFS 66

Query: 387 SHQIFN--EMAARDFVSWTTLISGYGFHG------YGEEALQLFLEMQESGVEPDAITVL 438
           + ++F+    + RD V++  +++ Y   G         EA  +F  +++S +     T+ 
Sbjct: 67  ARKLFDITPQSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLS 126

Query: 439 AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDACKVVSTM 496
            +   C   G    +E L    +   KI L  + +     V++  K  +I +A  +   M
Sbjct: 127 PLFKLCLLYGSPSASEALQGYAV---KIGLQWDVFVAGALVNIYAKFQRIREARVLFDRM 183

Query: 497 PMK 499
           P++
Sbjct: 184 PVR 186


>gi|255574235|ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532562|gb|EEF34350.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 730

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 176/562 (31%), Positives = 300/562 (53%), Gaps = 38/562 (6%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G QLH   +  G +  P+I   L++ Y  F     A+ + +       + WN +I+ + +
Sbjct: 112 GKQLHTLIISLGFEQHPIIVPKLVTFYTNFDLLADAHTITENSNILHPLPWNLLISSYVR 171

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           NG +  +L  +++M   G          ++  C +  ++  G+++HA  I       ++F
Sbjct: 172 NGLHGEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHA-SINASCLGWNLF 230

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISG--------------------- 205
           V  +L+ +Y+K      A  +FE M+ R++VSW  MISG                     
Sbjct: 231 VHNSLVSMYAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFELFGKMRVEG 290

Query: 206 --------------CIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGK 251
                         C+ S N++  ++L   M+  G+    V   I L AC+ +  ++ G+
Sbjct: 291 IELNIITWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATIIGLGACSHIGAIKLGR 350

Query: 252 AIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQS 311
            IHG A    +D   ++  AL+ MY  C    H A  +F+ T+ K+++ W+S++ GY+  
Sbjct: 351 EIHGSAIRSFYDGVDNVKNALITMYSRCKYLRH-AYNLFQSTRTKNIITWNSMLSGYTHM 409

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK-AGLNFDVSI 370
               EA  LF  M L  IEPN VT+ +IL  C R + L HG   HCYI++ AG    + +
Sbjct: 410 DRSEEASFLFREMLLSGIEPNYVTIASILPLCARVANLQHGKEFHCYILRRAGFKDYLLL 469

Query: 371 GNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV 430
            N+L++MY++ G +  + ++F+ ++ RD V++T+LI+GYG  G G EAL+LF EM++  +
Sbjct: 470 WNSLVDMYARSGKVLEAKRLFDSISRRDEVTYTSLIAGYGIQGEGREALKLFDEMKKRHI 529

Query: 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDAC 490
           +PD +T++A+LSAC+H+GLV E   LF  +     I   +EH+AC VDL G++G +  A 
Sbjct: 530 KPDHVTMVAVLSACSHSGLVTEGIKLFELMPSAYGIIPRLEHFACMVDLFGRAGLLHKAK 589

Query: 491 KVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESG 550
           ++++ MP +PS+ + ++L+ ACRIHG  E+ E  A +L+E  PEN+  Y L++ + + +G
Sbjct: 590 EMITRMPYRPSSAMWATLLGACRIHGNAEIGEWAAEKLLEMRPENSGYYVLIANMYAAAG 649

Query: 551 NWLGAEEVWRVMRAKGLSKSYG 572
            W    +V   MR  G+ K+ G
Sbjct: 650 CWSKLAKVRTYMRDLGVRKAPG 671



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 138/467 (29%), Positives = 225/467 (48%), Gaps = 47/467 (10%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V    + + L  YKQ  H  G+  +    PSV+KAC   +    FG +LH +   S    
Sbjct: 170 VRNGLHGEALSAYKQMTH-KGIRPDKFTYPSVLKACG-EKLDIAFGKKLHASINASCLGW 227

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           +  + NSL+SMYAK  +  +A  LF+ M  RD +SWN++I+ +   G +  + E+F +M 
Sbjct: 228 NLFVHNSLVSMYAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFELFGKMR 287

Query: 122 LCGFVLKA--------------------ELL-------------AGIISL--CSQIGELE 146
           + G  L                      ELL             A II L  CS IG ++
Sbjct: 288 VEGIELNIITWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATIIGLGACSHIGAIK 347

Query: 147 LGRQIHALVIVDGSFELSV-FVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISG 205
           LGR+IH   I   SF   V  V  AL+ +YS+C +   A  +F+    +N ++W +M+SG
Sbjct: 348 LGREIHGSAIR--SFYDGVDNVKNALITMYSRCKYLRHAYNLFQSTRTKNIITWNSMLSG 405

Query: 206 CIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY-CCGFDF 264
                  +    LFR M   G++P  VT+  +L  CA + +L++GK  H Y     GF  
Sbjct: 406 YTHMDRSEEASFLFREMLLSGIEPNYVTIASILPLCARVANLQHGKEFHCYILRRAGFKD 465

Query: 265 DHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM 324
              L  +L+ MY    + L   R +F+    +D V ++S+I GY   G+  EA+KLF  M
Sbjct: 466 YLLLWNSLVDMYARSGKVLEAKR-LFDSISRRDEVTYTSLIAGYGIQGEGREALKLFDEM 524

Query: 325 RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA-GLNFDVSIGNALMNMYSKCGS 383
           +   I+P+ VT++A+LS+C+    ++ G+ +   +  A G+   +     +++++ + G 
Sbjct: 525 KKRHIKPDHVTMVAVLSACSHSGLVTEGIKLFELMPSAYGIIPRLEHFACMVDLFGRAGL 584

Query: 384 ITSSHQIFNEMAARDFVS-WTTLISGYGFHG---YGEEALQLFLEMQ 426
           +  + ++   M  R   + W TL+     HG    GE A +  LEM+
Sbjct: 585 LHKAKEMITRMPYRPSSAMWATLLGACRIHGNAEIGEWAAEKLLEMR 631



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 114/217 (52%), Gaps = 1/217 (0%)

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
           L+ L  GK +H      GF+    +   L+  Y    + L  A  I E + +   + W+ 
Sbjct: 106 LKSLSQGKQLHTLIISLGFEQHPIIVPKLVTFYTNF-DLLADAHTITENSNILHPLPWNL 164

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           +I  Y ++G   EA+  + +M  + I P+  T  ++L +C  +  ++ G  +H  I  + 
Sbjct: 165 LISSYVRNGLHGEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINASC 224

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
           L +++ + N+L++MY+K G ++++  +F  M  RD VSW T+ISGY   G  +EA +LF 
Sbjct: 225 LGWNLFVHNSLVSMYAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFELFG 284

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNV 460
           +M+  G+E + IT   I   C  +G  +EA  L +++
Sbjct: 285 KMRVEGIELNIITWNTIAGGCVQSGNFEEALELLSHM 321



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 112/269 (41%), Gaps = 8/269 (2%)

Query: 305 IRGYSQSGDLSEAMKLFSRMRLE-----RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
           ++G++  G+L +A K FS ++         +    ++ ++L SC     LS G  +H  I
Sbjct: 60  LKGFASQGNLLKAFKTFSLIQRHASCSTSDDVVLHSVSSLLLSCVNLKSLSQGKQLHTLI 119

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEAL 419
           +  G      I   L+  Y+    +  +H I         + W  LIS Y  +G   EAL
Sbjct: 120 ISLGFEQHPIIVPKLVTFYTNFDLLADAHTITENSNILHPLPWNLLISSYVRNGLHGEAL 179

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479
             + +M   G+ PD  T  ++L AC     +   + L  ++     +   +  +   V +
Sbjct: 180 SAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASI-NASCLGWNLFVHNSLVSM 238

Query: 480 LGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRL-EVAEMLAHQLIEAEPENAAN 538
             K+G++  A  +   M  +      ++++S     G   E  E+     +E    N   
Sbjct: 239 YAKTGELSTARCLFENMLERDDVS-WNTMISGYASKGMWKEAFELFGKMRVEGIELNIIT 297

Query: 539 YTLLSMVCSESGNWLGAEEVWRVMRAKGL 567
           +  ++  C +SGN+  A E+   MR+ G+
Sbjct: 298 WNTIAGGCVQSGNFEEALELLSHMRSYGI 326


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 170/499 (34%), Positives = 280/499 (56%), Gaps = 37/499 (7%)

Query: 101 INCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGS 160
           +N +T    Y+R L++  + ++   VLKA         CSQI    +G++IH   + +G 
Sbjct: 94  LNTYT----YMRKLDIEVDSFIIPSVLKA---------CSQISVARMGKEIHGFSVKNGL 140

Query: 161 FELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSW--------------------- 199
               VFV  AL+ +YS+C   + A  +F++M  R+ VSW                     
Sbjct: 141 VS-DVFVVNALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVS 199

Query: 200 -TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258
            TAMI+G I   + + G  LF  M  E V P  +T+  ++++C  +  ++ GK +H Y  
Sbjct: 200 WTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYIL 259

Query: 259 CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAM 318
             GF     L+ AL+ MY +C E +  AR IF+  K KDV+ W+++I  Y+Q+  +  A 
Sbjct: 260 RNGFGMSLALATALVDMYGKCGE-IRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAF 318

Query: 319 KLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMY 378
           +LF +MR   + PN +T++++LS C     L  G   H YI K G+  DV +  AL++MY
Sbjct: 319 QLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMY 378

Query: 379 SKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
           +KCG I+ + ++F+E   RD  +W  +++GYG HGYGE+AL+LF EM+  GV+P+ IT +
Sbjct: 379 AKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFI 438

Query: 439 AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPM 498
             L AC+HAGLV E + LF  ++ +  +   +EHY C VDLLG++G +++A K++ +MP+
Sbjct: 439 GALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPV 498

Query: 499 KPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEV 558
            P+  I  ++++AC+IH    + E+ A +L+  EP+N     L+S + + +  W     +
Sbjct: 499 TPNIAIWGAMLAACKIHKNSNMGELAARELLALEPQNCGYKVLMSNIYAAANRWNDVAGM 558

Query: 559 WRVMRAKGLSKSYGFSRIE 577
            + ++  G+ K  G S IE
Sbjct: 559 RKAVKDTGIKKEPGMSSIE 577



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 144/548 (26%), Positives = 263/548 (47%), Gaps = 53/548 (9%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           ++ I+PSV+KAC+     +  G ++H  ++K+G  +D  + N+L+ MY++     SA  L
Sbjct: 108 DSFIIPSVLKACSQISVAR-MGKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARLL 166

Query: 86  FDEMPYRDTISWNSIINCFTQ--NGFYVRSLEMFREMYLCGFVLKAELLAG--------- 134
           FD+M  RD +SW+++I  +     GF  RS+  +  M + G++   +L  G         
Sbjct: 167 FDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAM-IAGYIRCNDLEEGERLFVRMIE 225

Query: 135 ------------IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL 182
                       +I  C  +G ++LG+++HA ++ +G F +S+ ++TAL+D+Y KC    
Sbjct: 226 ENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNG-FGMSLALATALVDMYGKCGEIR 284

Query: 183 IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
            A  +F+ M  ++ ++WTAMIS    +   D    LF  M+  GV+P  +T+  +L  CA
Sbjct: 285 SARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCA 344

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
               L  GK  H Y    G + D  L  AL+ MY +C + +  A+ +F     +D+  W+
Sbjct: 345 VNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGD-ISGAQRLFSEAIDRDICTWN 403

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV-HCYIMK 361
            ++ GY   G   +A+KLF+ M    ++PN +T +  L +C+    +  G G+    I  
Sbjct: 404 VMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHD 463

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS-WTTLISGYGFH---GYGEE 417
            GL   V     ++++  + G +  ++++   M     ++ W  +++    H     GE 
Sbjct: 464 FGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIHKNSNMGEL 523

Query: 418 ALQ--LFLEMQESGVEPDAITVLAILSACNH----AGLVKEAETLFNNVMKEKKIALAIE 471
           A +  L LE Q  G +   + +  I +A N     AG+ K  +     + KE  ++ +IE
Sbjct: 524 AARELLALEPQNCGYK---VLMSNIYAAANRWNDVAGMRKAVKD--TGIKKEPGMS-SIE 577

Query: 472 HYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA 531
                V+ L    K+ D    +    ++  + +L+ +    +  G L    ++ H + E 
Sbjct: 578 -----VNGLVHDFKMGDTAHPL----IEKISEMLAEMSKKLKEAGYLPDTSVVLHNIDEE 628

Query: 532 EPENAANY 539
           E E A NY
Sbjct: 629 EKETALNY 636



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 117/231 (50%), Gaps = 2/231 (0%)

Query: 23  LYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESA 82
           ++ N   + S+I +C +    Q  G +LH   L++G      ++ +L+ MY K  +  SA
Sbjct: 228 VFPNDITMLSLIISCGFVGAVQ-LGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSA 286

Query: 83  YQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQI 142
             +FD M  +D ++W ++I+ + Q      + ++F +M   G       +  ++SLC+  
Sbjct: 287 RAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVN 346

Query: 143 GELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAM 202
           G L++G+  HA +   G  E+ V + TAL+D+Y+KC     A R+F + + R+  +W  M
Sbjct: 347 GALDMGKWFHAYIDKQG-VEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVM 405

Query: 203 ISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAI 253
           ++G       +  + LF  M+  GVKP  +T    L AC+    +  GK +
Sbjct: 406 MAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGL 456



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 108/205 (52%), Gaps = 23/205 (11%)

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
           A+  ++ MR   IE +S  + ++L +C++ S    G  +H + +K GL  DV + NALM 
Sbjct: 93  ALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQ 152

Query: 377 MYSKCGSITSSHQIFNEMAARDFVSWTTLISGYG--FHGYG------------------- 415
           MYS+CGS+ S+  +F++M+ RD VSW+T+I  Y   F+G+                    
Sbjct: 153 MYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCND 212

Query: 416 -EEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYA 474
            EE  +LF+ M E  V P+ IT+L+++ +C   G V+  + L   +++     +++    
Sbjct: 213 LEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILR-NGFGMSLALAT 271

Query: 475 CYVDLLGKSGKIEDACKVVSTMPMK 499
             VD+ GK G+I  A  +  +M  K
Sbjct: 272 ALVDMYGKCGEIRSARAIFDSMKNK 296



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 88/200 (44%), Gaps = 2/200 (1%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           ++  +G+  N   + S++  CA        G   H    K G + D ++  +LI MYAK 
Sbjct: 323 QMRDNGVRPNELTMVSLLSLCA-VNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKC 381

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
                A +LF E   RD  +WN ++  +  +G+  ++L++F EM   G         G +
Sbjct: 382 GDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGAL 441

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
             CS  G +  G+ +   +I D      V     ++DL  +      A ++ E M +   
Sbjct: 442 HACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPN 501

Query: 197 VS-WTAMISGCIDSQNYDTG 215
           ++ W AM++ C   +N + G
Sbjct: 502 IAIWGAMLAACKIHKNSNMG 521


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 175/572 (30%), Positives = 308/572 (53%), Gaps = 5/572 (0%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           Y++ L ++ Q +    +        +++ ACA  ++ +  G+++H   L+ G + D  + 
Sbjct: 87  YDRALGMFYQ-MQEEDVMPTKVTYVAILNACASTESLKD-GMEIHGQILQQGFEGDVFVG 144

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
            +LI+MY K      A+  F  + +RD +SW ++I    Q+  +  +  ++R M L G V
Sbjct: 145 TALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVV 204

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
                L  + +       L  G+ I++LV      E  V V  + ++++        A R
Sbjct: 205 PNKITLYTVFNAYGDPHYLSEGKFIYSLV-SSRVMESDVRVMNSAMNMFGNAGLLGDARR 263

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           +FE MV R+ V+W  +I+  + ++N+   + LF  +Q++G+K   +T  ++L     L  
Sbjct: 264 LFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTSLTS 323

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L  GK IH      G+D D  ++ ALM +Y  C EA   A  IF     KDV+ W+ +  
Sbjct: 324 LAKGKVIHELVKEAGYDRDVVVATALMSLYGRC-EAPGQAWKIFVDMGSKDVITWTVMCV 382

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
            Y+Q+G   EA++LF  M+LE   P S TL+A+L +C   + L  G  +H +I++ G   
Sbjct: 383 AYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENGFRM 442

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           ++ +  AL+NMY KCG +  +  +F +MA RD + W +++  Y  HGY +E LQLF +MQ
Sbjct: 443 EMVVETALINMYGKCGKMAEARSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQ 502

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
             G + DA++ +++LSA +H+G V +    F  ++++  I    E Y C VDLLG++G+I
Sbjct: 503 LDGEKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRI 562

Query: 487 EDACKVVSTMP-MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV 545
           ++A  +V  +    P   +  +L+ ACR H + + A+  A Q++E +P ++  Y +LS V
Sbjct: 563 QEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNV 622

Query: 546 CSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            + +G+W G   + ++MR++G+ K  G S IE
Sbjct: 623 YAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIE 654



 Score =  249 bits (635), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 152/528 (28%), Positives = 279/528 (52%), Gaps = 8/528 (1%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           +TA   ++++ C+ A+   H G ++H      G + + ++   LI MYA+      A Q+
Sbjct: 4   DTAFFVALLQRCSSAKNVDH-GRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQV 62

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL 145
           F+ +  +D  +W  +I  + Q G Y R+L MF +M     +        I++ C+    L
Sbjct: 63  FEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESL 122

Query: 146 ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISG 205
           + G +IH  ++  G FE  VFV TAL+++Y+KC     A   F+++  R+ VSWTAMI+ 
Sbjct: 123 KDGMEIHGQILQQG-FEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAA 181

Query: 206 CIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFD 265
           C+    +     L+R MQ +GV P ++TL  V  A  +   L  GK I+        + D
Sbjct: 182 CVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMESD 241

Query: 266 HHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR 325
             +  + M+M+      L  AR +FE    +DVV W+ +I  Y Q+ +  EA++LF R++
Sbjct: 242 VRVMNSAMNMFGNAG-LLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQ 300

Query: 326 LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSIT 385
            + I+ N +T + +L+  T  + L+ G  +H  + +AG + DV +  ALM++Y +C +  
Sbjct: 301 QDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPG 360

Query: 386 SSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
            + +IF +M ++D ++WT +   Y  +G+ +EALQLF EMQ  G  P + T++A+L  C 
Sbjct: 361 QAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCA 420

Query: 446 HAGLVKEAETLFNNVMKEK-KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRI 504
           H   +++   + +++++   ++ + +E     +++ GK GK+ +A  V   M  K    +
Sbjct: 421 HLAALQKGRQIHSHIIENGFRMEMVVE--TALINMYGKCGKMAEARSVFEKMA-KRDILV 477

Query: 505 LSSLVSACRIHGRLEVAEMLAHQL-IEAEPENAANYTLLSMVCSESGN 551
            +S++ A   HG  +    L +Q+ ++ E  +A ++  +    S SG+
Sbjct: 478 WNSMLGAYAQHGYYDETLQLFNQMQLDGEKADAVSFVSVLSALSHSGS 525



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 141/269 (52%), Gaps = 2/269 (0%)

Query: 228 KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPAR 287
           KP       +L  C+  +++ +G+ +H +    GF+ ++ +   L+ MY +C  ++  A+
Sbjct: 2   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCG-SVPEAQ 60

Query: 288 IIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQS 347
            +FE  + KDV  W+ +I  Y Q GD   A+ +F +M+ E + P  VT +AIL++C    
Sbjct: 61  QVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTE 120

Query: 348 FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLIS 407
            L  G+ +H  I++ G   DV +G AL+NMY+KCGS+  +   F  +  RD VSWT +I+
Sbjct: 121 SLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIA 180

Query: 408 GYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIA 467
               H     A  L+  MQ  GV P+ IT+  + +A      + E + ++ +++  + + 
Sbjct: 181 ACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIY-SLVSSRVME 239

Query: 468 LAIEHYACYVDLLGKSGKIEDACKVVSTM 496
             +      +++ G +G + DA ++   M
Sbjct: 240 SDVRVMNSAMNMFGNAGLLGDARRLFEDM 268


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 180/535 (33%), Positives = 294/535 (54%), Gaps = 8/535 (1%)

Query: 49  QLHCTALKS--GSDADPVISNSLISMYAKF--SKPESAYQLFDEMPYRDTISWNSIINCF 104
           Q+H + +K+    DA   IS  L ++ A+     P  A  L  ++   +   +N+II   
Sbjct: 40  QIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALSLLAQLRTPNLPLYNAIIRGL 99

Query: 105 -TQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFEL 163
            T N   +  L ++++M   G V     +  ++  C++   +  G ++H   I  G    
Sbjct: 100 ATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGEEVHGQAIKMG-LAS 158

Query: 164 SVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQ 223
            V+VS  L+ +Y+ C     A +VF+    R+ VSWT MI G +       G+ LF  M 
Sbjct: 159 DVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMC 218

Query: 224 REGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY-CCGFDFDHHLSAALMHMYCECTEA 282
            E ++   +TL IVL +CA L DLR G+ +H Y       + D  +  AL+ MY +C +A
Sbjct: 219 GENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDA 278

Query: 283 LHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSS 342
            + AR +F+   VK+VV W+S+I G +Q G   E++ +F +M+   ++P+ VTL+A+L+S
Sbjct: 279 -NFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNS 337

Query: 343 CTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSW 402
           C     L  G  VH Y+ +  +  D  IGNAL++MY+KCGSI  +  +F  M  +D  S+
Sbjct: 338 CANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSY 397

Query: 403 TTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462
           T +I G   HG G +AL LF EM + G+EPD +T + +L+AC+H GLV+E    F ++  
Sbjct: 398 TAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMST 457

Query: 463 EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAE 522
              +   +EHY C VDLLG++G I +A + +  MP++P   +L +L+ AC+IHG++E+ E
Sbjct: 458 IYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGE 517

Query: 523 MLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +  ++ + EP     Y L+S + S +  W  A ++ + M+ + L K+ G S IE
Sbjct: 518 SVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEKTPGCSSIE 572



 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 151/495 (30%), Positives = 241/495 (48%), Gaps = 52/495 (10%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           + L +YKQ L   G+  +   +P V+KACA ++  +  G ++H  A+K G  +D  +SN+
Sbjct: 108 EGLVVYKQMLS-KGIVPDNYTIPFVLKACAESRAVRE-GEEVHGQAIKMGLASDVYVSNT 165

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           L+ MYA      SA ++FD  P RD +SW ++I  + + GF    + +F EM  CG  L+
Sbjct: 166 LMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEM--CGENLQ 223

Query: 129 AE--LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
           A+   L  ++S C+++G+L LGR++H  +I + +  L VFV  AL+D+Y KC     A +
Sbjct: 224 ADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARK 283

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VF++M ++N VSW +MISG      +   + +FR MQR GVKP  VTL  VL +CA L  
Sbjct: 284 VFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGV 343

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L  GK +H Y        D  +  AL+ MY +C  ++  A  +F+    KDV  ++++I 
Sbjct: 344 LELGKWVHAYLDRNQIRADGFIGNALVDMYAKCG-SIDQACWVFQAMNRKDVYSYTAMIV 402

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           G +  G   +A+ LFS M    IEP+ VT + +L++C                       
Sbjct: 403 GLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTAC----------------------- 439

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAA-----RDFVSWTTLISGYGFHGYGEEALQL 421
                       S  G +    + F +M+           +  ++   G  G   EA + 
Sbjct: 440 ------------SHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEF 487

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
              M    +EPDA  + A+L AC   G V+  E++   +  EK        Y    ++  
Sbjct: 488 IRNMP---IEPDAFVLGALLGACKIHGKVELGESVMKKI--EKIEPRKDGAYVLMSNIYS 542

Query: 482 KSGKIEDACKVVSTM 496
            + +  DA K+  TM
Sbjct: 543 SANRWRDALKLRKTM 557



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 76/150 (50%), Gaps = 2/150 (1%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           +  K  ++++L+++++ +   G+  +   L +V+ +CA     +  G  +H    ++   
Sbjct: 303 LAQKGQFKESLYMFRK-MQRLGVKPDDVTLVAVLNSCANLGVLE-LGKWVHAYLDRNQIR 360

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
           AD  I N+L+ MYAK    + A  +F  M  +D  S+ ++I     +G   ++L++F EM
Sbjct: 361 ADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEM 420

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQ 150
              G         G+++ CS +G +E GR+
Sbjct: 421 PKMGIEPDEVTFVGVLTACSHVGLVEEGRK 450


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  315 bits (808), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 173/502 (34%), Positives = 293/502 (58%), Gaps = 6/502 (1%)

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           AY++FD+MP R+ ++W  +I  F Q G    ++++F +M L G+V      + ++S C++
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH---HWLIALRVFEQMVIRNEVS 198
           +G L LG+Q+H+ VI  G   L V V  +L+D+Y+KC        + +VFEQM   N +S
Sbjct: 69  LGLLALGKQLHSRVIRLG-LALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMS 127

Query: 199 WTAMISGCIDSQNYDT-GIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
           WTA+I+    S   D   I+LF  M    ++P   + + VL AC  L D   G+ ++ YA
Sbjct: 128 WTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYA 187

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
              G    + +  +L+ MY   +  +  AR  F+    K++V +++I+ GY+++    EA
Sbjct: 188 VKLGIASVNCVGNSLISMYAR-SGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEA 246

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
             LF+ +    I  ++ T  ++LS       +  G  +H  ++K G   +  I NAL++M
Sbjct: 247 FLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISM 306

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           YS+CG+I ++ Q+FNEM  R+ +SWT++I+G+  HG+   AL++F +M E+G +P+ IT 
Sbjct: 307 YSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITY 366

Query: 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
           +A+LSAC+H G++ E +  FN++ KE  I   +EHYAC VDLLG+SG + +A + +++MP
Sbjct: 367 VAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMP 426

Query: 498 MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEE 557
           +     +  +L+ ACR+HG  E+    A  ++E EP++ A Y LLS + + +G W    +
Sbjct: 427 LMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVK 486

Query: 558 VWRVMRAKGLSKSYGFSRIENE 579
           + + M+ + L K  G S IE E
Sbjct: 487 IRKSMKERNLIKEAGCSWIEVE 508



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 108/379 (28%), Positives = 187/379 (49%), Gaps = 16/379 (4%)

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
           W  A +VF++M  RN V+WT MI+           IDLF  M+  G  P R T + VL A
Sbjct: 6   WAPAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSA 65

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTE--ALHPARIIFERTKVKDV 298
           C EL  L  GK +H      G   D  +  +L+ MY +C    ++  +R +FE+    +V
Sbjct: 66  CTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNV 125

Query: 299 VIWSSIIRGYSQSGDLS-EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHC 357
           + W++II  Y+QSG+   EA++LF +M    I PN  +  ++L +C   S    G  V+ 
Sbjct: 126 MSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYS 185

Query: 358 YIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEE 417
           Y +K G+     +GN+L++MY++ G +  + + F+ +  ++ VS+  ++ GY  +   EE
Sbjct: 186 YAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEE 245

Query: 418 ALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK-----EKKIALAIEH 472
           A  LF E+ ++G+   A T  ++LS     G + + E +   ++K      + I  A+  
Sbjct: 246 AFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNAL-- 303

Query: 473 YACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE-A 531
               + +  + G IE A +V + M  + +    +S+++    HG    A  + H+++E  
Sbjct: 304 ----ISMYSRCGNIEAAFQVFNEMEDR-NVISWTSMITGFAKHGFATRALEMFHKMLETG 358

Query: 532 EPENAANYTLLSMVCSESG 550
              N   Y  +   CS  G
Sbjct: 359 TKPNEITYVAVLSACSHVG 377



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 107/460 (23%), Positives = 216/460 (46%), Gaps = 19/460 (4%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           ++  SG   +     SV+ AC         G QLH   ++ G   D  +  SL+ MYAK 
Sbjct: 46  DMELSGYVPDRFTYSSVLSACTELGLLA-LGKQLHSRVIRLGLALDVCVGCSLVDMYAKC 104

Query: 77  SKP---ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVR-SLEMFREMYLCGFVLKAEL- 131
           +     + + ++F++MP  + +SW +II  + Q+G   + ++E+F +M + G +      
Sbjct: 105 AADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKM-ISGHIRPNHFS 163

Query: 132 LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM 191
            + ++  C  + +   G Q+++  +  G   ++  V  +L+ +Y++      A + F+ +
Sbjct: 164 FSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNC-VGNSLISMYARSGRMEDARKAFDIL 222

Query: 192 VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGK 251
             +N VS+ A++ G   +   +    LF  +   G+  +  T   +L   A +  +  G+
Sbjct: 223 FEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGE 282

Query: 252 AIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQS 311
            IHG     G+  +  +  AL+ MY  C   +  A  +F   + ++V+ W+S+I G+++ 
Sbjct: 283 QIHGRLLKGGYKSNQCICNALISMYSRCGN-IEAAFQVFNEMEDRNVISWTSMITGFAKH 341

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA-GLNFDVSI 370
           G  + A+++F +M     +PN +T +A+LS+C+    +S G      + K  G+   +  
Sbjct: 342 GFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEH 401

Query: 371 GNALMNMYSKCGSITSSHQIFNEMA-ARDFVSWTTLISGYGFHG---YGEEALQLFLEMQ 426
              ++++  + G +  + +  N M    D + W TL+     HG    G  A ++ LE +
Sbjct: 402 YACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQE 461

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
               +P A  +L+ L A   AG  K+   +    MKE+ +
Sbjct: 462 PD--DPAAYILLSNLHAS--AGQWKDVVKI-RKSMKERNL 496


>gi|297816638|ref|XP_002876202.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322040|gb|EFH52461.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 769

 Score =  315 bits (808), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 190/552 (34%), Positives = 299/552 (54%), Gaps = 9/552 (1%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPY 91
           S+IKACA A      G QLH   +K  S +  +  N+LI+MY +F++   A ++F  +P 
Sbjct: 170 SIIKACACA-GDVVLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASKVFYGIPA 228

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI-ISLCSQIGELELGRQ 150
           +D ISW+SII  F+Q GF   +L   +EM   G     E + G  +  CS +   + G Q
Sbjct: 229 KDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQ 288

Query: 151 IHALVIVDGSFELS--VFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCID 208
           IH L I     EL+       +L D+Y++C     A RVF Q+   +  SW  +I+G  +
Sbjct: 289 IHGLCI---KLELTGNAIAGCSLCDMYARCGFLDSARRVFNQIERPDTASWNVIIAGLAN 345

Query: 209 SQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHL 268
           +   D  + +F  M+  G  P  ++L  +L A  +   L  G  IH +   CGF  D  +
Sbjct: 346 NGYADEAVSVFSEMRNSGFIPDAISLRSLLCAQTKPMALCQGMQIHSFIIKCGFLADLSV 405

Query: 269 SAALMHMYCECTEALHPARIIFERTKVK-DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
             +L+ MY  C++ L+    +FE  + K D V W++I+    Q     E ++LF  M + 
Sbjct: 406 CNSLLTMYTFCSD-LYCCFNLFEDFRNKADSVSWNAILTACLQHEQPVEMLRLFKLMLVS 464

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
             EP+ +T+  +L  C   S L  G  VHCY  K GL  +  I N L++MY+KCGS+  +
Sbjct: 465 ECEPDHITMGNLLRGCVEISSLKLGSQVHCYSWKTGLVLEQFIKNGLIDMYAKCGSLRQA 524

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHA 447
            +IF+ M   D VSW+TLI GY   G+GEEAL LF EM+ SG+EP+ +T + +L+AC+H 
Sbjct: 525 RRIFDSMDNGDVVSWSTLIVGYAQSGFGEEALILFREMKSSGIEPNHVTFVGVLTACSHV 584

Query: 448 GLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSS 507
           GLV+E   L+  +  E  I+   EH +C VDLL ++G + +A + +  M ++P   +  +
Sbjct: 585 GLVEEGLKLYAIMQTEHGISPTKEHCSCVVDLLARAGHLNEAERFIDEMKLEPDVVVWKT 644

Query: 508 LVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567
           L+SAC+  G +++A+  A  +++ +P N+  + LL  + + SGNW  A  +   M+   +
Sbjct: 645 LLSACKTQGNVDLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWEDAALLRSSMKKHDV 704

Query: 568 SKSYGFSRIENE 579
            K  G S I+ E
Sbjct: 705 KKIPGQSWIDVE 716



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 132/496 (26%), Positives = 229/496 (46%), Gaps = 12/496 (2%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           FY + L  +      S          S+I AC+ +++    G ++H   L S    D ++
Sbjct: 43  FYREALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQ-GRKIHDHILNSNCKYDTIL 101

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
           +N ++SMY K      A ++FD MP R+ +S+ S+I  ++QNG    ++ ++ +M     
Sbjct: 102 NNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQEAEAITLYLKMLQADL 161

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVI-VDGSFELSVFVSTALLDLYSKCHHWLIA 184
           V        II  C+  G++ LG+Q+HA VI ++ S  L      AL+ +Y + +    A
Sbjct: 162 VPDQFAFGSIIKACACAGDVVLGKQLHAQVIKLESSSHL--IAQNALIAMYVRFNQMSDA 219

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV-KPTRVTLTIVLLACAE 243
            +VF  +  ++ +SW+++I+G          +   + M   GV  P        L AC+ 
Sbjct: 220 SKVFYGIPAKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSS 279

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
           L     G  IHG         +     +L  MY  C   L  AR +F + +  D   W+ 
Sbjct: 280 LLRPDYGSQIHGLCIKLELTGNAIAGCSLCDMYARCG-FLDSARRVFNQIERPDTASWNV 338

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           II G + +G   EA+ +FS MR     P++++L ++L + T+   L  G+ +H +I+K G
Sbjct: 339 IIAGLANNGYADEAVSVFSEMRNSGFIPDAISLRSLLCAQTKPMALCQGMQIHSFIIKCG 398

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFHGYGEEALQLF 422
              D+S+ N+L+ MY+ C  +     +F +   + D VSW  +++    H    E L+LF
Sbjct: 399 FLADLSVCNSLLTMYTFCSDLYCCFNLFEDFRNKADSVSWNAILTACLQHEQPVEMLRLF 458

Query: 423 LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDLL 480
             M  S  EPD IT+  +L  C     +K    +        K  L +E +     +D+ 
Sbjct: 459 KLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVH---CYSWKTGLVLEQFIKNGLIDMY 515

Query: 481 GKSGKIEDACKVVSTM 496
            K G +  A ++  +M
Sbjct: 516 AKCGSLRQARRIFDSM 531



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 93/165 (56%), Gaps = 1/165 (0%)

Query: 335 TLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEM 394
           T ++++ +C+    L+ G  +H +I+ +   +D  + N +++MY KCGS+  + ++F+ M
Sbjct: 66  TYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFM 125

Query: 395 AARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAE 454
             R+ VS+T++I+GY  +G   EA+ L+L+M ++ + PD     +I+ AC  AG V   +
Sbjct: 126 PERNLVSYTSVITGYSQNGQEAEAITLYLKMLQADLVPDQFAFGSIIKACACAGDVVLGK 185

Query: 455 TLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
            L   V+K +  +  I   A  + +  +  ++ DA KV   +P K
Sbjct: 186 QLHAQVIKLESSSHLIAQNA-LIAMYVRFNQMSDASKVFYGIPAK 229


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  315 bits (808), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 173/502 (34%), Positives = 293/502 (58%), Gaps = 6/502 (1%)

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           AY++FD+MP R+ ++W  +I  F Q G    ++++F +M L G+V      + ++S C++
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH---HWLIALRVFEQMVIRNEVS 198
           +G L LG+Q+H+ VI  G   L V V  +L+D+Y+KC        + +VFEQM   N +S
Sbjct: 64  LGLLALGKQLHSRVIRLG-LALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMS 122

Query: 199 WTAMISGCIDSQNYDT-GIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
           WTA+I+    S   D   I+LF  M    ++P   + + VL AC  L D   G+ ++ YA
Sbjct: 123 WTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYA 182

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
              G    + +  +L+ MY   +  +  AR  F+    K++V +++I+ GY+++    EA
Sbjct: 183 VKLGIASVNCVGNSLISMYAR-SGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEA 241

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
             LF+ +    I  ++ T  ++LS       +  G  +H  ++K G   +  I NAL++M
Sbjct: 242 FLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISM 301

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           YS+CG+I ++ Q+FNEM  R+ +SWT++I+G+  HG+   AL++F +M E+G +P+ IT 
Sbjct: 302 YSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITY 361

Query: 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
           +A+LSAC+H G++ E +  FN++ KE  I   +EHYAC VDLLG+SG + +A + +++MP
Sbjct: 362 VAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMP 421

Query: 498 MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEE 557
           +     +  +L+ ACR+HG  E+    A  ++E EP++ A Y LLS + + +G W    +
Sbjct: 422 LMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVK 481

Query: 558 VWRVMRAKGLSKSYGFSRIENE 579
           + + M+ + L K  G S IE E
Sbjct: 482 IRKSMKERNLIKEAGCSWIEVE 503



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 108/379 (28%), Positives = 187/379 (49%), Gaps = 16/379 (4%)

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
           W  A +VF++M  RN V+WT MI+           IDLF  M+  G  P R T + VL A
Sbjct: 1   WAPAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSA 60

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTE--ALHPARIIFERTKVKDV 298
           C EL  L  GK +H      G   D  +  +L+ MY +C    ++  +R +FE+    +V
Sbjct: 61  CTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNV 120

Query: 299 VIWSSIIRGYSQSGDLS-EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHC 357
           + W++II  Y+QSG+   EA++LF +M    I PN  +  ++L +C   S    G  V+ 
Sbjct: 121 MSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYS 180

Query: 358 YIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEE 417
           Y +K G+     +GN+L++MY++ G +  + + F+ +  ++ VS+  ++ GY  +   EE
Sbjct: 181 YAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEE 240

Query: 418 ALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK-----EKKIALAIEH 472
           A  LF E+ ++G+   A T  ++LS     G + + E +   ++K      + I  A+  
Sbjct: 241 AFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNAL-- 298

Query: 473 YACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE-A 531
               + +  + G IE A +V + M  + +    +S+++    HG    A  + H+++E  
Sbjct: 299 ----ISMYSRCGNIEAAFQVFNEMEDR-NVISWTSMITGFAKHGFATRALEMFHKMLETG 353

Query: 532 EPENAANYTLLSMVCSESG 550
              N   Y  +   CS  G
Sbjct: 354 TKPNEITYVAVLSACSHVG 372



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 107/460 (23%), Positives = 216/460 (46%), Gaps = 19/460 (4%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           ++  SG   +     SV+ AC         G QLH   ++ G   D  +  SL+ MYAK 
Sbjct: 41  DMELSGYVPDRFTYSSVLSACTELGLLA-LGKQLHSRVIRLGLALDVCVGCSLVDMYAKC 99

Query: 77  SKP---ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVR-SLEMFREMYLCGFVLKAEL- 131
           +     + + ++F++MP  + +SW +II  + Q+G   + ++E+F +M + G +      
Sbjct: 100 AADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKM-ISGHIRPNHFS 158

Query: 132 LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM 191
            + ++  C  + +   G Q+++  +  G   ++  V  +L+ +Y++      A + F+ +
Sbjct: 159 FSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNC-VGNSLISMYARSGRMEDARKAFDIL 217

Query: 192 VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGK 251
             +N VS+ A++ G   +   +    LF  +   G+  +  T   +L   A +  +  G+
Sbjct: 218 FEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGE 277

Query: 252 AIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQS 311
            IHG     G+  +  +  AL+ MY  C   +  A  +F   + ++V+ W+S+I G+++ 
Sbjct: 278 QIHGRLLKGGYKSNQCICNALISMYSRCGN-IEAAFQVFNEMEDRNVISWTSMITGFAKH 336

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA-GLNFDVSI 370
           G  + A+++F +M     +PN +T +A+LS+C+    +S G      + K  G+   +  
Sbjct: 337 GFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEH 396

Query: 371 GNALMNMYSKCGSITSSHQIFNEMA-ARDFVSWTTLISGYGFHG---YGEEALQLFLEMQ 426
              ++++  + G +  + +  N M    D + W TL+     HG    G  A ++ LE +
Sbjct: 397 YACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQE 456

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
               +P A  +L+ L A   AG  K+   +    MKE+ +
Sbjct: 457 PD--DPAAYILLSNLHAS--AGQWKDVVKI-RKSMKERNL 491


>gi|224125246|ref|XP_002319538.1| predicted protein [Populus trichocarpa]
 gi|222857914|gb|EEE95461.1| predicted protein [Populus trichocarpa]
          Length = 577

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 180/512 (35%), Positives = 282/512 (55%), Gaps = 9/512 (1%)

Query: 72  MYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV-LKAE 130
           MYAK      A +LFDEMP RDT+SWN +I+ F ++G +      F++M   GF  L   
Sbjct: 1   MYAKNGVLTDAAKLFDEMPMRDTVSWNIMISGFLKDGSFDVGFGFFKQMQSLGFYRLDQA 60

Query: 131 LLAGIISLCSQIGELELG---RQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
            L  I+S C +    ELG   + +H L +++G F+  + V  AL+  Y KC      ++V
Sbjct: 61  TLTTILSACDRP---ELGFVNKMVHCLAVLNG-FQREISVGNALITSYFKCGFSSSGMQV 116

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F++M+ RN ++WTA+ISG + S+ Y   + LF  M    V+P  +T    L+AC+ L+ L
Sbjct: 117 FDEMLERNVITWTAIISGLVQSELYRDSLRLFVEMTNGLVEPNSLTYLSSLMACSGLQAL 176

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
           R G  IHG  +  G   D  + +ALM MY +C  ++     IFE     D V  + I+ G
Sbjct: 177 REGCQIHGRVWKLGLQSDFCVESALMDMYSKCG-SMGDTLQIFESAGQLDKVSMTIILAG 235

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
           ++Q+G   EAM+ F +M     E +S  + A+L      + L  G  +H  ++K     +
Sbjct: 236 FAQNGFEEEAMQFFVKMLEAGTEIDSNMVSAVLGVFGADTSLGLGQQIHSLVIKRSFGSN 295

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
             +GN L+NMYSKCG +  S ++F+ M   + VSW ++I+ +  HG G  ALQL+ EM+ 
Sbjct: 296 PFVGNGLINMYSKCGDLEDSTKVFSRMPCMNSVSWNSMIAAFARHGDGSRALQLYKEMRL 355

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487
            GVEP  +T L++L AC+H GLV++      ++ +  K+   +EHYAC VD+LG++G + 
Sbjct: 356 KGVEPTDVTFLSLLHACSHVGLVEKGMEFLKSMTEVHKLTPRMEHYACVVDMLGRAGLLN 415

Query: 488 DACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCS 547
           +A   +  +P+KP   +  +L+ AC IHG  E+ +  A  LI + PE  + Y LL+ + S
Sbjct: 416 EAKTFIEGLPIKPDVLVWQALLGACGIHGDPEMGKYAAEHLILSAPEKPSPYILLANIYS 475

Query: 548 ESGNWLGAEEVWRVMRAKGLSKSYGFSRIENE 579
             G W    +  + M+   ++K  G S IE E
Sbjct: 476 SKGRWKERAKTIKRMKEMCVAKETGISWIEIE 507



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 110/419 (26%), Positives = 194/419 (46%), Gaps = 32/419 (7%)

Query: 14  YKQELHPSGLYS-NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISM 72
           + +++   G Y  + A L +++ AC   +        +HC A+ +G   +  + N+LI+ 
Sbjct: 45  FFKQMQSLGFYRLDQATLTTILSACDRPELG-FVNKMVHCLAVLNGFQREISVGNALITS 103

Query: 73  YAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAEL- 131
           Y K     S  Q+FDEM  R+ I+W +II+   Q+  Y  SL +F EM   G V    L 
Sbjct: 104 YFKCGFSSSGMQVFDEMLERNVITWTAIISGLVQSELYRDSLRLFVEM-TNGLVEPNSLT 162

Query: 132 -LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQ 190
            L+ +++ CS +  L  G QIH  V   G  +    V +AL+D+YSKC      L++FE 
Sbjct: 163 YLSSLMA-CSGLQALREGCQIHGRVWKLG-LQSDFCVESALMDMYSKCGSMGDTLQIFES 220

Query: 191 MVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNG 250
               ++VS T +++G   +   +  +  F  M   G +     ++ VL        L  G
Sbjct: 221 AGQLDKVSMTIILAGFAQNGFEEEAMQFFVKMLEAGTEIDSNMVSAVLGVFGADTSLGLG 280

Query: 251 KAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQ 310
           + IH       F  +  +   L++MY +C + L  +  +F R    + V W+S+I  +++
Sbjct: 281 QQIHSLVIKRSFGSNPFVGNGLINMYSKCGD-LEDSTKVFSRMPCMNSVSWNSMIAAFAR 339

Query: 311 SGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSI 370
            GD S A++L+  MRL+ +EP  VT L++L +C+           H  +++ G+ F  S+
Sbjct: 340 HGDGSRALQLYKEMRLKGVEPTDVTFLSLLHACS-----------HVGLVEKGMEFLKSM 388

Query: 371 GNA------------LMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFHGYGE 416
                          +++M  + G +  +      +  + D + W  L+   G HG  E
Sbjct: 389 TEVHKLTPRMEHYACVVDMLGRAGLLNEAKTFIEGLPIKPDVLVWQALLGACGIHGDPE 447



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 150/319 (47%), Gaps = 14/319 (4%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           +V    Y  +L L+  E+    +  N+    S + AC+  Q  +  G Q+H    K G  
Sbjct: 135 LVQSELYRDSLRLF-VEMTNGLVEPNSLTYLSSLMACSGLQALRE-GCQIHGRVWKLGLQ 192

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
           +D  + ++L+ MY+K        Q+F+     D +S   I+  F QNGF   +++ F +M
Sbjct: 193 SDFCVESALMDMYSKCGSMGDTLQIFESAGQLDKVSMTIILAGFAQNGFEEEAMQFFVKM 252

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
              G  + + +++ ++ +      L LG+QIH+LVI   SF  + FV   L+++YSKC  
Sbjct: 253 LEAGTEIDSNMVSAVLGVFGADTSLGLGQQIHSLVI-KRSFGSNPFVGNGLINMYSKCGD 311

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
              + +VF +M   N VSW +MI+      +    + L++ M+ +GV+PT VT   +L A
Sbjct: 312 LEDSTKVFSRMPCMNSVSWNSMIAAFARHGDGSRALQLYKEMRLKGVEPTDVTFLSLLHA 371

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCEC-----TEALHPARIIFERTKV 295
           C+ +     G    G  +       H L+  + H  C          L+ A+   E   +
Sbjct: 372 CSHV-----GLVEKGMEFLKSMTEVHKLTPRMEHYACVVDMLGRAGLLNEAKTFIEGLPI 426

Query: 296 K-DVVIWSSIIRGYSQSGD 313
           K DV++W +++      GD
Sbjct: 427 KPDVLVWQALLGACGIHGD 445


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 180/563 (31%), Positives = 306/563 (54%), Gaps = 9/563 (1%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
            +   G++ N     SV+ A A +Q     G ++H  ++K G  +   + NSL++MYAK 
Sbjct: 191 RMRAEGIWPNPFTFASVLSAVA-SQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKC 249

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
              E A  +F+ M  RD +SWN+++     N   + +L++F E       +     A +I
Sbjct: 250 GLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVI 309

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV-IRN 195
            LC+ + +L L RQ+H+ V+  G F L+  V TAL D YSKC     AL +F      RN
Sbjct: 310 KLCANLKQLALARQLHSCVLKHG-FHLTGNVMTALADAYSKCGELADALNIFSMTTGSRN 368

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
            VSWTA+ISGCI + +    + LF  M+ + V P   T + +L A   +   +    IH 
Sbjct: 369 VVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQ----IHA 424

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
                 +     +  AL+  Y +   +   A  IF+  + KDVV WS+++  ++Q+GD  
Sbjct: 425 QVIKTNYQHIPSVGTALLASYSK-FGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCE 483

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF-LSHGLGVHCYIMKAGLNFDVSIGNAL 374
            A  LF++M ++ I+PN  T+ +++ +C   S  +  G   H   +K   +  + + +AL
Sbjct: 484 GATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSAL 543

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           ++MYS+ G+I S+  +F     RD VSW ++ISGY  HGY  +A++ F +M+ SG++ D 
Sbjct: 544 VSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDG 603

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS 494
           +T LA++  C H GLV E +  F++++++ KI   +EHYAC VDL  ++GK+++   ++ 
Sbjct: 604 VTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIR 663

Query: 495 TMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLG 554
            MP      +  +L+ ACR+H  +E+ +  A +L+  EP +++ Y LLS + + +G W  
Sbjct: 664 DMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKE 723

Query: 555 AEEVWRVMRAKGLSKSYGFSRIE 577
            +EV ++M  + + K  G S I+
Sbjct: 724 RDEVRKLMDYRKVKKEAGCSWIQ 746



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 133/469 (28%), Positives = 223/469 (47%), Gaps = 7/469 (1%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPV-ISNSLISMYAKFSKPE 80
           G+  ++A L  V+KAC  +   +  G QLHC  +K G D   V    SL+ MY K     
Sbjct: 94  GVLVDSATLSCVLKAC-RSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVC 152

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
              ++F+ MP ++ ++W S++        +   + +F  M   G        A ++S  +
Sbjct: 153 EGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVA 212

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
             G L+LG+++HA  +  G    SVFV  +L+++Y+KC     A  VF  M  R+ VSW 
Sbjct: 213 SQGALDLGQRVHAQSVKFGC-RSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWN 271

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
            +++G   ++     + LF   +    K T+ T   V+  CA L+ L   + +H      
Sbjct: 272 TLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKH 331

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
           GF    ++  AL   Y +C E      I    T  ++VV W++II G  Q+GD+  A+ L
Sbjct: 332 GFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVL 391

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
           FSRMR +R+ PN  T  A+L    + S       +H  ++K       S+G AL+  YSK
Sbjct: 392 FSRMREDRVMPNEFTYSAML----KASLSILPPQIHAQVIKTNYQHIPSVGTALLASYSK 447

Query: 381 CGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
            GS   +  IF  +  +D V+W+ ++S +   G  E A  LF +M   G++P+  T+ ++
Sbjct: 448 FGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSV 507

Query: 441 LSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
           + AC       +    F+ +  + +   AI   +  V +  + G I+ A
Sbjct: 508 IDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSA 556



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 104/367 (28%), Positives = 178/367 (48%), Gaps = 3/367 (0%)

Query: 79  PESAYQLFDEMPYRDT-ISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS 137
           P  A    DE+P RD  +  N ++  + + G     L+ F      G ++ +  L+ ++ 
Sbjct: 48  PPGARYPLDEIPRRDAAVGANRVLFDYARRGMVPEVLDQFSVARRGGVLVDSATLSCVLK 107

Query: 138 LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197
            C  + +  LG Q+H L +  G     V   T+L+D+Y KC      + VFE M  +N V
Sbjct: 108 ACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVV 167

Query: 198 SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
           +WT++++GC  +Q +   + LF  M+ EG+ P   T   VL A A    L  G+ +H  +
Sbjct: 168 TWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQS 227

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
              G      +  +LM+MY +C   +  A+ +F   + +D+V W++++ G   +    EA
Sbjct: 228 VKFGCRSSVFVCNSLMNMYAKCG-LVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEA 286

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
           ++LF   R    +    T   ++  C     L+    +H  ++K G +   ++  AL + 
Sbjct: 287 LQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADA 346

Query: 378 YSKCGSITSSHQIFN-EMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAIT 436
           YSKCG +  +  IF+    +R+ VSWT +ISG   +G    A+ LF  M+E  V P+  T
Sbjct: 347 YSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFT 406

Query: 437 VLAILSA 443
             A+L A
Sbjct: 407 YSAMLKA 413



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 150/316 (47%), Gaps = 3/316 (0%)

Query: 216 IDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDH-HLSAALMH 274
           +D F   +R GV     TL+ VL AC  + D   G+ +H     CG D        +L+ 
Sbjct: 84  LDQFSVARRGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVD 143

Query: 275 MYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSV 334
           MY +C        + FE    K+VV W+S++ G + +   SE M LF RMR E I PN  
Sbjct: 144 MYMKCGSVCEGIEV-FEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPF 202

Query: 335 TLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEM 394
           T  ++LS+   Q  L  G  VH   +K G    V + N+LMNMY+KCG +  +  +FN M
Sbjct: 203 TFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWM 262

Query: 395 AARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAE 454
             RD VSW TL++G   +    EALQLF E + +  +    T   ++  C +   +  A 
Sbjct: 263 ETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALAR 322

Query: 455 TLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRI 514
            L + V+K     L         D   K G++ DA  + S      +    ++++S C  
Sbjct: 323 QLHSCVLKH-GFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQ 381

Query: 515 HGRLEVAEMLAHQLIE 530
           +G + +A +L  ++ E
Sbjct: 382 NGDIPLAVVLFSRMRE 397


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 185/572 (32%), Positives = 302/572 (52%), Gaps = 39/572 (6%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           FYE  L         SG+  N   L S++ AC   +     G  +H   +K G D DP  
Sbjct: 246 FYEMVL---------SGIKPNEFSLSSMVNACTGLRDSSR-GKIIHGYLIKLGYDWDPFS 295

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
           +N+L+ MYAK      A  +F+++   D +SWN++I     +  + ++LE+  +M     
Sbjct: 296 ANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQM----- 350

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
                                  RQ+H+  ++    E  +FVS  L+D+YSKC     A 
Sbjct: 351 ----------------------KRQLHS-SLMKMDMESDLFVSVGLVDMYSKCDLLEDAR 387

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
             F  +  ++ ++W A+ISG          + LF  M +EG+   + TL+ +L + A L+
Sbjct: 388 MAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQ 447

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
            +   + +HG +   GF  D ++  +L+  Y +C+  +  A  IFE   + D+V ++S+I
Sbjct: 448 VVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSH-VEDAERIFEECTIGDLVSFTSMI 506

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
             Y+Q G   EA+KLF  M+   ++P+     ++L++C   S    G  +H +I+K G  
Sbjct: 507 TAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFV 566

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            D+  GN+L+NMY+KCGSI  + + F+E+  R  VSW+ +I G   HG+G +ALQLF +M
Sbjct: 567 LDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQM 626

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
            + GV P+ IT++++L ACNHAGLV EA+  F ++ +        EHYAC +DLLG++GK
Sbjct: 627 LKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGK 686

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV 545
           I +A ++V+ MP + +  +  +L+ A RIH  +E+    A  L   EPE +  + LL+ +
Sbjct: 687 INEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANI 746

Query: 546 CSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            + +G W    EV R+MR   + K  G S IE
Sbjct: 747 YASAGKWENVAEVRRLMRDSKVKKEPGMSWIE 778



 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 157/537 (29%), Positives = 277/537 (51%), Gaps = 35/537 (6%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
            E+H  G+  N     SV+KAC+  +  +  G Q+H   + SG + D  ++N+L+ MYAK
Sbjct: 146 HEMHLLGVKCNEFTFSSVLKACSIVKDLR-IGKQVHGVVVVSGFEGDVFVANTLVVMYAK 204

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
             +   + +LFDE+P R+ +SWN++ +C+ Q  F   ++ +F EM L G       L+ +
Sbjct: 205 CDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSM 264

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           ++ C+ + +   G+ IH  +I  G ++   F + AL+D+Y+K      A+ VFE++   +
Sbjct: 265 VNACTGLRDSSRGKIIHGYLIKLG-YDWDPFSANALVDMYAKVGDLADAISVFEKIKQPD 323

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
            VSW A+I+GC+  ++++  ++L   M+R+                           +H 
Sbjct: 324 IVSWNAVIAGCVLHEHHEQALELLGQMKRQ---------------------------LHS 356

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
                  + D  +S  L+ MY +C + L  AR+ F     KD++ W++II GYSQ  +  
Sbjct: 357 SLMKMDMESDLFVSVGLVDMYSKC-DLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDM 415

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           EA+ LF  M  E I  N  TL  IL S      +     VH   +K+G + D+ + N+L+
Sbjct: 416 EALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLI 475

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           + Y KC  +  + +IF E    D VS+T++I+ Y  +G GEEAL+LFLEMQ+  ++PD  
Sbjct: 476 DSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRF 535

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
              ++L+AC +    ++ + L  +++K     L I      V++  K G I+DA +  S 
Sbjct: 536 VCSSLLNACANLSAFEQGKQLHVHILK-YGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSE 594

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV--CSESG 550
           +  +      S+++     HG    A  L +Q+++ E  +  + TL+S++  C+ +G
Sbjct: 595 LTERGIVS-WSAMIGGLAQHGHGRQALQLFNQMLK-EGVSPNHITLVSVLGACNHAG 649



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 151/509 (29%), Positives = 244/509 (47%), Gaps = 82/509 (16%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           GLQ+H    KSG   DP I N LI++Y+K      A +L DE    D +SW+++I+ + Q
Sbjct: 75  GLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQ 134

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           NG    +L  F EM+L G        + ++  CS + +L +G+Q+H +V+V G FE  VF
Sbjct: 135 NGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSG-FEGDVF 193

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           V+  L+ +Y+KC  +L + R+F+++  RN VSW A+ S  +        + LF  M   G
Sbjct: 194 VANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSG 253

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           +KP   +L+ ++ AC  LRD   GK IHGY    G+D+D   + AL+ MY +  + L  A
Sbjct: 254 IKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGD-LADA 312

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
             +FE+ K  D+V W+++I G        +A++L  +M+                   RQ
Sbjct: 313 ISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMK-------------------RQ 353

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
                   +H  +MK  +  D+ +   L++MYSKC  +  +   FN +  +D ++W  +I
Sbjct: 354 --------LHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAII 405

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA----------------------- 443
           SGY  +    EAL LF+EM + G+  +  T+  IL +                       
Sbjct: 406 SGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFH 465

Query: 444 ---------------CNHAGLVKEAETLFNNVMKEKKIALA--IEHYACYVDLLGKSGKI 486
                          C+H   V++AE +F        ++    I  YA Y       G+ 
Sbjct: 466 SDIYVVNSLIDSYGKCSH---VEDAERIFEECTIGDLVSFTSMITAYAQY-------GQG 515

Query: 487 EDACKV---VSTMPMKPSTRILSSLVSAC 512
           E+A K+   +  M +KP   + SSL++AC
Sbjct: 516 EEALKLFLEMQDMELKPDRFVCSSLLNAC 544



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 175/341 (51%), Gaps = 10/341 (2%)

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           ++S C     L  G QIHA +   G       +   L++LYSKC  +  A ++ ++    
Sbjct: 62  LLSQCCTTKSLRPGLQIHAHITKSG-LSDDPSIRNHLINLYSKCRXFGYARKLVDESSEP 120

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
           + VSW+A+ISG   +      +  F  M   GVK    T + VL AC+ ++DLR GK +H
Sbjct: 121 DLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVH 180

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
           G     GF+ D  ++  L+ MY +C E L   R+ F+    ++VV W+++   Y Q    
Sbjct: 181 GVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRL-FDEIPERNVVSWNALFSCYVQXDFC 239

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
            EA+ LF  M L  I+PN  +L +++++CT     S G  +H Y++K G ++D    NAL
Sbjct: 240 GEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANAL 299

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES------ 428
           ++MY+K G +  +  +F ++   D VSW  +I+G   H + E+AL+L  +M+        
Sbjct: 300 VDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQLHSSLM 359

Query: 429 --GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIA 467
              +E D    + ++   +   L+++A   FN + ++  IA
Sbjct: 360 KMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIA 400



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 152/313 (48%), Gaps = 7/313 (2%)

Query: 218 LFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYC 277
           +   + +    PT V+ + +L  C   + LR G  IH +    G   D  +   L+++Y 
Sbjct: 43  ILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYS 102

Query: 278 ECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLL 337
           +C      AR + + +   D+V WS++I GY+Q+G    A+  F  M L  ++ N  T  
Sbjct: 103 KC-RXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFS 161

Query: 338 AILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR 397
           ++L +C+    L  G  VH  ++ +G   DV + N L+ MY+KC     S ++F+E+  R
Sbjct: 162 SVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPER 221

Query: 398 DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLF 457
           + VSW  L S Y    +  EA+ LF EM  SG++P+  ++ ++++AC         + + 
Sbjct: 222 NVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIH 281

Query: 458 NNVMKEKKIALAIEHYA--CYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIH 515
             ++   K+    + ++    VD+  K G + DA  V   +  +P     +++++ C +H
Sbjct: 282 GYLI---KLGYDWDPFSANALVDMYAKVGDLADAISVFEKIK-QPDIVSWNAVIAGCVLH 337

Query: 516 GRLEVAEMLAHQL 528
              E A  L  Q+
Sbjct: 338 EHHEQALELLGQM 350


>gi|242062998|ref|XP_002452788.1| hypothetical protein SORBIDRAFT_04g032540 [Sorghum bicolor]
 gi|241932619|gb|EES05764.1| hypothetical protein SORBIDRAFT_04g032540 [Sorghum bicolor]
          Length = 662

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 182/574 (31%), Positives = 298/574 (51%), Gaps = 11/574 (1%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           F  Q L LY Q      L    A      KACA  +  +H G  +H  AL +G   D  +
Sbjct: 92  FNRQALALYSQMRAFDHLTFTFAA-----KACADLRRRRH-GRAVHGRALTAGFGGDGYV 145

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
            N+L+SMY +     SA  +F  +  R T+SWN++I    ++G   R+LE+F  M   G 
Sbjct: 146 QNALVSMYMRCRDVVSAEAVFGALRSRTTVSWNTVITGCVKDGRAERALEVFETMVGRGV 205

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
            +    +  ++  C+Q  +L +GR +H L +V G    +  V  AL+D+Y KC     A 
Sbjct: 206 CIDRATVVSVLPACAQARDLHMGRAVHRLAVVRGLGNYAA-VKNALIDMYGKCRSLEDAK 264

Query: 186 RVF-EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM-QREGVKPTRVTLTIVLLACAE 243
           RVF E    ++ VSWTAMI   + + +      L   M      +P  VT+  +L AC  
Sbjct: 265 RVFDEDSYDKDVVSWTAMIGAYVLNDHASKAFALGSEMLVTSEAQPNAVTMVHLLSACTS 324

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
           L   ++ K  H      G   D  +  AL+  Y +C   +    ++ E+   +    W++
Sbjct: 325 LLSGKHAKCTHALCIRLGLGSDTVVETALVDCYAKCGY-MGMIDMVVEKGS-RRTETWNA 382

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
            I GY+      +A+ LF +M  E + P+S T+ +++ +    + L     +HC ++  G
Sbjct: 383 AISGYTHREQGKKALALFKQMLAESVRPDSATMASVIPAYAESADLVQAKNIHCCLLIRG 442

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
                 I   L+N+Y+K G +  + ++F  +  +D V+WTT+I+GYG HG+ + A+ L+ 
Sbjct: 443 CLGSTDIATGLINVYAKAGDLGVAWELFQCLPEKDVVAWTTVIAGYGMHGHAQTAILLYS 502

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS 483
            M E GV P+ +T+ +++ +C+HAG+V E   LFN++     +    EHY C VD+LG++
Sbjct: 503 RMIEMGVTPNTVTMASLMYSCSHAGMVDEGLRLFNDMRGVHGLMPNAEHYLCLVDMLGRA 562

Query: 484 GKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLS 543
           G+IE+A +++  MP +PST + S+L+ AC +H  +E  E+ A  L E EP+N  NY LL 
Sbjct: 563 GRIEEAYRLIQDMPFEPSTSVWSALLGACVLHENVEFGEVAAKHLFELEPDNVGNYVLLG 622

Query: 544 MVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            V + +  W   +++WRVM  +GL K  G S ++
Sbjct: 623 KVYAAADRWSDVQDLWRVMEGRGLHKDPGSSVVD 656



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 125/283 (44%), Gaps = 16/283 (5%)

Query: 272 LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP 331
           L+  YC C        ++ +  +   V + ++++R Y+  G   +A+ L+S+MR      
Sbjct: 51  LLGSYCACGRPFDAHNLLVQMPQPPPVSVSNTLLRSYTGLGFNRQALALYSQMR----AF 106

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIF 391
           + +T      +C       HG  VH   + AG   D  + NAL++MY +C  + S+  +F
Sbjct: 107 DHLTFTFAAKACADLRRRRHGRAVHGRALTAGFGGDGYVQNALVSMYMRCRDVVSAEAVF 166

Query: 392 NEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVK 451
             + +R  VSW T+I+G    G  E AL++F  M   GV  D  TV+++L AC  A    
Sbjct: 167 GALRSRTTVSWNTVITGCVKDGRAERALEVFETMVGRGVCIDRATVVSVLPACAQA---- 222

Query: 452 EAETLFNNVMKEKKIALAIEHYACY----VDLLGKSGKIEDACKVVSTMPMKPSTRILSS 507
             +      +    +   + +YA      +D+ GK   +EDA +V             ++
Sbjct: 223 -RDLHMGRAVHRLAVVRGLGNYAAVKNALIDMYGKCRSLEDAKRVFDEDSYDKDVVSWTA 281

Query: 508 LVSACRIHGRLEVAEMLAHQLI---EAEPENAANYTLLSMVCS 547
           ++ A  ++     A  L  +++   EA+P       LLS   S
Sbjct: 282 MIGAYVLNDHASKAFALGSEMLVTSEAQPNAVTMVHLLSACTS 324


>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
          Length = 863

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 183/576 (31%), Positives = 308/576 (53%), Gaps = 4/576 (0%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V    Y + L L+  E+   GL  +     S  ++CA A +  + G QLH  A+K+   +
Sbjct: 226 VQNEQYVRGLELFI-EMQRLGLGVSQPSYASAFRSCA-AMSCLNTGRQLHAHAIKNKFSS 283

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D V+  +++ +YAK +    A + F  +P     + N+++    + G  + ++ +F+ M 
Sbjct: 284 DRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMI 343

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
                     L+G+ S C++      G+Q+H L I  G F++ + V+ A+LDLY KC   
Sbjct: 344 RSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSG-FDVDICVNNAVLDLYGKCKAL 402

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
           + A  +F+ M  ++ VSW A+I+    + +YD  I  F  M R G+KP   T   VL AC
Sbjct: 403 MEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKAC 462

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A LR L  G  +H      G   D  +++ ++ MYC+C   +  A+ + +R   + VV W
Sbjct: 463 AALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCG-IIDEAQKLHDRIGGQQVVSW 521

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           ++I+ G+S + +  EA K FS M    ++P+  T   +L +C   + +  G  +H  I+K
Sbjct: 522 NAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIK 581

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
             +  D  I + L++MY+KCG +  S  +F ++  RDFVSW  +I GY  HG G EAL++
Sbjct: 582 QEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRM 641

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
           F  MQ+  V P+  T +A+L AC+H GL  +    F+ +    K+   +EH+AC VD+LG
Sbjct: 642 FERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILG 701

Query: 482 KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTL 541
           +S   ++A K +++MP +    I  +L+S C+I   +E+AE+ A  ++  +P++++ Y L
Sbjct: 702 RSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLDPDDSSVYIL 761

Query: 542 LSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           LS V +ESG W       R+++   L K  G S IE
Sbjct: 762 LSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIE 797



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 149/550 (27%), Positives = 270/550 (49%), Gaps = 11/550 (2%)

Query: 4   KHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADP 63
           +  +++++ L+  E+   G+  +      ++K+C+ A      G+Q+H  A+K+G + D 
Sbjct: 127 RGMFQESVDLFV-EMARRGVSPDRTTFAVLLKSCS-ALEELSLGVQVHALAVKTGLEIDV 184

Query: 64  VISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC 123
              ++L+ MY K    + A   F  MP R+ +SW + I    QN  YVR LE+F EM   
Sbjct: 185 RTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRL 244

Query: 124 GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
           G  +     A     C+ +  L  GRQ+HA  I +  F     V TA++D+Y+K +    
Sbjct: 245 GLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKN-KFSSDRVVGTAIVDVYAKANSLTD 303

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
           A R F  +      +  AM+ G + +      + LF+ M R  ++   V+L+ V  ACAE
Sbjct: 304 ARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAE 363

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
            +    G+ +H  A   GFD D  ++ A++ +Y +C +AL  A +IF+  K KD V W++
Sbjct: 364 TKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKC-KALMEAYLIFQGMKQKDSVSWNA 422

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           II    Q+G   + +  F+ M    ++P+  T  ++L +C     L +GL VH  ++K+G
Sbjct: 423 IIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSG 482

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
           L  D  + + +++MY KCG I  + ++ + +  +  VSW  ++SG+  +   EEA + F 
Sbjct: 483 LGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFS 542

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDLLG 481
           EM + G++PD  T   +L  C +   ++  + +   ++K++ +    + Y  +  VD+  
Sbjct: 543 EMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLD---DEYISSTLVDMYA 599

Query: 482 KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG-RLEVAEMLAHQLIEAEPENAANYT 540
           K G + D+  V   +  +      ++++    +HG  +E   M      E    N A + 
Sbjct: 600 KCGDMPDSLLVFEKVEKRDFVS-WNAMICGYALHGLGVEALRMFERMQKENVVPNHATFV 658

Query: 541 LLSMVCSESG 550
            +   CS  G
Sbjct: 659 AVLRACSHVG 668



 Score =  211 bits (537), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 131/433 (30%), Positives = 224/433 (51%), Gaps = 7/433 (1%)

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D V  N++++ Y+      +A  LFD MP  D +SWN++++ + Q G +  S+++F EM 
Sbjct: 82  DTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMA 141

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
             G        A ++  CS + EL LG Q+HAL +  G  E+ V   +AL+D+Y KC   
Sbjct: 142 RRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTG-LEIDVRTGSALVDMYGKCRSL 200

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             AL  F  M  RN VSW A I+GC+ ++ Y  G++LF  MQR G+  ++ +      +C
Sbjct: 201 DDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSC 260

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A +  L  G+ +H +A    F  D  +  A++ +Y +   +L  AR  F       V   
Sbjct: 261 AAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAK-ANSLTDARRAFFGLPNHTVETS 319

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           ++++ G  ++G   EAM LF  M    I  + V+L  + S+C        G  VHC  +K
Sbjct: 320 NAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIK 379

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
           +G + D+ + NA++++Y KC ++  ++ IF  M  +D VSW  +I+    +G+ ++ +  
Sbjct: 380 SGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILH 439

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDL 479
           F EM   G++PD  T  ++L AC     ++    + + V+K     L  + +  +  VD+
Sbjct: 440 FNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKS---GLGSDAFVASTVVDM 496

Query: 480 LGKSGKIEDACKV 492
             K G I++A K+
Sbjct: 497 YCKCGIIDEAQKL 509



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 148/342 (43%), Gaps = 33/342 (9%)

Query: 135 IISLCSQIG-ELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI 193
           +   C+Q G E     +     +V   F  + FVS  LL +Y++C     A RVF+ M  
Sbjct: 21  VFQSCAQAGREALAAGRAAHARMVVSGFVPNAFVSNCLLQMYARCAGAACARRVFDAMPR 80

Query: 194 RNE-------------------------------VSWTAMISGCIDSQNYDTGIDLFRAM 222
           R+                                VSW A++SG      +   +DLF  M
Sbjct: 81  RDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEM 140

Query: 223 QREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEA 282
            R GV P R T  ++L +C+ L +L  G  +H  A   G + D    +AL+ MY +C  +
Sbjct: 141 ARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKC-RS 199

Query: 283 LHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSS 342
           L  A   F     ++ V W + I G  Q+      ++LF  M+   +  +  +  +   S
Sbjct: 200 LDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRS 259

Query: 343 CTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSW 402
           C   S L+ G  +H + +K   + D  +G A++++Y+K  S+T + + F  +      + 
Sbjct: 260 CAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETS 319

Query: 403 TTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
             ++ G    G G EA+ LF  M  S +  D +++  + SAC
Sbjct: 320 NAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSAC 361



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 113/234 (48%), Gaps = 14/234 (5%)

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           A  +F+     DVV W++++ GY Q G   E++ LF  M    + P+  T   +L SC+ 
Sbjct: 102 AVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSA 161

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
              LS G+ VH   +K GL  DV  G+AL++MY KC S+  +   F  M  R++VSW   
Sbjct: 162 LEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAA 221

Query: 406 ISGYGFHGYGEEALQLFLEMQESGV---EPDAITVLAILSA--CNHAGLVKEAETLFNNV 460
           I+G   +      L+LF+EMQ  G+   +P   +     +A  C + G    A  + N  
Sbjct: 222 IAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKF 281

Query: 461 MKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP---MKPSTRILSSLVSA 511
             ++ +  AI      VD+  K+  + DA +    +P   ++ S  ++  LV A
Sbjct: 282 SSDRVVGTAI------VDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRA 329



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 84/204 (41%), Gaps = 34/204 (16%)

Query: 329 IEPNSVTLLAILSSCTR--QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITS 386
           + P  VT   +  SC +  +  L+ G   H  ++ +G   +  + N L+ MY++C     
Sbjct: 11  VAPARVTFSRVFQSCAQAGREALAAGRAAHARMVVSGFVPNAFVSNCLLQMYARCAGAAC 70

Query: 387 SHQIFNEMAARDFVSWTT-------------------------------LISGYGFHGYG 415
           + ++F+ M  RD VSW T                               L+SGY   G  
Sbjct: 71  ARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMF 130

Query: 416 EEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC 475
           +E++ LF+EM   GV PD  T   +L +C+    +     +    +K   + + +   + 
Sbjct: 131 QESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVK-TGLEIDVRTGSA 189

Query: 476 YVDLLGKSGKIEDACKVVSTMPMK 499
            VD+ GK   ++DA      MP +
Sbjct: 190 LVDMYGKCRSLDDALCFFYGMPER 213


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 180/563 (31%), Positives = 306/563 (54%), Gaps = 9/563 (1%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
            +   G++ N     SV+ A A +Q     G ++H  ++K G  +   + NSL++MYAK 
Sbjct: 191 RMRAEGIWPNPFTFASVLSAVA-SQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKC 249

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
              E A  +F+ M  RD +SWN+++     N   + +L++F E       +     A +I
Sbjct: 250 GLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVI 309

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV-IRN 195
            LC+ + +L L RQ+H+ V+  G F L+  V TAL D YSKC     AL +F      RN
Sbjct: 310 KLCANLKQLALARQLHSCVLKHG-FHLTGNVMTALADAYSKCGELADALNIFSMTTGSRN 368

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
            VSWTA+ISGCI + +    + LF  M+ + V P   T + +L A   +   +    IH 
Sbjct: 369 VVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQ----IHA 424

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
                 +     +  AL+  Y +   +   A  IF+  + KDVV WS+++  ++Q+GD  
Sbjct: 425 QVIKTNYQHIPFVGTALLASYSK-FGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCE 483

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF-LSHGLGVHCYIMKAGLNFDVSIGNAL 374
            A  LF++M ++ I+PN  T+ +++ +C   S  +  G   H   +K   +  + + +AL
Sbjct: 484 GATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSAL 543

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           ++MYS+ G+I S+  +F     RD VSW ++ISGY  HGY  +A++ F +M+ SG++ D 
Sbjct: 544 VSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDG 603

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS 494
           +T LA++  C H GLV E +  F++++++ KI   +EHYAC VDL  ++GK+++   ++ 
Sbjct: 604 VTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIR 663

Query: 495 TMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLG 554
            MP      +  +L+ ACR+H  +E+ +  A +L+  EP +++ Y LLS + + +G W  
Sbjct: 664 DMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKE 723

Query: 555 AEEVWRVMRAKGLSKSYGFSRIE 577
            +EV ++M  + + K  G S I+
Sbjct: 724 RDEVRKLMDYRKVKKEAGCSWIQ 746



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 132/469 (28%), Positives = 222/469 (47%), Gaps = 7/469 (1%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPV-ISNSLISMYAKFSKPE 80
           G+  ++A L  V+KAC  +   +  G QLHC  +K G D   V    SL+ MY K     
Sbjct: 94  GVLVDSATLSCVLKAC-RSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVC 152

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
              ++F+ MP ++ ++W S++        +   + +F  M   G        A ++S  +
Sbjct: 153 EGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVA 212

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
             G L+LG+++HA  +  G    SVFV  +L+++Y+KC     A  VF  M  R+ VSW 
Sbjct: 213 SQGALDLGQRVHAQSVKFGC-RSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWN 271

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
            +++G   ++     + LF   +    K T+ T   V+  CA L+ L   + +H      
Sbjct: 272 TLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKH 331

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
           GF    ++  AL   Y +C E      I    T  ++VV W++II G  Q+GD+  A+ L
Sbjct: 332 GFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVL 391

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
           FSRMR +R+ PN  T  A+L    + S       +H  ++K        +G AL+  YSK
Sbjct: 392 FSRMREDRVMPNEFTYSAML----KASLSILPPQIHAQVIKTNYQHIPFVGTALLASYSK 447

Query: 381 CGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
            GS   +  IF  +  +D V+W+ ++S +   G  E A  LF +M   G++P+  T+ ++
Sbjct: 448 FGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSV 507

Query: 441 LSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
           + AC       +    F+ +  + +   AI   +  V +  + G I+ A
Sbjct: 508 IDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSA 556



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 104/367 (28%), Positives = 179/367 (48%), Gaps = 3/367 (0%)

Query: 79  PESAYQLFDEMPYRDT-ISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS 137
           P  A    DE+P RD  +  N ++  + + G  +  L+ F      G ++ +  L+ ++ 
Sbjct: 48  PPGARYPLDEIPRRDAAVGANRVLFDYARRGMVLEVLDQFSVARRGGVLVDSATLSCVLK 107

Query: 138 LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197
            C  + +  LG Q+H L +  G     V   T+L+D+Y KC      + VFE M  +N V
Sbjct: 108 ACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVV 167

Query: 198 SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
           +WT++++GC  +Q +   + LF  M+ EG+ P   T   VL A A    L  G+ +H  +
Sbjct: 168 TWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQS 227

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
              G      +  +LM+MY +C   +  A+ +F   + +D+V W++++ G   +    EA
Sbjct: 228 VKFGCRSSVFVCNSLMNMYAKCG-LVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEA 286

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
           ++LF   R    +    T   ++  C     L+    +H  ++K G +   ++  AL + 
Sbjct: 287 LQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADA 346

Query: 378 YSKCGSITSSHQIFN-EMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAIT 436
           YSKCG +  +  IF+    +R+ VSWT +ISG   +G    A+ LF  M+E  V P+  T
Sbjct: 347 YSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFT 406

Query: 437 VLAILSA 443
             A+L A
Sbjct: 407 YSAMLKA 413



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 150/316 (47%), Gaps = 3/316 (0%)

Query: 216 IDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDH-HLSAALMH 274
           +D F   +R GV     TL+ VL AC  + D   G+ +H     CG D        +L+ 
Sbjct: 84  LDQFSVARRGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVD 143

Query: 275 MYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSV 334
           MY +C        + FE    K+VV W+S++ G + +   SE M LF RMR E I PN  
Sbjct: 144 MYMKCGSVCEGIEV-FEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPF 202

Query: 335 TLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEM 394
           T  ++LS+   Q  L  G  VH   +K G    V + N+LMNMY+KCG +  +  +FN M
Sbjct: 203 TFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWM 262

Query: 395 AARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAE 454
             RD VSW TL++G   +    EALQLF E + +  +    T   ++  C +   +  A 
Sbjct: 263 ETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALAR 322

Query: 455 TLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRI 514
            L + V+K     L         D   K G++ DA  + S      +    ++++S C  
Sbjct: 323 QLHSCVLKH-GFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQ 381

Query: 515 HGRLEVAEMLAHQLIE 530
           +G + +A +L  ++ E
Sbjct: 382 NGDIPLAVVLFSRMRE 397


>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240 [Vitis vinifera]
          Length = 565

 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 165/504 (32%), Positives = 286/504 (56%), Gaps = 10/504 (1%)

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A  +F+++       WNS+I  ++ +     +L M+REM   G+         ++  CS 
Sbjct: 58  AKSVFNQIDRPSLYIWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSL 117

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
           +    LG+ +H  ++  G FE+ V+ +TALL +Y+ C     AL+VF+ +   N V+WT+
Sbjct: 118 VNGYNLGQCVHNCIVKTG-FEVDVYAATALLQMYAACGDMEAALKVFDDIPKWNVVAWTS 176

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           +I+GCI +      + +++ M+   V P  +T+  VL+ACA  RDL  G+ +H      G
Sbjct: 177 LIAGCISNDCPSEAVRVYKDMELWSVAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMG 236

Query: 262 FD-------FDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
            D       F+  L+ A++ MY +C  +L  AR +F +   +++V W+S+I  Y+Q G  
Sbjct: 237 LDPFQSNSNFNVILATAIVDMYAKCG-SLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQA 295

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
           +EA+ LFS MR+   +P+  T L ++ +C     L  G  +H Y+ K  L  D +IG AL
Sbjct: 296 NEALDLFSDMRIAGFDPDKATFLCVIGACAHLGALVSGQALHAYVSKTNLTDDTAIGTAL 355

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE-SGVEPD 433
           ++MY+K G    + Q+F+E+  +D  +WT+LI G   HG+GEEAL  F +MQE + + PD
Sbjct: 356 VDMYAKSGDAERAQQVFSELQKKDVTAWTSLIIGLAMHGHGEEALTFFKKMQEDTALIPD 415

Query: 434 AITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVV 493
            IT + +LSAC+H G V++ +  F ++     I    +HY C VDLL ++G++ +A ++V
Sbjct: 416 EITYIGVLSACSHVGKVEDGKNHFISMKNVHGIEPTTQHYGCMVDLLSRAGRLGEAERLV 475

Query: 494 STMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWL 553
             MP++P+T I S+L++ C+I+  ++VA+ +  ++ E E + +  Y LLS + + +  W 
Sbjct: 476 EKMPVEPNTAIWSALLNGCKIYQNIDVADRVRRRVRELEVDGSGVYVLLSNIYAGACRWE 535

Query: 554 GAEEVWRVMRAKGLSKSYGFSRIE 577
             +    +M+ + + KS G S +E
Sbjct: 536 EVKMARELMKERKIQKSLGHSSVE 559



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 119/484 (24%), Positives = 231/484 (47%), Gaps = 16/484 (3%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           ++ L +Y+ E+   G   +    P V+KAC+    + + G  +H   +K+G + D   + 
Sbjct: 87  DEALTMYR-EMRQKGYAPDHFTFPFVLKACSLVNGY-NLGQCVHNCIVKTGFEVDVYAAT 144

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +L+ MYA     E+A ++FD++P  + ++W S+I     N     ++ ++++M L     
Sbjct: 145 ALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDCPSEAVRVYKDMELWSVAP 204

Query: 128 KAELLAGIISLCSQIGELELGRQIH------ALVIVDGSFELSVFVSTALLDLYSKCHHW 181
               +  ++  C++  +L  GR +H       L     +   +V ++TA++D+Y+KC   
Sbjct: 205 NEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNSNFNVILATAIVDMYAKCGSL 264

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             A  +F +M  RN V+W +MI         +  +DLF  M+  G  P + T   V+ AC
Sbjct: 265 KTARDLFNKMPHRNLVAWNSMIGAYNQYGQANEALDLFSDMRIAGFDPDKATFLCVIGAC 324

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A L  L +G+A+H Y        D  +  AL+ MY +  +A   A+ +F   + KDV  W
Sbjct: 325 AHLGALVSGQALHAYVSKTNLTDDTAIGTALVDMYAKSGDA-ERAQQVFSELQKKDVTAW 383

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLER-IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           +S+I G +  G   EA+  F +M+ +  + P+ +T + +LS+C+    +  G   H   M
Sbjct: 384 TSLIIGLAMHGHGEEALTFFKKMQEDTALIPDEITYIGVLSACSHVGKVEDGKN-HFISM 442

Query: 361 KA--GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS-WTTLISGYGFHGYGEE 417
           K   G+         ++++ S+ G +  + ++  +M      + W+ L++G   +   + 
Sbjct: 443 KNVHGIEPTTQHYGCMVDLLSRAGRLGEAERLVEKMPVEPNTAIWSALLNGCKIYQNIDV 502

Query: 418 ALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYV 477
           A ++   ++E  +E D   V  +LS         E   +   +MKE+KI  ++ H +  +
Sbjct: 503 ADRVRRRVRE--LEVDGSGVYVLLSNIYAGACRWEEVKMARELMKERKIQKSLGHSSVEM 560

Query: 478 DLLG 481
            +L 
Sbjct: 561 KMLA 564


>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
 gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
          Length = 863

 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 183/576 (31%), Positives = 308/576 (53%), Gaps = 4/576 (0%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V    Y + L L+  E+   GL  +     S  ++CA A +  + G QLH  A+K+   +
Sbjct: 226 VQNEQYVRGLELFI-EMQRLGLGVSQPSYASAFRSCA-AMSCLNTGRQLHAHAIKNKFSS 283

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D V+  +++ +YAK +    A + F  +P     + N+++    + G  + ++ +F+ M 
Sbjct: 284 DRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMI 343

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
                     L+G+ S C++      G+Q+H L I  G F++ + V+ A+LDLY KC   
Sbjct: 344 RSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSG-FDVDICVNNAVLDLYGKCKAL 402

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
           + A  +F+ M  ++ VSW A+I+    + +YD  I  F  M R G+KP   T   VL AC
Sbjct: 403 MEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKAC 462

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A LR L  G  +H      G   D  +++ ++ MYC+C   +  A+ + +R   + VV W
Sbjct: 463 AALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCG-IIDEAQKLHDRIGGQQVVSW 521

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           ++I+ G+S + +  EA K FS M    ++P+  T   +L +C   + +  G  +H  I+K
Sbjct: 522 NAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIK 581

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
             +  D  I + L++MY+KCG +  S  +F ++  RDFVSW  +I GY  HG G EAL++
Sbjct: 582 QEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRM 641

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
           F  MQ+  V P+  T +A+L AC+H GL  +    F+ +    K+   +EH+AC VD+LG
Sbjct: 642 FERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILG 701

Query: 482 KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTL 541
           +S   ++A K +++MP +    I  +L+S C+I   +E+AE+ A  ++  +P++++ Y L
Sbjct: 702 RSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLDPDDSSVYIL 761

Query: 542 LSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           LS V +ESG W       R+++   L K  G S IE
Sbjct: 762 LSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIE 797



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 149/550 (27%), Positives = 270/550 (49%), Gaps = 11/550 (2%)

Query: 4   KHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADP 63
           +  +++++ L+  E+   G+  +      ++K+C+ A      G+Q+H  A+K+G + D 
Sbjct: 127 RGMFQESVDLFV-EMARRGVSPDRTTFAVLLKSCS-ALEELSLGVQVHALAVKTGLEIDV 184

Query: 64  VISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC 123
              ++L+ MY K    + A   F  MP R+ +SW + I    QN  YVR LE+F EM   
Sbjct: 185 RTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRL 244

Query: 124 GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
           G  +     A     C+ +  L  GRQ+HA  I +  F     V TA++D+Y+K +    
Sbjct: 245 GLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKN-KFSSDRVVGTAIVDVYAKANSLTD 303

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
           A R F  +      +  AM+ G + +      + LF+ M R  ++   V+L+ V  ACAE
Sbjct: 304 ARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAE 363

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
            +    G+ +H  A   GFD D  ++ A++ +Y +C +AL  A +IF+  K KD V W++
Sbjct: 364 TKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKC-KALMEAYLIFQGMKQKDSVSWNA 422

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           II    Q+G   + +  F+ M    ++P+  T  ++L +C     L +GL VH  ++K+G
Sbjct: 423 IIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSG 482

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
           L  D  + + +++MY KCG I  + ++ + +  +  VSW  ++SG+  +   EEA + F 
Sbjct: 483 LGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFS 542

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDLLG 481
           EM + G++PD  T   +L  C +   ++  + +   ++K++ +    + Y  +  VD+  
Sbjct: 543 EMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLD---DEYISSTLVDMYA 599

Query: 482 KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG-RLEVAEMLAHQLIEAEPENAANYT 540
           K G + D+  V   +  +      ++++    +HG  +E   M      E    N A + 
Sbjct: 600 KCGDMPDSLLVFEKVEKRDFVS-WNAMICGYALHGLGVEALRMFERMQKENVVPNHATFV 658

Query: 541 LLSMVCSESG 550
            +   CS  G
Sbjct: 659 AVLRACSHVG 668



 Score =  211 bits (537), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 131/433 (30%), Positives = 224/433 (51%), Gaps = 7/433 (1%)

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D V  N++++ Y+      +A  LFD MP  D +SWN++++ + Q G +  S+++F EM 
Sbjct: 82  DTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMA 141

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
             G        A ++  CS + EL LG Q+HAL +  G  E+ V   +AL+D+Y KC   
Sbjct: 142 RRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTG-LEIDVRTGSALVDMYGKCRSL 200

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             AL  F  M  RN VSW A I+GC+ ++ Y  G++LF  MQR G+  ++ +      +C
Sbjct: 201 DDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSC 260

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A +  L  G+ +H +A    F  D  +  A++ +Y +   +L  AR  F       V   
Sbjct: 261 AAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAK-ANSLTDARRAFFGLPNHTVETS 319

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           ++++ G  ++G   EAM LF  M    I  + V+L  + S+C        G  VHC  +K
Sbjct: 320 NAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIK 379

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
           +G + D+ + NA++++Y KC ++  ++ IF  M  +D VSW  +I+    +G+ ++ +  
Sbjct: 380 SGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILH 439

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDL 479
           F EM   G++PD  T  ++L AC     ++    + + V+K     L  + +  +  VD+
Sbjct: 440 FNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKS---GLGSDAFVASTVVDM 496

Query: 480 LGKSGKIEDACKV 492
             K G I++A K+
Sbjct: 497 YCKCGIIDEAQKL 509



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 148/342 (43%), Gaps = 33/342 (9%)

Query: 135 IISLCSQIG-ELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI 193
           +   C+Q G E     +     +V   F  + FVS  LL +Y++C     A RVF+ M  
Sbjct: 21  VFQSCAQAGREALAAGRAAHARMVVSGFVPTAFVSNCLLQMYARCAGAACARRVFDAMPR 80

Query: 194 RNE-------------------------------VSWTAMISGCIDSQNYDTGIDLFRAM 222
           R+                                VSW A++SG      +   +DLF  M
Sbjct: 81  RDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEM 140

Query: 223 QREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEA 282
            R GV P R T  ++L +C+ L +L  G  +H  A   G + D    +AL+ MY +C  +
Sbjct: 141 ARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKC-RS 199

Query: 283 LHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSS 342
           L  A   F     ++ V W + I G  Q+      ++LF  M+   +  +  +  +   S
Sbjct: 200 LDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRS 259

Query: 343 CTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSW 402
           C   S L+ G  +H + +K   + D  +G A++++Y+K  S+T + + F  +      + 
Sbjct: 260 CAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETS 319

Query: 403 TTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
             ++ G    G G EA+ LF  M  S +  D +++  + SAC
Sbjct: 320 NAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSAC 361



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 113/234 (48%), Gaps = 14/234 (5%)

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           A  +F+     DVV W++++ GY Q G   E++ LF  M    + P+  T   +L SC+ 
Sbjct: 102 AVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSA 161

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
              LS G+ VH   +K GL  DV  G+AL++MY KC S+  +   F  M  R++VSW   
Sbjct: 162 LEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAA 221

Query: 406 ISGYGFHGYGEEALQLFLEMQESGV---EPDAITVLAILSA--CNHAGLVKEAETLFNNV 460
           I+G   +      L+LF+EMQ  G+   +P   +     +A  C + G    A  + N  
Sbjct: 222 IAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKF 281

Query: 461 MKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP---MKPSTRILSSLVSA 511
             ++ +  AI      VD+  K+  + DA +    +P   ++ S  ++  LV A
Sbjct: 282 SSDRVVGTAI------VDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRA 329



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 83/204 (40%), Gaps = 34/204 (16%)

Query: 329 IEPNSVTLLAILSSCTR--QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITS 386
           + P  VT   +  SC +  +  L+ G   H  ++ +G      + N L+ MY++C     
Sbjct: 11  VAPARVTFSRVFQSCAQAGREALAAGRAAHARMVVSGFVPTAFVSNCLLQMYARCAGAAC 70

Query: 387 SHQIFNEMAARDFVSWTT-------------------------------LISGYGFHGYG 415
           + ++F+ M  RD VSW T                               L+SGY   G  
Sbjct: 71  ARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMF 130

Query: 416 EEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC 475
           +E++ LF+EM   GV PD  T   +L +C+    +     +    +K   + + +   + 
Sbjct: 131 QESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVK-TGLEIDVRTGSA 189

Query: 476 YVDLLGKSGKIEDACKVVSTMPMK 499
            VD+ GK   ++DA      MP +
Sbjct: 190 LVDMYGKCRSLDDALCFFYGMPER 213


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 178/548 (32%), Positives = 293/548 (53%), Gaps = 5/548 (0%)

Query: 33   VIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYR 92
            +I + A        G Q+H   +KS       +SNSL++MY+K     +A + F   P  
Sbjct: 899  IILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPEL 958

Query: 93   DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELE---LGR 149
            D ISWN++I+ + QN   + ++  FR++   G       LA ++  CS   E E   LG 
Sbjct: 959  DLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGS 1018

Query: 150  QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
            Q+H   I  G    S FVSTAL+DLYSK      A  +       +  SW A++ G I S
Sbjct: 1019 QVHVYAIKCGIINDS-FVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKS 1077

Query: 210  QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS 269
                  ++ F  M   G+    +TL   + A   L +L+ GK I  YA   GF+ D  +S
Sbjct: 1078 NKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVS 1137

Query: 270  AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
            + ++ MY +C + +  A  +F      D V W+++I GY ++GD   A+ ++  MR+  +
Sbjct: 1138 SGVLDMYIKCGD-MPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGV 1196

Query: 330  EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
            +P+  T   ++ + +  + L  G  +H  ++K   + D  +G +L++MY KCGS+  +++
Sbjct: 1197 QPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYR 1256

Query: 390  IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL 449
            +F +M  R  V W  ++ G   HG+ +EAL LF  MQ +G++PD +T + +LSAC+H+GL
Sbjct: 1257 VFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGL 1316

Query: 450  VKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLV 509
              EA   F+ + K   I   IEHY+C VD LG++G+I++A  V+++MP K S  +  +L+
Sbjct: 1317 FSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALL 1376

Query: 510  SACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSK 569
             ACR  G  E A+ +A +L+  +P +++ Y LLS + + S  W    +   +M+ K + K
Sbjct: 1377 GACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKK 1436

Query: 570  SYGFSRIE 577
              GFS I+
Sbjct: 1437 DPGFSWID 1444



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 129/462 (27%), Positives = 214/462 (46%), Gaps = 40/462 (8%)

Query: 38   AYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISW 97
            A A      G + H   + SG   D  ++N+LI+MY+K     SA Q+FD+   RD ++W
Sbjct: 621  AIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTW 680

Query: 98   NSIINCFTQ--NGFYVRSLEMFREMYLC---GFVLKAELLAGIISLCSQIGELELGRQIH 152
            NSI+  + Q  +  Y   LE FR   L    GF +    LA ++ LC   G +++   +H
Sbjct: 681  NSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVH 740

Query: 153  ALVIVDGSFELSVFVSTALLDLYSKCHHWLI--ALRVFEQMVIRNEVSWTAMISGCIDSQ 210
               +  G FEL +FVS AL+++Y  C + L+  A  +F++M  R+ V W  M+   +++ 
Sbjct: 741  GYAVKIG-FELDLFVSGALVNIY--CKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENS 797

Query: 211  NYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSA 270
              D  +  F A  R G  P    L  V+       D+ N +  H             + A
Sbjct: 798  FQDEALRFFSAFHRSGFFPDFSNLHCVIGGVNS--DVSNNRKRHA----------EQVKA 845

Query: 271  ALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE 330
              M M              F   +  ++  W+  +  +  +G +  A+  F  +    I 
Sbjct: 846  YAMKM--------------FPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIG 891

Query: 331  PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQI 390
             +SVTL+ ILS+      L  G  +H  ++K+     V + N+LMNMYSK G + ++ + 
Sbjct: 892  HDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKT 951

Query: 391  FNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLV 450
            F      D +SW T+IS Y  +    EA+  F ++   G++PD  T+ ++L AC+  G  
Sbjct: 952  FINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACS-TGDE 1010

Query: 451  KEAETLFNNV-MKEKKIALAIEHY--ACYVDLLGKSGKIEDA 489
             E  TL + V +   K  +  + +     +DL  K GK+++A
Sbjct: 1011 GEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEA 1052



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 77/158 (48%), Gaps = 10/158 (6%)

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
           L  G   H  I+ +G   D  + N L+ MYSKCGS+ S+ Q+F++ + RD V+W ++++ 
Sbjct: 627 LKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAA 686

Query: 409 YGFHGYGE-----EALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKE 463
           Y            E  +LF  ++E G     +T+  +L  C  +G V+ +ET+    +  
Sbjct: 687 YAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAV-- 744

Query: 464 KKIALAIEHY--ACYVDLLGKSGKIEDACKVVSTMPMK 499
            KI   ++ +     V++  K G +  A  +   MP +
Sbjct: 745 -KIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPER 781


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 178/548 (32%), Positives = 293/548 (53%), Gaps = 5/548 (0%)

Query: 33   VIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYR 92
            +I + A        G Q+H   +KS       +SNSL++MY+K     +A + F   P  
Sbjct: 899  IILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPEL 958

Query: 93   DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELE---LGR 149
            D ISWN++I+ + QN   + ++  FR++   G       LA ++  CS   E E   LG 
Sbjct: 959  DLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGS 1018

Query: 150  QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
            Q+H   I  G    S FVSTAL+DLYSK      A  +       +  SW A++ G I S
Sbjct: 1019 QVHVYAIKCGIINDS-FVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKS 1077

Query: 210  QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS 269
                  ++ F  M   G+    +TL   + A   L +L+ GK I  YA   GF+ D  +S
Sbjct: 1078 NKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVS 1137

Query: 270  AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
            + ++ MY +C + +  A  +F      D V W+++I GY ++GD   A+ ++  MR+  +
Sbjct: 1138 SGVLDMYIKCGD-MPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGV 1196

Query: 330  EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
            +P+  T   ++ + +  + L  G  +H  ++K   + D  +G +L++MY KCGS+  +++
Sbjct: 1197 QPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYR 1256

Query: 390  IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL 449
            +F +M  R  V W  ++ G   HG+ +EAL LF  MQ +G++PD +T + +LSAC+H+GL
Sbjct: 1257 VFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGL 1316

Query: 450  VKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLV 509
              EA   F+ + K   I   IEHY+C VD LG++G+I++A  V+++MP K S  +  +L+
Sbjct: 1317 FSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALL 1376

Query: 510  SACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSK 569
             ACR  G  E A+ +A +L+  +P +++ Y LLS + + S  W    +   +M+ K + K
Sbjct: 1377 GACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKK 1436

Query: 570  SYGFSRIE 577
              GFS I+
Sbjct: 1437 DPGFSWID 1444



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 129/462 (27%), Positives = 214/462 (46%), Gaps = 40/462 (8%)

Query: 38   AYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISW 97
            A A      G + H   + SG   D  ++N+LI+MY+K     SA Q+FD+   RD ++W
Sbjct: 621  AIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTW 680

Query: 98   NSIINCFTQ--NGFYVRSLEMFREMYLC---GFVLKAELLAGIISLCSQIGELELGRQIH 152
            NSI+  + Q  +  Y   LE FR   L    GF +    LA ++ LC   G +++   +H
Sbjct: 681  NSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVH 740

Query: 153  ALVIVDGSFELSVFVSTALLDLYSKCHHWLI--ALRVFEQMVIRNEVSWTAMISGCIDSQ 210
               +  G FEL +FVS AL+++Y  C + L+  A  +F++M  R+ V W  M+   +++ 
Sbjct: 741  GYAVKIG-FELDLFVSGALVNIY--CKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENS 797

Query: 211  NYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSA 270
              D  +  F A  R G  P    L  V+       D+ N +  H             + A
Sbjct: 798  FQDEALRFFSAFHRSGFXPDFSNLHCVIGGVNS--DVSNNRKRHA----------EQVKA 845

Query: 271  ALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE 330
              M M              F   +  ++  W+  +  +  +G +  A+  F  +    I 
Sbjct: 846  YAMKM--------------FPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIG 891

Query: 331  PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQI 390
             +SVTL+ ILS+      L  G  +H  ++K+     V + N+LMNMYSK G + ++ + 
Sbjct: 892  HDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKT 951

Query: 391  FNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLV 450
            F      D +SW T+IS Y  +    EA+  F ++   G++PD  T+ ++L AC+  G  
Sbjct: 952  FINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACS-TGDE 1010

Query: 451  KEAETLFNNV-MKEKKIALAIEHY--ACYVDLLGKSGKIEDA 489
             E  TL + V +   K  +  + +     +DL  K GK+++A
Sbjct: 1011 GEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEA 1052



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 77/158 (48%), Gaps = 10/158 (6%)

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
           L  G   H  I+ +G   D  + N L+ MYSKCGS+ S+ Q+F++ + RD V+W ++++ 
Sbjct: 627 LKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAA 686

Query: 409 YGFHGYGE-----EALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKE 463
           Y            E  +LF  ++E G     +T+  +L  C  +G V+ +ET+    +  
Sbjct: 687 YAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAV-- 744

Query: 464 KKIALAIEHY--ACYVDLLGKSGKIEDACKVVSTMPMK 499
            KI   ++ +     V++  K G +  A  +   MP +
Sbjct: 745 -KIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPER 781


>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
 gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 905

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 183/576 (31%), Positives = 308/576 (53%), Gaps = 4/576 (0%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V    Y + L L+  E+   GL  +     S  ++CA A +  + G QLH  A+K+   +
Sbjct: 268 VQNEQYVRGLELFI-EMQRLGLGVSQPSYASAFRSCA-AMSCLNTGRQLHAHAIKNKFSS 325

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D V+  +++ +YAK +    A + F  +P     + N+++    + G  + ++ +F+ M 
Sbjct: 326 DRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMI 385

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
                     L+G+ S C++      G+Q+H L I  G F++ + V+ A+LDLY KC   
Sbjct: 386 RSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSG-FDVDICVNNAVLDLYGKCKAL 444

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
           + A  +F+ M  ++ VSW A+I+    + +YD  I  F  M R G+KP   T   VL AC
Sbjct: 445 MEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKAC 504

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A LR L  G  +H      G   D  +++ ++ MYC+C   +  A+ + +R   + VV W
Sbjct: 505 AALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCG-IIDEAQKLHDRIGGQQVVSW 563

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           ++I+ G+S + +  EA K FS M    ++P+  T   +L +C   + +  G  +H  I+K
Sbjct: 564 NAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIK 623

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
             +  D  I + L++MY+KCG +  S  +F ++  RDFVSW  +I GY  HG G EAL++
Sbjct: 624 QEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRM 683

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
           F  MQ+  V P+  T +A+L AC+H GL  +    F+ +    K+   +EH+AC VD+LG
Sbjct: 684 FERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILG 743

Query: 482 KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTL 541
           +S   ++A K +++MP +    I  +L+S C+I   +E+AE+ A  ++  +P++++ Y L
Sbjct: 744 RSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLDPDDSSVYIL 803

Query: 542 LSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           LS V +ESG W       R+++   L K  G S IE
Sbjct: 804 LSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIE 839



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 149/550 (27%), Positives = 270/550 (49%), Gaps = 11/550 (2%)

Query: 4   KHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADP 63
           +  +++++ L+  E+   G+  +      ++K+C+ A      G+Q+H  A+K+G + D 
Sbjct: 169 RGMFQESVDLFV-EMARRGVSPDRTTFAVLLKSCS-ALEELSLGVQVHALAVKTGLEIDV 226

Query: 64  VISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC 123
              ++L+ MY K    + A   F  MP R+ +SW + I    QN  YVR LE+F EM   
Sbjct: 227 RTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRL 286

Query: 124 GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
           G  +     A     C+ +  L  GRQ+HA  I +  F     V TA++D+Y+K +    
Sbjct: 287 GLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKN-KFSSDRVVGTAIVDVYAKANSLTD 345

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
           A R F  +      +  AM+ G + +      + LF+ M R  ++   V+L+ V  ACAE
Sbjct: 346 ARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAE 405

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
            +    G+ +H  A   GFD D  ++ A++ +Y +C +AL  A +IF+  K KD V W++
Sbjct: 406 TKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKC-KALMEAYLIFQGMKQKDSVSWNA 464

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           II    Q+G   + +  F+ M    ++P+  T  ++L +C     L +GL VH  ++K+G
Sbjct: 465 IIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSG 524

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
           L  D  + + +++MY KCG I  + ++ + +  +  VSW  ++SG+  +   EEA + F 
Sbjct: 525 LGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFS 584

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDLLG 481
           EM + G++PD  T   +L  C +   ++  + +   ++K++ +    + Y  +  VD+  
Sbjct: 585 EMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLD---DEYISSTLVDMYA 641

Query: 482 KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG-RLEVAEMLAHQLIEAEPENAANYT 540
           K G + D+  V   +  +      ++++    +HG  +E   M      E    N A + 
Sbjct: 642 KCGDMPDSLLVFEKVEKRDFVS-WNAMICGYALHGLGVEALRMFERMQKENVVPNHATFV 700

Query: 541 LLSMVCSESG 550
            +   CS  G
Sbjct: 701 AVLRACSHVG 710



 Score =  211 bits (538), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 131/433 (30%), Positives = 224/433 (51%), Gaps = 7/433 (1%)

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D V  N++++ Y+      +A  LFD MP  D +SWN++++ + Q G +  S+++F EM 
Sbjct: 124 DTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMA 183

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
             G        A ++  CS + EL LG Q+HAL +  G  E+ V   +AL+D+Y KC   
Sbjct: 184 RRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTG-LEIDVRTGSALVDMYGKCRSL 242

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             AL  F  M  RN VSW A I+GC+ ++ Y  G++LF  MQR G+  ++ +      +C
Sbjct: 243 DDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSC 302

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A +  L  G+ +H +A    F  D  +  A++ +Y +   +L  AR  F       V   
Sbjct: 303 AAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAK-ANSLTDARRAFFGLPNHTVETS 361

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           ++++ G  ++G   EAM LF  M    I  + V+L  + S+C        G  VHC  +K
Sbjct: 362 NAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIK 421

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
           +G + D+ + NA++++Y KC ++  ++ IF  M  +D VSW  +I+    +G+ ++ +  
Sbjct: 422 SGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILH 481

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDL 479
           F EM   G++PD  T  ++L AC     ++    + + V+K     L  + +  +  VD+
Sbjct: 482 FNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKS---GLGSDAFVASTVVDM 538

Query: 480 LGKSGKIEDACKV 492
             K G I++A K+
Sbjct: 539 YCKCGIIDEAQKL 551



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 148/342 (43%), Gaps = 33/342 (9%)

Query: 135 IISLCSQIG-ELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI 193
           +   C+Q G E     +     +V   F  + FVS  LL +Y++C     A RVF+ M  
Sbjct: 63  VFQSCAQAGREALAAGRAAHARMVVSGFVPTAFVSNCLLQMYARCAGAACARRVFDAMPR 122

Query: 194 RNE-------------------------------VSWTAMISGCIDSQNYDTGIDLFRAM 222
           R+                                VSW A++SG      +   +DLF  M
Sbjct: 123 RDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEM 182

Query: 223 QREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEA 282
            R GV P R T  ++L +C+ L +L  G  +H  A   G + D    +AL+ MY +C  +
Sbjct: 183 ARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKC-RS 241

Query: 283 LHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSS 342
           L  A   F     ++ V W + I G  Q+      ++LF  M+   +  +  +  +   S
Sbjct: 242 LDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRS 301

Query: 343 CTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSW 402
           C   S L+ G  +H + +K   + D  +G A++++Y+K  S+T + + F  +      + 
Sbjct: 302 CAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETS 361

Query: 403 TTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
             ++ G    G G EA+ LF  M  S +  D +++  + SAC
Sbjct: 362 NAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSAC 403



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 112/231 (48%), Gaps = 14/231 (6%)

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
           +F+     DVV W++++ GY Q G   E++ LF  M    + P+  T   +L SC+    
Sbjct: 147 LFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEE 206

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
           LS G+ VH   +K GL  DV  G+AL++MY KC S+  +   F  M  R++VSW   I+G
Sbjct: 207 LSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAG 266

Query: 409 YGFHGYGEEALQLFLEMQESGV---EPDAITVLAILSA--CNHAGLVKEAETLFNNVMKE 463
              +      L+LF+EMQ  G+   +P   +     +A  C + G    A  + N    +
Sbjct: 267 CVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSD 326

Query: 464 KKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP---MKPSTRILSSLVSA 511
           + +  AI      VD+  K+  + DA +    +P   ++ S  ++  LV A
Sbjct: 327 RVVGTAI------VDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRA 371



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 83/204 (40%), Gaps = 34/204 (16%)

Query: 329 IEPNSVTLLAILSSCTR--QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITS 386
           + P  VT   +  SC +  +  L+ G   H  ++ +G      + N L+ MY++C     
Sbjct: 53  VAPARVTFSRVFQSCAQAGREALAAGRAAHARMVVSGFVPTAFVSNCLLQMYARCAGAAC 112

Query: 387 SHQIFNEMAARDFVSWTT-------------------------------LISGYGFHGYG 415
           + ++F+ M  RD VSW T                               L+SGY   G  
Sbjct: 113 ARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMF 172

Query: 416 EEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC 475
           +E++ LF+EM   GV PD  T   +L +C+    +     +    +K   + + +   + 
Sbjct: 173 QESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVK-TGLEIDVRTGSA 231

Query: 476 YVDLLGKSGKIEDACKVVSTMPMK 499
            VD+ GK   ++DA      MP +
Sbjct: 232 LVDMYGKCRSLDDALCFFYGMPER 255


>gi|224106429|ref|XP_002314162.1| predicted protein [Populus trichocarpa]
 gi|222850570|gb|EEE88117.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 177/563 (31%), Positives = 313/563 (55%), Gaps = 11/563 (1%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           E    G  SN   L  ++  CA + +  H G+Q H T LK G  ++  I ++++ MYAK 
Sbjct: 59  EFTRHGSLSNPYFLNKIVSFCAKSGSF-HLGIQAHSTILKLGFISNVYICSAVVDMYAKC 117

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
            +  SA  LFD+MP R  ++WNS+I  +        ++E+F +M      + A  ++  +
Sbjct: 118 GEISSARVLFDQMPQRTVVTWNSLIYGYLAVNCPKIAIELFIKMLKAAINVSAFSVSSCL 177

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
           + CSQ+   E+G Q+H L++  G    +V V T+L+D+YSKC     +  VF+ MV RN 
Sbjct: 178 AGCSQLEAREVGTQVHGLILKTG-LGYNVVVGTSLVDMYSKCGDVDDSRLVFDHMVNRNV 236

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           ++WT+M++G    +  D  + L + M  + ++P  VT   +L + +    L     +H  
Sbjct: 237 ITWTSMVTGYSQIEKPDEAMALVKEMVLQDLRPNCVTYNSLLSSFSGPDCLSYCLQVH-- 294

Query: 257 AYCC----GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSG 312
             CC    G + + +++A L+ +Y +C+ +L   + +       D + W+++I GYS+ G
Sbjct: 295 --CCIIQLGLESNVYIAATLVTVYSKCSSSLEDFKKVCSVVMTCDNIAWNAVIAGYSKLG 352

Query: 313 DLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN 372
              EA++ F  M+   I+ +S TL +++ +    SFL  G  +H  I + G    +++ N
Sbjct: 353 RHEEALRCFHEMKQAGIDIDSYTLTSVVGAIGNSSFLEEGKAMHALIHRTGYISHLNVQN 412

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
            L++MY++CG+I  S ++F  M   D +SW  L++ +  HGYG EA++LF +M+++ ++P
Sbjct: 413 GLVSMYARCGAIGDSKRVFWFMEEHDVISWNALLTAFAHHGYGREAVELFEQMRKTEIKP 472

Query: 433 DAITVLAILSACNHAGLVKEAETLFNNVMKEKKI-ALAIEHYACYVDLLGKSGKIEDACK 491
           ++ T LA+L AC+H G V +    F+ +  +  +  L +EHYA  VD  G++G + +A  
Sbjct: 473 NSSTFLAVLCACSHVGFVDKGIEYFDTMKSDILLEPLKVEHYASLVDTFGRAGYLNEAEA 532

Query: 492 VVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGN 551
            +++MP+ P+  +  +L+SA  +HG  E+A   A +L+E  P + A Y LLS V +  GN
Sbjct: 533 FINSMPIVPAPSVYKALLSASLVHGNREIAARSAKKLLELWPNDPATYVLLSSVLTVDGN 592

Query: 552 WLGAEEVWRVMRAKGLSKSYGFS 574
           W  A ++ ++M  +GL K  G+S
Sbjct: 593 WDDAADLRKLMCDRGLRKKPGYS 615



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 125/237 (52%), Gaps = 3/237 (1%)

Query: 209 SQNYDTGID--LFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDH 266
           +QN  + +D  L     R G       L  ++  CA+      G   H      GF  + 
Sbjct: 45  NQNTSSPVDSDLIAEFTRHGSLSNPYFLNKIVSFCAKSGSFHLGIQAHSTILKLGFISNV 104

Query: 267 HLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRL 326
           ++ +A++ MY +C E +  AR++F++   + VV W+S+I GY        A++LF +M  
Sbjct: 105 YICSAVVDMYAKCGE-ISSARVLFDQMPQRTVVTWNSLIYGYLAVNCPKIAIELFIKMLK 163

Query: 327 ERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITS 386
             I  ++ ++ + L+ C++      G  VH  I+K GL ++V +G +L++MYSKCG +  
Sbjct: 164 AAINVSAFSVSSCLAGCSQLEAREVGTQVHGLILKTGLGYNVVVGTSLVDMYSKCGDVDD 223

Query: 387 SHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
           S  +F+ M  R+ ++WT++++GY      +EA+ L  EM    + P+ +T  ++LS+
Sbjct: 224 SRLVFDHMVNRNVITWTSMVTGYSQIEKPDEAMALVKEMVLQDLRPNCVTYNSLLSS 280


>gi|224126745|ref|XP_002319916.1| predicted protein [Populus trichocarpa]
 gi|222858292|gb|EEE95839.1| predicted protein [Populus trichocarpa]
          Length = 606

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 177/550 (32%), Positives = 304/550 (55%), Gaps = 11/550 (2%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE--SAYQLFDEM 89
           S+++ C  A +  H G+Q H  A+KSG D D  + NSL+++Y K   P    A ++FD +
Sbjct: 65  SLLQTCTKAVSFTH-GIQFHSHAIKSGLDTDRFVGNSLLALYFKLG-PNLFEARRVFDGL 122

Query: 90  PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGR 149
            Y+D ISW S+I  + +     +SLE+F EM   G       L+ +I  CS +G+L LG+
Sbjct: 123 FYKDLISWTSMITGYVKVEKPKKSLELFLEMLGLGIEPNGFTLSAVIKACSGLGDLRLGK 182

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
             H +V+V G F+L+  +STAL+D+Y +      A+ VF ++   + + WT++IS    +
Sbjct: 183 CFHGVVMVRG-FDLNDVISTALIDMYGRNSAVDDAILVFVELPQPDAICWTSIISAFTRN 241

Query: 210 QNYDTGIDLFRAMQRE-GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHL 268
             YD  +  F +M R+ G+ P   T   VL AC  L  L+ GK +H      G   +  +
Sbjct: 242 DVYDKALGFFYSMCRKHGLSPDGFTFGTVLTACGNLGRLKQGKEVHAKVITSGLSGNVFV 301

Query: 269 SAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER 328
            ++L+ MY +C   ++ ++ +F+R  VK++V W++++ GY Q+GD    +++F     E 
Sbjct: 302 ESSLVDMYGKC-RLVNQSQCVFDRMSVKNLVSWTALLGGYCQNGDFESVIRIFR----EG 356

Query: 329 IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSH 388
            + ++ +   +L +C   + +  G  VHC  +K     DV   +AL+++Y+KCG I  ++
Sbjct: 357 KKVDTYSFGTVLRACAGLAAVRQGKEVHCQYVKRCCWRDVVTESALVDLYAKCGCIDFAY 416

Query: 389 QIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG 448
           +IF  M+ R+ ++W ++I G+  +G G E  QLF EM E G+ PD I+ + +L AC+HAG
Sbjct: 417 RIFVRMSVRNLITWNSMIYGFAQNGRGGEVFQLFDEMIEEGIRPDYISFVGVLFACSHAG 476

Query: 449 LVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSL 508
           LV + +  F  + +  +I   IEHY C +DLLG++G +E+A  ++     +    + + L
Sbjct: 477 LVDQGKKYFAAMTEVYEIKPGIEHYNCMIDLLGRAGLLEEAENLIENANCRDEPSLWTVL 536

Query: 509 VSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLS 568
           + AC        AE +A + +E +P++  +Y  L+ V    G W  A ++  +M  +G+ 
Sbjct: 537 LGACAASPHSATAERIAKKAVELKPDHHLSYVYLANVYRAVGRWDDAVKIRNLMTKRGVG 596

Query: 569 KSYGFSRIEN 578
           K  G S IE 
Sbjct: 597 KMPGTSWIET 606



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 117/205 (57%), Gaps = 3/205 (1%)

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
           Y +SG L EA+ + + +   R+        ++L +CT+    +HG+  H + +K+GL+ D
Sbjct: 35  YCKSGSLFEAIHVLNSIDWTRLSNKPFFYASLLQTCTKAVSFTHGIQFHSHAIKSGLDTD 94

Query: 368 VSIGNALMNMYSKCG-SITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
             +GN+L+ +Y K G ++  + ++F+ +  +D +SWT++I+GY      +++L+LFLEM 
Sbjct: 95  RFVGNSLLALYFKLGPNLFEARRVFDGLFYKDLISWTSMITGYVKVEKPKKSLELFLEML 154

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
             G+EP+  T+ A++ AC+  G ++  +  F+ V+  +   L        +D+ G++  +
Sbjct: 155 GLGIEPNGFTLSAVIKACSGLGDLRLGKC-FHGVVMVRGFDLNDVISTALIDMYGRNSAV 213

Query: 487 EDACKVVSTMPMKPSTRILSSLVSA 511
           +DA  V   +P +P     +S++SA
Sbjct: 214 DDAILVFVELP-QPDAICWTSIISA 237


>gi|224127716|ref|XP_002320145.1| predicted protein [Populus trichocarpa]
 gi|222860918|gb|EEE98460.1| predicted protein [Populus trichocarpa]
          Length = 548

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 180/527 (34%), Positives = 295/527 (55%), Gaps = 13/527 (2%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSII----N 102
           G Q+H   +K G      + N ++++Y K      A++LFDEM  R+ ++WN++I    +
Sbjct: 7   GKQVHSHVIKLGFCNVLSLQNQILNVYIKCKDFNYAHRLFDEMHVRNVVTWNTVICGLVD 66

Query: 103 CFTQNGFYVRSLEM----FREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVD 158
           C   +  Y  S+ M    FR+M L      A  L G++  C ++ ++E+GR++H  ++  
Sbjct: 67  CRGSD--YESSVYMGFCYFRKMLLDKVGFDAITLNGLLRACLELNDVEIGRELHCFIVKL 124

Query: 159 GSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDL 218
           G F ++ FV++AL+DLY KC     A R F+++  R+ V W  M+S    +   +     
Sbjct: 125 G-FAVNSFVNSALVDLYGKCGLVKEARRAFDEVYCRDLVLWNVMLSCYAMNCLAEEASGF 183

Query: 219 FRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCE 278
           F+ MQ E       T + +L +C  L     G+ IHG +    FD D  +++ L+ MY +
Sbjct: 184 FKLMQEENFMTDGFTFSSMLNSCGTLGSCNLGRQIHGLSIKLSFDLDVLVASGLVDMYAK 243

Query: 279 CTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLA 338
            +E +  AR  F+    ++VV W++++ GY + GD  EAMKL   M  E + P+ +TL +
Sbjct: 244 -SENIDDARKAFDGMAARNVVSWNTMVVGYGRLGDGGEAMKLLIGMFQEDLRPDEITLAS 302

Query: 339 ILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARD 398
           I+ SC+        + V+ Y++K G +  +SI NAL+N YSK GSI  + Q FN +   D
Sbjct: 303 IIRSCSSALTSCEIMQVNAYVLKNGFHAFLSIANALINAYSKGGSIAMALQCFNTVLEPD 362

Query: 399 FVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFN 458
            V+WT+LI  Y FH   + ++  F EM   GV PD I  L +LSAC+HAGLV E    F 
Sbjct: 363 LVTWTSLIGAYAFHSLPKNSIDTFEEMLADGVWPDQIVFLEVLSACSHAGLVNEGLHYF- 421

Query: 459 NVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRL 518
           ++MK+  I   +EHY C +DLLG++G +++A  ++++M +  S+  L + + AC+IHG +
Sbjct: 422 SLMKDYHILPGLEHYTCLIDLLGRAGLLDEAFNILNSMSIGYSSDTLGAFIGACKIHGDV 481

Query: 519 EVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAK 565
           ++A+  A +L E EP    NYTL+S V +  G+W     + ++MR +
Sbjct: 482 KLAKWAAEKLFEMEPNKPVNYTLMSSVFASEGHWHDVARIHKLMRDR 528



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 134/284 (47%), Gaps = 8/284 (2%)

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII- 305
           LR GK +H +    GF     L   ++++Y +C +  +  R +F+   V++VV W+++I 
Sbjct: 4   LREGKQVHSHVIKLGFCNVLSLQNQILNVYIKCKDFNYAHR-LFDEMHVRNVVTWNTVIC 62

Query: 306 -----RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
                RG      +      F +M L+++  +++TL  +L +C   + +  G  +HC+I+
Sbjct: 63  GLVDCRGSDYESSVYMGFCYFRKMLLDKVGFDAITLNGLLRACLELNDVEIGRELHCFIV 122

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
           K G   +  + +AL+++Y KCG +  + + F+E+  RD V W  ++S Y  +   EEA  
Sbjct: 123 KLGFAVNSFVNSALVDLYGKCGLVKEARRAFDEVYCRDLVLWNVMLSCYAMNCLAEEASG 182

Query: 421 LFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLL 480
            F  MQE     D  T  ++L++C   G       +    +K     L +   +  VD+ 
Sbjct: 183 FFKLMQEENFMTDGFTFSSMLNSCGTLGSCNLGRQIHGLSIK-LSFDLDVLVASGLVDMY 241

Query: 481 GKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEML 524
            KS  I+DA K    M  +      + +V   R+    E  ++L
Sbjct: 242 AKSENIDDARKAFDGMAARNVVSWNTMVVGYGRLGDGGEAMKLL 285



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 144/309 (46%), Gaps = 25/309 (8%)

Query: 45  HFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCF 104
           + G Q+H  ++K   D D ++++ L+ MYAK    + A + FD M  R+ +SWN+++  +
Sbjct: 213 NLGRQIHGLSIKLSFDLDVLVASGLVDMYAKSENIDDARKAFDGMAARNVVSWNTMVVGY 272

Query: 105 TQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ-IGELELGRQIHALVIVDGSFEL 163
            + G    ++++   M+          LA II  CS  +   E+  Q++A V+ +G F  
Sbjct: 273 GRLGDGGEAMKLLIGMFQEDLRPDEITLASIIRSCSSALTSCEI-MQVNAYVLKNG-FHA 330

Query: 164 SVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQ 223
            + ++ AL++ YSK     +AL+ F  ++  + V+WT++I            ID F  M 
Sbjct: 331 FLSIANALINAYSKGGSIAMALQCFNTVLEPDLVTWTSLIGAYAFHSLPKNSIDTFEEML 390

Query: 224 REGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEAL 283
            +GV P ++    VL AC+    +  G  +H ++       D+H+   L H  C   + L
Sbjct: 391 ADGVWPDQIVFLEVLSACSHAGLVNEG--LHYFSLM----KDYHILPGLEHYTC-LIDLL 443

Query: 284 HPARIIFERTKVKDVVIWSSIIRGYSQS--GDLSEAMKLFSRMRLER--------IEPNS 333
             A ++ E        I +S+  GYS    G    A K+   ++L +        +EPN 
Sbjct: 444 GRAGLLDEAFN-----ILNSMSIGYSSDTLGAFIGACKIHGDVKLAKWAAEKLFEMEPNK 498

Query: 334 VTLLAILSS 342
                ++SS
Sbjct: 499 PVNYTLMSS 507



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 75/151 (49%), Gaps = 11/151 (7%)

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
            FL  G  VH +++K G    +S+ N ++N+Y KC     +H++F+EM  R+ V+W T+I
Sbjct: 2   GFLREGKQVHSHVIKLGFCNVLSLQNQILNVYIKCKDFNYAHRLFDEMHVRNVVTWNTVI 61

Query: 407 SG-YGFHGYGEEA-----LQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNV 460
            G     G   E+        F +M    V  DAIT+  +L AC     V+    L   +
Sbjct: 62  CGLVDCRGSDYESSVYMGFCYFRKMLLDKVGFDAITLNGLLRACLELNDVEIGRELHCFI 121

Query: 461 MKEKKIALAIEHY--ACYVDLLGKSGKIEDA 489
           +   K+  A+  +  +  VDL GK G +++A
Sbjct: 122 V---KLGFAVNSFVNSALVDLYGKCGLVKEA 149


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 192/624 (30%), Positives = 323/624 (51%), Gaps = 71/624 (11%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           +G   +   LP  +KAC    +++  G   H     +G +++  + N+L++MY++    E
Sbjct: 143 AGTKPDHFTLPYALKACGELPSYRS-GSAFHGLICCNGFESNVFVCNALVAMYSRSGSLE 201

Query: 81  SAYQLFDEMPYR---DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS 137
            A  +FDE+  +   D ISWNSI+    +      +L++F EM            + IIS
Sbjct: 202 DASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIIS 261

Query: 138 L------CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM 191
           +      C+ +  L   ++IH+  I +G+F    FV  AL+D Y+KC     A+ VF  M
Sbjct: 262 IVNILPACASLKALPQTKEIHSYAIRNGTFA-DAFVCNALIDTYAKCGSMKDAVNVFNVM 320

Query: 192 VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE-------------------------- 225
             ++ VSW AM++G   S  +    +LF+ M++E                          
Sbjct: 321 EFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEAL 380

Query: 226 ---------GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC-CGFDFDHH-------- 267
                    G +P  VT+  +L ACA L  L  G   H Y+   C    D+         
Sbjct: 381 DTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGE 440

Query: 268 ---LSAALMHMYCECTEALHPARIIFERT--KVKDVVIWSSIIRGYSQSGDLSEAMKLFS 322
              +  AL+ MY +C  +   AR IF     + ++VV W+ +I GY+Q GD ++A+KLFS
Sbjct: 441 DLVVHNALIDMYSKC-RSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFS 499

Query: 323 RM--RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK-----AGLNFDVSIGNALM 375
            M  +   + PN+ T+  IL +C   S L  G  +H Y+ +     + + F   + N L+
Sbjct: 500 EMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYF---VANCLI 556

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           +MYSKCG + ++  +F+ M  R+ VSWT+++SGYG HG G+EAL +F +MQ++G  PD I
Sbjct: 557 DMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDI 616

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           + L +L AC+H+G+V +    F+ +  +  +  + +HYAC +DLL +SG+++ A K +  
Sbjct: 617 SFLVLLYACSHSGMVDQGLDYFDIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQE 676

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGA 555
           MPM+PS  I  +L+SACR+H  +E+AE   ++L+  + EN  +YTL+S + + +  W   
Sbjct: 677 MPMEPSAAIWVALLSACRVHSNVELAEYALNKLVSMKAENDGSYTLISNIYATARRWKDV 736

Query: 556 EEVWRVMRAKGLSKSYGFSRIENE 579
             + ++M+  G+ K  G S ++ +
Sbjct: 737 ARIRQLMKKSGIKKRPGCSWVQGK 760



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 153/581 (26%), Positives = 263/581 (45%), Gaps = 68/581 (11%)

Query: 48  LQLHCTALKSGSDADP-VISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           L +    L S S   P  +   +++ Y        A  + + +     + WN ++    +
Sbjct: 67  LSVSLPPLPSHSYVSPKSLGTGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIE 126

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
            G   R++ +   M   G       L   +  C ++     G   H L+  +G FE +VF
Sbjct: 127 EGRLDRAIGVSCRMLRAGTKPDHFTLPYALKACGELPSYRSGSAFHGLICCNG-FESNVF 185

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMV---IRNEVSWTAMISGCIDSQNYDTGIDLFRAM- 222
           V  AL+ +YS+      A  VF+++    I + +SW ++++  +   N  T +DLF  M 
Sbjct: 186 VCNALVAMYSRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMT 245

Query: 223 -----QREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYC 277
                +    +   +++  +L ACA L+ L   K IH YA   G   D  +  AL+  Y 
Sbjct: 246 TIVHEKATNERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYA 305

Query: 278 ECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI-------- 329
           +C  ++  A  +F   + KDVV W++++ GY+QSG    A +LF  MR E I        
Sbjct: 306 KCG-SMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWS 364

Query: 330 ---------------------------EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
                                      EPNSVT++++LS+C     LS G+  H Y +K 
Sbjct: 365 AVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKK 424

Query: 363 GL------------NFDVSIGNALMNMYSKCGSITSSHQIFNEMA--ARDFVSWTTLISG 408
            L              D+ + NAL++MYSKC S  ++  IFN +    R+ V+WT +I G
Sbjct: 425 CLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGG 484

Query: 409 YGFHGYGEEALQLFLEM--QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
           Y  +G   +AL+LF EM  +   V P+A T+  IL AC H   ++  + +   V +  + 
Sbjct: 485 YAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEY 544

Query: 467 ALAIEHYA-CYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
             ++   A C +D+  K G ++ A  V  +MP +      +S++S   +HGR + A  + 
Sbjct: 545 ESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVS-WTSMMSGYGMHGRGKEALDIF 603

Query: 526 HQLIEAE--PENAANYTLLSMVCSESGNWLGAEEVWRVMRA 564
            ++ +A   P++ + + +L   CS SG      + + +MR+
Sbjct: 604 DKMQKAGFVPDDIS-FLVLLYACSHSGMVDQGLDYFDIMRS 643



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 131/518 (25%), Positives = 223/518 (43%), Gaps = 104/518 (20%)

Query: 6   FYEQTLHLYKQELHP-SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPV 64
           F E T  ++++  +  S + S   ILP+     A  QT +     +H  A+++G+ AD  
Sbjct: 241 FSEMTTIVHEKATNERSDIISIVNILPACASLKALPQTKE-----IHSYAIRNGTFADAF 295

Query: 65  ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFR------ 118
           + N+LI  YAK    + A  +F+ M ++D +SWN+++  +TQ+G +  + E+F+      
Sbjct: 296 VCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKEN 355

Query: 119 -----------------------------EMYLCGFVLKAELLAGIISLCSQIGELELGR 149
                                        +M L G    +  +  ++S C+ +G L  G 
Sbjct: 356 IPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGM 415

Query: 150 QIHALVIVDGSFEL-----------SVFVSTALLDLYSKCHHWLIALRVFEQMVI--RNE 196
           + HA  +      L            + V  AL+D+YSKC  +  A  +F  +    RN 
Sbjct: 416 ETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNV 475

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAM--QREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
           V+WT MI G     + +  + LF  M  +   V P   T++ +L+ACA L  LR GK IH
Sbjct: 476 VTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIH 535

Query: 255 GYAYCCGFDFDHH--------LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
            Y         HH        ++  L+ MY +C + +  AR +F+    ++ V W+S++ 
Sbjct: 536 AYVT------RHHEYESSVYFVANCLIDMYSKCGD-VDTARNVFDSMPKRNEVSWTSMMS 588

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           GY   G   EA+ +F +M+     P+ ++ L +L +C+    +  GL            F
Sbjct: 589 GYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDY----------F 638

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           D+        M S  G I S+              +  +I      G  ++A +    +Q
Sbjct: 639 DI--------MRSDYGVIASAQH------------YACVIDLLARSGRLDKAWK---TIQ 675

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK 464
           E  +EP A   +A+LSAC     V+ AE   N ++  K
Sbjct: 676 EMPMEPSAAIWVALLSACRVHSNVELAEYALNKLVSMK 713


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 189/604 (31%), Positives = 305/604 (50%), Gaps = 41/604 (6%)

Query: 10  TLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSL 69
           TLH       P  L  N   L +++  C   Q  +    Q+H   +K+G        + L
Sbjct: 16  TLHFQPTSDPPYKLLQNHPSL-TLLSTCKSFQNLK----QIHSQIIKTGLHNTQFALSKL 70

Query: 70  ISMYA--KFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           I   A   F     A  LF+ +   +   WN++I   + +   V +++ +  M LCG   
Sbjct: 71  IEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEP 130

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW------ 181
            +     ++  C+++G  + G+QIH  V+  G  E   FV T+L+++Y++          
Sbjct: 131 NSYTFPFLLKSCAKVGATQEGKQIHGHVLKLG-LESDPFVHTSLINMYAQNGELGYAELV 189

Query: 182 --------------LI-----------ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGI 216
                         LI           A R+FE++ +R+ VSW AMI+G   S  ++  +
Sbjct: 190 FSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEAL 249

Query: 217 DLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMY 276
             F+ M+R  V P   T+  VL ACA+   L  G  +  +    G   +  L  AL+ MY
Sbjct: 250 AFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMY 309

Query: 277 CECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTL 336
            +C + L  AR +FE    KD++ W+ +I GYS      EA+ LF +M+   +EPN VT 
Sbjct: 310 SKCGD-LDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTF 368

Query: 337 LAILSSCTRQSFLSHGLGVHCYIMKAGLNF-DVSIGNALMNMYSKCGSITSSHQIFNEMA 395
           ++IL +C     L  G  +H YI K  L   + S+  +L++MY+KCG+I ++ Q+F  M 
Sbjct: 369 VSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMK 428

Query: 396 ARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAET 455
            +   SW  +ISG   HG+   AL+LF +M++ G EPD IT + +LSAC+HAGLV+    
Sbjct: 429 PKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQ 488

Query: 456 LFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIH 515
            F++++++  I+  ++HY C +DLLG++G  ++A  ++  M MKP   I  SL+ ACR+H
Sbjct: 489 CFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVH 548

Query: 516 GRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSR 575
           G +E+ E  A  L E EPEN   Y LLS + + +G W     +   +  KG+ K     +
Sbjct: 549 GNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKXQDIYK 608

Query: 576 IENE 579
           + +E
Sbjct: 609 MLDE 612


>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 182/525 (34%), Positives = 296/525 (56%), Gaps = 19/525 (3%)

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           NSLIS+  K    + A +LF  MP  D  SWNS+++ F Q+  +  SLE F +M+   F+
Sbjct: 85  NSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFL 144

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
           L        +S C+ + +L +G Q+HALV     +   V++ +AL+D+YSKC     A  
Sbjct: 145 LNEYSFGSALSACAGLMDLNMGTQVHALV-SKSRYSTDVYMGSALIDMYSKCGSVACAEE 203

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VF  M+ RN V+W ++I+    +      +++F  M   G++P  VTL  V+ ACA L  
Sbjct: 204 VFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCA 263

Query: 247 LRNGKAIHGYAYCCG-FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
           L+ G  IH        F  D  L  AL+ MY +C++ ++ AR +F+R  +++VV  +S++
Sbjct: 264 LKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSK-VNEARRVFDRMSIRNVVSETSMV 322

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG-- 363
            GY+++  +  A  +FS+M     + N V+  A+++  T+       L +   + +    
Sbjct: 323 SGYARAASVKAARFMFSKM----TQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIW 378

Query: 364 ---------LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGY 414
                    L  D+ +GN+L++MY KCGSI    ++F +M  RD VSW  +I GY  +GY
Sbjct: 379 PTHYTFGNLLKSDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGY 438

Query: 415 GEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYA 474
           G EALQ+F +M   G +PD +T++ +L AC+HAGLV+E    F + M+E  +    +HY 
Sbjct: 439 GAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFS-MEEHGLIPLKDHYT 497

Query: 475 CYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPE 534
           C VDLLG++G + +A  ++  MP+ P   +  SL++AC++HG +E+ +  A +L+E +P 
Sbjct: 498 CMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPW 557

Query: 535 NAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIENE 579
           N+  Y LLS + +E G W     V ++MR +G++K  G S IE E
Sbjct: 558 NSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVE 602



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 121/461 (26%), Positives = 207/461 (44%), Gaps = 62/461 (13%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           +E++L  Y  ++H      N     S + ACA      + G Q+H    KS    D  + 
Sbjct: 128 FEESLE-YFVKMHREDFLLNEYSFGSALSACA-GLMDLNMGTQVHALVSKSRYSTDVYMG 185

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           ++LI MY+K      A ++F  M  R+ ++WNS+I C+ QNG    +LE+F  M   G  
Sbjct: 186 SALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLE 245

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
                LA ++S C+ +  L+ G QIHA V+    F   + +  AL+D+Y+KC     A R
Sbjct: 246 PDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARR 305

Query: 187 VFEQMVI-------------------------------RNEVSWTAMISGCIDSQNYDTG 215
           VF++M I                               RN VSW A+I+G   +   +  
Sbjct: 306 VFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEA 365

Query: 216 IDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHM 275
           + LFR ++RE + PT  T   +L +                        D  +  +L+ M
Sbjct: 366 LRLFRLLKRESIWPTHYTFGNLLKS------------------------DIFVGNSLIDM 401

Query: 276 YCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVT 335
           Y +C      +R +FE+ K +D V W++II GY+Q+G  +EA+++F +M +   +P+ VT
Sbjct: 402 YMKCGSIEDGSR-VFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVT 460

Query: 336 LLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA 395
           ++ +L +C+    +  G      + + GL         ++++  + G +  +  +   M 
Sbjct: 461 MIGVLCACSHAGLVEEGRHYFFSMEEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMP 520

Query: 396 AR-DFVSWTTLISGYGFHG---YGEEALQLFLEMQESGVEP 432
              D V W +L++    HG    G+ A +  LE+      P
Sbjct: 521 VNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGP 561



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 113/426 (26%), Positives = 199/426 (46%), Gaps = 58/426 (13%)

Query: 116 MFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLY 175
           + R++YL      A+LL   +   S  G     R +HA +++   F + +F+   L+D+Y
Sbjct: 6   LVRDLYLPNSSPFAKLLDSCLRSRSARGT----RLVHARILMT-QFSMEIFIQNRLIDVY 60

Query: 176 SKCHHWLIALRVFEQMVIRN-------------------------------EVSWTAMIS 204
            KC     A ++F++M  RN                               + SW +M+S
Sbjct: 61  GKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVS 120

Query: 205 GCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDF 264
           G      ++  ++ F  M RE       +    L ACA L DL  G  +H       +  
Sbjct: 121 GFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYST 180

Query: 265 DHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM 324
           D ++ +AL+ MY +C  ++  A  +F     +++V W+S+I  Y Q+G  SEA+++F RM
Sbjct: 181 DVYMGSALIDMYSKCG-SVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRM 239

Query: 325 RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG-LNFDVSIGNALMNMYSKCGS 383
               +EP+ VTL +++S+C     L  GL +H  ++K      D+ +GNAL++MY+KC  
Sbjct: 240 MDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSK 299

Query: 384 ITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
           +  + ++F+ M+ R+ VS T+++SGY      + A  +F +M +  V    ++  A+++ 
Sbjct: 300 VNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNV----VSWNALIAG 355

Query: 444 CNHAGLVKEAETLFNNVMKEKKIALAIEHYA-------------CYVDLLGKSGKIEDAC 490
               G  +EA  LF  + +E   ++   HY                +D+  K G IED  
Sbjct: 356 YTQNGENEEALRLFRLLKRE---SIWPTHYTFGNLLKSDIFVGNSLIDMYMKCGSIEDGS 412

Query: 491 KVVSTM 496
           +V   M
Sbjct: 413 RVFEKM 418



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 146/302 (48%), Gaps = 32/302 (10%)

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
           P       +L +C   R  R  + +H       F  +  +   L+ +Y +C + L  AR 
Sbjct: 13  PNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKC-DCLDDARK 71

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM----------------RLERIEP- 331
           +F+R   ++   W+S+I   ++SG L EA +LF  M                + +R E  
Sbjct: 72  LFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEES 131

Query: 332 --------------NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
                         N  +  + LS+C     L+ G  VH  + K+  + DV +G+AL++M
Sbjct: 132 LEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDM 191

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           YSKCGS+  + ++F+ M  R+ V+W +LI+ Y  +G   EAL++F+ M +SG+EPD +T+
Sbjct: 192 YSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTL 251

Query: 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
            +++SAC     +KE   +   V+K  K    +      VD+  K  K+ +A +V   M 
Sbjct: 252 ASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMS 311

Query: 498 MK 499
           ++
Sbjct: 312 IR 313


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  314 bits (805), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 191/600 (31%), Positives = 307/600 (51%), Gaps = 72/600 (12%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E+ L LYK  +  + +  +    P V++ACA  +  +  G ++H   LK G D+D  + N
Sbjct: 123 EKALLLYKL-MVKNNVGPDNYTYPLVVQACA-VRLLEFGGKEIHDHVLKVGFDSDVYVQN 180

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +LI+MYA       A +LFDE P  D++SWNSI                     L G+V 
Sbjct: 181 TLINMYAVCGNMRDARKLFDESPVLDSVSWNSI---------------------LAGYVK 219

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
           K              G++E      A +I D   + ++  S +++ L  K    + A ++
Sbjct: 220 K--------------GDVE-----EAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKL 260

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F +M  ++ VSW+A+ISG   +  Y+  + +F  M   G++   V +  VL ACA L  +
Sbjct: 261 FNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIV 320

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTE-------------------------- 281
           + GK IHG     G +   +L  AL+HMY    E                          
Sbjct: 321 KTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGC 380

Query: 282 ----ALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLL 337
               ++  AR +F+    KD+V WS++I GY+Q    SE + LF  M+L +I P+   L+
Sbjct: 381 MKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILV 440

Query: 338 AILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR 397
           +++S+CT  + L  G  VH YI K GL  +V +G  L++MY KCG + ++ ++FN M  +
Sbjct: 441 SVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEK 500

Query: 398 DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLF 457
              SW  LI G   +G  E +L +F EM+ +GV P+ IT + +L AC H GLV E    F
Sbjct: 501 GVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHF 560

Query: 458 NNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGR 517
            +++++  I   ++HY C VDLLG++G + +A K++ +MPM P      +L+ AC+ HG 
Sbjct: 561 ASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGD 620

Query: 518 LEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            E+ E +  +LIE +P++   + LLS + +  G+W    EV  +M+ +G+ K+ G S IE
Sbjct: 621 TEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIE 680



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 100/354 (28%), Positives = 168/354 (47%), Gaps = 52/354 (14%)

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
           +L++F+++   N   W  M+   I S + +  + L++ M +  V P   T  +V+ ACA 
Sbjct: 94  SLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACA- 152

Query: 244 LRDLR-NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
           +R L   GK IH +    GFD D ++   L++MY  C   +  AR +F+ + V D V W+
Sbjct: 153 VRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGN-MRDARKLFDESPVLDSVSWN 211

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
           SI+ GY + GD+ EA  +F +M    I  +                              
Sbjct: 212 SILAGYVKKGDVEEAKLIFDQMPQRNIVAS------------------------------ 241

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
                    N+++ +  K G +  + ++FNEM  +D VSW+ LISGY  +G  EEAL +F
Sbjct: 242 ---------NSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMF 292

Query: 423 LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYA----CYVD 478
           +EM  +G+  D + V+++LSAC H  +VK  + +   V++     + IE Y       + 
Sbjct: 293 IEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIR-----MGIESYVNLQNALIH 347

Query: 479 LLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE 532
           +   SG+I DA K+ +           +S++S C   G +E A  L   + E +
Sbjct: 348 MYSGSGEIMDAQKLFNG-SHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKD 400



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 106/481 (22%), Positives = 218/481 (45%), Gaps = 76/481 (15%)

Query: 71  SMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE 130
           S  + F   + + Q+FD +   +   WN+++  + Q+    ++L +++ M          
Sbjct: 83  STDSPFIGLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNY 142

Query: 131 LLAGIISLCSQIGELEL-GRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
               ++  C+ +  LE  G++IH  V+  G F+  V+V   L+++Y+ C +   A ++F+
Sbjct: 143 TYPLVVQACA-VRLLEFGGKEIHDHVLKVG-FDSDVYVQNTLINMYAVCGNMRDARKLFD 200

Query: 190 QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
           +  + + VSW ++++G +   + +    +F  M +  +  +     IVLL        + 
Sbjct: 201 ESPVLDSVSWNSILAGYVKKGDVEEAKLIFDQMPQRNIVASNS--MIVLLG-------KM 251

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
           G+ +  +                                +F     KD+V WS++I GY 
Sbjct: 252 GQVMEAWK-------------------------------LFNEMDEKDMVSWSALISGYE 280

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
           Q+G   EA+ +F  M    +  + V ++++LS+C   S +  G  +H  +++ G+   V+
Sbjct: 281 QNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVN 340

Query: 370 IGNALMNMYS-------------------------------KCGSITSSHQIFNEMAARD 398
           + NAL++MYS                               KCGS+  +  +F+ M  +D
Sbjct: 341 LQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKD 400

Query: 399 FVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFN 458
            VSW+ +ISGY  H    E L LF EMQ   + PD   +++++SAC H   + + + + +
Sbjct: 401 IVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWV-H 459

Query: 459 NVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRL 518
             +++  + + +      +D+  K G +E+A +V + M  K  +   ++L+    ++G +
Sbjct: 460 AYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSS-WNALIIGLAVNGLV 518

Query: 519 E 519
           E
Sbjct: 519 E 519



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 142/290 (48%), Gaps = 16/290 (5%)

Query: 228 KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECT-EALHPA 286
           KPT +TL+I+        +L+    I       GF  D   ++ L+    +     L  +
Sbjct: 36  KPT-ITLSILETHLHNCHNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYS 94

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
             IF+R +  +  +W++++R Y QS    +A+ L+  M    + P++ T   ++ +C  +
Sbjct: 95  LQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVR 154

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
                G  +H +++K G + DV + N L+NMY+ CG++  + ++F+E    D VSW +++
Sbjct: 155 LLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSIL 214

Query: 407 SGYGFHGYGEEALQLFLEM-QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           +GY   G  EEA  +F +M Q + V  +++ VL         G V EA  LFN  M EK 
Sbjct: 215 AGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVL-----LGKMGQVMEAWKLFNE-MDEKD 268

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMP---MKPSTRILSSLVSAC 512
           +      ++  +    ++G  E+A  +   M    M+    ++ S++SAC
Sbjct: 269 MV----SWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSAC 314


>gi|125571373|gb|EAZ12888.1| hypothetical protein OsJ_02809 [Oryza sativa Japonica Group]
          Length = 669

 Score =  314 bits (805), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 169/534 (31%), Positives = 293/534 (54%), Gaps = 8/534 (1%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G  +H    + G  +D  + + L++ Y  F   E A ++F+EM  RD +SW S+I+   Q
Sbjct: 140 GDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVEEASKVFEEMYERDVVSWTSMISACAQ 199

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSF--ELS 164
            G + + L+M  EM   G +     +  ++S C Q   ++ GR ++  V   G F  E  
Sbjct: 200 CGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQV---GKFGIEAD 256

Query: 165 VFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR 224
           V +  AL+ +Y+KC     AL  F+ M  R   SW  +I G + +  +   + +F  M  
Sbjct: 257 VDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLL 316

Query: 225 EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
            GV P  +TL  VL ACA+L +LR G  +H Y    G   D+ L+ +L++MY +C + + 
Sbjct: 317 HGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGD-MA 375

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
            A  +F+    KDVV W+ ++ GY +    + A  LF  M++  +  + + L+++LS+C+
Sbjct: 376 AAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACS 435

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
           +   L  G  +H YI +  +  D+ + +AL++MY+KCG I ++ +IF +M  +  +SW  
Sbjct: 436 QLGALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQTLSWNA 495

Query: 405 LISGYGFHGYGEEALQLFLEMQE-SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKE 463
           +I G   +GYG+EA++LF +M E    +PD IT+ A+L AC H G+V E    F  +M  
Sbjct: 496 MIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGACAHVGMVDEGLRYF-YLMSS 554

Query: 464 KKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEM 523
             +    EHY C VDLLG++G +++A   +  MP++P+  I  SL++ACR+H R+++ ++
Sbjct: 555 LGVVPDTEHYGCIVDLLGRAGMLDEAFHFIKKMPIEPNPVIWGSLLAACRVHHRMDLGKV 614

Query: 524 LAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +   ++   P +   + L+S + +E   W   E V  +M ++G+ K+ G S ++
Sbjct: 615 IGQHIVNVAPNDVGVHVLVSNLHAEESQWDDVEHVRGLMGSRGIEKTPGHSSVQ 668



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 147/529 (27%), Positives = 266/529 (50%), Gaps = 16/529 (3%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES---AYQLF 86
           L + + ACA   +  H   +LH   +++   +D  ++  LI++ A  +       A ++F
Sbjct: 20  LLAYLDACA---SRAHLA-ELHGRLVRAHLTSDSFVAGRLIALLASPAARHDMRYARKVF 75

Query: 87  DEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELE 146
           D M   +   WN +I  ++       +L +FREM   G       +A ++S  +    L+
Sbjct: 76  DGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAAFAGLK 135

Query: 147 L---GRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMI 203
               G  IHALV   G F   VFV + L++ Y        A +VFE+M  R+ VSWT+MI
Sbjct: 136 WRSNGDAIHALVRRIG-FTSDVFVMSGLVNYYGAFRSVEEASKVFEEMYERDVVSWTSMI 194

Query: 204 SGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFD 263
           S C    ++D  + +   MQ EG+ P +VT+  +L AC + + +  G+ ++      G +
Sbjct: 195 SACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIE 254

Query: 264 FDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSR 323
            D  +  AL+ MY +C   L  A   F+    +    W+++I G+ Q+ +  EA+++F  
Sbjct: 255 ADVDIRNALISMYTKCG-CLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEE 313

Query: 324 MRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS 383
           M L  + P+ +TL+++LS+C +   L  G+ VH YI   G+  D  + N+L+NMY+KCG 
Sbjct: 314 MLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGD 373

Query: 384 ITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
           + ++ ++F  M  +D VSWT ++ GY        A  LF EM+ + V    + ++++LSA
Sbjct: 374 MAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSA 433

Query: 444 CNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTR 503
           C+  G + +   + ++ ++E  +A  +   +  VD+  K G I+ A ++   M  K  T 
Sbjct: 434 CSQLGALDKGREI-HSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHK-QTL 491

Query: 504 ILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV--CSESG 550
             ++++     +G  + A  L  Q++E +       TL +++  C+  G
Sbjct: 492 SWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGACAHVG 540



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 128/418 (30%), Positives = 210/418 (50%), Gaps = 24/418 (5%)

Query: 127 LKAELLAGIISLCSQIGELEL-GRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
           ++  LLA + +  S+    EL GR + A +  D SF     +  ALL   +  H    A 
Sbjct: 16  IRHHLLAYLDACASRAHLAELHGRLVRAHLTSD-SFVAGRLI--ALLASPAARHDMRYAR 72

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
           +VF+ M   N   W  MI G    +     + +FR M+R GV P   T+  V+ A A   
Sbjct: 73  KVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAAFA 132

Query: 246 DLR---NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
            L+   NG AIH      GF  D  + + L++ Y     ++  A  +FE    +DVV W+
Sbjct: 133 GLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYY-GAFRSVEEASKVFEEMYERDVVSWT 191

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
           S+I   +Q G   + +K+ S M+ E I PN VT++++LS+C +   +  G  V+  + K 
Sbjct: 192 SMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKF 251

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
           G+  DV I NAL++MY+KCG ++ + + F  M AR   SW TLI G+  +   +EAL++F
Sbjct: 252 GIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIF 311

Query: 423 LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGK 482
            EM   GV PD IT++++LSAC   G +++   + ++ +K+  I          +++  K
Sbjct: 312 EEMLLHGVTPDGITLVSVLSACAQLGELRKGMHV-HSYIKDNGICCDNILTNSLINMYAK 370

Query: 483 SGKIEDACKVVSTMPMKPSTRILSSLVSAC------------RIHGRLEVAEMLAHQL 528
            G +  A +V  TM  K    ++S  V  C             +   +++AE++AH++
Sbjct: 371 CGDMAAAERVFQTMTKKD---VVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEM 425


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  314 bits (805), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 206/598 (34%), Positives = 306/598 (51%), Gaps = 45/598 (7%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           +E  +HL++  L    +   +  L SV  AC+        G Q+H   L++G D     +
Sbjct: 167 WELAVHLFRLMLL-ENVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNG-DWRTFTN 224

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           N+L++MYAK  +   A  LFD    +D +SWN+II+  +QN  +  +L     M   G  
Sbjct: 225 NALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVR 284

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
                LA ++  CS +  L  G++IHA V+++     + FV  AL+D+Y  C        
Sbjct: 285 PNGVTLASVLPACSHLEMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRL 344

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE-GVKPTRVTLTIVLLACAELR 245
           VF+ M  R    W AMI+G + ++     I+LF  M  E G+ P  VTL+ VL AC    
Sbjct: 345 VFDGMFRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCE 404

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
              + + IH      GF+ D ++  ALM MY      +  AR IF     KD+V W+++I
Sbjct: 405 SFLDKEGIHSCVVKWGFEKDKYVQNALMDMYSRMGR-IEIARSIFGSMNRKDIVSWNTMI 463

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIE------------------PNSVTLLAILSSCTRQS 347
            GY   G   +A+ L   M+  + E                  PNSVTL+ +L  C   +
Sbjct: 464 TGYVVCGRHDDALNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALA 523

Query: 348 FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLIS 407
            L  G  +H Y +K  L+ DV++G+AL++MY+KCG +  S  +F +M+ R+ ++W  LI 
Sbjct: 524 ALGKGKEIHAYAVKQMLSKDVAVGSALVDMYAKCGCLNLSRTVFEQMSVRNVITWNVLIM 583

Query: 408 GYGFHGYGEEALQLFLEMQESG-----VEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462
            YG HG GEEAL+LF  M E G     + P+ +T +AI ++ +H+G+V E   LF  +  
Sbjct: 584 AYGMHGKGEEALKLFRRMVEEGDNNREIRPNEVTYIAIFASLSHSGMVDEGLNLFYTMKA 643

Query: 463 EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP--MKPSTRILSSLVSACRIHGRLEV 520
           +  I    +HYAC VDLLG+SG+IE+A  ++ TMP  MK      SSL+ AC+IH  LE+
Sbjct: 644 KHGIEPTSDHYACLVDLLGRSGQIEEAYNLIKTMPSNMK-KVDAWSSLLGACKIHQNLEI 702

Query: 521 AEMLAHQLIEAEPENAANY-TLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            E+ A  L   +P N  +Y T  SM        LG     R M+ KG+ K  G S IE
Sbjct: 703 GEIAAKNLFVLDP-NVLDYGTKQSM--------LG-----RKMKEKGVRKEPGCSWIE 746



 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 160/540 (29%), Positives = 269/540 (49%), Gaps = 35/540 (6%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           +G+  +    P+V+KA A  Q   + G QLH    K G      + NSL++MY K    +
Sbjct: 79  AGVPPDNFAFPAVLKATAGIQD-LNLGKQLHAHVFKFGQALPTAVPNSLVNMYGKCGDID 137

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
           +A ++FDE+  RD +SWNS+IN   +   +  ++ +FR M L      +  L  +   CS
Sbjct: 138 AARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENVGPTSFTLVSVAHACS 197

Query: 141 Q-IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSW 199
             I  L LG+Q+HA V+ +G +    F + AL+ +Y+K      A  +F+    ++ VSW
Sbjct: 198 NLINGLLLGKQVHAFVLRNGDWR--TFTNNALVTMYAKLGRVYEAKTLFDVFDDKDLVSW 255

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
             +IS    +  ++  +     M + GV+P  VTL  VL AC+ L  L  GK IH +   
Sbjct: 256 NTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKEIHAFVLM 315

Query: 260 CGFDFDHH-LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAM 318
                ++  +  AL+ MYC C +     R++F+    + + +W+++I GY ++    EA+
Sbjct: 316 NNDLIENSFVGCALVDMYCNCKQP-EKGRLVFDGMFRRTIAVWNAMIAGYVRNEFDYEAI 374

Query: 319 KLFSRMRLE-RIEPNSVTLLAILSSCTR-QSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
           +LF  M  E  + PNSVTL ++L +C R +SFL    G+H  ++K G   D  + NALM+
Sbjct: 375 ELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKE-GIHSCVVKWGFEKDKYVQNALMD 433

Query: 377 MYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE----- 431
           MYS+ G I  +  IF  M  +D VSW T+I+GY   G  ++AL L  +MQ    E     
Sbjct: 434 MYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVVCGRHDDALNLLHDMQRGQAEHRINT 493

Query: 432 -------------PDAITVLAILSACNHAGLVKEAETLFNNVMKE---KKIALAIEHYAC 475
                        P+++T++ +L  C     + + + +    +K+   K +A+     + 
Sbjct: 494 FDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQMLSKDVAVG----SA 549

Query: 476 YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPEN 535
            VD+  K G +  +  V   M ++ +    + L+ A  +HG+ E A  L  +++E    N
Sbjct: 550 LVDMYAKCGCLNLSRTVFEQMSVR-NVITWNVLIMAYGMHGKGEEALKLFRRMVEEGDNN 608



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 125/451 (27%), Positives = 221/451 (49%), Gaps = 19/451 (4%)

Query: 97  WNSIINCFTQNG-FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALV 155
           W S +   TQ+   + +++  +  M   G          ++   + I +L LG+Q+HA V
Sbjct: 52  WVSHLRSQTQSSSTFHQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHV 111

Query: 156 IVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTG 215
              G   L   V  +L+++Y KC     A RVF+++  R++VSW +MI+     + ++  
Sbjct: 112 FKFGQ-ALPTAVPNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELA 170

Query: 216 IDLFRAMQREGVKPTRVTLTIVLLACAEL-RDLRNGKAIHGYAYCCGFDFDHHLSAALMH 274
           + LFR M  E V PT  TL  V  AC+ L   L  GK +H +    G D+    + AL+ 
Sbjct: 171 VHLFRLMLLENVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNG-DWRTFTNNALVT 229

Query: 275 MYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSV 334
           MY +    ++ A+ +F+    KD+V W++II   SQ+    EA+     M    + PN V
Sbjct: 230 MYAKLGR-VYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGV 288

Query: 335 TLLAILSSCTRQSFLSHGLGVHCYI-MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNE 393
           TL ++L +C+    L  G  +H ++ M   L  +  +G AL++MY  C        +F+ 
Sbjct: 289 TLASVLPACSHLEMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDG 348

Query: 394 MAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ-ESGVEPDAITVLAILSACNHAGLVKE 452
           M  R    W  +I+GY  + +  EA++LF+EM  E G+ P+++T+ ++L AC       +
Sbjct: 349 MFRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLD 408

Query: 453 AETLFNNVM-----KEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSS 507
            E + + V+     K+K +  A+      +D+  + G+IE A  +  +M  K      ++
Sbjct: 409 KEGIHSCVVKWGFEKDKYVQNAL------MDMYSRMGRIEIARSIFGSMNRKDIVS-WNT 461

Query: 508 LVSACRIHGRLEVAEMLAHQLIEAEPENAAN 538
           +++   + GR + A  L H +   + E+  N
Sbjct: 462 MITGYVVCGRHDDALNLLHDMQRGQAEHRIN 492


>gi|78499697|gb|ABB45851.1| hypothetical protein [Eutrema halophilum]
          Length = 697

 Score =  314 bits (805), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 182/572 (31%), Positives = 307/572 (53%), Gaps = 7/572 (1%)

Query: 8   EQTLHLYK-QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           E+ L L+    + P G+  +T +L   +KAC  + ++  +G  LH  A K+   +   + 
Sbjct: 76  EEALILFSAMRVDPLGVSGDTYVLSVALKACGQS-SNIAYGESLHAYAEKTFLLSSVFVG 134

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           ++L+ MY +  K + + ++F EMP+R++++W + I      G +   L  F +M      
Sbjct: 135 SALLDMYMRIGKIDKSCRVFAEMPFRNSVTWTAFITGLVHAGLHYEGLRYFSQMSRFK-Q 193

Query: 127 LKAELLAGIISL--CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
           L ++  A  I+L  C+ + +++ GR+IH  VIV G F   ++V+ +L  +Y++C      
Sbjct: 194 LSSDTFAFAIALKACADLRQVKYGREIHTHVIVKG-FAAILWVANSLATMYTECGEMQDG 252

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
           LR+FE M  R+ V WT++I+  I     +  ++ F  M+   V P   T      ACA L
Sbjct: 253 LRLFESMSERDVVLWTSLITAYIRIGQEEKAVNTFLLMRNSQVSPNEQTFASTFAACASL 312

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
             L  G+ +HG  +  G      +S ++M MY  C + L  A ++F+  + +D++ WS+I
Sbjct: 313 SRLVWGEQLHGNVFSLGLGDSLSVSNSMMKMYSTCAK-LDSASVLFQGMRCRDIISWSTI 371

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
           I GYSQ+    E  K FS MR    +P    L ++LS     + L  G  VH   +  GL
Sbjct: 372 IGGYSQAAFGEECFKYFSWMRQAGPQPTDFALASLLSVSGIMAVLEQGRQVHALALYLGL 431

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
             + +I +AL+NMYSKCGSI  + ++F E    D VS T +I+GY  HG  EEA+ LF +
Sbjct: 432 EQNPTIRSALINMYSKCGSIIEASKVFEEKDRTDIVSLTAMINGYAEHGKCEEAIDLFEK 491

Query: 425 MQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSG 484
             +    PD +T +++L+AC+H+G +      FN + +   +  A EHY C VDLL ++G
Sbjct: 492 SLKLSFRPDDVTFISVLTACSHSGQLDLGFQYFNLMQENYNMRPAKEHYGCMVDLLCRAG 551

Query: 485 KIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSM 544
           ++ DA K+++ MP K    + ++L+ AC+  G +E     A +++E +P +      L+ 
Sbjct: 552 RLNDAEKMINEMPWKKDDVVWTTLLRACKEKGDVERGRRAAQRILELDPTSFTTLVTLAN 611

Query: 545 VCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
           + S +GNW  A  V + M++KG+ K  G+S I
Sbjct: 612 IHSSTGNWKEAANVRKDMKSKGVIKEPGWSSI 643



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 144/487 (29%), Positives = 240/487 (49%), Gaps = 26/487 (5%)

Query: 78  KPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL--CGFVLKAELLAGI 135
           K   A Q+FD+MP RD  SW +I+  +        +L +F  M +   G      +L+  
Sbjct: 43  KLRVARQVFDKMPRRDIKSWTAIMKGYVAATKPEEALILFSAMRVDPLGVSGDTYVLSVA 102

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFEL-SVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           +  C Q   +  G  +HA    + +F L SVFV +ALLD+Y +      + RVF +M  R
Sbjct: 103 LKACGQSSNIAYGESLHAY--AEKTFLLSSVFVGSALLDMYMRIGKIDKSCRVFAEMPFR 160

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQR-EGVKPTRVTLTIVLLACAELRDLRNGKAI 253
           N V+WTA I+G + +  +  G+  F  M R + +        I L ACA+LR ++ G+ I
Sbjct: 161 NSVTWTAFITGLVHAGLHYEGLRYFSQMSRFKQLSSDTFAFAIALKACADLRQVKYGREI 220

Query: 254 HGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGD 313
           H +    GF     ++ +L  MY EC E     R +FE    +DVV+W+S+I  Y + G 
Sbjct: 221 HTHVIVKGFAAILWVANSLATMYTECGEMQDGLR-LFESMSERDVVLWTSLITAYIRIGQ 279

Query: 314 LSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNA 373
             +A+  F  MR  ++ PN  T  +  ++C   S L  G  +H  +   GL   +S+ N+
Sbjct: 280 EEKAVNTFLLMRNSQVSPNEQTFASTFAACASLSRLVWGEQLHGNVFSLGLGDSLSVSNS 339

Query: 374 LMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPD 433
           +M MYS C  + S+  +F  M  RD +SW+T+I GY    +GEE  + F  M+++G +P 
Sbjct: 340 MMKMYSTCAKLDSASVLFQGMRCRDIISWSTIIGGYSQAAFGEECFKYFSWMRQAGPQPT 399

Query: 434 AITVLAILSACNHAGLVKE-----AETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIED 488
              + ++LS      ++++     A  L+  + +   I  A+      +++  K G I +
Sbjct: 400 DFALASLLSVSGIMAVLEQGRQVHALALYLGLEQNPTIRSAL------INMYSKCGSIIE 453

Query: 489 ACKVVSTMPMKPSTRI--LSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLSM 544
           A KV      K  T I  L+++++    HG+ E A  L  + ++    P++    ++L+ 
Sbjct: 454 ASKVFEE---KDRTDIVSLTAMINGYAEHGKCEEAIDLFEKSLKLSFRPDDVTFISVLT- 509

Query: 545 VCSESGN 551
            CS SG 
Sbjct: 510 ACSHSGQ 516



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 68/136 (50%), Gaps = 8/136 (5%)

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES--GVEPDAITVLA 439
           G +  + Q+F++M  RD  SWT ++ GY      EEAL LF  M+    GV  D   +  
Sbjct: 42  GKLRVARQVFDKMPRRDIKSWTAIMKGYVAATKPEEALILFSAMRVDPLGVSGDTYVLSV 101

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIAL-AIEHYACYVDLLGKSGKIEDACKVVSTMPM 498
            L AC  +  +   E+L  +   EK   L ++   +  +D+  + GKI+ +C+V + MP 
Sbjct: 102 ALKACGQSSNIAYGESL--HAYAEKTFLLSSVFVGSALLDMYMRIGKIDKSCRVFAEMPF 159

Query: 499 KPS---TRILSSLVSA 511
           + S   T  ++ LV A
Sbjct: 160 RNSVTWTAFITGLVHA 175


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  314 bits (804), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 190/576 (32%), Positives = 301/576 (52%), Gaps = 66/576 (11%)

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           N+++S YAK    +S+ + FD +P RD++SW ++I  +   G Y +++ +  EM   G  
Sbjct: 84  NTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIE 143

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
                L  +++  +    LE G+++H+ ++  G    +V VS +LL++Y+KC   ++A  
Sbjct: 144 PSQFTLTNVLASVAATRCLETGKKVHSFIVKLG-LRGNVSVSNSLLNMYAKCGDPMMAKV 202

Query: 187 VFEQMVIRNEVSWTAMIS-----GCID-------------------------SQNYD-TG 215
           VF++MV+++  SW AMI+     G +D                          + YD   
Sbjct: 203 VFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRA 262

Query: 216 IDLFRAMQREG-VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMH 274
           +D+F  M R+  + P R TL  VL ACA L  L  G+ IH +    GFD    +  AL+ 
Sbjct: 263 LDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALIS 322

Query: 275 MYCECTEA--------------------------------LHPARIIFERTKVKDVVIWS 302
           MY  C                                   ++ A+ IF+  K +DVV W+
Sbjct: 323 MYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWT 382

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
           ++I GY Q G   EA+ LF  M  E   PNS TL A+LS  +  + L HG  +H   +K+
Sbjct: 383 AMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKS 442

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA-ARDFVSWTTLISGYGFHGYGEEALQL 421
           G  + VS+ NAL+ MY+K GSITS+ + F+ +   RD VSWT++I     HG+ EEAL+L
Sbjct: 443 GEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALEL 502

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
           F  M   G+ PD IT + + SAC HAGLV +    F+ +    KI   + HYAC VDL G
Sbjct: 503 FETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFG 562

Query: 482 KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTL 541
           ++G +++A + +  MP++P      SL+SACR++  +++ ++ A +L+  EPEN+  Y+ 
Sbjct: 563 RAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNIDLGKVAAERLLLLEPENSGAYSA 622

Query: 542 LSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           L+ + S  G W  A ++ + M+   + K  GFS IE
Sbjct: 623 LANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIE 658



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 124/493 (25%), Positives = 218/493 (44%), Gaps = 73/493 (14%)

Query: 124 GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
           G V    L+  ++++ S+ G       +HA  + D     + F    +L  Y+K      
Sbjct: 44  GLVFSVYLMNNLMNVYSKTG-----YALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDS 98

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
           +   F+++  R+ VSWT MI G  +   Y   I +   M REG++P++ TLT VL + A 
Sbjct: 99  SCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAA 158

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK------- 296
            R L  GK +H +    G   +  +S +L++MY +C + +  A+++F+R  VK       
Sbjct: 159 TRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMM-AKVVFDRMVVKDISSWNA 217

Query: 297 ------------------------DVVIWSSIIRGYSQSGDLSEAMKLFSRM-RLERIEP 331
                                   D+V W+S+I GY+Q G    A+ +FS+M R   + P
Sbjct: 218 MIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSP 277

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ-- 389
           +  TL ++LS+C     L  G  +H +I+  G +    + NAL++MYS+CG + ++ +  
Sbjct: 278 DRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLI 337

Query: 390 -------------------------------IFNEMAARDFVSWTTLISGYGFHGYGEEA 418
                                          IF+ +  RD V+WT +I GY  HG   EA
Sbjct: 338 EQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEA 397

Query: 419 LQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVD 478
           + LF  M      P++ T+ A+LS  +    +   + +  + +K  +I  ++      + 
Sbjct: 398 INLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEI-YSVSVSNALIT 456

Query: 479 LLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA-EMLAHQLIEAEPENAA 537
           +  K+G I  A +    +  +  T   +S++ A   HG  E A E+    L+E    +  
Sbjct: 457 MYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHI 516

Query: 538 NYTLLSMVCSESG 550
            Y  +   C+ +G
Sbjct: 517 TYVGVFSACTHAG 529



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 145/550 (26%), Positives = 238/550 (43%), Gaps = 112/550 (20%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           E+   G+  +   L +V+ + A  +  +  G ++H   +K G   +  +SNSL++MYAK 
Sbjct: 136 EMMREGIEPSQFTLTNVLASVAATRCLET-GKKVHSFIVKLGLRGNVSVSNSLLNMYAKC 194

Query: 77  SKPESAYQLFD-------------------------------EMPYRDTISWNSIINCFT 105
             P  A  +FD                               +M  RD ++WNS+I+ + 
Sbjct: 195 GDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYN 254

Query: 106 QNGFYVRSLEMFREMYLCGFVLKAEL-LAGIISLCSQIGELELGRQIHALVIVDGSFELS 164
           Q G+ +R+L+MF +M     +      LA ++S C+ + +L +G QIH+ ++  G F++S
Sbjct: 255 QRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTG-FDIS 313

Query: 165 VFVSTALLDLYSKCHHWLIALRVFEQ---------------------------------M 191
             V  AL+ +YS+C     A R+ EQ                                 +
Sbjct: 314 GIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSL 373

Query: 192 VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGK 251
             R+ V+WTAMI G      Y   I+LFR+M  E  +P   TL  +L   + L  L +GK
Sbjct: 374 KDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGK 433

Query: 252 AIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQS 311
            IHG A   G  +   +S AL+ MY +       +R        +D V W+S+I   +Q 
Sbjct: 434 QIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQH 493

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
           G   EA++LF  M +E + P+ +T + + S+CT                 AGL   V+ G
Sbjct: 494 GHAEEALELFETMLMEGLRPDHITYVGVFSACTH----------------AGL---VNQG 534

Query: 372 NALMNMYSKCGSI--TSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
               +M      I  T SH             +  ++  +G  G  +EA +   +M    
Sbjct: 535 RQYFDMMKDVDKIIPTLSH-------------YACMVDLFGRAGLLQEAQEFIEKMP--- 578

Query: 430 VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEH---YACYVDLLGKSGKI 486
           +EPD +T  ++LSAC    + K  +     V  E+ + L  E+   Y+   +L    GK 
Sbjct: 579 IEPDVVTWGSLLSACR---VYKNID--LGKVAAERLLLLEPENSGAYSALANLYSACGKW 633

Query: 487 EDACKVVSTM 496
           E+A K+  +M
Sbjct: 634 EEAAKIRKSM 643



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 130/549 (23%), Positives = 222/549 (40%), Gaps = 115/549 (20%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           + L ++ + L  S L  +   L SV+ ACA  +     G Q+H   + +G D   ++ N+
Sbjct: 261 RALDMFSKMLRDSMLSPDRFTLASVLSACANLEK-LCIGEQIHSHIVTTGFDISGIVLNA 319

Query: 69  LISMYAKFSKPESAYQL---------------------------------FDEMPYRDTI 95
           LISMY++    E+A +L                                 FD +  RD +
Sbjct: 320 LISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVV 379

Query: 96  SWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALV 155
           +W ++I  + Q+G Y  ++ +FR M        +  LA ++S+ S +  L  G+QIH   
Sbjct: 380 AWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSA 439

Query: 156 IVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI-RNEVSWTAMISGCIDSQNYDT 214
           +  G    SV VS AL+ +Y+K      A R F+ +   R+ VSWT+MI       + + 
Sbjct: 440 VKSGEI-YSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEE 498

Query: 215 GIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMH 274
            ++LF  M  EG++P  +T   V  AC                            A L  
Sbjct: 499 ALELFETMLMEGLRPDHITYVGVFSACTH--------------------------AGL-- 530

Query: 275 MYCECTEALHPARIIFERTKVKDVVI-----WSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
                   ++  R  F+  K  D +I     ++ ++  + ++G L EA +   +M    I
Sbjct: 531 --------VNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKM---PI 579

Query: 330 EPNSVTLLAILSSCTRQSFLSHG-LGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSH 388
           EP+ VT  ++LS+C     +  G +     ++    N      +AL N+YS CG    + 
Sbjct: 580 EPDVVTWGSLLSACRVYKNIDLGKVAAERLLLLEPENSGAY--SALANLYSACGKWEEAA 637

Query: 389 QIFNEM-----AARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA----ITVLA 439
           +I   M           SW  +   +  H +G           E G+ P      IT+  
Sbjct: 638 KIRKSMKDGRVKKEQGFSWIEV--KHKVHAFG----------VEDGIHPQKNEIYITMKK 685

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           I       G V +  ++ +++ +E K  +   H          S K+  A  ++ST P K
Sbjct: 686 IWDEIKKMGYVPDTASVLHDLEEEVKEQILRHH----------SEKLAIAFGLIST-PDK 734

Query: 500 PSTRILSSL 508
            + RI+ +L
Sbjct: 735 TTLRIMKNL 743



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 104/216 (48%), Gaps = 12/216 (5%)

Query: 6   FYEQTLHLYK----QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
            Y + ++L++    +E  P     N+  L +++   +   +  H G Q+H +A+KSG   
Sbjct: 393 LYGEAINLFRSMVGEEQRP-----NSYTLAAMLSVASSLASLGH-GKQIHGSAVKSGEIY 446

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMP-YRDTISWNSIINCFTQNGFYVRSLEMFREM 120
              +SN+LI+MYAK     SA + FD +   RDT+SW S+I    Q+G    +LE+F  M
Sbjct: 447 SVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETM 506

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
            + G         G+ S C+  G +  GRQ   ++        ++     ++DL+ +   
Sbjct: 507 LMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGL 566

Query: 181 WLIALRVFEQMVIRNE-VSWTAMISGCIDSQNYDTG 215
              A    E+M I  + V+W +++S C   +N D G
Sbjct: 567 LQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNIDLG 602



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 69/152 (45%), Gaps = 39/152 (25%)

Query: 331 PNSVTLLAILSSCTR--QSFLSHGLG------VHCYIMKAGLNFDVSIGNALMNMYSKCG 382
           P  ++L  +L  CT   Q  ++   G      VHC ++K+GL F V + N LMN+YSK G
Sbjct: 4   PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLVFSVYLMNNLMNVYSKTG 63

Query: 383 SITSSHQIFNEM-------------------------------AARDFVSWTTLISGYGF 411
               + ++F+EM                                 RD VSWTT+I GY  
Sbjct: 64  YALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKN 123

Query: 412 HGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
            G   +A+++  EM   G+EP   T+  +L++
Sbjct: 124 IGQYHKAIRIMGEMMREGIEPSQFTLTNVLAS 155


>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 881

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 179/571 (31%), Positives = 305/571 (53%), Gaps = 4/571 (0%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           + + L LYK  L   G+  + A   S  ++CA     +  G QLH  ALK+    D ++ 
Sbjct: 252 FTEGLKLYKVML-DEGMGVSQATFASAFRSCAGLSAFE-LGTQLHAYALKTNFGYDNIVG 309

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
            + + MYAK  +   A ++F+  P     S N++I  + +    + +LE+FR +      
Sbjct: 310 TATLDMYAKCDRMVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLD 369

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
                L+G ++ CS I     G Q+H L +  G  + ++ V+  +LD+Y+KC   + A  
Sbjct: 370 FDEISLSGALTACSAIKGYLEGIQLHGLAVKCG-LDFNICVANTILDMYAKCGALMEACL 428

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           +F+ M I++ VSW A+I+    +++ +  + LF +M R  ++P   T   V+ ACA  + 
Sbjct: 429 IFDDMEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKA 488

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L  G  +HG     G   D  + +A++ MYC+C   L  A  I ER + +  V W+SII 
Sbjct: 489 LNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCG-MLVEAEKIHERLEERTTVSWNSIIS 547

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           G+S       A+  FSRM    + P++ T   +L  C   + +  G  +H  I+K  L+ 
Sbjct: 548 GFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICANLATVELGKQIHGQILKLQLHS 607

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           DV I + +++MYSKCG++  S  +F +   RD+V+W+ +I  Y +HG GE+A++LF EMQ
Sbjct: 608 DVYIASTIVDMYSKCGNMQDSRIMFEKAPKRDYVTWSAMICAYAYHGLGEDAIKLFEEMQ 667

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
              V+P+    +++L AC H G V +    F  +     +   +EHY+C VDLLG+SG++
Sbjct: 668 LQNVKPNHTIFISVLRACAHMGFVDKGLHYFREMRSHYGLDPQMEHYSCMVDLLGRSGQV 727

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546
            +A +++ +MP +    I  +L+  CR+ G +EVAE  A+ L++ +P++++ Y LLS V 
Sbjct: 728 NEALELIESMPFEADDVIWRTLLGICRLQGNVEVAEKAANSLLQLDPQDSSAYVLLSNVY 787

Query: 547 SESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           + +G W    ++   M+   L K  G S I+
Sbjct: 788 AIAGMWGEVAKIRSFMKNYKLKKEPGCSWIQ 818



 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 155/541 (28%), Positives = 274/541 (50%), Gaps = 12/541 (2%)

Query: 28  AILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFD 87
           A    V+KAC   + +   GLQ+HC A++ G D+D V   +L+ MY+   K + A+ +F 
Sbjct: 171 ATFAVVLKACTGIEDYG-LGLQVHCLAIQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFC 229

Query: 88  EMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELEL 147
           EMP R+++ W+++I  + +N  +   L++++ M   G  +     A     C+ +   EL
Sbjct: 230 EMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFRSCAGLSAFEL 289

Query: 148 GRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCI 207
           G Q+HA  +   +F     V TA LD+Y+KC   + A +VF         S  A+I G  
Sbjct: 290 GTQLHAYAL-KTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQSHNALIVGYA 348

Query: 208 DSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
                   +++FR++Q+  +    ++L+  L AC+ ++    G  +HG A  CG DF+  
Sbjct: 349 RQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQLHGLAVKCGLDFNIC 408

Query: 268 LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
           ++  ++ MY +C  AL  A +IF+  ++KD V W++II  + Q+  + E + LF  M   
Sbjct: 409 VANTILDMYAKCG-ALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRS 467

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
            +EP+  T  +++ +C  +  L++G+ VH  ++K+G+  D  +G+A+++MY KCG +  +
Sbjct: 468 TMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEA 527

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHA 447
            +I   +  R  VSW ++ISG+     GE AL  F  M + GV PD  T   +L  C + 
Sbjct: 528 EKIHERLEERTTVSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICANL 587

Query: 448 GLVKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDACKVVSTMPMKPSTRIL 505
             V+  + +   ++   K+ L  + Y  +  VD+  K G ++D+  +    P K      
Sbjct: 588 ATVELGKQIHGQIL---KLQLHSDVYIASTIVDMYSKCGNMQDSRIMFEKAP-KRDYVTW 643

Query: 506 SSLVSACRIHGRLEVAEMLAH--QLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMR 563
           S+++ A   HG  E A  L    QL   +P +    ++L   C+  G        +R MR
Sbjct: 644 SAMICAYAYHGLGEDAIKLFEEMQLQNVKPNHTIFISVLR-ACAHMGFVDKGLHYFREMR 702

Query: 564 A 564
           +
Sbjct: 703 S 703



 Score =  228 bits (580), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 142/484 (29%), Positives = 243/484 (50%), Gaps = 31/484 (6%)

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D +  N++I  YA     E A  LFD MP RD +SWNS+++C+ QNGF+ +S+E+F +M 
Sbjct: 103 DVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIFTKMR 162

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
           L          A ++  C+ I +  LG Q+H L I  G F+  V   TAL+D+YS C   
Sbjct: 163 LLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMG-FDSDVVTGTALVDMYSTCKKL 221

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             A  +F +M  RN V W+A+I+G + +  +  G+ L++ M  EG+  ++ T      +C
Sbjct: 222 DHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFRSC 281

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A L     G  +H YA    F +D+ +  A + MY +C + +  AR +F           
Sbjct: 282 AGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKC-DRMVDARKVFNTFPNPTRQSH 340

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           +++I GY++   + EA+++F  ++   ++ + ++L   L++C+       G+ +H   +K
Sbjct: 341 NALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQLHGLAVK 400

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
            GL+F++ + N +++MY+KCG++  +  IF++M  +D VSW  +I+ +  + + EE L L
Sbjct: 401 CGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEETLAL 460

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
           F+ M  S +EPD  T  +++ AC     +     +   V+K              +D   
Sbjct: 461 FVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKS----------GMGLDWFV 510

Query: 482 KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLI------EAEPEN 535
            S  I+  CK                LV A +IH RLE    ++   I      E + EN
Sbjct: 511 GSAIIDMYCKC-------------GMLVEAEKIHERLEERTTVSWNSIISGFSSEKQGEN 557

Query: 536 AANY 539
           A +Y
Sbjct: 558 ALSY 561



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 113/402 (28%), Positives = 178/402 (44%), Gaps = 40/402 (9%)

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           I   CS +  +  G+Q HA + V G F  +VFVS  LL  Y KC +   A  VF++M  R
Sbjct: 44  IFQKCSNLKAINPGKQAHAQITVTG-FVPTVFVSNCLLQFYCKCLNLNYAFNVFDKMPQR 102

Query: 195 NEVSWTAMISG------------CIDS-----------------QN--YDTGIDLFRAMQ 223
           + +SW  MI G              DS                 QN  +   I++F  M+
Sbjct: 103 DVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIFTKMR 162

Query: 224 REGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEAL 283
              ++    T  +VL AC  + D   G  +H  A   GFD D     AL+ MY  C +  
Sbjct: 163 LLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCKKLD 222

Query: 284 HPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC 343
           H   I  E  + ++ V WS++I GY ++   +E +KL+  M  E +  +  T  +   SC
Sbjct: 223 HAFNIFCEMPE-RNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFRSC 281

Query: 344 TRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWT 403
              S    G  +H Y +K    +D  +G A ++MY+KC  +  + ++FN        S  
Sbjct: 282 AGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQSHN 341

Query: 404 TLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK- 462
            LI GY       EAL++F  +Q+S ++ D I++   L+AC+      E   L    +K 
Sbjct: 342 ALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQLHGLAVKC 401

Query: 463 --EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPST 502
             +  I +A       +D+  K G + +AC +   M +K + 
Sbjct: 402 GLDFNICVA----NTILDMYAKCGALMEACLIFDDMEIKDAV 439



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 10/156 (6%)

Query: 334 VTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNE 393
           +T   I   C+    ++ G   H  I   G    V + N L+  Y KC ++  +  +F++
Sbjct: 39  LTFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFDK 98

Query: 394 MAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEA 453
           M  RD +SW T+I GY   G  E A  LF  M E     D ++  ++LS     G  +++
Sbjct: 99  MPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPER----DVVSWNSMLSCYLQNGFHRKS 154

Query: 454 ETLFNNVMKEKKIALAIEH-YACYVDLLGKSGKIED 488
             +F      K   L I+H YA +  +L     IED
Sbjct: 155 IEIFT-----KMRLLEIQHDYATFAVVLKACTGIED 185


>gi|222629201|gb|EEE61333.1| hypothetical protein OsJ_15451 [Oryza sativa Japonica Group]
          Length = 1037

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 173/547 (31%), Positives = 301/547 (55%), Gaps = 4/547 (0%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPY 91
           S++ AC Y  +  + G Q+HC  +K+  D    ++N+ + MY+K+     A  LF  +PY
Sbjct: 441 SILGACTYLSSF-YLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPY 499

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQI 151
           +D+ISWN++     QN     ++ M + M L G        +  I+ CS I   E G+QI
Sbjct: 500 KDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQI 559

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQN 211
           H L I  G       V ++L+DLYSK      + ++F Q+   + V   A+I+G + + N
Sbjct: 560 HCLAIKYGICSNHA-VGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNN 618

Query: 212 YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHL-SA 270
            D  I LF+ + ++G+KP+ VT + +L  C+   +   GK +H Y    G  +D  L   
Sbjct: 619 EDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVLYDDTLLGV 678

Query: 271 ALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE 330
           +L  +Y +        +++ E    K++  W++II GY+Q+G    ++  F RMR   + 
Sbjct: 679 SLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVR 738

Query: 331 PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQI 390
            +  T  ++L +C+  +  + G  +H  I K+G     +  +AL++MYSKCG + SS + 
Sbjct: 739 SDEATFASVLKACSDVTAFADGKEIHGLITKSGFGSYETATSALIDMYSKCGDVISSFEA 798

Query: 391 FNEMAAR-DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL 449
           F E+  + D + W ++I G+  +GY +EAL LF +M+E  ++PD +T L +L AC H+GL
Sbjct: 799 FKELKNKQDIMPWNSMIVGFAKNGYADEALLLFQKMEELQIKPDEVTFLGVLIACTHSGL 858

Query: 450 VKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLV 509
           + E    F ++ K   +   ++HYAC++DLLG+ G +++A + +  +P +P   + ++ +
Sbjct: 859 ISEGRHFFGSMRKVYGLTPRLDHYACFIDLLGRGGHLQEAQEAIDQLPFRPDGVVWATYL 918

Query: 510 SACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSK 569
           +ACR+H   E  ++ A +L+E EP+ ++ Y LLS + + +GNW  A+     MR KG++K
Sbjct: 919 AACRMHKDEERGKIAARKLVELEPQYSSTYVLLSSLHAATGNWAEAKVTRESMREKGVAK 978

Query: 570 SYGFSRI 576
             G S I
Sbjct: 979 FPGCSWI 985



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 125/447 (27%), Positives = 234/447 (52%), Gaps = 12/447 (2%)

Query: 56  KSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLE 115
           K GS  D V   ++IS  A   + + A  L  +MP   T++WN++I+   Q+G     L 
Sbjct: 262 KMGSAPDQVTLVTIISTLASSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLG 321

Query: 116 MFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLY 175
           ++++M   G        A ++S  + +     G+Q+HA  ++ G  + +VFV ++L++LY
Sbjct: 322 LYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHG-LDANVFVGSSLINLY 380

Query: 176 SKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLT 235
           +KC     A  VF+    +N V W AM++G + ++  +  I +F+ M R  ++    T  
Sbjct: 381 AKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFV 440

Query: 236 IVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV 295
            +L AC  L     GK +H        D    ++ A + MY +   A+  A+ +F     
Sbjct: 441 SILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSK-YGAIGDAKALFSLIPY 499

Query: 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV 355
           KD + W+++  G +Q+ +  EA+ +  RMRL  I P+ V+    +++C+       G  +
Sbjct: 500 KDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQI 559

Query: 356 HCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYG 415
           HC  +K G+  + ++G++L+++YSK G + SS +IF ++ A   V    LI+G+  +   
Sbjct: 560 HCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNE 619

Query: 416 EEALQLFLEMQESGVEPDAITVLAILSACN---HAGLVKEAE--TLFNNVMKEKKIALAI 470
           +EA+QLF ++ + G++P ++T  +ILS C+   ++ + K+    TL + V+ +  + L +
Sbjct: 620 DEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVLYDDTL-LGV 678

Query: 471 EHYACYVDLLGKSGKIEDACKVVSTMP 497
                Y+    KS  +EDA K+++ MP
Sbjct: 679 SLAGIYL----KSKMLEDANKLLTEMP 701



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 132/515 (25%), Positives = 243/515 (47%), Gaps = 56/515 (10%)

Query: 46  FGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT 105
           +G Q+HC  +KSG  +      +L+ MYAK     +A ++FD +   DTI W+S+I C+ 
Sbjct: 186 YGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYH 245

Query: 106 QNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSV 165
           + G Y  +L +F  M   G       L  IIS  +  G L+     HA            
Sbjct: 246 RVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGRLD-----HA------------ 288

Query: 166 FVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
              TALL                ++M   + V+W A+ISG   S      + L++ M+  
Sbjct: 289 ---TALL----------------KKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSW 329

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
           G+ PTR T   +L A A ++    G+ +H  A   G D +  + ++L+++Y +C      
Sbjct: 330 GLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCG-CPSD 388

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           A+ +F+ +  K++V+W++++ G+ Q+    EA+++F  M    ++ +  T ++IL +CT 
Sbjct: 389 AKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTY 448

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
            S    G  VHC  +K  ++  + + NA ++MYSK G+I  +  +F+ +  +D +SW  L
Sbjct: 449 LSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNAL 508

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
             G   +   EEA+ +   M+  G+ PD ++    ++AC++   ++  ET        K+
Sbjct: 509 TVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSN---IRATET-------GKQ 558

Query: 466 I-ALAIEHYAC--------YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG 516
           I  LAI++  C         +DL  K G +E + K+ + +       I + +    + + 
Sbjct: 559 IHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNN 618

Query: 517 RLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGN 551
             E  ++    L +    ++  ++ +   CS S N
Sbjct: 619 EDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLN 653



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 121/469 (25%), Positives = 213/469 (45%), Gaps = 57/469 (12%)

Query: 43  HQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIIN 102
           H      LH   L+ GS     + +SL+ +Y K  +   A+        R + + +S+++
Sbjct: 81  HSQTCRALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLS 140

Query: 103 CFTQNGFYVRSLEMFREMYLCGFVLKAEL-LAGIISLCSQIGELELGRQIHALVIVDGSF 161
           C  ++G     L  FR +         +  LA ++S CS++G L  GRQ+H  V+  G F
Sbjct: 141 CHARSGSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSG-F 199

Query: 162 ELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMIS-----GCIDSQNYDTGI 216
             SVF   AL+D+Y+KC     A RVF+ +   + + W++MI+     GC     Y   +
Sbjct: 200 SSSVFCEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGC-----YQEAL 254

Query: 217 DLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMY 276
            LF  M + G  P +VTL  ++   A      +G+             DH          
Sbjct: 255 ALFSRMDKMGSAPDQVTLVTIISTLAS-----SGR------------LDH---------- 287

Query: 277 CECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTL 336
                    A  + ++      V W+++I G++QSG     + L+  MR   + P   T 
Sbjct: 288 ---------ATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTF 338

Query: 337 LAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA 396
            ++LS+         G  +H   +  GL+ +V +G++L+N+Y+KCG  + +  +F+    
Sbjct: 339 ASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDLSCE 398

Query: 397 RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG---LVKEA 453
           ++ V W  +++G+  +   EEA+++F  M    ++ D  T ++IL AC +     L K+ 
Sbjct: 399 KNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLGKQV 458

Query: 454 ETL-FNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPS 501
             +   N M    I+L + +    +D+  K G I DA  + S +P K S
Sbjct: 459 HCVTIKNCM---DISLFVANAT--LDMYSKYGAIGDAKALFSLIPYKDS 502


>gi|356546093|ref|XP_003541466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Glycine max]
          Length = 775

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 185/573 (32%), Positives = 311/573 (54%), Gaps = 8/573 (1%)

Query: 9   QTLHLYKQEL--HPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
             +HL++Q +  H + +  N   L  V  A A   +    G Q H  A+K+    D   +
Sbjct: 97  HVMHLFRQLVMAHKT-IVPNAHTLTGVFTA-ASTLSDSRAGRQAHALAVKTACSHDVFAA 154

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY--LCG 124
           +SL++MY K      A  LFDEMP R+ +SW ++I+ +        + E+F+ M     G
Sbjct: 155 SSLLNMYCKTGLVFEARDLFDEMPERNAVSWATMISGYASQELADEAFELFKLMRHEEKG 214

Query: 125 FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
                 +   ++S  +    +  GRQ+H+L + +G   + V V+ AL+ +Y KC     A
Sbjct: 215 KNENEFVFTSVLSALTCYMLVNTGRQVHSLAMKNGLVCI-VSVANALVTMYVKCGSLEDA 273

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
           L+ FE    +N ++W+AM++G     + D  + LF  M + G  P+  TL  V+ AC++ 
Sbjct: 274 LKTFELSGNKNSITWSAMVTGFAQFGDSDKALKLFYDMHQSGELPSEFTLVGVINACSDA 333

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
             +  G+ +HGY+   G++   ++ +AL+ MY +C  ++  AR  FE  +  DVV+W+SI
Sbjct: 334 CAIVEGRQMHGYSLKLGYELQLYVLSALVDMYAKCG-SIVDARKGFECIQQPDVVLWTSI 392

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
           I GY Q+GD   A+ L+ +M+L  + PN +T+ ++L +C+  + L  G  +H  I+K   
Sbjct: 393 ITGYVQNGDYEGALNLYGKMQLGGVIPNDLTMASVLKACSNLAALDQGKQMHAGIIKYNF 452

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
           + ++ IG+AL  MY+KCGS+   ++IF  M ARD +SW  +ISG   +G G E L+LF +
Sbjct: 453 SLEIPIGSALSAMYAKCGSLDDGYRIFWRMPARDVISWNAMISGLSQNGRGNEGLELFEK 512

Query: 425 MQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSG 484
           M   G +PD +T + +LSAC+H GLV      F  +  E  IA  +EHYAC VD+L ++G
Sbjct: 513 MCLEGTKPDNVTFVNLLSACSHMGLVDRGWVYFKMMFDEFNIAPTVEHYACMVDILSRAG 572

Query: 485 KIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSM 544
           K+ +A + + +  +     +   L++A + H   ++      +L+E     ++ Y LLS 
Sbjct: 573 KLHEAKEFIESATVDHGLCLWRILLAASKNHRDYDLGAYAGEKLMELGSLESSAYVLLSS 632

Query: 545 VCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           + +  G W   E V  +M+A+G++K  G S IE
Sbjct: 633 IYTALGKWEDVERVRGMMKARGVTKEPGCSWIE 665



 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 160/529 (30%), Positives = 270/529 (51%), Gaps = 16/529 (3%)

Query: 33  VIKACAYAQTHQHF--GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMP 90
           V++A  +   H+    G  LH   L +GS +   I+NSLI++YAK S    A  +FD + 
Sbjct: 13  VLRALVHCTRHKQLRKGRALHARILVTGSFSSTQIANSLINLYAKCSHFSKANLVFDSIN 72

Query: 91  YRDTISWNSIINCFTQNGFYVRSL---EMFREMYLC--GFVLKAELLAGIISLCSQIGEL 145
            +D +SWN +IN F+Q   +  SL    +FR++ +     V  A  L G+ +  S + + 
Sbjct: 73  NKDVVSWNCLINAFSQQQAHAPSLHVMHLFRQLVMAHKTIVPNAHTLTGVFTAASTLSDS 132

Query: 146 ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISG 205
             GRQ HAL  V  +    VF +++LL++Y K      A  +F++M  RN VSW  MISG
Sbjct: 133 RAGRQAHALA-VKTACSHDVFAASSLLNMYCKTGLVFEARDLFDEMPERNAVSWATMISG 191

Query: 206 CIDSQNYDTGIDLFRAMQRE--GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFD 263
               +  D   +LF+ M+ E  G        T VL A      +  G+ +H  A   G  
Sbjct: 192 YASQELADEAFELFKLMRHEEKGKNENEFVFTSVLSALTCYMLVNTGRQVHSLAMKNGLV 251

Query: 264 FDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSR 323
               ++ AL+ MY +C  +L  A   FE +  K+ + WS+++ G++Q GD  +A+KLF  
Sbjct: 252 CIVSVANALVTMYVKCG-SLEDALKTFELSGNKNSITWSAMVTGFAQFGDSDKALKLFYD 310

Query: 324 MRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS 383
           M      P+  TL+ ++++C+    +  G  +H Y +K G    + + +AL++MY+KCGS
Sbjct: 311 MHQSGELPSEFTLVGVINACSDACAIVEGRQMHGYSLKLGYELQLYVLSALVDMYAKCGS 370

Query: 384 ITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
           I  + + F  +   D V WT++I+GY  +G  E AL L+ +MQ  GV P+ +T+ ++L A
Sbjct: 371 IVDARKGFECIQQPDVVLWTSIITGYVQNGDYEGALNLYGKMQLGGVIPNDLTMASVLKA 430

Query: 444 CNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTR 503
           C++   + + + +   ++K    +L I   +    +  K G ++D  ++   MP +    
Sbjct: 431 CSNLAALDQGKQMHAGIIK-YNFSLEIPIGSALSAMYAKCGSLDDGYRIFWRMPARDVIS 489

Query: 504 ILSSLVSACRIHGR-LEVAEMLAHQLIEA-EPENAANYTLLSMVCSESG 550
             ++++S    +GR  E  E+     +E  +P+N     LLS  CS  G
Sbjct: 490 -WNAMISGLSQNGRGNEGLELFEKMCLEGTKPDNVTFVNLLS-ACSHMG 536



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 78/174 (44%), Gaps = 15/174 (8%)

Query: 324 MRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS 383
           M L  +    + +L  L  CTR   L  G  +H  I+  G      I N+L+N+Y+KC  
Sbjct: 1   MPLLPLSHQHLQVLRALVHCTRHKQLRKGRALHARILVTGSFSSTQIANSLINLYAKCSH 60

Query: 384 ITSSHQIFNEMAARDFVSWTTLISGYG---FHGYGEEALQLF--LEMQESGVEPDAITVL 438
            + ++ +F+ +  +D VSW  LI+ +     H      + LF  L M    + P+A T+ 
Sbjct: 61  FSKANLVFDSINNKDVVSWNCLINAFSQQQAHAPSLHVMHLFRQLVMAHKTIVPNAHTLT 120

Query: 439 AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKV 492
            + +A         A TL ++    +  ALA++  AC  D+   S  +   CK 
Sbjct: 121 GVFTA---------ASTLSDSRAGRQAHALAVK-TACSHDVFAASSLLNMYCKT 164


>gi|115459414|ref|NP_001053307.1| Os04g0514500 [Oryza sativa Japonica Group]
 gi|32482936|emb|CAE02340.1| OSJNBb0072M01.1 [Oryza sativa Japonica Group]
 gi|38345689|emb|CAD41109.2| OSJNBb0070J16.5 [Oryza sativa Japonica Group]
 gi|113564878|dbj|BAF15221.1| Os04g0514500 [Oryza sativa Japonica Group]
 gi|215768472|dbj|BAH00701.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218195211|gb|EEC77638.1| hypothetical protein OsI_16630 [Oryza sativa Indica Group]
          Length = 1027

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 176/577 (30%), Positives = 313/577 (54%), Gaps = 5/577 (0%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V     E+ + +++  +  + L ++     S++ AC Y  +  + G Q+HC  +K+  D 
Sbjct: 402 VQNELPEEAIRMFQYMMRYT-LQTDEFTFVSILGACTYLSSF-YLGKQVHCVTIKNCMDI 459

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
              ++N+ + MY+K+     A  LF  +PY+D+ISWN++     QN     ++ M + M 
Sbjct: 460 SLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMR 519

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
           L G        +  I+ CS I   E G+QIH L I  G       V ++L+DLYSK    
Sbjct: 520 LHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNHA-VGSSLIDLYSKHGDV 578

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             + ++F Q+   + V   A+I+G + + N D  I LF+ + ++G+KP+ VT + +L  C
Sbjct: 579 ESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGC 638

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHL-SAALMHMYCECTEALHPARIIFERTKVKDVVI 300
           +   +   GK +H Y    G  +D  L   +L  +Y +        +++ E    K++  
Sbjct: 639 SGSLNSAIGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFE 698

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           W++II GY+Q+G    ++  F RMR   +  +  T  ++L +C+  +  + G  +H  I 
Sbjct: 699 WTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLKACSDVTAFADGKEIHGLIT 758

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFHGYGEEAL 419
           K+G     +  +AL++MYSKCG + SS + F E+  + D + W ++I G+  +GY +EAL
Sbjct: 759 KSGFGSYETATSALIDMYSKCGDVISSFEAFKELKNKQDIMPWNSMIVGFAKNGYADEAL 818

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479
            LF +M+E  ++PD +T L +L AC H+GL+ E    F ++ K   +   ++HYAC++DL
Sbjct: 819 LLFQKMEELQIKPDEVTFLGVLIACTHSGLISEGRHFFGSMRKVYGLTPRLDHYACFIDL 878

Query: 480 LGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANY 539
           LG+ G +++A + +  +P +P   + ++ ++ACR+H   E  ++ A +L+E EP+ ++ Y
Sbjct: 879 LGRGGHLQEAQEAIDQLPFRPDGVVWATYLAACRMHKDEERGKIAARKLVELEPQYSSTY 938

Query: 540 TLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
            LLS + + +GNW  A+     MR KG++K  G S I
Sbjct: 939 VLLSSLHAATGNWAEAKVTRESMREKGVAKFPGCSWI 975



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 125/447 (27%), Positives = 234/447 (52%), Gaps = 12/447 (2%)

Query: 56  KSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLE 115
           K GS  D V   ++IS  A   + + A  L  +MP   T++WN++I+   Q+G     L 
Sbjct: 252 KMGSAPDQVTLVTIISTLASSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLG 311

Query: 116 MFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLY 175
           ++++M   G        A ++S  + +     G+Q+HA  ++ G  + +VFV ++L++LY
Sbjct: 312 LYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHG-LDANVFVGSSLINLY 370

Query: 176 SKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLT 235
           +KC     A  VF+    +N V W AM++G + ++  +  I +F+ M R  ++    T  
Sbjct: 371 AKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFV 430

Query: 236 IVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV 295
            +L AC  L     GK +H        D    ++ A + MY +   A+  A+ +F     
Sbjct: 431 SILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSK-YGAIGDAKALFSLIPY 489

Query: 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV 355
           KD + W+++  G +Q+ +  EA+ +  RMRL  I P+ V+    +++C+       G  +
Sbjct: 490 KDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQI 549

Query: 356 HCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYG 415
           HC  +K G+  + ++G++L+++YSK G + SS +IF ++ A   V    LI+G+  +   
Sbjct: 550 HCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNE 609

Query: 416 EEALQLFLEMQESGVEPDAITVLAILSACN---HAGLVKEAE--TLFNNVMKEKKIALAI 470
           +EA+QLF ++ + G++P ++T  +ILS C+   ++ + K+    TL + V+ +  + L +
Sbjct: 610 DEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVLYDDTL-LGV 668

Query: 471 EHYACYVDLLGKSGKIEDACKVVSTMP 497
                Y+    KS  +EDA K+++ MP
Sbjct: 669 SLAGIYL----KSKMLEDANKLLTEMP 691



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 136/531 (25%), Positives = 249/531 (46%), Gaps = 57/531 (10%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEM 89
           L  V+ AC+       +G Q+HC  +KSG  +      +L+ MYAK     +A ++FD +
Sbjct: 161 LAVVLSACSRVGVLA-YGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRVFDGI 219

Query: 90  PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGR 149
              DTI W+S+I C+ + G Y  +L +F  M   G       L  IIS  +  G L+   
Sbjct: 220 ACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGRLD--- 276

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
             HA               TALL                ++M   + V+W A+ISG   S
Sbjct: 277 --HA---------------TALL----------------KKMPTPSTVAWNAVISGHAQS 303

Query: 210 QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS 269
                 + L++ M+  G+ PTR T   +L A A ++    G+ +H  A   G D +  + 
Sbjct: 304 GLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVG 363

Query: 270 AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
           ++L+++Y +C      A+ +F+ +  K++V+W++++ G+ Q+    EA+++F  M    +
Sbjct: 364 SSLINLYAKCG-CPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTL 422

Query: 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
           + +  T ++IL +CT  S    G  VHC  +K  ++  + + NA ++MYSK G+I  +  
Sbjct: 423 QTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKA 482

Query: 390 IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL 449
           +F+ +  +D +SW  L  G   +   EEA+ +   M+  G+ PD ++    ++AC++   
Sbjct: 483 LFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSN--- 539

Query: 450 VKEAETLFNNVMKEKKI-ALAIEHYAC--------YVDLLGKSGKIEDACKVVSTMPMKP 500
           ++  ET        K+I  LAI++  C         +DL  K G +E + K+ + +    
Sbjct: 540 IRATET-------GKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASS 592

Query: 501 STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGN 551
              I + +    + +   E  ++    L +    ++  ++ +   CS S N
Sbjct: 593 IVPINALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLN 643



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 120/462 (25%), Positives = 212/462 (45%), Gaps = 57/462 (12%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           LH   L+ GS     + +SL+ +Y K  +   A+        R + + +S+++C  ++G 
Sbjct: 78  LHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARSGS 137

Query: 110 YVRSLEMFREMYLCGFVLKAEL-LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
               L  FR +         +  LA ++S CS++G L  GRQ+H  V+  G F  SVF  
Sbjct: 138 PGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSG-FSSSVFCE 196

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMIS-----GCIDSQNYDTGIDLFRAMQ 223
            AL+D+Y+KC     A RVF+ +   + + W++MI+     GC     Y   + LF  M 
Sbjct: 197 AALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGC-----YQEALALFSRMD 251

Query: 224 REGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEAL 283
           + G  P +VTL  ++   A      +G+             DH                 
Sbjct: 252 KMGSAPDQVTLVTIISTLAS-----SGR------------LDH----------------- 277

Query: 284 HPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC 343
             A  + ++      V W+++I G++QSG     + L+  MR   + P   T  ++LS+ 
Sbjct: 278 --ATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAA 335

Query: 344 TRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWT 403
                   G  +H   +  GL+ +V +G++L+N+Y+KCG  + +  +F+    ++ V W 
Sbjct: 336 ANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWN 395

Query: 404 TLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG---LVKEAETL-FNN 459
            +++G+  +   EEA+++F  M    ++ D  T ++IL AC +     L K+   +   N
Sbjct: 396 AMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKN 455

Query: 460 VMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPS 501
            M    I+L + +    +D+  K G I DA  + S +P K S
Sbjct: 456 CM---DISLFVANAT--LDMYSKYGAIGDAKALFSLIPYKDS 492



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 112/219 (51%), Gaps = 4/219 (1%)

Query: 251 KAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP-ARIIFERTKVKDVVIWSSIIRGYS 309
           +A+HG     G      L  +L+ +YC+     +  + + +   +       SS++  ++
Sbjct: 76  RALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAA--SSLLSCHA 133

Query: 310 QSGDLSEAMKLFSRMRLERI-EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
           +SG   + +  F  +R      P+   L  +LS+C+R   L++G  VHC ++K+G +  V
Sbjct: 134 RSGSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSV 193

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
               AL++MY+KCG + ++ ++F+ +A  D + W+++I+ Y   G  +EAL LF  M + 
Sbjct: 194 FCEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKM 253

Query: 429 GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIA 467
           G  PD +T++ I+S    +G +  A  L   +     +A
Sbjct: 254 GSAPDQVTLVTIISTLASSGRLDHATALLKKMPTPSTVA 292


>gi|449484072|ref|XP_004156776.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Cucumis sativus]
          Length = 754

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 190/558 (34%), Positives = 303/558 (54%), Gaps = 5/558 (0%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           E+H  G   N   + S  +AC         G  LH  ALK+G     V+ ++++SMY++ 
Sbjct: 200 EMHRIGGTPNYKTIGSGFQACVDLDALVE-GKCLHGLALKNGFLCFEVVKSTILSMYSRC 258

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
             PE AY+ F ++  +D ISW SII   ++ G     L +F EM     +    +++ ++
Sbjct: 259 GSPEEAYRCFCKLDQKDLISWTSIIAVHSKFGLMSECLHLFWEMQASEIIPDEIVISCML 318

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
                   +  G+  HA  I+     LS     ALL +Y K  H   A ++F      +E
Sbjct: 319 MGFGNSDRIFEGKAFHAR-ILKQCCALSGITHNALLSMYCKFGHLGTANKIFHSFHKSSE 377

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
             W+ MI G  +    +  I   R M   G +P   +L  V+ +C+++  +  G++IH Y
Sbjct: 378 -DWSTMILGYSNMGQKEKCISFLREMLLLGREPDLNSLVSVISSCSQVGAINIGRSIHCY 436

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
           A       +  ++ +LM MY +        RI F RT  +DV+ W+++I  Y QSG L+E
Sbjct: 437 AIKNSIIENVSVANSLMDMYGKSGHVTATWRI-FHRTLQRDVISWNTLISSYKQSGILAE 495

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
           A+ LF +M  E++ PN VT + +LS+C   + L  G  +H YI + G   +++I  AL++
Sbjct: 496 AIILFDKMVKEKVYPNKVTCIIVLSACAHLASLDEGEKIHQYIKENGFESNITIRTALID 555

Query: 377 MYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAIT 436
           MY+KCG + +S ++FN    RD + W  +IS YG HG+ E A+++F  M+ES ++P+A T
Sbjct: 556 MYAKCGELETSRKLFNSTEERDVILWNVMISNYGMHGHVESAMEIFQLMEESNIKPNAQT 615

Query: 437 VLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
            L++LSACNH G V E   LF+  M++  I  +++HYA  +DLLG+SG +E A  +V +M
Sbjct: 616 FLSLLSACNHTGHVLEGRHLFDR-MQKYGIEPSLKHYASIIDLLGRSGSLEAAEALVLSM 674

Query: 497 PMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAE 556
           P+ P   +  SL+SAC+IH   EV   LA   IE++P+N   Y +LS + S  G W   E
Sbjct: 675 PITPDGTVWGSLLSACKIHNEFEVGVRLARYAIESDPKNDGYYIILSDLYSCLGRWDEVE 734

Query: 557 EVWRVMRAKGLSKSYGFS 574
           +V  +M+ +G+ K  G+S
Sbjct: 735 KVRDMMKKRGVEKRAGWS 752



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 127/525 (24%), Positives = 244/525 (46%), Gaps = 17/525 (3%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
            H   + +G+  +   +  L++ YA   KP  +  LF  +  +D   WNSII     NG 
Sbjct: 29  FHSLIITTGNSNNVFFATKLMAFYAYHRKPAFSTHLFRLIHSKDIFLWNSIIQSHFSNGD 88

Query: 110 YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVST 169
           Y R+ + + +M     +     +  ++S C+++     G  IH L    G F  +  + +
Sbjct: 89  YQRAFDFYLQMRASSSLPNQFTVPMVVSTCAELMMFNHGMNIHGLTSKLGLFVGNSAIGS 148

Query: 170 ALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKP 229
           + + +YSKC H   A  +F ++ +++ V+WTA+I G + +     G+     M R G  P
Sbjct: 149 SFIYMYSKCGHVESASIMFSEITVKDVVTWTALIVGYVQNNESGRGLKCLFEMHRIGGTP 208

Query: 230 TRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARII 289
              T+     AC +L  L  GK +HG A   GF     + + ++ MY  C       R  
Sbjct: 209 NYKTIGSGFQACVDLDALVEGKCLHGLALKNGFLCFEVVKSTILSMYSRCGSPEEAYR-C 267

Query: 290 FERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFL 349
           F +   KD++ W+SII  +S+ G +SE + LF  M+   I P+ + +  +L        +
Sbjct: 268 FCKLDQKDLISWTSIIAVHSKFGLMSECLHLFWEMQASEIIPDEIVISCMLMGFGNSDRI 327

Query: 350 SHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGY 409
             G   H  I+K          NAL++MY K G + ++++IF+    +    W+T+I GY
Sbjct: 328 FEGKAFHARILKQCCALSGITHNALLSMYCKFGHLGTANKIFHSF-HKSSEDWSTMILGY 386

Query: 410 GFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLF-----NNVMKEK 464
              G  E+ +    EM   G EPD  ++++++S+C+  G +    ++      N++++  
Sbjct: 387 SNMGQKEKCISFLREMLLLGREPDLNSLVSVISSCSQVGAINIGRSIHCYAIKNSIIENV 446

Query: 465 KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEML 524
            +A ++      +D+ GKSG +    ++     ++      ++L+S+ +  G L  A +L
Sbjct: 447 SVANSL------MDMYGKSGHVTATWRIFHR-TLQRDVISWNTLISSYKQSGILAEAIIL 499

Query: 525 AHQLIEAE--PENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567
             ++++ +  P       +LS  C+   +    E++ + ++  G 
Sbjct: 500 FDKMVKEKVYPNKVTCIIVLS-ACAHLASLDEGEKIHQYIKENGF 543


>gi|334185093|ref|NP_187175.2| mitochondrial editing factor 19 [Arabidopsis thaliana]
 gi|218546759|sp|Q9MA95.2|PP214_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g05240
 gi|332640689|gb|AEE74210.1| mitochondrial editing factor 19 [Arabidopsis thaliana]
          Length = 565

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 178/546 (32%), Positives = 293/546 (53%), Gaps = 18/546 (3%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPES-----AYQLFDEMPYRDTISWNSIINC 103
           QLH   +KS    + +  + LI      + PE+     A  +F+ +       WNS+I  
Sbjct: 24  QLHGLMIKSSVIRNVIPLSRLIDFCT--TCPETMNLSYARSVFESIDCPSVYIWNSMIRG 81

Query: 104 FTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFEL 163
           ++ +    ++L  ++EM   G+         ++  CS + +++ G  +H  V+  G FE+
Sbjct: 82  YSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTG-FEV 140

Query: 164 SVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQ 223
           +++VST LL +Y  C      LRVFE +   N V+W ++ISG +++  +   I+ FR MQ
Sbjct: 141 NMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAFREMQ 200

Query: 224 REGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFD--------FDHHLSAALMHM 275
             GVK     +  +L+AC   +D+  GK  HG+    GFD        F+  L+ +L+ M
Sbjct: 201 SNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLGFDPYFQSKVGFNVILATSLIDM 260

Query: 276 YCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVT 335
           Y +C + L  AR +F+    + +V W+SII GYSQ+GD  EA+ +F  M    I P+ VT
Sbjct: 261 YAKCGD-LRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDLGIAPDKVT 319

Query: 336 LLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA 395
            L+++ +   Q     G  +H Y+ K G   D +I  AL+NMY+K G   S+ + F ++ 
Sbjct: 320 FLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAKTGDAESAKKAFEDLE 379

Query: 396 ARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG-VEPDAITVLAILSACNHAGLVKEAE 454
            +D ++WT +I G   HG+G EAL +F  MQE G   PD IT L +L AC+H GLV+E +
Sbjct: 380 KKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGITYLGVLYACSHIGLVEEGQ 439

Query: 455 TLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRI 514
             F  +     +   +EHY C VD+L ++G+ E+A ++V TMP+KP+  I  +L++ C I
Sbjct: 440 RYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVKPNVNIWGALLNGCDI 499

Query: 515 HGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFS 574
           H  LE+ + +   + E E   +  Y LLS + +++G W   + +   M++K + K  G S
Sbjct: 500 HENLELTDRIRSMVAEPEELGSGIYVLLSNIYAKAGRWADVKLIRESMKSKRVDKVLGHS 559

Query: 575 RIENEY 580
            +E  +
Sbjct: 560 SVETMF 565



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 118/477 (24%), Positives = 230/477 (48%), Gaps = 28/477 (5%)

Query: 13  LYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISM 72
           ++ QE+   G   +    P V+KAC+  +  Q FG  +H   +K+G + +  +S  L+ M
Sbjct: 93  IFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQ-FGSCVHGFVVKTGFEVNMYVSTCLLHM 151

Query: 73  YAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELL 132
           Y    +     ++F+++P  + ++W S+I+ F  N  +  ++E FREM   G      ++
Sbjct: 152 YMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAFREMQSNGVKANETIM 211

Query: 133 AGIISLCSQIGELELGRQIHALVI---VDGSFE----LSVFVSTALLDLYSKCHHWLIAL 185
             ++  C +  ++  G+  H  +     D  F+     +V ++T+L+D+Y+KC     A 
Sbjct: 212 VDLLVACGRCKDIVTGKWFHGFLQGLGFDPYFQSKVGFNVILATSLIDMYAKCGDLRTAR 271

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA----- 240
            +F+ M  R  VSW ++I+G   + + +  + +F  M   G+ P +VT   V+ A     
Sbjct: 272 YLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDLGIAPDKVTFLSVIRASMIQG 331

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
           C++L     G++IH Y    GF  D  +  AL++MY +  +A   A+  FE  + KD + 
Sbjct: 332 CSQL-----GQSIHAYVSKTGFVKDAAIVCALVNMYAKTGDA-ESAKKAFEDLEKKDTIA 385

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLE-RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
           W+ +I G +  G  +EA+ +F RM+ +    P+ +T L +L +C+    +  G      +
Sbjct: 386 WTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGITYLGVLYACSHIGLVEEGQRYFAEM 445

Query: 360 MKA-GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS-WTTLISGYGFHGYGEE 417
               GL   V     ++++ S+ G    + ++   M  +  V+ W  L++G   H    E
Sbjct: 446 RDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVKPNVNIWGALLNGCDIH----E 501

Query: 418 ALQLFLEMQESGVEPDAI-TVLAILSACNHAGLVKEAET-LFNNVMKEKKIALAIEH 472
            L+L   ++    EP+ + + + +L +  +A   + A+  L    MK K++   + H
Sbjct: 502 NLELTDRIRSMVAEPEELGSGIYVLLSNIYAKAGRWADVKLIRESMKSKRVDKVLGH 558


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 168/497 (33%), Positives = 284/497 (57%), Gaps = 4/497 (0%)

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY-LCGFVLKAELLAGIISLCS 140
           AY +F      D ++WNS++  F  +    R+L+ + EM      V        ++  C+
Sbjct: 31  AYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCA 90

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
            + E ++G+ +H  V V       +++ T LL++Y+ C     A  +FE+M  RN+V WT
Sbjct: 91  LLLEFKVGKVLHGQV-VKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWT 149

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
           +MISG + +   +  + L++ M+ +G  P  VT+  ++ ACAEL+DL  G  +H +    
Sbjct: 150 SMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREM 209

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
                  L +AL++MY +C + L  AR +F++   KDV  WS++I GY ++   +EA++L
Sbjct: 210 DMKICAVLGSALVNMYAKCGD-LKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQL 268

Query: 321 FSRMRL-ERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           F  +     + PN VT+LA++S+C +   L  G  VH YI +      VS+ N+L++M+S
Sbjct: 269 FREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFS 328

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           KCG I ++ +IF+ M+ +D +SW ++++G+  HG G EAL  F  MQ + ++PD IT + 
Sbjct: 329 KCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIG 388

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           +L+AC+HAGLV+E + LF  +     + L  EHY C VDLL ++G + +A + +  MP++
Sbjct: 389 VLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQ 448

Query: 500 PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVW 559
           P   I  S++ ACR++  LE+ E  A  L++ EP N   Y LLS + ++   W   ++V 
Sbjct: 449 PDGAIWGSMLGACRVYNNLELGEEAARFLLKLEPTNDGVYILLSNIYAKRKMWNEVKKVR 508

Query: 560 RVMRAKGLSKSYGFSRI 576
            +M  KG+ K+ G S +
Sbjct: 509 ELMNEKGIQKTPGCSSV 525



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 106/444 (23%), Positives = 224/444 (50%), Gaps = 14/444 (3%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V+ +   + L  Y + L  S    +    PS++K CA     +  G  LH   +K    +
Sbjct: 54  VNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFK-VGKVLHGQVVKYMLHS 112

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D  I  +L++MYA     +SA  LF+ M +R+ + W S+I+ + +N     +L ++++M 
Sbjct: 113 DLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKME 172

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
             GF      +A ++S C+++ +L +G ++H+  I +   ++   + +AL+++Y+KC   
Sbjct: 173 EDGFSPDEVTMATLVSACAELKDLGVGMKLHSH-IREMDMKICAVLGSALVNMYAKCGDL 231

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQ-REGVKPTRVTLTIVLLA 240
             A +VF+++  ++  +W+A+I G + +      + LFR +     ++P  VT+  V+ A
Sbjct: 232 KTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISA 291

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
           CA+L DL  G+ +H Y           L+ +L+ M+ +C + +  A+ IF+    KD++ 
Sbjct: 292 CAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGD-IDAAKRIFDSMSYKDLIS 350

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           W+S++ G++  G   EA+  F  M+   ++P+ +T + +L++C+    +  G  +  Y +
Sbjct: 351 WNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLF-YEI 409

Query: 361 KA--GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISG---YGFHGY 414
           +A  G+         ++++  + G +  + +    M  + D   W +++     Y     
Sbjct: 410 EALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLEL 469

Query: 415 GEEALQLFLEMQESGVEPDAITVL 438
           GEEA +  L+++ +    D + +L
Sbjct: 470 GEEAARFLLKLEPTN---DGVYIL 490


>gi|116310835|emb|CAH67622.1| OSIGBa0140J09.3 [Oryza sativa Indica Group]
          Length = 1027

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 176/577 (30%), Positives = 312/577 (54%), Gaps = 5/577 (0%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V     E+ + +++  +  + L ++     S++ AC Y  +  + G Q+HC  +K+  D 
Sbjct: 402 VQNELPEEAIRMFQYMMRYT-LQTDEFTFVSILGACTYLSSF-YLGKQVHCVTIKNCMDI 459

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
              ++N+ + MY+K+     A  LF  +PY+D+ISWN++     QN     ++ M + M 
Sbjct: 460 SLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMR 519

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
           L G        +  I+ CS I   E G+QIH L I  G       V ++L+DLYSK    
Sbjct: 520 LHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNHA-VGSSLIDLYSKHGDV 578

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             + ++F Q+   + V   A+I+G + + N D  I LF+ + ++G+KP+ VT + +L  C
Sbjct: 579 ESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGC 638

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHL-SAALMHMYCECTEALHPARIIFERTKVKDVVI 300
           +   +   GK +H Y    G  +D  L   +L  +Y +        +++ E    K++  
Sbjct: 639 SGSLNSAIGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFE 698

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           W++II GY+Q+G    ++  F RMR   +  +  T  ++L +C+  +  + G  +H  I 
Sbjct: 699 WTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLKACSDVTAFADGKEIHGLIT 758

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFHGYGEEAL 419
           K+G     +  +AL++MYSKCG + SS + F E+  + D + W ++I G+  +GY +EAL
Sbjct: 759 KSGFGSYETATSALIDMYSKCGDVISSFEAFKELKNKQDIMPWNSMIVGFAKNGYADEAL 818

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479
            LF +M+E  ++PD +T L +L AC H+GL+ E    F  + K   +   ++HYAC++DL
Sbjct: 819 LLFQKMEELQIKPDEVTFLGVLIACTHSGLISEGRHFFGPMRKVYGLTPRLDHYACFIDL 878

Query: 480 LGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANY 539
           LG+ G +++A + +  +P +P   + ++ ++ACR+H   E  ++ A +L+E EP+ ++ Y
Sbjct: 879 LGRGGHLQEAQEAIDQLPFRPDGVVWATYLAACRMHKDEERGKIAARKLVELEPQYSSTY 938

Query: 540 TLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
            LLS + + +GNW  A+     MR KG++K  G S I
Sbjct: 939 VLLSSLHAATGNWAEAKVTRESMREKGVAKFPGCSWI 975



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 125/447 (27%), Positives = 234/447 (52%), Gaps = 12/447 (2%)

Query: 56  KSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLE 115
           K GS  D V   ++IS  A   + + A  L  +MP   T++WN++I+   Q+G     L 
Sbjct: 252 KMGSAPDQVTLVTIISTLASSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLG 311

Query: 116 MFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLY 175
           ++++M   G        A ++S  + +     G+Q+HA  ++ G  + +VFV ++L++LY
Sbjct: 312 LYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHG-LDANVFVGSSLINLY 370

Query: 176 SKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLT 235
           +KC     A  VF+    +N V W AM++G + ++  +  I +F+ M R  ++    T  
Sbjct: 371 AKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFV 430

Query: 236 IVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV 295
            +L AC  L     GK +H        D    ++ A + MY +   A+  A+ +F     
Sbjct: 431 SILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSK-YGAIGDAKALFSLIPY 489

Query: 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV 355
           KD + W+++  G +Q+ +  EA+ +  RMRL  I P+ V+    +++C+       G  +
Sbjct: 490 KDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQI 549

Query: 356 HCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYG 415
           HC  +K G+  + ++G++L+++YSK G + SS +IF ++ A   V    LI+G+  +   
Sbjct: 550 HCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNE 609

Query: 416 EEALQLFLEMQESGVEPDAITVLAILSACN---HAGLVKEAE--TLFNNVMKEKKIALAI 470
           +EA+QLF ++ + G++P ++T  +ILS C+   ++ + K+    TL + V+ +  + L +
Sbjct: 610 DEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVLYDDTL-LGV 668

Query: 471 EHYACYVDLLGKSGKIEDACKVVSTMP 497
                Y+    KS  +EDA K+++ MP
Sbjct: 669 SLAGIYL----KSKMLEDANKLLTEMP 691



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 136/531 (25%), Positives = 249/531 (46%), Gaps = 57/531 (10%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEM 89
           L  V+ AC+       +G Q+HC  +KSG  +      +L+ MYAK     +A ++FD +
Sbjct: 161 LAVVLSACSRVGVLA-YGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRVFDGI 219

Query: 90  PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGR 149
              DTI W+S+I C+ + G Y  +L +F  M   G       L  IIS  +  G L+   
Sbjct: 220 ACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGRLD--- 276

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
             HA               TALL                ++M   + V+W A+ISG   S
Sbjct: 277 --HA---------------TALL----------------KKMPTPSTVAWNAVISGHAQS 303

Query: 210 QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS 269
                 + L++ M+  G+ PTR T   +L A A ++    G+ +H  A   G D +  + 
Sbjct: 304 GLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVG 363

Query: 270 AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
           ++L+++Y +C      A+ +F+ +  K++V+W++++ G+ Q+    EA+++F  M    +
Sbjct: 364 SSLINLYAKCG-CPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTL 422

Query: 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
           + +  T ++IL +CT  S    G  VHC  +K  ++  + + NA ++MYSK G+I  +  
Sbjct: 423 QTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKA 482

Query: 390 IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL 449
           +F+ +  +D +SW  L  G   +   EEA+ +   M+  G+ PD ++    ++AC++   
Sbjct: 483 LFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSN--- 539

Query: 450 VKEAETLFNNVMKEKKI-ALAIEHYAC--------YVDLLGKSGKIEDACKVVSTMPMKP 500
           ++  ET        K+I  LAI++  C         +DL  K G +E + K+ + +    
Sbjct: 540 IRATET-------GKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASS 592

Query: 501 STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGN 551
              I + +    + +   E  ++    L +    ++  ++ +   CS S N
Sbjct: 593 IVPINALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLN 643



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 120/462 (25%), Positives = 212/462 (45%), Gaps = 57/462 (12%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           LH   L+ GS     + +SL+ +Y K  +   A+        R + + +S+++C  ++G 
Sbjct: 78  LHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARSGS 137

Query: 110 YVRSLEMFREMYLCGFVLKAEL-LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
               L  FR +         +  LA ++S CS++G L  GRQ+H  V+  G F  SVF  
Sbjct: 138 PGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSG-FSSSVFCE 196

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMIS-----GCIDSQNYDTGIDLFRAMQ 223
            AL+D+Y+KC     A RVF+ +   + + W++MI+     GC     Y   + LF  M 
Sbjct: 197 AALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGC-----YQEALALFSRMD 251

Query: 224 REGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEAL 283
           + G  P +VTL  ++   A      +G+             DH                 
Sbjct: 252 KMGSAPDQVTLVTIISTLAS-----SGR------------LDH----------------- 277

Query: 284 HPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC 343
             A  + ++      V W+++I G++QSG     + L+  MR   + P   T  ++LS+ 
Sbjct: 278 --ATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAA 335

Query: 344 TRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWT 403
                   G  +H   +  GL+ +V +G++L+N+Y+KCG  + +  +F+    ++ V W 
Sbjct: 336 ANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWN 395

Query: 404 TLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG---LVKEAETL-FNN 459
            +++G+  +   EEA+++F  M    ++ D  T ++IL AC +     L K+   +   N
Sbjct: 396 AMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKN 455

Query: 460 VMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPS 501
            M    I+L + +    +D+  K G I DA  + S +P K S
Sbjct: 456 CM---DISLFVANAT--LDMYSKYGAIGDAKALFSLIPYKDS 492



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 112/219 (51%), Gaps = 4/219 (1%)

Query: 251 KAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP-ARIIFERTKVKDVVIWSSIIRGYS 309
           +A+HG     G      L  +L+ +YC+     +  + + +   +       SS++  ++
Sbjct: 76  RALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAA--SSLLSCHA 133

Query: 310 QSGDLSEAMKLFSRMRLERI-EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
           +SG   + +  F  +R      P+   L  +LS+C+R   L++G  VHC ++K+G +  V
Sbjct: 134 RSGSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSV 193

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
               AL++MY+KCG + ++ ++F+ +A  D + W+++I+ Y   G  +EAL LF  M + 
Sbjct: 194 FCEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKM 253

Query: 429 GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIA 467
           G  PD +T++ I+S    +G +  A  L   +     +A
Sbjct: 254 GSAPDQVTLVTIISTLASSGRLDHATALLKKMPTPSTVA 292


>gi|449460752|ref|XP_004148109.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Cucumis sativus]
          Length = 784

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 190/560 (33%), Positives = 304/560 (54%), Gaps = 5/560 (0%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           E+H  G   N   + S  +AC         G  LH  ALK+G     V+ ++++SMY++ 
Sbjct: 230 EMHRIGGTPNYKTIGSGFQACVDLDALVE-GKCLHGLALKNGFLCFEVVKSTILSMYSRC 288

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
             PE AY+ F ++  +D ISW SII   ++ G     L +F EM     +    +++ ++
Sbjct: 289 GSPEEAYRCFCKLDQKDLISWTSIIAVHSKFGLMSECLHLFWEMQASEIIPDEIVISCML 348

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
                   +  G+  HA  I+     LS     ALL +Y K  H   A ++F      +E
Sbjct: 349 MGFGNSDRIFEGKAFHAR-ILKQCCALSGITHNALLSMYCKFGHLGTANKIFHSFHKSSE 407

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
             W+ MI G  +    +  I   R M   G +P   +L  V+ +C+++  +  G++IH Y
Sbjct: 408 -DWSTMILGYSNMGQKEKCISFLREMLLLGREPDLNSLVSVISSCSQVGAINIGRSIHCY 466

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
           A       +  ++ +LM MY +        RI F RT  +DV+ W+++I  Y QSG L+E
Sbjct: 467 AIKNSIIENVSVANSLMDMYGKSGHVTATWRI-FHRTLQRDVISWNTLISSYKQSGILAE 525

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
           A+ LF +M  E++ PN VT + +LS+C   + L  G  +H YI + G   +++I  AL++
Sbjct: 526 AIILFDKMVKEKVYPNKVTCIIVLSACAHLASLDEGEKIHQYIKENGFESNITIRTALID 585

Query: 377 MYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAIT 436
           MY+KCG + +S ++FN    RD + W  +IS YG HG+ E A+++F  M+ES ++P+A T
Sbjct: 586 MYAKCGELETSRKLFNSTEERDVILWNVMISNYGMHGHVESAMEIFQLMEESNIKPNAQT 645

Query: 437 VLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
            L++LSACNH G V E   LF+  M++  I  +++HYA  +DLLG+SG +E A  +V +M
Sbjct: 646 FLSLLSACNHTGHVLEGRHLFDR-MQKYGIEPSLKHYASIIDLLGRSGSLEAAEALVLSM 704

Query: 497 PMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAE 556
           P+ P   +  SL+SAC+IH   EV   LA   IE++P+N   Y +LS + S  G W   E
Sbjct: 705 PITPDGTVWGSLLSACKIHNEFEVGVRLARYAIESDPKNDGYYIILSDLYSCLGRWDEVE 764

Query: 557 EVWRVMRAKGLSKSYGFSRI 576
           +V  +M+ +G+ K  G+S +
Sbjct: 765 KVRDMMKKRGVEKRAGWSAL 784



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 129/527 (24%), Positives = 246/527 (46%), Gaps = 17/527 (3%)

Query: 48  LQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQN 107
           LQ H   + +G+  +   +  L++ YA   KP  +  LF  +  +D   WNSII     N
Sbjct: 57  LQFHSLIITTGNSNNVFFATKLMAFYAYHRKPAFSTHLFRLIHSKDIFLWNSIIQSHFSN 116

Query: 108 GFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFV 167
           G Y R+ + + +M     +     +  ++S C+++     G  IH L    G F  +  +
Sbjct: 117 GDYQRAFDFYLQMRASSSLPNQFTVPMVVSTCAELMMFNHGMNIHGLTSKLGLFVGNSAI 176

Query: 168 STALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV 227
            ++ + +YSKC H   A  +F ++ +++ V+WTA+I G + +     G+     M R G 
Sbjct: 177 GSSFIYMYSKCGHVESASIMFSEITVKDVVTWTALIVGYVQNNESGRGLKCLFEMHRIGG 236

Query: 228 KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPAR 287
            P   T+     AC +L  L  GK +HG A   GF     + + ++ MY  C       R
Sbjct: 237 TPNYKTIGSGFQACVDLDALVEGKCLHGLALKNGFLCFEVVKSTILSMYSRCGSPEEAYR 296

Query: 288 IIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQS 347
             F +   KD++ W+SII  +S+ G +SE + LF  M+   I P+ + +  +L       
Sbjct: 297 -CFCKLDQKDLISWTSIIAVHSKFGLMSECLHLFWEMQASEIIPDEIVISCMLMGFGNSD 355

Query: 348 FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLIS 407
            +  G   H  I+K          NAL++MY K G + ++++IF+    +    W+T+I 
Sbjct: 356 RIFEGKAFHARILKQCCALSGITHNALLSMYCKFGHLGTANKIFHSF-HKSSEDWSTMIL 414

Query: 408 GYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLF-----NNVMK 462
           GY   G  E+ +    EM   G EPD  ++++++S+C+  G +    ++      N++++
Sbjct: 415 GYSNMGQKEKCISFLREMLLLGREPDLNSLVSVISSCSQVGAINIGRSIHCYAIKNSIIE 474

Query: 463 EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAE 522
              +A ++      +D+ GKSG +    ++     ++      ++L+S+ +  G L  A 
Sbjct: 475 NVSVANSL------MDMYGKSGHVTATWRIFHR-TLQRDVISWNTLISSYKQSGILAEAI 527

Query: 523 MLAHQLIEAE--PENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567
           +L  ++++ +  P       +LS  C+   +    E++ + ++  G 
Sbjct: 528 ILFDKMVKEKVYPNKVTCIIVLS-ACAHLASLDEGEKIHQYIKENGF 573


>gi|449445027|ref|XP_004140275.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 833

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 174/529 (32%), Positives = 297/529 (56%), Gaps = 4/529 (0%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           ++HC ++K G D+     N+L+  Y K    ++ +Q+F+E   ++ +SWNSIIN     G
Sbjct: 282 RIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKG 341

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
               +L  FR M   G    +  ++ I+ +  ++   + G++IH   +  G+ E  +F++
Sbjct: 342 RCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMGT-ETDIFIA 400

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
            +L+D+Y+K  H   A  +F  +  RN VSW AMI+    ++     I     MQ  G  
Sbjct: 401 NSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGEC 460

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
           P  VT T VL ACA L  L  GK IH      G   D  +S +L+ MY +C   LH AR 
Sbjct: 461 PNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCG-CLHSARN 519

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
           +F  ++ KD V ++ +I GYS++ D  +++ LFS MRL   +P+ V+ + ++S+C   + 
Sbjct: 520 VFNTSR-KDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAA 578

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
           L  G  VH   ++  L   + + N+L++ Y+KCG I  + ++FN++  +D  SW T+I G
Sbjct: 579 LKQGKEVHGVALRNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILG 638

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468
           YG  G  E A+ +F  M++  V+ D ++ +A+LSAC+H GLV+     F+ ++ ++    
Sbjct: 639 YGMIGELETAISMFEAMRDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSEMLAQRLEPT 698

Query: 469 AIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
            + HY C VDLLG++G +E+A K++  +P+ P   I  +L+ ACRI+G +E+    A  L
Sbjct: 699 EM-HYTCMVDLLGRAGFVEEAAKLIQQLPIAPDANIWGALLGACRIYGNVELGRRAAEHL 757

Query: 529 IEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            E +P++   Y LLS + +E+G W  A ++  +M+++G  K+ G S ++
Sbjct: 758 FELKPQHCGYYILLSNIYAETGRWDEANKIRELMKSRGAKKNPGCSWVQ 806



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 152/537 (28%), Positives = 271/537 (50%), Gaps = 20/537 (3%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G+  +    P V+K C+ +      G+++H    K G D D  + N+L+ +Y        
Sbjct: 154 GVQLDDHTFPFVLKLCSDSFDICK-GMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLND 212

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI--ISLC 139
           A +LFDEMP RD +SWN+II   + NG Y  +   +  M L   V+K  L++ I  + + 
Sbjct: 213 ARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRS-VIKPNLVSVISLLPIS 271

Query: 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSW 199
           + + + E+ R+IH   +  G  +  V    AL+D Y KC       +VF + V +NEVSW
Sbjct: 272 AALEDEEMTRRIHCYSVKVG-LDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSW 330

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
            ++I+G          ++ FR M   G +P  VT++ +L    EL   + GK IHG++  
Sbjct: 331 NSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMR 390

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
            G + D  ++ +L+ MY +   +   A  IF     +++V W+++I  Y+ +    EA++
Sbjct: 391 MGTETDIFIANSLIDMYAKSGHSTE-ASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIR 449

Query: 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
              +M+     PN+VT   +L +C R  FL  G  +H   ++ GL  D+ + N+L++MY+
Sbjct: 450 FVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYA 509

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           KCG + S+  +FN  + +D VS+  LI GY       ++L LF EM+  G +PD ++ + 
Sbjct: 510 KCGCLHSARNVFN-TSRKDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVG 568

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIA-LAIEHYACYVDLLGKSGKIEDACKVVSTMPM 498
           ++SAC +   +K+ + +    ++    + L + +    +D   K G+I+ AC++ + +  
Sbjct: 569 VISACANLAALKQGKEVHGVALRNHLYSHLFVSN--SLLDFYTKCGRIDIACRLFNQILF 626

Query: 499 KPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV-----CSESG 550
           K      ++++    + G LE     A  + EA  ++   Y L+S +     CS  G
Sbjct: 627 KDVAS-WNTMILGYGMIGELET----AISMFEAMRDDTVQYDLVSYIAVLSACSHGG 678



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 122/414 (29%), Positives = 195/414 (47%), Gaps = 9/414 (2%)

Query: 49  QLHCTALKSGSDADPV-ISNSLISMYAKFSKPESAYQLFDE--MPYRDTISWNSIINC-- 103
           Q+H   + +G     V +  SLI  YAKF  P S   LF++     R    WN++I    
Sbjct: 75  QVHALGILNGFLPRSVSLCASLILNYAKFQHPGSFCSLFNQTFQNCRTAFLWNTLIRAHS 134

Query: 104 FTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFEL 163
              NG +    E +  M   G  L       ++ LCS   ++  G ++H +V   G F+ 
Sbjct: 135 IAWNGTF-DGFETYNRMVRRGVQLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLG-FDT 192

Query: 164 SVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGID-LFRAM 222
            V+V   LL LY  C     A R+F++M  R+ VSW  +I     + +Y    +  F  +
Sbjct: 193 DVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMI 252

Query: 223 QREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEA 282
            R  +KP  V++  +L   A L D    + IH Y+   G D       AL+  Y +C  +
Sbjct: 253 LRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCG-S 311

Query: 283 LHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSS 342
           +     +F  T  K+ V W+SII G +  G   +A+  F  M     +PNSVT+ +IL  
Sbjct: 312 VKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPV 371

Query: 343 CTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSW 402
                    G  +H + M+ G   D+ I N+L++MY+K G  T +  IF+ +  R+ VSW
Sbjct: 372 LVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSW 431

Query: 403 TTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETL 456
             +I+ Y  +    EA++  ++MQE+G  P+A+T   +L AC   G +   + +
Sbjct: 432 NAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEI 485



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 130/488 (26%), Positives = 230/488 (47%), Gaps = 66/488 (13%)

Query: 27  TAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLF 86
           ++ILP +++   +       G ++H  +++ G++ D  I+NSLI MYAK      A  +F
Sbjct: 366 SSILPVLVELECFKA-----GKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIF 420

Query: 87  DEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELE 146
             +  R+ +SWN++I  +  N   + ++    +M   G    A     ++  C+++G L 
Sbjct: 421 HNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLG 480

Query: 147 LGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGC 206
            G++IHA+ +  G     +FVS +L+D+Y+KC     A  VF     ++EVS+  +I G 
Sbjct: 481 PGKEIHAMGVRIG-LTSDLFVSNSLIDMYAKCGCLHSARNVFNTSR-KDEVSYNILIIGY 538

Query: 207 IDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDH 266
            ++ +    ++LF  M+  G KP  V+   V+ ACA L  L+ GK +HG A         
Sbjct: 539 SETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYSHL 598

Query: 267 HLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRL 326
            +S +L+  Y +C       R +F +   KDV  W+++I GY   G+L  A+ +F  MR 
Sbjct: 599 FVSNSLLDFYTKCGRIDIACR-LFNQILFKDVASWNTMILGYGMIGELETAISMFEAMRD 657

Query: 327 ERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITS 386
           + ++ + V+ +A+LS+C      SHG                             G +  
Sbjct: 658 DTVQYDLVSYIAVLSAC------SHG-----------------------------GLVER 682

Query: 387 SHQIFNEMAARDF----VSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILS 442
             Q F+EM A+      + +T ++   G  G+ EEA +L   +Q+  + PDA    A+L 
Sbjct: 683 GWQYFSEMLAQRLEPTEMHYTCMVDLLGRAGFVEEAAKL---IQQLPIAPDANIWGALLG 739

Query: 443 ACNHAGLV----KEAETLFNNVMKEKKIALAIEHYACYV---DLLGKSGKIEDACKVVST 495
           AC   G V    + AE LF          L  +H   Y+   ++  ++G+ ++A K+   
Sbjct: 740 ACRIYGNVELGRRAAEHLFE---------LKPQHCGYYILLSNIYAETGRWDEANKIREL 790

Query: 496 MPMKPSTR 503
           M  + + +
Sbjct: 791 MKSRGAKK 798



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 120/426 (28%), Positives = 202/426 (47%), Gaps = 18/426 (4%)

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV-- 192
           +++LCS++  L   +Q+HAL I++G    SV +  +L+  Y+K  H      +F Q    
Sbjct: 60  LLTLCSKVQSLLQTKQVHALGILNGFLPRSVSLCASLILNYAKFQHPGSFCSLFNQTFQN 119

Query: 193 IRNEVSWTAMISGCIDSQN--YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNG 250
            R    W  +I     + N  +D G + +  M R GV+    T   VL  C++  D+  G
Sbjct: 120 CRTAFLWNTLIRAHSIAWNGTFD-GFETYNRMVRRGVQLDDHTFPFVLKLCSDSFDICKG 178

Query: 251 KAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQ 310
             +HG  +  GFD D ++   L+ +Y  C   L+ AR +F+    +DVV W++II   S 
Sbjct: 179 MEVHGVVFKLGFDTDVYVGNTLLMLYGNCG-FLNDARRLFDEMPERDVVSWNTIIGLLSV 237

Query: 311 SGDLSEAMKLFSRMRLER-IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
           +GD +EA   +  M L   I+PN V+++++L              +HCY +K GL+  V+
Sbjct: 238 NGDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQVT 297

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
             NAL++ Y KCGS+ +  Q+FNE   ++ VSW ++I+G    G   +AL  F  M ++G
Sbjct: 298 TCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAG 357

Query: 430 VEPDAITVLAILSA-----CNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSG 484
            +P+++T+ +IL       C  AG  KE       +  E  I +A       +D+  KSG
Sbjct: 358 AQPNSVTISSILPVLVELECFKAG--KEIHGFSMRMGTETDIFIA----NSLIDMYAKSG 411

Query: 485 KIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSM 544
              +A  +   +  +      + + +       LE    +       E  NA  +T +  
Sbjct: 412 HSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLP 471

Query: 545 VCSESG 550
            C+  G
Sbjct: 472 ACARLG 477


>gi|242051244|ref|XP_002463366.1| hypothetical protein SORBIDRAFT_02g042450 [Sorghum bicolor]
 gi|241926743|gb|EER99887.1| hypothetical protein SORBIDRAFT_02g042450 [Sorghum bicolor]
          Length = 745

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 187/563 (33%), Positives = 303/563 (53%), Gaps = 16/563 (2%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           +G     A+  +V  + A  +   H   QLH  A ++G   D  + N+L++ Y++    +
Sbjct: 141 TGDVRPDAVTFTVTLSLAAGRGEAHLVRQLHALASRAGIATDVFVGNALVTAYSRGGLMD 200

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNG-FYVRSLEMFREMYLCGFVLKAEL-LAGIISL 138
           +A ++F+EMP RD +SWN+++    Q+G      + +F  M   G V    + +  +I  
Sbjct: 201 AARKVFEEMPARDLVSWNALVCGLAQDGECSAEVIRVFLRMLKQGDVRPDRISVCSVIPA 260

Query: 139 CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
           C   G+LELGRQIH   +  G  E  V ++  L+ +Y KC     A R+FE M  R+ +S
Sbjct: 261 CGAEGKLELGRQIHGFAVKLG-VEGHVSIANVLVAMYYKCGTPGCARRLFEFMGERDVIS 319

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258
           WT ++S  +D ++    + LF  M+R+GV P  VT   +L +       R G+ IH  A 
Sbjct: 320 WTTVMS--MDGED---AVSLFNGMRRDGVAPNEVTFVAMLSSMPGDCPAREGQMIH--AV 372

Query: 259 CCGFDFDHHLSAA--LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
           C         +AA  L+ MY +    +  AR+IF      +++ W+++I GY+Q+    +
Sbjct: 373 CLKTSLSDKAAAANSLITMYAKLRR-MDDARMIFSLMPHSEIIAWNALISGYAQNEMCQD 431

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG--VHCYIMKAGLNFDVSIGNAL 374
           A++ F  M ++ ++PN  T  +ILS+ T    +S   G   HC  +K GL     +  AL
Sbjct: 432 ALEAFLAM-MKIMKPNETTFASILSAVTAVETVSMAYGQMYHCQALKLGLGASEYVSGAL 490

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           ++MY+K GS+  S + F E   R  ++WT +IS    HG  +  + LF +M  SGV PD 
Sbjct: 491 IDMYAKRGSLEESWKAFGETVHRSLIAWTAIISANSKHGNYDAVVSLFNDMVGSGVAPDG 550

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS 494
           + +L++L+AC ++G V     +F+++  +    L  EHYAC VD+LG++G++E+A +++ 
Sbjct: 551 VVLLSVLTACRYSGFVSLGREIFDSMAAKHGAELWPEHYACVVDMLGRAGRLEEAEELML 610

Query: 495 TMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLG 554
            MP  PS   L SL+ ACRIHG  +V E +A  L E EP  +  Y LLS + +E G+W  
Sbjct: 611 QMPSGPSVSALQSLLGACRIHGNTDVGERVASVLTETEPTESGAYVLLSNIYAEKGDWGA 670

Query: 555 AEEVWRVMRAKGLSKSYGFSRIE 577
              V R MR +G+ K  GFS ++
Sbjct: 671 VARVRRQMRERGVKKEVGFSWVD 693



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 156/550 (28%), Positives = 260/550 (47%), Gaps = 22/550 (4%)

Query: 23  LYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESA 82
           L +   + P+   A A A++        H  A+ SG  A   ++NSL + YAK +   +A
Sbjct: 45  LQAGLPLSPTAFSA-AVARSGPDALPAFHALAVASGLAAFAPVTNSLAARYAKGNSFPAA 103

Query: 83  YQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK-AELLAGIISLCSQ 141
            ++F     RDT S+N+I++          +L     M   G V   A      +SL + 
Sbjct: 104 ARVFAAARSRDTRSYNTILSATPDPD---DALAFAARMLRTGDVRPDAVTFTVTLSLAAG 160

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
            GE  L RQ+HAL    G     VFV  AL+  YS+      A +VFE+M  R+ VSW A
Sbjct: 161 RGEAHLVRQLHALASRAG-IATDVFVGNALVTAYSRGGLMDAARKVFEEMPARDLVSWNA 219

Query: 202 MISGCI-DSQNYDTGIDLFRAMQREG-VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
           ++ G   D +     I +F  M ++G V+P R+++  V+ AC     L  G+ IHG+A  
Sbjct: 220 LVCGLAQDGECSAEVIRVFLRMLKQGDVRPDRISVCSVIPACGAEGKLELGRQIHGFAVK 279

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
            G +    ++  L+ MY +C      AR +FE    +DV+ W++++     S D  +A+ 
Sbjct: 280 LGVEGHVSIANVLVAMYYKCGTP-GCARRLFEFMGERDVISWTTVM-----SMDGEDAVS 333

Query: 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           LF+ MR + + PN VT +A+LSS         G  +H   +K  L+   +  N+L+ MY+
Sbjct: 334 LFNGMRRDGVAPNEVTFVAMLSSMPGDCPAREGQMIHAVCLKTSLSDKAAAANSLITMYA 393

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           K   +  +  IF+ M   + ++W  LISGY  +   ++AL+ FL M +  ++P+  T  +
Sbjct: 394 KLRRMDDARMIFSLMPHSEIIAWNALISGYAQNEMCQDALEAFLAMMKI-MKPNETTFAS 452

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDACKVVSTMP 497
           ILSA      V  A     +  +  K+ L    Y     +D+  K G +E++ K      
Sbjct: 453 ILSAVTAVETVSMAYGQMYHC-QALKLGLGASEYVSGALIDMYAKRGSLEESWKAFGETV 511

Query: 498 MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLSMVCSESGNWLGA 555
            + S    ++++SA   HG  +    L + ++ +   P+     ++L+  C  SG     
Sbjct: 512 HR-SLIAWTAIISANSKHGNYDAVVSLFNDMVGSGVAPDGVVLLSVLT-ACRYSGFVSLG 569

Query: 556 EEVWRVMRAK 565
            E++  M AK
Sbjct: 570 REIFDSMAAK 579


>gi|413920851|gb|AFW60783.1| hypothetical protein ZEAMMB73_487264 [Zea mays]
          Length = 770

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 173/530 (32%), Positives = 288/530 (54%), Gaps = 14/530 (2%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           LH   +K+G+ AD  ++ SL++ Y +    + A  LFD+MP ++ ++W ++I  +T N  
Sbjct: 100 LHGHMVKTGTSADMFVATSLVNAYMRCGASQDARSLFDQMPEKNVVTWTALITGYTVNSQ 159

Query: 110 YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVST 169
            + +LE+F EM   G       L  +++ CS     +LG Q+H   I   +  ++  +  
Sbjct: 160 LLEALEVFVEMLEAGRYPSHYTLGAMLNACSASNNADLGSQVHGYTIKYRALSITS-IGN 218

Query: 170 ALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNY-DTGIDLFRAMQREGVK 228
           +L  +Y+K      A+R F  +  +N ++WT MIS C + +NY + G+ LF  M  +GV 
Sbjct: 219 SLCRMYAKSGSLESAMRAFRMVPDKNVITWTTMISACAEDENYTELGLTLFLDMLMDGVL 278

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
           P   TLT V+  C    DL  GK +  + +  G   +  +  + M++Y    E     R 
Sbjct: 279 PNEFTLTSVMSLCGTRLDLNLGKQVQAFCFKIGCQTNIPVKNSTMYLYLRKGETDEAMRF 338

Query: 289 IFERTKVKDVVIWSSIIRGYSQ-----SGDLS------EAMKLFSRMRLERIEPNSVTLL 337
            FE      ++ W+++I GY+Q       DL       +A+K+F  ++   ++P+  T  
Sbjct: 339 -FEEMDDVSIITWNAMISGYAQIMETAKDDLHARSRGFQALKVFRNLKRSAMKPDLFTFS 397

Query: 338 AILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR 397
           +ILS C+    L  G  +H   +K G   DV + +AL+NMY+KCG I  + + F EM+ R
Sbjct: 398 SILSVCSSMMALEQGEQIHAQTIKTGFLSDVVVNSALVNMYNKCGCIEDATKAFVEMSIR 457

Query: 398 DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLF 457
             V+WT++ISGY  HG  +EA+QLF +M+ +GV P+ IT + +LSAC++AGL ++AE  F
Sbjct: 458 TLVTWTSMISGYSQHGRPQEAIQLFEDMRFAGVRPNEITFVCVLSACSYAGLAEKAEHYF 517

Query: 458 NNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGR 517
           + + +E KI   ++HY C VD+  + G+++DA   +     +P+  I SSLV+ CR HG 
Sbjct: 518 DMMKEEYKIEPIVDHYGCMVDMFVRLGRLDDAFAFIRRTGFEPNEAIWSSLVAGCRSHGN 577

Query: 518 LEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567
           +E+A   A +LIE  P+    Y LL  +   +  W     V ++M+ +GL
Sbjct: 578 MELAFYAADRLIELRPKGIETYVLLLNMYISNERWHDVARVRKLMKQEGL 627



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 115/433 (26%), Positives = 212/433 (48%), Gaps = 22/433 (5%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           E+  +G Y +   L +++ AC+ A  +   G Q+H   +K  + +   I NSL  MYAK 
Sbjct: 169 EMLEAGRYPSHYTLGAMLNACS-ASNNADLGSQVHGYTIKYRALSITSIGNSLCRMYAKS 227

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVR-SLEMFREMYLCGFVLKAELLAGI 135
              ESA + F  +P ++ I+W ++I+   ++  Y    L +F +M + G +     L  +
Sbjct: 228 GSLESAMRAFRMVPDKNVITWTTMISACAEDENYTELGLTLFLDMLMDGVLPNEFTLTSV 287

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           +SLC    +L LG+Q+ A     G  + ++ V  + + LY +      A+R FE+M   +
Sbjct: 288 MSLCGTRLDLNLGKQVQAFCFKIGC-QTNIPVKNSTMYLYLRKGETDEAMRFFEEMDDVS 346

Query: 196 EVSWTAMISG---CIDSQNYD--------TGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
            ++W AMISG    +++   D          + +FR ++R  +KP   T + +L  C+ +
Sbjct: 347 IITWNAMISGYAQIMETAKDDLHARSRGFQALKVFRNLKRSAMKPDLFTFSSILSVCSSM 406

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
             L  G+ IH      GF  D  +++AL++MY +C   +  A   F    ++ +V W+S+
Sbjct: 407 MALEQGEQIHAQTIKTGFLSDVVVNSALVNMYNKCG-CIEDATKAFVEMSIRTLVTWTSM 465

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
           I GYSQ G   EA++LF  MR   + PN +T + +LS+C+    L+     +  +MK   
Sbjct: 466 ISGYSQHGRPQEAIQLFEDMRFAGVRPNEITFVCVLSACSYAG-LAEKAEHYFDMMKEEY 524

Query: 365 NFDVSIGN--ALMNMYSKCGSITSSHQIFNEMA-ARDFVSWTTLISGYGFHGYGEEAL-- 419
             +  + +   +++M+ + G +  +           +   W++L++G   HG  E A   
Sbjct: 525 KIEPIVDHYGCMVDMFVRLGRLDDAFAFIRRTGFEPNEAIWSSLVAGCRSHGNMELAFYA 584

Query: 420 -QLFLEMQESGVE 431
               +E++  G+E
Sbjct: 585 ADRLIELRPKGIE 597



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 119/225 (52%), Gaps = 2/225 (0%)

Query: 221 AMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECT 280
           AM REG          +L  C E   L   +A+HG+    G   D  ++ +L++ Y  C 
Sbjct: 68  AMLREGKTVQSAMYVPLLHVCVETGSLGGARALHGHMVKTGTSADMFVATSLVNAYMRCG 127

Query: 281 EALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAIL 340
            A   AR +F++   K+VV W+++I GY+ +  L EA+++F  M      P+  TL A+L
Sbjct: 128 -ASQDARSLFDQMPEKNVVTWTALITGYTVNSQLLEALEVFVEMLEAGRYPSHYTLGAML 186

Query: 341 SSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFV 400
           ++C+  +    G  VH Y +K       SIGN+L  MY+K GS+ S+ + F  +  ++ +
Sbjct: 187 NACSASNNADLGSQVHGYTIKYRALSITSIGNSLCRMYAKSGSLESAMRAFRMVPDKNVI 246

Query: 401 SWTTLISGYG-FHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
           +WTT+IS       Y E  L LFL+M   GV P+  T+ +++S C
Sbjct: 247 TWTTMISACAEDENYTELGLTLFLDMLMDGVLPNEFTLTSVMSLC 291



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 104/201 (51%), Gaps = 8/201 (3%)

Query: 313 DLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN 372
           D+ EAM +      E     S   + +L  C     L     +H +++K G + D+ +  
Sbjct: 62  DVGEAMAMLR----EGKTVQSAMYVPLLHVCVETGSLGGARALHGHMVKTGTSADMFVAT 117

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
           +L+N Y +CG+   +  +F++M  ++ V+WT LI+GY  +    EAL++F+EM E+G  P
Sbjct: 118 SLVNAYMRCGASQDARSLFDQMPEKNVVTWTALITGYTVNSQLLEALEVFVEMLEAGRYP 177

Query: 433 DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL-AIEHYACYVDLLGKSGKIEDACK 491
              T+ A+L+AC+ +        +    +K + +++ +I +  C   +  KSG +E A +
Sbjct: 178 SHYTLGAMLNACSASNNADLGSQVHGYTIKYRALSITSIGNSLCR--MYAKSGSLESAMR 235

Query: 492 VVSTMPMKPSTRILSSLVSAC 512
               +P K +    ++++SAC
Sbjct: 236 AFRMVPDK-NVITWTTMISAC 255



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 107/232 (46%), Gaps = 5/232 (2%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           Q L +++  L  S +  +     S++  C+     +  G Q+H   +K+G  +D V++++
Sbjct: 376 QALKVFRN-LKRSAMKPDLFTFSSILSVCSSMMALEQ-GEQIHAQTIKTGFLSDVVVNSA 433

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           L++MY K    E A + F EM  R  ++W S+I+ ++Q+G    ++++F +M   G    
Sbjct: 434 LVNMYNKCGCIEDATKAFVEMSIRTLVTWTSMISGYSQHGRPQEAIQLFEDMRFAGVRPN 493

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
                 ++S CS  G  E       ++  +   E  V     ++D++ +      A    
Sbjct: 494 EITFVCVLSACSYAGLAEKAEHYFDMMKEEYKIEPIVDHYGCMVDMFVRLGRLDDAFAFI 553

Query: 189 EQMVIR-NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLL 239
            +     NE  W+++++GC    N +  +  + A +   ++P  +   ++LL
Sbjct: 554 RRTGFEPNEAIWSSLVAGCRSHGNME--LAFYAADRLIELRPKGIETYVLLL 603


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 170/491 (34%), Positives = 275/491 (56%), Gaps = 11/491 (2%)

Query: 96   SWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALV 155
            SWNS+I    + G  V +L  F  +   G +         I  CS + +L  GR  H   
Sbjct: 1109 SWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQA 1168

Query: 156  IVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTG 215
             V G FE  +FVS+AL+D+YSKC     A  +F+++ +RN VSWT+MI+G + ++  D  
Sbjct: 1169 FVFG-FETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNA 1227

Query: 216  IDLFRAMQRE--------GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
            + LF+    E         V    V +  VL AC+ +      + +HG+    GFD    
Sbjct: 1228 LLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIG 1287

Query: 268  LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM-RL 326
            +   LM  Y +C + L  ++ +F+  + KD + W+S+I  Y+QSG   EA+++F  M R 
Sbjct: 1288 VGNTLMDAYAKCGQPL-VSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRH 1346

Query: 327  ERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITS 386
              +  N+VTL A+L +C     L  G  +H  ++K  L ++V +G ++++MY KCG +  
Sbjct: 1347 VGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEM 1406

Query: 387  SHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH 446
            + + F+ M  ++  SWT +++GYG HG  +EAL +F +M  +GV+P+ IT +++L+AC+H
Sbjct: 1407 AKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSH 1466

Query: 447  AGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILS 506
            AGLV+E    FN +  +  I   IEHY C VDL G++G + +A  ++  M MKP   +  
Sbjct: 1467 AGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWG 1526

Query: 507  SLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566
            SL+ ACRIH  +++ E+ A +L E +P+N   Y LLS + +++G W   E +  +M+ + 
Sbjct: 1527 SLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQ 1586

Query: 567  LSKSYGFSRIE 577
            L K  GFS +E
Sbjct: 1587 LVKPPGFSLVE 1597



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 115/373 (30%), Positives = 181/373 (48%), Gaps = 31/373 (8%)

Query: 149 RQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCID 208
           RQIHA +I  G       ++  L+ LYS       A+ +F Q+      +W  +I     
Sbjct: 44  RQIHAKIIRSG-LSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTI 102

Query: 209 SQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHL 268
           +   +  + L++ M  +G+   + T   V+ AC     +  GK +HG     GF  D  +
Sbjct: 103 NGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFV 162

Query: 269 SAALMHMYCECTEA------------------------------LHPARIIFERTKVKDV 298
              L+  Y +C                                 L  AR IF+    K+V
Sbjct: 163 QNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNV 222

Query: 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCY 358
           V W+++I GY ++    EA++LF RM+ E I PN  T+++++ +CT    L+ G G+H Y
Sbjct: 223 VSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDY 282

Query: 359 IMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEA 418
            +K  +   V +G AL++MYSKCGSI  + ++F  M  +   +W ++I+  G HG G+EA
Sbjct: 283 AIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEA 342

Query: 419 LQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVD 478
           L LF EM+   V+PDAIT + +L AC H   VKE    F  + +   IA   EHY C  +
Sbjct: 343 LNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTE 402

Query: 479 LLGKSGKIEDACK 491
           L  +S  +++A K
Sbjct: 403 LYARSNNLDEAFK 415



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 123/439 (28%), Positives = 219/439 (49%), Gaps = 30/439 (6%)

Query: 22   GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
            GL    +  P  IK+C+ A      G   H  A   G + D  +S++LI MY+K  + + 
Sbjct: 1137 GLIPTRSSFPCTIKSCS-ALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKD 1195

Query: 82   AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL--------CGFVLKAELLA 133
            A  LFDE+P R+ +SW S+I  + QN     +L +F++               L + ++ 
Sbjct: 1196 ARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMV 1255

Query: 134  GIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI 193
             ++S CS++    +   +H  V+  G F+ S+ V   L+D Y+KC   L++ +VF+ M  
Sbjct: 1256 SVLSACSRVSGKGITEGVHGFVVKKG-FDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEE 1314

Query: 194  RNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE-GVKPTRVTLTIVLLACAELRDLRNGKA 252
            ++++SW +MI+    S      +++F  M R  GV+   VTL+ VLLACA    LR GK 
Sbjct: 1315 KDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKC 1374

Query: 253  IHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSG 312
            IH        +++  +  +++ MYC+C   +  A+  F+R K K+V  W++++ GY   G
Sbjct: 1375 IHDQVIKMDLEYNVCVGTSIIDMYCKCGR-VEMAKKTFDRMKEKNVKSWTAMVAGYGMHG 1433

Query: 313  DLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCY-IMKAGLNFDVSIG 371
               EA+ +F +M    ++PN +T +++L++C+    +  G   H +  MK    +D+  G
Sbjct: 1434 RAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGW--HWFNAMKH--KYDIEPG 1489

Query: 372  ----NALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFH---GYGEEALQLFL 423
                  +++++ + G +  ++ +   M  + DFV W +L+     H     GE A Q   
Sbjct: 1490 IEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLF 1549

Query: 424  EMQESGVEPDAITVLAILS 442
            E+     +PD      +LS
Sbjct: 1550 EL-----DPDNCGYYVLLS 1563



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/392 (29%), Positives = 210/392 (53%), Gaps = 25/392 (6%)

Query: 188  FEQMVIRNEV-SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
            F + V ++ V SW ++I+      +    +  F ++++ G+ PTR +    + +C+ L D
Sbjct: 1098 FYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCD 1157

Query: 247  LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
            L +G+  H  A+  GF+ D  +S+AL+ MY +C + L  AR +F+   +++VV W+S+I 
Sbjct: 1158 LVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQ-LKDARALFDEIPLRNVVSWTSMIT 1216

Query: 307  GYSQSGDLSEAMKLFSRMRLERIE-------P-NSVTLLAILSSCTRQSFLSHGLGVHCY 358
            GY Q+     A+ LF     E  E       P +SV ++++LS+C+R S      GVH +
Sbjct: 1217 GYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGF 1276

Query: 359  IMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEA 418
            ++K G +  + +GN LM+ Y+KCG    S ++F+ M  +D +SW ++I+ Y   G   EA
Sbjct: 1277 VVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEA 1336

Query: 419  LQLFLEM-QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACY- 476
            L++F  M +  GV  +A+T+ A+L AC HAG ++  + + + V+K     + +E+  C  
Sbjct: 1337 LEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIK-----MDLEYNVCVG 1391

Query: 477  ---VDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE- 532
               +D+  K G++E A K    M  K + +  +++V+   +HGR + A  + ++++ A  
Sbjct: 1392 TSIIDMYCKCGRVEMAKKTFDRMKEK-NVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGV 1450

Query: 533  PENAANYTLLSMVCSESGNWLGAEEVWRVMRA 564
              N   +  +   CS +G     EE W    A
Sbjct: 1451 KPNYITFVSVLAACSHAGL---VEEGWHWFNA 1479



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 98/335 (29%), Positives = 158/335 (47%), Gaps = 33/335 (9%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           Q+H   ++SG   D +++  LI +Y+   +   A  LF ++    T +WN II   T NG
Sbjct: 45  QIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTING 104

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
              ++L +++ M   G          +I  C+    ++LG+ +H  +I  G F   VFV 
Sbjct: 105 LSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYG-FSGDVFVQ 163

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWT---------------------------- 200
             L+D Y KC H   AL+VFE+M +RN VSWT                            
Sbjct: 164 NNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVV 223

Query: 201 ---AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
              AMI+G I +Q  +  ++LF+ MQ E + P   T+  ++ AC E+  L  G+ IH YA
Sbjct: 224 SWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYA 283

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
                +   +L  AL+ MY +C  ++  A  +FE    K +  W+S+I      G   EA
Sbjct: 284 IKNCIEIGVYLGTALIDMYSKCG-SIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEA 342

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHG 352
           + LFS M    ++P+++T + +L +C     +  G
Sbjct: 343 LNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEG 377



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 159/328 (48%), Gaps = 24/328 (7%)

Query: 26   NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
            ++ ++ SV+ AC+   + +     +H   +K G D    + N+L+  YAK  +P  + ++
Sbjct: 1250 DSVVMVSVLSACSRV-SGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKV 1308

Query: 86   FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL-CGFVLKAELLAGIISLCSQIGE 144
            FD M  +D ISWNS+I  + Q+G    +LE+F  M    G    A  L+ ++  C+  G 
Sbjct: 1309 FDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGA 1368

Query: 145  LELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMIS 204
            L  G+ IH  VI     E +V V T+++D+Y KC    +A + F++M  +N  SWTAM++
Sbjct: 1369 LRAGKCIHDQVI-KMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVA 1427

Query: 205  GCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDF 264
            G          +D+F  M R GVKP  +T   VL AC+       G    G+ +      
Sbjct: 1428 GYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHA-----GLVEEGWHWFNAMKH 1482

Query: 265  DHHLSAALMHMYCEC-----TEALHPARIIFERTKVK-DVVIWSSIIRG--YSQSGDLSE 316
             + +   + H  C          L+ A  + +R K+K D V+W S++      ++ DL E
Sbjct: 1483 KYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGE 1542

Query: 317  --AMKLFSRMRLERIEPNSVTLLAILSS 342
              A KLF       ++P++     +LS+
Sbjct: 1543 IAAQKLF------ELDPDNCGYYVLLSN 1564



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 131/276 (47%), Gaps = 34/276 (12%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           EQ L LYK  +   G+ ++    P VIKAC    +    G  +H + +K G   D  + N
Sbjct: 107 EQALMLYKNMVC-QGIAADKFTFPFVIKACTNFLSID-LGKVVHGSLIKYGFSGDVFVQN 164

Query: 68  SLISMYAK----------FSKP---------------------ESAYQLFDEMPYRDTIS 96
           +LI  Y K          F K                      + A ++FDE+P ++ +S
Sbjct: 165 NLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVS 224

Query: 97  WNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVI 156
           W ++IN + +N     +LE+F+ M           +  +I  C+++G L LGR IH   I
Sbjct: 225 WTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAI 284

Query: 157 VDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGI 216
            +   E+ V++ TAL+D+YSKC     A+ VFE M  ++  +W +MI+           +
Sbjct: 285 KN-CIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEAL 343

Query: 217 DLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKA 252
           +LF  M+R  VKP  +T   VL AC  +++++ G A
Sbjct: 344 NLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCA 379



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 147/313 (46%), Gaps = 41/313 (13%)

Query: 237 VLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK 296
           +L  C   + LR    IH      G   D  L+  L+H+Y       + A ++F + +  
Sbjct: 33  LLQNCKNFKHLRQ---IHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAY-AILLFYQIQNP 88

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG-- 354
               W+ IIR  + +G   +A+ L+  M  + I  +  T   ++ +CT  +FLS  LG  
Sbjct: 89  CTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACT--NFLSIDLGKV 146

Query: 355 VHCYIMKAGLNFDVSIGNALMNMYSKCG-------------------------------S 383
           VH  ++K G + DV + N L++ Y KCG                                
Sbjct: 147 VHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGD 206

Query: 384 ITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
           +  + +IF+E+ +++ VSWT +I+GY  +   EEAL+LF  MQ   + P+  T+++++ A
Sbjct: 207 LQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKA 266

Query: 444 CNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTR 503
           C   G++     + +  +K   I + +      +D+  K G I+DA +V  TMP K S  
Sbjct: 267 CTEMGILTLGRGIHDYAIKN-CIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRK-SLP 324

Query: 504 ILSSLVSACRIHG 516
             +S++++  +HG
Sbjct: 325 TWNSMITSLGVHG 337


>gi|147790104|emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]
          Length = 825

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 189/557 (33%), Positives = 312/557 (56%), Gaps = 16/557 (2%)

Query: 29  ILPSVIKACAYAQTHQHFGLQLHCTALKSGSD--ADPVISNSLISMYAKFSKPESAYQLF 86
           + P+V +   Y   +  +GL      +K GSD   D  + +S I MYA+    + A ++F
Sbjct: 224 VFPAVWRMNDYDNANVLYGL-----VVKLGSDYVDDFFVVSSAIFMYAELGCVDFAREIF 278

Query: 87  DEMPYRDTISWNSIINCFTQNGFYVRSLEMFRE-MYLCGFVLKAELLAGIISLCSQIGEL 145
           D    R+T  WN++I  + QN   + ++++F + M    F L        ++  SQ+  L
Sbjct: 279 DCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWL 338

Query: 146 ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISG 205
           +LGRQ+HA ++   +  L V +  A++ +YS+C     + +VF  M+ R+ V+W  M+S 
Sbjct: 339 DLGRQLHAYILKSSTI-LQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSA 397

Query: 206 CIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFD 265
            + +   D G+ L   MQ++G     VTLT +L   + LR    GK  H Y    G  F+
Sbjct: 398 FVQNGLDDEGLMLVFEMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFE 457

Query: 266 HHLSAALMHMYCECTEALHPARIIFERTKV--KDVVIWSSIIRGYSQSGDLSEAMKLFSR 323
             +   L+ MY + +  +  A+ +FE+     +D   W+++I GY+Q+G   E   +F +
Sbjct: 458 G-MDGYLIDMYAK-SGLITTAQQLFEKNSXYDRDEATWNAMIAGYTQNGLSEEGFAVFRK 515

Query: 324 MRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS 383
           M  + + PN+VTL +IL +C     +  G  +H + ++  LN +V +G AL++MYSK G+
Sbjct: 516 MIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLNQNVFVGTALLDMYSKSGA 575

Query: 384 ITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
           IT +  +F E   ++ V++TT+I  YG HG GE AL LF  M  SG++PD++T +AILSA
Sbjct: 576 ITYAENVFAETLEKNSVTYTTMILSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSA 635

Query: 444 CNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPST- 502
           C++AGLV E   +F ++ +E KI  + EHY C  D+LG+ G++ +A + V  +  + +T 
Sbjct: 636 CSYAGLVDEGLRIFQSMEREYKIQPSSEHYCCVADMLGRVGRVXEAYEFVKGLGEEGNTF 695

Query: 503 RILSSLVSACRIHGRLEVAEMLAHQLIEAEPEN--AANYTLLSMVCSESGNWLGAEEVWR 560
           RI  SL+ ACRIHG  E+ +++A++L+E E  +     + LLS + +  GNW   + V +
Sbjct: 696 RIWGSLLGACRIHGEFELGKVVANKLLEMEKGSXLTGYHVLLSNIYAAEGNWDNVDRVRK 755

Query: 561 VMRAKGLSKSYGFSRIE 577
            MR KGL K  G S +E
Sbjct: 756 EMRQKGLMKEAGCSWVE 772



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 121/394 (30%), Positives = 200/394 (50%), Gaps = 23/394 (5%)

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC-GFV 126
           S +S   +   P  A  LFD +P   T+ WN+II  F  N   + +L  +  M       
Sbjct: 42  SRLSHLCRQGHPHQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPK 101

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKC-------- 178
             +   +  +  C+Q   L+LG+ +H  V+    F  S  V  +LL++YS C        
Sbjct: 102 FDSYTFSSTLKACAQARSLKLGKALHCHVL-RSHFGSSRIVYNSLLNMYSTCLTEVPYLG 160

Query: 179 -----HHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVT 233
                ++  +  RVF+ M  RN V+W  MIS  + ++       +FR M R G++PT V+
Sbjct: 161 TAYDFNNCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVS 220

Query: 234 LTIVLLACAELRDLRNGKAIHGYAYCCGFDF--DHHLSAALMHMYCE--CTEALHPARII 289
              V  A   + D  N   ++G     G D+  D  + ++ + MY E  C +    AR I
Sbjct: 221 FVNVFPAVWRMNDYDNANVLYGLVVKLGSDYVDDFFVVSSAIFMYAELGCVDF---AREI 277

Query: 290 FERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSR-MRLERIEPNSVTLLAILSSCTRQSF 348
           F+    ++  +W+++I GY Q+    EA+ LF + M  E+   + VT L+ L++ ++  +
Sbjct: 278 FDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQW 337

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
           L  G  +H YI+K+     V I NA++ MYS+CGSI +S ++F+ M  RD V+W T++S 
Sbjct: 338 LDLGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSA 397

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILS 442
           +  +G  +E L L  EMQ+ G   D++T+ A+LS
Sbjct: 398 FVQNGLDDEGLMLVFEMQKQGFMVDSVTLTALLS 431



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 140/541 (25%), Positives = 258/541 (47%), Gaps = 31/541 (5%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYA-------------KFSK 78
           S +KACA A++ +  G  LHC  L+S   +  ++ NSL++MY+              F+ 
Sbjct: 109 STLKACAQARSLK-LGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNN 167

Query: 79  PESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISL 138
            +   ++FD M  R+ ++WN++I+ + +    + + +MFR M   G          +   
Sbjct: 168 CDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPA 227

Query: 139 CSQIGELELGRQIHALVIVDGS-FELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197
             ++ + +    ++ LV+  GS +    FV ++ + +Y++      A  +F+  + RN  
Sbjct: 228 VWRMNDYDNANVLYGLVVKLGSDYVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTE 287

Query: 198 SWTAMISGCIDSQNYDTGIDLF-RAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
            W  MI G + +      IDLF + M+ E      VT    L A ++L+ L  G+ +H Y
Sbjct: 288 VWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGRQLHAY 347

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
                      +  A++ MY  C  ++  +  +F     +DVV W++++  + Q+G   E
Sbjct: 348 ILKSSTILQVVILNAIIVMYSRCG-SIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDE 406

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
            + L   M+ +    +SVTL A+LS  +       G   H Y+++ G+ F+  +   L++
Sbjct: 407 GLMLVFEMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFE-GMDGYLID 465

Query: 377 MYSKCGSITSSHQIF--NEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           MY+K G IT++ Q+F  N    RD  +W  +I+GY  +G  EE   +F +M E  V P+A
Sbjct: 466 MYAKSGLITTAQQLFEKNSXYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNA 525

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLLGKSGKIEDACK 491
           +T+ +IL ACN  G +   + +    ++    + + +        +D+  KSG I  A  
Sbjct: 526 VTLASILPACNPMGTIGLGKQIHGFAIRCFLNQNVFVG----TALLDMYSKSGAITYAEN 581

Query: 492 VVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLSMVCSES 549
           V +    K S    + ++S  + HG  E A  L H ++ +  +P++     +LS  CS +
Sbjct: 582 VFAETLEKNSVTYTTMILSYGQ-HGMGERALSLFHAMLGSGIKPDSVTFVAILS-ACSYA 639

Query: 550 G 550
           G
Sbjct: 640 G 640


>gi|449443185|ref|XP_004139361.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240-like [Cucumis sativus]
 gi|449525900|ref|XP_004169954.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240-like [Cucumis sativus]
          Length = 562

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 173/506 (34%), Positives = 292/506 (57%), Gaps = 10/506 (1%)

Query: 80  ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLC 139
           E A  +FD++  R    WNS+I  +   G    +L M+ EM   GF         ++ +C
Sbjct: 56  EYARTVFDQINQRTVYIWNSMIKGYCNGGDKFGALFMYEEMQRKGFSPDHFTFPFVLKVC 115

Query: 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSW 199
           S I  L  G+ +H  ++  G FEL V+ S+ LL++Y  C      L+VFE +   N V+W
Sbjct: 116 SIIDLLVYGQSVHNRIVKTG-FELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVVAW 174

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
           T++I+G +++      + LF+ M+ EGV+P  +T+T  L A A  RD+  GK +H     
Sbjct: 175 TSLIAGFVNNDQPKEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTGKLVHDRLRQ 234

Query: 260 CGFD-------FDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSG 312
            GFD       F+  L+ A+M MY +C + L  AR +F++   +++V+W+S+I  YSQ G
Sbjct: 235 LGFDPFDTNSCFNVILATAIMDMYAKCGK-LVTARNLFDKMPQRNLVVWNSMISAYSQYG 293

Query: 313 DLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN 372
             +EA++LF  M +    PN  T L+++S+CT   F S G  +H   ++A  +  V+IG 
Sbjct: 294 RGAEALRLFVDMEMAGFVPNKATFLSVISACTHMGFRSTGRSLHARALRASFHEFVAIGT 353

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG-VE 431
           ALM+MY+K G   ++ +IF+++  +D ++WTT+ISG    G G+EAL +F  M+E   V 
Sbjct: 354 ALMDMYAKAGDADTALKIFSKLRKKDVMAWTTMISGLAIQGKGKEALNVFRRMEEEAEVA 413

Query: 432 PDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACK 491
           PD IT +A+L AC+H GLV+E +  F ++ +   I   +EHY C +DLL ++G  ++A +
Sbjct: 414 PDQITYIAVLWACSHLGLVEEGQKQFTSMTEVYGIEPTMEHYGCMIDLLSRAGHSKEAEE 473

Query: 492 VVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGN 551
           ++  MP +P+  ILSS+++ C ++G + +A  +   ++E E  ++  Y LLS + +++ N
Sbjct: 474 LLMKMPTQPNATILSSILNGCEMYGNVGLANRVKSHIVELENSSSGVYVLLSNIHAKACN 533

Query: 552 WLGAEEVWRVMRAKGLSKSYGFSRIE 577
           W   +    +++ K + K+ G S +E
Sbjct: 534 WQEMKLARDMLKHKNIGKTLGNSFVE 559



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 163/344 (47%), Gaps = 9/344 (2%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           +E+   G   +    P V+K C+       +G  +H   +K+G + D   S+ L++MY  
Sbjct: 94  EEMQRKGFSPDHFTFPFVLKVCSIIDLLV-YGQSVHNRIVKTGFELDVYTSSCLLNMYVS 152

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
                S  ++F+ +P  + ++W S+I  F  N     +L +F++M   G       +   
Sbjct: 153 CGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEITMTTA 212

Query: 136 ISLCSQIGELELGRQIH------ALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
           ++  ++  ++  G+ +H           D +   +V ++TA++D+Y+KC   + A  +F+
Sbjct: 213 LAAAARCRDIHTGKLVHDRLRQLGFDPFDTNSCFNVILATAIMDMYAKCGKLVTARNLFD 272

Query: 190 QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
           +M  RN V W +MIS           + LF  M+  G  P + T   V+ AC  +     
Sbjct: 273 KMPQRNLVVWNSMISAYSQYGRGAEALRLFVDMEMAGFVPNKATFLSVISACTHMGFRST 332

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
           G+++H  A    F     +  ALM MY +  +A   A  IF + + KDV+ W+++I G +
Sbjct: 333 GRSLHARALRASFHEFVAIGTALMDMYAKAGDA-DTALKIFSKLRKKDVMAWTTMISGLA 391

Query: 310 QSGDLSEAMKLFSRMRLE-RIEPNSVTLLAILSSCTRQSFLSHG 352
             G   EA+ +F RM  E  + P+ +T +A+L +C+    +  G
Sbjct: 392 IQGKGKEALNVFRRMEEEAEVAPDQITYIAVLWACSHLGLVEEG 435



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 145/296 (48%), Gaps = 5/296 (1%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           QL      + S  + +++ +++ MYAK  K  +A  LFD+MP R+ + WNS+I+ ++Q G
Sbjct: 234 QLGFDPFDTNSCFNVILATAIMDMYAKCGKLVTARNLFDKMPQRNLVVWNSMISAYSQYG 293

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
               +L +F +M + GFV        +IS C+ +G    GR +HA  +   SF   V + 
Sbjct: 294 RGAEALRLFVDMEMAGFVPNKATFLSVISACTHMGFRSTGRSLHARAL-RASFHEFVAIG 352

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG-V 227
           TAL+D+Y+K      AL++F ++  ++ ++WT MISG          +++FR M+ E  V
Sbjct: 353 TALMDMYAKAGDADTALKIFSKLRKKDVMAWTTMISGLAIQGKGKEALNVFRRMEEEAEV 412

Query: 228 KPTRVTLTIVLLACAELRDLRNG-KAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
            P ++T   VL AC+ L  +  G K         G +        ++ +      +    
Sbjct: 413 APDQITYIAVLWACSHLGLVEEGQKQFTSMTEVYGIEPTMEHYGCMIDLLSRAGHSKEAE 472

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSS 342
            ++ +     +  I SSI+ G    G++  A ++ S   +  +E +S  +  +LS+
Sbjct: 473 ELLMKMPTQPNATILSSILNGCEMYGNVGLANRVKS--HIVELENSSSGVYVLLSN 526



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 1/119 (0%)

Query: 379 SKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
           S+ G I  +  +F+++  R    W ++I GY   G    AL ++ EMQ  G  PD  T  
Sbjct: 50  SELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGDKFGALFMYEEMQRKGFSPDHFTFP 109

Query: 439 AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
            +L  C+   L+   +++ N ++K     L +   +C +++    G +    KV   +P
Sbjct: 110 FVLKVCSIIDLLVYGQSVHNRIVK-TGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIP 167


>gi|449524410|ref|XP_004169216.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 684

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 174/529 (32%), Positives = 297/529 (56%), Gaps = 4/529 (0%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           ++HC ++K G D+     N+L+  Y K    ++ +Q+F+E   ++ +SWNSIIN     G
Sbjct: 133 RIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKG 192

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
               +L  FR M   G    +  ++ I+ +  ++   + G++IH   +  G+ E  +F++
Sbjct: 193 RCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMGT-ETDIFIA 251

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
            +L+D+Y+K  H   A  +F  +  RN VSW AMI+    ++     I     MQ  G  
Sbjct: 252 NSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGEC 311

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
           P  VT T VL ACA L  L  GK IH      G   D  +S +L+ MY +C   LH AR 
Sbjct: 312 PNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCG-CLHSARN 370

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
           +F  ++ KD V ++ +I GYS++ D  +++ LFS MRL   +P+ V+ + ++S+C   + 
Sbjct: 371 VFNTSR-KDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAA 429

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
           L  G  VH   ++  L   + + N+L++ Y+KCG I  + ++FN++  +D  SW T+I G
Sbjct: 430 LKQGKEVHGVALRNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILG 489

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468
           YG  G  E A+ +F  M++  V+ D ++ +A+LSAC+H GLV+     F+ ++ ++    
Sbjct: 490 YGMIGELETAISMFEAMRDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSEMLAQRLEPT 549

Query: 469 AIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
            + HY C VDLLG++G +E+A K++  +P+ P   I  +L+ ACRI+G +E+    A  L
Sbjct: 550 EM-HYTCMVDLLGRAGFVEEAAKLIQQLPIAPDANIWGALLGACRIYGNVELGRRAAEHL 608

Query: 529 IEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            E +P++   Y LLS + +E+G W  A ++  +M+++G  K+ G S ++
Sbjct: 609 FELKPQHCGYYILLSNIYAETGRWDEANKIRELMKSRGAKKNPGCSWVQ 657



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 152/537 (28%), Positives = 271/537 (50%), Gaps = 20/537 (3%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G+  +    P V+K C+ +      G+++H    K G D D  + N+L+ +Y        
Sbjct: 5   GVQLDDHTFPFVLKLCSDSFDICK-GMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLND 63

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI--ISLC 139
           A +LFDEMP RD +SWN+II   + NG Y  +   +  M L   V+K  L++ I  + + 
Sbjct: 64  ARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRS-VIKPNLVSVISLLPIS 122

Query: 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSW 199
           + + + E+ R+IH   +  G  +  V    AL+D Y KC       +VF + V +NEVSW
Sbjct: 123 AALEDEEMTRRIHCYSVKVG-LDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSW 181

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
            ++I+G          ++ FR M   G +P  VT++ +L    EL   + GK IHG++  
Sbjct: 182 NSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMR 241

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
            G + D  ++ +L+ MY +   +   A  IF     +++V W+++I  Y+ +    EA++
Sbjct: 242 MGTETDIFIANSLIDMYAKSGHSTE-ASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIR 300

Query: 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
              +M+     PN+VT   +L +C R  FL  G  +H   ++ GL  D+ + N+L++MY+
Sbjct: 301 FVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYA 360

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           KCG + S+  +FN  + +D VS+  LI GY       ++L LF EM+  G +PD ++ + 
Sbjct: 361 KCGCLHSARNVFN-TSRKDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVG 419

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIA-LAIEHYACYVDLLGKSGKIEDACKVVSTMPM 498
           ++SAC +   +K+ + +    ++    + L + +    +D   K G+I+ AC++ + +  
Sbjct: 420 VISACANLAALKQGKEVHGVALRNHLYSHLFVSN--SLLDFYTKCGRIDIACRLFNQILF 477

Query: 499 KPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV-----CSESG 550
           K      ++++    + G LE     A  + EA  ++   Y L+S +     CS  G
Sbjct: 478 KDVAS-WNTMILGYGMIGELET----AISMFEAMRDDTVQYDLVSYIAVLSACSHGG 529



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 130/488 (26%), Positives = 230/488 (47%), Gaps = 66/488 (13%)

Query: 27  TAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLF 86
           ++ILP +++   +       G ++H  +++ G++ D  I+NSLI MYAK      A  +F
Sbjct: 217 SSILPVLVELECFKA-----GKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIF 271

Query: 87  DEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELE 146
             +  R+ +SWN++I  +  N   + ++    +M   G    A     ++  C+++G L 
Sbjct: 272 HNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLG 331

Query: 147 LGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGC 206
            G++IHA+ +  G     +FVS +L+D+Y+KC     A  VF     ++EVS+  +I G 
Sbjct: 332 PGKEIHAMGVRIG-LTSDLFVSNSLIDMYAKCGCLHSARNVFNTSR-KDEVSYNILIIGY 389

Query: 207 IDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDH 266
            ++ +    ++LF  M+  G KP  V+   V+ ACA L  L+ GK +HG A         
Sbjct: 390 SETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYSHL 449

Query: 267 HLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRL 326
            +S +L+  Y +C       R +F +   KDV  W+++I GY   G+L  A+ +F  MR 
Sbjct: 450 FVSNSLLDFYTKCGRIDIACR-LFNQILFKDVASWNTMILGYGMIGELETAISMFEAMRD 508

Query: 327 ERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITS 386
           + ++ + V+ +A+LS+C      SHG                             G +  
Sbjct: 509 DTVQYDLVSYIAVLSAC------SHG-----------------------------GLVER 533

Query: 387 SHQIFNEMAARDF----VSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILS 442
             Q F+EM A+      + +T ++   G  G+ EEA +L   +Q+  + PDA    A+L 
Sbjct: 534 GWQYFSEMLAQRLEPTEMHYTCMVDLLGRAGFVEEAAKL---IQQLPIAPDANIWGALLG 590

Query: 443 ACNHAGLV----KEAETLFNNVMKEKKIALAIEHYACYV---DLLGKSGKIEDACKVVST 495
           AC   G V    + AE LF          L  +H   Y+   ++  ++G+ ++A K+   
Sbjct: 591 ACRIYGNVELGRRAAEHLFE---------LKPQHCGYYILLSNIYAETGRWDEANKIREL 641

Query: 496 MPMKPSTR 503
           M  + + +
Sbjct: 642 MKSRGAKK 649



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 159/335 (47%), Gaps = 13/335 (3%)

Query: 222 MQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTE 281
           M R GV+    T   VL  C++  D+  G  +HG  +  GFD D ++   L+ +Y  C  
Sbjct: 1   MVRRGVQLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCG- 59

Query: 282 ALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER-IEPNSVTLLAIL 340
            L+ AR +F+    +DVV W++II   S +GD +EA   +  M L   I+PN V+++++L
Sbjct: 60  FLNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLL 119

Query: 341 SSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFV 400
                         +HCY +K GL+  V+  NAL++ Y KCGS+ +  Q+FNE   ++ V
Sbjct: 120 PISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEV 179

Query: 401 SWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA-----CNHAGLVKEAET 455
           SW ++I+G    G   +AL  F  M ++G +P+++T+ +IL       C  AG  KE   
Sbjct: 180 SWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAG--KEIHG 237

Query: 456 LFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIH 515
               +  E  I +A       +D+  KSG   +A  +   +  +      + + +     
Sbjct: 238 FSMRMGTETDIFIA----NSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNR 293

Query: 516 GRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESG 550
             LE    +       E  NA  +T +   C+  G
Sbjct: 294 LPLEAIRFVIQMQETGECPNAVTFTNVLPACARLG 328


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 170/491 (34%), Positives = 275/491 (56%), Gaps = 11/491 (2%)

Query: 96   SWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALV 155
            SWNS+I    + G  V +L  F  +   G +         I  CS + +L  GR  H   
Sbjct: 1982 SWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQA 2041

Query: 156  IVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTG 215
             V G FE  +FVS+AL+D+YSKC     A  +F+++ +RN VSWT+MI+G + ++  D  
Sbjct: 2042 FVFG-FETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNA 2100

Query: 216  IDLFRAMQRE--------GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
            + LF+    E         V    V +  VL AC+ +      + +HG+    GFD    
Sbjct: 2101 LLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIG 2160

Query: 268  LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM-RL 326
            +   LM  Y +C + L  ++ +F+  + KD + W+S+I  Y+QSG   EA+++F  M R 
Sbjct: 2161 VGNTLMDAYAKCGQPL-VSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRH 2219

Query: 327  ERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITS 386
              +  N+VTL A+L +C     L  G  +H  ++K  L ++V +G ++++MY KCG +  
Sbjct: 2220 VGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEM 2279

Query: 387  SHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH 446
            + + F+ M  ++  SWT +++GYG HG  +EAL +F +M  +GV+P+ IT +++L+AC+H
Sbjct: 2280 AKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSH 2339

Query: 447  AGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILS 506
            AGLV+E    FN +  +  I   IEHY C VDL G++G + +A  ++  M MKP   +  
Sbjct: 2340 AGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWG 2399

Query: 507  SLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566
            SL+ ACRIH  +++ E+ A +L E +P+N   Y LLS + +++G W   E +  +M+ + 
Sbjct: 2400 SLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQ 2459

Query: 567  LSKSYGFSRIE 577
            L K  GFS +E
Sbjct: 2460 LVKPPGFSLVE 2470



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 118/386 (30%), Positives = 186/386 (48%), Gaps = 34/386 (8%)

Query: 149 RQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCID 208
           RQIHA +I  G       ++  L+ LYS       A+ +F Q+      +W  +I     
Sbjct: 44  RQIHAKIIRSG-LSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTI 102

Query: 209 SQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHL 268
           +   +  + L++ M  +G+   + T   V+ AC     +  GK +HG     GF  D  +
Sbjct: 103 NGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFV 162

Query: 269 SAALMHMYCECTEA------------------------------LHPARIIFERTKVKDV 298
              L+  Y +C                                 L  AR IF+    K+V
Sbjct: 163 QNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNV 222

Query: 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCY 358
           V W+++I GY ++    EA++LF RM+ E I PN  T+++++ +CT    L+ G G+H Y
Sbjct: 223 VSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDY 282

Query: 359 IMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEA 418
            +K  +   V +G AL++MYSKCGSI  + ++F  M  +   +W ++I+  G HG G+EA
Sbjct: 283 AIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEA 342

Query: 419 LQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVD 478
           L LF EM+   V+PDAIT + +L AC H   VKE    F  + +   IA   EHY C  +
Sbjct: 343 LNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTE 402

Query: 479 LLGKSGKIEDA---CKVVSTMPMKPS 501
           L  +S  +++A    K V ++   PS
Sbjct: 403 LYARSNNLDEAFKSTKEVGSLANSPS 428



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 123/441 (27%), Positives = 220/441 (49%), Gaps = 26/441 (5%)

Query: 18   LHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFS 77
            L   GL    +  P  IK+C+ A      G   H  A   G + D  +S++LI MY+K  
Sbjct: 2006 LRKLGLIPTRSSFPCTIKSCS-ALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCG 2064

Query: 78   KPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL--------CGFVLKA 129
            + + A  LFDE+P R+ +SW S+I  + QN     +L +F++               L +
Sbjct: 2065 QLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDS 2124

Query: 130  ELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
             ++  ++S CS++    +   +H  V+  G F+ S+ V   L+D Y+KC   L++ +VF+
Sbjct: 2125 VVMVSVLSACSRVSGKGITEGVHGFVVKKG-FDGSIGVGNTLMDAYAKCGQPLVSKKVFD 2183

Query: 190  QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE-GVKPTRVTLTIVLLACAELRDLR 248
             M  ++++SW +MI+    S      +++F  M R  GV+   VTL+ VLLACA    LR
Sbjct: 2184 WMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALR 2243

Query: 249  NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
             GK IH        +++  +  +++ MYC+C   +  A+  F+R K K+V  W++++ GY
Sbjct: 2244 AGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGR-VEMAKKTFDRMKEKNVKSWTAMVAGY 2302

Query: 309  SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCY-IMKAGLNFD 367
               G   EA+ +F +M    ++PN +T +++L++C+    +  G   H +  MK   + +
Sbjct: 2303 GMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGW--HWFNAMKHKYDIE 2360

Query: 368  VSIGN--ALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFH---GYGEEALQL 421
              I +   +++++ + G +  ++ +   M  + DFV W +L+     H     GE A Q 
Sbjct: 2361 PGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQK 2420

Query: 422  FLEMQESGVEPDAITVLAILS 442
              E+     +PD      +LS
Sbjct: 2421 LFEL-----DPDNCGYYVLLS 2436



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/393 (29%), Positives = 212/393 (53%), Gaps = 27/393 (6%)

Query: 188  FEQMVIRNEV-SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
            F + V ++ V SW ++I+      +    +  F ++++ G+ PTR +    + +C+ L D
Sbjct: 1971 FYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCD 2030

Query: 247  LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
            L +G+  H  A+  GF+ D  +S+AL+ MY +C + L  AR +F+   +++VV W+S+I 
Sbjct: 2031 LVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQ-LKDARALFDEIPLRNVVSWTSMIT 2089

Query: 307  GYSQSGDLSEAMKLFSRMRLERIE-------P-NSVTLLAILSSCTRQSFLSHGLGVHCY 358
            GY Q+     A+ LF     E  E       P +SV ++++LS+C+R S      GVH +
Sbjct: 2090 GYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGF 2149

Query: 359  IMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEA 418
            ++K G +  + +GN LM+ Y+KCG    S ++F+ M  +D +SW ++I+ Y   G   EA
Sbjct: 2150 VVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEA 2209

Query: 419  LQLFLEM-QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACY- 476
            L++F  M +  GV  +A+T+ A+L AC HAG ++  + + + V+K     + +E+  C  
Sbjct: 2210 LEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIK-----MDLEYNVCVG 2264

Query: 477  ---VDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA-- 531
               +D+  K G++E A K    M  K + +  +++V+   +HGR + A  + ++++ A  
Sbjct: 2265 TSIIDMYCKCGRVEMAKKTFDRMKEK-NVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGV 2323

Query: 532  EPENAANYTLLSMVCSESGNWLGAEEVWRVMRA 564
            +P N   +  +   CS +G     EE W    A
Sbjct: 2324 KP-NYITFVSVLAACSHAG---LVEEGWHWFNA 2352



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 98/335 (29%), Positives = 158/335 (47%), Gaps = 33/335 (9%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           Q+H   ++SG   D +++  LI +Y+   +   A  LF ++    T +WN II   T NG
Sbjct: 45  QIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTING 104

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
              ++L +++ M   G          +I  C+    ++LG+ +H  +I  G F   VFV 
Sbjct: 105 LSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYG-FSGDVFVQ 163

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWT---------------------------- 200
             L+D Y KC H   AL+VFE+M +RN VSWT                            
Sbjct: 164 NNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVV 223

Query: 201 ---AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
              AMI+G I +Q  +  ++LF+ MQ E + P   T+  ++ AC E+  L  G+ IH YA
Sbjct: 224 SWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYA 283

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
                +   +L  AL+ MY +C  ++  A  +FE    K +  W+S+I      G   EA
Sbjct: 284 IKNCIEIGVYLGTALIDMYSKCG-SIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEA 342

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHG 352
           + LFS M    ++P+++T + +L +C     +  G
Sbjct: 343 LNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEG 377



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 159/328 (48%), Gaps = 24/328 (7%)

Query: 26   NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
            ++ ++ SV+ AC+   + +     +H   +K G D    + N+L+  YAK  +P  + ++
Sbjct: 2123 DSVVMVSVLSACSRV-SGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKV 2181

Query: 86   FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL-CGFVLKAELLAGIISLCSQIGE 144
            FD M  +D ISWNS+I  + Q+G    +LE+F  M    G    A  L+ ++  C+  G 
Sbjct: 2182 FDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGA 2241

Query: 145  LELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMIS 204
            L  G+ IH  VI     E +V V T+++D+Y KC    +A + F++M  +N  SWTAM++
Sbjct: 2242 LRAGKCIHDQVI-KMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVA 2300

Query: 205  GCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDF 264
            G          +D+F  M R GVKP  +T   VL AC+       G    G+ +      
Sbjct: 2301 GYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHA-----GLVEEGWHWFNAMKH 2355

Query: 265  DHHLSAALMHMYCEC-----TEALHPARIIFERTKVK-DVVIWSSIIRG--YSQSGDLSE 316
             + +   + H  C          L+ A  + +R K+K D V+W S++      ++ DL E
Sbjct: 2356 KYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGE 2415

Query: 317  --AMKLFSRMRLERIEPNSVTLLAILSS 342
              A KLF       ++P++     +LS+
Sbjct: 2416 IAAQKLFE------LDPDNCGYYVLLSN 2437



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/274 (29%), Positives = 130/274 (47%), Gaps = 34/274 (12%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           EQ L LYK  +   G+ ++    P VIKAC    +    G  +H + +K G   D  + N
Sbjct: 107 EQALMLYKN-MVCQGIAADKFTFPFVIKACTNFLSID-LGKVVHGSLIKYGFSGDVFVQN 164

Query: 68  SLISMYAK----------FSKP---------------------ESAYQLFDEMPYRDTIS 96
           +LI  Y K          F K                      + A ++FDE+P ++ +S
Sbjct: 165 NLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVS 224

Query: 97  WNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVI 156
           W ++IN + +N     +LE+F+ M           +  +I  C+++G L LGR IH   I
Sbjct: 225 WTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAI 284

Query: 157 VDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGI 216
            +   E+ V++ TAL+D+YSKC     A+ VFE M  ++  +W +MI+           +
Sbjct: 285 KN-CIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEAL 343

Query: 217 DLFRAMQREGVKPTRVTLTIVLLACAELRDLRNG 250
           +LF  M+R  VKP  +T   VL AC  +++++ G
Sbjct: 344 NLFSEMERVNVKPDAITFIGVLCACVHIKNVKEG 377



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 147/313 (46%), Gaps = 41/313 (13%)

Query: 237 VLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK 296
           +L  C   + LR    IH      G   D  L+  L+H+Y       + A ++F + +  
Sbjct: 33  LLQNCKNFKHLRQ---IHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAY-AILLFYQIQNP 88

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG-- 354
               W+ IIR  + +G   +A+ L+  M  + I  +  T   ++ +CT  +FLS  LG  
Sbjct: 89  CTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACT--NFLSIDLGKV 146

Query: 355 VHCYIMKAGLNFDVSIGNALMNMYSKCG-------------------------------S 383
           VH  ++K G + DV + N L++ Y KCG                                
Sbjct: 147 VHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGD 206

Query: 384 ITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
           +  + +IF+E+ +++ VSWT +I+GY  +   EEAL+LF  MQ   + P+  T+++++ A
Sbjct: 207 LQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKA 266

Query: 444 CNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTR 503
           C   G++     + +  +K   I + +      +D+  K G I+DA +V  TMP K S  
Sbjct: 267 CTEMGILTLGRGIHDYAIKN-CIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRK-SLP 324

Query: 504 ILSSLVSACRIHG 516
             +S++++  +HG
Sbjct: 325 TWNSMITSLGVHG 337


>gi|125527050|gb|EAY75164.1| hypothetical protein OsI_03056 [Oryza sativa Indica Group]
          Length = 669

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 168/534 (31%), Positives = 293/534 (54%), Gaps = 8/534 (1%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G  +H    + G  +D  + + L++ Y  F   + A ++F+EM  RD +SW S+I+   Q
Sbjct: 140 GDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVKEASKVFEEMYERDVVSWTSMISACAQ 199

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSF--ELS 164
            G + + L+M  EM   G +     +  ++S C Q   ++ GR ++  V   G F  E  
Sbjct: 200 CGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQV---GKFGIEAD 256

Query: 165 VFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR 224
           V +  AL+ +Y+KC     AL  F+ M  R   SW  +I G + +  +   + +F  M  
Sbjct: 257 VDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLL 316

Query: 225 EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
            GV P  +TL  VL ACA+L +LR G  +H Y    G   D+ L+ +L++MY +C + + 
Sbjct: 317 HGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGD-MA 375

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
            A  +F+    KDVV W+ ++ GY +    + A  LF  M++  +  + + L+++LS+C+
Sbjct: 376 AAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACS 435

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
           +   L  G  +H YI +  +  D+ + +AL++MY+KCG I ++ +IF +M  +  +SW  
Sbjct: 436 QLGALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQTLSWNA 495

Query: 405 LISGYGFHGYGEEALQLFLEMQE-SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKE 463
           +I G   +GYG+EA++LF +M E    +PD IT+ A+L AC H G+V E    F  +M  
Sbjct: 496 MIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGACAHVGMVDEGLRYF-YLMSS 554

Query: 464 KKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEM 523
             +    EHY C VDLLG++G +++A   +  MP++P+  I  SL++ACR+H R+++ ++
Sbjct: 555 LGVVPDTEHYGCIVDLLGRAGMLDEAFHFIKKMPIEPNPVIWGSLLAACRVHHRMDLGKV 614

Query: 524 LAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +   ++   P +   + L+S + +E   W   E V  +M ++G+ K+ G S ++
Sbjct: 615 IGQHIVNVAPNDVGVHVLVSNLHAEESQWDDVEHVRGLMGSRGIEKTPGHSSVQ 668



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 147/529 (27%), Positives = 266/529 (50%), Gaps = 16/529 (3%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES---AYQLF 86
           L + + ACA   +  H   +LH   +++   +D  ++  LI++ A  +       A ++F
Sbjct: 20  LLAYLDACA---SRAHLA-ELHGRLVRAHLTSDSFVAGRLIALLASPAARHDMRYARKVF 75

Query: 87  DEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELE 146
           D M   +   WN +I  ++       +L +FREM   G       +A ++S  +    L+
Sbjct: 76  DGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAAFAGLK 135

Query: 147 L---GRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMI 203
               G  IHALV   G F   VFV + L++ Y        A +VFE+M  R+ VSWT+MI
Sbjct: 136 WRSNGDAIHALVRRIG-FTSDVFVMSGLVNYYGAFRSVKEASKVFEEMYERDVVSWTSMI 194

Query: 204 SGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFD 263
           S C    ++D  + +   MQ EG+ P +VT+  +L AC + + +  G+ ++      G +
Sbjct: 195 SACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIE 254

Query: 264 FDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSR 323
            D  +  AL+ MY +C   L  A   F+    +    W+++I G+ Q+ +  EA+++F  
Sbjct: 255 ADVDIRNALISMYTKCG-CLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEE 313

Query: 324 MRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS 383
           M L  + P+ +TL+++LS+C +   L  G+ VH YI   G+  D  + N+L+NMY+KCG 
Sbjct: 314 MLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGD 373

Query: 384 ITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
           + ++ ++F  M  +D VSWT ++ GY        A  LF EM+ + V    + ++++LSA
Sbjct: 374 MAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSA 433

Query: 444 CNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTR 503
           C+  G + +   + ++ ++E  +A  +   +  VD+  K G I+ A ++   M  K  T 
Sbjct: 434 CSQLGALDKGREI-HSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHK-QTL 491

Query: 504 ILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV--CSESG 550
             ++++     +G  + A  L  Q++E +       TL +++  C+  G
Sbjct: 492 SWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGACAHVG 540



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 128/418 (30%), Positives = 210/418 (50%), Gaps = 24/418 (5%)

Query: 127 LKAELLAGIISLCSQIGELEL-GRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
           ++  LLA + +  S+    EL GR + A +  D SF     +  ALL   +  H    A 
Sbjct: 16  IRHHLLAYLDACASRAHLAELHGRLVRAHLTSD-SFVAGRLI--ALLASPAARHDMRYAR 72

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
           +VF+ M   N   W  MI G    +     + +FR M+R GV P   T+  V+ A A   
Sbjct: 73  KVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAAFA 132

Query: 246 DLR---NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
            L+   NG AIH      GF  D  + + L++ Y     ++  A  +FE    +DVV W+
Sbjct: 133 GLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYY-GAFRSVKEASKVFEEMYERDVVSWT 191

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
           S+I   +Q G   + +K+ S M+ E I PN VT++++LS+C +   +  G  V+  + K 
Sbjct: 192 SMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKF 251

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
           G+  DV I NAL++MY+KCG ++ + + F  M AR   SW TLI G+  +   +EAL++F
Sbjct: 252 GIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIF 311

Query: 423 LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGK 482
            EM   GV PD IT++++LSAC   G +++   + ++ +K+  I          +++  K
Sbjct: 312 EEMLLHGVTPDGITLVSVLSACAQLGELRKGMHV-HSYIKDNGICCDNILTNSLINMYAK 370

Query: 483 SGKIEDACKVVSTMPMKPSTRILSSLVSAC------------RIHGRLEVAEMLAHQL 528
            G +  A +V  TM  K    ++S  V  C             +   +++AE++AH++
Sbjct: 371 CGDMAAAERVFQTMTKKD---VVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEM 425


>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Vitis vinifera]
          Length = 913

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 188/598 (31%), Positives = 311/598 (52%), Gaps = 71/598 (11%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           +++  S L + TA +  V++AC       +   Q+H    + G D+D  + N LISMY+K
Sbjct: 223 RKMQFSFLKAETATIVRVLQACG-KMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSK 281

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM-----------YLC- 123
             K E A ++FD M  R+T SWNS+I+ +   GF   +  +F E+           + C 
Sbjct: 282 NGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCL 341

Query: 124 -----------------------GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGS 160
                                  GF   +  +  ++   S++G L +G++ H  V+ +G 
Sbjct: 342 LSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNG- 400

Query: 161 FELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFR 220
           F+  V+V T+L+D+Y K H    A  VF+ M  RN  +W +++SG      ++  + L  
Sbjct: 401 FDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLN 460

Query: 221 AMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA-YCCGFDFDHHLSAALMHMYCEC 279
            M++EG+KP  VT               NG  I GYA + CG         AL  ++   
Sbjct: 461 QMEKEGIKPDLVTW--------------NG-MISGYAMWGCG-------KEALAVLHQTK 498

Query: 280 TEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAI 339
           +  L P           +VV W+++I G SQ+G+  +++K F++M+ E + PNS ++  +
Sbjct: 499 SLGLTP-----------NVVSWTALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCL 547

Query: 340 LSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDF 399
           L +C   S L  G  +HC  ++ G   DV +  AL++MYSK  S+ ++H++F  +  +  
Sbjct: 548 LRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTL 607

Query: 400 VSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNN 459
            SW  +I G+   G G+EA+ +F EMQ+ GV PDAIT  A+LSAC ++GL+ E    F++
Sbjct: 608 ASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDS 667

Query: 460 VMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLE 519
           ++ + +I   +EHY C VDLLG++G +++A  ++ TMP+KP   I  +L+ +CRIH  L+
Sbjct: 668 MITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLK 727

Query: 520 VAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            AE  A  L + EP N+ANY L+  + S    W   + +  +M A G+     +S I+
Sbjct: 728 FAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQ 785



 Score =  208 bits (530), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 139/503 (27%), Positives = 245/503 (48%), Gaps = 43/503 (8%)

Query: 50  LHCTALKSGSDADP-VISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQN- 107
           +H   +K     +P   + +LIS Y  F    SA  +F     R+ + WNS +  F  + 
Sbjct: 52  MHAQMIKLPQKWNPDAAAKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSA 111

Query: 108 GFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFV 167
           G     LE+F+E++  G V  +E+ +  +  C+++ ++ LG +IH  +I  G F+L V++
Sbjct: 112 GSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRG-FDLDVYL 170

Query: 168 STALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV 227
             AL++ Y +C     A +VF +M     + W   I   + S+    G++LFR MQ   +
Sbjct: 171 RCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFL 230

Query: 228 KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPAR 287
           K    T+  VL AC ++  L   K IHGY +  G D D  L   L+ MY +    L  AR
Sbjct: 231 KAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSK-NGKLELAR 289

Query: 288 IIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF-------------------------- 321
            +F+  + ++   W+S+I  Y+  G L++A  LF                          
Sbjct: 290 RVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHG 349

Query: 322 ---------SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN 372
                     RM+ E  +PNS ++ ++L + +   FL+ G   H Y+++ G + DV +G 
Sbjct: 350 YKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGT 409

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
           +L++MY K  S+TS+  +F+ M  R+  +W +L+SGY F G  E+AL+L  +M++ G++P
Sbjct: 410 SLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKP 469

Query: 433 DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKV 492
           D +T   ++S     G  KEA  + +   K   +   +  +   +    ++G   D+ K 
Sbjct: 470 DLVTWNGMISGYAMWGCGKEALAVLHQT-KSLGLTPNVVSWTALISGSSQAGNNRDSLKF 528

Query: 493 VSTMPMK---PSTRILSSLVSAC 512
            + M  +   P++  ++ L+ AC
Sbjct: 529 FAQMQQEGVMPNSASITCLLRAC 551



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 137/526 (26%), Positives = 239/526 (45%), Gaps = 84/526 (15%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           +ELH  G+  ++ +    +K C         G+++H   +K G D D  +  +L++ Y +
Sbjct: 122 KELHGKGVVFDSEVYSVALKTCTRVMD-IWLGMEIHGCLIKRGFDLDVYLRCALMNFYGR 180

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
               E A Q+F EMP  + + WN  I    Q+    + +E+FR+M       +   +  +
Sbjct: 181 CWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRV 240

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           +  C ++G L   +QIH  V   G  +  V +   L+ +YSK     +A RVF+ M  RN
Sbjct: 241 LQACGKMGALNAAKQIHGYVFRFG-LDSDVSLCNPLISMYSKNGKLELARRVFDSMENRN 299

Query: 196 EVSWTAMIS------------------------------GCIDSQNYDTG-----IDLFR 220
             SW +MIS                               C+ S ++  G     +++ +
Sbjct: 300 TSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQ 359

Query: 221 AMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECT 280
            MQ EG KP   ++T VL A +EL  L  GK  HGY    GFD D ++  +L+ MY +  
Sbjct: 360 RMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVK-N 418

Query: 281 EALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAIL 340
            +L  A+ +F+  K +++  W+S++ GYS  G   +A++L ++M  E I+P+ VT   ++
Sbjct: 419 HSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMI 478

Query: 341 SSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCG--SITSSHQIFNEMAARD 398
           S                Y M                    CG  ++   HQ  +     +
Sbjct: 479 SG---------------YAMWG------------------CGKEALAVLHQTKSLGLTPN 505

Query: 399 FVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAE---- 454
            VSWT LISG    G   ++L+ F +MQ+ GV P++ ++  +L AC    L+++ +    
Sbjct: 506 VVSWTALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHC 565

Query: 455 -TLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
            ++ N  +++  +A A+      +D+  KS  +++A KV   +  K
Sbjct: 566 LSIRNGFIEDVFVATAL------IDMYSKSSSLKNAHKVFRRIQNK 605



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 128/471 (27%), Positives = 209/471 (44%), Gaps = 82/471 (17%)

Query: 1   MVSKHFYEQTLHLYKQE-------LHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCT 53
           ++S HF    LH YK+E       +   G   N++ + SV++A +      + G + H  
Sbjct: 341 LLSGHF----LHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAIS-ELGFLNMGKETHGY 395

Query: 54  ALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRS 113
            L++G D D  +  SLI MY K     SA  +FD M  R+  +WNS+++ ++  G +  +
Sbjct: 396 VLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDA 455

Query: 114 LEMFREMYLCGFVLKAELLA--GIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTAL 171
           L +  +M   G  +K +L+   G+IS  +  G               G   L+V   T  
Sbjct: 456 LRLLNQMEKEG--IKPDLVTWNGMISGYAMWG--------------CGKEALAVLHQTKS 499

Query: 172 LDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTR 231
           L L                    N VSWTA+ISG   + N    +  F  MQ+EGV P  
Sbjct: 500 LGL------------------TPNVVSWTALISGSSQAGNNRDSLKFFAQMQQEGVMPNS 541

Query: 232 VTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFE 291
            ++T +L ACA L  L+ GK IH  +   GF  D  ++ AL+ MY + + +L  A  +F 
Sbjct: 542 ASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSK-SSSLKNAHKVFR 600

Query: 292 RTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSH 351
           R + K +  W+ +I G++  G   EA+ +F+ M+   + P+++T  A+LS+C     +  
Sbjct: 601 RIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGE 660

Query: 352 GLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGF 411
           G             FD               S+ + ++I   +       +  ++   G 
Sbjct: 661 GWKY----------FD---------------SMITDYRIVPRLE-----HYCCMVDLLGR 690

Query: 412 HGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462
            GY +EA  L   M    ++PDA    A+L +C     +K AET   N+ K
Sbjct: 691 AGYLDEAWDLIHTMP---LKPDATIWGALLGSCRIHKNLKFAETAAKNLFK 738


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 163/554 (29%), Positives = 305/554 (55%), Gaps = 4/554 (0%)

Query: 25  SNTAILPSVIKACAYAQTHQ-HFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAY 83
           S+T  +  +I+   YA+T + + G QLH   ++ G   +  +SN  +++Y+K  + +   
Sbjct: 73  SDTKTVAHLIQT--YARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTI 130

Query: 84  QLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIG 143
           +LFD+M  R+ +SW SII  F  N  +  +L  F +M + G +     L+ ++  C+ +G
Sbjct: 131 KLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLG 190

Query: 144 ELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMI 203
            ++ G Q+H LV+  G F   +FV + L D+YSKC     A + FE+M  ++ V WT+MI
Sbjct: 191 AIQFGTQVHCLVVKCG-FGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMI 249

Query: 204 SGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFD 263
            G + + ++   +  +  M  + V   +  L   L AC+ L+    GK++H      GF+
Sbjct: 250 DGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLHATILKLGFE 309

Query: 264 FDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSR 323
           ++  +  AL  MY +  + +  + +    +    +V  ++II GY +   + +A+  F  
Sbjct: 310 YETFIGNALTDMYSKSGDMVSASNVFQIHSDCISIVSLTAIIDGYVEMDQIEKALSTFVD 369

Query: 324 MRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS 383
           +R   IEPN  T  +++ +C  Q+ L HG  +H  ++K     D  + + L++MY KCG 
Sbjct: 370 LRRRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPFVSSTLVDMYGKCGL 429

Query: 384 ITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
              S Q+F+E+   D ++W TL+  +  HG G  A++ F  M   G++P+A+T + +L  
Sbjct: 430 FDHSIQLFDEIENPDEIAWNTLVGVFSQHGLGRNAIETFNGMIHRGLKPNAVTFVNLLKG 489

Query: 444 CNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTR 503
           C+HAG+V++    F+++ K   +    EHY+C +DLLG++GK+++A   ++ MP +P+  
Sbjct: 490 CSHAGMVEDGLNYFSSMEKIYGVVPKEEHYSCVIDLLGRAGKLKEAEDFINNMPFEPNVF 549

Query: 504 ILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMR 563
              S + AC+IHG +E A+  A +L++ EPEN+  + LLS + ++   W   + + ++++
Sbjct: 550 GWCSFLGACKIHGDMERAKFAADKLMKLEPENSGAHVLLSNIYAKEKQWEDVQSLRKMIK 609

Query: 564 AKGLSKSYGFSRIE 577
              ++K  G+S ++
Sbjct: 610 DGNMNKLPGYSWVD 623



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 126/446 (28%), Positives = 219/446 (49%), Gaps = 17/446 (3%)

Query: 113 SLEMFREMYLCGFVL-KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTAL 171
           S    + ++  G  L   + +A +I   ++  EL  G+Q+HA++I  G    + F+S   
Sbjct: 58  SFSFLKNLFGSGHKLSDTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLP-NTFLSNHF 116

Query: 172 LDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTR 231
           L+LYSKC      +++F++M  RN VSWT++I+G   +  +   +  F  M+ EG   T+
Sbjct: 117 LNLYSKCGELDYTIKLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQ 176

Query: 232 VTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFE 291
             L+ VL AC  L  ++ G  +H     CGF  +  + + L  MY +C E L  A   FE
Sbjct: 177 FALSSVLQACTSLGAIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGE-LSDACKAFE 235

Query: 292 RTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSH 351
               KD V+W+S+I G+ ++GD  +A+  + +M  + +  +   L + LS+C+     S 
Sbjct: 236 EMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSF 295

Query: 352 GLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFN-EMAARDFVSWTTLISGYG 410
           G  +H  I+K G  ++  IGNAL +MYSK G + S+  +F         VS T +I GY 
Sbjct: 296 GKSLHATILKLGFEYETFIGNALTDMYSKSGDMVSASNVFQIHSDCISIVSLTAIIDGYV 355

Query: 411 FHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAI 470
                E+AL  F++++  G+EP+  T  +++ AC +   ++    L   V+   K     
Sbjct: 356 EMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVV---KFNFKR 412

Query: 471 EHY--ACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG----RLEVAEML 524
           + +  +  VD+ GK G  + + ++   +   P     ++LV     HG     +E    +
Sbjct: 413 DPFVSSTLVDMYGKCGLFDHSIQLFDEIE-NPDEIAWNTLVGVFSQHGLGRNAIETFNGM 471

Query: 525 AHQLIEAEPENAANYTLLSMVCSESG 550
            H+ ++    NA  +  L   CS +G
Sbjct: 472 IHRGLKP---NAVTFVNLLKGCSHAG 494



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 67/132 (50%), Gaps = 1/132 (0%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           +L   G+  N     S+IKACA     +H G QLH   +K     DP +S++L+ MY K 
Sbjct: 369 DLRRRGIEPNEFTFTSLIKACANQAKLEH-GSQLHGQVVKFNFKRDPFVSSTLVDMYGKC 427

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
              + + QLFDE+   D I+WN+++  F+Q+G    ++E F  M   G    A     ++
Sbjct: 428 GLFDHSIQLFDEIENPDEIAWNTLVGVFSQHGLGRNAIETFNGMIHRGLKPNAVTFVNLL 487

Query: 137 SLCSQIGELELG 148
             CS  G +E G
Sbjct: 488 KGCSHAGMVEDG 499


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 182/563 (32%), Positives = 301/563 (53%), Gaps = 9/563 (1%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
            +   G++ N     SV+ A A +Q     G ++H  ++K G  +   + NSLI+MY+K 
Sbjct: 191 RMRAEGVWPNPFTFTSVLSAVA-SQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKC 249

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
              E A  +F +M  RD +SWN+++     N   + +L++F +       L     + +I
Sbjct: 250 GLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVI 309

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV-IRN 195
            LC+ + +L L RQ+H+ V+  G F     V TA++D YSKC     A  +F  M   +N
Sbjct: 310 KLCANLKQLALARQLHSCVLKHG-FHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQN 368

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
            VSWTAMI GCI + +      LF  M+ + VKP   T + VL A   +   +    IH 
Sbjct: 369 VVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTASIPILLPQ----IHA 424

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
                 +     +  AL+  Y +       A  IF+    KDVV WS+++  YSQ+GD  
Sbjct: 425 QIIKTNYQHAPSVGTALLASYSKLGNT-EEALSIFKMIDHKDVVAWSAMLSCYSQAGDCD 483

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF-LSHGLGVHCYIMKAGLNFDVSIGNAL 374
            A  +F +M ++ ++PN  T+ + + +C   +  +  G   H   +K      + +G+AL
Sbjct: 484 GATNVFIKMSMQGMKPNEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVGSAL 543

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           + MY++ GSI S+  +F     RD VSW ++ISGY  HGY +EAL  F +M+  G+E D 
Sbjct: 544 VTMYARKGSIDSARIVFERQTDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEMDG 603

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS 494
            T LA++  C HAGLVKE +  F++++ +  I+  +EHY+C VDL  ++GK+++   ++ 
Sbjct: 604 ATFLAVIVGCTHAGLVKEGQQYFDSMVMDHNISPTMEHYSCMVDLYSRAGKLDETMNLIE 663

Query: 495 TMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLG 554
            MP      +  +L+ ACR+H  +E+ ++ A +L+  EP+++A Y LLS + + +G W  
Sbjct: 664 GMPFPAGAMVWRTLLGACRVHKNVELGKLAAQKLLLLEPDDSATYVLLSNIYAAAGRWKE 723

Query: 555 AEEVWRVMRAKGLSKSYGFSRIE 577
            +EV ++M +K + K  G S I+
Sbjct: 724 RDEVRKLMDSKKVKKEAGCSWIQ 746



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 128/474 (27%), Positives = 226/474 (47%), Gaps = 8/474 (1%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD-ADPVISNSLISMYAK 75
           ++H  G     A+   V+K C         G QLHC  +K G D A+  +  +L+ MY K
Sbjct: 90  DVHRCGRVQGAAV-SRVLKVCGLIPDRVS-GEQLHCLCVKCGFDRAEVGVGTALVDMYMK 147

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
               E    +F+ MP R+ ++W S++  + Q       + +F  M   G          +
Sbjct: 148 CGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSV 207

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           +S  +  G ++LGR++HA  +  G    +VFV  +L+++YSKC     A  VF QM  R+
Sbjct: 208 LSAVASQGAVDLGRRVHAQSVKFGC-RSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRD 266

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
            VSW  +++G + +++    + LF   +    K ++ T + V+  CA L+ L   + +H 
Sbjct: 267 MVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHS 326

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
                GF  D ++  A+M  Y +C E      I       ++VV W+++I G  Q+ D+ 
Sbjct: 327 CVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIP 386

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
            A  LFSRMR + ++PN  T   +L++ +    L     +H  I+K       S+G AL+
Sbjct: 387 LAAALFSRMREDNVKPNEFTYSTVLTA-SIPILLPQ---IHAQIIKTNYQHAPSVGTALL 442

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
             YSK G+   +  IF  +  +D V+W+ ++S Y   G  + A  +F++M   G++P+  
Sbjct: 443 ASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQGMKPNEF 502

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
           T+ + + AC       +    F+ +  + +   AI   +  V +  + G I+ A
Sbjct: 503 TISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVGSALVTMYARKGSIDSA 556



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 123/466 (26%), Positives = 216/466 (46%), Gaps = 37/466 (7%)

Query: 82  AYQLFDEMPYRDTISWNS-----IINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
           A Q  D MP RD  + +S     I++   +      +L+ F +++ CG V  A + + ++
Sbjct: 48  ARQALDGMPSRDAAAGSSSNPVAIVDYGRRGKGRGEALDHFVDVHRCGRVQGAAV-SRVL 106

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
            +C  I +   G Q+H L +  G     V V TAL+D+Y KC        VFE M  RN 
Sbjct: 107 KVCGLIPDRVSGEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGMPKRNV 166

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           V+WT++++G +  +     + LF  M+ EGV P   T T VL A A    +  G+ +H  
Sbjct: 167 VTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGRRVHAQ 226

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
           +   G      +  +L++MY +C   +  A+ +F + + +D+V W++++ G   +    E
Sbjct: 227 SVKFGCRSTVFVCNSLINMYSKCG-LVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLE 285

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
           A++LF   R    + +  T   ++  C     L+    +H  ++K G + D ++  A+M+
Sbjct: 286 ALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVMTAIMD 345

Query: 377 MYSKCGSITSSHQIFNEM-AARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
            YSKCG +  +  IF  M  +++ VSWT +I G   +     A  LF  M+E  V+P+  
Sbjct: 346 AYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEF 405

Query: 436 TVLAILSAC-------NHAGLVKE--------------AETLFNNVMKEKKIALAIEH-- 472
           T   +L+A         HA ++K               + +   N  +   I   I+H  
Sbjct: 406 TYSTVLTASIPILLPQIHAQIIKTNYQHAPSVGTALLASYSKLGNTEEALSIFKMIDHKD 465

Query: 473 ---YACYVDLLGKSGKIEDACKV---VSTMPMKPSTRILSSLVSAC 512
              ++  +    ++G  + A  V   +S   MKP+   +SS + AC
Sbjct: 466 VVAWSAMLSCYSQAGDCDGATNVFIKMSMQGMKPNEFTISSAIDAC 511



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 160/324 (49%), Gaps = 18/324 (5%)

Query: 213 DTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFD-FDHHLSAA 271
           D  +D+ R  + +G   +RV     L  C  + D  +G+ +H     CGFD  +  +  A
Sbjct: 86  DHFVDVHRCGRVQGAAVSRV-----LKVCGLIPDRVSGEQLHCLCVKCGFDRAEVGVGTA 140

Query: 272 LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP 331
           L+ MY +C   +   R++FE    ++VV W+S++ GY Q    S+ M LF RMR E + P
Sbjct: 141 LVDMYMKCG-GVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWP 199

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIF 391
           N  T  ++LS+   Q  +  G  VH   +K G    V + N+L+NMYSKCG +  +  +F
Sbjct: 200 NPFTFTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVF 259

Query: 392 NEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVK 451
            +M  RD VSW TL++G   + +  EALQLF + + S  +    T   ++  C +   + 
Sbjct: 260 RQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLA 319

Query: 452 EAETLFNNVMK-----EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILS 506
            A  L + V+K     +  +  AI      +D   K G+++DA  +   MP   +    +
Sbjct: 320 LARQLHSCVLKHGFHSDGNVMTAI------MDAYSKCGELDDAFNIFLLMPGSQNVVSWT 373

Query: 507 SLVSACRIHGRLEVAEMLAHQLIE 530
           +++  C  +  + +A  L  ++ E
Sbjct: 374 AMIGGCIQNADIPLAAALFSRMRE 397


>gi|15226150|ref|NP_180924.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101011|sp|P93005.1|PP181_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33680
 gi|1707007|gb|AAC69139.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253774|gb|AEC08868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 727

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 187/576 (32%), Positives = 308/576 (53%), Gaps = 21/576 (3%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           +E+    +  N   L  + KA +  Q+    G Q H   +K  S  D  +  SL+ MY K
Sbjct: 107 REMRAQDILPNAYTLAGIFKAESSLQSST-VGRQAHALVVKMSSFGDIYVDTSLVGMYCK 165

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE----- 130
               E   ++F  MP R+T +W+++++ +   G    ++++F       F+ + E     
Sbjct: 166 AGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNL-----FLREKEEGSDS 220

Query: 131 --LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
             +   ++S  +    + LGRQIH + I +G     V +S AL+ +YSKC     A ++F
Sbjct: 221 DYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGF-VALSNALVTMYSKCESLNEACKMF 279

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDT--GIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           +    RN ++W+AM++G   SQN ++   + LF  M   G+KP+  T+  VL AC+++  
Sbjct: 280 DSSGDRNSITWSAMVTGY--SQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICY 337

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L  GK +H +    GF+     + AL+ MY +    L  AR  F+  + +DV +W+S+I 
Sbjct: 338 LEEGKQLHSFLLKLGFERHLFATTALVDMYAKAG-CLADARKGFDCLQERDVALWTSLIS 396

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           GY Q+ D  EA+ L+ RM+   I PN  T+ ++L +C+  + L  G  VH + +K G   
Sbjct: 397 GYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGL 456

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           +V IG+AL  MYSKCGS+   + +F     +D VSW  +ISG   +G G+EAL+LF EM 
Sbjct: 457 EVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEML 516

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
             G+EPD +T + I+SAC+H G V+     FN +  +  +   ++HYAC VDLL ++G++
Sbjct: 517 AEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQL 576

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546
           ++A + + +  +     +   L+SAC+ HG+ E+      +L+      ++ Y  LS + 
Sbjct: 577 KEAKEFIESANIDHGLCLWRILLSACKNHGKCELGVYAGEKLMALGSRESSTYVQLSGIY 636

Query: 547 SESGNWLGAEEVWRVMRAKGLSKSYGFSRIE--NEY 580
           +  G     E VW+ MRA G+SK  G S IE  N+Y
Sbjct: 637 TALGRMRDVERVWKHMRANGVSKEVGCSWIELKNQY 672



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 158/545 (28%), Positives = 277/545 (50%), Gaps = 19/545 (3%)

Query: 18  LHPSGLYSNTAILP---SVIKACAYAQTHQHF--GLQLHCTALKSGSDADPVISNSLISM 72
           +HPS     T + P   +++K   +    ++   G  +H   +++G+      +N L++ 
Sbjct: 1   MHPSTF--QTELNPHTSTLLKKLTHHSQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNF 58

Query: 73  YAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRS---LEMFREMYLCGFVLKA 129
           YAK  K   A+ +F+ +  +D +SWNS+I  ++QNG    S   +++FREM     +  A
Sbjct: 59  YAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNA 118

Query: 130 ELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
             LAGI    S +    +GRQ HALV+   SF   ++V T+L+ +Y K       L+VF 
Sbjct: 119 YTLAGIFKAESSLQSSTVGRQAHALVVKMSSFG-DIYVDTSLVGMYCKAGLVEDGLKVFA 177

Query: 190 QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK--PTRVTLTIVLLACAELRDL 247
            M  RN  +W+ M+SG       +  I +F    RE  +   +    T VL + A    +
Sbjct: 178 YMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYV 237

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
             G+ IH      G      LS AL+ MY +C E+L+ A  +F+ +  ++ + WS+++ G
Sbjct: 238 GLGRQIHCITIKNGLLGFVALSNALVTMYSKC-ESLNEACKMFDSSGDRNSITWSAMVTG 296

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
           YSQ+G+  EA+KLFSRM    I+P+  T++ +L++C+   +L  G  +H +++K G    
Sbjct: 297 YSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERH 356

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
           +    AL++MY+K G +  + + F+ +  RD   WT+LISGY  +   EEAL L+  M+ 
Sbjct: 357 LFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKT 416

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487
           +G+ P+  T+ ++L AC+    ++  + +  + +K     L +   +    +  K G +E
Sbjct: 417 AGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKH-GFGLEVPIGSALSTMYSKCGSLE 475

Query: 488 DACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA-EMLAHQLIEA-EPENAANYTLLSMV 545
           D   V    P K      ++++S    +G+ + A E+    L E  EP++     ++S  
Sbjct: 476 DGNLVFRRTPNKDVVS-WNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIIS-A 533

Query: 546 CSESG 550
           CS  G
Sbjct: 534 CSHKG 538



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 124/408 (30%), Positives = 221/408 (54%), Gaps = 13/408 (3%)

Query: 10  TLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSL 69
            L L ++E      Y  TA+L S+      A  +   G Q+HC  +K+G      +SN+L
Sbjct: 208 NLFLREKEEGSDSDYVFTAVLSSLA-----ATIYVGLGRQIHCITIKNGLLGFVALSNAL 262

Query: 70  ISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKA 129
           ++MY+K      A ++FD    R++I+W++++  ++QNG  + ++++F  M+  G     
Sbjct: 263 VTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSE 322

Query: 130 ELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
             + G+++ CS I  LE G+Q+H+ ++  G FE  +F +TAL+D+Y+K      A + F+
Sbjct: 323 YTIVGVLNACSDICYLEEGKQLHSFLLKLG-FERHLFATTALVDMYAKAGCLADARKGFD 381

Query: 190 QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
            +  R+   WT++ISG + + + +  + L+R M+  G+ P   T+  VL AC+ L  L  
Sbjct: 382 CLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLEL 441

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
           GK +HG+    GF  +  + +AL  MY +C  +L    ++F RT  KDVV W+++I G S
Sbjct: 442 GKQVHGHTIKHGFGLEVPIGSALSTMYSKCG-SLEDGNLVFRRTPNKDVVSWNAMISGLS 500

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
            +G   EA++LF  M  E +EP+ VT + I+S+C+ + F+  G   +  +M   +  D  
Sbjct: 501 HNGQGDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGW-FYFNMMSDQIGLDPK 559

Query: 370 IGN--ALMNMYSKCGSITSSHQIFNEMAARD--FVSWTTLISGYGFHG 413
           + +   ++++ S+ G +  + + F E A  D     W  L+S    HG
Sbjct: 560 VDHYACMVDLLSRAGQLKEAKE-FIESANIDHGLCLWRILLSACKNHG 606


>gi|356558562|ref|XP_003547574.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 846

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 192/561 (34%), Positives = 315/561 (56%), Gaps = 8/561 (1%)

Query: 22  GLYSNTAILPSVIKAC--AYAQTHQHF--GLQLHCTALKSGSDADPVISNSLISMYAKFS 77
           G+ ++ +++ SV   C  +   T   F  G Q+H   + SG + DP ++N+L++MY+K  
Sbjct: 236 GMRTSYSMVNSVTYTCILSICATRGKFCLGTQVHGLVIGSGFEFDPQVANTLVAMYSKCG 295

Query: 78  KPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS 137
               A +LF+ MP  DT++WN +I  + QNGF   +  +F  M   G    +   A  + 
Sbjct: 296 NLFDARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLP 355

Query: 138 LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197
              + G L   +++H+  IV       V++ +AL+D+Y K     +A ++F+Q  + +  
Sbjct: 356 SILESGSLRHCKEVHSY-IVRHRVPFDVYLKSALIDIYFKGGDVEMARKIFQQNTLVDVA 414

Query: 198 SWTAMISG-CIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
             TAMISG  +   N D  I+ FR + +EG+ P  +T+  VL ACA L  L+ GK +H  
Sbjct: 415 VCTAMISGYVLHGLNIDA-INTFRWLIQEGMVPNSLTMASVLPACAALAALKLGKELHCD 473

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
                 +   ++ +A+  MY +C   L  A   F R    D + W+S+I  +SQ+G    
Sbjct: 474 ILKKQLENIVNVGSAITDMYAKCGR-LDLAYEFFRRMSETDSICWNSMISSFSQNGKPEM 532

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
           A+ LF +M +   + +SV+L + LSS      L +G  +H Y+++   + D  + +AL++
Sbjct: 533 AVDLFRQMGMSGAKFDSVSLSSALSSAANLPALYYGKEMHGYVIRNAFSSDTFVASALID 592

Query: 377 MYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAIT 436
           MYSKCG +  +  +FN MA ++ VSW ++I+ YG HG   E L LF EM  +GV PD +T
Sbjct: 593 MYSKCGKLALARCVFNLMAGKNEVSWNSIIAAYGNHGCARECLDLFHEMLRAGVHPDHVT 652

Query: 437 VLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
            L I+SAC HAGLV E    F+ + +E  I   +EHYAC VDL G++G++ +A   + +M
Sbjct: 653 FLVIISACGHAGLVGEGIHYFHCMTREYGIGARMEHYACMVDLYGRAGRLHEAFDAIKSM 712

Query: 497 PMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAE 556
           P  P   +  +L+ ACR+HG +E+A++ +  L+E +P+N+  Y LLS V +++G W    
Sbjct: 713 PFTPDAGVWGTLLGACRLHGNVELAKLASRHLLELDPKNSGYYVLLSNVHADAGEWGSVL 772

Query: 557 EVWRVMRAKGLSKSYGFSRIE 577
           +V R+M+ KG+ K  G+S I+
Sbjct: 773 KVRRLMKEKGVQKIPGYSWID 793



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 154/542 (28%), Positives = 278/542 (51%), Gaps = 12/542 (2%)

Query: 13  LYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISM 72
           L+  ++  S +  +    P VIKAC     +    + +H TA   G   D  + ++LI +
Sbjct: 131 LFYFKMLGSNVSPDKYTFPYVIKACG-GLNNVPLCMVVHNTARSLGFHVDLFVGSALIKL 189

Query: 73  YAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELL 132
           YA       A ++FDE+P RDTI WN +++ + ++G +  ++  F  M     ++ +   
Sbjct: 190 YADNGYICDARRVFDELPQRDTILWNVMLHGYVKSGDFNNAMGTFCGMRTSYSMVNSVTY 249

Query: 133 AGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV 192
             I+S+C+  G+  LG Q+H LVI  G FE    V+  L+ +YSKC +   A ++F  M 
Sbjct: 250 TCILSICATRGKFCLGTQVHGLVIGSG-FEFDPQVANTLVAMYSKCGNLFDARKLFNTMP 308

Query: 193 IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKA 252
             + V+W  +I+G + +   D    LF AM   GVKP  VT    L +  E   LR+ K 
Sbjct: 309 QTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKE 368

Query: 253 IHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSG 312
           +H Y       FD +L +AL+ +Y +  + +  AR IF++  + DV + +++I GY   G
Sbjct: 369 VHSYIVRHRVPFDVYLKSALIDIYFKGGD-VEMARKIFQQNTLVDVAVCTAMISGYVLHG 427

Query: 313 DLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN 372
              +A+  F  +  E + PNS+T+ ++L +C   + L  G  +HC I+K  L   V++G+
Sbjct: 428 LNIDAINTFRWLIQEGMVPNSLTMASVLPACAALAALKLGKELHCDILKKQLENIVNVGS 487

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
           A+ +MY+KCG +  +++ F  M+  D + W ++IS +  +G  E A+ LF +M  SG + 
Sbjct: 488 AITDMYAKCGRLDLAYEFFRRMSETDSICWNSMISSFSQNGKPEMAVDLFRQMGMSGAKF 547

Query: 433 DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDAC 490
           D++++ + LS+  +   +   + +   V++    A + + +  +  +D+  K GK+  A 
Sbjct: 548 DSVSLSSALSSAANLPALYYGKEMHGYVIRN---AFSSDTFVASALIDMYSKCGKLALAR 604

Query: 491 KVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLSMVCSE 548
            V + M  K      +S+++A   HG       L H+++ A   P++     ++S  C  
Sbjct: 605 CVFNLMAGKNEVS-WNSIIAAYGNHGCARECLDLFHEMLRAGVHPDHVTFLVIIS-ACGH 662

Query: 549 SG 550
           +G
Sbjct: 663 AG 664



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 106/385 (27%), Positives = 190/385 (49%), Gaps = 4/385 (1%)

Query: 132 LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM 191
           L  +   CS    ++  RQ+H  +IV G  ++   +S+ +L LY  C        +F  +
Sbjct: 47  LESLFRACSDASVVQQARQVHTQIIVGGMSDVCA-LSSRVLGLYVLCGRISDGGNLFFGL 105

Query: 192 VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGK 251
            + N + W  MI G      +D  +  +  M    V P + T   V+ AC  L ++    
Sbjct: 106 ELCNALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPLCM 165

Query: 252 AIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQS 311
            +H  A   GF  D  + +AL+ +Y +    +  AR +F+    +D ++W+ ++ GY +S
Sbjct: 166 VVHNTARSLGFHVDLFVGSALIKLYAD-NGYICDARRVFDELPQRDTILWNVMLHGYVKS 224

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
           GD + AM  F  MR      NSVT   ILS C  +     G  VH  ++ +G  FD  + 
Sbjct: 225 GDFNNAMGTFCGMRTSYSMVNSVTYTCILSICATRGKFCLGTQVHGLVIGSGFEFDPQVA 284

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
           N L+ MYSKCG++  + ++FN M   D V+W  LI+GY  +G+ +EA  LF  M  +GV+
Sbjct: 285 NTLVAMYSKCGNLFDARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVK 344

Query: 432 PDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACK 491
           PD++T  + L +   +G ++  + + + +++  ++   +   +  +D+  K G +E A K
Sbjct: 345 PDSVTFASFLPSILESGSLRHCKEVHSYIVRH-RVPFDVYLKSALIDIYFKGGDVEMARK 403

Query: 492 VVSTMPMKPSTRILSSLVSACRIHG 516
           +     +     + ++++S   +HG
Sbjct: 404 IFQQNTLV-DVAVCTAMISGYVLHG 427


>gi|449476598|ref|XP_004154781.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Cucumis sativus]
          Length = 709

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 183/577 (31%), Positives = 309/577 (53%), Gaps = 33/577 (5%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V K F+   L ++   +     + +    P VIKAC+   +  + G+ +H  AL SG  +
Sbjct: 159 VDKGFHFDALRVFDSMICSGKFWPDKYTFPLVIKACS-VMSMLNVGVLIHGRALVSGFSS 217

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           +  + NSL++MY    K   A Q+F+ M  R  +SWN++I+ + QNG    +L +F  M 
Sbjct: 218 NMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTMISGWFQNGRPEEALAVFNSMM 277

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
                  +  +   +  C  + ELELG ++H LV      +  + V  AL+D+YS+C   
Sbjct: 278 DARVEPDSATIVSALPSCGYLKELELGIKVHKLV-QKNHLQEKIEVRNALVDMYSRCGGI 336

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             A  VF +   ++ ++WT+MI+G I + N  + + L  AMQ +GV P  VTL  +L AC
Sbjct: 337 DEASLVFAETKEKDVITWTSMINGYIMNGNAKSALALCPAMQLDGVVPNAVTLASLLSAC 396

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
                                       A+L +MY +C  A+  +  +F +T  K  V W
Sbjct: 397 ----------------------------ASLCYMYAKCN-AVSYSFQVFAKTSKKRTVPW 427

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           ++++ G   +    EA+ LF  M +E +E N  T  +++ +    + L   + +H Y+++
Sbjct: 428 NALLSGLIHNELAREAVGLFKSMLIEEVEANHATFNSVIPAYAILADLKQVMNLHSYLVR 487

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA--ARDFVSWTTLISGYGFHGYGEEAL 419
           +G    +++   L++MYSKCGS+  +H+IF+E+    +D + W+ LI+GYG HG+GE A+
Sbjct: 488 SGFISKIAVITGLIDMYSKCGSLDYAHKIFDEIPNKEKDIIVWSVLIAGYGMHGHGETAV 547

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479
            LF +M  SG++P+ IT  ++L AC+H GLV +  TLF  +++    +    HY C VDL
Sbjct: 548 LLFNQMVHSGMQPNEITFTSVLHACSHRGLVDDGLTLFKYMIENYPSSPLPNHYTCVVDL 607

Query: 480 LGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANY 539
           LG++G++++A  ++ +MP + +  I  +L+ AC IH  +E+ E+ A +L E EPE+  NY
Sbjct: 608 LGRAGRLDEAYDLIKSMPFQQNHSIWGALLGACLIHQNVELGEVAAERLFELEPESTGNY 667

Query: 540 TLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
            LL+ + +  G W  AE V  +M   GL K+   S +
Sbjct: 668 ILLANIYAAVGRWKDAENVRHIMSKIGLRKTPAQSSV 704



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 133/473 (28%), Positives = 222/473 (46%), Gaps = 36/473 (7%)

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG-FVLKAELLAGIISLCS 140
           A +LFD++       WN+II  +   GF+  +L +F  M   G F         +I  CS
Sbjct: 136 ARKLFDDLSDPSLFLWNAIIKMYVDKGFHFDALRVFDSMICSGKFWPDKYTFPLVIKACS 195

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
            +  L +G  IH   +V G F  ++FV  +LL +Y  C    +A +VF  M+ R+ VSW 
Sbjct: 196 VMSMLNVGVLIHGRALVSG-FSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWN 254

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
            MISG   +   +  + +F +M    V+P   T+   L +C  L++L  G  +H      
Sbjct: 255 TMISGWFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCGYLKELELGIKVHKLVQKN 314

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
                  +  AL+ MY  C   +  A ++F  TK KDV+ W+S+I GY  +G+   A+ L
Sbjct: 315 HLQEKIEVRNALVDMYSRCG-GIDEASLVFAETKEKDVITWTSMINGYIMNGNAKSALAL 373

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
              M+L+ + PN+VTL ++LS+C             CY                  MY+K
Sbjct: 374 CPAMQLDGVVPNAVTLASLLSACASL----------CY------------------MYAK 405

Query: 381 CGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
           C +++ S Q+F + + +  V W  L+SG   +    EA+ LF  M    VE +  T  ++
Sbjct: 406 CNAVSYSFQVFAKTSKKRTVPWNALLSGLIHNELAREAVGLFKSMLIEEVEANHATFNSV 465

Query: 441 LSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKP 500
           + A      +K+   L + +++   I+  I      +D+  K G ++ A K+   +P K 
Sbjct: 466 IPAYAILADLKQVMNLHSYLVRSGFIS-KIAVITGLIDMYSKCGSLDYAHKIFDEIPNKE 524

Query: 501 STRIL-SSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLSMVCSESG 550
              I+ S L++   +HG  E A +L +Q++ +  +P N   +T +   CS  G
Sbjct: 525 KDIIVWSVLIAGYGMHGHGETAVLLFNQMVHSGMQP-NEITFTSVLHACSHRG 576



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 158/318 (49%), Gaps = 21/318 (6%)

Query: 242 AELRDLRNGKAIHGYAYCCGF----DFDH---HLSAALMHMYCECTEALHPARIIFERTK 294
           A  R L   K +HG+    G     +F H   HL  A+ + +C C      AR +F+   
Sbjct: 90  AATRSLNKTKILHGHTITSGLLHSPNFIHLPSHL--AVSYAFCGCVPL---ARKLFDDLS 144

Query: 295 VKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE-RIEPNSVTLLAILSSCTRQSFLSHGL 353
              + +W++II+ Y   G   +A+++F  M    +  P+  T   ++ +C+  S L+ G+
Sbjct: 145 DPSLFLWNAIIKMYVDKGFHFDALRVFDSMICSGKFWPDKYTFPLVIKACSVMSMLNVGV 204

Query: 354 GVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHG 413
            +H   + +G + ++ + N+L+ MY  CG +  + Q+FN M  R  VSW T+ISG+  +G
Sbjct: 205 LIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTMISGWFQNG 264

Query: 414 YGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAE--TLFNNVMKEKKIALAIE 471
             EEAL +F  M ++ VEPD+ T+++ L +C   G +KE E     + ++++  +   IE
Sbjct: 265 RPEEALAVFNSMMDARVEPDSATIVSALPSC---GYLKELELGIKVHKLVQKNHLQEKIE 321

Query: 472 HYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEML--AHQLI 529
                VD+  + G I++A  V +    K      +S+++   ++G  + A  L  A QL 
Sbjct: 322 VRNALVDMYSRCGGIDEASLVFAETKEK-DVITWTSMINGYIMNGNAKSALALCPAMQLD 380

Query: 530 EAEPENAANYTLLSMVCS 547
              P      +LLS   S
Sbjct: 381 GVVPNAVTLASLLSACAS 398


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 170/545 (31%), Positives = 303/545 (55%), Gaps = 34/545 (6%)

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           NS+++ YAK    + A + F++M  RD +SWN +I   +Q+G    +L +  EM+  G  
Sbjct: 198 NSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVR 257

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
           L +      ++ C+++  L  G+Q+HA VI     ++  +V++AL++LY+KC  +  A R
Sbjct: 258 LDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLP-QIDPYVASALIELYAKCGSFKEAKR 316

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VF  +  RN VSWT +I G +  + +   ++LF  M+ E +   +  L  ++  C    D
Sbjct: 317 VFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMD 376

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L  G+ +H      G +    +S +L+ +Y +C + L  A  +F     +D+V W+S+I 
Sbjct: 377 LCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGD-LQNAEFVFSSMSERDIVSWTSMIT 435

Query: 307 GYSQSGDLSEA-------------------------------MKLFSRMRLER-IEPNSV 334
            YSQ G++ +A                               +K++S M  ++ + P+ V
Sbjct: 436 AYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWV 495

Query: 335 TLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEM 394
           T + +   C        G  +  + +KAGL  +VS+ NA + MYSKCG I+ + ++F+ +
Sbjct: 496 TYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLL 555

Query: 395 AARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAE 454
             +D VSW  +I+GY  HG G++A + F +M   G +PD I+ +A+LS C+H+GLV+E +
Sbjct: 556 NGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGK 615

Query: 455 TLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRI 514
             F+ + +   I+  +EH++C VDLLG++G + +A  ++  MPMKP+  +  +L+SAC+I
Sbjct: 616 LYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKI 675

Query: 515 HGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFS 574
           HG  E+AE+ A  + E +  ++ +Y LL+ + S++G    + +V ++MR KG+ K+ G+S
Sbjct: 676 HGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYS 735

Query: 575 RIENE 579
            +E E
Sbjct: 736 WMEVE 740



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 123/530 (23%), Positives = 237/530 (44%), Gaps = 51/530 (9%)

Query: 64  VISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ--------NGFYVRSL- 114
           +  N +++ YAK      A +LFD MP RD  SWN++++  ++             R L 
Sbjct: 88  ITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGALGCRELA 147

Query: 115 -EMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLD 173
            ++    +   F    ++   ++ +  + G ++   ++ + +        ++F   ++L 
Sbjct: 148 PQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQI-----ERPTIFCRNSMLA 202

Query: 174 LYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVT 233
            Y+K +    A+  FE M  R+ VSW  MI+    S      + L   M R+GV+    T
Sbjct: 203 GYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTT 262

Query: 234 LTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERT 293
            T  L ACA L  L  GK +H          D ++++AL+ +Y +C  +   A+ +F   
Sbjct: 263 YTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCG-SFKEAKRVFNSL 321

Query: 294 KVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGL 353
           + ++ V W+ +I G  Q    S++++LF++MR E +  +   L  ++S C  +  L  G 
Sbjct: 322 QDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGR 381

Query: 354 GVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYG--- 410
            +H   +K+G N  + + N+L+++Y+KCG + ++  +F+ M+ RD VSWT++I+ Y    
Sbjct: 382 QLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIG 441

Query: 411 ----------------------------FHGYGEEALQLFLEM-QESGVEPDAITVLAIL 441
                                        HG  E+ L+++  M  +  V PD +T + + 
Sbjct: 442 NIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLF 501

Query: 442 SACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPS 501
             C   G  K  + +  + +K   I L +      + +  K G+I +A K+   +  K  
Sbjct: 502 RGCADIGANKLGDQIIGHTVKAGLI-LNVSVANAAITMYSKCGRISEAQKLFDLLNGKDV 560

Query: 502 TRILSSLVSACRIHGR-LEVAEMLAHQLIEAEPENAANYTLLSMVCSESG 550
               +++++    HG   + A+     L +    +  +Y  +   CS SG
Sbjct: 561 VS-WNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSG 609



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 112/436 (25%), Positives = 205/436 (47%), Gaps = 37/436 (8%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           E+H  G+  ++    S + ACA   +   +G QLH   ++S    DP ++++LI +YAK 
Sbjct: 250 EMHRKGVRLDSTTYTSSLTACARLFS-LGWGKQLHAKVIRSLPQIDPYVASALIELYAKC 308

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
              + A ++F+ +  R+++SW  +I    Q   + +S+E+F +M      +    LA +I
Sbjct: 309 GSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLI 368

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH---------------- 180
           S C    +L LGRQ+H+L +  G    ++ VS +L+ LY+KC                  
Sbjct: 369 SGCFNRMDLCLGRQLHSLCLKSG-HNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDI 427

Query: 181 --W-------------LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM-QR 224
             W             + A   F+ M  RN ++W AM+   I     + G+ ++ AM  +
Sbjct: 428 VSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQ 487

Query: 225 EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
           + V P  VT   +   CA++   + G  I G+    G   +  ++ A + MY +C   + 
Sbjct: 488 KDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGR-IS 546

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
            A+ +F+    KDVV W+++I GYSQ G   +A K F  M  +  +P+ ++ +A+LS C+
Sbjct: 547 EAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCS 606

Query: 345 RQSFLSHG-LGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS-W 402
               +  G L         G++  +   + ++++  + G +T +  + ++M  +     W
Sbjct: 607 HSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVW 666

Query: 403 TTLISGYGFHGYGEEA 418
             L+S    HG  E A
Sbjct: 667 GALLSACKIHGNDELA 682



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 132/318 (41%), Gaps = 50/318 (15%)

Query: 229 PTRVT--LTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           P  VT  L   L +C     L   +A+HG     G      L   L+H Y  C       
Sbjct: 16  PHAVTQALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDAR 75

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
           R++    K  +V+  + ++ GY++ G LS+A +LF RM   R +  S   L   +S    
Sbjct: 76  RLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRM--PRRDVASWNTLMSDTSRPAG 133

Query: 347 SFLSHGLGVHCYIMKAGL-------NF--DVSIGNALMNMYSKCGSITSSHQIFN----- 392
           S++S G  + C  +   L       +F  D  +  AL++M+ +CG +  + ++F+     
Sbjct: 134 SWMSCG-ALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERP 192

Query: 393 --------------------------EMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
                                     +MA RD VSW  +I+     G   EAL L +EM 
Sbjct: 193 TIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMH 252

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSG 484
             GV  D+ T  + L+AC     +   + L   V++       I+ Y  +  ++L  K G
Sbjct: 253 RKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLP---QIDPYVASALIELYAKCG 309

Query: 485 KIEDACKVVSTMPMKPST 502
             ++A +V +++  + S 
Sbjct: 310 SFKEAKRVFNSLQDRNSV 327


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 170/545 (31%), Positives = 303/545 (55%), Gaps = 34/545 (6%)

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           NS+++ YAK    + A + F++M  RD +SWN +I   +Q+G    +L +  EM+  G  
Sbjct: 208 NSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVR 267

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
           L +      ++ C+++  L  G+Q+HA VI     ++  +V++AL++LY+KC  +  A R
Sbjct: 268 LDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLP-QIDPYVASALIELYAKCGSFKEAKR 326

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VF  +  RN VSWT +I G +  + +   ++LF  M+ E +   +  L  ++  C    D
Sbjct: 327 VFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMD 386

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L  G+ +H      G +    +S +L+ +Y +C + L  A  +F     +D+V W+S+I 
Sbjct: 387 LCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGD-LQNAEFVFSSMSERDIVSWTSMIT 445

Query: 307 GYSQSGDLSEA-------------------------------MKLFSRMRLER-IEPNSV 334
            YSQ G++ +A                               +K++S M  ++ + P+ V
Sbjct: 446 AYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWV 505

Query: 335 TLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEM 394
           T + +   C        G  +  + +KAGL  +VS+ NA + MYSKCG I+ + ++F+ +
Sbjct: 506 TYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLL 565

Query: 395 AARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAE 454
             +D VSW  +I+GY  HG G++A + F +M   G +PD I+ +A+LS C+H+GLV+E +
Sbjct: 566 NGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGK 625

Query: 455 TLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRI 514
             F+ + +   I+  +EH++C VDLLG++G + +A  ++  MPMKP+  +  +L+SAC+I
Sbjct: 626 LYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKI 685

Query: 515 HGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFS 574
           HG  E+AE+ A  + E +  ++ +Y LL+ + S++G    + +V ++MR KG+ K+ G+S
Sbjct: 686 HGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYS 745

Query: 575 RIENE 579
            +E E
Sbjct: 746 WMEVE 750



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 137/552 (24%), Positives = 241/552 (43%), Gaps = 69/552 (12%)

Query: 64  VISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC 123
           +  N +++ YAK      A +LFD MP RD  SWN++++ + Q   ++  LE F  M+  
Sbjct: 72  ITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRS 131

Query: 124 GFVL-KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL 182
           G  L  A     ++  C  +G  EL  Q+  L      F     V TAL+D++ +C +  
Sbjct: 132 GDSLPNAFTFCCVMKSCGALGCRELAPQLLGL-FWKFDFWGDPDVETALVDMFVRCGYVD 190

Query: 183 IALRVFEQ-------------------------------MVIRNEVSWTAMISGCIDSQN 211
            A R+F Q                               M  R+ VSW  MI+    S  
Sbjct: 191 FASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGR 250

Query: 212 YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAA 271
               + L   M R+GV+    T T  L ACA L  L  GK +H          D ++++A
Sbjct: 251 VREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASA 310

Query: 272 LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP 331
           L+ +Y +C  +   A+ +F   + ++ V W+ +I G  Q    S++++LF++MR E +  
Sbjct: 311 LIELYAKCG-SFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAI 369

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIF 391
           +   L  ++S C  +  L  G  +H   +K+G N  + + N+L+++Y+KCG + ++  +F
Sbjct: 370 DQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVF 429

Query: 392 NEMAARDFVSWTTLISGYG-------------------------------FHGYGEEALQ 420
           + M+ RD VSWT++I+ Y                                 HG  E+ L+
Sbjct: 430 SSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLK 489

Query: 421 LFLEM-QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479
           ++  M  +  V PD +T + +   C   G  K  + +  + +K   I L +      + +
Sbjct: 490 MYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLI-LNVSVANAAITM 548

Query: 480 LGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGR-LEVAEMLAHQLIEAEPENAAN 538
             K G+I +A K+   +  K      +++++    HG   + A+     L +    +  +
Sbjct: 549 YSKCGRISEAQKLFDLLNGKDVVS-WNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYIS 607

Query: 539 YTLLSMVCSESG 550
           Y  +   CS SG
Sbjct: 608 YVAVLSGCSHSG 619



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 116/436 (26%), Positives = 209/436 (47%), Gaps = 37/436 (8%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           E+H  G+  ++    S + ACA   +   +G QLH   ++S    DP ++++LI +YAK 
Sbjct: 260 EMHRKGVRLDSTTYTSSLTACARLFS-LGWGKQLHAKVIRSLPQIDPYVASALIELYAKC 318

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
              + A ++F+ +  R+++SW  +I    Q   + +S+E+F +M      +    LA +I
Sbjct: 319 GSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLI 378

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
           S C    +L LGRQ+H+L +  G    ++ VS +L+ LY+KC     A  VF  M  R+ 
Sbjct: 379 SGCFNRMDLCLGRQLHSLCLKSG-HNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDI 437

Query: 197 VSWTAMISG---------------CIDSQNYDT----------------GIDLFRAM-QR 224
           VSWT+MI+                 +D++N  T                G+ ++ AM  +
Sbjct: 438 VSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQ 497

Query: 225 EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
           + V P  VT   +   CA++   + G  I G+    G   +  ++ A + MY +C   + 
Sbjct: 498 KDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGR-IS 556

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
            A+ +F+    KDVV W+++I GYSQ G   +A K F  M  +  +P+ ++ +A+LS C+
Sbjct: 557 EAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCS 616

Query: 345 RQSFLSHG-LGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS-W 402
               +  G L         G++  +   + ++++  + G +T +  + ++M  +     W
Sbjct: 617 HSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVW 676

Query: 403 TTLISGYGFHGYGEEA 418
             L+S    HG  E A
Sbjct: 677 GALLSACKIHGNDELA 692



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 140/314 (44%), Gaps = 31/314 (9%)

Query: 162 ELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRA 221
           E +V     +++ Y+K      A  +F++M  R+  SW  ++SG   ++ +  G++ F +
Sbjct: 68  EPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVS 127

Query: 222 MQREGVK-PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECT 280
           M R G   P   T   V+ +C  L        + G  +   F  D  +  AL+ M+  C 
Sbjct: 128 MHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCG 187

Query: 281 EALHPARII------------------------------FERTKVKDVVIWSSIIRGYSQ 310
                +R+                               FE    +DVV W+ +I   SQ
Sbjct: 188 YVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQ 247

Query: 311 SGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSI 370
           SG + EA+ L   M  + +  +S T  + L++C R   L  G  +H  ++++    D  +
Sbjct: 248 SGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYV 307

Query: 371 GNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV 430
            +AL+ +Y+KCGS   + ++FN +  R+ VSWT LI G   +    ++++LF +M+   +
Sbjct: 308 ASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELM 367

Query: 431 EPDAITVLAILSAC 444
             D   +  ++S C
Sbjct: 368 AIDQFALATLISGC 381



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 73/334 (21%), Positives = 126/334 (37%), Gaps = 68/334 (20%)

Query: 234 LTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERT 293
           L   L +C     L   +A+HG     G      L   L+H Y  C       R++    
Sbjct: 7   LADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADI 66

Query: 294 KVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR--------------------LERIE--- 330
           K  +V+  + ++ GY++ G LS+A +LF RM                     L+ +E   
Sbjct: 67  KEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFV 126

Query: 331 ---------PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
                    PN+ T   ++ SC           +     K     D  +  AL++M+ +C
Sbjct: 127 SMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRC 186

Query: 382 GSITSSHQIFN-------------------------------EMAARDFVSWTTLISGYG 410
           G +  + ++F+                               +MA RD VSW  +I+   
Sbjct: 187 GYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALS 246

Query: 411 FHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAI 470
             G   EAL L +EM   GV  D+ T  + L+AC     +   + L   V++       I
Sbjct: 247 QSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLP---QI 303

Query: 471 EHY--ACYVDLLGKSGKIEDACKVVSTMPMKPST 502
           + Y  +  ++L  K G  ++A +V +++  + S 
Sbjct: 304 DPYVASALIELYAKCGSFKEAKRVFNSLQDRNSV 337


>gi|449451649|ref|XP_004143574.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Cucumis sativus]
 gi|449516723|ref|XP_004165396.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 184/571 (32%), Positives = 298/571 (52%), Gaps = 6/571 (1%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           + L L+ Q L  +GL  N    P + KACA   +H      +H   +KS   +D  +  +
Sbjct: 35  KALALFHQ-LKLNGLQPNNFTFPFLSKACA-KLSHLTNSQIIHTHVVKSPFYSDIYVQTA 92

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           ++ MY K  K + AY LFD+MP R+  SWN++I  F+Q G   R   +F  M L G    
Sbjct: 93  MVDMYVKCGKVDDAYNLFDKMPVRNIASWNAMIIGFSQIGSLDRVFNLFMGMRLVGTRPD 152

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
           A  + G+         L   + +HA+ I  G  +    VS   +  YSKC    +A  VF
Sbjct: 153 AATVIGLTRAVISAKSLRFLKAVHAIGIETG-LDADTSVSNTWIAAYSKCGELQLAKMVF 211

Query: 189 E--QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
              Q   R+ VSW ++I+       Y   +  ++ +  +G KP   T+  +L +C +   
Sbjct: 212 HGIQKTARSSVSWNSLIACYAHFGKYVDAVKSYKGLLCDGFKPDASTIISLLSSCQQPEA 271

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L  G  IHG+ +  G D D  L   L+ MY  C + +  A I+F+   ++  V W+++I 
Sbjct: 272 LIYGFLIHGHGFQLGCDSDISLINTLISMYSRCGD-ISSATILFDGMSIRTCVSWTAMIS 330

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           GYS+ G + +A+ LF+ M     +P+ VT+L+++S C +   L  G  +  Y     L  
Sbjct: 331 GYSEVGRVDDALVLFNAMEETGEKPDIVTVLSLISGCGKTGALGLGHWIDNYASLHELKK 390

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           DV + NAL++MY+KCGS+  + +IF  +  R  VSWT +I+    +G   EAL LF  + 
Sbjct: 391 DVVVCNALIDMYAKCGSLNDAREIFYSLPNRTVVSWTAMIAACALNGEFREALDLFSLLS 450

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
           ESG+EP+ IT LA+L AC H G +++    F  + +   I   ++HY+C +DLLG+ GK+
Sbjct: 451 ESGIEPNNITFLAVLQACCHGGYLEKGRECFMMMTERYGINPGLDHYSCMIDLLGRKGKL 510

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546
            +A +V+  MPMKP   I  +L+ AC+IH  +E+ E ++  L E +P  A ++  ++ + 
Sbjct: 511 IEALEVIQDMPMKPDEGIWGALLGACKIHNNMEIGEYVSRYLFELQPRVAVSFVEMANIY 570

Query: 547 SESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +  G W     + + MR+  + KS G S ++
Sbjct: 571 ASVGRWDEVAAMRKTMRSNQMRKSPGKSVVQ 601



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 130/250 (52%), Gaps = 3/250 (1%)

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258
           W + I G ++  N    + LF  ++  G++P   T   +  ACA+L  L N + IH +  
Sbjct: 20  WNSSIRGAVNQGNASKALALFHQLKLNGLQPNNFTFPFLSKACAKLSHLTNSQIIHTHVV 79

Query: 259 CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAM 318
              F  D ++  A++ MY +C + +  A  +F++  V+++  W+++I G+SQ G L    
Sbjct: 80  KSPFYSDIYVQTAMVDMYVKCGK-VDDAYNLFDKMPVRNIASWNAMIIGFSQIGSLDRVF 138

Query: 319 KLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMY 378
            LF  MRL    P++ T++ +  +      L     VH   ++ GL+ D S+ N  +  Y
Sbjct: 139 NLFMGMRLVGTRPDAATVIGLTRAVISAKSLRFLKAVHAIGIETGLDADTSVSNTWIAAY 198

Query: 379 SKCGSITSSHQIFN--EMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAIT 436
           SKCG +  +  +F+  +  AR  VSW +LI+ Y   G   +A++ +  +   G +PDA T
Sbjct: 199 SKCGELQLAKMVFHGIQKTARSSVSWNSLIACYAHFGKYVDAVKSYKGLLCDGFKPDAST 258

Query: 437 VLAILSACNH 446
           ++++LS+C  
Sbjct: 259 IISLLSSCQQ 268



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 123/260 (47%), Gaps = 43/260 (16%)

Query: 293 TKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHG 352
           +K+  +  W+S IRG    G+ S+A+ LF +++L  ++PN+ T   +  +C + S L++ 
Sbjct: 12  SKLSTLTWWNSSIRGAVNQGNASKALALFHQLKLNGLQPNNFTFPFLSKACAKLSHLTNS 71

Query: 353 LGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFH 412
             +H +++K+    D+ +  A+++MY KCG +  ++ +F++M  R+  SW  +I G+   
Sbjct: 72  QIIHTHVVKSPFYSDIYVQTAMVDMYVKCGKVDDAYNLFDKMPVRNIASWNAMIIGFSQI 131

Query: 413 GYGEEALQLFLEMQESGVEPDAITVLAI-------------------------------- 440
           G  +    LF+ M+  G  PDA TV+ +                                
Sbjct: 132 GSLDRVFNLFMGMRLVGTRPDAATVIGLTRAVISAKSLRFLKAVHAIGIETGLDADTSVS 191

Query: 441 ---LSACNHAGLVKEAETLFNNVMKEKKIALAIEHY-ACYVDLLGKSGKIEDACKVVSTM 496
              ++A +  G ++ A+ +F+ + K  + +++     ACY       GK  DA K    +
Sbjct: 192 NTWIAAYSKCGELQLAKMVFHGIQKTARSSVSWNSLIACYAHF----GKYVDAVKSYKGL 247

Query: 497 ---PMKPSTRILSSLVSACR 513
                KP    + SL+S+C+
Sbjct: 248 LCDGFKPDASTIISLLSSCQ 267


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 170/545 (31%), Positives = 303/545 (55%), Gaps = 34/545 (6%)

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           NS+++ YAK    + A + F++M  RD +SWN +I   +Q+G    +L +  EM+  G  
Sbjct: 208 NSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVR 267

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
           L +      ++ C+++  L  G+Q+HA VI     ++  +V++AL++LY+KC  +  A R
Sbjct: 268 LDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLP-QIDPYVASALIELYAKCGSFKEAKR 326

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VF  +  RN VSWT +I G +  + +   ++LF  M+ E +   +  L  ++  C    D
Sbjct: 327 VFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMD 386

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L  G+ +H      G +    +S +L+ +Y +C + L  A  +F     +D+V W+S+I 
Sbjct: 387 LCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGD-LQNAEFVFSSMSERDIVSWTSMIT 445

Query: 307 GYSQSGDLSEA-------------------------------MKLFSRMRLER-IEPNSV 334
            YSQ G++ +A                               +K++S M  ++ + P+ V
Sbjct: 446 AYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWV 505

Query: 335 TLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEM 394
           T + +   C        G  +  + +KAGL  +VS+ NA + MYSKCG I+ + ++F+ +
Sbjct: 506 TYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLL 565

Query: 395 AARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAE 454
             +D VSW  +I+GY  HG G++A + F +M   G +PD I+ +A+LS C+H+GLV+E +
Sbjct: 566 NGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGK 625

Query: 455 TLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRI 514
             F+ + +   I+  +EH++C VDLLG++G + +A  ++  MPMKP+  +  +L+SAC+I
Sbjct: 626 LYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKI 685

Query: 515 HGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFS 574
           HG  E+AE+ A  + E +  ++ +Y LL+ + S++G    + +V ++MR KG+ K+ G+S
Sbjct: 686 HGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYS 745

Query: 575 RIENE 579
            +E E
Sbjct: 746 WMEVE 750



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 137/552 (24%), Positives = 241/552 (43%), Gaps = 69/552 (12%)

Query: 64  VISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC 123
           +  N +++ YAK      A +LFD MP RD  SWN++++ + Q   ++  LE F  M+  
Sbjct: 72  ITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRS 131

Query: 124 GFVL-KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL 182
           G  L  A     ++  C  +G  EL  Q+  L      F     V TAL+D++ +C +  
Sbjct: 132 GDSLPNAFTFCCVMKSCGALGCRELAPQLLGL-FWKFDFWGDPDVETALVDMFVRCGYVD 190

Query: 183 IALRVFEQ-------------------------------MVIRNEVSWTAMISGCIDSQN 211
            A R+F Q                               M  R+ VSW  MI+    S  
Sbjct: 191 FASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGR 250

Query: 212 YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAA 271
               + L   M R+GV+    T T  L ACA L  L  GK +H          D ++++A
Sbjct: 251 VREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASA 310

Query: 272 LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP 331
           L+ +Y +C  +   A+ +F   + ++ V W+ +I G  Q    S++++LF++MR E +  
Sbjct: 311 LIELYAKCG-SFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAI 369

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIF 391
           +   L  ++S C  +  L  G  +H   +K+G N  + + N+L+++Y+KCG + ++  +F
Sbjct: 370 DQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVF 429

Query: 392 NEMAARDFVSWTTLISGYG-------------------------------FHGYGEEALQ 420
           + M+ RD VSWT++I+ Y                                 HG  E+ L+
Sbjct: 430 SSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLK 489

Query: 421 LFLEM-QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479
           ++  M  +  V PD +T + +   C   G  K  + +  + +K   I L +      + +
Sbjct: 490 MYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLI-LNVSVANAAITM 548

Query: 480 LGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGR-LEVAEMLAHQLIEAEPENAAN 538
             K G+I +A K+   +  K      +++++    HG   + A+     L +    +  +
Sbjct: 549 YSKCGRISEAQKLFDLLNGKDVVS-WNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYIS 607

Query: 539 YTLLSMVCSESG 550
           Y  +   CS SG
Sbjct: 608 YVAVLSGCSHSG 619



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 112/436 (25%), Positives = 205/436 (47%), Gaps = 37/436 (8%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           E+H  G+  ++    S + ACA   +   +G QLH   ++S    DP ++++LI +YAK 
Sbjct: 260 EMHRKGVRLDSTTYTSSLTACARLFS-LGWGKQLHAKVIRSLPQIDPYVASALIELYAKC 318

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
              + A ++F+ +  R+++SW  +I    Q   + +S+E+F +M      +    LA +I
Sbjct: 319 GSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLI 378

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH---------------- 180
           S C    +L LGRQ+H+L +  G    ++ VS +L+ LY+KC                  
Sbjct: 379 SGCFNRMDLCLGRQLHSLCLKSG-HNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDI 437

Query: 181 --W-------------LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM-QR 224
             W             + A   F+ M  RN ++W AM+   I     + G+ ++ AM  +
Sbjct: 438 VSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQ 497

Query: 225 EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
           + V P  VT   +   CA++   + G  I G+    G   +  ++ A + MY +C   + 
Sbjct: 498 KDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGR-IS 556

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
            A+ +F+    KDVV W+++I GYSQ G   +A K F  M  +  +P+ ++ +A+LS C+
Sbjct: 557 EAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCS 616

Query: 345 RQSFLSHG-LGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS-W 402
               +  G L         G++  +   + ++++  + G +T +  + ++M  +     W
Sbjct: 617 HSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVW 676

Query: 403 TTLISGYGFHGYGEEA 418
             L+S    HG  E A
Sbjct: 677 GALLSACKIHGNDELA 692



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 140/314 (44%), Gaps = 31/314 (9%)

Query: 162 ELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRA 221
           E +V     +++ Y+K      A  +F++M  R+  SW  ++SG   ++ +  G++ F +
Sbjct: 68  EPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVS 127

Query: 222 MQREGVK-PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECT 280
           M R G   P   T   V+ +C  L        + G  +   F  D  +  AL+ M+  C 
Sbjct: 128 MHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCG 187

Query: 281 EALHPARII------------------------------FERTKVKDVVIWSSIIRGYSQ 310
                +R+                               FE    +DVV W+ +I   SQ
Sbjct: 188 YVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQ 247

Query: 311 SGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSI 370
           SG + EA+ L   M  + +  +S T  + L++C R   L  G  +H  ++++    D  +
Sbjct: 248 SGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYV 307

Query: 371 GNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV 430
            +AL+ +Y+KCGS   + ++FN +  R+ VSWT LI G   +    ++++LF +M+   +
Sbjct: 308 ASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELM 367

Query: 431 EPDAITVLAILSAC 444
             D   +  ++S C
Sbjct: 368 AIDQFALATLISGC 381



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 73/334 (21%), Positives = 126/334 (37%), Gaps = 68/334 (20%)

Query: 234 LTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERT 293
           L   L +C     L   +A+HG     G      L   L+H Y  C       R++    
Sbjct: 7   LADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADI 66

Query: 294 KVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR--------------------LERIE--- 330
           K  +V+  + ++ GY++ G LS+A +LF RM                     L+ +E   
Sbjct: 67  KEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFV 126

Query: 331 ---------PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
                    PN+ T   ++ SC           +     K     D  +  AL++M+ +C
Sbjct: 127 SMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRC 186

Query: 382 GSITSSHQIFN-------------------------------EMAARDFVSWTTLISGYG 410
           G +  + ++F+                               +MA RD VSW  +I+   
Sbjct: 187 GYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALS 246

Query: 411 FHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAI 470
             G   EAL L +EM   GV  D+ T  + L+AC     +   + L   V++       I
Sbjct: 247 QSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLP---QI 303

Query: 471 EHY--ACYVDLLGKSGKIEDACKVVSTMPMKPST 502
           + Y  +  ++L  K G  ++A +V +++  + S 
Sbjct: 304 DPYVASALIELYAKCGSFKEAKRVFNSLQDRNSV 337


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 179/592 (30%), Positives = 307/592 (51%), Gaps = 66/592 (11%)

Query: 50  LHCTALKSGSDADPV-ISNSLISMYAKFSKPESAYQLFDEMP------------------ 90
           +HC  LK+   A P  + N L++ YAK  +   A ++FDEMP                  
Sbjct: 34  VHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSR 93

Query: 91  -------------YRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAEL-LAGII 136
                         RD +S+N++I  F+  G   RS++++R +     V    + L+ +I
Sbjct: 94  LVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMI 153

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM----- 191
            + S + +  LG  +H  V+  G F    FV + L+D+Y+K      A RVF++M     
Sbjct: 154 MVASALSDRALGHSVHCQVLRLG-FGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTV 212

Query: 192 --------------------------VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
                                     V R+ ++WT M++G   +      +D+FR M+ E
Sbjct: 213 VMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAE 272

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
           GV   + T   +L AC  L  L  GK IH Y     ++ +  + +AL+ MY +C  ++  
Sbjct: 273 GVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKC-RSIRL 331

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           A  +F R   ++++ W+++I GY Q+    EA++ FS M+++ I+P+  TL +++SSC  
Sbjct: 332 AEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCAN 391

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
            + L  G   HC  + +GL   +++ NAL+ +Y KCGSI  +H++F+EM+  D VSWT L
Sbjct: 392 LASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTAL 451

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           ++GY   G  +E + LF +M  +G++PD +T + +LSAC+ AGLV++    F+++ K+  
Sbjct: 452 VTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHG 511

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
           I    +HY C +DL  +SG+ ++A + +  MP  P     ++L+S+CR+ G +E+ +  A
Sbjct: 512 IVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAA 571

Query: 526 HQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
             L+E +P+N A+Y LL  + +  G W     + R MR + + K  G S I+
Sbjct: 572 ENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIK 623



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 127/444 (28%), Positives = 208/444 (46%), Gaps = 42/444 (9%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           +++ LY+  L    +      L ++I   A A + +  G  +HC  L+ G  A   + + 
Sbjct: 128 RSVQLYRALLREESVRPTRITLSAMIMV-ASALSDRALGHSVHCQVLRLGFGAYAFVGSP 186

Query: 69  LISMYAKFSKPESAYQLFDEMPY-------------------------------RDTISW 97
           L+ MYAK      A ++F EM                                 RD+I+W
Sbjct: 187 LVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITW 246

Query: 98  NSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIV 157
            +++   TQNG  + +L++FR M   G  +       I++ C  +  LE G+QIHA  I 
Sbjct: 247 TTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAY-IT 305

Query: 158 DGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGID 217
              +E +VFV +AL+D+YSKC    +A  VF +M  RN +SWTAMI G   +   +  + 
Sbjct: 306 RTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVR 365

Query: 218 LFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYC 277
            F  MQ +G+KP   TL  V+ +CA L  L  G   H  A   G      +S AL+ +Y 
Sbjct: 366 AFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYG 425

Query: 278 ECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLL 337
           +C  ++  A  +F+     D V W++++ GY+Q G   E + LF +M    ++P+ VT +
Sbjct: 426 KCG-SIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFI 484

Query: 338 AILSSCTRQSFLSHGLGVHCYIMKA-GLNFDVSIGN---ALMNMYSKCGSITSSHQIFNE 393
            +LS+C+R   +  G      + K  G+   V I +    ++++YS+ G    + +   +
Sbjct: 485 GVLSACSRAGLVEKGCDYFDSMQKDHGI---VPIDDHYTCMIDLYSRSGRFKEAEEFIKQ 541

Query: 394 MA-ARDFVSWTTLISGYGFHGYGE 416
           M  + D   W TL+S     G  E
Sbjct: 542 MPHSPDAFGWATLLSSCRLRGNME 565



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 101/207 (48%), Gaps = 16/207 (7%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           E+   G+  +   L SVI +CA   + +  G Q HC AL SG      +SN+L+++Y K 
Sbjct: 369 EMQMDGIKPDDFTLGSVISSCANLASLEE-GAQFHCLALVSGLMRYITVSNALVTLYGKC 427

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
              E A++LFDEM + D +SW +++  + Q G    ++++F +M   G         G++
Sbjct: 428 GSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVL 487

Query: 137 SLCSQIGELELG-------RQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
           S CS+ G +E G       ++ H +V +D  +       T ++DLYS+   +  A    +
Sbjct: 488 SACSRAGLVEKGCDYFDSMQKDHGIVPIDDHY-------TCMIDLYSRSGRFKEAEEFIK 540

Query: 190 QMV-IRNEVSWTAMISGCIDSQNYDTG 215
           QM    +   W  ++S C    N + G
Sbjct: 541 QMPHSPDAFGWATLLSSCRLRGNMEIG 567


>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
          Length = 742

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 179/592 (30%), Positives = 307/592 (51%), Gaps = 66/592 (11%)

Query: 50  LHCTALKSGSDADPV-ISNSLISMYAKFSKPESAYQLFDEMP------------------ 90
           +HC  LK+   A P  + N L++ YAK  +   A ++FDEMP                  
Sbjct: 34  VHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSR 93

Query: 91  -------------YRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAEL-LAGII 136
                         RD +S+N++I  F+  G   RS++++R +     V    + L+ +I
Sbjct: 94  LVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMI 153

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM----- 191
            + S + +  LG  +H  V+  G F    FV + L+D+Y+K      A RVF++M     
Sbjct: 154 MVASALSDRALGHSVHCQVLRLG-FGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTV 212

Query: 192 --------------------------VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
                                     V R+ ++WT M++G   +      +D+FR M+ E
Sbjct: 213 VMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAE 272

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
           GV   + T   +L AC  L  L  GK IH Y     ++ +  + +AL+ MY +C  ++  
Sbjct: 273 GVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKC-RSIRL 331

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           A  +F R   ++++ W+++I GY Q+    EA++ FS M+++ I+P+  TL +++SSC  
Sbjct: 332 AEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCAN 391

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
            + L  G   HC  + +GL   +++ NAL+ +Y KCGSI  +H++F+EM+  D VSWT L
Sbjct: 392 LASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTAL 451

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           ++GY   G  +E + LF +M  +G++PD +T + +LSAC+ AGLV++    F+++ K+  
Sbjct: 452 VTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHG 511

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
           I    +HY C +DL  +SG+ ++A + +  MP  P     ++L+S+CR+ G +E+ +  A
Sbjct: 512 IVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAA 571

Query: 526 HQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
             L+E +P+N A+Y LL  + +  G W     + R MR + + K  G S I+
Sbjct: 572 ENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIK 623



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 127/444 (28%), Positives = 208/444 (46%), Gaps = 42/444 (9%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           +++ LY+  L    +      L ++I   A A + +  G  +HC  L+ G  A   + + 
Sbjct: 128 RSVQLYRALLREESVRPTRITLSAMI-MVASALSDRALGHSVHCQVLRLGFGAYAFVGSP 186

Query: 69  LISMYAKFSKPESAYQLFDEMPY-------------------------------RDTISW 97
           L+ MYAK      A ++F EM                                 RD+I+W
Sbjct: 187 LVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITW 246

Query: 98  NSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIV 157
            +++   TQNG  + +L++FR M   G  +       I++ C  +  LE G+QIHA  I 
Sbjct: 247 TTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAY-IT 305

Query: 158 DGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGID 217
              +E +VFV +AL+D+YSKC    +A  VF +M  RN +SWTAMI G   +   +  + 
Sbjct: 306 RTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVR 365

Query: 218 LFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYC 277
            F  MQ +G+KP   TL  V+ +CA L  L  G   H  A   G      +S AL+ +Y 
Sbjct: 366 AFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYG 425

Query: 278 ECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLL 337
           +C  ++  A  +F+     D V W++++ GY+Q G   E + LF +M    ++P+ VT +
Sbjct: 426 KCG-SIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFI 484

Query: 338 AILSSCTRQSFLSHGLGVHCYIMKA-GLNFDVSIGN---ALMNMYSKCGSITSSHQIFNE 393
            +LS+C+R   +  G      + K  G+   V I +    ++++YS+ G    + +   +
Sbjct: 485 GVLSACSRAGLVEKGCDYFDSMQKDHGI---VPIDDHYTCMIDLYSRSGRFKEAEEFIKQ 541

Query: 394 MA-ARDFVSWTTLISGYGFHGYGE 416
           M  + D   W TL+S     G  E
Sbjct: 542 MPHSPDAFGWATLLSSCRLRGNME 565



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 101/207 (48%), Gaps = 16/207 (7%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           E+   G+  +   L SVI +CA   + +  G Q HC AL SG      +SN+L+++Y K 
Sbjct: 369 EMQMDGIKPDDFTLGSVISSCANLASLEE-GAQFHCLALVSGLMRYITVSNALVTLYGKC 427

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
              E A++LFDEM + D +SW +++  + Q G    ++++F +M   G         G++
Sbjct: 428 GSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVL 487

Query: 137 SLCSQIGELELG-------RQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
           S CS+ G +E G       ++ H +V +D  +       T ++DLYS+   +  A    +
Sbjct: 488 SACSRAGLVEKGCDYFDSMQKDHGIVPIDDHY-------TCMIDLYSRSGRFKEAEEFIK 540

Query: 190 QMV-IRNEVSWTAMISGCIDSQNYDTG 215
           QM    +   W  ++S C    N + G
Sbjct: 541 QMPHSPDAFGWATLLSSCRLRGNMEIG 567


>gi|255559826|ref|XP_002520932.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539898|gb|EEF41477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 757

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 180/558 (32%), Positives = 316/558 (56%), Gaps = 9/558 (1%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           +G   N + L  +++AC   +  Q  GLQLH   ++SG  A   + NS + MYA     +
Sbjct: 159 AGFEPNISTLVLLVQACRSLRAKQE-GLQLHGYLIQSGLWASWSVQNSFLCMYADVDM-D 216

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL-KAELLAGIISLC 139
            A  LFDEMP +D ISW+++I  + Q       L++F++M     +     +L  ++  C
Sbjct: 217 CARILFDEMPEKDVISWSAMIGGYVQYLEDQIGLQIFQKMLSTSRITPDGVILVSVLKAC 276

Query: 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSW 199
           +    + +GR +H L I  G  +  +FV  +L+D+YSKC     A  VF +M  RN VSW
Sbjct: 277 ANSVNITMGRLVHGLTICRG-LDSDLFVKNSLIDMYSKCKDAGSAFEVFSEMPRRNNVSW 335

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
            +++SG I ++ Y   + L  +M+ EG++   VTL   L  C       + KA+H     
Sbjct: 336 NSLLSGLILNKKYSEALLLVYSMRTEGIEADEVTLVNCLQICKYFAHPYHCKAVHCATIR 395

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
            G + +  +  +L+  Y +C   +  A  +F RT+ +DVV+WS++I G++  G   EA+ 
Sbjct: 396 RGCESNEIVLNSLIDAYAKCN-LIELAWEVFSRTRRRDVVLWSTMIAGFAHCGKPDEAIA 454

Query: 320 LFSRMRLERIE-PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMY 378
           +F +M  E IE PN+VT++ +L +C+  + L   +  H   ++ GL  +V++G A+++MY
Sbjct: 455 VFQKMN-EGIEVPNAVTIINLLQACSVSAELKRSMWAHGAAIRRGLAAEVAVGTAIVDMY 513

Query: 379 SKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
           SKCG I +S + FN++  ++ ++W+T+I+ YG +G   EAL L  +M+   ++P+A+T L
Sbjct: 514 SKCGEIEASRKAFNQIPQKNIITWSTMIAAYGMNGLAHEALALLAQMKSHEIKPNALTYL 573

Query: 439 AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP- 497
           ++L+AC+H GLV+   ++F +++++  +    EHY+C VD+L ++GK++DA +++  MP 
Sbjct: 574 SVLTACSHGGLVEMGLSVFKSMIQDHGVDPEFEHYSCMVDMLSRAGKLDDAMELIRMMPE 633

Query: 498 -MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAE 556
             +    +  +L+SACR +    + E   +Q++E EP N A Y L S + +  G W  A 
Sbjct: 634 TFRAGASVWGALLSACRTYRSSTLGEKAVYQVLELEPLNLAGYLLASSMYASDGLWDNAA 693

Query: 557 EVWRVMRAKGLSKSYGFS 574
            +  + R +G+    G+S
Sbjct: 694 RMKLLARERGVRAVAGYS 711



 Score =  211 bits (537), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 150/527 (28%), Positives = 259/527 (49%), Gaps = 9/527 (1%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           +  + P V+KAC+Y       G  LH   +K+  D+   I NS+++ Y K  + ++A  +
Sbjct: 64  DVTLFPPVLKACSYLSYID--GKCLHACLIKTAFDSFTSIGNSILNFYIKCGELDTAVSV 121

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL 145
           FD M  RD++SWN +I+     G  V  L  F    + GF      L  ++  C  +   
Sbjct: 122 FDSMRSRDSVSWNVLIHGCLDYGALVEGLWQFINARVAGFEPNISTLVLLVQACRSLRAK 181

Query: 146 ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISG 205
           + G Q+H  +I  G +  S  V  + L +Y+       A  +F++M  ++ +SW+AMI G
Sbjct: 182 QEGLQLHGYLIQSGLWA-SWSVQNSFLCMYADVDM-DCARILFDEMPEKDVISWSAMIGG 239

Query: 206 CIDSQNYDTGIDLFRAM-QREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDF 264
            +       G+ +F+ M     + P  V L  VL ACA   ++  G+ +HG   C G D 
Sbjct: 240 YVQYLEDQIGLQIFQKMLSTSRITPDGVILVSVLKACANSVNITMGRLVHGLTICRGLDS 299

Query: 265 DHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM 324
           D  +  +L+ MY +C +A   A  +F     ++ V W+S++ G   +   SEA+ L   M
Sbjct: 300 DLFVKNSLIDMYSKCKDA-GSAFEVFSEMPRRNNVSWNSLLSGLILNKKYSEALLLVYSM 358

Query: 325 RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSI 384
           R E IE + VTL+  L  C   +   H   VHC  ++ G   +  + N+L++ Y+KC  I
Sbjct: 359 RTEGIEADEVTLVNCLQICKYFAHPYHCKAVHCATIRRGCESNEIVLNSLIDAYAKCNLI 418

Query: 385 TSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
             + ++F+    RD V W+T+I+G+   G  +EA+ +F +M E    P+A+T++ +L AC
Sbjct: 419 ELAWEVFSRTRRRDVVLWSTMIAGFAHCGKPDEAIAVFQKMNEGIEVPNAVTIINLLQAC 478

Query: 445 NHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRI 504
           + +  +K +       ++ + +A  +      VD+  K G+IE + K  + +P K +   
Sbjct: 479 SVSAELKRSMWAHGAAIR-RGLAAEVAVGTAIVDMYSKCGEIEASRKAFNQIPQK-NIIT 536

Query: 505 LSSLVSACRIHGRLEVAEMLAHQLIEAE-PENAANYTLLSMVCSESG 550
            S++++A  ++G    A  L  Q+   E   NA  Y  +   CS  G
Sbjct: 537 WSTMIAAYGMNGLAHEALALLAQMKSHEIKPNALTYLSVLTACSHGG 583



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 105/356 (29%), Positives = 182/356 (51%), Gaps = 8/356 (2%)

Query: 95  ISWNSIINCFTQNGFYVRSLEMFREMYLCGF---VLKAELLAGIISLCSQIGELELGRQI 151
           +SW   I   + N  +   +  + E+   G    +L   L   ++  CS +  ++ G+ +
Sbjct: 28  LSWTLRIKELSSNEKWHEVISQYYEITNAGISHHLLDVTLFPPVLKACSYLSYID-GKCL 86

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQN 211
           HA +I   +F+    +  ++L+ Y KC     A+ VF+ M  R+ VSW  +I GC+D   
Sbjct: 87  HACLI-KTAFDSFTSIGNSILNFYIKCGELDTAVSVFDSMRSRDSVSWNVLIHGCLDYGA 145

Query: 212 YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAA 271
              G+  F   +  G +P   TL +++ AC  LR  + G  +HGY    G      +  +
Sbjct: 146 LVEGLWQFINARVAGFEPNISTLVLLVQACRSLRAKQEGLQLHGYLIQSGLWASWSVQNS 205

Query: 272 LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM-RLERIE 330
            + MY +    +  ARI+F+    KDV+ WS++I GY Q  +    +++F +M    RI 
Sbjct: 206 FLCMYADVD--MDCARILFDEMPEKDVISWSAMIGGYVQYLEDQIGLQIFQKMLSTSRIT 263

Query: 331 PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQI 390
           P+ V L+++L +C     ++ G  VH   +  GL+ D+ + N+L++MYSKC    S+ ++
Sbjct: 264 PDGVILVSVLKACANSVNITMGRLVHGLTICRGLDSDLFVKNSLIDMYSKCKDAGSAFEV 323

Query: 391 FNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH 446
           F+EM  R+ VSW +L+SG   +    EAL L   M+  G+E D +T++  L  C +
Sbjct: 324 FSEMPRRNNVSWNSLLSGLILNKKYSEALLLVYSMRTEGIEADEVTLVNCLQICKY 379



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 121/424 (28%), Positives = 212/424 (50%), Gaps = 12/424 (2%)

Query: 11  LHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLI 70
           L ++++ L  S +  +  IL SV+KACA +  +   G  +H   +  G D+D  + NSLI
Sbjct: 250 LQIFQKMLSTSRITPDGVILVSVLKACANS-VNITMGRLVHGLTICRGLDSDLFVKNSLI 308

Query: 71  SMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE 130
            MY+K     SA+++F EMP R+ +SWNS+++    N  Y  +L +   M   G      
Sbjct: 309 DMYSKCKDAGSAFEVFSEMPRRNNVSWNSLLSGLILNKKYSEALLLVYSMRTEGIEADEV 368

Query: 131 LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQ 190
            L   + +C         + +H   I  G  E +  V  +L+D Y+KC+   +A  VF +
Sbjct: 369 TLVNCLQICKYFAHPYHCKAVHCATIRRGC-ESNEIVLNSLIDAYAKCNLIELAWEVFSR 427

Query: 191 MVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK-PTRVTLTIVLLACAELRDLRN 249
              R+ V W+ MI+G       D  I +F+ M  EG++ P  VT+  +L AC+   +L+ 
Sbjct: 428 TRRRDVVLWSTMIAGFAHCGKPDEAIAVFQKMN-EGIEVPNAVTIINLLQACSVSAELKR 486

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
               HG A   G   +  +  A++ MY +C E +  +R  F +   K+++ WS++I  Y 
Sbjct: 487 SMWAHGAAIRRGLAAEVAVGTAIVDMYSKCGE-IEASRKAFNQIPQKNIITWSTMIAAYG 545

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV-HCYIMKAGLNFDV 368
            +G   EA+ L ++M+   I+PN++T L++L++C+    +  GL V    I   G++ + 
Sbjct: 546 MNGLAHEALALLAQMKSHEIKPNALTYLSVLTACSHGGLVEMGLSVFKSMIQDHGVDPEF 605

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAA--RDFVS-WTTLISG---YGFHGYGEEALQLF 422
              + +++M S+ G +  + ++   M    R   S W  L+S    Y     GE+A+   
Sbjct: 606 EHYSCMVDMLSRAGKLDDAMELIRMMPETFRAGASVWGALLSACRTYRSSTLGEKAVYQV 665

Query: 423 LEMQ 426
           LE++
Sbjct: 666 LELE 669


>gi|147804706|emb|CAN64870.1| hypothetical protein VITISV_041329 [Vitis vinifera]
          Length = 629

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 170/491 (34%), Positives = 279/491 (56%), Gaps = 11/491 (2%)

Query: 93  DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIH 152
           +  ++N+II+ F  NGF     E +++M   G +         I  C  + E+   ++IH
Sbjct: 103 NVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKACLDVLEI---KKIH 159

Query: 153 ALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNY 212
            L+   G  EL VF+ +AL++ Y K      A   FE++ IR+ V W AM++G      +
Sbjct: 160 GLLFKFG-LELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQF 218

Query: 213 DTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAAL 272
           +  ++ FR M  E V P+R T+T  L   A + DL NG+ IHG+A   G+D    +S +L
Sbjct: 219 EMVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSL 278

Query: 273 MHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPN 332
           + MY +C + +  A  IFE  + KD+  W+SI+  + Q GD    ++L  RM    I+P+
Sbjct: 279 IDMYGKC-KCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPD 337

Query: 333 SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD------VSIGNALMNMYSKCGSITS 386
            VT+  +L +C+  + L HG  +H Y++ +GL  D      V + NA+++MY+KCGS+  
Sbjct: 338 LVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRD 397

Query: 387 SHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH 446
           +H +F  M+ +D  SW  +I GYG HGYG EAL++F  M E  ++PD +T + +LSAC+H
Sbjct: 398 AHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSH 457

Query: 447 AGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILS 506
           AG V +       +  +  +A  IEHY C +D+LG++G++++A ++  TMP++ +  +  
Sbjct: 458 AGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWR 517

Query: 507 SLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566
           +L++ACR+H    +AE+ A ++ E EPE+  +Y L+S V    G +    EV   MR + 
Sbjct: 518 ALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQN 577

Query: 567 LSKSYGFSRIE 577
           + K+ G S IE
Sbjct: 578 VRKTPGCSWIE 588



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 150/504 (29%), Positives = 240/504 (47%), Gaps = 54/504 (10%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           ++  F E+    Y Q++   G+  +    P  IKAC      +    ++H    K G + 
Sbjct: 115 ITNGFPEEGFEFY-QKMRNEGVMPDKFTFPCAIKACLDVLEIK----KIHGLLFKFGLEL 169

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D  I ++L++ Y KF   E A   F+E+P RD + WN+++N + Q G +   LE FR M 
Sbjct: 170 DVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMN 229

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
               V     + G +S+ + +G+L  GR IH   +  G ++  V VS +L+D+Y KC   
Sbjct: 230 DESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAMKMG-YDSGVAVSNSLIDMYGKCKCI 288

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             AL +FE M  ++  SW +++S      ++D  + L   M   G++P  VT+T VL AC
Sbjct: 289 EDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPAC 348

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHH------LSAALMHMYCECTEALHPARIIFERTKV 295
           + L  L +G+ IHGY    G   D        L  A++ MY +C  ++  A ++FER   
Sbjct: 349 SHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCG-SMRDAHLVFERMSN 407

Query: 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV 355
           KDV  W+ +I GY   G  +EA+++FSRM   +++P+ VT + +LS+C+   F+S G   
Sbjct: 408 KDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGR-- 465

Query: 356 HCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYG 415
                           N L+ M SK               A     +T +I   G  G  
Sbjct: 466 ----------------NFLVQMKSKYD------------VAPTIEHYTCVIDMLGRAGQL 497

Query: 416 EEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC 475
           +EA +L L M    +E + +   A+L+AC    L K A  +   V  ++   L  EH   
Sbjct: 498 DEAYELALTMP---IEANPVVWRALLAACR---LHKHA--VLAEVAAQRVFELEPEHCGS 549

Query: 476 YV---DLLGKSGKIEDACKVVSTM 496
           YV   ++ G  G+ E+  +V  TM
Sbjct: 550 YVLMSNVYGAVGRYEEVLEVRHTM 573


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 168/497 (33%), Positives = 282/497 (56%), Gaps = 4/497 (0%)

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAEL-LAGIISLCS 140
           AY +F      D ++WNS++  F  +    R+L+ + EM      +        ++  C+
Sbjct: 31  AYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCA 90

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
            + E ++G+ +H  V V       +++ T LL++Y+ C     A  +FE+M  RN+V WT
Sbjct: 91  LLLEFKVGKVLHGQV-VKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWT 149

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
           +MISG + +   +  + L++ M+ +G  P  VT+  ++ ACAEL+DL  G  +H +    
Sbjct: 150 SMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREM 209

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
                  L +AL++MY +C + L  AR +F++   KDV  WS++I GY ++   +EA++L
Sbjct: 210 DMKICAVLGSALVNMYAKCGD-LKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQL 268

Query: 321 FSRMRL-ERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           F  +     + PN VT+LA++S+C +   L  G  VH YI +      VS+ N+L++M+S
Sbjct: 269 FREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFS 328

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           KCG I ++ +IF+ M+ +D +SW ++++G   HG G EAL  F  MQ + ++PD IT + 
Sbjct: 329 KCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIG 388

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           +L+AC+HAGLV+E + LF  +     + L  EHY C VDLL ++G + +A + +  MP++
Sbjct: 389 VLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQ 448

Query: 500 PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVW 559
           P   I  S++ ACR++  LE+ E  A  L+E EP N   Y LLS + +    W   ++V 
Sbjct: 449 PDGAIWGSMLGACRVYNNLELGEEAARCLLELEPTNDGVYILLSNIYARRKMWNEVKKVR 508

Query: 560 RVMRAKGLSKSYGFSRI 576
            +M  KG+ K+ G S +
Sbjct: 509 ELMNEKGIQKTPGCSSV 525



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 108/444 (24%), Positives = 223/444 (50%), Gaps = 14/444 (3%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V+ +   + L  Y + L  S    +    PS++K CA     +  G  LH   +K    +
Sbjct: 54  VNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFK-VGKVLHGQVVKYMLHS 112

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D  I  +L++MYA     +SA  LF+ M +R+ + W S+I+ + +N     +L ++++M 
Sbjct: 113 DLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKME 172

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
             GF      +A ++S C+++ +L +G ++H+  I +   ++   + +AL+++Y+KC   
Sbjct: 173 EDGFSPDEVTMATLVSACAELKDLGVGMKLHSH-IREMDMKICAVLGSALVNMYAKCGDL 231

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQ-REGVKPTRVTLTIVLLA 240
             A +VF+Q+  ++  +W+A+I G + +      + LFR +     ++P  VT+  V+ A
Sbjct: 232 KTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISA 291

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
           CA+L DL  G+ +H Y           L+ +L+ M+ +C + +  A+ IF+    KD++ 
Sbjct: 292 CAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGD-IDAAKRIFDSMSYKDLIS 350

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           W+S++ G +  G   EA+  F  M+   ++P+ +T + +L++C+    +  G  +  Y +
Sbjct: 351 WNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLF-YEI 409

Query: 361 KA--GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISG---YGFHGY 414
           +A  G+         ++++  + G +  + +    M  + D   W +++     Y     
Sbjct: 410 EALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLEL 469

Query: 415 GEEALQLFLEMQESGVEPDAITVL 438
           GEEA +  LE++ +    D + +L
Sbjct: 470 GEEAARCLLELEPTN---DGVYIL 490


>gi|296082168|emb|CBI21173.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 177/530 (33%), Positives = 290/530 (54%), Gaps = 5/530 (0%)

Query: 51  HCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFY 110
           HC A+KSG+ A    +N++IS YAK  +   A ++F E   RD +SWN++I  F   G +
Sbjct: 22  HCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNF 81

Query: 111 VRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTA 170
             +LE  + M   GF +       I+   + +G +E+G+Q+H++++  G +E +VF  +A
Sbjct: 82  ETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMG-YEGNVFAGSA 140

Query: 171 LLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPT 230
           LLD+Y+KC     A  VF+ + IRN V+W A+ISG     +  T   L   M+ EGV+  
Sbjct: 141 LLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEID 200

Query: 231 RVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIF 290
             T   +L    +    +    +H      G   D  +  A++  Y EC  ++  A  +F
Sbjct: 201 DGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECG-SIEDAERVF 259

Query: 291 E---RTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQS 347
           +    T+  D V W+SI+ G+SQSG   +A+K F  MR + +  +     A+L SC+  +
Sbjct: 260 DGAIETRDLDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLA 319

Query: 348 FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLIS 407
            L  G  VH  ++K+G   +  + ++L+ MYSKCG I  + + F+       ++W +LI 
Sbjct: 320 TLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATPKDSSIAWNSLIF 379

Query: 408 GYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIA 467
           GY  HG G+ AL LF  M++  V+ D IT +A+L+AC+H GLV+E  +   ++  +  I 
Sbjct: 380 GYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIP 439

Query: 468 LAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQ 527
             +EHYAC +DLLG++G++++A  ++  MP +P   +  +L+ ACR  G +E+A  +A  
Sbjct: 440 PRMEHYACMIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTLLGACRTCGDIELASQVASH 499

Query: 528 LIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           L+E EPE    Y LLS +      W     + R+M+ +G+ K  G+S IE
Sbjct: 500 LLELEPEEHCTYVLLSSMFGHLRRWNEKASIKRLMKERGVKKVPGWSWIE 549



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 113/457 (24%), Positives = 211/457 (46%), Gaps = 48/457 (10%)

Query: 24  YSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAY 83
           YS  +IL  V  AC     +   G Q+H   +K G + +    ++L+ MYAK  + E A+
Sbjct: 101 YSFGSILKGV--ACV---GYVEVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVEDAF 155

Query: 84  QLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIG 143
           ++F  +  R++++WN++I+ + Q G    +  +   M L G  +     A +++L     
Sbjct: 156 EVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLDDPD 215

Query: 144 ELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE---VSWT 200
             +L  Q+HA ++  G       V  A++  YS+C     A RVF+  +   +   VSW 
Sbjct: 216 LHKLTTQVHAKIVKHG-LASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLDHVSWN 274

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
           ++++G   S   +  +  F  M+ + V       + VL +C++L  L+ G+ +H      
Sbjct: 275 SILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKS 334

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
           GF+ +  ++++L+ MY +C   +  AR  F+ T     + W+S+I GY+Q G    A+ L
Sbjct: 335 GFEPNGFVASSLIFMYSKCG-VIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDL 393

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
           F  M+  R++ + +T +A+L++C+           H  +++ G +F              
Sbjct: 394 FFLMKDRRVKLDHITFVAVLTACS-----------HIGLVEEGWSF-------------- 428

Query: 381 CGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
             S+ S + I   M       +  +I   G  G  +EA  L   M     EPDA+    +
Sbjct: 429 LKSMESDYGIPPRME-----HYACMIDLLGRAGRLDEAKALIEAMP---FEPDAMVWKTL 480

Query: 441 LSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYV 477
           L AC   G ++ A  + +++++     L  E +  YV
Sbjct: 481 LGACRTCGDIELASQVASHLLE-----LEPEEHCTYV 512


>gi|224122892|ref|XP_002318942.1| predicted protein [Populus trichocarpa]
 gi|222857318|gb|EEE94865.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 182/570 (31%), Positives = 303/570 (53%), Gaps = 7/570 (1%)

Query: 10  TLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSL 69
            L L+++ +  + +  +    P V  A A          Q+H   +K+ S  D  + +SL
Sbjct: 95  VLELFRRMI-ANNILPDAHTFPGVFTAAALNLGCNFDARQVHVLGIKTASIDDVFVGSSL 153

Query: 70  ISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKA 129
           ++ Y K      A +LFD MP R+ +SW ++I+ +        +L +F  M L    L  
Sbjct: 154 VNFYCKVGCVFEARKLFDRMPERNLVSWTTMISGYASKQMAKEALGVFGLMRLVEGNLNE 213

Query: 130 ELLAGIIS--LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
            +   ++S  +C +   ++ G+Q+H +V+ +G  E  V V  AL+ +Y+KC +   +L +
Sbjct: 214 FVFTSVLSALVCPEF--VDSGKQVHCVVVKNGVLEF-VSVLNALVTMYAKCGNLNYSLML 270

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           FE    +N ++W+A+I+G   + +    + LF  M   G  P+  TL  VL AC+++  +
Sbjct: 271 FEMCSDKNAITWSALITGYSQAGDSHKALKLFSKMHYAGFVPSEFTLVGVLKACSDVAAI 330

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
             GK  HGY    G++   + + AL+ MY +       AR  F+     D+V+W+SII G
Sbjct: 331 EEGKQTHGYLLKSGYETQIYTATALVDMYAKFGFT-GDARKGFDFLLEPDLVLWTSIIAG 389

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
           Y Q+G   EA+ ++ RM++ +I PN +T+ ++L +C+  + L  G  +H   +K GL  +
Sbjct: 390 YVQNGKNEEALSMYGRMQMRKILPNELTMASVLKACSNLAALEQGKQIHARTIKYGLGPE 449

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
           +SI +AL  MY+KCGS+     IF  M  RD VSW  +ISG   +G+G EAL+LF EM+ 
Sbjct: 450 LSIRSALSTMYAKCGSLEEGVLIFRRMLQRDIVSWNAMISGLSQNGHGREALELFEEMRL 509

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487
            G +PD IT + +LSAC+H G+VK     FN +  E  +   +EHYAC VD+L ++GK+ 
Sbjct: 510 EGTKPDHITFVTVLSACSHMGIVKRGWAYFNMMFDEFCLVPRVEHYACMVDVLSRAGKLN 569

Query: 488 DACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCS 547
           +A + + +  +     +   L+ ACR H   E+      +L+E     ++ Y LLS + +
Sbjct: 570 EAKEFIESAIIDHGMCLWRILLPACRNHCNYELGAYAGEKLMELGSRESSAYVLLSSIYT 629

Query: 548 ESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
             G       V R+M+ +G+ K  G S IE
Sbjct: 630 AMGRLADVVRVRRMMKVRGVRKETGCSWIE 659



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 143/499 (28%), Positives = 251/499 (50%), Gaps = 26/499 (5%)

Query: 65  ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRS--LEMFREMYL 122
           ++N+LI  YAK      A  +F+ + +++ +S+N +I+  + NG    +  LE+FR M  
Sbjct: 45  LANNLIKFYAKCGHLHGAKLVFENLKHKNVVSYNCLIHGLSHNGSKGSNFVLELFRRMIA 104

Query: 123 CGFVLKAELLAGIISLCSQIGELELG-----RQIHALVIVDGSFELSVFVSTALLDLYSK 177
              +  A    G+ +  +    L LG     RQ+H L I   S +  VFV ++L++ Y K
Sbjct: 105 NNILPDAHTFPGVFTAAA----LNLGCNFDARQVHVLGIKTASID-DVFVGSSLVNFYCK 159

Query: 178 CHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIV 237
                 A ++F++M  RN VSWT MISG    Q     + +F  M+           T V
Sbjct: 160 VGCVFEARKLFDRMPERNLVSWTTMISGYASKQMAKEALGVFGLMRLVEGNLNEFVFTSV 219

Query: 238 L--LACAELRDLRNGKAIHGYAYCCG-FDFDHHLSAALMHMYCECTEALHPARIIFERTK 294
           L  L C E  D  +GK +H      G  +F   L+ AL+ MY +C   L+ + ++FE   
Sbjct: 220 LSALVCPEFVD--SGKQVHCVVVKNGVLEFVSVLN-ALVTMYAKCGN-LNYSLMLFEMCS 275

Query: 295 VKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG 354
            K+ + WS++I GYSQ+GD  +A+KLFS+M      P+  TL+ +L +C+  + +  G  
Sbjct: 276 DKNAITWSALITGYSQAGDSHKALKLFSKMHYAGFVPSEFTLVGVLKACSDVAAIEEGKQ 335

Query: 355 VHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGY 414
            H Y++K+G    +    AL++MY+K G    + + F+ +   D V WT++I+GY  +G 
Sbjct: 336 THGYLLKSGYETQIYTATALVDMYAKFGFTGDARKGFDFLLEPDLVLWTSIIAGYVQNGK 395

Query: 415 GEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYA 474
            EEAL ++  MQ   + P+ +T+ ++L AC++   +++ + +    +K   +   +   +
Sbjct: 396 NEEALSMYGRMQMRKILPNELTMASVLKACSNLAALEQGKQIHARTIK-YGLGPELSIRS 454

Query: 475 CYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSAC--RIHGRLEVAEMLAHQLIEA- 531
               +  K G +E+   +   M ++      ++++S      HGR E  E+     +E  
Sbjct: 455 ALSTMYAKCGSLEEGVLIFRRM-LQRDIVSWNAMISGLSQNGHGR-EALELFEEMRLEGT 512

Query: 532 EPENAANYTLLSMVCSESG 550
           +P++    T+LS  CS  G
Sbjct: 513 KPDHITFVTVLS-ACSHMG 530



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 111/405 (27%), Positives = 200/405 (49%), Gaps = 26/405 (6%)

Query: 145 LELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMIS 204
           L+ G+ +HA +I         +++  L+  Y+KC H   A  VFE +  +N VS+  +I 
Sbjct: 23  LKKGQILHAHIIKIPYLSSCNYLANNLIKFYAKCGHLHGAKLVFENLKHKNVVSYNCLIH 82

Query: 205 GCIDSQNYDTG----IDLFRAMQREGVKPTRVTLTIVLLACA-ELRDLRNGKAIHGYAYC 259
           G   S N   G    ++LFR M    + P   T   V  A A  L    + + +H     
Sbjct: 83  GL--SHNGSKGSNFVLELFRRMIANNILPDAHTFPGVFTAAALNLGCNFDARQVHVLGIK 140

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
                D  + ++L++ YC+    +  AR +F+R   +++V W+++I GY+      EA+ 
Sbjct: 141 TASIDDVFVGSSLVNFYCK-VGCVFEARKLFDRMPERNLVSWTTMISGYASKQMAKEALG 199

Query: 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           +F  MRL     N     ++LS+     F+  G  VHC ++K G+   VS+ NAL+ MY+
Sbjct: 200 VFGLMRLVEGNLNEFVFTSVLSALVCPEFVDSGKQVHCVVVKNGVLEFVSVLNALVTMYA 259

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           KCG++  S  +F   + ++ ++W+ LI+GY   G   +AL+LF +M  +G  P   T++ 
Sbjct: 260 KCGNLNYSLMLFEMCSDKNAITWSALITGYSQAGDSHKALKLFSKMHYAGFVPSEFTLVG 319

Query: 440 ILSACNHAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
           +L AC+    ++E +     ++K   E +I  A       VD+  K G   DA K    +
Sbjct: 320 VLKACSDVAAIEEGKQTHGYLLKSGYETQIYTA----TALVDMYAKFGFTGDARKGFDFL 375

Query: 497 PMKPSTRILSSLVS----------ACRIHGRLEVAEMLAHQLIEA 531
            ++P   + +S+++          A  ++GR+++ ++L ++L  A
Sbjct: 376 -LEPDLVLWTSIIAGYVQNGKNEEALSMYGRMQMRKILPNELTMA 419


>gi|357118484|ref|XP_003560984.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial-like [Brachypodium distachyon]
          Length = 678

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 171/531 (32%), Positives = 297/531 (55%), Gaps = 3/531 (0%)

Query: 46  FGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT 105
           +G +LHC  +K+G   D  + N+L+ MYAK    ++A ++FD +P R+ +SW S+++   
Sbjct: 146 YGRRLHCDVVKAGG-GDLFVMNNLVDMYAKGGDLKNARKVFDRIPDRNVVSWTSMLSGCL 204

Query: 106 QNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSV 165
           QNG     L +F EM     +     +A ++  C+ +G L  GR IH  V+  G    + 
Sbjct: 205 QNGLAKEGLVLFNEMRQESILPSEYTMASVLMACTMLGSLHQGRLIHGSVMKHGLVS-NH 263

Query: 166 FVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
           F++ A+LD+Y KC     A +VF+++   + V WT MI G   + +    + LF   +  
Sbjct: 264 FITAAMLDMYVKCGEAEDARQVFDELSFVDLVLWTTMIVGYTQNGSPLDALLLFVDDKFM 323

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
            + P  VT+  VL A A+LR+L  G++IHG +   G   +  +  AL+ MY +C +AL  
Sbjct: 324 RIVPNSVTIATVLSASAQLRNLSLGRSIHGISVKLGAVENDVVMNALVDMYAKC-KALSD 382

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           A+ IF R   KDVV W+S+I GY+++   S+A+ LFS MR++   P++++++  LS+C  
Sbjct: 383 AKGIFGRVLNKDVVTWNSLIAGYAENDMGSDALMLFSHMRVQGSLPDAISVVNALSACVC 442

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
              L  G   H Y +K     ++ +  AL+N+Y+KC  + S+ ++F+EM  R+ V+W  +
Sbjct: 443 LGDLLIGKCFHTYAVKHAFMSNIYVNTALLNLYNKCADLPSAQRVFSEMNDRNTVTWGAM 502

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           I GYG  G    ++ LF EM +  ++P+     +ILS C+H G+V   +  F ++     
Sbjct: 503 IGGYGMQGDSAGSIDLFNEMLKDNIQPNEAVFTSILSTCSHTGMVTVGKKCFESMAHYFN 562

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
           I  +++HYAC VD+L ++G +E+A + +  MPM+  T I  + +  C++H RLE AE   
Sbjct: 563 ITPSMKHYACMVDVLARAGNLEEALEFIQKMPMQADTSIWQAFLHGCKLHSRLEFAEEAV 622

Query: 526 HQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
           ++++   P+      ++S + +  G W  +  + ++M+ +GL K  G S +
Sbjct: 623 NRMMVLHPDTPDFCVMMSNLYTSYGRWDKSLAIRKLMKERGLVKLPGCSSV 673



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 213/378 (56%), Gaps = 5/378 (1%)

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           L+S YA      SA ++ DE P+ D  ++   +      G +  ++ + R+M       +
Sbjct: 66  LLSCYAALGDLASARRVLDETPHPDAYTYKVALGWHAAAGRHAEAVAVHRDMRRRCPAEQ 125

Query: 129 AELLAGIISLCSQI--GELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
            +++   ++L + +   +   GR++H  V+  G  +L  FV   L+D+Y+K      A +
Sbjct: 126 EDVVVLSLALKAAVRSADFGYGRRLHCDVVKAGGGDL--FVMNNLVDMYAKGGDLKNARK 183

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VF+++  RN VSWT+M+SGC+ +     G+ LF  M++E + P+  T+  VL+AC  L  
Sbjct: 184 VFDRIPDRNVVSWTSMLSGCLQNGLAKEGLVLFNEMRQESILPSEYTMASVLMACTMLGS 243

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L  G+ IHG     G   +H ++AA++ MY +C EA   AR +F+     D+V+W+++I 
Sbjct: 244 LHQGRLIHGSVMKHGLVSNHFITAAMLDMYVKCGEA-EDARQVFDELSFVDLVLWTTMIV 302

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           GY+Q+G   +A+ LF   +  RI PNSVT+  +LS+  +   LS G  +H   +K G   
Sbjct: 303 GYTQNGSPLDALLLFVDDKFMRIVPNSVTIATVLSASAQLRNLSLGRSIHGISVKLGAVE 362

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           +  + NAL++MY+KC +++ +  IF  +  +D V+W +LI+GY  +  G +AL LF  M+
Sbjct: 363 NDVVMNALVDMYAKCKALSDAKGIFGRVLNKDVVTWNSLIAGYAENDMGSDALMLFSHMR 422

Query: 427 ESGVEPDAITVLAILSAC 444
             G  PDAI+V+  LSAC
Sbjct: 423 VQGSLPDAISVVNALSAC 440



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 112/425 (26%), Positives = 216/425 (50%), Gaps = 14/425 (3%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
            E+    +  +   + SV+ AC    +  H G  +H + +K G  ++  I+ +++ MY K
Sbjct: 217 NEMRQESILPSEYTMASVLMACTMLGS-LHQGRLIHGSVMKHGLVSNHFITAAMLDMYVK 275

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
             + E A Q+FDE+ + D + W ++I  +TQNG  + +L +F +      V  +  +A +
Sbjct: 276 CGEAEDARQVFDELSFVDLVLWTTMIVGYTQNGSPLDALLLFVDDKFMRIVPNSVTIATV 335

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           +S  +Q+  L LGR IH + +  G+ E  V V  AL+D+Y+KC     A  +F +++ ++
Sbjct: 336 LSASAQLRNLSLGRSIHGISVKLGAVENDV-VMNALVDMYAKCKALSDAKGIFGRVLNKD 394

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
            V+W ++I+G  ++      + LF  M+ +G  P  +++   L AC  L DL  GK  H 
Sbjct: 395 VVTWNSLIAGYAENDMGSDALMLFSHMRVQGSLPDAISVVNALSACVCLGDLLIGKCFHT 454

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
           YA    F  + +++ AL+++Y +C + L  A+ +F     ++ V W ++I GY   GD +
Sbjct: 455 YAVKHAFMSNIYVNTALLNLYNKCAD-LPSAQRVFSEMNDRNTVTWGAMIGGYGMQGDSA 513

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCY-IMKAGLNFDVSIGN-- 372
            ++ LF+ M  + I+PN     +ILS+C+    ++  +G  C+  M    N   S+ +  
Sbjct: 514 GSIDLFNEMLKDNIQPNEAVFTSILSTCSHTGMVT--VGKKCFESMAHYFNITPSMKHYA 571

Query: 373 ALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFHG---YGEEALQLFLEMQES 428
            ++++ ++ G++  + +   +M  + D   W   + G   H    + EEA+   + +   
Sbjct: 572 CMVDVLARAGNLEEALEFIQKMPMQADTSIWQAFLHGCKLHSRLEFAEEAVNRMMVLHPD 631

Query: 429 GVEPD 433
              PD
Sbjct: 632 --TPD 634


>gi|108706064|gb|ABF93859.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|125584837|gb|EAZ25501.1| hypothetical protein OsJ_09324 [Oryza sativa Japonica Group]
          Length = 781

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 176/559 (31%), Positives = 303/559 (54%), Gaps = 6/559 (1%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
            G   +    P V+K CA        G   H   +K G + D    NSL++ YAK    E
Sbjct: 101 DGARPDRFTFPVVVKCCARLGGLDE-GRAAHGMVIKLGLEHDVYTCNSLVAFYAKLGLVE 159

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL--KAELLAGIISL 138
            A ++FD MP RD ++WN++++ +  NG    +L  F+EM+    V      ++A + + 
Sbjct: 160 DAERVFDGMPVRDIVTWNTMVDGYVSNGLGSLALACFQEMHDALEVQHDSVGIIAALAAC 219

Query: 139 CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
           C ++  ++ G++IH  VI  G  E  + V T+LLD+Y KC     A  VF  M +R  V+
Sbjct: 220 CLEVSSMQ-GKEIHGYVIRHG-LEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLRTVVT 277

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258
           W  MI G   ++  D   D F  M+ EG++   VT   +L ACA+      G+++HGY  
Sbjct: 278 WNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVV 337

Query: 259 CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAM 318
              F     L  AL+ MY +  + +  +  IF +   K +V W+++I  Y      +EA+
Sbjct: 338 RRQFLPHVVLETALLEMYGKVGK-VESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAI 396

Query: 319 KLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMY 378
            LF  +  + + P+  T+  ++ +      L H   +H YI+  G   +  I NA+++MY
Sbjct: 397 TLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMNAVLHMY 456

Query: 379 SKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
           ++ G + +S +IF++M ++D +SW T+I GY  HG G+ AL++F EM+ +G++P+  T +
Sbjct: 457 ARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFV 516

Query: 439 AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPM 498
           ++L+AC+ +GLV E    FN +++E  +   IEHY C  DLLG+ G + +  + + +MP+
Sbjct: 517 SVLTACSVSGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLREVLQFIESMPI 576

Query: 499 KPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEV 558
            P++R+  SL++A R    +++AE  A ++ + E +N   Y +LS + +++G W   E V
Sbjct: 577 DPTSRVWGSLLTASRNQNDIDIAEYAAERIFQLEHDNTGCYIVLSSMYADAGRWEDVERV 636

Query: 559 WRVMRAKGLSKSYGFSRIE 577
             +M+ KGL ++   S +E
Sbjct: 637 RLLMKEKGLRRTEPISLVE 655



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 154/300 (51%), Gaps = 5/300 (1%)

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           MI G  D+      +  +R M  +G +P R T  +V+  CA L  L  G+A HG     G
Sbjct: 78  MIRGFADAGLPAGALAAYRGMLEDGARPDRFTFPVVVKCCARLGGLDEGRAAHGMVIKLG 137

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
            + D +   +L+  Y +    +  A  +F+   V+D+V W++++ GY  +G  S A+  F
Sbjct: 138 LEHDVYTCNSLVAFYAKLG-LVEDAERVFDGMPVRDIVTWNTMVDGYVSNGLGSLALACF 196

Query: 322 SRMR--LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
             M   LE ++ +SV ++A L++C  +     G  +H Y+++ GL  D+ +G +L++MY 
Sbjct: 197 QEMHDALE-VQHDSVGIIAALAACCLEVSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYC 255

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           KCG +  +  +F  M  R  V+W  +I GY  +   +EA   F++M+  G++ + +T + 
Sbjct: 256 KCGEVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTAIN 315

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           +L+AC          ++   V++ + +   +   A  +++ GK GK+E + K+   +  K
Sbjct: 316 LLAACAQTESSLYGRSVHGYVVRRQFLPHVVLETA-LLEMYGKVGKVESSEKIFGKIANK 374



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 106/207 (51%), Gaps = 8/207 (3%)

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVH 356
           D  + + +IRG++ +G  + A+  +  M  +   P+  T   ++  C R   L  G   H
Sbjct: 71  DAFLHNVMIRGFADAGLPAGALAAYRGMLEDGARPDRFTFPVVVKCCARLGGLDEGRAAH 130

Query: 357 CYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGE 416
             ++K GL  DV   N+L+  Y+K G +  + ++F+ M  RD V+W T++ GY  +G G 
Sbjct: 131 GMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIVTWNTMVDGYVSNGLGS 190

Query: 417 EALQLFLEMQES-GVEPDAITVLAILSACNHAGLVKEAETLFNNVMK---EKKIALAIEH 472
            AL  F EM ++  V+ D++ ++A L+AC       + + +   V++   E+ I +    
Sbjct: 191 LALACFQEMHDALEVQHDSVGIIAALAACCLEVSSMQGKEIHGYVIRHGLEQDIKVG--- 247

Query: 473 YACYVDLLGKSGKIEDACKVVSTMPMK 499
               +D+  K G++  A  V +TMP++
Sbjct: 248 -TSLLDMYCKCGEVAYARSVFATMPLR 273


>gi|115485519|ref|NP_001067903.1| Os11g0482400 [Oryza sativa Japonica Group]
 gi|77550880|gb|ABA93677.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113645125|dbj|BAF28266.1| Os11g0482400 [Oryza sativa Japonica Group]
          Length = 770

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 173/526 (32%), Positives = 291/526 (55%), Gaps = 14/526 (2%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           +H    K+G+ AD  ++ SL++ Y + S    A +LFD MP R+ ++W +++  +T N  
Sbjct: 100 VHGHMAKTGASADMFVATSLVNAYMRCSAARDARRLFDGMPERNVVTWTALVTGYTLNSQ 159

Query: 110 YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVST 169
               LE+F EM   G       L   ++ C    +++LG+Q+H   I  G+  ++  +  
Sbjct: 160 PALGLEVFVEMLEMGRYPSHYTLGATLNACLASCDVDLGKQVHGYAIKYGAESITS-MGN 218

Query: 170 ALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCI-DSQNYDTGIDLFRAMQREGVK 228
           +L  LY+K      ALR F ++  +N ++WT MIS C  D +  + G+ LF  M  +GV 
Sbjct: 219 SLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAEDEECVELGMSLFIDMLMDGVM 278

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
           P   TLT V+  C    DL  GK +  +++  G + +  +  + M++Y    E     R+
Sbjct: 279 PNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRL 338

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLS-----------EAMKLFSRMRLERIEPNSVTLL 337
            FE+ +   ++ W+++I GY+Q  D +           +A+ +F  ++   ++P+  T  
Sbjct: 339 -FEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFS 397

Query: 338 AILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR 397
           +ILS C+    L  G  +H   +K+G   DV + +AL+NMY+KCG I  +++ F EM  R
Sbjct: 398 SILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTR 457

Query: 398 DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLF 457
            FV+WT++ISGY  HG  +EA+QLF EM+ +GV P+ IT +++LSAC++AGLV+EAE  F
Sbjct: 458 TFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYF 517

Query: 458 NNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGR 517
           + + KE  I   ++HY C +D+  + G++EDA   +     +P+  I SSLV+ CR HG 
Sbjct: 518 DMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGN 577

Query: 518 LEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMR 563
           +E+A   A +L+E +P+    Y LL  +   +  W     V ++M+
Sbjct: 578 MELAFYAADKLLELKPKGIETYILLLNMYISTERWQDVARVRKLMK 623



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 120/434 (27%), Positives = 213/434 (49%), Gaps = 24/434 (5%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           E+   G Y +   L + + AC  A      G Q+H  A+K G+++   + NSL S+YAK 
Sbjct: 169 EMLEMGRYPSHYTLGATLNAC-LASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKL 227

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVR-SLEMFREMYLCGFVLKAELLAGI 135
              +SA + F  +P ++ I+W ++I+   ++   V   + +F +M + G +     L  +
Sbjct: 228 GSLDSALRAFWRIPEKNVITWTTMISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSV 287

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           +SLC    +L LG+Q+ A     G  E ++ V  + + LY +      A+R+FEQM   +
Sbjct: 288 MSLCGTRLDLNLGKQVQAFSFKIGC-ETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDAS 346

Query: 196 EVSWTAMISG---CIDSQNYD--------TGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
            ++W AMISG    +DS   D          + +FR ++R  +KP   T + +L  C+ +
Sbjct: 347 IITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAM 406

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
             L  G+ IH      GF  D  +++AL++MY +C   +  A   F     +  V W+S+
Sbjct: 407 MALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCG-CIQDANKAFLEMPTRTFVTWTSM 465

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCY-IMKAG 363
           I GYSQ G   EA++LF  MRL  + PN +T +++LS+C+    +      H + +MK  
Sbjct: 466 ISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEE--AEHYFDMMKKE 523

Query: 364 LNFDVSIGN--ALMNMYSKCGSITSSHQIFNEMA-ARDFVSWTTLISGYGFHGYGEEAL- 419
              +  + +   +++M+ + G +  +           +   W++L++G   HG  E A  
Sbjct: 524 YCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFY 583

Query: 420 --QLFLEMQESGVE 431
                LE++  G+E
Sbjct: 584 AADKLLELKPKGIE 597



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 114/224 (50%), Gaps = 2/224 (0%)

Query: 222 MQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTE 281
           M  EG          +L  C E   L   +A+HG+    G   D  ++ +L++ Y  C+ 
Sbjct: 69  MLTEGKAVQSAMYVPLLHRCVETGSLGAARAVHGHMAKTGASADMFVATSLVNAYMRCSA 128

Query: 282 ALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILS 341
           A   AR +F+    ++VV W++++ GY+ +   +  +++F  M      P+  TL A L+
Sbjct: 129 A-RDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLN 187

Query: 342 SCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS 401
           +C     +  G  VH Y +K G     S+GN+L ++Y+K GS+ S+ + F  +  ++ ++
Sbjct: 188 ACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVIT 247

Query: 402 WTTLISGYGFHGYGEE-ALQLFLEMQESGVEPDAITVLAILSAC 444
           WTT+IS         E  + LF++M   GV P+  T+ +++S C
Sbjct: 248 WTTMISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLC 291



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 112/232 (48%), Gaps = 5/232 (2%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           Q L +++ +L  S +  +     S++  C+     +  G Q+H   +KSG  +D V++++
Sbjct: 376 QALTIFR-DLKRSVMKPDLFTFSSILSVCSAMMALEQ-GEQIHAQTIKSGFLSDVVVNSA 433

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           L++MY K    + A + F EMP R  ++W S+I+ ++Q+G    ++++F EM L G    
Sbjct: 434 LVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPN 493

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
                 ++S CS  G +E       ++  +   E  V     ++D++ +      A    
Sbjct: 494 EITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFI 553

Query: 189 EQMVIR-NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLL 239
           ++     NE  W+++++GC    N +  +  + A +   +KP  +   I+LL
Sbjct: 554 KRTGFEPNEAIWSSLVAGCRSHGNME--LAFYAADKLLELKPKGIETYILLL 603



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 4/132 (3%)

Query: 313 DLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN 372
           D+ EAM + +    E     S   + +L  C     L     VH ++ K G + D+ +  
Sbjct: 62  DVQEAMTMLT----EGKAVQSAMYVPLLHRCVETGSLGAARAVHGHMAKTGASADMFVAT 117

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
           +L+N Y +C +   + ++F+ M  R+ V+WT L++GY  +      L++F+EM E G  P
Sbjct: 118 SLVNAYMRCSAARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYP 177

Query: 433 DAITVLAILSAC 444
              T+ A L+AC
Sbjct: 178 SHYTLGATLNAC 189


>gi|356546044|ref|XP_003541442.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Glycine max]
          Length = 628

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 186/560 (33%), Positives = 311/560 (55%), Gaps = 20/560 (3%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPY 91
           + +++CA+   +   G +LH   LK+     P+   SLI+MY+K S  + + ++F+   +
Sbjct: 34  ATLQSCAH-NANLSKGKELHTHLLKNAFFGSPLAITSLINMYSKCSLIDHSLRVFNFPTH 92

Query: 92  --RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGR 149
             ++  ++N++I  F  N    R+L ++ +M   G          +I  C    +  +  
Sbjct: 93  HNKNVFAYNALIAGFLANALPQRALALYNQMRHLGIAPDKFTFPCVIRACGDDDDGFVVT 152

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
           +IH L+   G  EL VFV +AL++ Y K      A RVFE++ +R+ V W AM++G    
Sbjct: 153 KIHGLMFKVG-LELDVFVGSALVNTYLKFRFVGEAYRVFEELPVRDVVLWNAMVNGFAQI 211

Query: 210 QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS 269
             ++  + +FR M   GV P R T+T VL   + + D  NG+A+HG+    G++    +S
Sbjct: 212 GRFEEALGVFRRMGGNGVVPCRYTVTGVLSIFSVMGDFDNGRAVHGFVTKMGYESGVVVS 271

Query: 270 AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR-LER 328
            AL+ MY +C + +  A  +FE     D+  W+SI+  + + GD    ++LF RM    R
Sbjct: 272 NALIDMYGKC-KCVGDALSVFEMMDEIDIFSWNSIMSVHERCGDHYGTLRLFDRMMGSSR 330

Query: 329 IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF--------DVSIGNALMNMYSK 380
           ++P+ VT+  +L +CT  + L HG  +H Y++  GL          DV + NALM+MY+K
Sbjct: 331 VQPDLVTVTTVLPACTHLAALMHGREIHGYMVVNGLAKEESHDVFDDVLLNNALMDMYAK 390

Query: 381 CGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
           CG++  +  +F  M  +D  SW  +I+GYG HGYG EAL +F  M ++ + P+ I+ + +
Sbjct: 391 CGNMRDARMVFVNMREKDVASWNIMITGYGMHGYGGEALDIFSRMCQAQMVPNEISFVGL 450

Query: 441 LSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKP 500
           LSAC+HAG+VKE     + +  +  ++ +IEHY C +D+L ++G++ +A  +V TMP K 
Sbjct: 451 LSACSHAGMVKEGLGFLSEMESKYGVSPSIEHYTCVIDMLCRAGQLMEAYDLVLTMPFKA 510

Query: 501 STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEV-- 558
                 SL++ACR+H   ++AE+ A ++IE EP++  NY L+S V    G +   EEV  
Sbjct: 511 DPVGWRSLLAACRLHNDTDLAEVAASKVIELEPDHCGNYVLMSNVYGVVGRY---EEVLE 567

Query: 559 WR-VMRAKGLSKSYGFSRIE 577
           WR  M+ + + K  G S IE
Sbjct: 568 WRYTMKQQNVKKRPGCSWIE 587


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 173/511 (33%), Positives = 279/511 (54%), Gaps = 37/511 (7%)

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           N+L+S YAK    ++    FD MP+RD++S+N+ I  F+ N     SLE+F+ M   GF 
Sbjct: 93  NALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFE 152

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
                +  I++  +Q+ +L  G+QIH  +IV  +F  +VF+  AL D+Y+KC     A  
Sbjct: 153 PTEYTIVSILNASAQLSDLRYGKQIHGSIIVR-NFLGNVFIWNALTDMYAKCGEIEQARW 211

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           +F+ +  +N VSW  MISG   +   +  I L   M+  G  P +VT++ ++ A      
Sbjct: 212 LFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAA------ 265

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
                                        YC+C   +  AR +F   K KD+V W++++ 
Sbjct: 266 -----------------------------YCQCGR-VDEARRVFSEFKEKDIVCWTAMMV 295

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           GY+++G   +A+ LF+ M LE IEP+S TL +++SSC + + L HG  VH   + AGLN 
Sbjct: 296 GYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNN 355

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           ++ + +AL++MYSKCG I  +  +FN M  R+ VSW  +I G   +G+ ++AL+LF  M 
Sbjct: 356 NLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENML 415

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
           +   +PD +T + ILSAC H   +++ +  F+++  +  +   ++HYAC V+LLG++G+I
Sbjct: 416 QQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRI 475

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546
           E A  ++  M   P   I S+L+S C   G +  AE+ A  L E +P  A  Y +LS + 
Sbjct: 476 EQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMY 535

Query: 547 SESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +  G W     V  +M++K + K  GFS IE
Sbjct: 536 ASMGRWKDVASVRNLMKSKNVKKFAGFSWIE 566



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 106/413 (25%), Positives = 196/413 (47%), Gaps = 63/413 (15%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           +++L L+K+ +   G       + S++ A A   +   +G Q+H + +      +  I N
Sbjct: 137 QESLELFKR-MQREGFEPTEYTIVSILNASAQL-SDLRYGKQIHGSIIVRNFLGNVFIWN 194

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +L  MYAK  + E A  LFD +  ++ +SWN +I+ + +NG   + + +  +M L G + 
Sbjct: 195 ALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMP 254

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
               ++ II+   Q G ++  R                                    RV
Sbjct: 255 DQVTMSTIIAAYCQCGRVDEAR------------------------------------RV 278

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F +   ++ V WTAM+ G   +   +  + LF  M  E ++P   TL+ V+ +CA+L  L
Sbjct: 279 FSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASL 338

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
            +G+A+HG +   G + +  +S+AL+ MY +C   +  AR +F     ++VV W+++I G
Sbjct: 339 HHGQAVHGKSILAGLNNNLLVSSALIDMYSKCG-FIDDARSVFNLMPTRNVVSWNAMIVG 397

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
            +Q+G   +A++LF  M  ++ +P++VT + ILS+C           +HC  ++ G  + 
Sbjct: 398 CAQNGHDKDALELFENMLQQKFKPDNVTFIGILSAC-----------LHCNWIEQGQEYF 446

Query: 368 VSIGNA------------LMNMYSKCGSITSSHQIFNEMA-ARDFVSWTTLIS 407
            SI N             ++N+  + G I  +  +   MA   DF+ W+TL+S
Sbjct: 447 DSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLS 499



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 125/267 (46%), Gaps = 12/267 (4%)

Query: 57  SGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEM 116
           SG   D V  +++I+ Y +  + + A ++F E   +D + W +++  + +NG    +L +
Sbjct: 250 SGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLL 309

Query: 117 FREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYS 176
           F EM L      +  L+ ++S C+++  L  G+ +H   I+ G    ++ VS+AL+D+YS
Sbjct: 310 FNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAG-LNNNLLVSSALIDMYS 368

Query: 177 KCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTI 236
           KC     A  VF  M  RN VSW AMI GC  + +    ++LF  M ++  KP  VT   
Sbjct: 369 KCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIG 428

Query: 237 VLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI------IF 290
           +L AC     +  G+      Y       H ++  L H  C         RI      I 
Sbjct: 429 ILSACLHCNWIEQGQ-----EYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIK 483

Query: 291 ERTKVKDVVIWSSIIRGYSQSGDLSEA 317
                 D +IWS+++   S  GD+  A
Sbjct: 484 NMAHDPDFLIWSTLLSICSTKGDIVNA 510



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 76/148 (51%), Gaps = 1/148 (0%)

Query: 3   SKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDAD 62
           +K+  E+   L   E+    +  ++  L SV+ +CA   +  H G  +H  ++ +G + +
Sbjct: 298 AKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHH-GQAVHGKSILAGLNNN 356

Query: 63  PVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL 122
            ++S++LI MY+K    + A  +F+ MP R+ +SWN++I    QNG    +LE+F  M  
Sbjct: 357 LLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQ 416

Query: 123 CGFVLKAELLAGIISLCSQIGELELGRQ 150
             F        GI+S C     +E G++
Sbjct: 417 QKFKPDNVTFIGILSACLHCNWIEQGQE 444


>gi|255560101|ref|XP_002521068.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539637|gb|EEF41219.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 579

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 173/532 (32%), Positives = 302/532 (56%), Gaps = 8/532 (1%)

Query: 49  QLHCTALKSG---SDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT 105
           Q+H   L +G   +DA+ +    LI+ Y + +    A  +F++MP R   +WNS+I  ++
Sbjct: 3   QIHALILTTGLFFNDANSIAQ--LIASYGRINNIIPARNVFEKMPQRSINAWNSMIIAYS 60

Query: 106 QNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSV 165
           +  +    L ++  M   G    +      +  CS + +L++G  I     VD  +   V
Sbjct: 61  RTNYPDEVLNLYYRMISEGIKPDSSTFTVTLKACSSLMDLDMGEIIWNQA-VDFGYGFDV 119

Query: 166 FVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
           FV +++L+LY+K      A  VF++MV R+ VSWT MI+G   S      ID++R MQ+E
Sbjct: 120 FVVSSVLNLYAKSGKMDKAKIVFDKMVKRDVVSWTTMITGFAQSGRPLDAIDIYRTMQKE 179

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
             +   V +  ++ AC  L D + G ++HG+      + D+ L  +L+ MY +  + L  
Sbjct: 180 RTEGDGVVMVGLIQACTSLGDSKFGLSVHGHMVRREMNMDNVLQTSLIDMYAKNGK-LEL 238

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           A  +FE    K V+ W ++I G++Q+G  ++ +     M+    +P+ V+L++ LS+C +
Sbjct: 239 ASRVFEGIPYKSVISWGALISGFAQNGFANKTLASLVEMQNSGFKPDLVSLISSLSACAQ 298

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
              L  G  +H +I+K  L  D   G AL++MY+KCG++T +  +F+++  RD + W  +
Sbjct: 299 VGNLKVGKSLHGHIVKR-LYLDKVSGTALIDMYAKCGALTFARALFDQIEPRDLILWNAM 357

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           IS YG HG G EAL LFL+M+E+ + PD  T  ++LSAC+H+GLV+E +  F+ ++ + K
Sbjct: 358 ISSYGIHGDGIEALSLFLKMKETNITPDHATFASLLSACSHSGLVEEGQYWFHVLIDKSK 417

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
           I  + +HYAC VDLL ++G++E+A +++ +M +KP   I  +L+S C  H  L + EM+A
Sbjct: 418 IQPSEKHYACMVDLLSRAGQVEEAYQLIESMHIKPGLAIWVALLSGCLNHKNLLIGEMVA 477

Query: 526 HQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +++E+ P++   Y L+S   S +  W  A    ++M+  G+ K  G+S +E
Sbjct: 478 KKILESNPDDLGIYVLVSNFFSMAKKWDDAAVFRKIMKNTGMRKVPGYSAVE 529



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 118/219 (53%), Gaps = 7/219 (3%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           +  ++  +I+AC  +     FGL +H   ++   + D V+  SLI MYAK  K E A ++
Sbjct: 184 DGVVMVGLIQACT-SLGDSKFGLSVHGHMVRREMNMDNVLQTSLIDMYAKNGKLELASRV 242

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISL--CSQIG 143
           F+ +PY+  ISW ++I+ F QNGF  ++L    EM   GF  K +L++ I SL  C+Q+G
Sbjct: 243 FEGIPYKSVISWGALISGFAQNGFANKTLASLVEMQNSGF--KPDLVSLISSLSACAQVG 300

Query: 144 ELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMI 203
            L++G+ +H  ++      L     TAL+D+Y+KC     A  +F+Q+  R+ + W AMI
Sbjct: 301 NLKVGKSLHGHIV--KRLYLDKVSGTALIDMYAKCGALTFARALFDQIEPRDLILWNAMI 358

Query: 204 SGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
           S      +    + LF  M+   + P   T   +L AC+
Sbjct: 359 SSYGIHGDGIEALSLFLKMKETNITPDHATFASLLSACS 397


>gi|326495056|dbj|BAJ85624.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 673

 Score =  311 bits (796), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 179/573 (31%), Positives = 310/573 (54%), Gaps = 5/573 (0%)

Query: 4   KHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADP 63
           +H     LH   +   P   + +  +L   +KA   +   + +G +LHC A+K+G  AD 
Sbjct: 101 RHADALALHRGMRRRCPEA-HDDVVLLSLALKASVRSADFR-YGRRLHCNAVKAGG-ADG 157

Query: 64  VISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC 123
            + N L+ MYAK    E+A ++FD +  R+ +SW S+++   QNGF    L +F EM   
Sbjct: 158 FVMNCLVDMYAKAGDLENARKVFDRILGRNVVSWTSMLSGCLQNGFAEEGLALFNEMREE 217

Query: 124 GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
             +     +A ++  C+ +G L  GR +H  VI  G    + F++ A+LD+Y KC     
Sbjct: 218 RVLPSEYTMASVLMACTMLGSLHQGRWVHGSVIKHG-MVFNPFITAAVLDMYVKCGEVED 276

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
           A R+F+++   + V WT MI G   + +    + LF   +   + P  VT+  VL A A+
Sbjct: 277 ARRLFDELGFVDLVLWTTMIVGYTQNGSPLDALLLFSDKKFVHIVPNSVTIATVLSASAQ 336

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
           LR+L  G+ IH  +       +  +  AL+ MY +C +AL  A  IF R   KDVV W+S
Sbjct: 337 LRNLSLGRLIHAMSVKLLVIENDVVMNALVDMYAKC-KALSEANGIFGRISNKDVVTWNS 395

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           +I GY ++   +EA+ LFS+MR++   P++++++  LS+C     L  G   H Y +K  
Sbjct: 396 LIAGYVENDMGNEALMLFSQMRVQGSSPDAISIVNALSACVCLGDLLIGKCFHTYAVKRA 455

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
              +V +  AL+N+Y+KC  + S+ ++F+EM+ R+ V+W  +I GYG  G    ++ L  
Sbjct: 456 FLSNVYVNTALLNLYNKCADLPSAQRVFSEMSERNSVTWGAMIGGYGMQGDSAGSIDLLN 515

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS 483
           +M +  ++P+ +   +ILS C+H G+V   +  F+++ +   I  +++HYAC VD+L ++
Sbjct: 516 KMLKDNIQPNEVVFTSILSTCSHTGMVSVGKMCFDSMAQYFNITPSMKHYACMVDVLARA 575

Query: 484 GKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLS 543
           G +E+A + +  MPM     I  + +  C++H RLE  E   ++++   P+    Y L+S
Sbjct: 576 GNLEEALEFIQKMPMPADISIWGAFLHGCKLHSRLEFGEEAINRMMVLHPDKPDFYVLMS 635

Query: 544 MVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
            + +  G W  +  + R+M+ +GL K  G S +
Sbjct: 636 NLYTSYGRWDKSLAIRRLMQERGLVKLPGCSSV 668



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 129/258 (50%), Gaps = 8/258 (3%)

Query: 237 VLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK 296
           +L ACA L  LR   A+H      G          L+  Y    + L  AR + + T   
Sbjct: 29  LLPACATLPSLR---ALHARLLAHGLLRALRARTKLLSCYAALGD-LASARRVLDETPRP 84

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP-NSVTLLAI-LSSCTRQSFLSHGLG 354
           D   +   +  ++ +G  ++A+ L   MR    E  + V LL++ L +  R +   +G  
Sbjct: 85  DPYTYRVALGWHAAAGRHADALALHRGMRRRCPEAHDDVVLLSLALKASVRSADFRYGRR 144

Query: 355 VHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGY 414
           +HC  +KAG   D  + N L++MY+K G + ++ ++F+ +  R+ VSWT+++SG   +G+
Sbjct: 145 LHCNAVKAG-GADGFVMNCLVDMYAKAGDLENARKVFDRILGRNVVSWTSMLSGCLQNGF 203

Query: 415 GEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYA 474
            EE L LF EM+E  V P   T+ ++L AC   G + +   +  +V+K   +       A
Sbjct: 204 AEEGLALFNEMREERVLPSEYTMASVLMACTMLGSLHQGRWVHGSVIKHGMVFNPFI-TA 262

Query: 475 CYVDLLGKSGKIEDACKV 492
             +D+  K G++EDA ++
Sbjct: 263 AVLDMYVKCGEVEDARRL 280


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  311 bits (796), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 179/532 (33%), Positives = 297/532 (55%), Gaps = 7/532 (1%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           Q+    +K G D+  ++ N+L+  Y K ++ + A QLF EMP  D++S+N++I  ++++G
Sbjct: 170 QVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDG 229

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIG--ELELGRQIHALVIVDGSFELSVF 166
              +++ +F EM   G  LK         LC+ IG  ++ LG+QIH+ VI   +F  +VF
Sbjct: 230 LDEKAVNLFVEMQNSG--LKPTEFTFAAVLCANIGLDDIVLGQQIHSFVI-KTNFVWNVF 286

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           VS ALLD YSK    + A ++F++M  ++ VS+  +ISG      +    DLFR +Q   
Sbjct: 287 VSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTA 346

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
               +     +L   +   D   G+ IH        D +  +  +L+ MY +C +    A
Sbjct: 347 FDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGK-FEEA 405

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
            +IF     +  V W+++I  Y Q G   E ++LF++MR   +  +  T  ++L +    
Sbjct: 406 EMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASI 465

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
           + LS G  +H +I+K+G   +V  G+AL+++Y+KCGSI  + Q F EM  R+ VSW  +I
Sbjct: 466 ASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMI 525

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
           S Y  +G  E  L+ F EM  SG++PD+++ L +LSAC+H+GLV+E    FN++ +  K+
Sbjct: 526 SAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKL 585

Query: 467 ALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAH 526
               EHYA  VD+L +SG+  +A K+++ MP+ P   + SS+++ACRIH   E+A   A 
Sbjct: 586 DPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAAD 645

Query: 527 QLIEAEP-ENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           QL   E   +AA Y  +S + + +G W    +V + MR +G+ K   +S +E
Sbjct: 646 QLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVE 697



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 126/455 (27%), Positives = 219/455 (48%), Gaps = 44/455 (9%)

Query: 46  FGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT 105
            G Q+H   +K+    +  +SN+L+  Y+K      A +LFDEMP +D +S+N II+ + 
Sbjct: 268 LGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYA 327

Query: 106 QNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSV 165
            +G +  + ++FRE+    F  K    A ++S+ S   + E+GRQIHA  IV  + +  +
Sbjct: 328 WDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTA-DSEI 386

Query: 166 FVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
            V  +L+D+Y+KC  +  A  +F  +  R+ V WTAMIS  +    Y+ G+ LF  M++ 
Sbjct: 387 LVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQA 446

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
            V   + T   +L A A +  L  GK +H +    GF  +    +AL+ +Y +C  ++  
Sbjct: 447 SVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCG-SIKD 505

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           A   F+    +++V W+++I  Y+Q+G+    +K F  M L  ++P+SV+ L +LS+C+ 
Sbjct: 506 AVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSH 565

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
              +  GL                                S  QI+     R+   + ++
Sbjct: 566 SGLVEEGL----------------------------WHFNSMTQIYKLDPRRE--HYASV 595

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC----NHAGLVKEAETLFNNVM 461
           +      G   EA +L  EM    ++PD I   ++L+AC    N     + A+ LFN  M
Sbjct: 596 VDMLCRSGRFNEAEKLMAEMP---IDPDEIMWSSVLNACRIHKNQELARRAADQLFN--M 650

Query: 462 KEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
           +E + A     Y    ++   +G+ E+  KV   M
Sbjct: 651 EELRDAAP---YVNMSNIYAAAGQWENVSKVHKAM 682



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 137/504 (27%), Positives = 242/504 (48%), Gaps = 17/504 (3%)

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           + V +N +IS Y K      A +LFD M  R  ++W  +I  ++Q   +  + E+F +M 
Sbjct: 82  NTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQ 141

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHAL--VIVDGSFELSVFVSTALLDLYSKCH 179
            CG          ++S C+     E+G QI  +   I+   ++  + V   L+D Y K +
Sbjct: 142 RCGTEPDYVTFVTLLSGCNG---HEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSN 198

Query: 180 HWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLL 239
              +A ++F++M   + VS+ AMI+G       +  ++LF  MQ  G+KPT  T   VL 
Sbjct: 199 RLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLC 258

Query: 240 ACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVV 299
           A   L D+  G+ IH +     F ++  +S AL+  Y +  +++  AR +F+    +D V
Sbjct: 259 ANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSK-HDSVIDARKLFDEMPEQDGV 317

Query: 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
            ++ II GY+  G    A  LF  ++    +        +LS  +       G  +H   
Sbjct: 318 SYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQT 377

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEAL 419
           +    + ++ +GN+L++MY+KCG    +  IF  +  R  V WT +IS Y   G+ EE L
Sbjct: 378 IVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGL 437

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479
           QLF +M+++ V  D  T  ++L A      +   + L + ++K   ++      A  +D+
Sbjct: 438 QLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSAL-LDV 496

Query: 480 LGKSGKIEDACKVVSTMPMKPSTRILS--SLVSACRIHGRLEVAEMLAHQLIEA--EPEN 535
             K G I+DA +    MP +    I+S  +++SA   +G  E       +++ +  +P++
Sbjct: 497 YAKCGSIKDAVQTFQEMPDR---NIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDS 553

Query: 536 AANYTLLSMVCSESGNWLGAEEVW 559
            +   +LS  CS SG  L  E +W
Sbjct: 554 VSFLGVLS-ACSHSG--LVEEGLW 574



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 99/399 (24%), Positives = 181/399 (45%), Gaps = 26/399 (6%)

Query: 143 GELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAM 202
           GEL   RQ+   +    +   ++ +S      Y K  +   A ++F+ MV R  V+WT +
Sbjct: 66  GELSQARQLFEKMPHKNTVSTNMMISG-----YVKSGNLGEARKLFDGMVERTAVTWTIL 120

Query: 203 ISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGF 262
           I G      +    +LF  MQR G +P  VT   +L  C           +       G+
Sbjct: 121 IGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGY 180

Query: 263 DFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFS 322
           D    +   L+  YC+ +  L  A  +F+     D V ++++I GYS+ G   +A+ LF 
Sbjct: 181 DSRLIVGNTLVDSYCK-SNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFV 239

Query: 323 RMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCG 382
            M+   ++P   T  A+L +      +  G  +H +++K    ++V + NAL++ YSK  
Sbjct: 240 EMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHD 299

Query: 383 SITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILS 442
           S+  + ++F+EM  +D VS+  +ISGY + G  + A  LF E+Q +  +        +LS
Sbjct: 300 SVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLS 359

Query: 443 ACNHA-----GLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
             ++      G    A+T+      E  +  ++      VD+  K GK E+A  + + + 
Sbjct: 360 IASNTLDWEMGRQIHAQTIVTTADSEILVGNSL------VDMYAKCGKFEEAEMIFTNLT 413

Query: 498 MK---PSTRILSSLVS------ACRIHGRLEVAEMLAHQ 527
            +   P T ++S+ V         ++  ++  A ++A Q
Sbjct: 414 HRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQ 452



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 38/178 (21%)

Query: 354 GVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYG--- 410
            +   I+K G + D S  N  +  + K G ++ + Q+F +M  ++ VS   +ISGY    
Sbjct: 38  NIDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSG 97

Query: 411 --------FHGYGE--------------------EALQLFLEMQESGVEPDAITVLAILS 442
                   F G  E                    EA +LF++MQ  G EPD +T + +LS
Sbjct: 98  NLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLS 157

Query: 443 ACNHAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
            CN   +  +   +   ++K   + ++ +        VD   KS +++ AC++   MP
Sbjct: 158 GCNGHEMGNQITQVQTQIIKLGYDSRLIVG----NTLVDSYCKSNRLDLACQLFKEMP 211


>gi|359480813|ref|XP_002277337.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Vitis vinifera]
          Length = 634

 Score =  311 bits (796), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 189/563 (33%), Positives = 294/563 (52%), Gaps = 45/563 (7%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           E+   G+  +  + P V +AC      +  G+Q+H   +  G + D  + NSLI MY+K 
Sbjct: 114 EMKLKGVLPDKYVFPKVFRACGQLLWLE-VGIQVHKDVVICGCEFDLQVCNSLIDMYSKS 172

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
               S  ++FDEM  RD +SWNS+I+ +  NGF   S+E+   M + GF           
Sbjct: 173 GDVGSGRRVFDEMVERDVLSWNSMISGYVCNGFLEFSVELLASMRIRGF----------- 221

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
                                    E  +     ++D Y +      A  +FEQ+   N 
Sbjct: 222 -------------------------EPDMVTWNTVMDAYCRMGLCDEAWEIFEQIKEPNI 256

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVK-PTRVTLTIVLLACAELRDLRNGKAIHG 255
           +S T ++SG     N++  + +FR M    V  P   +L+ VL++C  L  L  G+ IHG
Sbjct: 257 ISLTTLVSGYSRIGNHEKSLGIFREMMSRRVAFPDLDSLSSVLVSCRHLGALVCGQEIHG 316

Query: 256 YAY--CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGD 313
           Y         F     AAL+ MY +C + +  A  +FE     DVV W+++I G+     
Sbjct: 317 YGIRSVDSSSFYKSAGAALLTMYVKC-KRIQDALNVFELMDRFDVVTWNAMILGFVDLEM 375

Query: 314 LSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNA 373
              A++ FS+M+   I  N +T+  +L +C  +S    G  VH YI K   +  + + NA
Sbjct: 376 GHLALECFSKMQRSGIMNNQITISTVLPACDLKS----GKQVHAYITKNSFSSVIPVWNA 431

Query: 374 LMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPD 433
           L++MYSKCG I +++ IF+ M +RD VSW T+I G+G HG G+ ALQL  +M  S V P+
Sbjct: 432 LIHMYSKCGCIGTAYSIFSNMISRDLVSWNTMIGGFGMHGLGQFALQLLRDMSHSDVCPN 491

Query: 434 AITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVV 493
           ++T  + LSAC+H+GLV E   LF+ + ++      +EH++C VDLL ++ ++EDA   +
Sbjct: 492 SVTFTSALSACSHSGLVDEGMELFHTMTRDFGFTPGMEHFSCVVDLLARADRLEDAVGFI 551

Query: 494 STMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWL 553
             MP+KPS  I S+L++ACR    + VA++ A QL + EPE+A NY  LS + + +G W 
Sbjct: 552 EKMPLKPSKHIWSALLAACRAQQNVSVAKLAAEQLFQLEPEHAGNYVTLSNIYARAGRWD 611

Query: 554 GAEEVWRVMRAKGLSKSYGFSRI 576
            A  V ++M  +GL K  G+S I
Sbjct: 612 DAVAVRKLMEDRGLVKPSGYSWI 634



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 139/537 (25%), Positives = 242/537 (45%), Gaps = 58/537 (10%)

Query: 45  HFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCF 104
           H G QLH   +  G D  P +   L+ MYA      SA  LFD++   +  +W +I+  +
Sbjct: 40  HQGKQLHQHIILCGLDHHPFMLTKLVQMYADCGDLGSAQALFDKLSQPNVFAWTAILGFY 99

Query: 105 TQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELS 164
           ++NG     +  + EM L G +    +   +   C Q+  LE+G Q+H  V++ G  E  
Sbjct: 100 SRNGLSDECVRTYSEMKLKGVLPDKYVFPKVFRACGQLLWLEVGIQVHKDVVICGC-EFD 158

Query: 165 VFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR 224
           + V  +L+D+YSK        RVF++MV R+ +SW +MISG + +   +  ++L  +M+ 
Sbjct: 159 LQVCNSLIDMYSKSGDVGSGRRVFDEMVERDVLSWNSMISGYVCNGFLEFSVELLASMRI 218

Query: 225 EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCE---CTE 281
            G +P  VT   V                                   M  YC    C E
Sbjct: 219 RGFEPDMVTWNTV-----------------------------------MDAYCRMGLCDE 243

Query: 282 ALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE-PNSVTLLAIL 340
           A      IFE+ K  +++  ++++ GYS+ G+  +++ +F  M   R+  P+  +L ++L
Sbjct: 244 AWE----IFEQIKEPNIISLTTLVSGYSRIGNHEKSLGIFREMMSRRVAFPDLDSLSSVL 299

Query: 341 SSCTRQSFLSHGLGVHCYIMKA--GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARD 398
            SC     L  G  +H Y +++    +F  S G AL+ MY KC  I  +  +F  M   D
Sbjct: 300 VSCRHLGALVCGQEIHGYGIRSVDSSSFYKSAGAALLTMYVKCKRIQDALNVFELMDRFD 359

Query: 399 FVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFN 458
            V+W  +I G+     G  AL+ F +MQ SG+  + IT+  +L AC+    +K  + +  
Sbjct: 360 VVTWNAMILGFVDLEMGHLALECFSKMQRSGIMNNQITISTVLPACD----LKSGKQVHA 415

Query: 459 NVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRL 518
            + K    +  I  +   + +  K G I  A  + S M  +      ++++    +HG  
Sbjct: 416 YITK-NSFSSVIPVWNALIHMYSKCGCIGTAYSIFSNMISRDLVS-WNTMIGGFGMHGLG 473

Query: 519 EVAEMLAHQLIEAEP-ENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFS 574
           + A  L   +  ++   N+  +T     CS SG      E++  M     ++ +GF+
Sbjct: 474 QFALQLLRDMSHSDVCPNSVTFTSALSACSHSGLVDEGMELFHTM-----TRDFGFT 525



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 149/289 (51%), Gaps = 10/289 (3%)

Query: 234 LTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERT 293
           L  +L  C+  + L  GK +H +   CG D    +   L+ MY +C + L  A+ +F++ 
Sbjct: 26  LNHLLQLCSNSKALHQGKQLHQHIILCGLDHHPFMLTKLVQMYADCGD-LGSAQALFDKL 84

Query: 294 KVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGL 353
              +V  W++I+  YS++G   E ++ +S M+L+ + P+      +  +C +  +L  G+
Sbjct: 85  SQPNVFAWTAILGFYSRNGLSDECVRTYSEMKLKGVLPDKYVFPKVFRACGQLLWLEVGI 144

Query: 354 GVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHG 413
            VH  ++  G  FD+ + N+L++MYSK G + S  ++F+EM  RD +SW ++ISGY  +G
Sbjct: 145 QVHKDVVICGCEFDLQVCNSLIDMYSKSGDVGSGRRVFDEMVERDVLSWNSMISGYVCNG 204

Query: 414 YGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY 473
           + E +++L   M+  G EPD +T   ++ A    GL  EA  +F  + +   I+L     
Sbjct: 205 FLEFSVELLASMRIRGFEPDMVTWNTVMDAYCRMGLCDEAWEIFEQIKEPNIISLTT--- 261

Query: 474 ACYVDLLGKSGKIEDACKVVSTMPMK----PSTRILSSLVSACRIHGRL 518
              V    + G  E +  +   M  +    P    LSS++ +CR  G L
Sbjct: 262 --LVSGYSRIGNHEKSLGIFREMMSRRVAFPDLDSLSSVLVSCRHLGAL 308



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 147/315 (46%), Gaps = 38/315 (12%)

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           ++ LCS    L  G+Q+H  +I+ G  +   F+ T L+ +Y+ C     A  +F+++   
Sbjct: 29  LLQLCSNSKALHQGKQLHQHIILCG-LDHHPFMLTKLVQMYADCGDLGSAQALFDKLSQP 87

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
           N  +WTA++     +   D  +  +  M+ +GV P +     V  AC +L  L  G  +H
Sbjct: 88  NVFAWTAILGFYSRNGLSDECVRTYSEMKLKGVLPDKYVFPKVFRACGQLLWLEVGIQVH 147

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
                CG +FD  +  +L+ MY +  + +   R +F+    +DV+ W+S+I GY  +G L
Sbjct: 148 KDVVICGCEFDLQVCNSLIDMYSKSGD-VGSGRRVFDEMVERDVLSWNSMISGYVCNGFL 206

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
             +++L + MR+   EP+ VT                                    N +
Sbjct: 207 EFSVELLASMRIRGFEPDMVTW-----------------------------------NTV 231

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE-PD 433
           M+ Y + G    + +IF ++   + +S TTL+SGY   G  E++L +F EM    V  PD
Sbjct: 232 MDAYCRMGLCDEAWEIFEQIKEPNIISLTTLVSGYSRIGNHEKSLGIFREMMSRRVAFPD 291

Query: 434 AITVLAILSACNHAG 448
             ++ ++L +C H G
Sbjct: 292 LDSLSSVLVSCRHLG 306



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 153/351 (43%), Gaps = 25/351 (7%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           +E++L ++++ +     + +   L SV+ +C +       G ++H   ++S   +    S
Sbjct: 272 HEKSLGIFREMMSRRVAFPDLDSLSSVLVSCRHLGALV-CGQEIHGYGIRSVDSSSFYKS 330

Query: 67  N--SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG 124
              +L++MY K  + + A  +F+ M   D ++WN++I  F        +LE F +M   G
Sbjct: 331 AGAALLTMYVKCKRIQDALNVFELMDRFDVVTWNAMILGFVDLEMGHLALECFSKMQRSG 390

Query: 125 FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
            +     ++ ++  C    +L+ G+Q+HA  I   SF   + V  AL+ +YSKC     A
Sbjct: 391 IMNNQITISTVLPAC----DLKSGKQVHAY-ITKNSFSSVIPVWNALIHMYSKCGCIGTA 445

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
             +F  M+ R+ VSW  MI G          + L R M    V P  VT T  L AC+  
Sbjct: 446 YSIFSNMISRDLVSWNTMIGGFGMHGLGQFALQLLRDMSHSDVCPNSVTFTSALSACSH- 504

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCEC-----TEALHPARIIFERTKVKDVV 299
               +G    G         D   +  + H  C        + L  A    E+  +K   
Sbjct: 505 ----SGLVDEGMELFHTMTRDFGFTPGMEHFSCVVDLLARADRLEDAVGFIEKMPLKPSK 560

Query: 300 -IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP----NSVTLLAILSSCTR 345
            IWS+++       ++S A KL +  +L ++EP    N VTL  I +   R
Sbjct: 561 HIWSALLAACRAQQNVSVA-KLAAE-QLFQLEPEHAGNYVTLSNIYARAGR 609



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 107/240 (44%), Gaps = 15/240 (6%)

Query: 318 MKLFSRMR----LERIEPN---SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSI 370
           MK+F   R    L    PN   S  L  +L  C+    L  G  +H +I+  GL+    +
Sbjct: 1   MKVFLFKRAISSLPTSNPNLLSSFQLNHLLQLCSNSKALHQGKQLHQHIILCGLDHHPFM 60

Query: 371 GNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV 430
              L+ MY+ CG + S+  +F++++  +  +WT ++  Y  +G  +E ++ + EM+  GV
Sbjct: 61  LTKLVQMYADCGDLGSAQALFDKLSQPNVFAWTAILGFYSRNGLSDECVRTYSEMKLKGV 120

Query: 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC--YVDLLGKSGKIED 488
            PD      +  AC     ++    +  +V+         +   C   +D+  KSG +  
Sbjct: 121 LPDKYVFPKVFRACGQLLWLEVGIQVHKDVV---ICGCEFDLQVCNSLIDMYSKSGDVGS 177

Query: 489 ACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA-EMLAHQLIEA-EPENAANYTLLSMVC 546
             +V   M ++      +S++S    +G LE + E+LA   I   EP+     T++   C
Sbjct: 178 GRRVFDEM-VERDVLSWNSMISGYVCNGFLEFSVELLASMRIRGFEPDMVTWNTVMDAYC 236


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  311 bits (796), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 165/446 (36%), Positives = 259/446 (58%), Gaps = 3/446 (0%)

Query: 132 LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM 191
           +  I+  C+  G++ LGR +H   +       + F +T LLD+Y+KC     A+ VF+ M
Sbjct: 1   MVSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNT-LLDMYAKCGVLDGAILVFDLM 59

Query: 192 VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGK 251
            +R  V+WT++I+        D  I LF  M REGV P   T+T VL ACA    L NGK
Sbjct: 60  SVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGK 119

Query: 252 AIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQS 311
            +H Y        +  +  ALM MY +C  ++  A  +F    VKD++ W+++I GYS++
Sbjct: 120 DVHNYIRENDMQSNIFVCNALMDMYAKCG-SMEDANSVFLEMPVKDIISWNTMIGGYSKN 178

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
              +EA+ LF  M LE ++P+  TL  IL +C   + L  G  VH +I++ G   D  + 
Sbjct: 179 SLPNEALSLFGDMVLE-MKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVA 237

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
           NAL++MY KCG    +  +F+ +  +D ++WT +I+GYG HG+G  A+  F EM+++G+E
Sbjct: 238 NALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIE 297

Query: 432 PDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACK 491
           PD ++ ++IL AC+H+GL+ E    FN +  E  +   +EHYAC VDLL +SGK+  A K
Sbjct: 298 PDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYK 357

Query: 492 VVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGN 551
            + +MP++P   I  +L+S CRIH  +++AE +A  + E EPEN   Y LL+   +E+  
Sbjct: 358 FIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANTYAEAEK 417

Query: 552 WLGAEEVWRVMRAKGLSKSYGFSRIE 577
           W   +++ + +  +GL K+ G S IE
Sbjct: 418 WEEVKKLRQKIGRRGLKKNPGCSWIE 443



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 109/384 (28%), Positives = 189/384 (49%), Gaps = 8/384 (2%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPY 91
           S+++ACA        G  +H + +K+         N+L+ MYAK    + A  +FD M  
Sbjct: 3   SILQACANCGD-VSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSV 61

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQI 151
           R  ++W S+I  + + G    ++ +F EM   G       +  ++  C+  G LE G+ +
Sbjct: 62  RTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDV 121

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQN 211
           H   I +   + ++FV  AL+D+Y+KC     A  VF +M +++ +SW  MI G   +  
Sbjct: 122 HNY-IRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSL 180

Query: 212 YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAA 271
            +  + LF  M  E +KP   TL  +L ACA L  L  GK +HG+    GF  D  ++ A
Sbjct: 181 PNEALSLFGDMVLE-MKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANA 239

Query: 272 LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP 331
           L+ MY +C   +  AR++F+    KD++ W+ +I GY   G  + A+  F+ MR   IEP
Sbjct: 240 LVDMYVKCGVPV-LARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEP 298

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN--ALMNMYSKCGSITSSHQ 389
           + V+ ++IL +C+    L  G      +M+   N    + +   ++++ ++ G +  +++
Sbjct: 299 DEVSFISILYACSHSGLLDEGWRFF-NVMQDECNVKPKLEHYACIVDLLARSGKLAMAYK 357

Query: 390 IFNEMAAR-DFVSWTTLISGYGFH 412
               M    D   W  L+SG   H
Sbjct: 358 FIKSMPIEPDATIWGALLSGCRIH 381



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 90/191 (47%), Gaps = 7/191 (3%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           E+ P G       L  ++ ACA   +    G ++H   L++G  +D  ++N+L+ MY K 
Sbjct: 194 EMKPDG-----TTLACILPACASLASLDR-GKEVHGHILRNGFFSDQQVANALVDMYVKC 247

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
             P  A  LFD +P +D I+W  +I  +  +GF   ++  F EM   G          I+
Sbjct: 248 GVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISIL 307

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
             CS  G L+ G +   ++  + + +  +     ++DL ++     +A +  + M I  +
Sbjct: 308 YACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPD 367

Query: 197 VS-WTAMISGC 206
            + W A++SGC
Sbjct: 368 ATIWGALLSGC 378


>gi|326522845|dbj|BAJ88468.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 776

 Score =  311 bits (796), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 176/526 (33%), Positives = 285/526 (54%), Gaps = 14/526 (2%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           LH   +K+G+ AD  ++ SL+++Y + +    A +LFD MP ++ ++W ++I   T N  
Sbjct: 98  LHGHMVKTGTAADMFVATSLVNVYMRCASSRDARRLFDGMPDKNVVTWTALITGHTLNSE 157

Query: 110 YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVST 169
              +LE+F EM   G       L G++S CS    ++LG+Q+H   I  G+  ++  +  
Sbjct: 158 PALALEVFVEMLELGRYPSHYTLGGMLSACSAARRIDLGQQVHGYSIKYGADTITS-MGN 216

Query: 170 ALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNY-DTGIDLFRAMQREGVK 228
           +L  LY K       LR F+    +N ++WT MIS C + +NY D G+ LF  M   GV 
Sbjct: 217 SLCRLYCKSGDLESGLRAFKGTPDKNVITWTTMISSCAEDENYLDLGLSLFLDMLEGGVM 276

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
           P   TLT V+  C    D+  GK +  + Y  G + +  +  + M++Y    E     R+
Sbjct: 277 PNEFTLTSVMSLCGARLDMSLGKQVQAFCYKVGCEANLPVKNSTMYLYLRKGETDEAMRL 336

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLS-----------EAMKLFSRMRLERIEPNSVTLL 337
            FE      ++ W+++I GY+Q  D +           +A+KLF  +    ++P+  T  
Sbjct: 337 -FEEMDSSSIITWNAMISGYAQIMDSAKDDLHARSRGFQALKLFRDLVRSELKPDLFTFS 395

Query: 338 AILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR 397
           +ILS C+    L  G  +H   +K G   DV + +AL+NMY+KCGSI  + + F EM  R
Sbjct: 396 SILSVCSAMMALEQGEQIHANTIKTGCLSDVVVNSALVNMYNKCGSIECATKAFVEMPTR 455

Query: 398 DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLF 457
             V+WT++ISGY  HG  ++A+QLF +M  SG  P+ IT +++LSAC++AGLV+EAE  F
Sbjct: 456 TPVTWTSMISGYSQHGRSQDAIQLFEDMVLSGARPNEITFVSLLSACSYAGLVEEAERYF 515

Query: 458 NNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGR 517
           + +  E  I   ++HY C VD+  + G+++DA   +     +P+  I SSLV+ CR HG 
Sbjct: 516 DMMRNEYHIEPLVDHYGCMVDMFVRLGRLDDAFSFIKRTGFEPNEAIWSSLVAGCRSHGN 575

Query: 518 LEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMR 563
           +E+A   A +L+E +P+    Y LL  +   +G W     V ++ +
Sbjct: 576 MELAFYAADRLLELKPKVIETYVLLLNMYISTGRWRDVARVRKLAK 621



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 111/428 (25%), Positives = 202/428 (47%), Gaps = 22/428 (5%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G Y +   L  ++ AC+ A+     G Q+H  ++K G+D    + NSL  +Y K    ES
Sbjct: 172 GRYPSHYTLGGMLSACSAAR-RIDLGQQVHGYSIKYGADTITSMGNSLCRLYCKSGDLES 230

Query: 82  AYQLFDEMPYRDTISWNSII-NCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
             + F   P ++ I+W ++I +C     +    L +F +M   G +     L  ++SLC 
Sbjct: 231 GLRAFKGTPDKNVITWTTMISSCAEDENYLDLGLSLFLDMLEGGVMPNEFTLTSVMSLCG 290

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
              ++ LG+Q+ A     G  E ++ V  + + LY +      A+R+FE+M   + ++W 
Sbjct: 291 ARLDMSLGKQVQAFCYKVGC-EANLPVKNSTMYLYLRKGETDEAMRLFEEMDSSSIITWN 349

Query: 201 AMISG---CIDSQNYD--------TGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
           AMISG    +DS   D          + LFR + R  +KP   T + +L  C+ +  L  
Sbjct: 350 AMISGYAQIMDSAKDDLHARSRGFQALKLFRDLVRSELKPDLFTFSSILSVCSAMMALEQ 409

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
           G+ IH      G   D  +++AL++MY +C  ++  A   F     +  V W+S+I GYS
Sbjct: 410 GEQIHANTIKTGCLSDVVVNSALVNMYNKCG-SIECATKAFVEMPTRTPVTWTSMISGYS 468

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
           Q G   +A++LF  M L    PN +T +++LS+C+    +      +  +M+   + +  
Sbjct: 469 QHGRSQDAIQLFEDMVLSGARPNEITFVSLLSACSYAGLVEEA-ERYFDMMRNEYHIEPL 527

Query: 370 IGN--ALMNMYSKCGSITSSHQIFNEMA-ARDFVSWTTLISGYGFHGYGEEAL---QLFL 423
           + +   +++M+ + G +  +           +   W++L++G   HG  E A       L
Sbjct: 528 VDHYGCMVDMFVRLGRLDDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADRLL 587

Query: 424 EMQESGVE 431
           E++   +E
Sbjct: 588 ELKPKVIE 595



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 156/338 (46%), Gaps = 30/338 (8%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G+  N   L SV+  C  A+     G Q+     K G +A+  + NS + +Y +  + + 
Sbjct: 274 GVMPNEFTLTSVMSLCG-ARLDMSLGKQVQAFCYKVGCEANLPVKNSTMYLYLRKGETDE 332

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQ------NGFYVRS-----LEMFREMYLCGFVLKAE 130
           A +LF+EM     I+WN++I+ + Q      +  + RS     L++FR+  L    LK +
Sbjct: 333 AMRLFEEMDSSSIITWNAMISGYAQIMDSAKDDLHARSRGFQALKLFRD--LVRSELKPD 390

Query: 131 L--LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
           L   + I+S+CS +  LE G QIHA  I  G     V V++AL+++Y+KC     A + F
Sbjct: 391 LFTFSSILSVCSAMMALEQGEQIHANTIKTGCLS-DVVVNSALVNMYNKCGSIECATKAF 449

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
            +M  R  V+WT+MISG          I LF  M   G +P  +T   +L AC+      
Sbjct: 450 VEMPTRTPVTWTSMISGYSQHGRSQDAIQLFEDMVLSGARPNEITFVSLLSACS-----Y 504

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI-----IFERTKVK-DVVIWS 302
            G       Y      ++H+   + H  C     +   R+       +RT  + +  IWS
Sbjct: 505 AGLVEEAERYFDMMRNEYHIEPLVDHYGCMVDMFVRLGRLDDAFSFIKRTGFEPNEAIWS 564

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAIL 340
           S++ G    G++   +  ++  RL  ++P  +    +L
Sbjct: 565 SLVAGCRSHGNME--LAFYAADRLLELKPKVIETYVLL 600



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 131/260 (50%), Gaps = 4/260 (1%)

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQ--REGVKPTRVTLTIVLLACAELR 245
           F++       S  A+ +G ++ ++    +D   AM   R+G          +L  C E  
Sbjct: 31  FDKGTSYQRSSAQALENGRLEHESPPRPLDAQEAMGMLRDGQTVQSAMYVPLLHRCVEAG 90

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
            L   +A+HG+    G   D  ++ +L+++Y  C  +   AR +F+    K+VV W+++I
Sbjct: 91  GLGAARALHGHMVKTGTAADMFVATSLVNVYMRCASS-RDARRLFDGMPDKNVVTWTALI 149

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
            G++ + + + A+++F  M      P+  TL  +LS+C+    +  G  VH Y +K G +
Sbjct: 150 TGHTLNSEPALALEVFVEMLELGRYPSHYTLGGMLSACSAARRIDLGQQVHGYSIKYGAD 209

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYG-FHGYGEEALQLFLE 424
              S+GN+L  +Y K G + S  + F     ++ ++WTT+IS       Y +  L LFL+
Sbjct: 210 TITSMGNSLCRLYCKSGDLESGLRAFKGTPDKNVITWTTMISSCAEDENYLDLGLSLFLD 269

Query: 425 MQESGVEPDAITVLAILSAC 444
           M E GV P+  T+ +++S C
Sbjct: 270 MLEGGVMPNEFTLTSVMSLC 289



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 113/232 (48%), Gaps = 5/232 (2%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           Q L L++ +L  S L  +     S++  C+     +  G Q+H   +K+G  +D V++++
Sbjct: 374 QALKLFR-DLVRSELKPDLFTFSSILSVCSAMMALEQ-GEQIHANTIKTGCLSDVVVNSA 431

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           L++MY K    E A + F EMP R  ++W S+I+ ++Q+G    ++++F +M L G    
Sbjct: 432 LVNMYNKCGSIECATKAFVEMPTRTPVTWTSMISGYSQHGRSQDAIQLFEDMVLSGARPN 491

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
                 ++S CS  G +E   +   ++  +   E  V     ++D++ +      A    
Sbjct: 492 EITFVSLLSACSYAGLVEEAERYFDMMRNEYHIEPLVDHYGCMVDMFVRLGRLDDAFSFI 551

Query: 189 EQMVIR-NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLL 239
           ++     NE  W+++++GC    N +  +  + A +   +KP  +   ++LL
Sbjct: 552 KRTGFEPNEAIWSSLVAGCRSHGNME--LAFYAADRLLELKPKVIETYVLLL 601



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 90/182 (49%), Gaps = 4/182 (2%)

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIF 391
            S   + +L  C     L     +H +++K G   D+ +  +L+N+Y +C S   + ++F
Sbjct: 75  QSAMYVPLLHRCVEAGGLGAARALHGHMVKTGTAADMFVATSLVNVYMRCASSRDARRLF 134

Query: 392 NEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVK 451
           + M  ++ V+WT LI+G+  +     AL++F+EM E G  P   T+  +LSAC+ A  + 
Sbjct: 135 DGMPDKNVVTWTALITGHTLNSEPALALEVFVEMLELGRYPSHYTLGGMLSACSAARRID 194

Query: 452 EAETLFNNVMKEKKIAL-AIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVS 510
             + +    +K     + ++ +  C   L  KSG +E   +     P K +    ++++S
Sbjct: 195 LGQQVHGYSIKYGADTITSMGNSLCR--LYCKSGDLESGLRAFKGTPDK-NVITWTTMIS 251

Query: 511 AC 512
           +C
Sbjct: 252 SC 253


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  311 bits (796), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 192/567 (33%), Positives = 314/567 (55%), Gaps = 39/567 (6%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF-SKP 79
           SG Y +  + PSV+K+C   +  + FG  +H   ++ G   D    N+L++MY+KF S  
Sbjct: 4   SGKYPDHNVFPSVLKSCTLMKDLR-FGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLE 62

Query: 80  ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG--FVLKAEL---LAG 134
           E   Q F                C ++    +  +   RE+  C     L  EL   +AG
Sbjct: 63  EGGVQRF----------------CDSK---MLGGIPEPREIGKCSNSHDLPCELDERVAG 103

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH---HWLIALR-VFEQ 190
           I     Q G+L    Q+  ++    +++  VF      D+YSK     ++L +LR VFE 
Sbjct: 104 I----DQNGDLN---QMSNILYQVNTYK-KVFDEGKTSDVYSKKEKESYYLGSLRKVFEM 155

Query: 191 MVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNG 250
           M  R+ VSW  +ISG   +  ++  + + R M    ++P   TL+ VL   AE  +L  G
Sbjct: 156 MPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKG 215

Query: 251 KAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQ 310
           K IHGYA   G+D D  + ++L+ MY +CT      R+ +   +  D + W+SII G  Q
Sbjct: 216 KEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQ-HDGISWNSIIAGCVQ 274

Query: 311 SGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSI 370
           +G   E +K F +M + +I+PN V+  +I+ +C   + L  G  +H YI+++  + +V I
Sbjct: 275 NGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFI 334

Query: 371 GNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV 430
            +AL++MY+KCG+I ++  IF++M   D VSWT +I GY  HG+  +A+ LF  M+  GV
Sbjct: 335 ASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGV 394

Query: 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDAC 490
           +P+ +  +A+L+AC+HAGLV EA   FN++ ++ +I   +EHYA   DLLG+ G++E+A 
Sbjct: 395 KPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAY 454

Query: 491 KVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESG 550
           + +S M ++P+  + S+L++ACR+H  +E+AE ++ +L   +P+N   Y LLS + S +G
Sbjct: 455 EFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAG 514

Query: 551 NWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            W  A ++   MR KG+ K    S IE
Sbjct: 515 RWKDARKLRIAMRDKGMKKKPACSWIE 541



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 129/312 (41%), Gaps = 21/312 (6%)

Query: 222 MQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTE 281
           M   G  P       VL +C  ++DLR G+++HG     G  FD +   ALM+MY +   
Sbjct: 1   MLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWS 60

Query: 282 ALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILS 341
                   F  +K+   +     I   S S DL   +      R+  I+ N         
Sbjct: 61  LEEGGVQRFCDSKMLGGIPEPREIGKCSNSHDLPCELD----ERVAGIDQN--------G 108

Query: 342 SCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS 401
              + S + + +  +  +   G   DV       + Y     + S  ++F  M  RD VS
Sbjct: 109 DLNQMSNILYQVNTYKKVFDEGKTSDVYSKKEKESYY-----LGSLRKVFEMMPKRDIVS 163

Query: 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA-CNHAGLVKEAETLFNNV 460
           W T+ISG   +G  E+AL +  EM  + + PD+ T+ ++L     +  L+K  E     +
Sbjct: 164 WNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAI 223

Query: 461 MKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEV 520
                  + I   +  +D+  K  +++D+C+V   +P        +S+++ C  +G  + 
Sbjct: 224 RNGYDADVFIG--SSLIDMYAKCTRVDDSCRVFYMLPQHDGIS-WNSIIAGCVQNGMFDE 280

Query: 521 AEMLAHQLIEAE 532
                 Q++ A+
Sbjct: 281 GLKFFQQMLIAK 292



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 71/142 (50%), Gaps = 2/142 (1%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V    +++ L  ++Q L  + +  N     S++ ACA+  T  H G QLH   ++S  D 
Sbjct: 273 VQNGMFDEGLKFFQQML-IAKIKPNHVSFSSIMPACAHLTT-LHLGKQLHGYIIRSRFDG 330

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           +  I+++L+ MYAK     +A  +FD+M   D +SW ++I  +  +G    ++ +F+ M 
Sbjct: 331 NVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRME 390

Query: 122 LCGFVLKAELLAGIISLCSQIG 143
           + G          +++ CS  G
Sbjct: 391 VEGVKPNYVAFMAVLTACSHAG 412


>gi|297842209|ref|XP_002888986.1| hypothetical protein ARALYDRAFT_476599 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334827|gb|EFH65245.1| hypothetical protein ARALYDRAFT_476599 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 717

 Score =  310 bits (795), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 188/565 (33%), Positives = 301/565 (53%), Gaps = 13/565 (2%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           +E+  SG+  N+  + SVI AC           Q+H    KSG   D  ++ +LISM +K
Sbjct: 162 REMRHSGVEINSCTVTSVISACGRPSMVCE-ASQVHAWVFKSGFYLDTSVAAALISMNSK 220

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINC----FTQNGFYVRSLEMFREMYLCGFVLKAEL 131
                 + ++F+++   D I   +I+N     F+QN    +++ +F  M   G  L  + 
Sbjct: 221 SGDINLSERVFEDL---DDIRRQNIVNVMVTSFSQNKKPGKAIRLFTRMLQEG--LNPDE 275

Query: 132 LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM 191
            + + SL S +  L LG+Q+H+  +  G   L + V ++L  +YSKC     +  +F+++
Sbjct: 276 FS-VCSLLSVLDCLNLGKQVHSYTLKSG-LILDLTVGSSLFTMYSKCGSLEESYSLFQEI 333

Query: 192 VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGK 251
             ++   W +MISG  +       I LF  M  EG  P   TL  VL  C+ L  L   K
Sbjct: 334 PFKDNACWASMISGFNEYGYLREAIGLFSEMLDEGTSPDESTLAAVLTVCSSLPSLPRSK 393

Query: 252 AIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQS 311
            IHGY    G D    L +AL++ Y +C  +L  AR +++R    D V  SS+I GYSQ 
Sbjct: 394 EIHGYTLRAGIDRGMPLGSALVNTYSKCG-SLKLARKVYDRLPEMDPVSCSSLISGYSQH 452

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
           G + +   LF  M +     +S  + +IL +         G  VH YI K GL  + S+G
Sbjct: 453 GLVQDGFLLFRDMVMSGFSMDSYAISSILKAAVLSEESELGAQVHAYITKIGLCTEPSVG 512

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
           ++L+ MYSK GSI    + F+++   D ++WT LI+ Y  HG   EALQ++  M+E G +
Sbjct: 513 SSLLTMYSKFGSIEDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYCLMKEKGFK 572

Query: 432 PDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACK 491
           PD +T + +LSAC+H GLV+E     N+++K+  I     HY C VD LG+SG++ +A  
Sbjct: 573 PDKVTFVGVLSACSHGGLVEEGYFHLNSMVKDYGIEPENRHYVCMVDALGRSGRLREAEN 632

Query: 492 VVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGN 551
            ++T P+KP   +  +L++AC+I+G +E+ ++ A + IE EP +A  Y  LS + +E G 
Sbjct: 633 FINTRPIKPDALVWGTLLAACKIYGDVELGKLAAKKAIELEPSDAGAYVSLSNILAEVGE 692

Query: 552 WLGAEEVWRVMRAKGLSKSYGFSRI 576
           W   EE  ++M+  G+ K  G+S +
Sbjct: 693 WDEVEETRKLMKGTGVQKEPGWSSV 717



 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 139/471 (29%), Positives = 250/471 (53%), Gaps = 17/471 (3%)

Query: 64  VISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC 123
           V+ +SLI  ++K  + E AY++F +    +   WN+II    +N  Y    ++F EM  C
Sbjct: 8   VVQSSLIDAFSKNLRFEDAYKVFRDTLSANVYCWNTIIAGALRNQNYGAVFDLFHEM--C 65

Query: 124 GFVLKAE--LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
               K +    + +++ C+ + EL  G+ + A VI  G+ +  VFV T+++DLY+KC H 
Sbjct: 66  NGFQKPDSYTYSSVLAACASLEELRFGKVVQARVIKCGAED--VFVCTSIVDLYAKCGHM 123

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             A  VF ++   + VSWT M+SG   S +  + +++FR M+  GV+    T+T V+ AC
Sbjct: 124 AEAREVFSRISNPSVVSWTVMLSGYTKSNDAFSALEIFREMRHSGVEINSCTVTSVISAC 183

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
                +     +H + +  GF  D  ++AAL+ M  +  +     R+  +   ++   I 
Sbjct: 184 GRPSMVCEASQVHAWVFKSGFYLDTSVAAALISMNSKSGDINLSERVFEDLDDIRRQNIV 243

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILS--SCTRQSFLSHGLGVHCYI 359
           + ++  +SQ+    +A++LF+RM  E + P+  ++ ++LS   C     L+ G  VH Y 
Sbjct: 244 NVMVTSFSQNKKPGKAIRLFTRMLQEGLNPDEFSVCSLLSVLDC-----LNLGKQVHSYT 298

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEAL 419
           +K+GL  D+++G++L  MYSKCGS+  S+ +F E+  +D   W ++ISG+  +GY  EA+
Sbjct: 299 LKSGLILDLTVGSSLFTMYSKCGSLEESYSLFQEIPFKDNACWASMISGFNEYGYLREAI 358

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479
            LF EM + G  PD  T+ A+L+ C+    +  ++ +    ++   I   +   +  V+ 
Sbjct: 359 GLFSEMLDEGTSPDESTLAAVLTVCSSLPSLPRSKEIHGYTLR-AGIDRGMPLGSALVNT 417

Query: 480 LGKSGKIEDACKVVSTMP-MKPSTRILSSLVSACRIHGRLEVAEMLAHQLI 529
             K G ++ A KV   +P M P +   SSL+S    HG ++   +L   ++
Sbjct: 418 YSKCGSLKLARKVYDRLPEMDPVS--CSSLISGYSQHGLVQDGFLLFRDMV 466



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 146/491 (29%), Positives = 246/491 (50%), Gaps = 18/491 (3%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPY 91
           SV+ ACA  +    FG  +    +K G++ D  +  S++ +YAK      A ++F  +  
Sbjct: 78  SVLAACASLE-ELRFGKVVQARVIKCGAE-DVFVCTSIVDLYAKCGHMAEAREVFSRISN 135

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQI 151
              +SW  +++ +T++     +LE+FREM   G  + +  +  +IS C +   +    Q+
Sbjct: 136 PSVVSWTVMLSGYTKSNDAFSALEIFREMRHSGVEINSCTVTSVISACGRPSMVCEASQV 195

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM-VIRNEVSWTAMISGCIDSQ 210
           HA V   G F L   V+ AL+ + SK     ++ RVFE +  IR +     M++    ++
Sbjct: 196 HAWVFKSG-FYLDTSVAAALISMNSKSGDINLSERVFEDLDDIRRQNIVNVMVTSFSQNK 254

Query: 211 NYDTGIDLFRAMQREGVKPTRVTLTIVL--LACAELRDLRNGKAIHGYAYCCGFDFDHHL 268
                I LF  M +EG+ P   ++  +L  L C  L     GK +H Y    G   D  +
Sbjct: 255 KPGKAIRLFTRMLQEGLNPDEFSVCSLLSVLDCLNL-----GKQVHSYTLKSGLILDLTV 309

Query: 269 SAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER 328
            ++L  MY +C  +L  +  +F+    KD   W+S+I G+++ G L EA+ LFS M  E 
Sbjct: 310 GSSLFTMYSKCG-SLEESYSLFQEIPFKDNACWASMISGFNEYGYLREAIGLFSEMLDEG 368

Query: 329 IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSH 388
             P+  TL A+L+ C+    L     +H Y ++AG++  + +G+AL+N YSKCGS+  + 
Sbjct: 369 TSPDESTLAAVLTVCSSLPSLPRSKEIHGYTLRAGIDRGMPLGSALVNTYSKCGSLKLAR 428

Query: 389 QIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG 448
           ++++ +   D VS ++LISGY  HG  ++   LF +M  SG   D+  + +IL A   A 
Sbjct: 429 KVYDRLPEMDPVSCSSLISGYSQHGLVQDGFLLFRDMVMSGFSMDSYAISSILKA---AV 485

Query: 449 LVKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDACKVVSTMPMKPSTRILS 506
           L +E+E          KI L  E    +  + +  K G IED CK  S +   P     +
Sbjct: 486 LSEESELGAQVHAYITKIGLCTEPSVGSSLLTMYSKFGSIEDCCKAFSQIN-GPDLIAWT 544

Query: 507 SLVSACRIHGR 517
           +L+++   HG+
Sbjct: 545 ALIASYAQHGK 555



 Score = 43.1 bits (100), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 78/169 (46%), Gaps = 15/169 (8%)

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG-YGFHGYGEEALQLFLEMQES 428
           + ++L++ +SK      ++++F +  + +   W T+I+G      YG     LF EM   
Sbjct: 9   VQSSLIDAFSKNLRFEDAYKVFRDTLSANVYCWNTIIAGALRNQNYG-AVFDLFHEMCNG 67

Query: 429 GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEH-YAC--YVDLLGKSGK 485
             +PD+ T  ++L+AC  A L    E  F  V++ + I    E  + C   VDL  K G 
Sbjct: 68  FQKPDSYTYSSVLAAC--ASL---EELRFGKVVQARVIKCGAEDVFVCTSIVDLYAKCGH 122

Query: 486 IEDACKVVSTMPMKPS----TRILSSLVSACRIHGRLEVAEMLAHQLIE 530
           + +A +V S +   PS    T +LS    +      LE+   + H  +E
Sbjct: 123 MAEAREVFSRIS-NPSVVSWTVMLSGYTKSNDAFSALEIFREMRHSGVE 170


>gi|242076494|ref|XP_002448183.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
 gi|241939366|gb|EES12511.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
          Length = 549

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 173/510 (33%), Positives = 280/510 (54%), Gaps = 25/510 (4%)

Query: 90  PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV---LKAELLAGIISLCSQIGELE 146
           P+   +SW   I      G +  ++ +F  M  C      + A L A + S C+ +G   
Sbjct: 10  PWPPPLSWAHQIRMAAAQGHFRDAISLFLRMRACAAPRSSVPASLPAALKS-CAALGLSA 68

Query: 147 LGRQIHALVIVDGSFELSVFVSTALLDLYSK--CHHW----------------LIALR-V 187
           LG  +HAL I  G+F    F + ALL+LY K  C +                 L ++R V
Sbjct: 69  LGASLHALAIRSGAFA-DRFTANALLNLYCKLPCSYLHSTGVTSVGGTGSSTALESVRKV 127

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F++M+ R+ VSW  ++ GC +   +   + L R M REG +P   TL+ VL   AE  D+
Sbjct: 128 FDEMIERDVVSWNTLVLGCAEEGRHHEALVLVRKMWREGFRPDSFTLSSVLPIFAECADV 187

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
           + G  +HG+A   GFD D  + ++L+ MY  CT   +  ++ F+   V+D ++W+S++ G
Sbjct: 188 KRGSEVHGFAVRNGFDNDVFVGSSLIDMYANCTRTDYSVKV-FDNLPVRDPILWNSVLAG 246

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
            +Q+G + EA+ +F RM    + P  VT  +++  C   + L  G  +H Y+++ G   +
Sbjct: 247 CAQNGSVEEALGIFRRMLQTGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVIRGGFEDN 306

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
           V I ++L++MY KCG I+ +H IF+ M + D VSWT +I GY  HG   EAL LF  M+ 
Sbjct: 307 VFISSSLIDMYCKCGEISIAHHIFDRMCSPDVVSWTAMIMGYALHGPAREALVLFERMEL 366

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487
              +P+ IT LA+L+AC+HAGLV +    F ++     I   +EH A   D+LG++G+++
Sbjct: 367 GNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSDHYGIVPTLEHCAALADILGRAGELD 426

Query: 488 DACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCS 547
           +A   +S M +KP+  + S+L+ ACR+H    +AE +A +++E EP +  ++ +LS + S
Sbjct: 427 EAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNMYS 486

Query: 548 ESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            SG W  A  + + MR KG+ K    S IE
Sbjct: 487 ASGRWNEAAHLRKSMRKKGMKKDPACSWIE 516



 Score =  208 bits (529), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 125/442 (28%), Positives = 232/442 (52%), Gaps = 32/442 (7%)

Query: 25  SNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF-------- 76
           S  A LP+ +K+CA A      G  LH  A++SG+ AD   +N+L+++Y K         
Sbjct: 49  SVPASLPAALKSCA-ALGLSALGASLHALAIRSGAFADRFTANALLNLYCKLPCSYLHST 107

Query: 77  -----------SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
                      +  ES  ++FDEM  RD +SWN+++    + G +  +L + R+M+  GF
Sbjct: 108 GVTSVGGTGSSTALESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALVLVRKMWREGF 167

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
              +  L+ ++ + ++  +++ G ++H   + +G F+  VFV ++L+D+Y+ C     ++
Sbjct: 168 RPDSFTLSSVLPIFAECADVKRGSEVHGFAVRNG-FDNDVFVGSSLIDMYANCTRTDYSV 226

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
           +VF+ + +R+ + W ++++GC  + + +  + +FR M + GV+P  VT + ++  C  L 
Sbjct: 227 KVFDNLPVRDPILWNSVLAGCAQNGSVEEALGIFRRMLQTGVRPVPVTFSSLIPVCGNLA 286

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
            LR GK +H Y    GF+ +  +S++L+ MYC+C E +  A  IF+R    DVV W+++I
Sbjct: 287 SLRFGKQLHAYVIRGGFEDNVFISSSLIDMYCKCGE-ISIAHHIFDRMCSPDVVSWTAMI 345

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA-GL 364
            GY+  G   EA+ LF RM L   +PN +T LA+L++C+    +  G      +    G+
Sbjct: 346 MGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSDHYGI 405

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS-WTTLISGYGFHG---YGEEALQ 420
              +    AL ++  + G +  ++   ++M  +   S W+TL+     H      EE  +
Sbjct: 406 VPTLEHCAALADILGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAK 465

Query: 421 LFLEMQESGVEPDAITVLAILS 442
             +E+     EP +I    +LS
Sbjct: 466 KIMEL-----EPRSIGSHVVLS 482



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 125/230 (54%), Gaps = 7/230 (3%)

Query: 13  LYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISM 72
           ++++   P   ++ +++LP +   CA  +     G ++H  A+++G D D  + +SLI M
Sbjct: 162 MWREGFRPDS-FTLSSVLP-IFAECADVKR----GSEVHGFAVRNGFDNDVFVGSSLIDM 215

Query: 73  YAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELL 132
           YA  ++ + + ++FD +P RD I WNS++    QNG    +L +FR M   G        
Sbjct: 216 YANCTRTDYSVKVFDNLPVRDPILWNSVLAGCAQNGSVEEALGIFRRMLQTGVRPVPVTF 275

Query: 133 AGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV 192
           + +I +C  +  L  G+Q+HA VI  G FE +VF+S++L+D+Y KC    IA  +F++M 
Sbjct: 276 SSLIPVCGNLASLRFGKQLHAYVI-RGGFEDNVFISSSLIDMYCKCGEISIAHHIFDRMC 334

Query: 193 IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
             + VSWTAMI G          + LF  M+    KP  +T   VL AC+
Sbjct: 335 SPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACS 384


>gi|302822082|ref|XP_002992701.1| hypothetical protein SELMODRAFT_135788 [Selaginella moellendorffii]
 gi|300139547|gb|EFJ06286.1| hypothetical protein SELMODRAFT_135788 [Selaginella moellendorffii]
          Length = 941

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 172/497 (34%), Positives = 268/497 (53%), Gaps = 3/497 (0%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G Q+H   + +G D D  + N L+ MY +    + A   F  +  R+  SW  +I+   Q
Sbjct: 440 GRQVHSQMISNGLDGDTYLGNLLVQMYGRCGSLDDARAAFQGIHQRNVFSWTILISLLVQ 499

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           NG     LE+ + M L G          ++  CS  G+L LG+ IH  +   G  E  + 
Sbjct: 500 NGEASEGLELLKSMDLEGTEANKITFISLLGACSVTGDLSLGKTIHERIRTKG-LESDII 558

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
            S ALL++Y+ C     A  VFE+MV R+ VSWT +IS    +      + L+R M++E 
Sbjct: 559 TSNALLNMYTTCESLDEARLVFERMVFRDVVSWTIIISAYAHAGYPLEALQLYRRMEQEF 618

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
            +P  VTL  VL ACA LR L  GKAIH      G + D  +  A++  Y +C EA+  A
Sbjct: 619 SRPDAVTLISVLEACASLRALVEGKAIHERIVASGVETDVFVGTAVVSFYGKC-EAVEDA 677

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
           R +F+R   KD+V W+++I  Y+Q+    +A  L+  M   ++ PN VTL+ +L SC+  
Sbjct: 678 RQVFDRILDKDIVCWNAMIGAYAQNHCEEKAFALYLEMVENQMPPNDVTLITLLDSCSST 737

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC-GSITSSHQIFNEMAARDFVSWTTL 405
             +  G  +H      G     S+ NAL+NMY+KC G++ ++   F  +A+++ VSW+++
Sbjct: 738 CKMERGSSLHREAAARGYLSHTSVVNALINMYAKCCGNLEAAQTAFESVASKNVVSWSSI 797

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           ++ Y  +G  + A  LF  M + GV P+ +T  ++L AC+HAGL  E  + F ++  +  
Sbjct: 798 VAAYARNGEEDRARNLFWTMNQDGVLPNIVTFTSVLHACSHAGLADEGWSYFLSMQGDHH 857

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
           +    EHY C V+LL KSG+++ A   +S MP++P      SL+ AC +H   E   + A
Sbjct: 858 LEPTPEHYGCMVNLLAKSGRVKQAASFMSAMPVQPDASAWRSLLGACEVHTDKEYGALAA 917

Query: 526 HQLIEAEPENAANYTLL 542
            QL++AEP N+A Y LL
Sbjct: 918 KQLLDAEPRNSAAYVLL 934



 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 156/557 (28%), Positives = 260/557 (46%), Gaps = 19/557 (3%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G+  +   L + + ACA A      G Q+H   L SG  A  ++SNSL+ MY K    E 
Sbjct: 5   GVPGDEITLLNAVSACA-ALGDSLQGKQIHARILSSGLGASVLLSNSLVYMYGKCGSVEE 63

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A   FD MP RD ISWN++I  + Q+    ++++++    L G        A +++ C  
Sbjct: 64  ARNAFDRMPERDLISWNAMITVYAQHECGKQAIQLYAYSRLEGTKPDEVTFASLLNACFA 123

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
            G+L+ GR +H   +   SF     V   L+ +YS C     A  VFE     +  +WT 
Sbjct: 124 SGDLKFGRMLHEHFL-GTSFVSDQIVCNGLISMYSDCGSLDDATAVFEWSFRPDVCTWTT 182

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           +I+        +     +  M +EG++   +T   VL  C+ L  L  GK +H  A   G
Sbjct: 183 VIAAYTRHGKLECAFATWSKMHQEGLRSNEITFLTVLDTCSSLEVLETGKHVHRLALGSG 242

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
            DF   +  +L+ MY +C+     AR +F R     V+ WS+ I  Y Q     EA+K F
Sbjct: 243 LDFSLRMENSLISMYGKCSRHPDEAREVFLRISRPSVISWSAFIAAYGQHW---EAIKTF 299

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
             M LE ++PN+ TL ++L +C        G  +H  ++      + ++ NA  ++Y+KC
Sbjct: 300 ELMNLEGVKPNATTLTSVLRACATVGAHEQGRRIHALVLAGPYTQNTTVLNAAASLYAKC 359

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
             +  + ++F+ +  +D VSW  ++S Y   G   +A+ L  +MQ  G  PD IT + IL
Sbjct: 360 SRVADASRVFSSIPCKDAVSWNAIVSAYAKQGLFRDAIFLSRQMQVEGFVPDDITFITIL 419

Query: 442 SACNHAGLVKE---AETLFNNVMKEKKI---ALAIEHY--ACYVDLLGKSGKIEDACKVV 493
            +C+ + L+K+   +++L +      ++    L  + Y     V + G+ G ++DA    
Sbjct: 420 YSCSQSALLKQYGNSKSLTDGRQVHSQMISNGLDGDTYLGNLLVQMYGRCGSLDDARAAF 479

Query: 494 STMPMKP--STRILSSLVSACRIHGRL-EVAEMLAHQLIEAEPENAANYTLLSMVCSESG 550
             +  +   S  IL SL+     +G   E  E+L    +E    N   +  L   CS +G
Sbjct: 480 QGIHQRNVFSWTILISLLVQ---NGEASEGLELLKSMDLEGTEANKITFISLLGACSVTG 536

Query: 551 NWLGAEEVWRVMRAKGL 567
           +    + +   +R KGL
Sbjct: 537 DLSLGKTIHERIRTKGL 553



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 163/350 (46%), Gaps = 8/350 (2%)

Query: 222 MQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTE 281
           M  EGV    +TL   + ACA L D   GK IH      G      LS +L++MY +C  
Sbjct: 1   MDLEGVPGDEITLLNAVSACAALGDSLQGKQIHARILSSGLGASVLLSNSLVYMYGKCG- 59

Query: 282 ALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILS 341
           ++  AR  F+R   +D++ W+++I  Y+Q     +A++L++  RLE  +P+ VT  ++L+
Sbjct: 60  SVEEARNAFDRMPERDLISWNAMITVYAQHECGKQAIQLYAYSRLEGTKPDEVTFASLLN 119

Query: 342 SCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS 401
           +C     L  G  +H + +      D  + N L++MYS CGS+  +  +F      D  +
Sbjct: 120 ACFASGDLKFGRMLHEHFLGTSFVSDQIVCNGLISMYSDCGSLDDATAVFEWSFRPDVCT 179

Query: 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVM 461
           WTT+I+ Y  HG  E A   + +M + G+  + IT L +L  C+   +++  + +    +
Sbjct: 180 WTTVIAAYTRHGKLECAFATWSKMHQEGLRSNEITFLTVLDTCSSLEVLETGKHVHRLAL 239

Query: 462 KEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA 521
               +  ++      + + GK  +  D  + V     +PS    S+ ++A   H   E  
Sbjct: 240 G-SGLDFSLRMENSLISMYGKCSRHPDEAREVFLRISRPSVISWSAFIAAYGQH--WEAI 296

Query: 522 EMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSY 571
           +      +E    NA   T +   C+     +GA E  R + A  L+  Y
Sbjct: 297 KTFELMNLEGVKPNATTLTSVLRACAT----VGAHEQGRRIHALVLAGPY 342


>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 618

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 174/529 (32%), Positives = 295/529 (55%), Gaps = 33/529 (6%)

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A Q+FD++P+ D     S I  +++      +L  F  M+     +    +  I   C+ 
Sbjct: 49  ARQVFDQIPHPDQGVHCSFITAYSRLSLNNEALRTFVSMHQNNVRIVCFTIPPIFKSCAS 108

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW-------------------- 181
           +  +++G+Q+H+LVI  G F  SVF   AL++ Y+K +                      
Sbjct: 109 LLAIDVGKQVHSLVIRYG-FHSSVFCQNALINFYAKINDLGSAELIFDGILVKDTIAYNC 167

Query: 182 -----------LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPT 230
                      L A  +F++M  R+ VSW AMIS    + +Y  G  +F+ MQ E  +P 
Sbjct: 168 LISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEPN 227

Query: 231 RVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIF 290
            +TL  VL  CA+L DL  G  I           +  +S A++ MY +C  A+   R++F
Sbjct: 228 EITLATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCG-AVDDGRLVF 286

Query: 291 ERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLS 350
           +    +DVV WS++I GY+Q+G  +EA++LF  M+  +I+PN VTL+++LS+C +   + 
Sbjct: 287 DHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSVLSACAQLGSVE 346

Query: 351 HGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYG 410
            G  +  Y+   GL  +V + +AL+ MYSKCG+I  + QIF+++  RD V+W ++I G  
Sbjct: 347 TGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMGLA 406

Query: 411 FHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAI 470
            +G+ E+A+ L+  M+E  V+P+ IT + +++AC HAG V+     F ++  +  I+  I
Sbjct: 407 INGFAEDAIALYNRMKEIEVKPNNITFVGLMTACTHAGHVELGLEFFRSMRSDHNISPNI 466

Query: 471 EHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE 530
           EH+AC VDL  +SG++ DA + +  M ++P+  I  +L+SA RIH  +E+AE+   +L+E
Sbjct: 467 EHFACIVDLFCRSGRLIDAYEFICRMEVEPNVVIWGTLLSASRIHLNVELAELAGKKLLE 526

Query: 531 AEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIENE 579
            EP+N+ NY +LS + + +G W  A +V ++M+ K + K+  +S +E E
Sbjct: 527 LEPDNSGNYVILSNIYASAGRWQEALKVRKLMKDKRVQKAAAYSWVEVE 575



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 134/478 (28%), Positives = 239/478 (50%), Gaps = 48/478 (10%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES-------- 81
           +P + K+CA +      G Q+H   ++ G  +     N+LI+ YAK +   S        
Sbjct: 99  IPPIFKSCA-SLLAIDVGKQVHSLVIRYGFHSSVFCQNALINFYAKINDLGSAELIFDGI 157

Query: 82  -----------------------AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFR 118
                                  A +LFD+M  R  +SWN++I+C+ QNG Y +   +F+
Sbjct: 158 LVKDTIAYNCLISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQ 217

Query: 119 EMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKC 178
            M           LA ++S+C+++G+LE+G +I  L   + +   ++ VSTA+L++Y KC
Sbjct: 218 RMQDEMCEPNEITLATVLSICAKLGDLEMGLRIKKLN-DNKNLGSNMIVSTAMLEMYVKC 276

Query: 179 HHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVL 238
                   VF+ M  R+ V+W+AMI+G   +   +  ++LF  M+   +KP  VTL  VL
Sbjct: 277 GAVDDGRLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSVL 336

Query: 239 LACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDV 298
            ACA+L  +  G+ I  Y    G   + ++++AL+ MY +C   +  AR IF++   +D 
Sbjct: 337 SACAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIK-ARQIFDKLPQRDN 395

Query: 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCY 358
           V W+S+I G + +G   +A+ L++RM+   ++PN++T + ++++CT    +  GL     
Sbjct: 396 VTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLMTACTHAGHVELGLEFF-R 454

Query: 359 IMKAGLNFDVSIGN--ALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFH--- 412
            M++  N   +I +   +++++ + G +  +++    M    + V W TL+S    H   
Sbjct: 455 SMRSDHNISPNIEHFACIVDLFCRSGRLIDAYEFICRMEVEPNVVIWGTLLSASRIHLNV 514

Query: 413 GYGEEALQLFLEMQESGVEPDAITVLAILSAC-NHAGLVKEAETLFNNVMKEKKIALA 469
              E A +  LE+     EPD      ILS     AG  +EA  +   +MK+K++  A
Sbjct: 515 ELAELAGKKLLEL-----EPDNSGNYVILSNIYASAGRWQEALKV-RKLMKDKRVQKA 566


>gi|7523419|emb|CAB86438.1| putative protein [Arabidopsis thaliana]
          Length = 1017

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 185/570 (32%), Positives = 319/570 (55%), Gaps = 6/570 (1%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPV-ISN 67
           +TL L++ E+H +G   N+  + S + AC    ++   G ++H + LKS + +  + + N
Sbjct: 230 ETLELFR-EMHMTGPAPNSYTIVSALTACD-GFSYAKLGKEIHASVLKSSTHSSELYVCN 287

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +LI+MY +  K   A ++  +M   D ++WNS+I  + QN  Y  +LE F +M   G   
Sbjct: 288 ALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKS 347

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
               +  II+   ++  L  G ++HA VI  G ++ ++ V   L+D+YSKC+      R 
Sbjct: 348 DEVSMTSIIAASGRLSNLLAGMELHAYVIKHG-WDSNLQVGNTLIDMYSKCNLTCYMGRA 406

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F +M  ++ +SWT +I+G   +  +   ++LFR + ++ ++   + L  +L A + L+ +
Sbjct: 407 FLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSM 466

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
              K IH +    G   D  +   L+ +Y +C    +  R+ FE  K KDVV W+S+I  
Sbjct: 467 LIVKEIHCHILRKGL-LDTVIQNELVDVYGKCRNMGYATRV-FESIKGKDVVSWTSMISS 524

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
            + +G+ SEA++LF RM    +  +SV LL ILS+    S L+ G  +HCY+++ G   +
Sbjct: 525 SALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLE 584

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
            SI  A+++MY+ CG + S+  +F+ +  +  + +T++I+ YG HG G+ A++LF +M+ 
Sbjct: 585 GSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRH 644

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487
             V PD I+ LA+L AC+HAGL+ E       +  E ++    EHY C VD+LG++  + 
Sbjct: 645 ENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVV 704

Query: 488 DACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCS 547
           +A + V  M  +P+  +  +L++ACR H   E+ E+ A +L+E EP+N  N  L+S V +
Sbjct: 705 EAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFA 764

Query: 548 ESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           E G W   E+V   M+A G+ K  G S IE
Sbjct: 765 EQGRWNDVEKVRAKMKASGMEKHPGCSWIE 794



 Score =  222 bits (565), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 154/542 (28%), Positives = 282/542 (52%), Gaps = 29/542 (5%)

Query: 20  PSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKP 79
           P GL S     P+++KACA  +  +  G +LH   +K G  +   I N+L+SMYAK    
Sbjct: 142 PLGLSS----FPALLKACAKLRDIRS-GSELHSLLVKLGYHSTGFIVNALVSMYAKNDDL 196

Query: 80  ESAYQLFDEMPYR-DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISL 138
            +A +LFD    + D + WNSI++ ++ +G  + +LE+FREM++ G    +  +   ++ 
Sbjct: 197 SAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTA 256

Query: 139 CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
           C      +LG++IHA V+   +    ++V  AL+ +Y++C     A R+  QM   + V+
Sbjct: 257 CDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVT 316

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258
           W ++I G + +  Y   ++ F  M   G K   V++T ++ A   L +L  G  +H Y  
Sbjct: 317 WNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVI 376

Query: 259 CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAM 318
             G+D +  +   L+ MY +C    +  R  F R   KD++ W+++I GY+Q+    EA+
Sbjct: 377 KHGWDSNLQVGNTLIDMYSKCNLTCYMGR-AFLRMHDKDLISWTTVIAGYAQNDCHVEAL 435

Query: 319 KLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMY 378
           +LF  +  +R+E + + L +IL + +    +     +HC+I++ GL  D  I N L+++Y
Sbjct: 436 ELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGL-LDTVIQNELVDVY 494

Query: 379 SKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
            KC ++  + ++F  +  +D VSWT++IS    +G   EA++LF  M E+G+  D++ +L
Sbjct: 495 GKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALL 554

Query: 439 AILSACNHAGLVKEAETLFNNVMK-----EKKIALA-IEHYACYVDLLGKSGKIEDACKV 492
            ILSA      + +   +   +++     E  IA+A ++ YAC  DL         + K 
Sbjct: 555 CILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDL--------QSAKA 606

Query: 493 VSTMPMKPSTRILSSLVSACRIHG----RLEVAEMLAHQLIEAEPENAANYTLLSMVCSE 548
           V     +      +S+++A  +HG     +E+ + + H+ +   P++ +   LL   CS 
Sbjct: 607 VFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENV--SPDHISFLALL-YACSH 663

Query: 549 SG 550
           +G
Sbjct: 664 AG 665



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 120/452 (26%), Positives = 230/452 (50%), Gaps = 7/452 (1%)

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
           S  ++FDEMP R   +WN++I  +  NG    +L ++  M + G  L       ++  C+
Sbjct: 97  SQEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACA 156

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE-VSW 199
           ++ ++  G ++H+L++  G +  + F+  AL+ +Y+K      A R+F+    + + V W
Sbjct: 157 KLRDIRSGSELHSLLVKLG-YHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLW 215

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY- 258
            +++S    S      ++LFR M   G  P   T+   L AC      + GK IH     
Sbjct: 216 NSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLK 275

Query: 259 CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAM 318
                 + ++  AL+ MY  C +     RI+ +     DVV W+S+I+GY Q+    EA+
Sbjct: 276 SSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNA-DVVTWNSLIKGYVQNLMYKEAL 334

Query: 319 KLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMY 378
           + FS M     + + V++ +I+++  R S L  G+ +H Y++K G + ++ +GN L++MY
Sbjct: 335 EFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMY 394

Query: 379 SKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
           SKC       + F  M  +D +SWTT+I+GY  +    EAL+LF ++ +  +E D + + 
Sbjct: 395 SKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILG 454

Query: 439 AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPM 498
           +IL A +    +   + +  +++++  +   I++    VD+ GK   +  A +V  ++  
Sbjct: 455 SILRASSVLKSMLIVKEIHCHILRKGLLDTVIQNE--LVDVYGKCRNMGYATRVFESIKG 512

Query: 499 KPSTRILSSLVSACRIHGRLEVAEMLAHQLIE 530
           K      +S++S+  ++G    A  L  +++E
Sbjct: 513 KDVVS-WTSMISSSALNGNESEAVELFRRMVE 543


>gi|334186228|ref|NP_191896.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332646951|gb|AEE80472.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 884

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 185/570 (32%), Positives = 319/570 (55%), Gaps = 6/570 (1%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPV-ISN 67
           +TL L++ E+H +G   N+  + S + AC    ++   G ++H + LKS + +  + + N
Sbjct: 267 ETLELFR-EMHMTGPAPNSYTIVSALTACD-GFSYAKLGKEIHASVLKSSTHSSELYVCN 324

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +LI+MY +  K   A ++  +M   D ++WNS+I  + QN  Y  +LE F +M   G   
Sbjct: 325 ALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKS 384

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
               +  II+   ++  L  G ++HA VI  G ++ ++ V   L+D+YSKC+      R 
Sbjct: 385 DEVSMTSIIAASGRLSNLLAGMELHAYVIKHG-WDSNLQVGNTLIDMYSKCNLTCYMGRA 443

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F +M  ++ +SWT +I+G   +  +   ++LFR + ++ ++   + L  +L A + L+ +
Sbjct: 444 FLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSM 503

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
              K IH +    G   D  +   L+ +Y +C    +  R+ FE  K KDVV W+S+I  
Sbjct: 504 LIVKEIHCHILRKGL-LDTVIQNELVDVYGKCRNMGYATRV-FESIKGKDVVSWTSMISS 561

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
            + +G+ SEA++LF RM    +  +SV LL ILS+    S L+ G  +HCY+++ G   +
Sbjct: 562 SALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLE 621

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
            SI  A+++MY+ CG + S+  +F+ +  +  + +T++I+ YG HG G+ A++LF +M+ 
Sbjct: 622 GSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRH 681

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487
             V PD I+ LA+L AC+HAGL+ E       +  E ++    EHY C VD+LG++  + 
Sbjct: 682 ENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVV 741

Query: 488 DACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCS 547
           +A + V  M  +P+  +  +L++ACR H   E+ E+ A +L+E EP+N  N  L+S V +
Sbjct: 742 EAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFA 801

Query: 548 ESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           E G W   E+V   M+A G+ K  G S IE
Sbjct: 802 EQGRWNDVEKVRAKMKASGMEKHPGCSWIE 831



 Score =  221 bits (563), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 154/542 (28%), Positives = 282/542 (52%), Gaps = 29/542 (5%)

Query: 20  PSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKP 79
           P GL S     P+++KACA  +  +  G +LH   +K G  +   I N+L+SMYAK    
Sbjct: 179 PLGLSS----FPALLKACAKLRDIRS-GSELHSLLVKLGYHSTGFIVNALVSMYAKNDDL 233

Query: 80  ESAYQLFDEMPYR-DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISL 138
            +A +LFD    + D + WNSI++ ++ +G  + +LE+FREM++ G    +  +   ++ 
Sbjct: 234 SAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTA 293

Query: 139 CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
           C      +LG++IHA V+   +    ++V  AL+ +Y++C     A R+  QM   + V+
Sbjct: 294 CDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVT 353

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258
           W ++I G + +  Y   ++ F  M   G K   V++T ++ A   L +L  G  +H Y  
Sbjct: 354 WNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVI 413

Query: 259 CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAM 318
             G+D +  +   L+ MY +C    +  R  F R   KD++ W+++I GY+Q+    EA+
Sbjct: 414 KHGWDSNLQVGNTLIDMYSKCNLTCYMGR-AFLRMHDKDLISWTTVIAGYAQNDCHVEAL 472

Query: 319 KLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMY 378
           +LF  +  +R+E + + L +IL + +    +     +HC+I++ GL  D  I N L+++Y
Sbjct: 473 ELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGL-LDTVIQNELVDVY 531

Query: 379 SKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
            KC ++  + ++F  +  +D VSWT++IS    +G   EA++LF  M E+G+  D++ +L
Sbjct: 532 GKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALL 591

Query: 439 AILSACNHAGLVKEAETLFNNVMK-----EKKIALA-IEHYACYVDLLGKSGKIEDACKV 492
            ILSA      + +   +   +++     E  IA+A ++ YAC  DL         + K 
Sbjct: 592 CILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDL--------QSAKA 643

Query: 493 VSTMPMKPSTRILSSLVSACRIHG----RLEVAEMLAHQLIEAEPENAANYTLLSMVCSE 548
           V     +      +S+++A  +HG     +E+ + + H+ +   P++ +   LL   CS 
Sbjct: 644 VFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENV--SPDHISFLALL-YACSH 700

Query: 549 SG 550
           +G
Sbjct: 701 AG 702



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 129/487 (26%), Positives = 245/487 (50%), Gaps = 8/487 (1%)

Query: 47  GLQLHCTALKSGSDAD-PVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT 105
           G QLH    K+    +   ++  L+ MY K    + A ++FDEMP R   +WN++I  + 
Sbjct: 99  GRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYV 158

Query: 106 QNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSV 165
            NG    +L ++  M + G  L       ++  C+++ ++  G ++H+L++  G +  + 
Sbjct: 159 SNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLG-YHSTG 217

Query: 166 FVSTALLDLYSKCHHWLIALRVFEQMVIRNE-VSWTAMISGCIDSQNYDTGIDLFRAMQR 224
           F+  AL+ +Y+K      A R+F+    + + V W +++S    S      ++LFR M  
Sbjct: 218 FIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHM 277

Query: 225 EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY-CCGFDFDHHLSAALMHMYCECTEAL 283
            G  P   T+   L AC      + GK IH           + ++  AL+ MY  C +  
Sbjct: 278 TGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMP 337

Query: 284 HPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC 343
              RI+ +     DVV W+S+I+GY Q+    EA++ FS M     + + V++ +I+++ 
Sbjct: 338 QAERILRQMNNA-DVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAAS 396

Query: 344 TRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWT 403
            R S L  G+ +H Y++K G + ++ +GN L++MYSKC       + F  M  +D +SWT
Sbjct: 397 GRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWT 456

Query: 404 TLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKE 463
           T+I+GY  +    EAL+LF ++ +  +E D + + +IL A +    +   + +  +++++
Sbjct: 457 TVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRK 516

Query: 464 KKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEM 523
             +   I++    VD+ GK   +  A +V  ++  K      +S++S+  ++G    A  
Sbjct: 517 GLLDTVIQNE--LVDVYGKCRNMGYATRVFESIKGKDVVS-WTSMISSSALNGNESEAVE 573

Query: 524 LAHQLIE 530
           L  +++E
Sbjct: 574 LFRRMVE 580



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 98/317 (30%), Positives = 174/317 (54%), Gaps = 5/317 (1%)

Query: 130 ELLAGIISLCSQIGELELGRQIHALVIVD-GSFELSVFVSTALLDLYSKCHHWLIALRVF 188
           E  A ++ LC +   +  GRQ+H+ +     SFEL  F++  L+ +Y KC     A +VF
Sbjct: 81  EAFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELD-FLAGKLVFMYGKCGSLDDAEKVF 139

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
           ++M  R   +W  MI   + +    + + L+  M+ EGV     +   +L ACA+LRD+R
Sbjct: 140 DEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIR 199

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK-DVVIWSSIIRG 307
           +G  +H      G+     +  AL+ MY +  + L  AR +F+  + K D V+W+SI+  
Sbjct: 200 SGSELHSLLVKLGYHSTGFIVNALVSMYAK-NDDLSAARRLFDGFQEKGDAVLWNSILSS 258

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL-NF 366
           YS SG   E ++LF  M +    PNS T+++ L++C   S+   G  +H  ++K+   + 
Sbjct: 259 YSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSS 318

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           ++ + NAL+ MY++CG +  + +I  +M   D V+W +LI GY  +   +EAL+ F +M 
Sbjct: 319 ELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMI 378

Query: 427 ESGVEPDAITVLAILSA 443
            +G + D +++ +I++A
Sbjct: 379 AAGHKSDEVSMTSIIAA 395


>gi|297813827|ref|XP_002874797.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297320634|gb|EFH51056.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 748

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 167/529 (31%), Positives = 296/529 (55%), Gaps = 3/529 (0%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           LH  AL  G + D  + NS++++Y K  +   A +LFD+M  RD +SWN++I+ F     
Sbjct: 166 LHAFALVYGFECDIAVMNSMLNLYCKCDRVGDAKELFDQMEQRDMVSWNTMISGFAFVAN 225

Query: 110 YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVST 169
               L++   M   G     +     +S+   + +LE+GR +H  ++  G F+  + + T
Sbjct: 226 MSEILKLLYRMRDDGLRPDQQTFGASLSVSGTMCDLEMGRMLHCQIVGTG-FDGDMHLRT 284

Query: 170 ALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKP 229
           AL+ +Y KC     + RV E +  ++ V WT MISG +     +  + +F  M   G   
Sbjct: 285 ALITMYLKCGEEEASYRVLETIPDKDVVCWTVMISGLMRLGRAEKALIVFSEMLHSGSDL 344

Query: 230 TRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARII 289
           +   +  V+ +CA+L     G ++HGY    G+  D     + + MY +C   L  + I+
Sbjct: 345 SSEAIASVVASCAQLGSFDLGASVHGYVLRQGYTLDTPALNSFITMYAKCGH-LDKSLIL 403

Query: 290 FERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP-NSVTLLAILSSCTRQSF 348
           FER   +D+V W++II G++Q GDL +A+ LF  M+ + ++  +S+T++++L +C+    
Sbjct: 404 FERMNERDLVSWNAIISGHAQHGDLCKALLLFEEMKFKTVQQVDSLTVVSLLQACSSAGA 463

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
           L  G  +HC ++++ +     +  AL++MYSKCG + ++ + FN +  +D VSW TLI+G
Sbjct: 464 LPVGRMIHCIVIRSFIRPCTLVDTALVDMYSKCGYLEAAQRCFNSITWKDVVSWGTLIAG 523

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468
           YGFHG G+ AL+++ E    G++P+ +  LA+LS+C+H G+V++   +F++++++  +  
Sbjct: 524 YGFHGKGDIALEIYSEFLHFGMKPNHVIFLAVLSSCSHNGMVQQGLKIFSSMVRDFGVEP 583

Query: 469 AIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
             EH AC VDLL ++ ++EDA K       +PS  +L  ++ A   +G+ EV +++   +
Sbjct: 584 NHEHLACVVDLLCRAKRVEDAFKFYKENFTRPSIDVLGIILDASHANGKTEVEDIICRDM 643

Query: 529 IEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           IE +P +A +Y  L    +    W    E W  MR+ GL K  G+S+IE
Sbjct: 644 IELKPVDAGHYVRLGHSFAAMKRWDDVSESWNQMRSLGLKKLPGWSKIE 692



 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 171/551 (31%), Positives = 281/551 (50%), Gaps = 21/551 (3%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           ++Q L  +   L  + L  +T   PS++KAC   Q    FGL +H   L +G  +D  IS
Sbjct: 27  HKQVLSTFSSML-ANKLLPDTFTFPSLLKACTSLQLLS-FGLSIHQKVLVNGFSSDSYIS 84

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF- 125
           +SL+++YAKF     A ++FDEM  RD + W ++I C+++ G +  +  + +EM   G  
Sbjct: 85  SSLVNLYAKFGLLGHARKVFDEMRDRDVVHWTAMIGCYSRAGIFGEACSLVKEMRFQGIK 144

Query: 126 ---VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL 182
              V   E+L+GI    S+I +L+    +HA  +V G FE  + V  ++L+LY KC    
Sbjct: 145 PSPVTFLEMLSGI----SEITQLQC---LHAFALVYG-FECDIAVMNSMLNLYCKCDRVG 196

Query: 183 IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
            A  +F+QM  R+ VSW  MISG     N    + L   M+ +G++P + T    L    
Sbjct: 197 DAKELFDQMEQRDMVSWNTMISGFAFVANMSEILKLLYRMRDDGLRPDQQTFGASLSVSG 256

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
            + DL  G+ +H      GFD D HL  AL+ MY +C E     R++ E    KDVV W+
Sbjct: 257 TMCDLEMGRMLHCQIVGTGFDGDMHLRTALITMYLKCGEEEASYRVL-ETIPDKDVVCWT 315

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
            +I G  + G   +A+ +FS M     + +S  + ++++SC +      G  VH Y+++ 
Sbjct: 316 VMISGLMRLGRAEKALIVFSEMLHSGSDLSSEAIASVVASCAQLGSFDLGASVHGYVLRQ 375

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
           G   D    N+ + MY+KCG +  S  +F  M  RD VSW  +ISG+  HG   +AL LF
Sbjct: 376 GYTLDTPALNSFITMYAKCGHLDKSLILFERMNERDLVSWNAIISGHAQHGDLCKALLLF 435

Query: 423 LEMQESGVEP-DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
            EM+   V+  D++TV+++L AC+ AG +     +   V++       +   A  VD+  
Sbjct: 436 EEMKFKTVQQVDSLTVVSLLQACSSAGALPVGRMIHCIVIRSFIRPCTLVDTA-LVDMYS 494

Query: 482 KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE--AEPENAANY 539
           K G +E A +  +++  K       +L++    HG+ ++A  +  + +    +P +    
Sbjct: 495 KCGYLEAAQRCFNSITWKDVVS-WGTLIAGYGFHGKGDIALEIYSEFLHFGMKPNHVIFL 553

Query: 540 TLLSMVCSESG 550
            +LS  CS +G
Sbjct: 554 AVLS-SCSHNG 563



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 121/457 (26%), Positives = 234/457 (51%), Gaps = 11/457 (2%)

Query: 97  WNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVI 156
           +NS IN  + +G + + L  F  M     +        ++  C+ +  L  G  IH  V+
Sbjct: 14  FNSHINHLSSHGDHKQVLSTFSSMLANKLLPDTFTFPSLLKACTSLQLLSFGLSIHQKVL 73

Query: 157 VDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQN-YDTG 215
           V+G F    ++S++L++LY+K      A +VF++M  R+ V WTAMI GC      +   
Sbjct: 74  VNG-FSSDSYISSSLVNLYAKFGLLGHARKVFDEMRDRDVVHWTAMI-GCYSRAGIFGEA 131

Query: 216 IDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHM 275
             L + M+ +G+KP+ VT   +L   +E+  L   + +H +A   GF+ D  +  +++++
Sbjct: 132 CSLVKEMRFQGIKPSPVTFLEMLSGISEITQL---QCLHAFALVYGFECDIAVMNSMLNL 188

Query: 276 YCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVT 335
           YC+C + +  A+ +F++ + +D+V W+++I G++   ++SE +KL  RMR + + P+  T
Sbjct: 189 YCKC-DRVGDAKELFDQMEQRDMVSWNTMISGFAFVANMSEILKLLYRMRDDGLRPDQQT 247

Query: 336 LLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA 395
             A LS       L  G  +HC I+  G + D+ +  AL+ MY KCG   +S+++   + 
Sbjct: 248 FGASLSVSGTMCDLEMGRMLHCQIVGTGFDGDMHLRTALITMYLKCGEEEASYRVLETIP 307

Query: 396 ARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAET 455
            +D V WT +ISG    G  E+AL +F EM  SG +  +  + +++++C   G      +
Sbjct: 308 DKDVVCWTVMISGLMRLGRAEKALIVFSEMLHSGSDLSSEAIASVVASCAQLGSFDLGAS 367

Query: 456 LFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIH 515
           +   V+++    L       ++ +  K G ++ +  +   M  +      ++++S    H
Sbjct: 368 VHGYVLRQ-GYTLDTPALNSFITMYAKCGHLDKSLILFERMNERDLVS-WNAIISGHAQH 425

Query: 516 GRLEVAEMLAHQLIEAEPENAANYTLLSMV--CSESG 550
           G L  A +L  ++     +   + T++S++  CS +G
Sbjct: 426 GDLCKALLLFEEMKFKTVQQVDSLTVVSLLQACSSAG 462



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 95/315 (30%), Positives = 162/315 (51%), Gaps = 13/315 (4%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G  LHC  + +G D D  +  +LI+MY K  + E++Y++ + +P +D + W  +I+   +
Sbjct: 264 GRMLHCQIVGTGFDGDMHLRTALITMYLKCGEEEASYRVLETIPDKDVVCWTVMISGLMR 323

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
            G   ++L +F EM   G  L +E +A +++ C+Q+G  +LG  +H  V+  G + L   
Sbjct: 324 LGRAEKALIVFSEMLHSGSDLSSEAIASVVASCAQLGSFDLGASVHGYVLRQG-YTLDTP 382

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
              + + +Y+KC H   +L +FE+M  R+ VSW A+ISG     +    + LF  M+ + 
Sbjct: 383 ALNSFITMYAKCGHLDKSLILFERMNERDLVSWNAIISGHAQHGDLCKALLLFEEMKFKT 442

Query: 227 VKPT-RVTLTIVLLACAELRDLRNGKAIH-----GYAYCCGFDFDHHLSAALMHMYCECT 280
           V+    +T+  +L AC+    L  G+ IH      +   C       +  AL+ MY +C 
Sbjct: 443 VQQVDSLTVVSLLQACSSAGALPVGRMIHCIVIRSFIRPCTL-----VDTALVDMYSKCG 497

Query: 281 EALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAIL 340
             L  A+  F     KDVV W ++I GY   G    A++++S      ++PN V  LA+L
Sbjct: 498 -YLEAAQRCFNSITWKDVVSWGTLIAGYGFHGKGDIALEIYSEFLHFGMKPNHVIFLAVL 556

Query: 341 SSCTRQSFLSHGLGV 355
           SSC+    +  GL +
Sbjct: 557 SSCSHNGMVQQGLKI 571



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 82/172 (47%), Gaps = 1/172 (0%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPY 91
           S+++AC+ A      G  +HC  ++S      ++  +L+ MY+K    E+A + F+ + +
Sbjct: 453 SLLQACSSAGALP-VGRMIHCIVIRSFIRPCTLVDTALVDMYSKCGYLEAAQRCFNSITW 511

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQI 151
           +D +SW ++I  +  +G    +LE++ E    G      +   ++S CS  G ++ G +I
Sbjct: 512 KDVVSWGTLIAGYGFHGKGDIALEIYSEFLHFGMKPNHVIFLAVLSSCSHNGMVQQGLKI 571

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMI 203
            + ++ D   E +      ++DL  +      A + +++   R  +    +I
Sbjct: 572 FSSMVRDFGVEPNHEHLACVVDLLCRAKRVEDAFKFYKENFTRPSIDVLGII 623


>gi|224096616|ref|XP_002310672.1| predicted protein [Populus trichocarpa]
 gi|222853575|gb|EEE91122.1| predicted protein [Populus trichocarpa]
          Length = 551

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 176/532 (33%), Positives = 301/532 (56%), Gaps = 5/532 (0%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G  +H   L +G  ++  +S  LI  Y+K     SA ++FD MP R  +SW++ I+ ++Q
Sbjct: 16  GHLIHNQILTNGFASNIHLSTKLIIFYSKLGDTVSARKVFDRMPERTVVSWSAQISGYSQ 75

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           NG Y  +L +F +M   GF         ++  C+ +  L+ G QI    +    F  ++ 
Sbjct: 76  NGCYQDALLVFLDMLRAGFKANQFTYGSVLRACTGLRCLQRGMQIQG-CLEKSRFASNLI 134

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYD-TGIDLFRAMQRE 225
           V +ALLDL+SKC     A  +F  M  R+ VSW A+I G    Q +      +FR+M +E
Sbjct: 135 VQSALLDLHSKCGKMEDASYLFGMMEERDVVSWNAII-GAYAVQGFSGDSFRMFRSMMQE 193

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
           G+ P   T   VL A     D+     IH      G+     LS +L+  Y +C E+L  
Sbjct: 194 GMSPDLFTFGSVLKASGMASDVIRVCQIHQLIIQLGYGSHISLSGSLIDAYAKC-ESLAS 252

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLS-EAMKLFSRMRLERIEPNSVTLLAILSSCT 344
           A  +++   +KD++  ++++ GY++  + S +A+ LF  ++   ++ + V L ++ + C 
Sbjct: 253 AHCLYKSMPMKDMISCTALMTGYARDSNYSSKALDLFKEIQQMHMKIDDVILCSMFNICA 312

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
             S LS G  +H   +K    +DV++GNAL++MY+K G I  +++ FNEM  ++ +SWT+
Sbjct: 313 NISSLSVGRQIHALALKCKPTYDVAMGNALIDMYAKSGEIKDANRAFNEMEEKNVISWTS 372

Query: 405 LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK 464
           LI+GYG HG+G EA+ LF +M+  G++P+ IT L++L ACNH GL  E    FNN++ + 
Sbjct: 373 LITGYGSHGHGHEAIALFKKMEYEGLKPNDITFLSLLFACNHCGLTGEGWECFNNMISKY 432

Query: 465 KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEML 524
            I    EH++C VDL  + G +E+A  +++ M +KP+  +  +++ AC I+G + +AE  
Sbjct: 433 NILPRAEHFSCMVDLFARGGLLEEAYNLINKMNIKPNASLWGAILGACYIYGNMPLAEEA 492

Query: 525 AHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
           A  L + +PEN+ NY +L+ + + +G+W  A ++ ++M  + L K+ G+S I
Sbjct: 493 AIHLFKMDPENSVNYVVLADIYAAAGSWDNAWKMRKLMEERNLKKAPGYSFI 544



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 107/210 (50%), Gaps = 1/210 (0%)

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
           C E +  + G  IH      GF  + HLS  L+  Y +  + +  AR +F+R   + VV 
Sbjct: 7   CIETKAKKPGHLIHNQILTNGFASNIHLSTKLIIFYSKLGDTV-SARKVFDRMPERTVVS 65

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           WS+ I GYSQ+G   +A+ +F  M     + N  T  ++L +CT    L  G+ +   + 
Sbjct: 66  WSAQISGYSQNGCYQDALLVFLDMLRAGFKANQFTYGSVLRACTGLRCLQRGMQIQGCLE 125

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
           K+    ++ + +AL++++SKCG +  +  +F  M  RD VSW  +I  Y   G+  ++ +
Sbjct: 126 KSRFASNLIVQSALLDLHSKCGKMEDASYLFGMMEERDVVSWNAIIGAYAVQGFSGDSFR 185

Query: 421 LFLEMQESGVEPDAITVLAILSACNHAGLV 450
           +F  M + G+ PD  T  ++L A   A  V
Sbjct: 186 MFRSMMQEGMSPDLFTFGSVLKASGMASDV 215


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 181/544 (33%), Positives = 292/544 (53%), Gaps = 37/544 (6%)

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY--LCG 124
           N+L+  Y+K        + F+++P RD ++WN +I  ++ +G    +++ +  M      
Sbjct: 73  NNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMKDFSS 132

Query: 125 FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSK------- 177
            + +  L+  ++ L S  G + LG+QIH  VI  G FE  + V + LLD+YSK       
Sbjct: 133 NLTRVTLMT-MLKLSSSNGHVSLGKQIHGQVIKLG-FESYLLVGSPLLDMYSKVGCISDA 190

Query: 178 ------------------------CHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYD 213
                                   C     AL++F  M  ++ VSW+AMI G   +    
Sbjct: 191 KKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGME-KDSVSWSAMIKGLAQNGMEK 249

Query: 214 TGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALM 273
             I+ FR M+ EG+K  +     VL AC  L  + +G+ IH            ++ +AL+
Sbjct: 250 EAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALI 309

Query: 274 HMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNS 333
            MYC+C + LH A+ +F+R K K+VV W++++ GY Q+G   EA+K+F  M+   I+P+ 
Sbjct: 310 DMYCKC-KCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDH 368

Query: 334 VTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNE 393
            TL   +S+C   S L  G   H   + AGL   +++ N+L+ +Y KCG I  S ++FNE
Sbjct: 369 YTLGQAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNE 428

Query: 394 MAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEA 453
           M  RD VSWT ++S Y   G   EA+QLF +M + G++PD +T+  ++SAC+ AGLV++ 
Sbjct: 429 MNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKG 488

Query: 454 ETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACR 513
           +  F  ++ E  I  +  HY+C +DL  +SG+IE+A   ++ MP +P     ++L+SACR
Sbjct: 489 QRYFELMINEYGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTLLSACR 548

Query: 514 IHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGF 573
             G LE+ +  A  LIE +P + A YTLLS + +  G W    ++ R M+ K + K  G 
Sbjct: 549 NKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDCVAQLRRGMKEKNVRKEPGQ 608

Query: 574 SRIE 577
           S I+
Sbjct: 609 SWIK 612



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 114/401 (28%), Positives = 192/401 (47%), Gaps = 36/401 (8%)

Query: 40  AQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF----------------------- 76
           +  H   G Q+H   +K G ++  ++ + L+ MY+K                        
Sbjct: 148 SNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLDDRNTVMYNT 207

Query: 77  --------SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
                      E A QLF  M  +D++SW+++I    QNG    ++E FREM + G  + 
Sbjct: 208 LMGGLLACGMIEDALQLFRGME-KDSVSWSAMIKGLAQNGMEKEAIECFREMKIEGLKMD 266

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
                 ++  C  +G +  GRQIHA  I+  + +  ++V +AL+D+Y KC     A  VF
Sbjct: 267 QYPFGSVLPACGGLGAINDGRQIHA-CIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVF 325

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
           ++M  +N VSWTAM+ G   +      + +F  MQR G+ P   TL   + ACA +  L 
Sbjct: 326 DRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLE 385

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
            G   HG A   G      +S +L+ +Y +C +     R +F    V+D V W++++  Y
Sbjct: 386 EGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTR-LFNEMNVRDEVSWTAMVSAY 444

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG-VHCYIMKAGLNFD 367
           +Q G   EA++LF +M    ++P+ VTL  ++S+C+R   +  G       I + G+   
Sbjct: 445 AQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQRYFELMINEYGIVPS 504

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLIS 407
               + +++++S+ G I  +    N M  R D + WTTL+S
Sbjct: 505 NGHYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTLLS 545



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 117/437 (26%), Positives = 207/437 (47%), Gaps = 45/437 (10%)

Query: 151 IHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQ 210
           I+A  + DG  + ++F    LL  YSK  H     R FE++  R+ V+W  +I G   S 
Sbjct: 55  IYARRVFDGIPQPNLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSG 114

Query: 211 NYDTGIDLFRAMQRE-GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS 269
                +  +  M ++     TRVTL  +L   +    +  GK IHG     GF+    + 
Sbjct: 115 LVGAAVKAYNTMMKDFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVG 174

Query: 270 AALMHMYCECTEALHPARIIF----ERTKV--------------------------KDVV 299
           + L+ MY +    +  A+ +F    +R  V                          KD V
Sbjct: 175 SPLLDMYSK-VGCISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSV 233

Query: 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
            WS++I+G +Q+G   EA++ F  M++E ++ +     ++L +C     ++ G  +H  I
Sbjct: 234 SWSAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACI 293

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEAL 419
           ++  L   + +G+AL++MY KC  +  +  +F+ M  ++ VSWT ++ GYG  G   EA+
Sbjct: 294 IRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAV 353

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACY--- 476
           ++FL+MQ SG++PD  T+   +SAC +   ++E           K I   + HY      
Sbjct: 354 KIFLDMQRSGIDPDHYTLGQAISACANISSLEEGSQFHG-----KAITAGLIHYITVSNS 408

Query: 477 -VDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE--AEP 533
            V L GK G I+D+ ++ + M ++      +++VSA    GR   A  L  ++++   +P
Sbjct: 409 LVTLYGKCGDIDDSTRLFNEMNVRDEVS-WTAMVSAYAQFGRAVEAIQLFDKMVQLGLKP 467

Query: 534 ENAANYTLLSMVCSESG 550
           +      ++S  CS +G
Sbjct: 468 DGVTLTGVIS-ACSRAG 483



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 147/337 (43%), Gaps = 36/337 (10%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           +E+   GL  +     SV+ AC       + G Q+H   +++       + ++LI MY K
Sbjct: 256 REMKIEGLKMDQYPFGSVLPACG-GLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCK 314

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
                 A  +FD M  ++ +SW +++  + Q G    ++++F +M   G       L   
Sbjct: 315 CKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQA 374

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           IS C+ I  LE G Q H   I  G     + VS +L+ LY KC     + R+F +M +R+
Sbjct: 375 ISACANISSLEEGSQFHGKAITAGLIHY-ITVSNSLVTLYGKCGDIDDSTRLFNEMNVRD 433

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
           EVSWTAM+S           I LF  M + G+KP  VTLT V+ AC+     R G    G
Sbjct: 434 EVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACS-----RAGLVEKG 488

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
             Y   F+                        +I E   V     +S +I  +S+SG + 
Sbjct: 489 QRY---FEL-----------------------MINEYGIVPSNGHYSCMIDLFSRSGRIE 522

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHG 352
           EAM   + M      P+++    +LS+C  +  L  G
Sbjct: 523 EAMGFINGMPF---RPDAIGWTTLLSACRNKGNLEIG 556


>gi|218526158|sp|Q9M1V3.2|PP296_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g63370
          Length = 960

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 185/570 (32%), Positives = 319/570 (55%), Gaps = 6/570 (1%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPV-ISN 67
           +TL L++ E+H +G   N+  + S + AC    ++   G ++H + LKS + +  + + N
Sbjct: 267 ETLELFR-EMHMTGPAPNSYTIVSALTACD-GFSYAKLGKEIHASVLKSSTHSSELYVCN 324

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +LI+MY +  K   A ++  +M   D ++WNS+I  + QN  Y  +LE F +M   G   
Sbjct: 325 ALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKS 384

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
               +  II+   ++  L  G ++HA VI  G ++ ++ V   L+D+YSKC+      R 
Sbjct: 385 DEVSMTSIIAASGRLSNLLAGMELHAYVIKHG-WDSNLQVGNTLIDMYSKCNLTCYMGRA 443

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F +M  ++ +SWT +I+G   +  +   ++LFR + ++ ++   + L  +L A + L+ +
Sbjct: 444 FLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSM 503

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
              K IH +    G   D  +   L+ +Y +C    +  R+ FE  K KDVV W+S+I  
Sbjct: 504 LIVKEIHCHILRKGL-LDTVIQNELVDVYGKCRNMGYATRV-FESIKGKDVVSWTSMISS 561

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
            + +G+ SEA++LF RM    +  +SV LL ILS+    S L+ G  +HCY+++ G   +
Sbjct: 562 SALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLE 621

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
            SI  A+++MY+ CG + S+  +F+ +  +  + +T++I+ YG HG G+ A++LF +M+ 
Sbjct: 622 GSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRH 681

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487
             V PD I+ LA+L AC+HAGL+ E       +  E ++    EHY C VD+LG++  + 
Sbjct: 682 ENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVV 741

Query: 488 DACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCS 547
           +A + V  M  +P+  +  +L++ACR H   E+ E+ A +L+E EP+N  N  L+S V +
Sbjct: 742 EAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFA 801

Query: 548 ESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           E G W   E+V   M+A G+ K  G S IE
Sbjct: 802 EQGRWNDVEKVRAKMKASGMEKHPGCSWIE 831



 Score =  221 bits (563), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 154/542 (28%), Positives = 282/542 (52%), Gaps = 29/542 (5%)

Query: 20  PSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKP 79
           P GL S     P+++KACA  +  +  G +LH   +K G  +   I N+L+SMYAK    
Sbjct: 179 PLGLSS----FPALLKACAKLRDIRS-GSELHSLLVKLGYHSTGFIVNALVSMYAKNDDL 233

Query: 80  ESAYQLFDEMPYR-DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISL 138
            +A +LFD    + D + WNSI++ ++ +G  + +LE+FREM++ G    +  +   ++ 
Sbjct: 234 SAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTA 293

Query: 139 CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
           C      +LG++IHA V+   +    ++V  AL+ +Y++C     A R+  QM   + V+
Sbjct: 294 CDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVT 353

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258
           W ++I G + +  Y   ++ F  M   G K   V++T ++ A   L +L  G  +H Y  
Sbjct: 354 WNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVI 413

Query: 259 CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAM 318
             G+D +  +   L+ MY +C    +  R  F R   KD++ W+++I GY+Q+    EA+
Sbjct: 414 KHGWDSNLQVGNTLIDMYSKCNLTCYMGR-AFLRMHDKDLISWTTVIAGYAQNDCHVEAL 472

Query: 319 KLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMY 378
           +LF  +  +R+E + + L +IL + +    +     +HC+I++ GL  D  I N L+++Y
Sbjct: 473 ELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGL-LDTVIQNELVDVY 531

Query: 379 SKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
            KC ++  + ++F  +  +D VSWT++IS    +G   EA++LF  M E+G+  D++ +L
Sbjct: 532 GKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALL 591

Query: 439 AILSACNHAGLVKEAETLFNNVMK-----EKKIALA-IEHYACYVDLLGKSGKIEDACKV 492
            ILSA      + +   +   +++     E  IA+A ++ YAC  DL         + K 
Sbjct: 592 CILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDL--------QSAKA 643

Query: 493 VSTMPMKPSTRILSSLVSACRIHG----RLEVAEMLAHQLIEAEPENAANYTLLSMVCSE 548
           V     +      +S+++A  +HG     +E+ + + H+ +   P++ +   LL   CS 
Sbjct: 644 VFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENV--SPDHISFLALL-YACSH 700

Query: 549 SG 550
           +G
Sbjct: 701 AG 702



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 129/487 (26%), Positives = 245/487 (50%), Gaps = 8/487 (1%)

Query: 47  GLQLHCTALKSGSDAD-PVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT 105
           G QLH    K+    +   ++  L+ MY K    + A ++FDEMP R   +WN++I  + 
Sbjct: 99  GRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYV 158

Query: 106 QNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSV 165
            NG    +L ++  M + G  L       ++  C+++ ++  G ++H+L++  G +  + 
Sbjct: 159 SNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLG-YHSTG 217

Query: 166 FVSTALLDLYSKCHHWLIALRVFEQMVIRNE-VSWTAMISGCIDSQNYDTGIDLFRAMQR 224
           F+  AL+ +Y+K      A R+F+    + + V W +++S    S      ++LFR M  
Sbjct: 218 FIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHM 277

Query: 225 EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY-CCGFDFDHHLSAALMHMYCECTEAL 283
            G  P   T+   L AC      + GK IH           + ++  AL+ MY  C +  
Sbjct: 278 TGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMP 337

Query: 284 HPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC 343
              RI+ +     DVV W+S+I+GY Q+    EA++ FS M     + + V++ +I+++ 
Sbjct: 338 QAERILRQMNNA-DVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAAS 396

Query: 344 TRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWT 403
            R S L  G+ +H Y++K G + ++ +GN L++MYSKC       + F  M  +D +SWT
Sbjct: 397 GRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWT 456

Query: 404 TLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKE 463
           T+I+GY  +    EAL+LF ++ +  +E D + + +IL A +    +   + +  +++++
Sbjct: 457 TVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRK 516

Query: 464 KKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEM 523
             +   I++    VD+ GK   +  A +V  ++  K      +S++S+  ++G    A  
Sbjct: 517 GLLDTVIQNE--LVDVYGKCRNMGYATRVFESIKGKDVVS-WTSMISSSALNGNESEAVE 573

Query: 524 LAHQLIE 530
           L  +++E
Sbjct: 574 LFRRMVE 580



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 98/317 (30%), Positives = 174/317 (54%), Gaps = 5/317 (1%)

Query: 130 ELLAGIISLCSQIGELELGRQIHALVIVD-GSFELSVFVSTALLDLYSKCHHWLIALRVF 188
           E  A ++ LC +   +  GRQ+H+ +     SFEL  F++  L+ +Y KC     A +VF
Sbjct: 81  EAFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELD-FLAGKLVFMYGKCGSLDDAEKVF 139

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
           ++M  R   +W  MI   + +    + + L+  M+ EGV     +   +L ACA+LRD+R
Sbjct: 140 DEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIR 199

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK-DVVIWSSIIRG 307
           +G  +H      G+     +  AL+ MY +  + L  AR +F+  + K D V+W+SI+  
Sbjct: 200 SGSELHSLLVKLGYHSTGFIVNALVSMYAK-NDDLSAARRLFDGFQEKGDAVLWNSILSS 258

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL-NF 366
           YS SG   E ++LF  M +    PNS T+++ L++C   S+   G  +H  ++K+   + 
Sbjct: 259 YSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSS 318

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           ++ + NAL+ MY++CG +  + +I  +M   D V+W +LI GY  +   +EAL+ F +M 
Sbjct: 319 ELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMI 378

Query: 427 ESGVEPDAITVLAILSA 443
            +G + D +++ +I++A
Sbjct: 379 AAGHKSDEVSMTSIIAA 395


>gi|297844454|ref|XP_002890108.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335950|gb|EFH66367.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 866

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 186/574 (32%), Positives = 314/574 (54%), Gaps = 10/574 (1%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           ++++ + LY + L   G+  +    P V++ C         G ++H   ++ G + D  +
Sbjct: 175 YFDEAICLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLAR-GREVHVHVVRYGYELDIDV 233

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
            N+LI+MY K    +SA  LFD MP RD ISWN++I+ + +NG     L++F  M   G 
Sbjct: 234 VNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMR--GL 291

Query: 126 VLKAEL--LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
            +  +L  L  +IS C  +G+  LGR IHA VI  G F + + V  +L  +Y     W  
Sbjct: 292 SVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTG-FAVDISVCNSLTQMYLYAGSWRE 350

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
           A ++F +M  ++ VSWT MISG   +   +  ID +R M ++ VKP  +T+  VL ACA 
Sbjct: 351 AEKLFSRMDCKDIVSWTTMISGYEYNFLPEKAIDTYRMMDQDSVKPDEITVAAVLSACAT 410

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
           L DL  G  +H  A          ++  L++MY +C + +  A  IF     K+V+ W+S
Sbjct: 411 LGDLDTGVELHKLAIKARLISYVIVANNLINMYSKC-KCIDKALDIFHNIPRKNVISWTS 469

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           II G   +    EA+  F +M++  ++PN++TL A L++C R   L  G  +H ++++ G
Sbjct: 470 IIAGLRLNNRCFEALIFFRQMKMT-LQPNAITLTAALAACARIGALMCGKEIHAHVLRTG 528

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
           +  D  + NAL++MY +CG +  +   FN    +D  SW  L++GY   G G   ++LF 
Sbjct: 529 VGLDDFLPNALLDMYVRCGRMNIAWNQFNSQK-KDVSSWNILLTGYSERGQGSVVVELFD 587

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS 483
            M ++ V PD IT +++L  C  + +V++    F+  M+E  +   ++HYAC VDLLG++
Sbjct: 588 RMVKARVRPDEITFISLLCGCGKSQMVRQGLMYFSK-MEEYGVTPNLKHYACVVDLLGRA 646

Query: 484 GKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLS 543
           G++++A K +  MP+ P   +  +L++ACRIH  +++ E+ A ++ E +  +   Y LL 
Sbjct: 647 GELQEAHKFIQKMPVTPDPAVWGALLNACRIHHNIDLGELSAQRIFELDKGSVGYYILLC 706

Query: 544 MVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            + ++ G W    +V R+M+  GL+   G S +E
Sbjct: 707 NLYADCGKWREVAKVRRMMKENGLTVDAGCSWVE 740



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 119/406 (29%), Positives = 217/406 (53%), Gaps = 5/406 (1%)

Query: 29  ILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDE 88
           +  ++++ C + + H+  G +++  AL S +     + N+ ++M+ +F     A+ +F +
Sbjct: 96  VFVALVRLCEWKRAHEE-GSKVYSVALSSMNSLSVELGNAFLAMFVRFGNLVDAWYVFGK 154

Query: 89  MPYRDTISWNSIINCFTQNGFYVRSLEMF-REMYLCGFVLKAELLAGIISLCSQIGELEL 147
           M  R+  SWN ++  + + G++  ++ ++ R +++ G          ++  C  I +L  
Sbjct: 155 MSERNLFSWNVLVGGYAKQGYFDEAICLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLAR 214

Query: 148 GRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCI 207
           GR++H  V+  G +EL + V  AL+ +Y KC     A  +F++M  R+ +SW AMISG  
Sbjct: 215 GREVHVHVVRYG-YELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYF 273

Query: 208 DSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
           ++     G+ LF AM+   V P  +TLT V+ AC  L D R G+ IH Y    GF  D  
Sbjct: 274 ENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDIS 333

Query: 268 LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
           +  +L  MY     +   A  +F R   KD+V W+++I GY  +    +A+  +  M  +
Sbjct: 334 VCNSLTQMYLYAG-SWREAEKLFSRMDCKDIVSWTTMISGYEYNFLPEKAIDTYRMMDQD 392

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
            ++P+ +T+ A+LS+C     L  G+ +H   +KA L   V + N L+NMYSKC  I  +
Sbjct: 393 SVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKA 452

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPD 433
             IF+ +  ++ +SWT++I+G   +    EAL  F +M+ + ++P+
Sbjct: 453 LDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFFRQMKMT-LQPN 497



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 119/423 (28%), Positives = 215/423 (50%), Gaps = 5/423 (1%)

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           NG    ++++   M      +  ++   ++ LC      E G ++++ V +     LSV 
Sbjct: 72  NGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAHEEGSKVYS-VALSSMNSLSVE 130

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLF-RAMQRE 225
           +  A L ++ +  + + A  VF +M  RN  SW  ++ G      +D  I L+ R +   
Sbjct: 131 LGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHRMLWVG 190

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
           GVKP   T   VL  C  + DL  G+ +H +    G++ D  +  AL+ MY +C + +  
Sbjct: 191 GVKPDVYTFPCVLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKCGD-VKS 249

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           AR++F+R   +D++ W+++I GY ++G   E +KLF  MR   ++P+ +TL +++S+C  
Sbjct: 250 ARLLFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISACEL 309

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
                 G  +H Y++  G   D+S+ N+L  MY   GS   + ++F+ M  +D VSWTT+
Sbjct: 310 LGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVSWTTM 369

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           ISGY ++   E+A+  +  M +  V+PD ITV A+LSAC   G +     L    +K + 
Sbjct: 370 ISGYEYNFLPEKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARL 429

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
           I+  I      +++  K   I+ A  +   +P K +    +S+++  R++ R   A +  
Sbjct: 430 ISYVIVANN-LINMYSKCKCIDKALDIFHNIPRK-NVISWTSIIAGLRLNNRCFEALIFF 487

Query: 526 HQL 528
            Q+
Sbjct: 488 RQM 490


>gi|223948379|gb|ACN28273.1| unknown [Zea mays]
          Length = 648

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 179/512 (34%), Positives = 285/512 (55%), Gaps = 8/512 (1%)

Query: 72  MYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE- 130
           MY K  + + A ++F  M  R+ +SW +++  F ++G     L +  EM         E 
Sbjct: 1   MYVKCGELDLACEVFGGMRDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEY 60

Query: 131 LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQ 190
            L+  +  C  +G+   G  IH L +  G  E  V V+++L+ +YSK      A RVF+ 
Sbjct: 61  TLSASLKACCVVGDTAAGVGIHGLCVRAGYQEHDV-VASSLVLVYSKGGRIGDARRVFDG 119

Query: 191 MVIRNEV-SWTAMISGCIDSQNYDTGIDLFRAMQR-EGV-KPTRVTLTIVLLACAELRDL 247
             + + + +W AM+SG   + +    + +FR M+R EG  +P   T   +L AC+ L   
Sbjct: 120 AGLGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGAT 179

Query: 248 RNGKAIHGYAYCCGFDFDHH--LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
           R G  +H      GF    +  L+ AL+ MY +C   L  A  +FER + K+V+ W++++
Sbjct: 180 REGAQVHAAMTASGFSTASNAILAGALVDMYVKCRR-LPVAMQVFERLERKNVIQWTAVV 238

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
            G++Q G ++EA++LF R       P+S  L +++      + +  G  VHCY +K    
Sbjct: 239 VGHAQEGQVTEALELFRRFWRSGARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKDPTG 298

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            DVS GN++++MY KCG    + ++F EM A + VSWTT+++G G HG G EA+ LF EM
Sbjct: 299 TDVSAGNSIVDMYLKCGLPDEAERMFREMRAPNVVSWTTMVNGLGKHGLGREAVALFEEM 358

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
           +  GVEPD +T LA+LSAC+HAGLV E    F+ + +++ +    EHYAC VDLLG++G+
Sbjct: 359 RAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGE 418

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV 545
           + +A  ++ TMPM+P+  +  +L+SACR+H  + V       L+  + +N  NY  LS V
Sbjct: 419 LREARDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAMDGDNPVNYVTLSNV 478

Query: 546 CSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +E+G W    +V   MR +GL K  G S +E
Sbjct: 479 LAEAGEWRECHKVRDAMRRRGLKKQGGCSWVE 510



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 105/415 (25%), Positives = 191/415 (46%), Gaps = 21/415 (5%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           N   L + +KAC         G+ +H   +++G     V+++SL+ +Y+K  +   A ++
Sbjct: 58  NEYTLSASLKACCVVGD-TAAGVGIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRV 116

Query: 86  FDEMPYRDTI-SWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE--LLAGIISLCSQI 142
           FD       I +WN++++ +   G    +L +FREM       + +    A ++  CS +
Sbjct: 117 FDGAGLGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGL 176

Query: 143 GELELGRQIHALVIVDG-SFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
           G    G Q+HA +   G S   +  ++ AL+D+Y KC    +A++VFE++  +N + WTA
Sbjct: 177 GATREGAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTA 236

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           ++ G          ++LFR   R G +P    L+ V+   A+   +  G+ +H Y     
Sbjct: 237 VVVGHAQEGQVTEALELFRRFWRSGARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKDP 296

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
              D     +++ MY +C       R +F   +  +VV W++++ G  + G   EA+ LF
Sbjct: 297 TGTDVSAGNSIVDMYLKCGLPDEAER-MFREMRAPNVVSWTTMVNGLGKHGLGREAVALF 355

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNA------LM 375
             MR   +EP+ VT LA+LS+C+       GL   C    + +  D ++         ++
Sbjct: 356 EEMRAGGVEPDEVTYLALLSACSHA-----GLVDECRRYFSCIRRDRTVRPKAEHYACMV 410

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVS-WTTLISGYGFH---GYGEEALQLFLEMQ 426
           ++  + G +  +  +   M     V  W TL+S    H     G EA  + L M 
Sbjct: 411 DLLGRAGELREARDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAMD 465



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 109/244 (44%), Gaps = 11/244 (4%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACA-YAQTHQHFGLQLHCTALKSGSDADPVISN 67
           + L L+++    SG   ++ +L SV+   A +A   Q  G Q+HC  +K  +  D    N
Sbjct: 249 EALELFRR-FWRSGARPDSHVLSSVVGVLADFALVEQ--GRQVHCYGIKDPTGTDVSAGN 305

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           S++ MY K   P+ A ++F EM   + +SW +++N   ++G    ++ +F EM   G   
Sbjct: 306 SIVDMYLKCGLPDEAERMFREMRAPNVVSWTTMVNGLGKHGLGREAVALFEEMRAGGVEP 365

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
                  ++S CS  G ++  R+  + +  D +          ++DL  +      A  +
Sbjct: 366 DEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELREARDL 425

Query: 188 FEQMVIRNEVS-WTAMISGCIDSQNYDTGI---DLFRAMQREGVKPTR-VTLTIVLLACA 242
              M +   V  W  ++S C   ++   G    D+  AM  +G  P   VTL+ VL    
Sbjct: 426 IRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAM--DGDNPVNYVTLSNVLAEAG 483

Query: 243 ELRD 246
           E R+
Sbjct: 484 EWRE 487


>gi|297737195|emb|CBI26396.3| unnamed protein product [Vitis vinifera]
          Length = 667

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 175/560 (31%), Positives = 301/560 (53%), Gaps = 8/560 (1%)

Query: 19  HPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSK 78
           H SG++ +    P V+KACA   + +    +LH   L +G  A   +  +L+ +Y+K   
Sbjct: 20  HTSGVHGSEFTFPFVLKACAKLPSLED-ATKLHSHILLTGFQAHVFVQTALVDVYSKCCC 78

Query: 79  PESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISL 138
             SA  +FD+MP +  +SWNSII+   ++    +S  + ++M L G  L +    G ++ 
Sbjct: 79  FHSARLVFDQMPIKSLVSWNSIISAHCRDFHIDQSFGILKQMQLLGLELSSATFTGFLAS 138

Query: 139 CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
           CS    L  G  IH  +   G  +L + ++ +++ +Y + +    AL VF  +  ++ VS
Sbjct: 139 CS----LPQGLSIHGYITKLG-LDLHLPLANSIMSMYIRLNQIDGALSVFYTLHQKSIVS 193

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258
           WT ++ G + + +      +F  M+ + V P  +    ++  C    +L     +H    
Sbjct: 194 WTIILGGYLSAGDVAKVFAVFNQMRCQCVGPDSIVFVNLISCCKLSGNLLLAMLVHSLLL 253

Query: 259 CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAM 318
             GFD    +   L+ MY +C + L  AR +F+    K V +W+S+I GY+Q G  +EA+
Sbjct: 254 KSGFDHKDPIDNLLVAMYAKCKD-LVSARRVFDAVHEKSVFLWTSMISGYAQFGYPNEAL 312

Query: 319 KLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMY 378
            LF+ +      PN +TL  +LS+C     L  G  +  YI+  GL  D+ +  +L++M+
Sbjct: 313 HLFNMLLRTASRPNELTLATVLSACAEMGSLRMGEEIEQYILLNGLGSDLRVQTSLIHMF 372

Query: 379 SKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ-ESGVEPDAITV 437
            KCGSI  +  +F  +  +D   W+ +I+GY  HG G+EAL LF +MQ E G++PDAI  
Sbjct: 373 CKCGSIKKAQALFERIPNKDLAVWSAMINGYAVHGMGKEALNLFHKMQNEVGIKPDAIVY 432

Query: 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
            ++L AC+H+GL+++    F ++ K+  I  +I+HY+C VDLLG++G +E A + +  MP
Sbjct: 433 TSVLLACSHSGLIEDGLKYFRSMQKDFGIEPSIQHYSCLVDLLGRAGYVELALRTIQEMP 492

Query: 498 MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEE 557
           +    R+ +  +SAC  H  LE+ E  A  L + EP +  N+ L++ + +  G W  A +
Sbjct: 493 VLVQARVWAPFLSACYTHHNLELGEFAAKNLFDLEPRSTGNFVLMTNLYTSMGKWKEAAK 552

Query: 558 VWRVMRAKGLSKSYGFSRIE 577
              ++ A+GL K  G+S+IE
Sbjct: 553 ARSIINARGLVKEPGWSQIE 572


>gi|297830924|ref|XP_002883344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329184|gb|EFH59603.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 824

 Score =  310 bits (794), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 193/575 (33%), Positives = 326/575 (56%), Gaps = 21/575 (3%)

Query: 13  LYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD--ADPVISNSLI 70
           + + E+ PS + S   + P+V  + +  + +  +GL L     K G +   D  + +S I
Sbjct: 209 MMRMEIKPSPV-SFVNVFPAVATSRSIKKANVFYGLML-----KLGDEYVKDLFVVSSAI 262

Query: 71  SMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE 130
           SMYA+    ES+ ++FD    R+   WN++I  + QN   V S+E+F E      ++  E
Sbjct: 263 SMYAELGDLESSRRVFDSCVERNIEVWNTMIGVYVQNDCLVESIELFLEAIGSKEIVSDE 322

Query: 131 ---LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
              LLA   S  S + ++ELGRQ H  V  +   EL + +  +L+ +YS+C     +  V
Sbjct: 323 VTFLLAA--SAVSGLQQVELGRQFHGFVSKNFR-ELPIVIINSLMVMYSRCGFVQKSFGV 379

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F  M  R+ VSW  MIS  + +   D G+ L   MQ++G K   +T+T +L A + LR+ 
Sbjct: 380 FHSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSAASNLRNK 439

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV--KDVVIWSSII 305
             GK  HG+    G  F+  +++ L+ MY + +  +  ++ +FE +    +D   W+S+I
Sbjct: 440 EIGKQTHGFLIRQGIQFEG-MNSYLIDMYAK-SGLIRISQKLFEGSGYAERDQATWNSMI 497

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
            GY+Q+G   E   +F +M  + I PN+VT+ +IL +C++   +  G  +H + ++  L+
Sbjct: 498 SGYTQNGHTEETFLVFRKMLEQNIRPNAVTVASILPACSQVGSVDLGKQLHGFSIRQYLD 557

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            +V + +AL++MYSK G+I  +  +F++   R+ V++TT+I GYG HG GE A+ LFL M
Sbjct: 558 QNVFVASALVDMYSKAGAIKYAENMFSQTKERNSVTYTTMILGYGQHGMGERAISLFLSM 617

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
           QE G++PDAI  +A+LSAC+++GLV E   +F ++ +   I  + EHY C  D+LG+ G+
Sbjct: 618 QELGIKPDAIAFVAVLSACSYSGLVDEGLKIFEDMREVYNIQPSSEHYCCITDMLGRVGR 677

Query: 486 IEDACKVVSTMPMKPS-TRILSSLVSACRIHGRLEVAEMLAHQLIEAEP-ENAANY-TLL 542
           + +A + V  +  + +   +  SL+ +CR+HG LE+AE ++ +L + +  +N + Y  LL
Sbjct: 678 VNEAYEFVKGLGEEGNIAELWGSLLGSCRLHGELELAETVSERLAKLDKGKNFSGYEVLL 737

Query: 543 SMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           S + +E  NW   + V + MR KGL K  G S IE
Sbjct: 738 SNMYAEEQNWKSVDRVRKGMREKGLKKEVGRSGIE 772



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 133/544 (24%), Positives = 261/544 (47%), Gaps = 40/544 (7%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK-FSKPES--------- 81
           S +KACA  +  +  G  +HC  ++   ++  V+ NSL++MY    + P S         
Sbjct: 112 STLKACAETKNLKA-GKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPGSELDCFEYDV 170

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
             ++FD M  ++ ++WN++I+ + + G   R+ E  R+      +++ E+    +S  + 
Sbjct: 171 VRKVFDNMRRKNVVAWNTLISWYVKTG---RNAEACRQF---AIMMRMEIKPSPVSFVNV 224

Query: 142 IGELELGRQIHALVIVDG-------SFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
              +   R I    +  G        +   +FV ++ + +Y++      + RVF+  V R
Sbjct: 225 FPAVATSRSIKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDLESSRRVFDSCVER 284

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLF-RAMQREGVKPTRVTLTIVLLACAELRDLRNGKAI 253
           N   W  MI   + +      I+LF  A+  + +    VT  +   A + L+ +  G+  
Sbjct: 285 NIEVWNTMIGVYVQNDCLVESIELFLEAIGSKEIVSDEVTFLLAASAVSGLQQVELGRQF 344

Query: 254 HGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGD 313
           HG+      +    +  +LM MY  C   +  +  +F   + +DVV W+++I  + Q+G 
Sbjct: 345 HGFVSKNFRELPIVIINSLMVMYSRCG-FVQKSFGVFHSMRERDVVSWNTMISAFVQNGL 403

Query: 314 LSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNA 373
             E + L   M+ +  + + +T+ A+LS+ +       G   H ++++ G+ F+  + + 
Sbjct: 404 DDEGLMLVYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHGFLIRQGIQFE-GMNSY 462

Query: 374 LMNMYSKCGSITSSHQIF--NEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
           L++MY+K G I  S ++F  +  A RD  +W ++ISGY  +G+ EE   +F +M E  + 
Sbjct: 463 LIDMYAKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEETFLVFRKMLEQNIR 522

Query: 432 PDAITVLAILSACNHAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLLGKSGKIED 488
           P+A+TV +IL AC+  G V   + L    ++   ++ + +A    +  VD+  K+G I+ 
Sbjct: 523 PNAVTVASILPACSQVGSVDLGKQLHGFSIRQYLDQNVFVA----SALVDMYSKAGAIKY 578

Query: 489 ACKVVSTMPMKPSTRILSSLVSACRIHGRLE--VAEMLAHQLIEAEPENAANYTLLSMVC 546
           A  + S    + S    ++++     HG  E  ++  L+ Q +  +P+  A   +LS  C
Sbjct: 579 AENMFSQTKERNSV-TYTTMILGYGQHGMGERAISLFLSMQELGIKPDAIAFVAVLS-AC 636

Query: 547 SESG 550
           S SG
Sbjct: 637 SYSG 640



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 113/413 (27%), Positives = 198/413 (47%), Gaps = 27/413 (6%)

Query: 57  SGSDADPVISNSLISMYAKFSK------PESAYQLFDEMPYRDTISWNSIINCFTQNGFY 110
           S + + P ++    S+ ++ SK      P+ A QLFD +P   T+ WN+II  F  N   
Sbjct: 27  SSTFSPPTLTPQTPSIRSRLSKICQEGNPQLARQLFDAIPKPTTVLWNTIIIGFICNNLP 86

Query: 111 VRSLEMFREMYLCGFVLK--AELLAGIISLCSQIGELELGRQIHALVI--VDGSFELSVF 166
             +L  +  M       K  A   +  +  C++   L+ G+ +H  +I  +  S   S  
Sbjct: 87  HEALLFYSRMKKTAPFTKCDAYTYSSTLKACAETKNLKAGKAVHCHLIRCLQNS---SRV 143

Query: 167 VSTALLDLYS----------KCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGI 216
           V  +L+++Y            C  + +  +VF+ M  +N V+W  +IS  + +       
Sbjct: 144 VHNSLMNMYVSCLNAPGSELDCFEYDVVRKVFDNMRRKNVVAWNTLISWYVKTGRNAEAC 203

Query: 217 DLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDF--DHHLSAALMH 274
             F  M R  +KP+ V+   V  A A  R ++     +G     G ++  D  + ++ + 
Sbjct: 204 RQFAIMMRMEIKPSPVSFVNVFPAVATSRSIKKANVFYGLMLKLGDEYVKDLFVVSSAIS 263

Query: 275 MYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF-SRMRLERIEPNS 333
           MY E  + L  +R +F+    +++ +W+++I  Y Q+  L E+++LF   +  + I  + 
Sbjct: 264 MYAELGD-LESSRRVFDSCVERNIEVWNTMIGVYVQNDCLVESIELFLEAIGSKEIVSDE 322

Query: 334 VTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNE 393
           VT L   S+ +    +  G   H ++ K      + I N+LM MYS+CG +  S  +F+ 
Sbjct: 323 VTFLLAASAVSGLQQVELGRQFHGFVSKNFRELPIVIINSLMVMYSRCGFVQKSFGVFHS 382

Query: 394 MAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH 446
           M  RD VSW T+IS +  +G  +E L L  EMQ+ G + D ITV A+LSA ++
Sbjct: 383 MRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSAASN 435



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 105/227 (46%), Gaps = 25/227 (11%)

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP----NSVTLLAILS 341
           AR +F+       V+W++II G+  +    EA+  +SRM+  +  P    ++ T  + L 
Sbjct: 58  ARQLFDAIPKPTTVLWNTIIIGFICNNLPHEALLFYSRMK--KTAPFTKCDAYTYSSTLK 115

Query: 342 SCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS----------HQIF 391
           +C     L  G  VHC++++   N    + N+LMNMY  C +   S           ++F
Sbjct: 116 ACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPGSELDCFEYDVVRKVF 175

Query: 392 NEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVK 451
           + M  ++ V+W TLIS Y   G   EA + F  M    ++P  ++ + +  A   +  +K
Sbjct: 176 DNMRRKNVVAWNTLISWYVKTGRNAEACRQFAIMMRMEIKPSPVSFVNVFPAVATSRSIK 235

Query: 452 EAETLFNNVMKEKK--------IALAIEHYACYVDLLGKSGKIEDAC 490
           +A   +  ++K           ++ AI  YA   D L  S ++ D+C
Sbjct: 236 KANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGD-LESSRRVFDSC 281


>gi|115456537|ref|NP_001051869.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|41469627|gb|AAS07350.1| putative pentatricopeptide repeat domain contianing protein [Oryza
           sativa Japonica Group]
 gi|113550340|dbj|BAF13783.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|215686748|dbj|BAG89598.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 702

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 178/558 (31%), Positives = 298/558 (53%), Gaps = 10/558 (1%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           SG+  N     + + ACA     +  G Q+H  A+++G   D  I + LI MY++     
Sbjct: 108 SGVAPNDFACNAALVACADLGALRA-GEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLP 166

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
           +A ++FD M   D + + S+I+ F +NG +  + E   +M   G       +  I++ C 
Sbjct: 167 AAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACP 226

Query: 141 QIGELELGRQIHALVIVD-GSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSW 199
           ++    LG+QIH  +I   G    SV+ STAL+D YS+   + +A  VF+ +  +N VSW
Sbjct: 227 RV----LGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSW 282

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
            +M+   I     +  + +F  M  EGV P    L+IVL AC  +     G+ +H  A  
Sbjct: 283 CSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIG---LGRQLHCSAIK 339

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
                D  +S AL+ MY   T  +     +  + +  D+V W++ I    Q+G   +A+ 
Sbjct: 340 HDLITDIRVSNALLSMYGR-TGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIA 398

Query: 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           L  +M  E   PN     ++LSSC   + L  G+  HC  +K G + ++  GNAL+NMYS
Sbjct: 399 LLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYS 458

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           KCG + S+   F+ M   D  SW +LI G+  HG   +AL++F +M+ +G++PD  T L 
Sbjct: 459 KCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLG 518

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           +L  CNH+G+V+E E  F  ++ +     A  HYAC +D+LG++G+ ++A ++++ MP +
Sbjct: 519 VLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFE 578

Query: 500 PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVW 559
           P   I  +L+++C++H  L++ ++ A +L+E    ++A+Y L+S + +  G W  A +V 
Sbjct: 579 PDALIWKTLLASCKLHRNLDIGKLAADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVR 638

Query: 560 RVMRAKGLSKSYGFSRIE 577
           R M   G+ K  G S IE
Sbjct: 639 RRMDETGVKKDAGCSWIE 656



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 119/392 (30%), Positives = 201/392 (51%), Gaps = 25/392 (6%)

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D V+    ++   K  +   A  LFD MP ++ ++W S+++ +T+NG    +L MF +M 
Sbjct: 47  DVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMV 106

Query: 122 LCG-----FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYS 176
             G     F   A L+A     C+ +G L  G Q+H+L +  G F    ++ + L+++YS
Sbjct: 107 ESGVAPNDFACNAALVA-----CADLGALRAGEQVHSLAVRAG-FAGDAWIGSCLIEMYS 160

Query: 177 KCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTI 236
           +C     A  VF++M   + V +T++IS    +  ++   +    M ++G+KP   T+T 
Sbjct: 161 RCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTT 220

Query: 237 VLLACAELRDLRNGKAIHGY-AYCCGFDFDH-HLSAALMHMYCECTEALHPARIIFERTK 294
           +L AC  +     G+ IHGY     G      + S AL+  Y    E    A+ +F+   
Sbjct: 221 ILTACPRVL----GQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGE-FKLAKAVFDSLH 275

Query: 295 VKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG 354
            K+VV W S+++ Y + G L EA+++F  M  E ++PN   L  +L +C      S GLG
Sbjct: 276 CKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACG-----SIGLG 330

Query: 355 --VHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFH 412
             +HC  +K  L  D+ + NAL++MY + G +     + N++   D VSWTT IS    +
Sbjct: 331 RQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQN 390

Query: 413 GYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
           G+GE+A+ L  +M   G  P+     ++LS+C
Sbjct: 391 GFGEKAIALLCQMHSEGFTPNGYAFSSVLSSC 422



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 165/309 (53%), Gaps = 15/309 (4%)

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
           AL +F++M  +N V+WT+++SG   +   +  + +F  M   GV P        L+ACA+
Sbjct: 67  ALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACAD 126

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
           L  LR G+ +H  A   GF  D  + + L+ MY  C  +L  A+ +F+R    DVV ++S
Sbjct: 127 LGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCG-SLPAAKEVFDRMDSPDVVGYTS 185

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA- 362
           +I  + ++G+   A +   +M  + ++PN  T+  IL++C R      G  +H Y++K  
Sbjct: 186 LISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPR----VLGQQIHGYLIKKI 241

Query: 363 GLNFD-VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
           GL    V    AL++ YS+ G    +  +F+ +  ++ VSW +++  Y   G  EEALQ+
Sbjct: 242 GLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQV 301

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKE--AETLFNNVMKEKKIALAIEHYACYVDL 479
           F +M   GV+P+   +  +L AC   GL ++     + ++++ + +++ A+      + +
Sbjct: 302 FGDMISEGVDPNEFALSIVLGACGSIGLGRQLHCSAIKHDLITDIRVSNAL------LSM 355

Query: 480 LGKSGKIED 488
            G++G +E+
Sbjct: 356 YGRTGLVEE 364



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 89/184 (48%), Gaps = 9/184 (4%)

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           DV +    +N   K G +  +  +F+ M  ++ V+WT+++SGY  +G  E AL +F +M 
Sbjct: 47  DVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMV 106

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSG 484
           ESGV P+     A L AC   G ++  E + +  ++      A + +  +C +++  + G
Sbjct: 107 ESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRA---GFAGDAWIGSCLIEMYSRCG 163

Query: 485 KIEDACKVVSTMPMKPSTRILSSLVSA-CRIHGRLEV-AEMLAHQLIEAEPENAANYTLL 542
            +  A +V   M   P     +SL+SA CR +G  E+ AE L   L +    N    T +
Sbjct: 164 SLPAAKEVFDRMD-SPDVVGYTSLISAFCR-NGEFELAAEALIQMLKQGLKPNEHTMTTI 221

Query: 543 SMVC 546
              C
Sbjct: 222 LTAC 225


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 186/573 (32%), Positives = 315/573 (54%), Gaps = 17/573 (2%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGS-DADPVISN 67
           + L L+ + L   GL  N   L +  +AC  ++     G  +     K G    D  +  
Sbjct: 135 EALRLFGETLE-EGLLPNAFTLCAATQACFASELFHLAGGAVLGLVFKLGFWGTDVSVGC 193

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +LI M+AK     +  ++FD +  R  + W  +I  + Q+G+   ++E+F +M   GF  
Sbjct: 194 ALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDMLENGFQP 253

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI---A 184
               L+ ++S C+++G   LG+Q+H+L +  G  E    VS  L+D+Y+K H+      A
Sbjct: 254 DQYTLSSMLSACTELGSFRLGQQLHSLALRLG-LESDSCVSCGLVDMYAKSHNGQSLHNA 312

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGI-DLFRAMQREGVKPTRVTLTIVLLACAE 243
             VF +M   N ++WTA++SG +   + D  +  LF  M  EG++P  +T + +L ACA 
Sbjct: 313 REVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACAN 372

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
           L D  +G+ IH +         + +  AL+ MY E + ++  AR  F++   K++V +S 
Sbjct: 373 LGDQDSGRQIHTHCVKSNLADLNVVGNALVSMYAE-SGSIEEARHAFDQLYEKNMVSFSG 431

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIE--PNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
            + G  +S         +   ++ER+E   ++ T  +++S+      L+ G  +H   +K
Sbjct: 432 NLDGDGRS-------NTYQDYQIERMELGISTFTFGSLISAAASVGMLTKGQRLHALSLK 484

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
           AG   D +IGN+L++MYS+CG +  + Q+F+EM   + +SWT++ISG   HGY   AL+L
Sbjct: 485 AGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSMISGLAKHGYAARALEL 544

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
           F +M  +GV+P+ +T +A+LSAC+HAGLVKE +  F  + K   +   +EHYAC VDLLG
Sbjct: 545 FHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHGLIPRMEHYACMVDLLG 604

Query: 482 KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTL 541
           +SG +EDA   ++ MP +    +  +L+ AC+ H  +++ E+ A+ +I+ EP++ A Y L
Sbjct: 605 RSGLVEDALDFINEMPCQVDALVWKTLLGACKTHNNMDIGEIAANHVIQLEPQDPAPYVL 664

Query: 542 LSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFS 574
           LS + +E+G W     +  +MR K L K  G S
Sbjct: 665 LSNLYAEAGLWDQVARIRSLMRDKNLMKEKGLS 697



 Score =  198 bits (504), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 153/539 (28%), Positives = 265/539 (49%), Gaps = 38/539 (7%)

Query: 45  HFGLQLHCTALKSGS--DADPVISNSLISMYAKFSKPESAYQLFDEMP--YRDTISWNSI 100
           H G  L    L++GS  + D V++NSL+++Y+K S   +A  +FD MP   RD +SW ++
Sbjct: 64  HLGRALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAM 123

Query: 101 INCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLC--SQIGELELGRQIHALVIVD 158
            +C ++NG    +L +F E    G +  A  L      C  S++  L  G  +  LV   
Sbjct: 124 ASCLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLA-GGAVLGLVFKL 182

Query: 159 GSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDL 218
           G +   V V  AL+D+++K    +   RVF+ +  R  V WT +I+    S   D  ++L
Sbjct: 183 GFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVEL 242

Query: 219 FRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCE 278
           F  M   G +P + TL+ +L AC EL   R G+ +H  A   G + D  +S  L+ MY +
Sbjct: 243 FLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAK 302

Query: 279 C--TEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL-SEAMKLFSRMRLERIEPNSVT 335
               ++LH AR +F R    +V+ W++++ GY Q G   ++ M LF +M  E I PN +T
Sbjct: 303 SHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHIT 362

Query: 336 LLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA 395
             ++L +C        G  +H + +K+ L     +GNAL++MY++ GSI  +   F+++ 
Sbjct: 363 YSSMLKACANLGDQDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHAFDQLY 422

Query: 396 ARDFVSWTTLISGYG----FHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVK 451
            ++ VS++  + G G    +  Y  E ++L +            T  +++SA    G++ 
Sbjct: 423 EKNMVSFSGNLDGDGRSNTYQDYQIERMELGIS---------TFTFGSLISAAASVGMLT 473

Query: 452 EAETLFNNVMK-----EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILS 506
           + + L    +K     ++ I  ++      V +  + G + DAC+V   M    +    +
Sbjct: 474 KGQRLHALSLKAGFGSDRAIGNSL------VSMYSRCGYLVDACQVFDEMN-DHNVISWT 526

Query: 507 SLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLSMVCSESGNWLGAEEVWRVMR 563
           S++S    HG    A  L H +I A  +P +     +LS  CS +G     +E +R+M+
Sbjct: 527 SMISGLAKHGYAARALELFHDMIAAGVKPNDVTYIAVLS-ACSHAGLVKEGKEHFRMMQ 584



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 145/265 (54%), Gaps = 19/265 (7%)

Query: 246 DLRNGKAIHGYAYCCG--FDFDHHLSAALMHMYCECTEALHPARIIFERTKV--KDVVIW 301
           D+  G+A+ G+    G   + D  ++ +L+ +Y +C+ A+  AR +F+   V  +D+V W
Sbjct: 62  DIHLGRALQGHLLRTGSLLETDAVVANSLLTLYSKCS-AVAAARSVFDGMPVGLRDLVSW 120

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC-TRQSFLSHGLGVHCYIM 360
           +++    S++G  +EA++LF     E + PN+ TL A   +C   + F   G  V   + 
Sbjct: 121 TAMASCLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVF 180

Query: 361 KAGL-NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEAL 419
           K G    DVS+G AL++M++K G + +  ++F+ +  R  V WT LI+ Y   GY +EA+
Sbjct: 181 KLGFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAV 240

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC---- 475
           +LFL+M E+G +PD  T+ ++LSAC   G  +  + L +  ++     L +E  +C    
Sbjct: 241 ELFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALR-----LGLESDSCVSCG 295

Query: 476 YVDLLGKS---GKIEDACKVVSTMP 497
            VD+  KS     + +A +V + MP
Sbjct: 296 LVDMYAKSHNGQSLHNAREVFNRMP 320


>gi|125534384|gb|EAY80932.1| hypothetical protein OsI_36110 [Oryza sativa Indica Group]
          Length = 770

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 172/526 (32%), Positives = 290/526 (55%), Gaps = 14/526 (2%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           +H    K+G+ AD  ++ SL++ Y +      A +LFD MP R+ ++W +++  +T N  
Sbjct: 100 VHGHMAKTGAGADMFVATSLVNAYMRCGAARDARRLFDGMPERNVVTWTALVTGYTLNSQ 159

Query: 110 YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVST 169
               LE+F EM   G       L   ++ C    +++LG+Q+H   I  G+  ++  +  
Sbjct: 160 PALGLEVFVEMLEMGRYPSHYTLGATLNACLASCDVDLGKQVHGYAIKYGAESITS-MGN 218

Query: 170 ALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCI-DSQNYDTGIDLFRAMQREGVK 228
           +L  LY+K      ALR F ++  +N ++WT MIS C  D +  + G+ LF  M  +GV 
Sbjct: 219 SLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAEDEECVELGLSLFIDMLMDGVM 278

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
           P   TLT V+  C    DL  GK +  +++  G + +  +  + M++Y    E     R+
Sbjct: 279 PNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRL 338

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLS-----------EAMKLFSRMRLERIEPNSVTLL 337
            FE+ +   ++ W+++I GY+Q  D +           +A+ +F  ++   ++P+  T  
Sbjct: 339 -FEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFS 397

Query: 338 AILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR 397
           +ILS C+    L  G  +H   +K+G   DV + +AL+NMY+KCG I  +++ F EM  R
Sbjct: 398 SILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTR 457

Query: 398 DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLF 457
            FV+WT++ISGY  HG  +EA+QLF EM+ +GV P+ IT +++LSAC++AGLV+EAE  F
Sbjct: 458 TFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYF 517

Query: 458 NNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGR 517
           + + KE  I   ++HY C +D+  + G++EDA   +     +P+  I SSLV+ CR HG 
Sbjct: 518 DMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGN 577

Query: 518 LEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMR 563
           +E+A   A +L+E +P+    Y LL  +   +  W     V ++M+
Sbjct: 578 MELAFYAADKLLELKPKGIETYILLLNMYISTERWQDVARVRKLMK 623



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 121/434 (27%), Positives = 213/434 (49%), Gaps = 24/434 (5%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           E+   G Y +   L + + AC  A      G Q+H  A+K G+++   + NSL S+YAK 
Sbjct: 169 EMLEMGRYPSHYTLGATLNAC-LASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKL 227

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVR-SLEMFREMYLCGFVLKAELLAGI 135
              +SA + F  +P ++ I+W ++I+   ++   V   L +F +M + G +     L  +
Sbjct: 228 GSLDSALRAFWRIPEKNVITWTTMISACAEDEECVELGLSLFIDMLMDGVMPNEFTLTSV 287

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           +SLC    +L LG+Q+ A     G  E ++ V  + + LY +      A+R+FEQM   +
Sbjct: 288 MSLCGTRLDLNLGKQVQAFSFKIGC-ETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDAS 346

Query: 196 EVSWTAMISG---CIDSQNYD--------TGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
            ++W AMISG    +DS   D          + +FR ++R  +KP   T + +L  C+ +
Sbjct: 347 IITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAM 406

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
             L  G+ IH      GF  D  +++AL++MY +C   +  A   F     +  V W+S+
Sbjct: 407 MALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCG-CIQDANKAFLEMPTRTFVTWTSM 465

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCY-IMKAG 363
           I GYSQ G   EA++LF  MRL  + PN +T +++LS+C+    +      H + +MK  
Sbjct: 466 ISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEE--AEHYFDMMKKE 523

Query: 364 LNFDVSIGN--ALMNMYSKCGSITSSHQIFNEMA-ARDFVSWTTLISGYGFHGYGEEAL- 419
              +  + +   +++M+ + G +  +           +   W++L++G   HG  E A  
Sbjct: 524 YCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFY 583

Query: 420 --QLFLEMQESGVE 431
                LE++  G+E
Sbjct: 584 AADKLLELKPKGIE 597



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 114/224 (50%), Gaps = 2/224 (0%)

Query: 222 MQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTE 281
           M  EG          +L  C E+  L   +A+HG+    G   D  ++ +L++ Y  C  
Sbjct: 69  MLTEGKAVQSAMYVPLLHRCVEMGSLGAARAVHGHMAKTGAGADMFVATSLVNAYMRCGA 128

Query: 282 ALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILS 341
           A   AR +F+    ++VV W++++ GY+ +   +  +++F  M      P+  TL A L+
Sbjct: 129 A-RDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLN 187

Query: 342 SCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS 401
           +C     +  G  VH Y +K G     S+GN+L ++Y+K GS+ S+ + F  +  ++ ++
Sbjct: 188 ACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVIT 247

Query: 402 WTTLISGYGFHGYGEE-ALQLFLEMQESGVEPDAITVLAILSAC 444
           WTT+IS         E  L LF++M   GV P+  T+ +++S C
Sbjct: 248 WTTMISACAEDEECVELGLSLFIDMLMDGVMPNEFTLTSVMSLC 291



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 4/132 (3%)

Query: 313 DLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN 372
           D+ EAM + +    E     S   + +L  C     L     VH ++ K G   D+ +  
Sbjct: 62  DVQEAMTMLT----EGKAVQSAMYVPLLHRCVEMGSLGAARAVHGHMAKTGAGADMFVAT 117

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
           +L+N Y +CG+   + ++F+ M  R+ V+WT L++GY  +      L++F+EM E G  P
Sbjct: 118 SLVNAYMRCGAARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYP 177

Query: 433 DAITVLAILSAC 444
              T+ A L+AC
Sbjct: 178 SHYTLGATLNAC 189



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 112/232 (48%), Gaps = 5/232 (2%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           Q L +++ +L  S +  +     S++  C+     +  G Q+H   +KSG  +D V++++
Sbjct: 376 QALTIFR-DLKRSVMKPDLFTFSSILSVCSAMMALEQ-GEQIHAQTIKSGFLSDVVVNSA 433

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           L++MY K    + A + F EMP R  ++W S+I+ ++Q+G    ++++F EM L G    
Sbjct: 434 LVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPN 493

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
                 ++S CS  G +E       ++  +   E  V     ++D++ +      A    
Sbjct: 494 EITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFI 553

Query: 189 EQMVIR-NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLL 239
           ++     NE  W+++++GC    N +  +  + A +   +KP  +   I+LL
Sbjct: 554 KRTGFEPNEAIWSSLVAGCRSHGNME--LAFYAADKLLELKPKGIETYILLL 603


>gi|125542314|gb|EAY88453.1| hypothetical protein OsI_09918 [Oryza sativa Indica Group]
          Length = 781

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 176/559 (31%), Positives = 301/559 (53%), Gaps = 6/559 (1%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
            G   +    P V+K CA        G   H   +K G + D    NSL++ YAK    E
Sbjct: 101 DGARPDRFTFPVVVKCCARLGGLDE-GRAAHGMVIKLGLEHDVYTCNSLVAFYAKLGLVE 159

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL--KAELLAGIISL 138
            A ++FD MP RD ++WN +++ +  NG    +L  F+EM+    V      ++A + + 
Sbjct: 160 DAERVFDGMPVRDIVTWNIMVDGYVSNGLGSLALACFQEMHDALEVQHDSVGIIAALAAC 219

Query: 139 CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
           C +   ++ G++IH  VI  G  E  + V T+LLD+Y KC     A  VF  M +R  V+
Sbjct: 220 CLEFSSMQ-GKEIHGYVIRHG-LEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLRTVVT 277

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258
           W  MI G   ++  D   D F  M+ EG++   VT   +L ACA+      G+++HGY  
Sbjct: 278 WNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVV 337

Query: 259 CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAM 318
              F     L  AL+ MY +  + +  +  IF +   K +V W+++I  Y      +EA+
Sbjct: 338 RRQFLPHVVLETALLEMYGKVGK-VESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAI 396

Query: 319 KLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMY 378
            LF  +  + + P+  T+  ++ +      L H   +H YI+  G   +  I NA+++MY
Sbjct: 397 TLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMNAVLHMY 456

Query: 379 SKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
           ++ G + +S +IF++M ++D +SW T+I GY  HG G+ AL++F EM+ +G++P+  T +
Sbjct: 457 ARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFV 516

Query: 439 AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPM 498
           ++L+AC+ +GLV E    FN +++E  +   IEHY C  DLLG+ G + +  + + +MP+
Sbjct: 517 SVLTACSVSGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLREVLQFIESMPI 576

Query: 499 KPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEV 558
            P++R+  SL++A R    +++AE  A ++ + E +N   Y +LS + +++G W   E V
Sbjct: 577 DPTSRVWGSLLTASRNQNDIDIAEYAAERIFQLEHDNTGCYIVLSSMYADAGRWEDVERV 636

Query: 559 WRVMRAKGLSKSYGFSRIE 577
             +M+ KGL ++   S +E
Sbjct: 637 RLLMKEKGLRRTEPISLVE 655



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 153/300 (51%), Gaps = 5/300 (1%)

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           MI G  D+      +  +R M  +G +P R T  +V+  CA L  L  G+A HG     G
Sbjct: 78  MIRGFADAGLPAGALAAYRGMLEDGARPDRFTFPVVVKCCARLGGLDEGRAAHGMVIKLG 137

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
            + D +   +L+  Y +    +  A  +F+   V+D+V W+ ++ GY  +G  S A+  F
Sbjct: 138 LEHDVYTCNSLVAFYAKLG-LVEDAERVFDGMPVRDIVTWNIMVDGYVSNGLGSLALACF 196

Query: 322 SRMR--LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
             M   LE ++ +SV ++A L++C  +     G  +H Y+++ GL  D+ +G +L++MY 
Sbjct: 197 QEMHDALE-VQHDSVGIIAALAACCLEFSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYC 255

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           KCG +  +  +F  M  R  V+W  +I GY  +   +EA   F++M+  G++ + +T + 
Sbjct: 256 KCGEVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTAIN 315

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           +L+AC          ++   V++ + +   +   A  +++ GK GK+E + K+   +  K
Sbjct: 316 LLAACAQTESSLYGRSVHGYVVRRQFLPHVVLETA-LLEMYGKVGKVESSEKIFGKIANK 374



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 105/207 (50%), Gaps = 8/207 (3%)

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVH 356
           D  + + +IRG++ +G  + A+  +  M  +   P+  T   ++  C R   L  G   H
Sbjct: 71  DAFLHNVMIRGFADAGLPAGALAAYRGMLEDGARPDRFTFPVVVKCCARLGGLDEGRAAH 130

Query: 357 CYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGE 416
             ++K GL  DV   N+L+  Y+K G +  + ++F+ M  RD V+W  ++ GY  +G G 
Sbjct: 131 GMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIVTWNIMVDGYVSNGLGS 190

Query: 417 EALQLFLEMQES-GVEPDAITVLAILSACNHAGLVKEAETLFNNVMK---EKKIALAIEH 472
            AL  F EM ++  V+ D++ ++A L+AC       + + +   V++   E+ I +    
Sbjct: 191 LALACFQEMHDALEVQHDSVGIIAALAACCLEFSSMQGKEIHGYVIRHGLEQDIKVG--- 247

Query: 473 YACYVDLLGKSGKIEDACKVVSTMPMK 499
               +D+  K G++  A  V +TMP++
Sbjct: 248 -TSLLDMYCKCGEVAYARSVFATMPLR 273


>gi|108712052|gb|ABF99847.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1221

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 178/558 (31%), Positives = 298/558 (53%), Gaps = 10/558 (1%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           SG+  N     + + ACA     +  G Q+H  A+++G   D  I + LI MY++     
Sbjct: 35  SGVAPNDFACNAALVACADLGALRA-GEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLP 93

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
           +A ++FD M   D + + S+I+ F +NG +  + E   +M   G       +  I++ C 
Sbjct: 94  AAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACP 153

Query: 141 QIGELELGRQIHALVIVD-GSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSW 199
           ++    LG+QIH  +I   G    SV+ STAL+D YS+   + +A  VF+ +  +N VSW
Sbjct: 154 RV----LGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSW 209

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
            +M+   I     +  + +F  M  EGV P    L+IVL AC  +     G+ +H  A  
Sbjct: 210 CSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIG---LGRQLHCSAIK 266

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
                D  +S AL+ MY   T  +     +  + +  D+V W++ I    Q+G   +A+ 
Sbjct: 267 HDLITDIRVSNALLSMYGR-TGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIA 325

Query: 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           L  +M  E   PN     ++LSSC   + L  G+  HC  +K G + ++  GNAL+NMYS
Sbjct: 326 LLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYS 385

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           KCG + S+   F+ M   D  SW +LI G+  HG   +AL++F +M+ +G++PD  T L 
Sbjct: 386 KCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLG 445

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           +L  CNH+G+V+E E  F  ++ +     A  HYAC +D+LG++G+ ++A ++++ MP +
Sbjct: 446 VLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFE 505

Query: 500 PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVW 559
           P   I  +L+++C++H  L++ ++ A +L+E    ++A+Y L+S + +  G W  A +V 
Sbjct: 506 PDALIWKTLLASCKLHRNLDIGKLAADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVR 565

Query: 560 RVMRAKGLSKSYGFSRIE 577
           R M   G+ K  G S IE
Sbjct: 566 RRMDETGVKKDAGCSWIE 583



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 112/365 (30%), Positives = 190/365 (52%), Gaps = 25/365 (6%)

Query: 89  MPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG-----FVLKAELLAGIISLCSQIG 143
           MP ++ ++W S+++ +T+NG    +L MF +M   G     F   A L+A     C+ +G
Sbjct: 1   MPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVA-----CADLG 55

Query: 144 ELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMI 203
            L  G Q+H+L +  G F    ++ + L+++YS+C     A  VF++M   + V +T++I
Sbjct: 56  ALRAGEQVHSLAVRAG-FAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLI 114

Query: 204 SGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY-AYCCGF 262
           S    +  ++   +    M ++G+KP   T+T +L AC  +     G+ IHGY     G 
Sbjct: 115 SAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVL----GQQIHGYLIKKIGL 170

Query: 263 DFDH-HLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
                + S AL+  Y    E    A+ +F+    K+VV W S+++ Y + G L EA+++F
Sbjct: 171 RSQSVYSSTALIDFYSRNGE-FKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVF 229

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG--VHCYIMKAGLNFDVSIGNALMNMYS 379
             M  E ++PN   L  +L +C      S GLG  +HC  +K  L  D+ + NAL++MY 
Sbjct: 230 GDMISEGVDPNEFALSIVLGACG-----SIGLGRQLHCSAIKHDLITDIRVSNALLSMYG 284

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           + G +     + N++   D VSWTT IS    +G+GE+A+ L  +M   G  P+     +
Sbjct: 285 RTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSS 344

Query: 440 ILSAC 444
           +LS+C
Sbjct: 345 VLSSC 349



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 159/302 (52%), Gaps = 15/302 (4%)

Query: 191 MVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNG 250
           M  +N V+WT+++SG   +   +  + +F  M   GV P        L+ACA+L  LR G
Sbjct: 1   MPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAG 60

Query: 251 KAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQ 310
           + +H  A   GF  D  + + L+ MY  C  +L  A+ +F+R    DVV ++S+I  + +
Sbjct: 61  EQVHSLAVRAGFAGDAWIGSCLIEMYSRCG-SLPAAKEVFDRMDSPDVVGYTSLISAFCR 119

Query: 311 SGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA-GLNFD-V 368
           +G+   A +   +M  + ++PN  T+  IL++C R      G  +H Y++K  GL    V
Sbjct: 120 NGEFELAAEALIQMLKQGLKPNEHTMTTILTACPR----VLGQQIHGYLIKKIGLRSQSV 175

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
               AL++ YS+ G    +  +F+ +  ++ VSW +++  Y   G  EEALQ+F +M   
Sbjct: 176 YSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISE 235

Query: 429 GVEPDAITVLAILSACNHAGLVKE--AETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
           GV+P+   +  +L AC   GL ++     + ++++ + +++ A+      + + G++G +
Sbjct: 236 GVDPNEFALSIVLGACGSIGLGRQLHCSAIKHDLITDIRVSNAL------LSMYGRTGLV 289

Query: 487 ED 488
           E+
Sbjct: 290 EE 291



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 128/248 (51%), Gaps = 31/248 (12%)

Query: 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV 355
           K+VV W+S++ GY+++G    A+ +F+ M    + PN     A L +C     L  G  V
Sbjct: 4   KNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAGEQV 63

Query: 356 HCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYG 415
           H   ++AG   D  IG+ L+ MYS+CGS+ ++ ++F+ M + D V +T+LIS +  +G  
Sbjct: 64  HSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEF 123

Query: 416 EEALQLFLEMQESGVEPDAITVLAILSACN-------HAGLVKE----AETLFNNVM--- 461
           E A +  ++M + G++P+  T+  IL+AC        H  L+K+    +++++++     
Sbjct: 124 ELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGYLIKKIGLRSQSVYSSTALID 183

Query: 462 -----KEKKIALA---------IEHYACYVDLLGKSGKIEDACKVVSTM---PMKPSTRI 504
                 E K+A A         +  +   + L  + G++E+A +V   M    + P+   
Sbjct: 184 FYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFA 243

Query: 505 LSSLVSAC 512
           LS ++ AC
Sbjct: 244 LSIVLGAC 251



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 9/157 (5%)

Query: 394 MAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEA 453
           M  ++ V+WT+++SGY  +G  E AL +F +M ESGV P+     A L AC   G ++  
Sbjct: 1   MPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAG 60

Query: 454 ETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSA 511
           E + +  ++      A + +  +C +++  + G +  A +V   M   P     +SL+SA
Sbjct: 61  EQVHSLAVRA---GFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMD-SPDVVGYTSLISA 116

Query: 512 -CRIHGRLEV-AEMLAHQLIEAEPENAANYTLLSMVC 546
            CR +G  E+ AE L   L +    N    T +   C
Sbjct: 117 FCR-NGEFELAAEALIQMLKQGLKPNEHTMTTILTAC 152


>gi|449475590|ref|XP_004154496.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g09040, mitochondrial-like [Cucumis sativus]
          Length = 974

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 183/548 (33%), Positives = 302/548 (55%), Gaps = 5/548 (0%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPY 91
           S+  ACA +  + +FG QLH   +K+   ++  ++N+L+ MYAK    + A + F+ M  
Sbjct: 415 SIFSACA-SLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEARKQFELMKI 473

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQI 151
            D +SWN+II  + Q  +   +  MFR M   G +     LA I+S C+ + EL+ G+Q 
Sbjct: 474 HDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQC 533

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQN 211
           H L++  G  + S    ++L+D+Y KC   L A  VF  M  RN VS  A+I+G     +
Sbjct: 534 HCLLVKVG-LDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPSRNVVSVNALIAG-YTMGH 591

Query: 212 YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGF-DFDHHLSA 270
            +  I LF+ +Q  G+KPT VT   +L  C     L  G+ IHG     GF      +  
Sbjct: 592 LEEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCV 651

Query: 271 ALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE 330
           +L+ +Y      +    +  E    K +V+W+++I GY+Q     +A++ +  MR + I 
Sbjct: 652 SLLCLYMNSQRFVDSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNIL 711

Query: 331 PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQI 390
           P+     ++L +C   S L +G  +H  I   G N D    ++L++MY+KCG +  S Q+
Sbjct: 712 PDQAAFASVLRACAGMSSLQNGQEIHSLIFHTGFNMDEVTCSSLIDMYAKCGDVKGSLQV 771

Query: 391 FNEMAARD-FVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL 449
           F EM  R+  +SW ++I G   +GY EEAL++F +M++  + PD +T L +LSAC+HAG 
Sbjct: 772 FREMPRRNNVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSACSHAGR 831

Query: 450 VKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLV 509
           V E   +F+ ++   K+   ++H  C VD+LG+ G + +A + ++ +  K    + S+L+
Sbjct: 832 VSEGRKVFDLMVNNYKLQPRVDHLGCMVDILGRWGFLNEAEEFINKLGCKADPMLWSTLL 891

Query: 510 SACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSK 569
            ACR HG     +  A +L+E +P+++++Y LLS + +ES NW GA  + R M+ KG+ K
Sbjct: 892 GACRKHGDEVRGKRAADKLMELKPQSSSSYVLLSSIYAESENWSGAVSLRREMKLKGVKK 951

Query: 570 SYGFSRIE 577
             G+S IE
Sbjct: 952 LPGYSWIE 959



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 159/572 (27%), Positives = 280/572 (48%), Gaps = 19/572 (3%)

Query: 1   MVSKH----FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALK 56
           M+S H    F E+ +  +  EL  +GL +  + L SV+ A A + +  ++G  +H  A K
Sbjct: 280 MISGHAKRGFAEEAISFF-LELKKTGLKATRSSLGSVLSAIA-SLSMLNYGSMVHAQATK 337

Query: 57  SGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEM 116
            G D +  + ++L++MYAK SK ++A Q+F+ +  R+ + WN+++  F QNG     +E 
Sbjct: 338 EGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEF 397

Query: 117 FREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYS 176
           F  M   G          I S C+ +  L  G Q+H  V++   F  ++FV+ AL+D+Y+
Sbjct: 398 FSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHT-VMIKNKFASNLFVANALVDMYA 456

Query: 177 KCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTI 236
           K      A + FE M I + VSW A+I G +  +  D    +FR M   GV P  V+L  
Sbjct: 457 KSGALKEARKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLAS 516

Query: 237 VLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK 296
           ++ ACA +++L+ G+  H      G D      ++L+ MY +C   L  AR +F     +
Sbjct: 517 IVSACANVQELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVL-AARDVFYSMPSR 575

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVH 356
           +VV  +++I GY+  G L EA+ LF  +++  ++P  VT   +L  C     L+ G  +H
Sbjct: 576 NVVSVNALIAGYTM-GHLEEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIH 634

Query: 357 CYIMKAG-LNFDVSIGNALMNMYSKCGSITSSHQIFNEMA-ARDFVSWTTLISGYGFHGY 414
             +MK G L+    +  +L+ +Y        S  +F+E+   +  V WT LISGY    +
Sbjct: 635 GQVMKWGFLSSSEMVCVSLLCLYMNSQRFVDSETLFSELQYPKGLVVWTALISGYAQQNH 694

Query: 415 GEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYA 474
            E+ALQ +  M+   + PD     ++L AC     ++  + + + +         ++   
Sbjct: 695 HEKALQFYQHMRSDNILPDQAAFASVLRACAGMSSLQNGQEIHSLIF---HTGFNMDEVT 751

Query: 475 C--YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE 532
           C   +D+  K G ++ + +V   MP + +    +S++     +G  E A  +  Q+ +  
Sbjct: 752 CSSLIDMYAKCGDVKGSLQVFREMPRRNNVISWNSMIVGLAKNGYAEEALEIFKQMEQQS 811

Query: 533 --PENAANYTLLSMVCSESGNWLGAEEVWRVM 562
             P+      +LS  CS +G      +V+ +M
Sbjct: 812 IIPDEVTFLGVLS-ACSHAGRVSEGRKVFDLM 842



 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 124/407 (30%), Positives = 208/407 (51%), Gaps = 3/407 (0%)

Query: 56  KSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLE 115
           + G   D +   ++++ Y    +   A +LF ++P  + ++WN +I+   + GF   ++ 
Sbjct: 236 RVGHAPDQITLVTVVNAYVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAIS 295

Query: 116 MFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLY 175
            F E+   G       L  ++S  + +  L  G  +HA    +G  + +V+V +AL+++Y
Sbjct: 296 FFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQATKEG-LDDNVYVGSALVNMY 354

Query: 176 SKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLT 235
           +KC     A +VF  +  RN V W AM+ G   +      ++ F  M+R G +P   T T
Sbjct: 355 AKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFT 414

Query: 236 IVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV 295
            +  ACA L  L  G  +H       F  +  ++ AL+ MY + + AL  AR  FE  K+
Sbjct: 415 SIFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAK-SGALKEARKQFELMKI 473

Query: 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV 355
            D V W++II GY Q     EA  +F RM    + P+ V+L +I+S+C     L  G   
Sbjct: 474 HDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQC 533

Query: 356 HCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYG 415
           HC ++K GL+     G++L++MY KCG + ++  +F  M +R+ VS   LI+GY   G+ 
Sbjct: 534 HCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPSRNVVSVNALIAGYTM-GHL 592

Query: 416 EEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462
           EEA+ LF E+Q  G++P  +T   +L  C+ A ++     +   VMK
Sbjct: 593 EEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMK 639



 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 129/491 (26%), Positives = 230/491 (46%), Gaps = 52/491 (10%)

Query: 13  LYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISM 72
           ++  E+ P     N      V+ AC+  Q   +FG Q+HC   K+G          LI M
Sbjct: 133 MWNHEVRP-----NEFTFAMVLSACSGLQD-VNFGRQVHCGVFKTGFGFRSFCQGGLIDM 186

Query: 73  YAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELL 132
           YAK      A  +FD     DT+SW ++I  + ++GF + ++++F  M   G       L
Sbjct: 187 YAKCRYLRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPDQITL 246

Query: 133 AGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV 192
             +++    +G L   R                                    ++F Q+ 
Sbjct: 247 VTVVNAYVALGRLADAR------------------------------------KLFTQIP 270

Query: 193 IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKA 252
             N V+W  MISG       +  I  F  +++ G+K TR +L  VL A A L  L  G  
Sbjct: 271 NPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSM 330

Query: 253 IHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSG 312
           +H  A   G D + ++ +AL++MY +C++ +  A+ +F     +++V+W++++ G++Q+G
Sbjct: 331 VHAQATKEGLDDNVYVGSALVNMYAKCSK-MDAAKQVFNSLGERNIVLWNAMLGGFAQNG 389

Query: 313 DLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN 372
              E M+ FS M+    +P+  T  +I S+C    +L+ G  +H  ++K     ++ + N
Sbjct: 390 LAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNKFASNLFVAN 449

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
           AL++MY+K G++  + + F  M   D VSW  +I GY    Y +EA  +F  M  +GV P
Sbjct: 450 ALVDMYAKSGALKEARKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLP 509

Query: 433 DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC----YVDLLGKSGKIED 488
           D +++ +I+SAC +   +K  +     ++K     + ++   C     +D+  K G +  
Sbjct: 510 DEVSLASIVSACANVQELKRGQQCHCLLVK-----VGLDTSTCAGSSLIDMYVKCGVVLA 564

Query: 489 ACKVVSTMPMK 499
           A  V  +MP +
Sbjct: 565 ARDVFYSMPSR 575



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 119/449 (26%), Positives = 212/449 (47%), Gaps = 38/449 (8%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           +H  +LK G     ++ N ++ +Y K    + A + F  +  +D  +WNS+++ +  +G 
Sbjct: 63  IHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGL 122

Query: 110 YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVST 169
           +   ++ F  M+           A ++S CS + ++  GRQ+H  V   G F    F   
Sbjct: 123 FATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTG-FGFRSFCQG 181

Query: 170 ALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKP 229
            L+D+Y+KC +   A  VF+  +  + VSWTA+I+G +        + +F  MQR G  P
Sbjct: 182 GLIDMYAKCRYLRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAP 241

Query: 230 TRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARII 289
            ++TL  V+ A   L  L +                                    AR +
Sbjct: 242 DQITLVTVVNAYVALGRLAD------------------------------------ARKL 265

Query: 290 FERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFL 349
           F +    +VV W+ +I G+++ G   EA+  F  ++   ++    +L ++LS+    S L
Sbjct: 266 FTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSML 325

Query: 350 SHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGY 409
           ++G  VH    K GL+ +V +G+AL+NMY+KC  + ++ Q+FN +  R+ V W  ++ G+
Sbjct: 326 NYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGF 385

Query: 410 GFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA 469
             +G  +E ++ F  M+  G +PD  T  +I SAC     +     L + VM + K A  
Sbjct: 386 AQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQL-HTVMIKNKFASN 444

Query: 470 IEHYACYVDLLGKSGKIEDACKVVSTMPM 498
           +      VD+  KSG +++A K    M +
Sbjct: 445 LFVANALVDMYAKSGALKEARKQFELMKI 473



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 109/224 (48%), Gaps = 1/224 (0%)

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
           L+ L   K IH  +   G      L   ++ +Y +C   +  A+  F R + KDV  W+S
Sbjct: 54  LQALSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGN-VDFAQKAFSRLEKKDVFAWNS 112

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           ++  Y   G  +  ++ F  M    + PN  T   +LS+C+    ++ G  VHC + K G
Sbjct: 113 VLSMYLDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTG 172

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
             F       L++MY+KC  +  +  +F+     D VSWT LI+GY   G+  EA+++F 
Sbjct: 173 FGFRSFCQGGLIDMYAKCRYLRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFD 232

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIA 467
            MQ  G  PD IT++ +++A    G + +A  LF  +     +A
Sbjct: 233 RMQRVGHAPDQITLVTVVNAYVALGRLADARKLFTQIPNPNVVA 276


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 185/567 (32%), Positives = 306/567 (53%), Gaps = 17/567 (2%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
            +   G++ N+    SV+   A +Q     G ++H  ++K G  +   + NSL++MYAK 
Sbjct: 195 RMRAEGVWPNSVTFASVLSVVA-SQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKC 253

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
              E A  +F  M  RD +SWN+++     NG  + +L++F +      +L     A +I
Sbjct: 254 GLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVI 313

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV-IRN 195
            LC+ I +L L RQ+H+ V+  G F     V TAL+D YSK      AL +F  M   +N
Sbjct: 314 KLCANIKQLGLARQLHSSVLKRG-FHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQN 372

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA-CAELRDLRNGKAIH 254
            VSWTAMI+GCI + +      LF  M+ +GV P   T + +L A  A L        IH
Sbjct: 373 VVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTASVASLP-----PQIH 427

Query: 255 GYAYCCGFDFDHHLSAALMHMY---CECTEALHPARIIFERTKVKDVVIWSSIIRGYSQS 311
                  ++    +  AL+  Y   C   EAL     IF+    KDVV WS+++  Y+Q+
Sbjct: 428 AQVIKTNYECTSIVGTALLASYSKLCNTEEALS----IFKMIDQKDVVSWSAMLTCYAQA 483

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF-LSHGLGVHCYIMKAGLNFDVSI 370
           GD   A  +F +M +  ++PN  T+ +++ +C   +  +  G   H   +K   +  + +
Sbjct: 484 GDSDGATNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQFHAISIKHRCHDALCV 543

Query: 371 GNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV 430
            +AL++MY++ GSI S+  IF     RD VSW +++SGY  HGY ++AL +F +M+  G+
Sbjct: 544 SSALVSMYARKGSIESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGI 603

Query: 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDAC 490
           E D +T L+++  C HAGLV+E +  F+++ ++  I   +EHYAC VDL  ++GK+++A 
Sbjct: 604 EMDGVTFLSVIMGCAHAGLVEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKLDEAM 663

Query: 491 KVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESG 550
            ++  M       +  +L+ AC++H  +E+ ++ A +L+  EP ++A Y LLS + S +G
Sbjct: 664 SLIEGMSFPAGPMVWRTLLGACKVHKNVELGKLAAEKLLSLEPFDSATYVLLSNIYSAAG 723

Query: 551 NWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            W   +EV ++M  K + K  G S I+
Sbjct: 724 KWKEKDEVRKLMDTKKVKKEAGCSWIQ 750



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 144/557 (25%), Positives = 263/557 (47%), Gaps = 22/557 (3%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSGSD-ADPVISNSLISMYAKFSKPESAYQLFDE 88
           L  V+K C  +   +  G QLH   ++ G D  D  +  SL+ MY K+       ++F+ 
Sbjct: 106 LVGVLKVCG-SVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEA 164

Query: 89  MPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELG 148
           MP R+ ++W S++  + Q+G     +E+F  M   G    +   A ++S+ +  G ++LG
Sbjct: 165 MPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLG 224

Query: 149 RQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCID 208
           R++HA  +  G    +VFV  +L+++Y+KC     A  VF  M  R+ VSW  +++G + 
Sbjct: 225 RRVHAQSVKFGCCS-TVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVL 283

Query: 209 SQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHL 268
           + +    + LF   +      T+ T   V+  CA ++ L   + +H      GF    ++
Sbjct: 284 NGHDLEALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNV 343

Query: 269 SAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER 328
             ALM  Y +  +  +   I    +  ++VV W+++I G  Q+GD+  A  LFSRMR + 
Sbjct: 344 MTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDG 403

Query: 329 IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSH 388
           + PN  T   IL++    S  S    +H  ++K        +G AL+  YSK  +   + 
Sbjct: 404 VAPNDFTYSTILTA----SVASLPPQIHAQVIKTNYECTSIVGTALLASYSKLCNTEEAL 459

Query: 389 QIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG 448
            IF  +  +D VSW+ +++ Y   G  + A  +F++M   G++P+  T+ +++ AC    
Sbjct: 460 SIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACASPT 519

Query: 449 LVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRIL--- 505
              +    F+ +  + +   A+   +  V +  + G IE A  +      + + R L   
Sbjct: 520 AGVDLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIESAQCIFE----RQTDRDLVSW 575

Query: 506 SSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV--CSESGNWLGAEEVWRVMR 563
           +S++S    HG  + A  +  Q+ EAE       T LS++  C+ +G     EE  R   
Sbjct: 576 NSMLSGYAQHGYSQKALDVFRQM-EAEGIEMDGVTFLSVIMGCAHAGL---VEEGQRYFD 631

Query: 564 AKGLSKSYGFSRIENEY 580
           +  +++ YG +     Y
Sbjct: 632 S--MARDYGITPTMEHY 646



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 131/470 (27%), Positives = 224/470 (47%), Gaps = 50/470 (10%)

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC-GFVLKAELLAGIISLCS 140
           A Q FDE+P+R+T+  +  +    + G   ++L+ F +++ C G  +    L G++ +C 
Sbjct: 57  ARQAFDEIPHRNTL--DHALFDHARRGSVHQALDHFLDVHRCHGGRVGGGALVGVLKVCG 114

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
            + +  LG+Q+H L I  G     V V T+L+D+Y K H  +   +VFE M  RN V+WT
Sbjct: 115 SVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWT 174

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY-- 258
           ++++G I        ++LF  M+ EGV P  VT   VL   A    +  G+ +H  +   
Sbjct: 175 SLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKF 234

Query: 259 -CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
            CC   F   +  +LM+MY +C   +  AR++F   + +D+V W++++ G   +G   EA
Sbjct: 235 GCCSTVF---VCNSLMNMYAKCG-LVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEA 290

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
           ++LF   R         T   ++  C     L     +H  ++K G +   ++  ALM+ 
Sbjct: 291 LQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDA 350

Query: 378 YSKCGSITSSHQIFNEMA-ARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAIT 436
           YSK G + ++  IF  M+ +++ VSWT +I+G   +G    A  LF  M+E GV P+  T
Sbjct: 351 YSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFT 410

Query: 437 VLAILSACN-------HAGLVK------------------------EAETLFNNVMKEKK 465
              IL+A         HA ++K                        EA ++F  ++ +K 
Sbjct: 411 YSTILTASVASLPPQIHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIF-KMIDQKD 469

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPM---KPSTRILSSLVSAC 512
           +        CY     ++G  + A  +   M M   KP+   +SS++ AC
Sbjct: 470 VVSWSAMLTCY----AQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDAC 515


>gi|297819542|ref|XP_002877654.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323492|gb|EFH53913.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1112

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 183/563 (32%), Positives = 316/563 (56%), Gaps = 12/563 (2%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGS-DADPVISNSLISMYAKFSKP- 79
           GL  N     +VI+AC+ +      G  +    +K+G  ++D  +  SLI M+ K     
Sbjct: 161 GLVPNDYCYTAVIRACSNSD-FVGVGRVILGFLMKTGHFESDVCVGCSLIDMFVKGENSF 219

Query: 80  ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLC 139
           E+AY++FD+M   + ++W  +I    Q GF   ++  F +M L GF      L+ + S C
Sbjct: 220 ENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSAC 279

Query: 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH---HWLIALRVFEQMVIRNE 196
           +++  L LGRQ+H+  I  G   L+  V  +L+D+Y+KC          +VF++M   + 
Sbjct: 280 AELENLSLGRQLHSWAIRSG---LADDVECSLVDMYAKCSADGSVDDCRKVFDRMQDHSV 336

Query: 197 VSWTAMISGCIDSQNYDT-GIDLFRAMQREG-VKPTRVTLTIVLLACAELRDLRNGKAIH 254
           +SWTA+I+G + + N  T  I+LF  M  +G V+P   T +    AC  + D R GK + 
Sbjct: 337 MSWTALITGYMQNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNVSDPRVGKQVL 396

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
           G+A+  G   +  +S +++ M+ +C + +  AR  FE    K++V +++ + G  ++ D 
Sbjct: 397 GHAFKRGLASNSSVSNSVISMFVKC-DRMEDARTAFESLSEKNLVSYNTFLDGTCRNLDF 455

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
             A +L S +    +  ++ T  ++LS       L  G  +H  ++K GL+ +  + NAL
Sbjct: 456 EHAFELLSEIAERELGVSAFTFASLLSGVANVGSLRKGEQIHSQVLKLGLSCNQPVCNAL 515

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           ++MYSKCGSI ++ ++F+ M  R+ +SWT++I+G+  HG+ E  L+ F +M + GV+P+ 
Sbjct: 516 ISMYSKCGSIDTASRVFSLMDNRNVISWTSMITGFAKHGFAERVLETFNQMTKEGVKPNE 575

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS 494
           +T +AILSAC+H GLV E    FN++ ++ KI   +EHYAC VDLL ++G + DA + ++
Sbjct: 576 VTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFIN 635

Query: 495 TMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLG 554
           TMP +    +  + + ACR+H   E+ ++ A +++E +P   A Y  LS + + +G W  
Sbjct: 636 TMPFQADVLVWRTFLGACRVHSNTELGKLAARKILEFDPNEPAAYIQLSNIYASAGKWEE 695

Query: 555 AEEVWRVMRAKGLSKSYGFSRIE 577
           + E+ R M+ + L K  G S IE
Sbjct: 696 STEMRRKMKERNLVKEGGCSWIE 718



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 149/544 (27%), Positives = 259/544 (47%), Gaps = 17/544 (3%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK---FSKPESA 82
           ++    S++K+C  A+ H   G  +H   ++   + D V+ NSLIS+Y+K    +K +  
Sbjct: 61  DSVTFSSLLKSCIRAR-HFRLGKLVHARLIEFEIEPDSVLYNSLISLYSKSGDLTKAKDV 119

Query: 83  YQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQI 142
           ++       RD +SW++++ CF  NG    ++++F E    G V        +I  CS  
Sbjct: 120 FETMGRFGKRDVVSWSAMMACFGNNGREFDAIKLFVEFLEMGLVPNDYCYTAVIRACSNS 179

Query: 143 GELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH-WLIALRVFEQMVIRNEVSWTA 201
             + +GR I   ++  G FE  V V  +L+D++ K  + +  A +VF++M   N V+WT 
Sbjct: 180 DFVGVGRVILGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTL 239

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           MI+ C+        I  F  M   G +  + TL+ V  ACAEL +L  G+ +H +A   G
Sbjct: 240 MITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGRQLHSWAIRSG 299

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL-SEAMKL 320
              D   S   M+  C    ++   R +F+R +   V+ W+++I GY Q+ +L +EA+ L
Sbjct: 300 LADDVECSLVDMYAKCSADGSVDDCRKVFDRMQDHSVMSWTALITGYMQNCNLATEAINL 359

Query: 321 FSRMRLE-RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           FS M  +  +EPN  T  +   +C   S    G  V  +  K GL  + S+ N++++M+ 
Sbjct: 360 FSEMITQGHVEPNHFTFSSAFKACGNVSDPRVGKQVLGHAFKRGLASNSSVSNSVISMFV 419

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           KC  +  +   F  ++ ++ VS+ T + G   +   E A +L  E+ E  +   A T  +
Sbjct: 420 KCDRMEDARTAFESLSEKNLVSYNTFLDGTCRNLDFEHAFELLSEIAERELGVSAFTFAS 479

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC--YVDLLGKSGKIEDACKVVSTMP 497
           +LS   + G +++ E + + V+   K+ L+     C   + +  K G I+ A +V S M 
Sbjct: 480 LLSGVANVGSLRKGEQIHSQVL---KLGLSCNQPVCNALISMYSKCGSIDTASRVFSLMD 536

Query: 498 MKPSTRILSSLVSACRIHGRLE-VAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAE 556
            + +    +S+++    HG  E V E       E    N   Y  +   CS  G      
Sbjct: 537 NR-NVISWTSMITGFAKHGFAERVLETFNQMTKEGVKPNEVTYVAILSACSHVGL---VS 592

Query: 557 EVWR 560
           E WR
Sbjct: 593 EGWR 596



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 102/213 (47%), Gaps = 10/213 (4%)

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP-NSVTLLAILSSCTRQS 347
           I  R  V D +I   +      +GDL  A+     M  + I P +SVT  ++L SC R  
Sbjct: 22  ISNRINVADRLILRHL-----NAGDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRAR 76

Query: 348 FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEM---AARDFVSWTT 404
               G  VH  +++  +  D  + N+L+++YSK G +T +  +F  M     RD VSW+ 
Sbjct: 77  HFRLGKLVHARLIEFEIEPDSVLYNSLISLYSKSGDLTKAKDVFETMGRFGKRDVVSWSA 136

Query: 405 LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK 464
           +++ +G +G   +A++LF+E  E G+ P+     A++ AC+++  V     +   +MK  
Sbjct: 137 MMACFGNNGREFDAIKLFVEFLEMGLVPNDYCYTAVIRACSNSDFVGVGRVILGFLMKTG 196

Query: 465 KIALAIEHYACYVDLLGKS-GKIEDACKVVSTM 496
                +      +D+  K     E+A KV   M
Sbjct: 197 HFESDVCVGCSLIDMFVKGENSFENAYKVFDKM 229


>gi|222626149|gb|EEE60281.1| hypothetical protein OsJ_13335 [Oryza sativa Japonica Group]
          Length = 1135

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 178/558 (31%), Positives = 298/558 (53%), Gaps = 10/558 (1%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           SG+  N     + + ACA     +  G Q+H  A+++G   D  I + LI MY++     
Sbjct: 108 SGVAPNDFACNAALVACADLGALRA-GEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLP 166

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
           +A ++FD M   D + + S+I+ F +NG +  + E   +M   G       +  I++ C 
Sbjct: 167 AAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACP 226

Query: 141 QIGELELGRQIHALVIVD-GSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSW 199
           ++    LG+QIH  +I   G    SV+ STAL+D YS+   + +A  VF+ +  +N VSW
Sbjct: 227 RV----LGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSW 282

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
            +M+   I     +  + +F  M  EGV P    L+IVL AC  +     G+ +H  A  
Sbjct: 283 CSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIG---LGRQLHCSAIK 339

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
                D  +S AL+ MY   T  +     +  + +  D+V W++ I    Q+G   +A+ 
Sbjct: 340 HDLITDIRVSNALLSMYGR-TGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIA 398

Query: 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           L  +M  E   PN     ++LSSC   + L  G+  HC  +K G + ++  GNAL+NMYS
Sbjct: 399 LLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYS 458

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           KCG + S+   F+ M   D  SW +LI G+  HG   +AL++F +M+ +G++PD  T L 
Sbjct: 459 KCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLG 518

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           +L  CNH+G+V+E E  F  ++ +     A  HYAC +D+LG++G+ ++A ++++ MP +
Sbjct: 519 VLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFE 578

Query: 500 PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVW 559
           P   I  +L+++C++H  L++ ++ A +L+E    ++A+Y L+S + +  G W  A +V 
Sbjct: 579 PDALIWKTLLASCKLHRNLDIGKLAADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVR 638

Query: 560 RVMRAKGLSKSYGFSRIE 577
           R M   G+ K  G S IE
Sbjct: 639 RRMDETGVKKDAGCSWIE 656



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 115/387 (29%), Positives = 197/387 (50%), Gaps = 15/387 (3%)

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D V+    ++   K  +   A  LFD MP ++ ++W S+++ +T+NG    +L MF +M 
Sbjct: 47  DVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMV 106

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
             G           +  C+ +G L  G Q+H+L +  G F    ++ + L+++YS+C   
Sbjct: 107 ESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAG-FAGDAWIGSCLIEMYSRCGSL 165

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             A  VF++M   + V +T++IS    +  ++   +    M ++G+KP   T+T +L AC
Sbjct: 166 PAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTAC 225

Query: 242 AELRDLRNGKAIHGY-AYCCGFDFDH-HLSAALMHMYCECTEALHPARIIFERTKVKDVV 299
             +     G+ IHGY     G      + S AL+  Y    E    A+ +F+    K+VV
Sbjct: 226 PRVL----GQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGE-FKLAKAVFDSLHCKNVV 280

Query: 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG--VHC 357
            W S+++ Y + G L EA+++F  M  E ++PN   L  +L +C      S GLG  +HC
Sbjct: 281 SWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACG-----SIGLGRQLHC 335

Query: 358 YIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEE 417
             +K  L  D+ + NAL++MY + G +     + N++   D VSWTT IS    +G+GE+
Sbjct: 336 SAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEK 395

Query: 418 ALQLFLEMQESGVEPDAITVLAILSAC 444
           A+ L  +M   G  P+     ++LS+C
Sbjct: 396 AIALLCQMHSEGFTPNGYAFSSVLSSC 422



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 165/309 (53%), Gaps = 15/309 (4%)

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
           AL +F++M  +N V+WT+++SG   +   +  + +F  M   GV P        L+ACA+
Sbjct: 67  ALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACAD 126

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
           L  LR G+ +H  A   GF  D  + + L+ MY  C  +L  A+ +F+R    DVV ++S
Sbjct: 127 LGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCG-SLPAAKEVFDRMDSPDVVGYTS 185

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA- 362
           +I  + ++G+   A +   +M  + ++PN  T+  IL++C R      G  +H Y++K  
Sbjct: 186 LISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPR----VLGQQIHGYLIKKI 241

Query: 363 GLNFD-VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
           GL    V    AL++ YS+ G    +  +F+ +  ++ VSW +++  Y   G  EEALQ+
Sbjct: 242 GLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQV 301

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKE--AETLFNNVMKEKKIALAIEHYACYVDL 479
           F +M   GV+P+   +  +L AC   GL ++     + ++++ + +++ A+      + +
Sbjct: 302 FGDMISEGVDPNEFALSIVLGACGSIGLGRQLHCSAIKHDLITDIRVSNAL------LSM 355

Query: 480 LGKSGKIED 488
            G++G +E+
Sbjct: 356 YGRTGLVEE 364



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 132/255 (51%), Gaps = 31/255 (12%)

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
           +F+R   K+VV W+S++ GY+++G    A+ +F+ M    + PN     A L +C     
Sbjct: 70  LFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGA 129

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
           L  G  VH   ++AG   D  IG+ L+ MYS+CGS+ ++ ++F+ M + D V +T+LIS 
Sbjct: 130 LRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISA 189

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN-------HAGLVKE----AETLF 457
           +  +G  E A +  ++M + G++P+  T+  IL+AC        H  L+K+    +++++
Sbjct: 190 FCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGYLIKKIGLRSQSVY 249

Query: 458 NNVM--------KEKKIALA---------IEHYACYVDLLGKSGKIEDACKVVSTM---P 497
           ++           E K+A A         +  +   + L  + G++E+A +V   M    
Sbjct: 250 SSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEG 309

Query: 498 MKPSTRILSSLVSAC 512
           + P+   LS ++ AC
Sbjct: 310 VDPNEFALSIVLGAC 324



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 89/184 (48%), Gaps = 9/184 (4%)

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           DV +    +N   K G +  +  +F+ M  ++ V+WT+++SGY  +G  E AL +F +M 
Sbjct: 47  DVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMV 106

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSG 484
           ESGV P+     A L AC   G ++  E + +  +   +   A + +  +C +++  + G
Sbjct: 107 ESGVAPNDFACNAALVACADLGALRAGEQVHSLAV---RAGFAGDAWIGSCLIEMYSRCG 163

Query: 485 KIEDACKVVSTMPMKPSTRILSSLVSA-CRIHGRLEV-AEMLAHQLIEAEPENAANYTLL 542
            +  A +V   M   P     +SL+SA CR +G  E+ AE L   L +    N    T +
Sbjct: 164 SLPAAKEVFDRMD-SPDVVGYTSLISAFCR-NGEFELAAEALIQMLKQGLKPNEHTMTTI 221

Query: 543 SMVC 546
              C
Sbjct: 222 LTAC 225


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 178/592 (30%), Positives = 306/592 (51%), Gaps = 66/592 (11%)

Query: 50  LHCTALKSGSDADPV-ISNSLISMYAKFSKPESAYQLFDEMP------------------ 90
           +HC  LK+   A P  + N L++ YAK  +   A ++FDEMP                  
Sbjct: 34  VHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSR 93

Query: 91  -------------YRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAEL-LAGII 136
                         RD +S+N++I  F+  G   RS++++R +     V    + L+ +I
Sbjct: 94  LVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMI 153

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQ------ 190
            + S + +  LG  +H  V+  G F    FV + L+D+Y+K      A RVF++      
Sbjct: 154 MVASALSDRALGHSVHCQVLRLG-FGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTV 212

Query: 191 -------------------------MVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
                                    MV R+ ++WT M++G   +      +D+FR M+ E
Sbjct: 213 VMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAE 272

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
           GV   + T   +L AC  L     GK IH Y     ++ +  + +AL+ MY +C  ++  
Sbjct: 273 GVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKC-RSIRL 331

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           A  +F R   ++++ W+++I GY Q+    EA++ FS M+++ I+P+  TL +++SSC  
Sbjct: 332 AEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCAN 391

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
            + L  G   HC  + +GL   +++ NAL+ +Y KCGSI  +H++F+EM+  D VSWT L
Sbjct: 392 LASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTAL 451

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           ++GY   G  +E + LF +M  +G++PD +T + +LSAC+ AGLV++    F+++ K+  
Sbjct: 452 VTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHD 511

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
           I    +HY C +DL  +SG+ ++A + +  MP  P     ++L+S+CR+ G +E+ +  A
Sbjct: 512 IVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAA 571

Query: 526 HQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
             L+E +P+N A+Y LL  + +  G W     + R MR + + K  G S I+
Sbjct: 572 ENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIK 623



 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 126/444 (28%), Positives = 207/444 (46%), Gaps = 42/444 (9%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           +++ LY+  L    +      L ++I   A A + +  G  +HC  L+ G  A   + + 
Sbjct: 128 RSVQLYRALLREESVRPTRITLSAMIMV-ASALSDRALGHSVHCQVLRLGFGAYAFVGSP 186

Query: 69  LISMYAKFSKPESAYQLFDEMPY-------------------------------RDTISW 97
           L+ MYAK      A ++F EM                                 RD+I+W
Sbjct: 187 LVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITW 246

Query: 98  NSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIV 157
            +++   TQNG  + +L++FR M   G  +       I++ C  +   E G+QIHA  I 
Sbjct: 247 TTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAY-IT 305

Query: 158 DGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGID 217
              +E +VFV +AL+D+YSKC    +A  VF +M  RN +SWTAMI G   +   +  + 
Sbjct: 306 RTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVR 365

Query: 218 LFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYC 277
            F  MQ +G+KP   TL  V+ +CA L  L  G   H  A   G      +S AL+ +Y 
Sbjct: 366 AFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYG 425

Query: 278 ECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLL 337
           +C  ++  A  +F+     D V W++++ GY+Q G   E + LF +M +  ++P+ VT +
Sbjct: 426 KCG-SIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFI 484

Query: 338 AILSSCTRQSFLSHGLGVHCYIMKAGLNFD-VSIGN---ALMNMYSKCGSITSSHQIFNE 393
            +LS+C+R   +  G     Y      + D V I +    ++++YS+ G    + +   +
Sbjct: 485 GVLSACSRAGLVEKGCD---YFDSMQKDHDIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQ 541

Query: 394 MA-ARDFVSWTTLISGYGFHGYGE 416
           M  + D   W TL+S     G  E
Sbjct: 542 MPHSPDAFGWATLLSSCRLRGNME 565



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 102/207 (49%), Gaps = 16/207 (7%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           E+   G+  +   L SVI +CA   + +  G Q HC AL SG      +SN+L+++Y K 
Sbjct: 369 EMQMDGIKPDDFTLGSVISSCANLASLEE-GAQFHCLALVSGLMRYITVSNALVTLYGKC 427

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
              E A++LFDEM + D +SW +++  + Q G    ++++F +M + G         G++
Sbjct: 428 GSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVL 487

Query: 137 SLCSQIGELELG-------RQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
           S CS+ G +E G       ++ H +V +D  +       T ++DLYS+   +  A    +
Sbjct: 488 SACSRAGLVEKGCDYFDSMQKDHDIVPIDDHY-------TCMIDLYSRSGRFKEAEEFIK 540

Query: 190 QMV-IRNEVSWTAMISGCIDSQNYDTG 215
           QM    +   W  ++S C    N + G
Sbjct: 541 QMPHSPDAFGWATLLSSCRLRGNMEIG 567


>gi|326507410|dbj|BAK03098.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 698

 Score =  309 bits (792), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 185/566 (32%), Positives = 306/566 (54%), Gaps = 8/566 (1%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           + +H  GL +NT  L S +++ A A      G QLH  A+K+G   +   + +L+ MYAK
Sbjct: 90  RAMHERGLAANTFALGSALRSAA-AMGCSALGTQLHSLAVKAGLADNVFSATALLHMYAK 148

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
             +   A +LFD MP R+T+SWN+++  + ++G    ++++F EM   GF+      A +
Sbjct: 149 CGRTRDACRLFDGMPERNTVSWNALVAGYVESGKVAPAVQLFVEMEREGFLPDEATFAAL 208

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           +++ +      L  Q+H  ++  GS  L + V  A +  YS+C     + R+F+++  R+
Sbjct: 209 LTVVND-STCFLMHQLHGKIVKYGS-ALGLIVLNAAITAYSQCGALANSRRIFDEIGDRS 266

Query: 196 E-VSWTAMISGCIDSQNYDTGIDLFRAMQR-EGVKPTRVTLTIVLLACAELRDLRNGKAI 253
           + +SW AM+            +  F +M R  GV+P   + T ++ ACAE RD   G  I
Sbjct: 267 DLISWNAMLGAYATHGMEHEAMRFFASMMRASGVQPDMYSFTSIISACAEHRD-HGGTVI 325

Query: 254 HGYAYCCGFDFDHHLSAALMHMYCECTE--ALHPARIIFERTKVKDVVIWSSIIRGYSQS 311
           HG     GF+   H+  AL+ MY   +E   +  A   F+   +KD V W+S++ GYSQ 
Sbjct: 326 HGLVSKNGFEGVTHVCNALIAMYTRFSENCMMEDAYKCFDSLLLKDTVSWNSMLTGYSQH 385

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
           G  ++A++ F  M+ E I  +     A L SC+  + L  G  +H  ++++G   +  + 
Sbjct: 386 GLSADALRFFRCMQSENITTDEYAFSAALRSCSDLALLRLGRQIHGLVIRSGFASNNFVS 445

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
           ++L+ MYSK G +  + + F E      V W +++ GY  HG  +    LF +M E  V 
Sbjct: 446 SSLIFMYSKSGILDDAMKSFEEADKSSSVPWNSMMFGYAQHGKAQAVRSLFNQMLELKVP 505

Query: 432 PDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACK 491
            D IT + +++AC+HAGLV E   + N +     I L +EHYAC +DL G++G+++ A +
Sbjct: 506 LDHITFVGLITACSHAGLVDEGSEILNTMESRYGIPLRMEHYACGIDLYGRAGQLDKAKE 565

Query: 492 VVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGN 551
           ++ +MP +P   +  +L+ ACR+HG +E+A  +A  L+EAEP   + Y LLS + S  G 
Sbjct: 566 LIDSMPFEPDAMVWMTLLGACRVHGNMELASDVASHLLEAEPRQHSTYVLLSNMYSGLGM 625

Query: 552 WLGAEEVWRVMRAKGLSKSYGFSRIE 577
           W     V + M+ KGLSK  G+S IE
Sbjct: 626 WSDRAIVQKEMKNKGLSKVPGWSWIE 651



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 148/529 (27%), Positives = 253/529 (47%), Gaps = 28/529 (5%)

Query: 51  HCTALKSGSDADPVISNSLISMYAKFSKP--ESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           H T LKSG  + P   N L++ Y+  S P   +A +LFDE+P  D  SWNS++      G
Sbjct: 23  HATLLKSGVTS-PTPWNQLLTAYS-VSSPGLAAARRLFDEIPRLDAASWNSLLAAHVSIG 80

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
            +  +  + R M+  G       L   +   + +G   LG Q+H+L +  G  + +VF +
Sbjct: 81  AHPAACRLLRAMHERGLAANTFALGSALRSAAAMGCSALGTQLHSLAVKAGLAD-NVFSA 139

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
           TALL +Y+KC     A R+F+ M  RN VSW A+++G ++S      + LF  M+REG  
Sbjct: 140 TALLHMYAKCGRTRDACRLFDGMPERNTVSWNALVAGYVESGKVAPAVQLFVEMEREGFL 199

Query: 229 PTRVT----LTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
           P   T    LT+V  +   L    +GK +  Y    G      L+AA+   Y +C    +
Sbjct: 200 PDEATFAALLTVVNDSTCFLMHQLHGKIVK-YGSALGLIV---LNAAIT-AYSQCGALAN 254

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF-SRMRLERIEPNSVTLLAILSSC 343
             RI  E     D++ W++++  Y+  G   EAM+ F S MR   ++P+  +  +I+S+C
Sbjct: 255 SRRIFDEIGDRSDLISWNAMLGAYATHGMEHEAMRFFASMMRASGVQPDMYSFTSIISAC 314

Query: 344 TRQSFLSHGLGV-HCYIMKAGLNFDVSIGNALMNMYSKCGS---ITSSHQIFNEMAARDF 399
                  HG  V H  + K G      + NAL+ MY++      +  +++ F+ +  +D 
Sbjct: 315 AEHR--DHGGTVIHGLVSKNGFEGVTHVCNALIAMYTRFSENCMMEDAYKCFDSLLLKDT 372

Query: 400 VSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNN 459
           VSW ++++GY  HG   +AL+ F  MQ   +  D     A L +C+   L++    +   
Sbjct: 373 VSWNSMLTGYSQHGLSADALRFFRCMQSENITTDEYAFSAALRSCSDLALLRLGRQIHGL 432

Query: 460 VMKEKKIALAIEHY--ACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGR 517
           V++      A  ++  +  + +  KSG ++DA K       K S+   +S++     HG+
Sbjct: 433 VIRS---GFASNNFVSSSLIFMYSKSGILDDAMKSFEEAD-KSSSVPWNSMMFGYAQHGK 488

Query: 518 LEVAEMLAHQLIEAE-PENAANYTLLSMVCSESGNWLGAEEVWRVMRAK 565
            +    L +Q++E + P +   +  L   CS +G      E+   M ++
Sbjct: 489 AQAVRSLFNQMLELKVPLDHITFVGLITACSHAGLVDEGSEILNTMESR 537



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 149/349 (42%), Gaps = 31/349 (8%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           + +  +   +  SG+  +     S+I ACA  +   H G  +H    K+G +    + N+
Sbjct: 286 EAMRFFASMMRASGVQPDMYSFTSIISACA--EHRDHGGTVIHGLVSKNGFEGVTHVCNA 343

Query: 69  LISMYAKFSKP---ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
           LI+MY +FS+    E AY+ FD +  +DT+SWNS++  ++Q+G    +L  FR M     
Sbjct: 344 LIAMYTRFSENCMMEDAYKCFDSLLLKDTVSWNSMLTGYSQHGLSADALRFFRCMQSENI 403

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
                  +  +  CS +  L LGRQIH LVI  G F  + FVS++L+ +YSK      A+
Sbjct: 404 TTDEYAFSAALRSCSDLALLRLGRQIHGLVIRSG-FASNNFVSSSLIFMYSKSGILDDAM 462

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA--- 242
           + FE+    + V W +M+ G            LF  M    V    +T   ++ AC+   
Sbjct: 463 KSFEEADKSSSVPWNSMMFGYAQHGKAQAVRSLFNQMLELKVPLDHITFVGLITACSHAG 522

Query: 243 ---------ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERT 293
                       + R G  +    Y CG D           +Y    +      +I    
Sbjct: 523 LVDEGSEILNTMESRYGIPLRMEHYACGID-----------LYGRAGQLDKAKELIDSMP 571

Query: 294 KVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSS 342
              D ++W +++      G++  A  + S   L   EP   +   +LS+
Sbjct: 572 FEPDAMVWMTLLGACRVHGNMELASDVAS--HLLEAEPRQHSTYVLLSN 618


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  309 bits (792), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 173/511 (33%), Positives = 279/511 (54%), Gaps = 37/511 (7%)

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           N+L+S YAK    ++    FD MP+RD++S+N+ I  F+ N     SLE+F+ M   GF 
Sbjct: 93  NALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFE 152

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
                +  I++  +Q+ +L  G+QIH  +IV  +F  +VF+  AL D+Y+KC     A  
Sbjct: 153 PTEYTIVSILNASAQLLDLRYGKQIHGSIIVR-NFLGNVFIWNALTDMYAKCGEIEQARW 211

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           +F+ +  +N VSW  MISG   +   +  I L   M+  G  P +VT++ ++ A      
Sbjct: 212 LFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAA------ 265

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
                                        YC+C   +  AR +F   K KD+V W++++ 
Sbjct: 266 -----------------------------YCQCGR-VDEARRVFSEFKEKDIVCWTAMMV 295

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           GY+++G   +A+ LF+ M LE IEP+S TL +++SSC + + L HG  VH   + AGLN 
Sbjct: 296 GYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNN 355

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           ++ + +AL++MYSKCG I  +  +FN M  R+ VSW  +I G   +G+ ++AL+LF  M 
Sbjct: 356 NLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENML 415

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
           +   +PD +T + ILSAC H   +++ +  F+++  +  +   ++HYAC V+LLG++G+I
Sbjct: 416 QQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRI 475

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546
           E A  ++  M   P   I S+L+S C   G +  AE+ A  L E +P  A  Y +LS + 
Sbjct: 476 EQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMY 535

Query: 547 SESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +  G W     V  +M++K + K  GFS IE
Sbjct: 536 ASMGRWKDVASVRNLMKSKNVKKFAGFSWIE 566



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 106/413 (25%), Positives = 195/413 (47%), Gaps = 63/413 (15%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           +++L L+K+ +   G       + S++ A A       +G Q+H + +      +  I N
Sbjct: 137 QESLELFKR-MQREGFEPTEYTIVSILNASAQL-LDLRYGKQIHGSIIVRNFLGNVFIWN 194

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +L  MYAK  + E A  LFD +  ++ +SWN +I+ + +NG   + + +  +M L G + 
Sbjct: 195 ALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMP 254

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
               ++ II+   Q G ++  R                                    RV
Sbjct: 255 DQVTMSTIIAAYCQCGRVDEAR------------------------------------RV 278

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F +   ++ V WTAM+ G   +   +  + LF  M  E ++P   TL+ V+ +CA+L  L
Sbjct: 279 FSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASL 338

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
            +G+A+HG +   G + +  +S+AL+ MY +C   +  AR +F     ++VV W+++I G
Sbjct: 339 HHGQAVHGKSILAGLNNNLLVSSALIDMYSKCG-FIDDARSVFNLMPTRNVVSWNAMIVG 397

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
            +Q+G   +A++LF  M  ++ +P++VT + ILS+C           +HC  ++ G  + 
Sbjct: 398 CAQNGHDKDALELFENMLQQKFKPDNVTFIGILSAC-----------LHCNWIEQGQEYF 446

Query: 368 VSIGNA------------LMNMYSKCGSITSSHQIFNEMA-ARDFVSWTTLIS 407
            SI N             ++N+  + G I  +  +   MA   DF+ W+TL+S
Sbjct: 447 DSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLS 499



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 125/267 (46%), Gaps = 12/267 (4%)

Query: 57  SGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEM 116
           SG   D V  +++I+ Y +  + + A ++F E   +D + W +++  + +NG    +L +
Sbjct: 250 SGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLL 309

Query: 117 FREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYS 176
           F EM L      +  L+ ++S C+++  L  G+ +H   I+ G    ++ VS+AL+D+YS
Sbjct: 310 FNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAG-LNNNLLVSSALIDMYS 368

Query: 177 KCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTI 236
           KC     A  VF  M  RN VSW AMI GC  + +    ++LF  M ++  KP  VT   
Sbjct: 369 KCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIG 428

Query: 237 VLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI------IF 290
           +L AC     +  G+      Y       H ++  L H  C         RI      I 
Sbjct: 429 ILSACLHCNWIEQGQ-----EYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIK 483

Query: 291 ERTKVKDVVIWSSIIRGYSQSGDLSEA 317
                 D +IWS+++   S  GD+  A
Sbjct: 484 NMAHDPDFLIWSTLLSICSTKGDIVNA 510



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 76/148 (51%), Gaps = 1/148 (0%)

Query: 3   SKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDAD 62
           +K+  E+   L   E+    +  ++  L SV+ +CA   +  H G  +H  ++ +G + +
Sbjct: 298 AKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHH-GQAVHGKSILAGLNNN 356

Query: 63  PVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL 122
            ++S++LI MY+K    + A  +F+ MP R+ +SWN++I    QNG    +LE+F  M  
Sbjct: 357 LLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQ 416

Query: 123 CGFVLKAELLAGIISLCSQIGELELGRQ 150
             F        GI+S C     +E G++
Sbjct: 417 QKFKPDNVTFIGILSACLHCNWIEQGQE 444


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  309 bits (792), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 189/535 (35%), Positives = 287/535 (53%), Gaps = 7/535 (1%)

Query: 47   GLQLHCTALKSG-SDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT 105
            G ++H    +SG  DA   I N+L++MY K +  ++A  +F  MP +DT+SWNS+I+   
Sbjct: 474  GQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLD 533

Query: 106  QNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSV 165
             N  +  ++  F  M   G V     +   +S CS +G L LGRQIH      G  +L V
Sbjct: 534  HNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGEGFKWG-LDLDV 592

Query: 166  FVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQ-NYDTGIDLFRAMQR 224
             VS ALL LY++        +VF QM   ++VSW + I      + +    +  F  M +
Sbjct: 593  SVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQALKYFLEMMQ 652

Query: 225  EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
             G +P RVT   +L A +    L  G  IH          D+ +  AL+  Y +C E + 
Sbjct: 653  AGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYSVADDNAIENALLAFYGKC-EQME 711

Query: 285  PARIIFER-TKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC 343
               IIF R ++ +D V W+S+I GY  SG L +AM L   M     + +  T   +LS+C
Sbjct: 712  DCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLSAC 771

Query: 344  TRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWT 403
               + L  G+ VH   ++A L  DV +G+AL++MY+KCG I  + + F  M  R+  SW 
Sbjct: 772  ASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWN 831

Query: 404  TLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKE 463
            ++ISGY  HG+G++AL++F  M++ G  PD +T + +LSAC+H GLV E    F ++ + 
Sbjct: 832  SMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSACSHVGLVDEGYKHFKSMGEV 891

Query: 464  KKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSA-CRIHGR-LEVA 521
              ++  IEH++C VDLLG++G ++     + TMPM P+  I  +++ A CR +GR  E+ 
Sbjct: 892  YGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMPMDPNILIWRTVLGACCRANGRNTELG 951

Query: 522  EMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
            +  A  LIE EP+NA NY LLS + +  GNW    E    MR   + K  G S +
Sbjct: 952  QRAAKMLIELEPQNAVNYVLLSNMHAAGGNWEDVVEARLAMRKAAVKKDAGCSWV 1006



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 124/436 (28%), Positives = 226/436 (51%), Gaps = 15/436 (3%)

Query: 21  SGLYSNTAILPSVIKACAY-AQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKP 79
           SGL  N   + S ++AC     T    G+Q+H    K    +D ++SN L+SMY+  S  
Sbjct: 235 SGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSGS 294

Query: 80  -ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE----LLAG 134
            + A+++FDE+ +R++++WNSII+ + + G  V + ++F  M + G  L        L  
Sbjct: 295 IDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYTLCS 354

Query: 135 IISLCSQIGELELGRQIHALVIVDGS-FELSVFVSTALLDLYSKCHHWLIALRVFEQMVI 193
           +++    + +  L      L  ++ S F   ++V +AL++ +++      A  +F+QM  
Sbjct: 355 LVTAACSLADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYD 414

Query: 194 RNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL----RN 249
           RN V+   ++ G       +    +F+ M ++ V+    +L ++L    E  +L    R 
Sbjct: 415 RNAVTMNGLMVGLARQHQGEEAAKVFKEM-KDLVEINSESLVVLLSTFTEFSNLKEGKRK 473

Query: 250 GKAIHGYAYCCGF-DFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
           G+ +H Y +  G  D    +  AL++MY +CT A+  A  +F+    KD V W+S+I G 
Sbjct: 474 GQEVHAYLFRSGLVDARISIGNALVNMYGKCT-AIDNACSVFQLMPSKDTVSWNSMISGL 532

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
             +    EA+  F  M+   + P++ ++++ LSSC+   +L+ G  +H    K GL+ DV
Sbjct: 533 DHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDV 592

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYG-FHGYGEEALQLFLEMQE 427
           S+ NAL+ +Y++  SI    ++F +M   D VSW + I     +     +AL+ FLEM +
Sbjct: 593 SVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQALKYFLEMMQ 652

Query: 428 SGVEPDAITVLAILSA 443
           +G  P+ +T + IL+A
Sbjct: 653 AGWRPNRVTFINILAA 668



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 134/463 (28%), Positives = 233/463 (50%), Gaps = 18/463 (3%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
            LH    K+G   D    N+LI++Y +     SA +LFDEMP ++ +SW+ +I+ +TQN 
Sbjct: 161 HLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNR 220

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGE--LELGRQIHALVIVDGSFELSVF 166
               +  +F+ +   G +     +   +  C Q G   ++LG QIHA +         + 
Sbjct: 221 MPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVS-DMI 279

Query: 167 VSTALLDLYSKCHHWL-IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
           +S  L+ +YS C   +  A RVF+++  RN V+W ++IS      +  +   LF  MQ E
Sbjct: 280 LSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQME 339

Query: 226 GV----KPTRVTLTIVLLACAELRD--LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCEC 279
           GV    +P   TL  ++ A   L D  L   + +       GF  D ++ +AL++ +   
Sbjct: 340 GVELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFAR- 398

Query: 280 TEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAI 339
              +  A++IF++   ++ V  + ++ G ++     EA K+F  M+ + +E NS +L+ +
Sbjct: 399 YGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMK-DLVEINSESLVVL 457

Query: 340 LSSCTRQSFLSH----GLGVHCYIMKAGL-NFDVSIGNALMNMYSKCGSITSSHQIFNEM 394
           LS+ T  S L      G  VH Y+ ++GL +  +SIGNAL+NMY KC +I ++  +F  M
Sbjct: 458 LSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLM 517

Query: 395 AARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAE 454
            ++D VSW ++ISG   +   EEA+  F  M+ +G+ P   +V++ LS+C+  G +    
Sbjct: 518 PSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGR 577

Query: 455 TLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
            +     K   + L +      + L  ++  I +  KV   MP
Sbjct: 578 QIHGEGFKW-GLDLDVSVSNALLTLYAETDSINECQKVFFQMP 619



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 90/207 (43%), Gaps = 28/207 (13%)

Query: 355 VHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGY 414
           +H  + K G   DV   N L+N+Y + G++ S+ ++F+EM  ++ VSW+ LISGY  +  
Sbjct: 162 LHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRM 221

Query: 415 GEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYA 474
            +EA  LF  +  SG+ P+   V + L AC   G                K+ + I  + 
Sbjct: 222 PDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTG------------IKLGMQIHAFI 269

Query: 475 CYVDLLGK--------------SGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEV 520
           C +  +                SG I+DA +V   +  + S    S +   CR    +  
Sbjct: 270 CKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSA 329

Query: 521 AEMLAHQLIEAEPEN--AANYTLLSMV 545
            ++ +   +E    N     YTL S+V
Sbjct: 330 FKLFSVMQMEGVELNLRPNEYTLCSLV 356


>gi|225454363|ref|XP_002276073.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial [Vitis vinifera]
          Length = 673

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 180/542 (33%), Positives = 294/542 (54%), Gaps = 16/542 (2%)

Query: 45  HFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSII--- 101
           H G QLH   +K G+     + N ++ +Y K  +     ++FDEMP ++ +SWN++I   
Sbjct: 90  HGGKQLHAHVIKLGNCNLLSLQNQVLHVYVKCKEFNDVCKMFDEMPLKNVVSWNTLICGV 149

Query: 102 ---NC---FTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALV 155
              NC     + GF+      FR+M L         L G++    ++ ++ + RQ+H  +
Sbjct: 150 VEGNCKFALVRLGFH-----YFRQMVLEMMAPNCITLNGLLRASIELNDVGICRQLHCFI 204

Query: 156 IVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTG 215
           +  G F+ + FV +AL+D Y+K      A   F+++  R+ V W  M+S    +      
Sbjct: 205 LKSG-FDSNCFVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYALNGVQGKA 263

Query: 216 IDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHM 275
             +F+ M+ EGVK    T T ++ +C  L     GK +HG      FD D  +++AL+ M
Sbjct: 264 FGVFKLMRLEGVKGDNFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVLVASALVDM 323

Query: 276 YCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVT 335
           Y +  E +  AR  F+   VK++V W+++I GY Q GD  EAM+L   M      P+ + 
Sbjct: 324 YSK-NENIEDARKAFDGMIVKNIVSWTTMIVGYGQHGDGKEAMRLLQEMIRVYTYPDELA 382

Query: 336 LLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA 395
           L +ILSSC   S  S  + VH Y+++ G    +SI NAL++ YSKCGSI S+ Q F+ +A
Sbjct: 383 LASILSSCGNLSATSEVVQVHAYVVENGFEAFLSIANALVSAYSKCGSIGSAFQSFSSVA 442

Query: 396 ARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAET 455
             D +SWT+L+  Y FHG  +E +++F +M  S V PD +  L +LSAC H G V E   
Sbjct: 443 EPDIISWTSLMGAYAFHGLSKEGVEVFEKMLFSNVRPDKVAFLGVLSACAHGGFVLEGLH 502

Query: 456 LFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIH 515
            FN ++   +I    EHY C +DLLG++G +++A  ++++MP++P +  L + + AC++H
Sbjct: 503 YFNLMINVYQIMPDSEHYTCIIDLLGRAGFLDEAINLLTSMPVEPRSDTLGAFLGACKVH 562

Query: 516 GRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSR 575
             + +A   + +L   EP   ANY+L+S + +  G+W     V ++MR +   K  G S 
Sbjct: 563 RNVGLARWASEKLFVMEPNEPANYSLMSNMYASVGHWFDVARVRKLMRERCDFKVPGCSW 622

Query: 576 IE 577
           +E
Sbjct: 623 ME 624



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 120/421 (28%), Positives = 210/421 (49%), Gaps = 11/421 (2%)

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           + + +++G L  G+Q+HA VI  G+  L + +   +L +Y KC  +    ++F++M ++N
Sbjct: 80  LKISAKLGFLHGGKQLHAHVIKLGNCNL-LSLQNQVLHVYVKCKEFNDVCKMFDEMPLKN 138

Query: 196 EVSWTAMISGCIDSQN----YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGK 251
            VSW  +I G ++          G   FR M  E + P  +TL  +L A  EL D+   +
Sbjct: 139 VVSWNTLICGVVEGNCKFALVRLGFHYFRQMVLEMMAPNCITLNGLLRASIELNDVGICR 198

Query: 252 AIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQS 311
            +H +    GFD +  + +AL+  Y +    +  A+  F+    +D+V+W+ ++  Y+ +
Sbjct: 199 QLHCFILKSGFDSNCFVGSALVDSYAK-FGLVDEAQSAFDEVSSRDLVLWNVMVSCYALN 257

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
           G   +A  +F  MRLE ++ ++ T  ++++SC        G  VH  I++   + DV + 
Sbjct: 258 GVQGKAFGVFKLMRLEGVKGDNFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVLVA 317

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
           +AL++MYSK  +I  + + F+ M  ++ VSWTT+I GYG HG G+EA++L  EM      
Sbjct: 318 SALVDMYSKNENIEDARKAFDGMIVKNIVSWTTMIVGYGQHGDGKEAMRLLQEMIRVYTY 377

Query: 432 PDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACK 491
           PD + + +ILS+C +     E   +   V+ E      +      V    K G I  A +
Sbjct: 378 PDELALASILSSCGNLSATSEVVQVHAYVV-ENGFEAFLSIANALVSAYSKCGSIGSAFQ 436

Query: 492 VVSTMPMKPSTRILSSLVSACRIHG-RLEVAEMLAHQLI-EAEPENAANYTLLSMVCSES 549
             S++  +P     +SL+ A   HG   E  E+    L     P+  A   +LS  C+  
Sbjct: 437 SFSSVA-EPDIISWTSLMGAYAFHGLSKEGVEVFEKMLFSNVRPDKVAFLGVLS-ACAHG 494

Query: 550 G 550
           G
Sbjct: 495 G 495



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 103/243 (42%), Gaps = 55/243 (22%)

Query: 339 ILSSCTRQSFLSHGLGV-------------HCYIMKAGLNFDVSIGNALMNMYSKCGSIT 385
           ++ SC+  SF SH L +             H +++K G    +S+ N ++++Y KC    
Sbjct: 66  LVDSCSTHSFSSHALKISAKLGFLHGGKQLHAHVIKLGNCNLLSLQNQVLHVYVKCKEFN 125

Query: 386 SSHQIFNEMAARDFVSWTTLISGY------------GFHGYGEEALQLF----------- 422
              ++F+EM  ++ VSW TLI G             GFH + +  L++            
Sbjct: 126 DVCKMFDEMPLKNVVSWNTLICGVVEGNCKFALVRLGFHYFRQMVLEMMAPNCITLNGLL 185

Query: 423 ---LEMQE-------------SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
              +E+ +             SG + +     A++ +    GLV EA++ F+ V   + +
Sbjct: 186 RASIELNDVGICRQLHCFILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAFDEV-SSRDL 244

Query: 467 ALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAH 526
            L     +CY  L G  GK     K++    +K      +S++++C + G   + + + H
Sbjct: 245 VLWNVMVSCYA-LNGVQGKAFGVFKLMRLEGVKGDNFTFTSMINSCGVLGSCGLGKQV-H 302

Query: 527 QLI 529
            LI
Sbjct: 303 GLI 305


>gi|92429671|gb|ABE77204.1| unknown [Sorghum bicolor]
          Length = 795

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 181/559 (32%), Positives = 300/559 (53%), Gaps = 6/559 (1%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           +G   +    P V+K CA A      G   H   +K G  AD   +NSL+++YAK     
Sbjct: 114 AGARPDRFTFPVVLKCCARAGALGE-GRAAHAAVIKLGLGADVYTANSLVALYAKLGLVG 172

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV--LKAELLAGIISL 138
            A ++FD MP RD +SWN++++ +  NG    +L  FREM     V      ++A + + 
Sbjct: 173 DAERVFDGMPARDIVSWNTMVDGYVSNGMGALALACFREMNDALQVGHDSVGVIAALAAC 232

Query: 139 CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
           C +   L LGR+IH   I  G  E  V V T+L+D+Y KC +   A  VF +M +R  V+
Sbjct: 233 CLE-SALALGREIHGYAIRHG-LEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVT 290

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258
           W  MI G   ++      D F  M+ +G +   VT   +L ACA+      G+++H Y  
Sbjct: 291 WNCMIGGYALNERPVDAFDCFMQMRVDGFQVEVVTAINLLTACAQTESSLFGRSVHAYVV 350

Query: 259 CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAM 318
              F     L  AL+ MY +  + +  +  IF +   K +V W+++I  Y       EA+
Sbjct: 351 RRHFLPHVVLETALLEMYGKVGK-VESSEKIFGQITDKTLVSWNNMIAAYMYMEMYQEAI 409

Query: 319 KLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMY 378
            LF  +  + + P+  T+  ++ +      +     +H YI+K G      I NA+M+MY
Sbjct: 410 ALFLELLNQPLYPDYFTMTTVVPAFVLLGSIRQCKQMHSYIVKLGYGDSTLIMNAVMHMY 469

Query: 379 SKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
           ++CG+I +S +IF++M  +D +SW T+I GY  HG G+ AL++F EM+ SG+EP+  T +
Sbjct: 470 ARCGNIVASREIFDKMPGKDVISWNTIIIGYAIHGQGKIALEMFDEMKCSGMEPNESTFV 529

Query: 439 AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPM 498
           ++L+AC+ +GL  E    FN++ +E  +   IEHY C  DLLG++G++ +  + +  MP+
Sbjct: 530 SVLTACSVSGLEAEGWKEFNSMQQEYGMIPQIEHYGCMTDLLGRAGELREVLRFIENMPI 589

Query: 499 KPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEV 558
            P++RI  SL++A R    +++AE  A ++ + E  N   Y +LS + +++G W   E +
Sbjct: 590 APTSRIWGSLLTASRNKNDIDIAEYAAERIFQLEHNNTGCYVVLSSMYADAGRWEDVERI 649

Query: 559 WRVMRAKGLSKSYGFSRIE 577
             +M+ KGL ++   S +E
Sbjct: 650 RSLMKEKGLRRTEARSLVE 668



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 151/299 (50%), Gaps = 3/299 (1%)

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           MI G  D+      +  +RAM   G +P R T  +VL  CA    L  G+A H      G
Sbjct: 91  MIRGFADADLPLDALAAYRAMLDAGARPDRFTFPVVLKCCARAGALGEGRAAHAAVIKLG 150

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
              D + + +L+ +Y +    +  A  +F+    +D+V W++++ GY  +G  + A+  F
Sbjct: 151 LGADVYTANSLVALYAKLG-LVGDAERVFDGMPARDIVSWNTMVDGYVSNGMGALALACF 209

Query: 322 SRMRLE-RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
             M    ++  +SV ++A L++C  +S L+ G  +H Y ++ GL  DV +G +L++MY K
Sbjct: 210 REMNDALQVGHDSVGVIAALAACCLESALALGREIHGYAIRHGLEQDVKVGTSLVDMYCK 269

Query: 381 CGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
           CG++  +  +F +M  R  V+W  +I GY  +    +A   F++M+  G + + +T + +
Sbjct: 270 CGNVFFAENVFAKMPLRTVVTWNCMIGGYALNERPVDAFDCFMQMRVDGFQVEVVTAINL 329

Query: 441 LSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           L+AC          ++   V++   +   +   A  +++ GK GK+E + K+   +  K
Sbjct: 330 LTACAQTESSLFGRSVHAYVVRRHFLPHVVLETA-LLEMYGKVGKVESSEKIFGQITDK 387


>gi|222637655|gb|EEE67787.1| hypothetical protein OsJ_25518 [Oryza sativa Japonica Group]
          Length = 588

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 177/549 (32%), Positives = 290/549 (52%), Gaps = 12/549 (2%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           SG     A+  +V  + A  +       QLH  A +SG  AD  + N+L++ Y++     
Sbjct: 4   SGAVRPDAVTCTVALSLAAGRGEGFLVRQLHALAWRSGLAADVFVGNALVTAYSRGGSLG 63

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNG-FYVRSLEMFREMYLCGFVLKAEL-LAGIISL 138
            A  +FD+MP RD +SWN++I    Q+G      + +F  M   G V    + +  +I  
Sbjct: 64  EARSVFDDMPARDLVSWNALICGLAQDGDCPAEVIGVFLRMLRDGDVQPDRISVCSVIPA 123

Query: 139 CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
           C   G+LELGRQ+H   +  G  E  V +   L+ +Y KC     A R+F+ M  R+ VS
Sbjct: 124 CGGEGKLELGRQVHGFAVKLG-VEGYVSIGNVLVAMYYKCGAPGSARRLFDAMSERDVVS 182

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258
           WT  IS  +D ++    + LF  M+R+GV P  VT   ++ A       R  + +H    
Sbjct: 183 WTTAIS--MDGED---ALTLFNGMRRDGVPPNEVTFVALMSALPADCPARGAQMVHAACL 237

Query: 259 CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAM 318
                 +   S +L+ MY +    +  AR++F+    ++++ W+++I GY+Q+G  ++A+
Sbjct: 238 KAAVSGEAAASNSLITMYAKARR-MDDARMVFDLMPRREIIAWNAVISGYAQNGRCNDAL 296

Query: 319 KLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG--VHCYIMKAGLNFDVSIGNALMN 376
           +LFS M    + PN  T  ++LS+ T    +S   G   H   +  G      +  AL++
Sbjct: 297 ELFSSM-ARCLTPNETTFASVLSAVTAVETVSMAYGQMYHSRALSMGFGDSEYVAGALID 355

Query: 377 MYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAIT 436
           MY+K G++  S + F+E   R  ++WT +IS    HG     + LF +M  SGV PD + 
Sbjct: 356 MYAKRGNLEESRKAFHETEQRSLIAWTAIISANARHGSYGAVMSLFGDMARSGVAPDGVV 415

Query: 437 VLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
           +LA+L+AC + G+V     +F+++  ++ + L  EHY+C VD+LG++G++ +A +++  M
Sbjct: 416 LLAVLTACRYGGMVDAGRDIFDSMAADRGVELWPEHYSCVVDMLGRAGRLAEAEELMMRM 475

Query: 497 PMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAE 556
           P  PS   L SL+ ACRIHG  E+ E +A  L E EP  +  Y LLS + ++ G+W G  
Sbjct: 476 PAGPSVSALQSLLGACRIHGDAEIGERIARILTEKEPTESGAYVLLSNIYADVGDWDGVA 535

Query: 557 EVWRVMRAK 565
           +V R MR K
Sbjct: 536 KVRRKMRDK 544


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 163/543 (30%), Positives = 304/543 (55%), Gaps = 34/543 (6%)

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           NS+++ YAK    + A +LF+ MP RD +SWN +++  +Q+G    +L +  +M+  G  
Sbjct: 232 NSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVR 291

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
           L +      ++ C+++  L  G+Q+HA VI      +  +V++A+++LY+KC  +  A R
Sbjct: 292 LDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPC-IDPYVASAMVELYAKCGCFKEARR 350

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VF  +  RN VSWT +I G +    +   ++LF  M+ E +   +  L  ++  C+   D
Sbjct: 351 VFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMD 410

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           +   + +H  +   G      +S +L+ MY +C   L  A  IF   + +D+V W+ ++ 
Sbjct: 411 MCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGN-LQNAESIFSSMEERDIVSWTGMLT 469

Query: 307 GYSQSGDLSEA-------------------------------MKLFSRMRLER-IEPNSV 334
            YSQ G++ +A                               +K++S M  E+ + P+ V
Sbjct: 470 AYSQVGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWV 529

Query: 335 TLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEM 394
           T + +   C        G  +  + +K GL  D S+ NA++ MYSKCG I+ + +IF+ +
Sbjct: 530 TYVTLFRGCADMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDFL 589

Query: 395 AARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAE 454
           + +D VSW  +I+GY  HG G++A+++F +M + G +PD I+ +A+LS+C+H+GLV+E +
Sbjct: 590 SRKDLVSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGK 649

Query: 455 TLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRI 514
             F+ + ++  ++  +EH++C VDLL ++G + +A  ++  MPMKP+  +  +L+SAC+ 
Sbjct: 650 FYFDMLKRDHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLSACKT 709

Query: 515 HGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFS 574
           HG  E+AE+ A  L + +  ++  Y LL+ + +++G  + + +V ++MR KG+ K+ G+S
Sbjct: 710 HGNNELAELAAKHLFDLDSPDSGGYMLLAKIYADAGKSVDSAQVRKLMRDKGIKKNPGYS 769

Query: 575 RIE 577
            +E
Sbjct: 770 WME 772



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 140/556 (25%), Positives = 247/556 (44%), Gaps = 67/556 (12%)

Query: 59  SDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFR 118
           ++ + +  N +++ YAK      A +LF  MP RD  SWN++++ + Q+G ++ ++E F 
Sbjct: 91  TEPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFV 150

Query: 119 EMYLCGFVLKAELLAG-IISLCSQIGELELGRQIHALV--------------IVD----- 158
            M   G  L      G  +  C  +G  E+  Q+  L+              IVD     
Sbjct: 151 SMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRC 210

Query: 159 GSFEL-----------SVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCI 207
           G+ +            +VF   ++L  Y+K +    AL +FE M  R+ VSW  M+S   
Sbjct: 211 GAVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALS 270

Query: 208 DSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
            S      + +   M   GV+    T T  L ACA+L  L  GK +H          D +
Sbjct: 271 QSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPY 330

Query: 268 LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
           +++A++ +Y +C      AR +F   + ++ V W+ +I G+ Q G  SE+++LF++MR E
Sbjct: 331 VASAMVELYAKCG-CFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAE 389

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
            +  +   L  I+S C+ +  +     +H   +K+G    V I N+L++MY+KCG++ ++
Sbjct: 390 LMTVDQFALATIISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNA 449

Query: 388 HQIFNEMAARDFVSWTTLISGYG-------------------------------FHGYGE 416
             IF+ M  RD VSWT +++ Y                                 HG  E
Sbjct: 450 ESIFSSMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEE 509

Query: 417 EALQLFLEM-QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC 475
           + L+++  M  E  V PD +T + +   C   G  K  + +  + +K   I L       
Sbjct: 510 DGLKMYSAMLTEKDVIPDWVTYVTLFRGCADMGANKLGDQITGHTVKVGLI-LDTSVMNA 568

Query: 476 YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA-EMLAHQLIEAEPE 534
            + +  K G+I +A K+   +  K      +++++    HG  + A E+    L +    
Sbjct: 569 VITMYSKCGRISEARKIFDFLSRKDLVS-WNAMITGYSQHGMGKQAIEIFDDMLKKGAKP 627

Query: 535 NAANYTLLSMVCSESG 550
           +  +Y  +   CS SG
Sbjct: 628 DYISYVAVLSSCSHSG 643



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 117/439 (26%), Positives = 209/439 (47%), Gaps = 43/439 (9%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           ++H  G+  ++    S + ACA   +   +G QLH   ++S    DP ++++++ +YAK 
Sbjct: 284 DMHNRGVRLDSTTYTSSLTACAKLSS-LGWGKQLHAQVIRSLPCIDPYVASAMVELYAKC 342

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
              + A ++F  +  R+T+SW  +I  F Q G +  SLE+F +M      +    LA II
Sbjct: 343 GCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATII 402

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH---------------- 180
           S CS   ++ L RQ+H+L +  G    +V +S +L+ +Y+KC +                
Sbjct: 403 SGCSNRMDMCLARQLHSLSLKSGHTR-AVVISNSLISMYAKCGNLQNAESIFSSMEERDI 461

Query: 181 --WLIALRVFEQ-------------MVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
             W   L  + Q             M  RN ++W AM+   I     + G+ ++ AM  E
Sbjct: 462 VSWTGMLTAYSQVGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTE 521

Query: 226 -GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
             V P  VT   +   CA++   + G  I G+    G   D  +  A++ MY +C   + 
Sbjct: 522 KDVIPDWVTYVTLFRGCADMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGR-IS 580

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
            AR IF+    KD+V W+++I GYSQ G   +A+++F  M  +  +P+ ++ +A+LSSC+
Sbjct: 581 EARKIFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCS 640

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIG----NALMNMYSKCGSITSSHQIFNEMAARDFV 400
               +  G     Y      + +VS G    + ++++ ++ G++  +  + +EM  +   
Sbjct: 641 HSGLVQEG---KFYFDMLKRDHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTA 697

Query: 401 S-WTTLISGYGFHGYGEEA 418
             W  L+S    HG  E A
Sbjct: 698 EVWGALLSACKTHGNNELA 716



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 151/369 (40%), Gaps = 69/369 (18%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           + ++L L+ Q +    +  +   L ++I  C+  +       QLH  +LKSG     VIS
Sbjct: 376 FSESLELFNQ-MRAELMTVDQFALATIISGCS-NRMDMCLARQLHSLSLKSGHTRAVVIS 433

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           NSLISMYAK    ++A  +F  M  RD +SW  ++  ++Q G   ++ E F  M     +
Sbjct: 434 NSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMSTRNVI 493

Query: 127 LKAELLAGIISL--------------------------------CSQIGELELGRQIHAL 154
               +L   I                                  C+ +G  +LG QI   
Sbjct: 494 TWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTLFRGCADMGANKLGDQITGH 553

Query: 155 VIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDT 214
            +  G   L   V  A++ +YSKC     A ++F+ +  ++ VSW AMI+G         
Sbjct: 554 TVKVG-LILDTSVMNAVITMYSKCGRISEARKIFDFLSRKDLVSWNAMITGYSQHGMGKQ 612

Query: 215 GIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMH 274
            I++F  M ++G KP  ++   VL +C+      +G    G  Y      DH++S  L H
Sbjct: 613 AIEIFDDMLKKGAKPDYISYVAVLSSCSH-----SGLVQEGKFYFDMLKRDHNVSPGLEH 667

Query: 275 MYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSV 334
             C                          ++   +++G+L EA  L   M +   +P + 
Sbjct: 668 FSC--------------------------MVDLLARAGNLIEAKNLIDEMPM---KPTAE 698

Query: 335 TLLAILSSC 343
              A+LS+C
Sbjct: 699 VWGALLSAC 707



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 117/308 (37%), Gaps = 68/308 (22%)

Query: 254 HGYAYCCGFDFDHHLSAALMHMYCEC--------------TE-----------------A 282
           HG     G      L   L+H Y  C              TE                 +
Sbjct: 51  HGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLRGDITEPNVITHNIMMNGYAKLGS 110

Query: 283 LHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE-PNSVTLLAILS 341
           L  A  +F R   +DV  W++++ GY QSG   +AM+ F  MR      PN+ T    + 
Sbjct: 111 LSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGCAMK 170

Query: 342 SCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSIT-SSHQ----------- 389
           SC    +    L +   + K G   D  +   +++M+ +CG++  +S Q           
Sbjct: 171 SCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIERPTVFC 230

Query: 390 -------------------IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV 430
                              +F  M  RD VSW  ++S     G   EAL + ++M   GV
Sbjct: 231 RNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGV 290

Query: 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIED 488
             D+ T  + L+AC     +   + L   V++       I+ Y  +  V+L  K G  ++
Sbjct: 291 RLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLP---CIDPYVASAMVELYAKCGCFKE 347

Query: 489 ACKVVSTM 496
           A +V S++
Sbjct: 348 ARRVFSSL 355



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 97/204 (47%), Gaps = 20/204 (9%)

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
           N +MN Y+K GS++ + ++F  M  RD  SW TL+SGY   G   +A++ F+ M+ SG  
Sbjct: 99  NIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDS 158

Query: 432 -PDAITVLAILSACNHAGLVKEAETLFNNVMK-----EKKIALAIEHYACYVDLLGKSGK 485
            P+A T    + +C   G  + A  L   + K     +  +A  I      VD+  + G 
Sbjct: 159 LPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGI------VDMFVRCGA 212

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSA-CRIHGRLEVAEMLAHQLIEAEPE-NAANYTLLS 543
           ++ A K  S +  +P+    +S+++   + +G     E     L E+ PE +  ++ ++ 
Sbjct: 213 VDFASKQFSQIE-RPTVFCRNSMLAGYAKSYGVDHALE-----LFESMPERDVVSWNMMV 266

Query: 544 MVCSESGNWLGAEEVWRVMRAKGL 567
              S+SG    A  V   M  +G+
Sbjct: 267 SALSQSGRAREALSVAVDMHNRGV 290


>gi|224121686|ref|XP_002318647.1| predicted protein [Populus trichocarpa]
 gi|222859320|gb|EEE96867.1| predicted protein [Populus trichocarpa]
          Length = 744

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 182/580 (31%), Positives = 321/580 (55%), Gaps = 15/580 (2%)

Query: 7   YEQTLHLYKQELHP-SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           Y ++L ++++ +    G Y N     + + +CA  +   H GL++H   +K G D+D  +
Sbjct: 121 YVKSLVMFRRMVKECGGSYHNRVACLAALSSCASIKCLTH-GLEIHGFLVKKGVDSDEFL 179

Query: 66  SNSLISMYAKFSKPESAYQLF-----DEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
            ++LI MY K    ++A  +F     +E+  R+   WN +I  +  N     +LE+F EM
Sbjct: 180 VSALIEMYMKCGDIKNAENVFERIRDNELVGRNMAVWNVMILGYVSNECLSLALELFVEM 239

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
              G    +  +  ++ LCSQ+ +L +G+QIH L++  G  +  V V TAL+++Y KC  
Sbjct: 240 LELGISPDSSTVVVVLVLCSQLLDLAVGKQIHGLILGLG-LDDDVRVGTALMEMYFKCGD 298

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
              +L++F++    N V W +++  C  +   +  ++ F     +   P  V L   L A
Sbjct: 299 PETSLQIFKRSQNHNLVMWGSVMLNCAQNGYPNEALEFFSEFMLDCGFPDPVILLAALRA 358

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
           C+ L     G AIHG+A   GFD D  +  AL+  Y +C + +  A+ +F     +D+V 
Sbjct: 359 CSFLSLKPRGMAIHGFAIKMGFDSDVFVGGALVDFYGKCGD-MEYAQQVFYGLSTRDLVS 417

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           W+++I G++Q+    EA+K F  M+ ++I+PN+VT+  ILS CT  S +     VHCY++
Sbjct: 418 WNALISGFAQNKCADEALKAFRDMQSKQIKPNTVTMACILSVCTHLSVMILCKEVHCYLL 477

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
           +     +  + N+L++ Y+KCG I SS  +F ++  R+ V+W +++ G+G HG  +E   
Sbjct: 478 RHWFETNALVNNSLISAYAKCGDIHSSRTVFEKLPVRNEVTWNSILLGFGMHGRTDEMFA 537

Query: 421 LFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLL 480
            F +M+E+ ++PD  T  ++LS+C+H+G V      FN++M++  +   +E Y C VDLL
Sbjct: 538 TFEKMKEANIKPDHGTFTSLLSSCSHSGKVDAGWKYFNSMMEDYNLEPRVEQYTCMVDLL 597

Query: 481 GKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYT 540
           G++G +  A  ++ +MP  P  RI  SL+++C+ HG  ++AE++A+ + E +  +     
Sbjct: 598 GRAGNLNQAYDLIMSMPCSPDDRIWGSLLASCKNHGNTKLAEVVANHIFELDASSVGYRV 657

Query: 541 LLSMVCSESGNWLGAEEVWRV---MRAKGLSKSYGFSRIE 577
           LL+ +  +SGN     EV+RV   ++  GL K  G S IE
Sbjct: 658 LLANLYEDSGN---LNEVFRVRTDIKQMGLKKQPGCSWIE 694



 Score =  253 bits (647), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 182/571 (31%), Positives = 289/571 (50%), Gaps = 49/571 (8%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           F+E  + +Y   +            P +IKA        + G Q+H   LK G   D  +
Sbjct: 18  FFEDAIRVYLDFIECGFPVEEFRFFPCLIKAFG-GLYDVNKGKQIHGHLLKFGFLQDIFV 76

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL-CG 124
            NSL+ MY K     +A  +F+ M  RD++SWN++I+ F Q+G YV+SL MFR M   CG
Sbjct: 77  KNSLLGMYWKCGAGGNAVDMFERMEERDSVSWNTMISGFCQSGDYVKSLVMFRRMVKECG 136

Query: 125 --FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL 182
             +  +   LA + S C+ I  L  G +IH  ++  G  +   F+ +AL+++Y KC    
Sbjct: 137 GSYHNRVACLAALSS-CASIKCLTHGLEIHGFLVKKG-VDSDEFLVSALIEMYMKCGDIK 194

Query: 183 IALRVFE-----QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIV 237
            A  VFE     ++V RN   W  MI G + ++     ++LF  M   G+ P   T+ +V
Sbjct: 195 NAENVFERIRDNELVGRNMAVWNVMILGYVSNECLSLALELFVEMLELGISPDSSTVVVV 254

Query: 238 LLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKD 297
           L+ C++L DL  GK IHG     G D D  +  ALM MY +C +    +  IF+R++  +
Sbjct: 255 LVLCSQLLDLAVGKQIHGLILGLGLDDDVRVGTALMEMYFKCGDP-ETSLQIFKRSQNHN 313

Query: 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHC 357
           +V+W S++   +Q+G  +EA++ FS   L+   P+ V LLA L +C+  S    G+ +H 
Sbjct: 314 LVMWGSVMLNCAQNGYPNEALEFFSEFMLDCGFPDPVILLAALRACSFLSLKPRGMAIHG 373

Query: 358 YIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEE 417
           + +K G + DV +G AL++ Y KCG +  + Q+F  ++ RD VSW  LISG+  +   +E
Sbjct: 374 FAIKMGFDSDVFVGGALVDFYGKCGDMEYAQQVFYGLSTRDLVSWNALISGFAQNKCADE 433

Query: 418 ALQLFLEMQESGVEPDAITVLAILSACNHAGLVK--------------EAETLFNNVMKE 463
           AL+ F +MQ   ++P+ +T+  ILS C H  ++               E   L NN +  
Sbjct: 434 ALKAFRDMQSKQIKPNTVTMACILSVCTHLSVMILCKEVHCYLLRHWFETNALVNNSL-- 491

Query: 464 KKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEM 523
                 I  YA       K G I  +  V   +P++      +S++    +HGR +  EM
Sbjct: 492 ------ISAYA-------KCGDIHSSRTVFEKLPVRNEV-TWNSILLGFGMHGRTD--EM 535

Query: 524 LA--HQLIEA--EPENAANYTLLSMVCSESG 550
            A   ++ EA  +P++    +LLS  CS SG
Sbjct: 536 FATFEKMKEANIKPDHGTFTSLLS-SCSHSG 565



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 135/426 (31%), Positives = 212/426 (49%), Gaps = 21/426 (4%)

Query: 93  DTISWNSIINCFTQNGFYVRSLEMFREMYLCGF-VLKAELLAGIISLCSQIGELELGRQI 151
           D    N +I   T++GF+  ++ ++ +   CGF V +      +I     + ++  G+QI
Sbjct: 2   DVSKVNRMIKECTEDGFFEDAIRVYLDFIECGFPVEEFRFFPCLIKAFGGLYDVNKGKQI 61

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQN 211
           H  ++  G F   +FV  +LL +Y KC     A+ +FE+M  R+ VSW  MISG   S +
Sbjct: 62  HGHLLKFG-FLQDIFVKNSLLGMYWKCGAGGNAVDMFERMEERDSVSWNTMISGFCQSGD 120

Query: 212 YDTGIDLFRAMQRE--GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS 269
           Y   + +FR M +E  G    RV     L +CA ++ L +G  IHG+    G D D  L 
Sbjct: 121 YVKSLVMFRRMVKECGGSYHNRVACLAALSSCASIKCLTHGLEIHGFLVKKGVDSDEFLV 180

Query: 270 AALMHMYCECTEALHPARIIFERTKVKDVV-----IWSSIIRGYSQSGDLSEAMKLFSRM 324
           +AL+ MY +C + +  A  +FER +  ++V     +W+ +I GY  +  LS A++LF  M
Sbjct: 181 SALIEMYMKCGD-IKNAENVFERIRDNELVGRNMAVWNVMILGYVSNECLSLALELFVEM 239

Query: 325 RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSI 384
               I P+S T++ +L  C++   L+ G  +H  I+  GL+ DV +G ALM MY KCG  
Sbjct: 240 LELGISPDSSTVVVVLVLCSQLLDLAVGKQIHGLILGLGLDDDVRVGTALMEMYFKCGDP 299

Query: 385 TSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
            +S QIF      + V W +++     +GY  EAL+ F E       PD + +LA L AC
Sbjct: 300 ETSLQIFKRSQNHNLVMWGSVMLNCAQNGYPNEALEFFSEFMLDCGFPDPVILLAALRAC 359

Query: 445 NHAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPS 501
           +   L      +    +K   +  + +        VD  GK G +E A +V   +    S
Sbjct: 360 SFLSLKPRGMAIHGFAIKMGFDSDVFVG----GALVDFYGKCGDMEYAQQVFYGL----S 411

Query: 502 TRILSS 507
           TR L S
Sbjct: 412 TRDLVS 417


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 187/601 (31%), Positives = 310/601 (51%), Gaps = 35/601 (5%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           +Q + LY Q L   G+  +    P ++ AC+        G+Q+H   LK G + D  +SN
Sbjct: 112 DQAILLYVQML-VMGIVPDKYTFPFLLSACSKILALSE-GVQVHGAVLKMGLEGDIFVSN 169

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           SLI  YA+  K +   +LFD M  R+ +SW S+IN ++       ++ +F +M   G   
Sbjct: 170 SLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEP 229

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
               +  +IS C+++ +LELG+++ +  I +   ELS  +  AL+D+Y KC     A ++
Sbjct: 230 NPVTMVCVISACAKLKDLELGKKVCSY-ISELGMELSTIMVNALVDMYMKCGDICAARQI 288

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F++   +N V +  ++S  +  +     + +   M ++G +P +VT+   + ACA+L DL
Sbjct: 289 FDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDL 348

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
             GK+ H Y    G +   ++S A++ MY +C +    A  +FE    K VV W+S+I G
Sbjct: 349 SVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKR-EAACKVFEHMPNKTVVTWNSLIAG 407

Query: 308 YSQSGDLS-------------------------------EAMKLFSRMRLERIEPNSVTL 336
             + GD+                                EA++LF  M+ + I  + VT+
Sbjct: 408 LVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTM 467

Query: 337 LAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA 396
           + I S+C     L     V  YI K  ++ D+ +G AL++M+S+CG  +S+  +F  M  
Sbjct: 468 VGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEK 527

Query: 397 RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETL 456
           RD  +WT  I      G  E A++LF EM E  V+PD +  +A+L+AC+H G V +   L
Sbjct: 528 RDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQL 587

Query: 457 FNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG 516
           F ++ K   I   I HY C VDLLG++G +E+A  ++ +MP++P+  +  SL++ACR H 
Sbjct: 588 FWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVWGSLLAACRKHK 647

Query: 517 RLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
            +E+A   A +L +  PE    + LLS + + +G W     V   M+ KG+ K  G S I
Sbjct: 648 NVELAHYAAEKLTQLAPERVGIHVLLSNIYASAGKWTDVARVRLQMKEKGVQKVPGSSSI 707

Query: 577 E 577
           E
Sbjct: 708 E 708



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 154/560 (27%), Positives = 263/560 (46%), Gaps = 46/560 (8%)

Query: 49  QLHCTALKSGSDADPVISN--SLISMYAKFSKPES---AYQLF--DEMPYRDTISWNSII 101
           QLHC  +K G       SN   LI+   +    ES   A   F  D+        +N +I
Sbjct: 43  QLHCDMMKKGLLCHKPASNLNKLIASSVQIGTLESLDYARNAFGDDDGNMASLFMYNCLI 102

Query: 102 NCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSF 161
             +   G   +++ ++ +M + G V        ++S CS+I  L  G Q+H  V+  G  
Sbjct: 103 RGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVLKMG-L 161

Query: 162 ELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRA 221
           E  +FVS +L+  Y++C    +  ++F+ M+ RN VSWT++I+G          + LF  
Sbjct: 162 EGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQ 221

Query: 222 MQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTE 281
           M   GV+P  VT+  V+ ACA+L+DL  GK +  Y    G +    +  AL+ MY +C +
Sbjct: 222 MGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKCGD 281

Query: 282 ALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILS 341
            +  AR IF+    K++V++++I+  Y      S+ + +   M  +   P+ VT+L+ ++
Sbjct: 282 -ICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIA 340

Query: 342 SCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC-------------------- 381
           +C +   LS G   H Y+++ GL    +I NA+++MY KC                    
Sbjct: 341 ACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVT 400

Query: 382 -----------GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV 430
                      G +  + +IF+EM  RD VSW T+I         EEA++LF EMQ  G+
Sbjct: 401 WNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGI 460

Query: 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDAC 490
             D +T++ I SAC + G +  A+ +   + K   I + ++     VD+  + G    A 
Sbjct: 461 PGDRVTMVGIASACGYLGALDLAKWVCTYIEK-NDIHVDLQLGTALVDMFSRCGDPSSAM 519

Query: 491 KVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE--AEPENAANYTLLSMVCSE 548
            V   M  K      ++ +    + G  E A  L ++++E   +P++     LL+  CS 
Sbjct: 520 HVFKRME-KRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLT-ACSH 577

Query: 549 SGNW-LGAEEVWRVMRAKGL 567
            G+   G +  W + +A G+
Sbjct: 578 GGSVDQGRQLFWSMEKAHGI 597


>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like, partial [Vitis vinifera]
          Length = 621

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 173/475 (36%), Positives = 266/475 (56%), Gaps = 34/475 (7%)

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH-------------- 180
           ++ LC Q+  L+ G ++HA     G F   V +S  +LD+Y KC+               
Sbjct: 95  LLQLCLQLRALDEGMKVHAHTKTSG-FVPGVVISNRILDMYIKCNSLVNAKRLFDEMAER 153

Query: 181 ----WLI-------------ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQ 223
               W I             A ++F+QM  R+  SWTAM SG +    ++  ++LFRAMQ
Sbjct: 154 DLCSWNIMISGYAKAGRLQEARKLFDQMTERDNFSWTAMTSGYVRHDQHEEALELFRAMQ 213

Query: 224 R-EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEA 282
           R E  K  + T++  L A A ++ L  GK IHG+    G D D  + +AL  MY +C  +
Sbjct: 214 RHENFKCNKFTMSSALAASAAIQSLHLGKEIHGHILRIGLDLDGVVWSALSDMYGKCG-S 272

Query: 283 LHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSS 342
           +  AR IF++T  +DVV W+++I  Y + G   E   LFS +    I PN  T   +L++
Sbjct: 273 IGEARHIFDKTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWPNEFTFSGVLNA 332

Query: 343 CTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSW 402
           C   +    G  VH Y+ + G +      + L++MY+KCG+I ++ ++FN M   D VSW
Sbjct: 333 CADHAAEELGKQVHGYMTRIGFDPSSFAASTLVHMYTKCGNIKNARRVFNGMPRPDLVSW 392

Query: 403 TTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462
           T+LISGY  +G  +EALQ F  + +SG +PD IT + +LSAC HAGLV +    F+++ +
Sbjct: 393 TSLISGYAQNGQPDEALQFFELLLKSGTQPDHITFVGVLSACTHAGLVDKGLEYFDSIKE 452

Query: 463 EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAE 522
           +  +    +HYAC +DLL +SG++++A  ++  MP++P   + +SL+  CRIHG L++A+
Sbjct: 453 KHGLTHTADHYACLIDLLSRSGRLQEAEDIIDKMPIEPDKFLWASLLGGCRIHGNLKLAK 512

Query: 523 MLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
             A  L E EPEN A YT L+ + + +G W G  EV +VM A+G+ K  G S IE
Sbjct: 513 RAAEALFEIEPENPATYTTLANIYATAGLWGGVAEVRKVMDARGVVKKPGLSWIE 567



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 131/440 (29%), Positives = 204/440 (46%), Gaps = 43/440 (9%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G+++H     SG     VISN ++ MY K +   +A +LFDEM  RD  SWN +I+ + +
Sbjct: 108 GMKVHAHTKTSGFVPGVVISNRILDMYIKCNSLVNAKRLFDEMAERDLCSWNIMISGYAK 167

Query: 107 NGF-------------------------YVR------SLEMFREMYLC-GFVLKAELLAG 134
            G                          YVR      +LE+FR M     F      ++ 
Sbjct: 168 AGRLQEARKLFDQMTERDNFSWTAMTSGYVRHDQHEEALELFRAMQRHENFKCNKFTMSS 227

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
            ++  + I  L LG++IH  ++  G  +L   V +AL D+Y KC     A  +F++ V R
Sbjct: 228 ALAASAAIQSLHLGKEIHGHILRIG-LDLDGVVWSALSDMYGKCGSIGEARHIFDKTVDR 286

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
           + VSWTAMI         + G  LF  + + G+ P   T + VL ACA+      GK +H
Sbjct: 287 DVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWPNEFTFSGVLNACADHAAEELGKQVH 346

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
           GY    GFD     ++ L+HMY +C   +  AR +F      D+V W+S+I GY+Q+G  
Sbjct: 347 GYMTRIGFDPSSFAASTLVHMYTKCGN-IKNARRVFNGMPRPDLVSWTSLISGYAQNGQP 405

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM-KAGLNFDVSIGNA 373
            EA++ F  +     +P+ +T + +LS+CT    +  GL     I  K GL         
Sbjct: 406 DEALQFFELLLKSGTQPDHITFVGVLSACTHAGLVDKGLEYFDSIKEKHGLTHTADHYAC 465

Query: 374 LMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFHG---YGEEALQLFLEMQESG 429
           L+++ S+ G +  +  I ++M    D   W +L+ G   HG     + A +   E++   
Sbjct: 466 LIDLLSRSGRLQEAEDIIDKMPIEPDKFLWASLLGGCRIHGNLKLAKRAAEALFEIEPEN 525

Query: 430 VEPDAITVLAILSACNHAGL 449
             P   T LA + A   AGL
Sbjct: 526 --PATYTTLANIYAT--AGL 541



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 137/301 (45%), Gaps = 13/301 (4%)

Query: 45  HFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCF 104
           H G ++H   L+ G D D V+ ++L  MY K      A  +FD+   RD +SW ++I+ +
Sbjct: 239 HLGKEIHGHILRIGLDLDGVVWSALSDMYGKCGSIGEARHIFDKTVDRDVVSWTAMIDRY 298

Query: 105 TQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELS 164
            + G       +F ++   G        +G+++ C+     ELG+Q+H  +   G F+ S
Sbjct: 299 FKEGRREEGFALFSDLLKSGIWPNEFTFSGVLNACADHAAEELGKQVHGYMTRIG-FDPS 357

Query: 165 VFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR 224
            F ++ L+ +Y+KC +   A RVF  M   + VSWT++ISG   +   D  +  F  + +
Sbjct: 358 SFAASTLVHMYTKCGNIKNARRVFNGMPRPDLVSWTSLISGYAQNGQPDEALQFFELLLK 417

Query: 225 EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYC-----EC 279
            G +P  +T   VL AC        G    G  Y       H L+    H  C       
Sbjct: 418 SGTQPDHITFVGVLSACTHA-----GLVDKGLEYFDSIKEKHGLTHTADHYACLIDLLSR 472

Query: 280 TEALHPARIIFERTKVK-DVVIWSSIIRGYSQSGDLSEAMKLFSRM-RLERIEPNSVTLL 337
           +  L  A  I ++  ++ D  +W+S++ G    G+L  A +    +  +E   P + T L
Sbjct: 473 SGRLQEAEDIIDKMPIEPDKFLWASLLGGCRIHGNLKLAKRAAEALFEIEPENPATYTTL 532

Query: 338 A 338
           A
Sbjct: 533 A 533


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 176/593 (29%), Positives = 311/593 (52%), Gaps = 34/593 (5%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           ++L   G   +    P V+ AC  +      G Q+H   +K G + D  + NSLI  Y +
Sbjct: 128 RQLMCMGAVPDNFTFPFVLSACTKSAALTE-GFQVHGAIVKMGFERDMFVENSLIHFYGE 186

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
             + +   ++FD+M  R+ +SW S+I  + + G Y  ++ +F EM   G    +  + G+
Sbjct: 187 CGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGV 246

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           IS C+++ +L+LG Q+    I +   E++  +  AL+D+Y KC     A ++F++ V +N
Sbjct: 247 ISACAKLQDLQLGEQV-CTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKN 305

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
            V +  ++S  +        + +   M + G +P R+T+   + AC+EL D+  GK  HG
Sbjct: 306 LVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHG 365

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL- 314
           Y    G +   ++  A+++MY +C +     R+ F+R   K  V W+S+I G+ ++GD+ 
Sbjct: 366 YVLRNGLEGWDNVCNAIINMYMKCGKQEMACRV-FDRMLNKTRVSWNSLIAGFVRNGDME 424

Query: 315 ------------------------------SEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
                                          EA++LF  M+ E I  + VT++ + S+C 
Sbjct: 425 SAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACG 484

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
               L     +H YI K  ++FD+ +G AL++M+++CG   S+ Q+FN+M  RD  +WT 
Sbjct: 485 YLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTA 544

Query: 405 LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK 464
            I      G G  A++LF EM + G++PD +  +A+L+A +H GLV++   +F ++    
Sbjct: 545 AIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSMKDIY 604

Query: 465 KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEML 524
            IA    HY C VDLLG++G + +A  ++++M M+P+  I  SL++ACR+H  +++A   
Sbjct: 605 GIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAACRVHKNVDIAAYA 664

Query: 525 AHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           A ++ E +PE    + LLS + + +G W    +V   ++ KG  K  G S IE
Sbjct: 665 AERISELDPERTGIHVLLSNIYASAGRWDDVAKVRLHLKEKGAHKMPGSSSIE 717



 Score =  191 bits (485), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 151/570 (26%), Positives = 271/570 (47%), Gaps = 57/570 (10%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPES------AYQLF--DEMPYRDTISWNSI 100
           QLH    K+G +  P+   +LIS   +    ES      A +LF  D         ++S+
Sbjct: 51  QLHSQITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQKALELFIEDNGIMGTHYMFSSL 110

Query: 101 INCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGS 160
           I  F+  G   +++ +FR++   G V        ++S C++   L  G Q+H  ++  G 
Sbjct: 111 IRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIVKMG- 169

Query: 161 FELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFR 220
           FE  +FV  +L+  Y +C       RVF++M  RN VSWT++I G      Y   + LF 
Sbjct: 170 FERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFF 229

Query: 221 AMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG---FDFDHHLSAALMHMYC 277
            M   G++P  VT+  V+ ACA+L+DL+ G+ +     C G    + +  +  AL+ MY 
Sbjct: 230 EMVEVGIRPNSVTMVGVISACAKLQDLQLGEQV---CTCIGELELEVNALMVNALVDMYM 286

Query: 278 ECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLL 337
           +C  A+  AR IF+    K++V++++I+  Y + G   E + +   M      P+ +T+L
Sbjct: 287 KCG-AIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITML 345

Query: 338 AILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR 397
           + +S+C+    +S G   H Y+++ GL    ++ NA++NMY KCG    + ++F+ M  +
Sbjct: 346 SAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNK 405

Query: 398 DFVSWTTLISGYGFHGYGE-------------------------------EALQLFLEMQ 426
             VSW +LI+G+  +G  E                               EA++LF  MQ
Sbjct: 406 TRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQ 465

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
             G+  D +T++ + SAC + G +  A+ + +  +K+K I   +      VD+  + G  
Sbjct: 466 SEGITADKVTMVGVASACGYLGALDLAKWI-HGYIKKKDIHFDMHLGTALVDMFARCGDP 524

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLSM 544
           + A +V + M +K      ++ + A  + G    A  L  ++++   +P+      LL+ 
Sbjct: 525 QSAMQVFNKM-VKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTA 583

Query: 545 VCSESGNWLGAEEVWRVMRAKGLSKSYGFS 574
           + S  G     E+ W + R+  +   YG +
Sbjct: 584 L-SHGGL---VEQGWHIFRS--MKDIYGIA 607


>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  308 bits (789), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 174/534 (32%), Positives = 291/534 (54%), Gaps = 6/534 (1%)

Query: 46  FGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT 105
           FG Q H  A+K     D  + +SL++MY K      A ++FD MP R+ ++W ++I+ + 
Sbjct: 129 FGQQAHAVAIKMACFYDVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMISGYA 188

Query: 106 QNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSV 165
                  + E+F  M      +       ++S  +    ++ G+QIH L +  G   L V
Sbjct: 189 IQRLAGEAFEVFELMRREEEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKTG---LLV 245

Query: 166 FVS--TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQ 223
           F+S   AL+ +Y+KC     +L+VFE    +N ++W+AMI+G   S +    + LF  M 
Sbjct: 246 FLSILNALVTMYAKCGSLDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMH 305

Query: 224 REGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEAL 283
             G+ P+  TL  VL AC++   +  GK +H Y    GF+   ++  AL+ MY + +   
Sbjct: 306 FAGINPSEFTLVGVLNACSDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAK-SGVT 364

Query: 284 HPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC 343
             AR  F   +  D+V+W+S+I GY Q+G+  +A+ L+ RM++E I PN +T+ ++L +C
Sbjct: 365 EDARKGFNYLQQPDLVLWTSMIAGYVQNGENEDALSLYCRMQMEGILPNELTMASVLKAC 424

Query: 344 TRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWT 403
           +  +    G  +H   +K GL  +V+IG+AL  MY+KCG++   + +F  M  RD +SW 
Sbjct: 425 SNLAAFDQGRQIHARTIKYGLGLEVTIGSALSTMYAKCGNLEEGNIVFRRMPERDIISWN 484

Query: 404 TLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKE 463
            +ISG   +GYG+EAL+LF EM++   +PD +T + +LSAC+H GLV      F  +  E
Sbjct: 485 AMISGLSQNGYGKEALELFEEMRQQDTKPDDVTFVNVLSACSHMGLVDSGWLYFRMMFDE 544

Query: 464 KKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEM 523
             +   +EHYAC VD+L ++GK+ +A + + +  +     +   L+ ACR +   E+   
Sbjct: 545 FGLLPKVEHYACMVDVLSRAGKLYEAKEFIESTTIDHGLCLWRILLGACRNYRNYELGAY 604

Query: 524 LAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
              +L+E   + ++ Y LLS + +  G     E V  +M+ +G+SK  G S IE
Sbjct: 605 AGEKLMELGSQESSAYVLLSGIYTALGRPEDVERVRSMMKVRGVSKEPGCSWIE 658



 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 171/552 (30%), Positives = 275/552 (49%), Gaps = 34/552 (6%)

Query: 18  LHPSGLYSNTAILPSVIKACAYAQTHQ---HFGLQLHCTALKSGSDADPV-ISNSLISMY 73
           LHP  L S  +++           THQ     G  LH   +K  S +  + ++NSLI+ Y
Sbjct: 3   LHPQNLSSFNSLVQF---------THQKSLQKGRALHAQIIKLASSSSCIYLANSLINFY 53

Query: 74  AKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRS--LEMFREMYLCGFVLKAEL 131
           AK      A  +FD +  +D ISWN +IN ++Q G    S  +E+F+ M     +  A  
Sbjct: 54  AKCCHLPKAKLVFDRIHNKDVISWNCLINGYSQQGPTGSSFVMELFQRMRADNILPNAHT 113

Query: 132 LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM 191
            +GI +  S +  +  G+Q HA+ I    F   VFV ++LL++Y K      A  VF++M
Sbjct: 114 FSGIFTAASNLSSIFFGQQAHAVAIKMACF-YDVFVGSSLLNMYCKAGLLFEAREVFDRM 172

Query: 192 VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGK 251
             RNEV+W  MISG    +      ++F  M+RE         T VL A A    + +GK
Sbjct: 173 PERNEVTWATMISGYAIQRLAGEAFEVFELMRREEEDVNEFAFTSVLSALAVPEFVDSGK 232

Query: 252 AIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQS 311
            IH  A   G      +  AL+ MY +C  +L  +  +FE +  K+ + WS++I GY+QS
Sbjct: 233 QIHCLAVKTGLLVFLSILNALVTMYAKCG-SLDDSLQVFEMSNDKNSITWSAMITGYAQS 291

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
           GD  +A+KLFSRM    I P+  TL+ +L++C+    +  G  VH Y++K G    + I 
Sbjct: 292 GDSHKALKLFSRMHFAGINPSEFTLVGVLNACSDACAVEEGKQVHNYLLKLGFESQLYIM 351

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
            AL++MY+K G    + + FN +   D V WT++I+GY  +G  E+AL L+  MQ  G+ 
Sbjct: 352 TALVDMYAKSGVTEDARKGFNYLQQPDLVLWTSMIAGYVQNGENEDALSLYCRMQMEGIL 411

Query: 432 PDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACK 491
           P+ +T+ ++L AC++     +   +    +K   + L +   +    +  K G +E+   
Sbjct: 412 PNELTMASVLKACSNLAAFDQGRQIHARTIK-YGLGLEVTIGSALSTMYAKCGNLEEGNI 470

Query: 492 VVSTMPMKPSTRILS--SLVSACRIHG----RLEVAEMLAHQLIEAEPENAANYTLLSMV 545
           V   MP +    I+S  +++S    +G     LE+ E +  Q  + +P++     +LS  
Sbjct: 471 VFRRMPERD---IISWNAMISGLSQNGYGKEALELFEEMRQQ--DTKPDDVTFVNVLS-A 524

Query: 546 CSESG----NWL 553
           CS  G     WL
Sbjct: 525 CSHMGLVDSGWL 536


>gi|449443954|ref|XP_004139740.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g09040, mitochondrial-like [Cucumis sativus]
          Length = 1441

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 183/548 (33%), Positives = 302/548 (55%), Gaps = 5/548 (0%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPY 91
           S+  ACA +  + +FG QLH   +K+   ++  ++N+L+ MYAK    + A + F+ M  
Sbjct: 415 SIFSACA-SLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEARKQFELMKI 473

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQI 151
            D +SWN+II  + Q  +   +  MFR M   G +     LA I+S C+ + EL+ G+Q 
Sbjct: 474 HDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQC 533

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQN 211
           H L++  G  + S    ++L+D+Y KC   L A  VF  M  RN VS  A+I+G     +
Sbjct: 534 HCLLVKVG-LDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPSRNVVSVNALIAG-YTMGH 591

Query: 212 YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGF-DFDHHLSA 270
            +  I LF+ +Q  G+KPT VT   +L  C     L  G+ IHG     GF      +  
Sbjct: 592 LEEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCV 651

Query: 271 ALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE 330
           +L+ +Y      +    +  E    K +V+W+++I GY+Q     +A++ +  MR + I 
Sbjct: 652 SLLCLYMNSQRFVDSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNIL 711

Query: 331 PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQI 390
           P+     ++L +C   S L +G  +H  I   G N D    ++L++MY+KCG +  S Q+
Sbjct: 712 PDQAAFASVLRACAGMSSLQNGQEIHSLIFHTGFNMDEVTCSSLIDMYAKCGDVKGSLQV 771

Query: 391 FNEMAARD-FVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL 449
           F EM  R+  +SW ++I G   +GY EEAL++F +M++  + PD +T L +LSAC+HAG 
Sbjct: 772 FREMPRRNNVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSACSHAGR 831

Query: 450 VKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLV 509
           V E   +F+ ++   K+   ++H  C VD+LG+ G + +A + ++ +  K    + S+L+
Sbjct: 832 VSEGRKVFDLMVNNYKLLPRVDHLGCMVDILGRWGFLNEAEEFINKLGCKADPMLWSTLL 891

Query: 510 SACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSK 569
            ACR HG     +  A +L+E +P+++++Y LLS + +ES NW GA  + R M+ KG+ K
Sbjct: 892 GACRKHGDEVRGKRAADKLMELKPQSSSSYVLLSSIYAESENWSGAVSLRREMKLKGVKK 951

Query: 570 SYGFSRIE 577
             G+S IE
Sbjct: 952 LPGYSWIE 959



 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 159/572 (27%), Positives = 280/572 (48%), Gaps = 19/572 (3%)

Query: 1   MVSKH----FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALK 56
           M+S H    F E+ +  +  EL  +GL +  + L SV+ A A + +  ++G  +H  A K
Sbjct: 280 MISGHAKRGFAEEAISFF-LELKKTGLKATRSSLGSVLSAIA-SLSMLNYGSMVHAQATK 337

Query: 57  SGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEM 116
            G D +  + ++L++MYAK SK ++A Q+F+ +  R+ + WN+++  F QNG     +E 
Sbjct: 338 EGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEF 397

Query: 117 FREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYS 176
           F  M   G          I S C+ +  L  G Q+H  V++   F  ++FV+ AL+D+Y+
Sbjct: 398 FSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHT-VMIKNKFASNLFVANALVDMYA 456

Query: 177 KCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTI 236
           K      A + FE M I + VSW A+I G +  +  D    +FR M   GV P  V+L  
Sbjct: 457 KSGALKEARKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLAS 516

Query: 237 VLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK 296
           ++ ACA +++L+ G+  H      G D      ++L+ MY +C   L  AR +F     +
Sbjct: 517 IVSACANVQELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVL-AARDVFYSMPSR 575

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVH 356
           +VV  +++I GY+  G L EA+ LF  +++  ++P  VT   +L  C     L+ G  +H
Sbjct: 576 NVVSVNALIAGYTM-GHLEEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIH 634

Query: 357 CYIMKAG-LNFDVSIGNALMNMYSKCGSITSSHQIFNEMA-ARDFVSWTTLISGYGFHGY 414
             +MK G L+    +  +L+ +Y        S  +F+E+   +  V WT LISGY    +
Sbjct: 635 GQVMKWGFLSSSEMVCVSLLCLYMNSQRFVDSETLFSELQYPKGLVVWTALISGYAQQNH 694

Query: 415 GEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYA 474
            E+ALQ +  M+   + PD     ++L AC     ++  + + + +         ++   
Sbjct: 695 HEKALQFYQHMRSDNILPDQAAFASVLRACAGMSSLQNGQEIHSLIF---HTGFNMDEVT 751

Query: 475 C--YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE 532
           C   +D+  K G ++ + +V   MP + +    +S++     +G  E A  +  Q+ +  
Sbjct: 752 CSSLIDMYAKCGDVKGSLQVFREMPRRNNVISWNSMIVGLAKNGYAEEALEIFKQMEQQS 811

Query: 533 --PENAANYTLLSMVCSESGNWLGAEEVWRVM 562
             P+      +LS  CS +G      +V+ +M
Sbjct: 812 IIPDEVTFLGVLS-ACSHAGRVSEGRKVFDLM 842



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 124/407 (30%), Positives = 208/407 (51%), Gaps = 3/407 (0%)

Query: 56  KSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLE 115
           + G   D +   ++++ Y    +   A +LF ++P  + ++WN +I+   + GF   ++ 
Sbjct: 236 RVGHAPDQITLVTVVNAYVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAIS 295

Query: 116 MFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLY 175
            F E+   G       L  ++S  + +  L  G  +HA    +G  + +V+V +AL+++Y
Sbjct: 296 FFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQATKEG-LDDNVYVGSALVNMY 354

Query: 176 SKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLT 235
           +KC     A +VF  +  RN V W AM+ G   +      ++ F  M+R G +P   T T
Sbjct: 355 AKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFT 414

Query: 236 IVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV 295
            +  ACA L  L  G  +H       F  +  ++ AL+ MY + + AL  AR  FE  K+
Sbjct: 415 SIFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAK-SGALKEARKQFELMKI 473

Query: 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV 355
            D V W++II GY Q     EA  +F RM    + P+ V+L +I+S+C     L  G   
Sbjct: 474 HDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQC 533

Query: 356 HCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYG 415
           HC ++K GL+     G++L++MY KCG + ++  +F  M +R+ VS   LI+GY   G+ 
Sbjct: 534 HCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPSRNVVSVNALIAGYTM-GHL 592

Query: 416 EEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462
           EEA+ LF E+Q  G++P  +T   +L  C+ A ++     +   VMK
Sbjct: 593 EEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMK 639



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 129/491 (26%), Positives = 230/491 (46%), Gaps = 52/491 (10%)

Query: 13  LYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISM 72
           ++  E+ P     N      V+ AC+  Q   +FG Q+HC   K+G          LI M
Sbjct: 133 MWNHEVRP-----NEFTFAMVLSACSGLQD-VNFGRQVHCGVFKTGFGFRSFCQGGLIDM 186

Query: 73  YAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELL 132
           YAK      A  +FD     DT+SW ++I  + ++GF + ++++F  M   G       L
Sbjct: 187 YAKCRYLRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPDQITL 246

Query: 133 AGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV 192
             +++    +G L   R                                    ++F Q+ 
Sbjct: 247 VTVVNAYVALGRLADAR------------------------------------KLFTQIP 270

Query: 193 IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKA 252
             N V+W  MISG       +  I  F  +++ G+K TR +L  VL A A L  L  G  
Sbjct: 271 NPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSM 330

Query: 253 IHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSG 312
           +H  A   G D + ++ +AL++MY +C++ +  A+ +F     +++V+W++++ G++Q+G
Sbjct: 331 VHAQATKEGLDDNVYVGSALVNMYAKCSK-MDAAKQVFNSLGERNIVLWNAMLGGFAQNG 389

Query: 313 DLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN 372
              E M+ FS M+    +P+  T  +I S+C    +L+ G  +H  ++K     ++ + N
Sbjct: 390 LAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNKFASNLFVAN 449

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
           AL++MY+K G++  + + F  M   D VSW  +I GY    Y +EA  +F  M  +GV P
Sbjct: 450 ALVDMYAKSGALKEARKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLP 509

Query: 433 DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC----YVDLLGKSGKIED 488
           D +++ +I+SAC +   +K  +     ++K     + ++   C     +D+  K G +  
Sbjct: 510 DEVSLASIVSACANVQELKRGQQCHCLLVK-----VGLDTSTCAGSSLIDMYVKCGVVLA 564

Query: 489 ACKVVSTMPMK 499
           A  V  +MP +
Sbjct: 565 ARDVFYSMPSR 575



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 119/447 (26%), Positives = 211/447 (47%), Gaps = 38/447 (8%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           +H  +LK G     ++ N ++ +Y K    + A + F  +  +D  +WNS+++ +  +G 
Sbjct: 63  IHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGL 122

Query: 110 YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVST 169
           +   ++ F  M+           A ++S CS + ++  GRQ+H  V   G F    F   
Sbjct: 123 FATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTG-FGFRSFCQG 181

Query: 170 ALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKP 229
            L+D+Y+KC +   A  VF+  +  + VSWTA+I+G +        + +F  MQR G  P
Sbjct: 182 GLIDMYAKCRYLRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAP 241

Query: 230 TRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARII 289
            ++TL  V+ A   L  L +                                    AR +
Sbjct: 242 DQITLVTVVNAYVALGRLAD------------------------------------ARKL 265

Query: 290 FERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFL 349
           F +    +VV W+ +I G+++ G   EA+  F  ++   ++    +L ++LS+    S L
Sbjct: 266 FTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSML 325

Query: 350 SHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGY 409
           ++G  VH    K GL+ +V +G+AL+NMY+KC  + ++ Q+FN +  R+ V W  ++ G+
Sbjct: 326 NYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGF 385

Query: 410 GFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA 469
             +G  +E ++ F  M+  G +PD  T  +I SAC     +     L + VM + K A  
Sbjct: 386 AQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQL-HTVMIKNKFASN 444

Query: 470 IEHYACYVDLLGKSGKIEDACKVVSTM 496
           +      VD+  KSG +++A K    M
Sbjct: 445 LFVANALVDMYAKSGALKEARKQFELM 471



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 110/227 (48%), Gaps = 1/227 (0%)

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
           L+ L   K IH  +   G      L   ++ +Y +C   +  A+  F R + KDV  W+S
Sbjct: 54  LQALSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGN-VDFAQKAFSRLEKKDVFAWNS 112

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           ++  Y   G  +  ++ F  M    + PN  T   +LS+C+    ++ G  VHC + K G
Sbjct: 113 VLSMYLDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTG 172

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
             F       L++MY+KC  +  +  +F+     D VSWT LI+GY   G+  EA+++F 
Sbjct: 173 FGFRSFCQGGLIDMYAKCRYLRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFD 232

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAI 470
            MQ  G  PD IT++ +++A    G + +A  LF  +     +A  +
Sbjct: 233 RMQRVGHAPDQITLVTVVNAYVALGRLADARKLFTQIPNPNVVAWNV 279


>gi|356536685|ref|XP_003536866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Glycine max]
          Length = 723

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 181/597 (30%), Positives = 312/597 (52%), Gaps = 51/597 (8%)

Query: 18  LHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFS 77
           LHP G         S++ AC + ++    G QLH   +  G D +P++ + L++ Y   +
Sbjct: 81  LHPIG---------SLLLACTHFKSLSQ-GKQLHAQVISLGLDQNPILVSRLVNFYTNVN 130

Query: 78  KPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS 137
               A  + +     D + WN +I+ + +NGF+V +L +++ M              ++ 
Sbjct: 131 LLVDAQFVTESSNTLDPLHWNLLISAYVRNGFFVEALCVYKNMLNKKIEPDEYTYPSVLK 190

Query: 138 LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197
            C +  +   G ++H   I   S E S+FV  AL+ +Y +     IA  +F+ M  R+ V
Sbjct: 191 ACGESLDFNSGLEVHR-SIEASSMEWSLFVHNALVSMYGRFGKLEIARHLFDNMPRRDSV 249

Query: 198 SWTAMIS-----------------------------------GCIDSQNYDTGIDLFRAM 222
           SW  +IS                                   GC+ S N+   + L   M
Sbjct: 250 SWNTIISCYASRGIWKEAFQLFGSMQEEGVEMNVIIWNTIAGGCLHSGNFRGALQLISQM 309

Query: 223 QREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEA 282
            R  +    + + + L AC+ +  ++ GK IHG+A    FD   ++  AL+ MY  C + 
Sbjct: 310 -RTSIHLDAIAMVVGLNACSHIGAIKLGKEIHGHAVRTCFDVFDNVKNALITMYSRCRDL 368

Query: 283 LHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSS 342
            H A I+F RT+ K ++ W++++ GY+      E   LF  M  E +EPN VT+ ++L  
Sbjct: 369 GH-AFILFHRTEEKGLITWNAMLSGYAHMDRYEEVTFLFREMLQEGMEPNYVTIASVLPL 427

Query: 343 CTRQSFLSHGLGVHCYIMKAGLNFD--VSIGNALMNMYSKCGSITSSHQIFNEMAARDFV 400
           C R + L HG   HCYIMK    F+  + + NAL++MYS+ G +  + ++F+ +  RD V
Sbjct: 428 CARIANLQHGKEFHCYIMKHK-QFEEYLLLWNALVDMYSRSGRVLEARKVFDSLTKRDEV 486

Query: 401 SWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNV 460
           ++T++I GYG  G GE  L+LF EM +  ++PD +T++A+L+AC+H+GLV + + LF  +
Sbjct: 487 TYTSMILGYGMKGEGETTLKLFEEMCKLEIKPDHVTMVAVLTACSHSGLVAQGQVLFKRM 546

Query: 461 MKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEV 520
           +    I   +EHYAC  DL G++G +  A + ++ MP KP++ + ++L+ ACRIHG  E+
Sbjct: 547 IDVHGIVPRLEHYACMADLFGRAGLLNKAKEFITGMPYKPTSAMWATLLGACRIHGNTEM 606

Query: 521 AEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            E  A +L+E +P+++  Y L++ + + +G+W    EV   MR  G+ K+ G + ++
Sbjct: 607 GEWAAGKLLEMKPDHSGYYVLIANMYAAAGSWRKLAEVRTYMRNLGVRKAPGCAWVD 663



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 130/466 (27%), Positives = 220/466 (47%), Gaps = 46/466 (9%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V   F+ + L +YK  L+   +  +    PSV+KAC  +      GL++H +   S  + 
Sbjct: 158 VRNGFFVEALCVYKNMLNKK-IEPDEYTYPSVLKACGESLDFNS-GLEVHRSIEASSMEW 215

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
              + N+L+SMY +F K E A  LFD MP RD++SWN+II+C+   G +  + ++F  M 
Sbjct: 216 SLFVHNALVSMYGRFGKLEIARHLFDNMPRRDSVSWNTIISCYASRGIWKEAFQLFGSMQ 275

Query: 122 -------------LCGFVLKAELLAGIISL---------------------CSQIGELEL 147
                        + G  L +    G + L                     CS IG ++L
Sbjct: 276 EEGVEMNVIIWNTIAGGCLHSGNFRGALQLISQMRTSIHLDAIAMVVGLNACSHIGAIKL 335

Query: 148 GRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCI 207
           G++IH    V   F++   V  AL+ +YS+C     A  +F +   +  ++W AM+SG  
Sbjct: 336 GKEIHGHA-VRTCFDVFDNVKNALITMYSRCRDLGHAFILFHRTEEKGLITWNAMLSGYA 394

Query: 208 DSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
               Y+    LFR M +EG++P  VT+  VL  CA + +L++GK  H Y       F+ +
Sbjct: 395 HMDRYEEVTFLFREMLQEGMEPNYVTIASVLPLCARIANLQHGKEFHCYIMKHK-QFEEY 453

Query: 268 --LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR 325
             L  AL+ MY      L  AR +F+    +D V ++S+I GY   G+    +KLF  M 
Sbjct: 454 LLLWNALVDMYSRSGRVLE-ARKVFDSLTKRDEVTYTSMILGYGMKGEGETTLKLFEEMC 512

Query: 326 LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA-GLNFDVSIGNALMNMYSKCGSI 384
              I+P+ VT++A+L++C+    ++ G  +   ++   G+   +     + +++ + G +
Sbjct: 513 KLEIKPDHVTMVAVLTACSHSGLVAQGQVLFKRMIDVHGIVPRLEHYACMADLFGRAGLL 572

Query: 385 TSSHQIFNEMAARDFVS-WTTLISGYGFHG---YGEEALQLFLEMQ 426
             + +    M  +   + W TL+     HG    GE A    LEM+
Sbjct: 573 NKAKEFITGMPYKPTSAMWATLLGACRIHGNTEMGEWAAGKLLEMK 618



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 120/264 (45%), Gaps = 9/264 (3%)

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLL----AILSSCTRQSFLSHGLGVHCYIM 360
           ++ +   G L+ A K F   +++    +S  LL    ++L +CT    LS G  +H  ++
Sbjct: 51  LKDFVTHGHLTNAFKTF--FQIQHHAASSHLLLHPIGSLLLACTHFKSLSQGKQLHAQVI 108

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
             GL+ +  + + L+N Y+    +  +  +       D + W  LIS Y  +G+  EAL 
Sbjct: 109 SLGLDQNPILVSRLVNFYTNVNLLVDAQFVTESSNTLDPLHWNLLISAYVRNGFFVEALC 168

Query: 421 LFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLL 480
           ++  M    +EPD  T  ++L AC  + L   +    +  ++   +  ++  +   V + 
Sbjct: 169 VYKNMLNKKIEPDEYTYPSVLKACGES-LDFNSGLEVHRSIEASSMEWSLFVHNALVSMY 227

Query: 481 GKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPE-NAANY 539
           G+ GK+E A  +   MP + S    ++++S     G  + A  L   + E   E N   +
Sbjct: 228 GRFGKLEIARHLFDNMPRRDSVS-WNTIISCYASRGIWKEAFQLFGSMQEEGVEMNVIIW 286

Query: 540 TLLSMVCSESGNWLGAEEVWRVMR 563
             ++  C  SGN+ GA ++   MR
Sbjct: 287 NTIAGGCLHSGNFRGALQLISQMR 310


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 165/529 (31%), Positives = 288/529 (54%), Gaps = 2/529 (0%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
            +H   L+   D D  + N ++     F     +  +F ++   +   WN++I       
Sbjct: 34  HIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKD 93

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
            +  ++ ++  M   GF+     +  ++  C++  ++ LG +IH+L++  G ++  VFV 
Sbjct: 94  CFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAG-YDHDVFVK 152

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
           T+LL LY KC ++  AL+VF+ +  +N VSWTA+I+G I S ++   I  F+ +   G+K
Sbjct: 153 TSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLK 212

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
           P   +L  VL ACA L D  +G+ I  Y    G   +  ++ +L+ MY +C   L  A +
Sbjct: 213 PDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGN-LERANL 271

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
           IF     KD+V WS++I+GY+ +G   +A+ LF +M+ E ++P+  T++ +LS+C     
Sbjct: 272 IFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGA 331

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
           L  G+     + +     +  +G AL++MYSKCGS+T + +IF  M  +D V W  ++ G
Sbjct: 332 LDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVG 391

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468
              +G+ +    LF  +++ G+ PD  T + +L  C H G V E    FNN+ +   +  
Sbjct: 392 LSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTP 451

Query: 469 AIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
           +IEHY C VDLLG++G + +A ++++ MPMKP+  +  +L+  C++H    +AE +  +L
Sbjct: 452 SIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKL 511

Query: 529 IEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           IE EP N+ NY  LS + S +  W  AE++   M+ + + K    S IE
Sbjct: 512 IELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIE 560



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 138/472 (29%), Positives = 233/472 (49%), Gaps = 16/472 (3%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           +VSK  ++  +HLY   +   G   N   +P V+KACA  +     GL++H   +K+G D
Sbjct: 89  LVSKDCFDDAIHLYGS-MRGGGFLPNNFTIPFVLKACA-RKLDVRLGLKIHSLLVKAGYD 146

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
            D  +  SL+S+Y K    + A ++FD++P ++ +SW +II  +  +G +  ++  F+++
Sbjct: 147 HDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKL 206

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
              G    +  L  +++ C+++G+   G  I    I D     +VFV+T+LLD+Y KC +
Sbjct: 207 LEMGLKPDSFSLVKVLAACARLGDCTSGEWIDR-YISDSGMGRNVFVATSLLDMYVKCGN 265

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
              A  +F  M  ++ VSW+ MI G   +      +DLF  MQ E +KP   T+  VL A
Sbjct: 266 LERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSA 325

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
           CA L  L  G           F  +  L  AL+ MY +C  ++  A  IF   K KD V+
Sbjct: 326 CATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCG-SVTQAWEIFTAMKKKDRVV 384

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           W++++ G S +G       LFS +    I P+  T + +L  CT   F++ G       M
Sbjct: 385 WNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNN-M 443

Query: 361 KAGLNFDVSIGN--ALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFHGYGEE 417
           K   +   SI +   ++++  + G +  +HQ+ N M  + + V W  L+ G   H     
Sbjct: 444 KRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHL 503

Query: 418 ALQLFLEMQESGVEP---DAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
           A Q+  ++ E  +EP        L+ + + NH    +EAE +  + MKE++I
Sbjct: 504 AEQVLKKLIE--LEPWNSGNYVQLSNIYSGNHRW--EEAEKI-RSTMKEQQI 550


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  308 bits (789), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 185/591 (31%), Positives = 315/591 (53%), Gaps = 35/591 (5%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGS-DADPVIS-NSLISMYA 74
           E HP   ++    L SV+ AC++       G + H  ALK+G  D D   + N+L+SMYA
Sbjct: 156 EGHPLSSFT----LVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYA 211

Query: 75  KFSKPESAYQLFDEMPYRDT-----ISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKA 129
           +    + A  LF  +   D+     ++WN++++   Q+G    ++E+  +M   G     
Sbjct: 212 RLGLVDDAQMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDG 271

Query: 130 ELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
              A  +  CSQ+  L LGR++HA V+ D     + FV++AL+D+Y+      +A RVF+
Sbjct: 272 ITFASALPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFD 331

Query: 190 QMVI--RNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE-GVKPTRVTLTIVLLACAELRD 246
            +    R    W AM+ G   +   +  ++LF  M+ E GV P+  T+  VL ACA    
Sbjct: 332 MVPGGHRQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSET 391

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
               +A+HGY    G   +  +  ALM +Y    + +  AR IF   + +DVV W+++I 
Sbjct: 392 FAGKEAVHGYVLKRGMADNPFVQNALMDLYARLGD-MEAARWIFAAIEPRDVVSWNTLIT 450

Query: 307 GYSQSGDLSEAMKLFSRMRL------------------ERIEPNSVTLLAILSSCTRQSF 348
           G    G + +A +L   M+                   E + PN+VTL+ +L  C   + 
Sbjct: 451 GCVVQGHIHDAFQLVREMQQQGRFTDATTEDGIAGTDEEPVVPNNVTLMTLLPGCAMLAA 510

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
            + G  +H Y M+  L+ D+++G+AL++MY+KCG +  S  +F+ +  R+ ++W  LI  
Sbjct: 511 PAKGKEIHGYAMRHALDSDIAVGSALVDMYAKCGCLALSRAVFDRLPKRNVITWNVLIMA 570

Query: 409 YGFHGYGEEALQLFLEMQESG-VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIA 467
           YG HG G+EA+ LF  M  S   +P+ +T +A L+AC+H+G+V     LF+++ +   + 
Sbjct: 571 YGMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSGMVDRGMELFHSMKRNHGVQ 630

Query: 468 LAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKPSTRILSSLVSACRIHGRLEVAEMLAH 526
              + +AC VD+LG++G++++A  ++++M P +      SS + ACR+H  + + E+ A 
Sbjct: 631 PTPDLHACAVDILGRAGRLDEAYSIITSMEPGEQQVSAWSSFLGACRLHRNVPLGEIAAE 690

Query: 527 QLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +L + EP+ A++Y LL  + S +G W  + EV   MR +G+SK  G S IE
Sbjct: 691 RLFQLEPDEASHYVLLCNIYSAAGLWEKSSEVRNRMRQRGVSKEPGCSWIE 741



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 142/523 (27%), Positives = 253/523 (48%), Gaps = 42/523 (8%)

Query: 63  PVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL 122
           P ++N+L++ YA+     +A  LF+ MP RD +++NS+I        ++ +L+  R+M L
Sbjct: 96  PAVANALLTAYARCGDLTAALALFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLL 155

Query: 123 CGFVLKAELLAGIISLCSQIGE-LELGRQIHALVIVDGSFELS-VFVSTALLDLYSKCHH 180
            G  L +  L  ++  CS + E L LGR+ HA  + +G  +    F   ALL +Y++   
Sbjct: 156 EGHPLSSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGL 215

Query: 181 WLIALRVFEQMVIRNE-----VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLT 235
              A  +F  +   +      V+W  M+S  + S      I++   M   GV+P  +T  
Sbjct: 216 VDDAQMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFA 275

Query: 236 IVLLACAELRDLRNGKAIHGYAYC-CGFDFDHHLSAALMHMYCECTEALHPARIIFERTK 294
             L AC++L  L  G+ +H Y         +  +++AL+ MY    E +  AR +F+   
Sbjct: 276 SALPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYAS-HERVGVARRVFDMVP 334

Query: 295 V--KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER-IEPNSVTLLAILSSCTRQSFLSH 351
              + + +W++++ GY+Q+G   EA++LF+RM  E  + P+  T+  +L +C R    + 
Sbjct: 335 GGHRQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFAG 394

Query: 352 GLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGF 411
              VH Y++K G+  +  + NALM++Y++ G + ++  IF  +  RD VSW TLI+G   
Sbjct: 395 KEAVHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVV 454

Query: 412 HGYGEEALQLFLEMQESG------------------VEPDAITVLAILSACNHAGLVKEA 453
            G+  +A QL  EMQ+ G                  V P+ +T++ +L  C       + 
Sbjct: 455 QGHIHDAFQLVREMQQQGRFTDATTEDGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPAKG 514

Query: 454 ETLFNNVMK---EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVS 510
           + +    M+   +  IA+     +  VD+  K G +  +  V   +P K +    + L+ 
Sbjct: 515 KEIHGYAMRHALDSDIAVG----SALVDMYAKCGCLALSRAVFDRLP-KRNVITWNVLIM 569

Query: 511 ACRIHGRLEVAEMLAHQLI---EAEPENAANYTLLSMVCSESG 550
           A  +HG  + A  L  +++   EA+P N   +      CS SG
Sbjct: 570 AYGMHGLGDEAIALFDRMVMSNEAKP-NEVTFIAALAACSHSG 611



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 79/189 (41%), Gaps = 41/189 (21%)

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
            F  ++ NAL+  Y++CG +T++  +FN M +RD V++ +LI+          AL    +
Sbjct: 93  GFTPAVANALLTAYARCGDLTAALALFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRD 152

Query: 425 MQESGVEPDAITVLAILSACNH-------------------------------------- 446
           M   G    + T++++L AC+H                                      
Sbjct: 153 MLLEGHPLSSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYAR 212

Query: 447 AGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM---PMKPSTR 503
            GLV +A+ LF +V         +  +   V LL +SG+  +A +V+  M    ++P   
Sbjct: 213 LGLVDDAQMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGI 272

Query: 504 ILSSLVSAC 512
             +S + AC
Sbjct: 273 TFASALPAC 281


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  308 bits (788), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 183/574 (31%), Positives = 304/574 (52%), Gaps = 7/574 (1%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           F+ Q    Y+  +     +S+   L  ++   A  ++ +H   Q+H   + + + A    
Sbjct: 76  FWLQLFTSYQSGVPKFHQFSSVPDLKHLLNNAAKLKSLKH-ATQIHSQLVTTNNHASLAN 134

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDT--ISWNSIINCFTQNGFYVRSLEMFREMYLC 123
            N+L+ +YAK         LF+  P+  T  ++W ++IN  +++    ++L  F  M   
Sbjct: 135 INTLLLLYAKCGSIHHTLLLFNTYPHPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTT 194

Query: 124 GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
           G        + I+  C+    L  G+QIHAL I    F    FV+TALLD+Y+KC   L+
Sbjct: 195 GIYPNHFTFSAILPACAHAALLSEGQQIHAL-IHKHCFLNDPFVATALLDMYAKCGSMLL 253

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
           A  VF++M  RN VSW +MI G + ++ Y   I +FR +   G  P +V+++ VL ACA 
Sbjct: 254 AENVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFREVLSLG--PDQVSISSVLSACAG 311

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
           L +L  GK +HG     G     ++  +L+ MYC+C      A  +F     +DVV W+ 
Sbjct: 312 LVELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCG-LFEDATKLFCGGGDRDVVTWNV 370

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           +I G  +  +  +A   F  M  E +EP+  +  ++  +    + L+ G  +H +++K G
Sbjct: 371 MIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTMIHSHVLKTG 430

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
              +  I ++L+ MY KCGS+  ++Q+F E    + V WT +I+ +  HG   EA++LF 
Sbjct: 431 HVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFE 490

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS 483
           EM   GV P+ IT +++LSAC+H G + +    FN++     I   +EHYAC VDLLG+ 
Sbjct: 491 EMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANVHNIKPGLEHYACMVDLLGRV 550

Query: 484 GKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLS 543
           G++E+AC+ + +MP +P + +  +L+ AC  H  +E+   +A +L + EP+N  NY LLS
Sbjct: 551 GRLEEACRFIESMPFEPDSLVWGALLGACGKHANVEMGREVAERLFKLEPDNPGNYMLLS 610

Query: 544 MVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +    G    A+EV R+M   G+ K  G S I+
Sbjct: 611 NIYIRHGMLEEADEVRRLMGINGVRKESGCSWID 644


>gi|242096002|ref|XP_002438491.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
 gi|241916714|gb|EER89858.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
          Length = 794

 Score =  308 bits (788), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 189/592 (31%), Positives = 316/592 (53%), Gaps = 37/592 (6%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGS-DADPVIS-NSLISMYA 74
           E HP  L S T  L SV+ AC++       G + H  ALK+G  D D   + N+L+SMYA
Sbjct: 154 EGHP--LTSFT--LVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYA 209

Query: 75  KFSKPESAYQLFD-----EMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKA 129
           +    + A  LF      ++P    ++WN++++   Q+G    ++E+  +M   G     
Sbjct: 210 RLGLVDDAQTLFGSVGATDVPGGGVVTWNTMVSLLVQSGRCGEAIEVLYDMVARGVRPDG 269

Query: 130 ELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
              A  +  CSQ+  L LGR++HA V+ D     + FV++AL+D+Y+  H  + A R+  
Sbjct: 270 VTFASALPACSQLEMLSLGREMHAYVLKDADLAANSFVASALVDMYAS-HERVGAARLVF 328

Query: 190 QMVIRNEVS---WTAMISGCIDSQNYDTGIDLFRAMQRE-GVKPTRVTLTIVLLACAELR 245
            MV   E     W AMI G   +   +  ++LF  M+ E GV P+  T+  VL +CA   
Sbjct: 329 DMVPAGERQLGLWNAMICGYAQAGLDEDALELFARMETEAGVVPSETTIAGVLPSCARSE 388

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
                +A+HGY    G   +  +  ALM +Y    + +  AR IF   + +DVV W+++I
Sbjct: 389 TFAGKEAVHGYVVKRGMADNPFVQNALMDLYARLGD-MDAARWIFATIEPRDVVSWNTLI 447

Query: 306 RGYSQSGDLSEAMKLFSRMRL------------------ERIEPNSVTLLAILSSCTRQS 347
            G    G + +A +L   M+                   E + PN++TL+ +L  C   +
Sbjct: 448 TGCVVQGHIRDAFQLVREMQQQGRFTDAATEDGIAGADEEPVVPNNITLMTLLPGCAMLA 507

Query: 348 FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLIS 407
             + G  +H Y ++  L+ DV++G+AL++MY+KCG +  S  +F+ +  R+ ++W  LI 
Sbjct: 508 APARGKEIHGYAVRHALDSDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNVITWNVLIM 567

Query: 408 GYGFHGYGEEALQLFLEMQESG-VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
            YG HG G+EA+ LF  M  S   +P+ +T +A L+AC+H+G+V     +F ++ +   +
Sbjct: 568 AYGMHGLGDEAIALFDRMVASDEAKPNEVTFIAALAACSHSGMVDRGLEMFRSMKRNHGV 627

Query: 467 ALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKPSTRILSSLVSACRIHGRLEVAEMLA 525
               + +AC VD+LG++G++++A +++S+M P +      SS + ACR+H  + + E+ A
Sbjct: 628 EPTPDLHACAVDILGRAGRLDEAYRIISSMEPGEQQVSAWSSFLGACRLHRNVALGEIAA 687

Query: 526 HQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +L E EP+ A++Y LL  + S +G W  + EV   MR +G+SK  G S IE
Sbjct: 688 ERLFELEPDEASHYVLLCNIYSAAGLWEKSSEVRSRMRQRGVSKEPGCSWIE 739



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 147/536 (27%), Positives = 259/536 (48%), Gaps = 42/536 (7%)

Query: 63  PVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL 122
           P +SN+L++ YA+     +A  LFD MP RD +++NS+I        ++ +L+  R+M L
Sbjct: 94  PAVSNALLTAYARCGDLTAALALFDAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLL 153

Query: 123 CGFVLKAELLAGIISLCSQIGE-LELGRQIHALVIVDGSFELS-VFVSTALLDLYSKCHH 180
            G  L +  L  ++  CS + E L LGR+ HA  + +G  +    F   ALL +Y++   
Sbjct: 154 EGHPLTSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGL 213

Query: 181 WLIALRVFEQMVIRN-----EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLT 235
              A  +F  +   +      V+W  M+S  + S      I++   M   GV+P  VT  
Sbjct: 214 VDDAQTLFGSVGATDVPGGGVVTWNTMVSLLVQSGRCGEAIEVLYDMVARGVRPDGVTFA 273

Query: 236 IVLLACAELRDLRNGKAIHGYAYC-CGFDFDHHLSAALMHMYCECTEALHPARIIFERTK 294
             L AC++L  L  G+ +H Y         +  +++AL+ MY    E +  AR++F+   
Sbjct: 274 SALPACSQLEMLSLGREMHAYVLKDADLAANSFVASALVDMYAS-HERVGAARLVFDMVP 332

Query: 295 V--KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER-IEPNSVTLLAILSSCTRQSFLSH 351
              + + +W+++I GY+Q+G   +A++LF+RM  E  + P+  T+  +L SC R    + 
Sbjct: 333 AGERQLGLWNAMICGYAQAGLDEDALELFARMETEAGVVPSETTIAGVLPSCARSETFAG 392

Query: 352 GLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGF 411
              VH Y++K G+  +  + NALM++Y++ G + ++  IF  +  RD VSW TLI+G   
Sbjct: 393 KEAVHGYVVKRGMADNPFVQNALMDLYARLGDMDAARWIFATIEPRDVVSWNTLITGCVV 452

Query: 412 HGYGEEALQLFLEMQESG------------------VEPDAITVLAILSACNHAGLVKEA 453
            G+  +A QL  EMQ+ G                  V P+ IT++ +L  C         
Sbjct: 453 QGHIRDAFQLVREMQQQGRFTDAATEDGIAGADEEPVVPNNITLMTLLPGCAMLAAPARG 512

Query: 454 ETLFNNVMK---EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVS 510
           + +    ++   +  +A+     +  VD+  K G +  +  V   +P + +    + L+ 
Sbjct: 513 KEIHGYAVRHALDSDVAVG----SALVDMYAKCGCLALSRAVFDRLPRR-NVITWNVLIM 567

Query: 511 ACRIHGRLEVAEMLAHQLI---EAEPENAANYTLLSMVCSESGNWLGAEEVWRVMR 563
           A  +HG  + A  L  +++   EA+P N   +      CS SG      E++R M+
Sbjct: 568 AYGMHGLGDEAIALFDRMVASDEAKP-NEVTFIAALAACSHSGMVDRGLEMFRSMK 622


>gi|225464633|ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
           chloroplastic [Vitis vinifera]
 gi|302143764|emb|CBI22625.3| unnamed protein product [Vitis vinifera]
          Length = 880

 Score =  308 bits (788), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 183/575 (31%), Positives = 310/575 (53%), Gaps = 12/575 (2%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           + Q L LY + +  +G+  N      ++ A ++   +  +G  +H   +    + + V+ 
Sbjct: 198 WSQALQLYHRMIQ-TGVAPNEFTFVKLLAASSFLGLN--YGKLVHAHLMMWRIELNLVLK 254

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
            +L+ MY K    E A ++       D   W +II+ FTQ+  +  ++  F EM   G V
Sbjct: 255 TALVDMYCKCQSIEDAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEMETSGVV 314

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL-IAL 185
                 +GI++ CS I  L+LG+QIH+ V++ G  E  V V  +L+D+Y KC + +  A+
Sbjct: 315 PNNFTYSGILNACSSILALDLGKQIHSRVVMAG-LENDVSVGNSLVDMYMKCSNMIEDAV 373

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
           R F  +   N +SWT++I+G  +    +  I +F AMQ  GV+P   TL+ +L AC  ++
Sbjct: 374 RAFRGIASPNVISWTSLIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLSTILGACGTIK 433

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCE---CTEALHPARIIFERTKVKDVVIWS 302
            L   + +HGY      D D  +  AL+  Y       +A H   ++    K +DV+ ++
Sbjct: 434 SLTQTRKLHGYIIKNNADNDVVVGNALVDAYAGLGMVDDAWHVTSMM----KHRDVITYT 489

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
           S+    +Q+G+   A+ + + M  + +  +  +L + LS+      +  G  +HCY +K+
Sbjct: 490 SLATRINQTGNHEMALNIITHMNKDDVRMDGFSLASFLSAAAGIPIMETGKQLHCYSVKS 549

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
           GL   +S+ N L+++Y KCG I  +H+ F E+   D VSW  LI G   +G+   AL  F
Sbjct: 550 GLGSWISVSNGLVDLYGKCGCIHDAHRSFLEITEPDAVSWNGLIFGLASNGHVSSALSAF 609

Query: 423 LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGK 482
            +M+ +GVEPD IT L +L AC+H GLV      F ++ ++  I   ++HY C VDLLG+
Sbjct: 610 EDMRLAGVEPDQITCLLVLYACSHGGLVDMGLDYFQSMREKHGIRPQLDHYVCLVDLLGR 669

Query: 483 SGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLL 542
           +G++E+A  V+ TMP KP   I  +L+ AC++HG + + E +A Q +E +P + A Y LL
Sbjct: 670 AGRLEEAMNVIETMPFKPDALIYKTLLGACKLHGNIPLGEHMARQGLELDPSDPAFYVLL 729

Query: 543 SMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           + +  +SG     E+  R+MR +G+ K+ G S +E
Sbjct: 730 ANLYDDSGRSELGEKTRRMMRERGVRKNPGQSWME 764



 Score =  241 bits (616), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 149/451 (33%), Positives = 239/451 (52%), Gaps = 5/451 (1%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G+ +H   +K G   D  +SN+L+S+Y K      A QLFDEMP RD  SW  +++ + +
Sbjct: 34  GICIHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAEARQLFDEMPCRDVASWTMLMSAYGK 93

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
            G +  +LE+F  M + G       L+  +  CS + E   G +  ALV   G F+ +  
Sbjct: 94  IGNHEEALELFDSMLISGEYPNEFTLSTALRSCSALREFNHGTRFQALVTKSG-FDSNPV 152

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           + +AL+D YSKC     A RVFE M   + VSWT M+S  +++ ++   + L+  M + G
Sbjct: 153 LGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQTG 212

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           V P   T  + LLA +    L  GK +H +      + +  L  AL+ MYC+C +++  A
Sbjct: 213 VAPNEFTF-VKLLAASSFLGLNYGKLVHAHLMMWRIELNLVLKTALVDMYCKC-QSIEDA 270

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
             + + T   DV +W++II G++QS    EA+  F  M    + PN+ T   IL++C+  
Sbjct: 271 VKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEMETSGVVPNNFTYSGILNACSSI 330

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS-ITSSHQIFNEMAARDFVSWTTL 405
             L  G  +H  ++ AGL  DVS+GN+L++MY KC + I  + + F  +A+ + +SWT+L
Sbjct: 331 LALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISWTSL 390

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           I+G+  HG  EE++++F  MQ  GV P++ T+  IL AC     + +   L   ++K   
Sbjct: 391 IAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLSTILGACGTIKSLTQTRKLHGYIIKNNA 450

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
               +   A  VD     G ++DA  V S M
Sbjct: 451 DNDVVVGNA-LVDAYAGLGMVDDAWHVTSMM 480



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 116/394 (29%), Positives = 197/394 (50%), Gaps = 21/394 (5%)

Query: 131 LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQ 190
           LL  I+S C+    +  G  IH+ +I  G F+  +F+S  LL LY KC     A ++F++
Sbjct: 18  LLKDIVSFCNS-RSVRDGICIHSPIIKMG-FQEDMFLSNNLLSLYGKCFGVAEARQLFDE 75

Query: 191 MVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNG 250
           M  R+  SWT ++S      N++  ++LF +M   G  P   TL+  L +C+ LR+  +G
Sbjct: 76  MPCRDVASWTMLMSAYGKIGNHEEALELFDSMLISGEYPNEFTLSTALRSCSALREFNHG 135

Query: 251 KAIHGYAYCCGFDFDHHLSAALMHMY--CECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
                     GFD +  L +AL+  Y  C CT+    A  +FE     D+V W+ ++  +
Sbjct: 136 TRFQALVTKSGFDSNPVLGSALIDFYSKCGCTQ---EAYRVFEYMNNGDIVSWTMMVSSF 192

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF--LSHGLGVHCYIMKAGLNF 366
            ++G  S+A++L+ RM    + PN  T + +L++    SF  L++G  VH ++M   +  
Sbjct: 193 VEAGSWSQALQLYHRMIQTGVAPNEFTFVKLLAA---SSFLGLNYGKLVHAHLMMWRIEL 249

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           ++ +  AL++MY KC SI  + ++       D   WT +ISG+       EA+  F EM+
Sbjct: 250 NLVLKTALVDMYCKCQSIEDAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEME 309

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLLGK- 482
            SGV P+  T   IL+AC+    +   + + + V+    E  +++        VD+  K 
Sbjct: 310 TSGVVPNNFTYSGILNACSSILALDLGKQIHSRVVMAGLENDVSVG----NSLVDMYMKC 365

Query: 483 SGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG 516
           S  IEDA +    +   P+    +SL++    HG
Sbjct: 366 SNMIEDAVRAFRGIA-SPNVISWTSLIAGFSEHG 398



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 137/266 (51%), Gaps = 5/266 (1%)

Query: 229 PTRVTLTIV--LLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           P+++  +++  +++    R +R+G  IH      GF  D  LS  L+ +Y +C   +  A
Sbjct: 11  PSKIEYSLLKDIVSFCNSRSVRDGICIHSPIIKMGFQEDMFLSNNLLSLYGKCF-GVAEA 69

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
           R +F+    +DV  W+ ++  Y + G+  EA++LF  M +    PN  TL   L SC+  
Sbjct: 70  RQLFDEMPCRDVASWTMLMSAYGKIGNHEEALELFDSMLISGEYPNEFTLSTALRSCSAL 129

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
              +HG      + K+G + +  +G+AL++ YSKCG    ++++F  M   D VSWT ++
Sbjct: 130 REFNHGTRFQALVTKSGFDSNPVLGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMV 189

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
           S +   G   +ALQL+  M ++GV P+  T + +L+A +  GL      L +  +   +I
Sbjct: 190 SSFVEAGSWSQALQLYHRMIQTGVAPNEFTFVKLLAASSFLGL--NYGKLVHAHLMMWRI 247

Query: 467 ALAIEHYACYVDLLGKSGKIEDACKV 492
            L +      VD+  K   IEDA KV
Sbjct: 248 ELNLVLKTALVDMYCKCQSIEDAVKV 273


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  308 bits (788), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 165/529 (31%), Positives = 288/529 (54%), Gaps = 2/529 (0%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
            +H   L+   D D  + N ++     F     +  +F ++   +   WN++I       
Sbjct: 34  HIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKD 93

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
            +  ++ ++  M   GF+     +  ++  C++  ++ LG +IH+L++  G ++  VFV 
Sbjct: 94  CFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAG-YDHDVFVK 152

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
           T+LL LY KC ++  AL+VF+ +  +N VSWTA+I+G I S ++   I  F+ +   G+K
Sbjct: 153 TSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLK 212

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
           P   +L  VL ACA L D  +G+ I  Y    G   +  ++ +L+ MY +C   L  A +
Sbjct: 213 PDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGN-LERANL 271

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
           IF     KD+V WS++I+GY+ +G   +A+ LF +M+ E ++P+  T++ +LS+C     
Sbjct: 272 IFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGA 331

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
           L  G+     + +     +  +G AL++MYSKCGS+T + +IF  M  +D V W  ++ G
Sbjct: 332 LDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVG 391

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468
              +G+ +    LF  +++ G+ PD  T + +L  C H G V E    FNN+ +   +  
Sbjct: 392 LSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTP 451

Query: 469 AIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
           +IEHY C VDLLG++G + +A ++++ MPMKP+  +  +L+  C++H    +AE +  +L
Sbjct: 452 SIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKL 511

Query: 529 IEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           IE EP N+ NY  LS + S +  W  AE++   M+ + + K    S IE
Sbjct: 512 IELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIE 560



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 138/472 (29%), Positives = 233/472 (49%), Gaps = 16/472 (3%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           +VSK  ++  +HLY   +   G   N   +P V+KACA  +     GL++H   +K+G D
Sbjct: 89  LVSKDCFDDAIHLYGS-MRGGGFLPNNFTIPFVLKACA-RKLDVRLGLKIHSLLVKAGYD 146

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
            D  +  SL+S+Y K    + A ++FD++P ++ +SW +II  +  +G +  ++  F+++
Sbjct: 147 HDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKL 206

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
              G    +  L  +++ C+++G+   G  I    I D     +VFV+T+LLD+Y KC +
Sbjct: 207 LEMGLKPDSFSLVKVLAACARLGDCTSGEWIDR-YISDSGMGRNVFVATSLLDMYVKCGN 265

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
              A  +F  M  ++ VSW+ MI G   +      +DLF  MQ E +KP   T+  VL A
Sbjct: 266 LERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSA 325

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
           CA L  L  G           F  +  L  AL+ MY +C  ++  A  IF   K KD V+
Sbjct: 326 CATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCG-SVTQAWEIFTAMKRKDRVV 384

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           W++++ G S +G       LFS +    I P+  T + +L  CT   F++ G       M
Sbjct: 385 WNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNN-M 443

Query: 361 KAGLNFDVSIGN--ALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFHGYGEE 417
           K   +   SI +   ++++  + G +  +HQ+ N M  + + V W  L+ G   H     
Sbjct: 444 KRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHL 503

Query: 418 ALQLFLEMQESGVEP---DAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
           A Q+  ++ E  +EP        L+ + + NH    +EAE +  + MKE++I
Sbjct: 504 AEQVLKKLIE--LEPWNSGNYVQLSNIYSGNHRW--EEAEKI-RSTMKEQQI 550


>gi|15225505|ref|NP_181492.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75099847|sp|O80647.1|PP195_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g39620
 gi|3355489|gb|AAC27851.1| hypothetical protein [Arabidopsis thaliana]
 gi|330254604|gb|AEC09698.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 836

 Score =  308 bits (788), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 164/495 (33%), Positives = 288/495 (58%), Gaps = 3/495 (0%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G+ +H  A++ G   D  ++ SL+SMY+K  + E A QLF  +  RD +SW+++I  + Q
Sbjct: 319 GIAIHDYAVQQGLIGDVSVATSLMSMYSKCGELEIAEQLFINIEDRDVVSWSAMIASYEQ 378

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
            G +  ++ +FR+M        A  L  ++  C+ +    LG+ IH   I     E  + 
Sbjct: 379 AGQHDEAISLFRDMMRIHIKPNAVTLTSVLQGCAGVAASRLGKSIHCYAI-KADIESELE 437

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
            +TA++ +Y+KC  +  AL+ FE++ I++ V++ A+  G     + +   D+++ M+  G
Sbjct: 438 TATAVISMYAKCGRFSPALKAFERLPIKDAVAFNALAQGYTQIGDANKAFDVYKNMKLHG 497

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           V P   T+  +L  CA   D   G  ++G     GFD + H++ AL++M+ +C +AL  A
Sbjct: 498 VCPDSRTMVGMLQTCAFCSDYARGSCVYGQIIKHGFDSECHVAHALINMFTKC-DALAAA 556

Query: 287 RIIFERTKV-KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
            ++F++    K  V W+ ++ GY   G   EA+  F +M++E+ +PN+VT + I+ +   
Sbjct: 557 IVLFDKCGFEKSTVSWNIMMNGYLLHGQAEEAVATFRQMKVEKFQPNAVTFVNIVRAAAE 616

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
            S L  G+ VH  +++ G      +GN+L++MY+KCG I SS + F E++ +  VSW T+
Sbjct: 617 LSALRVGMSVHSSLIQCGFCSQTPVGNSLVDMYAKCGMIESSEKCFIEISNKYIVSWNTM 676

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           +S Y  HG    A+ LFL MQE+ ++PD+++ L++LSAC HAGLV+E + +F  + +  K
Sbjct: 677 LSAYAAHGLASCAVSLFLSMQENELKPDSVSFLSVLSACRHAGLVEEGKRIFEEMGERHK 736

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
           I   +EHYAC VDLLGK+G   +A +++  M +K S  +  +L+++ R+H  L ++    
Sbjct: 737 IEAEVEHYACMVDLLGKAGLFGEAVEMMRRMRVKTSVGVWGALLNSSRMHCNLWLSNAAL 796

Query: 526 HQLIEAEPENAANYT 540
            QL++ EP N ++Y+
Sbjct: 797 CQLVKLEPLNPSHYS 811



 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 147/513 (28%), Positives = 254/513 (49%), Gaps = 17/513 (3%)

Query: 34  IKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRD 93
           +KACA +   +  GL++H    + G ++D  I  +L+ MY K     SA Q+FD+M  +D
Sbjct: 107 LKACAGSMDFKK-GLRIHDLIAEMGLESDVYIGTALVEMYCKARDLVSARQVFDKMHVKD 165

Query: 94  TISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHA 153
            ++WN++++   QNG    +L +F +M  C   +    L  +I   S++ + ++ R +H 
Sbjct: 166 VVTWNTMVSGLAQNGCSSAALLLFHDMRSCCVDIDHVSLYNLIPAVSKLEKSDVCRCLHG 225

Query: 154 LVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYD 213
           LVI  G        S+ L+D+Y  C     A  VFE++  ++E SW  M++    +  ++
Sbjct: 226 LVIKKG---FIFAFSSGLIDMYCNCADLYAAESVFEEVWRKDESSWGTMMAAYAHNGFFE 282

Query: 214 TGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALM 273
             ++LF  M+   V+  +V     L A A + DL  G AIH YA   G   D  ++ +LM
Sbjct: 283 EVLELFDLMRNYDVRMNKVAAASALQAAAYVGDLVKGIAIHDYAVQQGLIGDVSVATSLM 342

Query: 274 HMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNS 333
            MY +C E L  A  +F   + +DVV WS++I  Y Q+G   EA+ LF  M    I+PN+
Sbjct: 343 SMYSKCGE-LEIAEQLFINIEDRDVVSWSAMIASYEQAGQHDEAISLFRDMMRIHIKPNA 401

Query: 334 VTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNE 393
           VTL ++L  C   +    G  +HCY +KA +  ++    A+++MY+KCG  + + + F  
Sbjct: 402 VTLTSVLQGCAGVAASRLGKSIHCYAIKADIESELETATAVISMYAKCGRFSPALKAFER 461

Query: 394 MAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEA 453
           +  +D V++  L  GY   G   +A  ++  M+  GV PD+ T++ +L  C         
Sbjct: 462 LPIKDAVAFNALAQGYTQIGDANKAFDVYKNMKLHGVCPDSRTMVGMLQTCAFCSDYARG 521

Query: 454 ETLFNNVMK-----EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSL 508
             ++  ++K     E  +A A+ +     D L  +  + D C        + ST   + +
Sbjct: 522 SCVYGQIIKHGFDSECHVAHALINMFTKCDALAAAIVLFDKC------GFEKSTVSWNIM 575

Query: 509 VSACRIHGRLEVAEMLAHQL-IEAEPENAANYT 540
           ++   +HG+ E A     Q+ +E    NA  + 
Sbjct: 576 MNGYLLHGQAEEAVATFRQMKVEKFQPNAVTFV 608



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 130/465 (27%), Positives = 226/465 (48%), Gaps = 28/465 (6%)

Query: 48  LQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQN 107
           LQ+H + + SG        N LI+ Y+ F + + +  +FD +     + WNS+I  +T+ 
Sbjct: 22  LQVHGSLIVSGLKP----HNQLINAYSLFQRQDLSRVIFDSVRDPGVVLWNSMIRGYTRA 77

Query: 108 GFYVRSLEMFREM----------YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIV 157
           G +  +L  F  M          Y   F LKA         C+   + + G +IH L I 
Sbjct: 78  GLHREALGFFGYMSEEKGIDPDKYSFTFALKA---------CAGSMDFKKGLRIHDL-IA 127

Query: 158 DGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGID 217
           +   E  V++ TAL+++Y K    + A +VF++M +++ V+W  M+SG   +      + 
Sbjct: 128 EMGLESDVYIGTALVEMYCKARDLVSARQVFDKMHVKDVVTWNTMVSGLAQNGCSSAALL 187

Query: 218 LFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYC 277
           LF  M+   V    V+L  ++ A ++L      + +HG     GF F    S+ L+ MYC
Sbjct: 188 LFHDMRSCCVDIDHVSLYNLIPAVSKLEKSDVCRCLHGLVIKKGFIF--AFSSGLIDMYC 245

Query: 278 ECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLL 337
            C + L+ A  +FE    KD   W +++  Y+ +G   E ++LF  MR   +  N V   
Sbjct: 246 NCAD-LYAAESVFEEVWRKDESSWGTMMAAYAHNGFFEEVLELFDLMRNYDVRMNKVAAA 304

Query: 338 AILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR 397
           + L +      L  G+ +H Y ++ GL  DVS+  +LM+MYSKCG +  + Q+F  +  R
Sbjct: 305 SALQAAAYVGDLVKGIAIHDYAVQQGLIGDVSVATSLMSMYSKCGELEIAEQLFINIEDR 364

Query: 398 DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLF 457
           D VSW+ +I+ Y   G  +EA+ LF +M    ++P+A+T+ ++L  C      +  +++ 
Sbjct: 365 DVVSWSAMIASYEQAGQHDEAISLFRDMMRIHIKPNAVTLTSVLQGCAGVAASRLGKSIH 424

Query: 458 NNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPST 502
              +K   I   +E     + +  K G+   A K    +P+K + 
Sbjct: 425 CYAIK-ADIESELETATAVISMYAKCGRFSPALKAFERLPIKDAV 468


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  308 bits (788), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 184/581 (31%), Positives = 312/581 (53%), Gaps = 27/581 (4%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHF--GLQLHCTALKSGSDADPVISNSLISMYAKFSKP 79
           G   ++  L S+  AC+  +       G Q+H    + G       +N+L++MYAK  + 
Sbjct: 108 GFEPSSFTLVSMALACSNLRKRDGLWLGKQIHGCCFRKGH-WRTFSNNALMAMYAKLGRL 166

Query: 80  ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLC 139
           + A  L      RD ++WNS+I+ F+QN  ++ +L   R M L G        A ++  C
Sbjct: 167 DDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPAC 226

Query: 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSW 199
           S +  L  G++IHA  +       + FV +AL+D+Y  C        VF+ ++ R    W
Sbjct: 227 SHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLW 286

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQRE-GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258
            AMI+G   S++ +  + LF  M+   G+     T++ ++ A      +   + IHGY  
Sbjct: 287 NAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVI 346

Query: 259 CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAM 318
             G + + +L  AL+ MY    + +  ++ IF+  + +D+V W++II  Y   G  S+A+
Sbjct: 347 KRGLETNRYLQNALIDMYSRMGD-IKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDAL 405

Query: 319 KLFSRM-RLER---------------IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
            L   M R+E                 +PNS+TL+ +L  C   S L+ G  +H Y ++ 
Sbjct: 406 LLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRN 465

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
            L   V++G+AL++MY+KCG +  + ++F++M  R+ ++W  +I  YG HG G+E+L+LF
Sbjct: 466 LLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVIIMAYGMHGKGKESLELF 525

Query: 423 LEMQESG-----VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYV 477
            +M   G     V+P  +T +A+ ++C+H+G+V E  +LF+ +  E  I  A +HYAC V
Sbjct: 526 EDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKNEHGIEPAPDHYACIV 585

Query: 478 DLLGKSGKIEDACKVVSTMPMK-PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENA 536
           DL+G++GK+E+A  +V+TMP         SSL+ ACRI+  +E+ E+ A  L++ +P+ A
Sbjct: 586 DLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGACRIYHNIEIGEIAAENLLQLQPDVA 645

Query: 537 ANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           ++Y LLS + S +G W  A  + R M+A G+ K  G S IE
Sbjct: 646 SHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEPGCSWIE 686



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 162/559 (28%), Positives = 275/559 (49%), Gaps = 35/559 (6%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALK--SGSDADPVISNSLISMYAKFSK 78
           SG   +    P+V+KA A  Q   + G Q+H    K   GS +   I N+L++MY K   
Sbjct: 4   SGFSPDNFAFPAVLKAVAGIQ-ELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGG 62

Query: 79  PESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISL 138
              AY++FD +  RD +SWNSII+   +   +  +++ FR M + GF   +  L  +   
Sbjct: 63  LGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALA 122

Query: 139 CSQIGE---LELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           CS + +   L LG+QIH      G +    F + AL+ +Y+K      A  +      R+
Sbjct: 123 CSNLRKRDGLWLGKQIHGCCFRKGHWR--TFSNNALMAMYAKLGRLDDAKSLLVLFEDRD 180

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
            V+W +MIS    ++ +   +   R M  EGVKP  VT   VL AC+ L  LR GK IH 
Sbjct: 181 LVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHA 240

Query: 256 YAYCCGFDFDHH-LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
           YA       ++  + +AL+ MYC C + +   R++F+    + + +W+++I GY+QS   
Sbjct: 241 YALRTDDVIENSFVGSALVDMYCNCGQ-VESGRLVFDSVLDRKIGLWNAMIAGYAQSEHD 299

Query: 315 SEAMKLFSRMRLER-IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNA 373
            +A+ LF  M     +  N+ T+ +I+ +  R   +S   G+H Y++K GL  +  + NA
Sbjct: 300 EKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNA 359

Query: 374 LMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ------- 426
           L++MYS+ G I +S +IF+ M  RD VSW T+I+ Y   G   +AL L  EMQ       
Sbjct: 360 LIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKST 419

Query: 427 ---------ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYV 477
                    +   +P++IT++ +L  C     + + + +    ++   +A  +   +  V
Sbjct: 420 YDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIR-NLLASQVTVGSALV 478

Query: 478 DLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGR----LEVAEMLAHQLIEAEP 533
           D+  K G +  A +V   MP++ +    + ++ A  +HG+    LE+ E +  +  +   
Sbjct: 479 DMYAKCGCLNLARRVFDQMPIR-NVITWNVIIMAYGMHGKGKESLELFEDMVAEGAKGGE 537

Query: 534 ENAANYTLLSMV--CSESG 550
                 T +++   CS SG
Sbjct: 538 VKPTEVTFIALFASCSHSG 556



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 120/256 (46%), Gaps = 23/256 (8%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E+ L L+ +    +GLYSN   + S++ A    +        +H   +K G + +  + N
Sbjct: 300 EKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISR-KEGIHGYVIKRGLETNRYLQN 358

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL----- 122
           +LI MY++    +++ ++FD M  RD +SWN+II  +   G    +L +  EM       
Sbjct: 359 ALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKS 418

Query: 123 -----------CGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTAL 171
                        F   +  L  ++  C+ +  L  G++IHA  I +      V V +AL
Sbjct: 419 TYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRN-LLASQVTVGSAL 477

Query: 172 LDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG----- 226
           +D+Y+KC    +A RVF+QM IRN ++W  +I            ++LF  M  EG     
Sbjct: 478 VDMYAKCGCLNLARRVFDQMPIRNVITWNVIIMAYGMHGKGKESLELFEDMVAEGAKGGE 537

Query: 227 VKPTRVTLTIVLLACA 242
           VKPT VT   +  +C+
Sbjct: 538 VKPTEVTFIALFASCS 553


>gi|15217514|ref|NP_177305.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169720|sp|Q9C9I6.1|PP116_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g71490
 gi|12323739|gb|AAG51835.1|AC016163_24 unknown protein; 40702-42747 [Arabidopsis thaliana]
 gi|56381899|gb|AAV85668.1| At1g71490 [Arabidopsis thaliana]
 gi|56790238|gb|AAW30036.1| At1g71490 [Arabidopsis thaliana]
 gi|332197086|gb|AEE35207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 681

 Score =  308 bits (788), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 177/569 (31%), Positives = 297/569 (52%), Gaps = 38/569 (6%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G+Q+H   + SG +   V+   L++ Y+ F+    A  + +       + WN +I  + +
Sbjct: 62  GVQVHAHCISSGVEYHSVLVPKLVTFYSAFNLHNEAQSIIENSDILHPLPWNVLIASYAK 121

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           N  +   +  ++ M   G    A     ++  C +  ++  GR +H  + V  S++ S++
Sbjct: 122 NELFEEVIAAYKRMVSKGIRPDAFTYPSVLKACGETLDVAFGRVVHGSIEVS-SYKSSLY 180

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMIS---------------------- 204
           V  AL+ +Y +  +  IA R+F++M  R+ VSW A+I+                      
Sbjct: 181 VCNALISMYKRFRNMGIARRLFDRMFERDAVSWNAVINCYASEGMWSEAFELFDKMWFSG 240

Query: 205 -------------GCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGK 251
                        GC+ + NY   + L   M+        V + I L AC+ +  +R GK
Sbjct: 241 VEVSVITWNIISGGCLQTGNYVGALGLISRMRNFPTSLDPVAMIIGLKACSLIGAIRLGK 300

Query: 252 AIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQS 311
            IHG A    +D   ++   L+ MY +C +  H A I+F +T+   +  W+SII GY+Q 
Sbjct: 301 EIHGLAIHSSYDGIDNVRNTLITMYSKCKDLRH-ALIVFRQTEENSLCTWNSIISGYAQL 359

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS-I 370
               EA  L   M +   +PNS+TL +IL  C R + L HG   HCYI++     D + +
Sbjct: 360 NKSEEASHLLREMLVAGFQPNSITLASILPLCARIANLQHGKEFHCYILRRKCFKDYTML 419

Query: 371 GNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV 430
            N+L+++Y+K G I ++ Q+ + M+ RD V++T+LI GYG  G G  AL LF EM  SG+
Sbjct: 420 WNSLVDVYAKSGKIVAAKQVSDLMSKRDEVTYTSLIDGYGNQGEGGVALALFKEMTRSGI 479

Query: 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDAC 490
           +PD +TV+A+LSAC+H+ LV E E LF  +  E  I   ++H++C VDL G++G +  A 
Sbjct: 480 KPDHVTVVAVLSACSHSKLVHEGERLFMKMQCEYGIRPCLQHFSCMVDLYGRAGFLAKAK 539

Query: 491 KVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESG 550
            ++  MP KPS    ++L++AC IHG  ++ +  A +L+E +PEN   Y L++ + + +G
Sbjct: 540 DIIHNMPYKPSGATWATLLNACHIHGNTQIGKWAAEKLLEMKPENPGYYVLIANMYAAAG 599

Query: 551 NWLGAEEVWRVMRAKGLSKSYGFSRIENE 579
           +W    EV  +MR  G+ K  G + I+ +
Sbjct: 600 SWSKLAEVRTIMRDLGVKKDPGCAWIDTD 628



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 113/244 (46%), Gaps = 7/244 (2%)

Query: 237 VLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH-PARIIFERTKV 295
           +L AC ++R    G  +H +    G ++   L   L+  Y      LH  A+ I E + +
Sbjct: 49  LLSACVDVRAFLAGVQVHAHCISSGVEYHSVLVPKLVTFYSAFN--LHNEAQSIIENSDI 106

Query: 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV 355
              + W+ +I  Y+++    E +  + RM  + I P++ T  ++L +C     ++ G  V
Sbjct: 107 LHPLPWNVLIASYAKNELFEEVIAAYKRMVSKGIRPDAFTYPSVLKACGETLDVAFGRVV 166

Query: 356 HCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYG 415
           H  I  +     + + NAL++MY +  ++  + ++F+ M  RD VSW  +I+ Y   G  
Sbjct: 167 HGSIEVSSYKSSLYVCNALISMYKRFRNMGIARRLFDRMFERDAVSWNAVINCYASEGMW 226

Query: 416 EEALQLFLEMQESGVEPDAITVLAILSAC----NHAGLVKEAETLFNNVMKEKKIALAIE 471
            EA +LF +M  SGVE   IT   I   C    N+ G +     + N       +A+ I 
Sbjct: 227 SEAFELFDKMWFSGVEVSVITWNIISGGCLQTGNYVGALGLISRMRNFPTSLDPVAMIIG 286

Query: 472 HYAC 475
             AC
Sbjct: 287 LKAC 290



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 5/138 (3%)

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLL-----AILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           G L +A K FS +RL+     S  L+     ++LS+C        G+ VH + + +G+ +
Sbjct: 17  GHLHDAFKTFSLLRLQSSSAVSDDLVLHSAASLLSACVDVRAFLAGVQVHAHCISSGVEY 76

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
              +   L+  YS       +  I         + W  LI+ Y  +   EE +  +  M 
Sbjct: 77  HSVLVPKLVTFYSAFNLHNEAQSIIENSDILHPLPWNVLIASYAKNELFEEVIAAYKRMV 136

Query: 427 ESGVEPDAITVLAILSAC 444
             G+ PDA T  ++L AC
Sbjct: 137 SKGIRPDAFTYPSVLKAC 154


>gi|28558786|gb|AAO45757.1| selenium binding protein-like protein [Cucumis melo subsp. melo]
          Length = 565

 Score =  307 bits (787), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 177/539 (32%), Positives = 302/539 (56%), Gaps = 12/539 (2%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYA--KFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           Q+H   +K+    + +  + LI   A  +    E A  +FD+        WNS+I  +  
Sbjct: 23  QIHSLMIKTSVVKNIIPCSRLIDFCANSELGDIEYARTVFDQTDQLTVYVWNSMIKGYCN 82

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
            G    +L M+ EM   GF         ++ +CS I  L  G+ +H  ++  G FEL V+
Sbjct: 83  GGDKFGALFMYEEMQRKGFYPDHFTFPFVLKVCSAIDLLVYGQSVHNRIVKTG-FELDVY 141

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
            S+ LL++Y  C      L+VFE +   N V+WT++I+G +++      + LF+ M+ EG
Sbjct: 142 TSSCLLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEG 201

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFD-------FDHHLSAALMHMYCEC 279
           V+P  +T+T  L A A  RD+  GK +       G D       F+  L+ A+M MY +C
Sbjct: 202 VEPNEITMTTALAAAARCRDIHTGKLVRYRLRQLGLDPFHTNSRFNVILATAIMDMYAKC 261

Query: 280 TEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAI 339
            + L  AR +F++   +++V+W+S+I  +SQ G  +EA++LF  M L    PN  T L++
Sbjct: 262 GK-LVTARNLFDKMPQRNLVVWNSMISAFSQYGRGAEALRLFVDMELAGFVPNKATFLSV 320

Query: 340 LSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDF 399
           + +CT   F S G  +H  ++KA  +  V+IG ALM+MY+K G   ++ +IF+++  +D 
Sbjct: 321 IRACTHLRFRSTGQSLHARVLKANFHEFVAIGTALMDMYAKSGDADTALKIFSKLRKKDV 380

Query: 400 VSWTTLISGYGFHGYGEEALQLFLEMQESG-VEPDAITVLAILSACNHAGLVKEAETLFN 458
           ++WTT+ISG    G G+EAL +F  M+E   V PD IT +A+L AC+H GLV+E +  F 
Sbjct: 381 MAWTTMISGLAIQGKGKEALNVFRRMEEEAEVAPDQITYIAVLWACSHLGLVEEGQKHFT 440

Query: 459 NVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRL 518
           ++M+   I   +EHY C +DLL ++G  E+A +++  MP +P+  ILSS+++ C ++G +
Sbjct: 441 SMMEVYGIEPTMEHYGCMIDLLSRAGHSEEAEELLVKMPTQPNATILSSILNGCEMYGNV 500

Query: 519 EVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +A  +   ++E +  ++  Y LLS + +++ NW   +    +++ K + K+ G S +E
Sbjct: 501 GLANRVKSHIVELKNSSSGVYVLLSNIHAKACNWEEMKLARDILKHKKIGKTLGNSFVE 559



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 112/477 (23%), Positives = 219/477 (45%), Gaps = 19/477 (3%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           +E+   G Y +    P V+K C+ A     +G  +H   +K+G + D   S+ L++MY  
Sbjct: 94  EEMQRKGFYPDHFTFPFVLKVCS-AIDLLVYGQSVHNRIVKTGFELDVYTSSCLLNMYVS 152

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
                S  ++F+ +P  + ++W S+I  F  N     +L +F++M   G       +   
Sbjct: 153 CGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEITMTTA 212

Query: 136 ISLCSQIGELELGRQIH------ALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
           ++  ++  ++  G+ +        L     +   +V ++TA++D+Y+KC   + A  +F+
Sbjct: 213 LAAAARCRDIHTGKLVRYRLRQLGLDPFHTNSRFNVILATAIMDMYAKCGKLVTARNLFD 272

Query: 190 QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
           +M  RN V W +MIS           + LF  M+  G  P + T   V+ AC  LR    
Sbjct: 273 KMPQRNLVVWNSMISAFSQYGRGAEALRLFVDMELAGFVPNKATFLSVIRACTHLRFRST 332

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
           G+++H       F     +  ALM MY +  +A   A  IF + + KDV+ W+++I G +
Sbjct: 333 GQSLHARVLKANFHEFVAIGTALMDMYAKSGDA-DTALKIFSKLRKKDVMAWTTMISGLA 391

Query: 310 QSGDLSEAMKLFSRMRLE-RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA-GLNFD 367
             G   EA+ +F RM  E  + P+ +T +A+L +C+    +  G      +M+  G+   
Sbjct: 392 IQGKGKEALNVFRRMEEEAEVAPDQITYIAVLWACSHLGLVEEGQKHFTSMMEVYGIEPT 451

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS-WTTLISG---YGFHGYGEEALQLFL 423
           +     ++++ S+ G    + ++  +M  +   +  +++++G   YG  G         +
Sbjct: 452 MEHYGCMIDLLSRAGHSEEAEELLVKMPTQPNATILSSILNGCEMYGNVGLANRVKSHIV 511

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLL 480
           E++ S     +  V  +LS  +      E   L  +++K KKI   + +    ++LL
Sbjct: 512 ELKNS-----SSGVYVLLSNIHAKACNWEEMKLARDILKHKKIGKTLGNSFVEMNLL 563


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  307 bits (787), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 190/590 (32%), Positives = 306/590 (51%), Gaps = 49/590 (8%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTAL-KSGSDADPVIS----------NSLISMYAKFSKPE 80
           ++I+A  Y +T  +  + +H  AL KS + A  V            N+L+  Y+K     
Sbjct: 31  NIIRALPYPETFLYNNI-VHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAGLIS 89

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY--LCGFVLKAELLAGIISL 138
                F+++P RD ++WN +I  ++ +G    +++ +  M       + +  L+  ++ L
Sbjct: 90  EMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMT-MLKL 148

Query: 139 CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSK--------------------- 177
            S  G + LG+QIH  VI  G FE  + V + LL +Y+                      
Sbjct: 149 SSSNGHVSLGKQIHGQVIKLG-FESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVM 207

Query: 178 ----------CHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV 227
                     C     AL++F  M  ++ VSW AMI G   +      I+ FR M+ +G+
Sbjct: 208 YNSLMGGLLACGMIEDALQLFRGME-KDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGL 266

Query: 228 KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPAR 287
           K  +     VL AC  L  +  GK IH       F    ++ +AL+ MYC+C + LH A+
Sbjct: 267 KMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKC-KCLHYAK 325

Query: 288 IIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQS 347
            +F+R K K+VV W++++ GY Q+G   EA+K+F  M+   I+P+  TL   +S+C   S
Sbjct: 326 TVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVS 385

Query: 348 FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLIS 407
            L  G   H   + +GL   V++ N+L+ +Y KCG I  S ++FNEM  RD VSWT ++S
Sbjct: 386 SLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVS 445

Query: 408 GYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIA 467
            Y   G   E +QLF +M + G++PD +T+  ++SAC+ AGLV++ +  F  +  E  I 
Sbjct: 446 AYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIV 505

Query: 468 LAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQ 527
            +I HY+C +DL  +SG++E+A + ++ MP  P     ++L+SACR  G LE+ +  A  
Sbjct: 506 PSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAES 565

Query: 528 LIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           LIE +P + A YTLLS + +  G W    ++ R MR K + K  G S I+
Sbjct: 566 LIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIK 615



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 145/337 (43%), Gaps = 36/337 (10%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           +E+   GL  +     SV+ AC         G Q+H   +++       + ++LI MY K
Sbjct: 259 REMKVQGLKMDQYPFGSVLPACGGLGAINE-GKQIHACIIRTNFQDHIYVGSALIDMYCK 317

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
                 A  +FD M  ++ +SW +++  + Q G    ++++F +M   G       L   
Sbjct: 318 CKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQA 377

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           IS C+ +  LE G Q H   I  G     V VS +L+ LY KC     + R+F +M +R+
Sbjct: 378 ISACANVSSLEEGSQFHGKAITSGLIHY-VTVSNSLVTLYGKCGDIDDSTRLFNEMNVRD 436

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
            VSWTAM+S           I LF  M + G+KP  VTLT V+ AC+     R G    G
Sbjct: 437 AVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACS-----RAGLVEKG 491

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
             Y      ++ +  ++ H  C                          +I  +S+SG L 
Sbjct: 492 QRYFKLMTSEYGIVPSIGHYSC--------------------------MIDLFSRSGRLE 525

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHG 352
           EAM+  + M      P+++    +LS+C  +  L  G
Sbjct: 526 EAMRFINGMPF---PPDAIGWTTLLSACRNKGNLEIG 559


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  307 bits (787), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 177/515 (34%), Positives = 295/515 (57%), Gaps = 8/515 (1%)

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           N+LIS YAK S  E A+QLFDEMP  D++S+N++I  + + G    + ++F EM      
Sbjct: 78  NTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLD 137

Query: 127 LKAELLAGIISLCS-QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
           +    L+GII+ C   +G   L RQ+HAL +V G  +  V V  AL+  YSK      A 
Sbjct: 138 MDGFTLSGIITACGINVG---LIRQLHALSVVTG-LDSYVSVGNALITSYSKNGFLKEAR 193

Query: 186 RVFEQMV-IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
           R+F  +   R+EVSW +M+   +  +     ++L+  M   G+     TL  VL A   +
Sbjct: 194 RIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNV 253

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
           +DL  G   H      G+  + H+ + L+ +Y +C   +   R +F+     D+V+W+++
Sbjct: 254 QDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTM 313

Query: 305 IRGYSQSGDLS-EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           I GYS   DLS EA++ F ++++    P+  +L+ ++S+C+  S  S G  VH   +K  
Sbjct: 314 ISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLD 373

Query: 364 LNFD-VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
           +  + +S+ NAL+ MYSKCG++  +  +F+ M   + VS+ ++I+GY  HG G ++L LF
Sbjct: 374 IPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLF 433

Query: 423 LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGK 482
             M E G  P  IT +++L+AC H G V++ +  FN + ++  I     H++C +DLLG+
Sbjct: 434 QRMLEMGFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGR 493

Query: 483 SGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLL 542
           +GK+ +A +++ T+P  P     S+L+ ACRIHG +E+A   A++L++ +P NAA Y +L
Sbjct: 494 AGKLSEAERLIETIPFDPGFFFWSALLGACRIHGNVELAIKAANRLLQLDPLNAAPYVML 553

Query: 543 SMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           + + S++G    A  V ++MR +G+ K  G S IE
Sbjct: 554 ANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIE 588


>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Vitis vinifera]
          Length = 662

 Score =  307 bits (787), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 186/618 (30%), Positives = 311/618 (50%), Gaps = 62/618 (10%)

Query: 3   SKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA- 61
           S HF  + LHL       S     + I   ++K C   Q  +    Q+  T      D  
Sbjct: 14  SLHFLSKPLHLSTS----SHFTKKSCIF--LLKNCKSMQHLKQIQTQILRTGFHQSGDTL 67

Query: 62  --------DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRS 113
                   DP I N              A ++F+ +       +N +I  FT+NG + ++
Sbjct: 68  NKFMVCCTDPSIGNL-----------HYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKA 116

Query: 114 LEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLD 173
           + +FR++   G          +      +GE+  G +++  V+  G  E   +V  +L+D
Sbjct: 117 VLLFRQLREEGLSPDNFTYPFVFKAIGCLGEVREGEKVYGFVVKSG-LEFDTYVCNSLMD 175

Query: 174 LYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG-VKPTRV 232
           +Y++        +VFE+M  R+ VSW  +ISG +  + Y+  +D+FR MQ++  ++P   
Sbjct: 176 MYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEA 235

Query: 233 TLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTE----------- 281
           T+   L AC  L+ L  GK IH Y       F   +  AL+ MYC+C             
Sbjct: 236 TVVSTLSACIALKMLELGKEIHRYVRE-QLGFTIKIGNALVDMYCKCGHLSIAREIFNDM 294

Query: 282 -------------------ALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFS 322
                               L  AR +FER+ V+DVV+W+++I GY Q     +A+ LF 
Sbjct: 295 PIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFR 354

Query: 323 RMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCG 382
            M+++R+ P+  TL+A+L+ C +   L  G  +H YI +  +  D  +G AL+ MY+KCG
Sbjct: 355 EMQIKRVSPDRFTLVALLTGCAQLGTLEQGKWIHGYIDENKIMIDAVVGTALIEMYAKCG 414

Query: 383 SITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILS 442
            I  S +IFN +  +D  SWT++I G   +G   +AL+LF EM ++GV+PD IT + +LS
Sbjct: 415 FIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLS 474

Query: 443 ACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPST 502
           AC+H GLV+E    F ++    +I   +EHY C +DLLG++G++++A +++   P   + 
Sbjct: 475 ACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEELIEKSPNVNNE 534

Query: 503 RIL---SSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVW 559
            I+    +L+SACR HG +E+ E +A +L+  E  +++ +TLL+ + + +  W    +V 
Sbjct: 535 VIVPLYGALLSACRTHGNVEMGERVAKRLVGIESGDSSVHTLLANIYASADRWEDVTKVR 594

Query: 560 RVMRAKGLSKSYGFSRIE 577
           R M+  G+ K  G S +E
Sbjct: 595 RKMKDLGVKKVPGCSSVE 612


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 166/550 (30%), Positives = 301/550 (54%), Gaps = 36/550 (6%)

Query: 62  DPVI--SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFRE 119
           +P I   NS++  Y K    + A +LFD MP RD +SWN +++  +Q+G    +L+M  +
Sbjct: 201 EPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVD 260

Query: 120 MYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH 179
           M   G  L +      ++ C+++  L  G+Q+HA VI +    +  +V++AL++LY+KC 
Sbjct: 261 MQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPC-IDPYVASALVELYAKCG 319

Query: 180 HWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLL 239
            +  A  VF  +  RN V+WT +I+G +    +   ++LF  M+ E +   +  L  ++ 
Sbjct: 320 CFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLIS 379

Query: 240 ACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVV 299
            C    DL  G+ +H      G      +S +L+ MY +C + L  A  IF     KD+V
Sbjct: 380 GCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKC-DNLQSAESIFRFMNEKDIV 438

Query: 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERI------------------------------ 329
            W+S+I  +SQ G++++A + F  M  + +                              
Sbjct: 439 SWTSMITAHSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEK 498

Query: 330 --EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
              P+ VT + +   C        G  +    +K GL  D S+ NA++ MYSKCG I  +
Sbjct: 499 DVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEA 558

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHA 447
            ++F+ +  +D VSW  +I+GY  HG G++A+++F ++ + G +PD I+ +A+LS C+H+
Sbjct: 559 RKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHS 618

Query: 448 GLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSS 507
           GLV+E ++ F+ + +   I+  +EH++C VDLLG++G + +A  ++  MPMKP+  +  +
Sbjct: 619 GLVQEGKSYFDMMKRVHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGA 678

Query: 508 LVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567
           L+SAC+IHG  E+AE+ A  + E +  ++ +Y L++ + +++G    + ++ ++MR KG+
Sbjct: 679 LLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGI 738

Query: 568 SKSYGFSRIE 577
            K+ G+S +E
Sbjct: 739 KKNPGYSWME 748



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 144/553 (26%), Positives = 251/553 (45%), Gaps = 71/553 (12%)

Query: 64  VISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC 123
           +  N +++ Y K  +   A +LF  MP RD  SWN++++ + Q+  Y+ SLE F  M+  
Sbjct: 72  ITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHRS 131

Query: 124 G-FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKC---- 178
           G     A   A  +  C  +GE  L  Q+  +V   GS + S  V+ AL+D++ +C    
Sbjct: 132 GDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSD-VAAALVDMFVRCGTVD 190

Query: 179 -----------------HHWLI----------ALRVFEQMVIRNEVSWTAMISGCIDSQN 211
                            +  L+          AL +F+ M  R+ VSW  M+S    S  
Sbjct: 191 LASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGR 250

Query: 212 YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAA 271
               +D+   MQ +GV+    T T  L ACA L  LR GK +H          D ++++A
Sbjct: 251 VREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASA 310

Query: 272 LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP 331
           L+ +Y +C      A+ +F     ++ V W+ +I G+ Q G  +E+++LF++MR E +  
Sbjct: 311 LVELYAKCG-CFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTL 369

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIF 391
           +   L  ++S C  +  L  G  +H   +K+G    V + N+L++MY+KC ++ S+  IF
Sbjct: 370 DQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIF 429

Query: 392 NEMAARDFVSWTTLIS-------------------------------GYGFHGYGEEALQ 420
             M  +D VSWT++I+                                Y  HG  E+ L+
Sbjct: 430 RFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLR 489

Query: 421 LF-LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479
           ++ + + E  V PD +T + +   C   G  K  + +    +K   I L        + +
Sbjct: 490 MYNVMLSEKDVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLI-LDTSVANAVITM 548

Query: 480 LGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE--AEPENAA 537
             K G+I +A KV   + +K      +++++    HG  + A  +   +++  A+P+  +
Sbjct: 549 YSKCGRILEARKVFDFLNVKDIVS-WNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYIS 607

Query: 538 NYTLLSMVCSESG 550
              +LS  CS SG
Sbjct: 608 YVAVLSG-CSHSG 619



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/437 (25%), Positives = 208/437 (47%), Gaps = 39/437 (8%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           ++   G+  ++    S + ACA   + + +G QLH   +++    DP ++++L+ +YAK 
Sbjct: 260 DMQSKGVRLDSTTYTSSLTACARLSSLR-WGKQLHAQVIRNLPCIDPYVASALVELYAKC 318

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
              + A  +F+ +  R+ ++W  +I  F Q+G +  S+E+F +M      L    LA +I
Sbjct: 319 GCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLI 378

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH---------------- 180
           S C    +L LGRQ+H+L +  G  + +V VS +L+ +Y+KC +                
Sbjct: 379 SGCCSRMDLCLGRQLHSLCLKSGQIQ-AVVVSNSLISMYAKCDNLQSAESIFRFMNEKDI 437

Query: 181 --WL-------------IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
             W               A   F+ M  +N ++W AM+   I     + G+ ++  M  E
Sbjct: 438 VSWTSMITAHSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSE 497

Query: 226 -GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
             V+P  VT   +   CA+L   + G  I G     G   D  ++ A++ MY +C   L 
Sbjct: 498 KDVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILE 557

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
            AR +F+   VKD+V W+++I GYSQ G   +A+++F  +     +P+ ++ +A+LS C+
Sbjct: 558 -ARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCS 616

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIG--NALMNMYSKCGSITSSHQIFNEMAARDFVS- 401
               +  G   +  +MK   N    +   + ++++  + G +T +  + +EM  +     
Sbjct: 617 HSGLVQEGKS-YFDMMKRVHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEV 675

Query: 402 WTTLISGYGFHGYGEEA 418
           W  L+S    HG  E A
Sbjct: 676 WGALLSACKIHGNNELA 692



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 141/312 (45%), Gaps = 31/312 (9%)

Query: 164 SVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQ 223
           +V     +L+ Y K      A+ +F +M  R+  SW  ++SG   SQ Y   ++ F +M 
Sbjct: 70  NVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMH 129

Query: 224 REG-VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEA 282
           R G   P   T    + +C  L +      + G     G   D  ++AAL+ M+  C   
Sbjct: 130 RSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTV 189

Query: 283 LHPARI------------------------------IFERTKVKDVVIWSSIIRGYSQSG 312
              +R+                              +F+    +DVV W+ ++   SQSG
Sbjct: 190 DLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSG 249

Query: 313 DLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN 372
            + EA+ +   M+ + +  +S T  + L++C R S L  G  +H  +++     D  + +
Sbjct: 250 RVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVAS 309

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
           AL+ +Y+KCG    +  +FN +  R+ V+WT LI+G+  HG   E+++LF +M+   +  
Sbjct: 310 ALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTL 369

Query: 433 DAITVLAILSAC 444
           D   +  ++S C
Sbjct: 370 DQFALATLISGC 381



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/308 (21%), Positives = 115/308 (37%), Gaps = 68/308 (22%)

Query: 254 HGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGD 313
           HG     G      L   L+H Y  C       R++       +V+  + ++ GY + G 
Sbjct: 27  HGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTDIAHPNVITHNVMLNGYVKLGR 86

Query: 314 LSEAMKLFSRMRLERI--------------------------------EPNSVTLLAILS 341
           LS+A++LF RM    +                                 PN+ T    + 
Sbjct: 87  LSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMK 146

Query: 342 SCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSH------------- 388
           SC      S  L +   + K G   D  +  AL++M+ +CG++  +              
Sbjct: 147 SCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFC 206

Query: 389 ------------------QIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV 430
                             ++F+ M  RD VSW  ++S     G   EAL + ++MQ  GV
Sbjct: 207 RNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGV 266

Query: 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIED 488
             D+ T  + L+AC     ++  + L   V++       I+ Y  +  V+L  K G  ++
Sbjct: 267 RLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLP---CIDPYVASALVELYAKCGCFKE 323

Query: 489 ACKVVSTM 496
           A  V +++
Sbjct: 324 AKGVFNSL 331



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 96/200 (48%), Gaps = 2/200 (1%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E  L +Y   L    +  +     ++ K CA    ++  G Q+    +K G   D  ++N
Sbjct: 485 EDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGANK-LGDQIIGRTVKVGLILDTSVAN 543

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           ++I+MY+K  +   A ++FD +  +D +SWN++I  ++Q+G   +++E+F ++   G   
Sbjct: 544 AVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKP 603

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
                  ++S CS  G ++ G+    ++    +    +   + ++DL  +  H   A  +
Sbjct: 604 DYISYVAVLSGCSHSGLVQEGKSYFDMMKRVHNISPGLEHFSCMVDLLGRAGHLTEAKDL 663

Query: 188 FEQMVIRNEVS-WTAMISGC 206
            ++M ++     W A++S C
Sbjct: 664 IDEMPMKPTAEVWGALLSAC 683


>gi|414888053|tpg|DAA64067.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 754

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 176/533 (33%), Positives = 286/533 (53%), Gaps = 12/533 (2%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           QLH    ++G  AD  + N+L++ YA+ +  ++A ++F+EMP RD +SWN+++    Q+G
Sbjct: 178 QLHALVSRAGIAADVFVGNALVTAYARGASLDAARKVFEEMPARDLVSWNALVCGLAQDG 237

Query: 109 -FYVRSLEMFREMYLCGFVLKAEL-LAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
                 + +F  M   G V    + +  +IS C   G+LELGRQIH   +  G  E  V 
Sbjct: 238 ECPAEVIRVFLRMLKHGGVRPDRISVCSVISACGGEGKLELGRQIHGFAVKLG-IEGHVS 296

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           ++  L+ +Y KC     A R+FE M  R+ VSWT ++S      + +  + LF  M R+G
Sbjct: 297 IANVLVAMYYKCGTPGCARRLFEFMGERDVVSWTTVMS-----MDREDAVSLFNGMMRDG 351

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           V P  VT   +L A       R G+ +H      G       + + + MY +    +  A
Sbjct: 352 VAPNEVTFVAILSAMPGHCPAREGQMVHAVCIKTGLSDKPAAANSFITMYAKLRR-MDDA 410

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
           ++IF      +V+ W+++I GY+Q+    +A++ F  M ++  +P+  T  +ILS+ T  
Sbjct: 411 KMIFGLMPHPEVIAWNALISGYAQNEMCQDALEAFLSM-VKITKPSETTFASILSAVTAV 469

Query: 347 SFLSHGLG--VHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
             +S   G   HC  +K GL     +  AL+++Y+K GS+  S + F E   R  ++WT 
Sbjct: 470 ETVSMAYGQMYHCQTLKLGLGASEYVSGALIDLYAKRGSLEESWKAFGETVHRSLIAWTA 529

Query: 405 LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK 464
           +IS    HG  +  + LF +M  SGV PD + +L++L+AC ++G       +F ++  + 
Sbjct: 530 IISANSKHGNYDGVVSLFNDMARSGVTPDGVVLLSVLTACRYSGFASLGREIFESMATKH 589

Query: 465 KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEML 524
              L  EHYAC VD+LG++G++E+A +++  MP  PS   + SL+ ACRIHG  +V E +
Sbjct: 590 GAELWPEHYACVVDMLGRAGRLEEAEELMLQMPSGPSVSAMQSLLGACRIHGNTDVGERV 649

Query: 525 AHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           A  L+E EP  +  Y LLS + +E G+W     V R MR  G+ K  GFS ++
Sbjct: 650 AGVLLETEPTESGAYVLLSNIYAEKGDWGAVARVRRKMRGMGVKKEVGFSWVD 702



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 144/474 (30%), Positives = 229/474 (48%), Gaps = 18/474 (3%)

Query: 23  LYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESA 82
           L +   + P+   A A A++       LH  A+ SG  A   ++NSL + YAK +   +A
Sbjct: 54  LQAGLPVSPTAFSA-AVARSGPDALPALHALAVISGLAAFAPVTNSLAARYAKGNSFAAA 112

Query: 83  YQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI-ISLCSQ 141
            ++F   P RDT S+N+I++          +L     M   G V    +   + +SL + 
Sbjct: 113 ARVFAAAPSRDTSSYNTILSATPDPD---DALAFAARMLRAGDVRPDAITFTVTLSLAAG 169

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
            GE  L RQ+HALV   G     VFV  AL+  Y++      A +VFE+M  R+ VSW A
Sbjct: 170 RGEGRLVRQLHALVSRAG-IAADVFVGNALVTAYARGASLDAARKVFEEMPARDLVSWNA 228

Query: 202 MISGCI-DSQNYDTGIDLF-RAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
           ++ G   D +     I +F R ++  GV+P R+++  V+ AC     L  G+ IHG+A  
Sbjct: 229 LVCGLAQDGECPAEVIRVFLRMLKHGGVRPDRISVCSVISACGGEGKLELGRQIHGFAVK 288

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
            G +    ++  L+ MY +C      AR +FE    +DVV W++++     S D  +A+ 
Sbjct: 289 LGIEGHVSIANVLVAMYYKCGTP-GCARRLFEFMGERDVVSWTTVM-----SMDREDAVS 342

Query: 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           LF+ M  + + PN VT +AILS+         G  VH   +K GL+   +  N+ + MY+
Sbjct: 343 LFNGMMRDGVAPNEVTFVAILSAMPGHCPAREGQMVHAVCIKTGLSDKPAAANSFITMYA 402

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           K   +  +  IF  M   + ++W  LISGY  +   ++AL+ FL M +   +P   T  +
Sbjct: 403 KLRRMDDAKMIFGLMPHPEVIAWNALISGYAQNEMCQDALEAFLSMVKI-TKPSETTFAS 461

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDACK 491
           ILSA      V  A     +  +  K+ L    Y     +DL  K G +E++ K
Sbjct: 462 ILSAVTAVETVSMAYGQMYHC-QTLKLGLGASEYVSGALIDLYAKRGSLEESWK 514



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 100/430 (23%), Positives = 188/430 (43%), Gaps = 18/430 (4%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           + + ++ + L   G+  +   + SVI AC   +     G Q+H  A+K G +    I+N 
Sbjct: 242 EVIRVFLRMLKHGGVRPDRISVCSVISACG-GEGKLELGRQIHGFAVKLGIEGHVSIANV 300

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           L++MY K   P  A +LF+ M  RD +SW ++++   ++     ++ +F  M   G    
Sbjct: 301 LVAMYYKCGTPGCARRLFEFMGERDVVSWTTVMSMDRED-----AVSLFNGMMRDGVAPN 355

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
                 I+S          G+ +HA+ I  G  +     + + + +Y+K      A  +F
Sbjct: 356 EVTFVAILSAMPGHCPAREGQMVHAVCIKTGLSDKPA-AANSFITMYAKLRRMDDAKMIF 414

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA--CAELRD 246
             M     ++W A+ISG   ++     ++ F +M +   KP+  T   +L A    E   
Sbjct: 415 GLMPHPEVIAWNALISGYAQNEMCQDALEAFLSMVKI-TKPSETTFASILSAVTAVETVS 473

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           +  G+  H      G     ++S AL+ +Y +   +L  +   F  T  + ++ W++II 
Sbjct: 474 MAYGQMYHCQTLKLGLGASEYVSGALIDLYAK-RGSLEESWKAFGETVHRSLIAWTAIIS 532

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV-HCYIMKAGLN 365
             S+ G+    + LF+ M    + P+ V LL++L++C    F S G  +      K G  
Sbjct: 533 ANSKHGNYDGVVSLFNDMARSGVTPDGVVLLSVLTACRYSGFASLGREIFESMATKHGAE 592

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS-WTTLISGYGFHG---YGEEALQL 421
                   +++M  + G +  + ++  +M +   VS   +L+     HG    GE    +
Sbjct: 593 LWPEHYACVVDMLGRAGRLEEAEELMLQMPSGPSVSAMQSLLGACRIHGNTDVGERVAGV 652

Query: 422 FLEMQ--ESG 429
            LE +  ESG
Sbjct: 653 LLETEPTESG 662


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 181/580 (31%), Positives = 310/580 (53%), Gaps = 44/580 (7%)

Query: 31  PSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMP 90
           P  IK+ + AQ       QLH   LK  + +     + L+S+Y+  +    + +LF+ + 
Sbjct: 16  PLSIKSRSQAQ-------QLHAQVLKFQASSL-CNLSLLLSIYSHINLLHDSLRLFNTIH 67

Query: 91  YRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQ 150
           +   ++W S+I C+T +G   +SL  F  M   G      +   ++  C+ + +L LG  
Sbjct: 68  FPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGES 127

Query: 151 IHALVIVDGSFELSVFVSTALLDLYSKC-------HHWLIALRVFEQMVIRNE------- 196
           +H  +I  G  +  ++   AL+++YSK           L A  VF++M  R         
Sbjct: 128 LHGYIIRVG-LDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSV 186

Query: 197 ------------------VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVL 238
                             VSW  +I+G   +  Y+  + + R M    +KP   TL+ VL
Sbjct: 187 LSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVL 246

Query: 239 LACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDV 298
              AE  D+  GK IHG +   G D D +++++L+ MY +CT      R +F     +D 
Sbjct: 247 PLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCR-VFTLLTERDG 305

Query: 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCY 358
           + W+SII G  Q+G   E ++ F +M + +I+P S +  +I+ +C   + L  G  +H Y
Sbjct: 306 ISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGY 365

Query: 359 IMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEA 418
           I + G + ++ I ++L++MY+KCG+I ++ QIF+ M  RD VSWT +I G   HG   +A
Sbjct: 366 ITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDA 425

Query: 419 LQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVD 478
           ++LF +M+  G++P+ +  +A+L+AC+H GLV EA   FN++ ++  IA  +EHYA   D
Sbjct: 426 IELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSD 485

Query: 479 LLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAAN 538
           LLG++G++E+A   +  M + P+  I ++L+SACR+H  +++AE +A++++E +P N   
Sbjct: 486 LLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHXNIDMAEKVANRILEVDPNNTGA 545

Query: 539 YTLLSMVCSESGNWLGAEEVWRV-MRAKGLSKSYGFSRIE 577
           Y LL+ + S +  W  A + WR  MR  G+ K+   S IE
Sbjct: 546 YILLANIYSAARRWKEAAK-WRASMRRIGIRKTPACSWIE 584



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 119/429 (27%), Positives = 215/429 (50%), Gaps = 43/429 (10%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFS--- 77
           SGLY +  + PSV+K+CA      + G  LH   ++ G D D    N+L++MY+K     
Sbjct: 100 SGLYPDHNVFPSVLKSCALLMD-LNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLE 158

Query: 78  -----------------------------KPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
                                          +S  ++F+ MP +D +SWN+II    +NG
Sbjct: 159 ESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNG 218

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
            Y  +L M REM        +  L+ ++ L ++  ++  G++IH   I  G  +  ++V+
Sbjct: 219 LYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQG-LDADIYVA 277

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
           ++L+D+Y+KC     + RVF  +  R+ +SW ++I+GC+ +  +D G+  FR M    +K
Sbjct: 278 SSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIK 337

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
           P   + + ++ ACA L  L  GK +HGY    GFD +  ++++L+ MY +C   +  A+ 
Sbjct: 338 PKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGN-IRTAKQ 396

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
           IF+R +++D+V W+++I G +  G   +A++LF +M  E I+PN V  +A+L++C+    
Sbjct: 397 IFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGL 456

Query: 349 LSHGLGVHCYIMKAGLNFDVSIG----NALMNMYSKCGSITSSHQIFNEMAARDFVS-WT 403
           +        Y      +F ++ G     A+ ++  + G +  ++     M      S W 
Sbjct: 457 VDEAWK---YFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWA 513

Query: 404 TLISGYGFH 412
           TL+S    H
Sbjct: 514 TLLSACRVH 522



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 82/237 (34%), Positives = 137/237 (57%), Gaps = 3/237 (1%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
            YE+TL + + E+  + L  ++  L SV+   A        G ++H  +++ G DAD  +
Sbjct: 219 LYEETLRMIR-EMGGANLKPDSFTLSSVLPLIA-ENVDISRGKEIHGCSIRQGLDADIYV 276

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
           ++SLI MYAK ++   + ++F  +  RD ISWNSII    QNG +   L  FR+M +   
Sbjct: 277 ASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKI 336

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
             K+   + I+  C+ +  L LG+Q+H  +  +G F+ ++F++++L+D+Y+KC +   A 
Sbjct: 337 KPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNG-FDENIFIASSLVDMYAKCGNIRTAK 395

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
           ++F++M +R+ VSWTAMI GC         I+LF  M+ EG+KP  V    VL AC+
Sbjct: 396 QIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACS 452



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 74/146 (50%), Gaps = 10/146 (6%)

Query: 2   VSKHFYEQTLHLYKQ----ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKS 57
           V    +++ L  ++Q    ++ P   YS ++I+P    ACA+  T  H G QLH    ++
Sbjct: 316 VQNGLFDEGLRFFRQMLMAKIKPKS-YSFSSIMP----ACAHLTT-LHLGKQLHGYITRN 369

Query: 58  GSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMF 117
           G D +  I++SL+ MYAK     +A Q+FD M  RD +SW ++I     +G    ++E+F
Sbjct: 370 GFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELF 429

Query: 118 REMYLCGFVLKAELLAGIISLCSQIG 143
            +M   G          +++ CS  G
Sbjct: 430 EQMETEGIKPNHVAFMAVLTACSHGG 455


>gi|357121739|ref|XP_003562575.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 770

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 169/530 (31%), Positives = 291/530 (54%), Gaps = 14/530 (2%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           LH   +K+G+  D  ++ SL+++Y +    + A  LFDEMP ++ ++W ++I  +T N  
Sbjct: 100 LHGHMVKTGTIVDIFVATSLVNVYMRCGNSQDARNLFDEMPEKNVVTWTALITGYTLNSQ 159

Query: 110 YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVST 169
            V +LE+F EM   G       L G++S C     ++LG+Q+H   I  G+  ++  +  
Sbjct: 160 PVLALEVFVEMLKLGRYPSDYTLGGMLSACVASHNIDLGKQVHGYTIKYGAASITS-IGN 218

Query: 170 ALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNY-DTGIDLFRAMQREGVK 228
           +L  LY+K  +    +R F+++  +N ++WT MIS C + +NY + G++LF  M +  V 
Sbjct: 219 SLCRLYTKSGNLESGIRAFKRIPDKNVITWTTMISACAEDENYTELGLNLFLDMLKGEVM 278

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
           P   TLT V+  C    D+  GK + G+ +  G   +  +  + M++Y    E     R+
Sbjct: 279 PNEFTLTSVMSLCGTSLDMNLGKQVQGFCFKIGCATNLPVKNSTMYLYLRKGETEEAMRL 338

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLS-----------EAMKLFSRMRLERIEPNSVTLL 337
            FE  +   V+ W+++I G++Q  D +           +A+K+F  +    ++P+  T  
Sbjct: 339 -FEEMEDNSVITWNAMISGFAQIMDSAKDDLHARSRGFQALKIFRDLVRSAMKPDLFTFS 397

Query: 338 AILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR 397
           +ILS C+    L  G  +H   +K G   DV + +AL+NMY+KCG I  + + F EM  R
Sbjct: 398 SILSVCSTMMALEQGEQIHAQTIKTGFLSDVVVNSALVNMYNKCGCIEYATKAFVEMPTR 457

Query: 398 DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLF 457
             V+WT++ISGY  HG   +A+QLF +M  +G +P+ IT +++LSAC++AGLV+EA   F
Sbjct: 458 TLVTWTSMISGYSQHGRPHDAIQLFEDMILAGAKPNEITFVSLLSACSYAGLVEEAMRYF 517

Query: 458 NNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGR 517
           + +  E  I   ++HY C +D+  + G+++DA   +     +P+  I SSLV+ CR HG 
Sbjct: 518 DMMQNEYHIEPLMDHYGCMIDMFVRLGRLDDAYAFIKRKGFEPNEAIWSSLVAGCRSHGN 577

Query: 518 LEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567
           +E+A   A +L+E +P+    Y LL  +   +G W     V ++ + + L
Sbjct: 578 MELAFYAADRLLELKPKVVETYVLLLNMYISTGRWRDVARVRKLSKHEDL 627



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 115/431 (26%), Positives = 207/431 (48%), Gaps = 28/431 (6%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G Y +   L  ++ AC  A  +   G Q+H   +K G+ +   I NSL  +Y K    ES
Sbjct: 174 GRYPSDYTLGGMLSACV-ASHNIDLGKQVHGYTIKYGAASITSIGNSLCRLYTKSGNLES 232

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVR-SLEMFREMYLCGFVLKAEL-LAGIISLC 139
             + F  +P ++ I+W ++I+   ++  Y    L +F +M L G V+  E  L  ++SLC
Sbjct: 233 GIRAFKRIPDKNVITWTTMISACAEDENYTELGLNLFLDM-LKGEVMPNEFTLTSVMSLC 291

Query: 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSW 199
               ++ LG+Q+       G    ++ V  + + LY +      A+R+FE+M   + ++W
Sbjct: 292 GTSLDMNLGKQVQGFCFKIGC-ATNLPVKNSTMYLYLRKGETEEAMRLFEEMEDNSVITW 350

Query: 200 TAMISG---CIDSQNYD--------TGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
            AMISG    +DS   D          + +FR + R  +KP   T + +L  C+ +  L 
Sbjct: 351 NAMISGFAQIMDSAKDDLHARSRGFQALKIFRDLVRSAMKPDLFTFSSILSVCSTMMALE 410

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMY--CECTEALHPARIIFERTKVKDVVIWSSIIR 306
            G+ IH      GF  D  +++AL++MY  C C E    A   F     + +V W+S+I 
Sbjct: 411 QGEQIHAQTIKTGFLSDVVVNSALVNMYNKCGCIEYATKA---FVEMPTRTLVTWTSMIS 467

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           GYSQ G   +A++LF  M L   +PN +T +++LS+C+    +   +  +  +M+   + 
Sbjct: 468 GYSQHGRPHDAIQLFEDMILAGAKPNEITFVSLLSACSYAGLVEEAM-RYFDMMQNEYHI 526

Query: 367 DVSIGN--ALMNMYSKCGSITSSHQIFNEMA-ARDFVSWTTLISGYGFHGYGEEAL---Q 420
           +  + +   +++M+ + G +  ++          +   W++L++G   HG  E A     
Sbjct: 527 EPLMDHYGCMIDMFVRLGRLDDAYAFIKRKGFEPNEAIWSSLVAGCRSHGNMELAFYAAD 586

Query: 421 LFLEMQESGVE 431
             LE++   VE
Sbjct: 587 RLLELKPKVVE 597



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 118/226 (52%), Gaps = 4/226 (1%)

Query: 221 AMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECT 280
           AM +EG          +L  C E   L   KA+HG+    G   D  ++ +L+++Y  C 
Sbjct: 68  AMLKEGQSVQSAMYVPLLHRCIETGSLGGAKALHGHMVKTGTIVDIFVATSLVNVYMRCG 127

Query: 281 EALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM-RLERIEPNSVTLLAI 339
            +   AR +F+    K+VV W+++I GY+ +     A+++F  M +L R  P+  TL  +
Sbjct: 128 NS-QDARNLFDEMPEKNVVTWTALITGYTLNSQPVLALEVFVEMLKLGRY-PSDYTLGGM 185

Query: 340 LSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDF 399
           LS+C     +  G  VH Y +K G     SIGN+L  +Y+K G++ S  + F  +  ++ 
Sbjct: 186 LSACVASHNIDLGKQVHGYTIKYGAASITSIGNSLCRLYTKSGNLESGIRAFKRIPDKNV 245

Query: 400 VSWTTLISGYG-FHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
           ++WTT+IS       Y E  L LFL+M +  V P+  T+ +++S C
Sbjct: 246 ITWTTMISACAEDENYTELGLNLFLDMLKGEVMPNEFTLTSVMSLC 291



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 98/201 (48%), Gaps = 8/201 (3%)

Query: 313 DLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN 372
           D  EAM +      E     S   + +L  C     L     +H +++K G   D+ +  
Sbjct: 62  DAQEAMAMLK----EGQSVQSAMYVPLLHRCIETGSLGGAKALHGHMVKTGTIVDIFVAT 117

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
           +L+N+Y +CG+   +  +F+EM  ++ V+WT LI+GY  +     AL++F+EM + G  P
Sbjct: 118 SLVNVYMRCGNSQDARNLFDEMPEKNVVTWTALITGYTLNSQPVLALEVFVEMLKLGRYP 177

Query: 433 DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL-AIEHYACYVDLLGKSGKIEDACK 491
              T+  +LSAC  +  +   + +    +K    ++ +I +  C   L  KSG +E   +
Sbjct: 178 SDYTLGGMLSACVASHNIDLGKQVHGYTIKYGAASITSIGNSLCR--LYTKSGNLESGIR 235

Query: 492 VVSTMPMKPSTRILSSLVSAC 512
               +P K +    ++++SAC
Sbjct: 236 AFKRIPDK-NVITWTTMISAC 255



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 115/240 (47%), Gaps = 21/240 (8%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           Q L +++ +L  S +  +     S++  C+     +  G Q+H   +K+G  +D V++++
Sbjct: 376 QALKIFR-DLVRSAMKPDLFTFSSILSVCSTMMALEQ-GEQIHAQTIKTGFLSDVVVNSA 433

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           L++MY K    E A + F EMP R  ++W S+I+ ++Q+G    ++++F +M L G    
Sbjct: 434 LVNMYNKCGCIEYATKAFVEMPTRTLVTWTSMISGYSQHGRPHDAIQLFEDMILAGAKPN 493

Query: 129 AELLAGIISLCSQIGELE--------LGRQIHALVIVDG-SFELSVFVSTALLDLYSKCH 179
                 ++S CS  G +E        +  + H   ++D     + +FV    LD      
Sbjct: 494 EITFVSLLSACSYAGLVEEAMRYFDMMQNEYHIEPLMDHYGCMIDMFVRLGRLD----DA 549

Query: 180 HWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLL 239
           +  I  + FE     NE  W+++++GC    N +  +  + A +   +KP  V   ++LL
Sbjct: 550 YAFIKRKGFEP----NEAIWSSLVAGCRSHGNME--LAFYAADRLLELKPKVVETYVLLL 603


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 177/533 (33%), Positives = 281/533 (52%), Gaps = 3/533 (0%)

Query: 46   FGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT 105
             G Q+H   ++SG D    + N LI+MY K      A  +F +M   D ISWN++I+  T
Sbjct: 953  LGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCT 1012

Query: 106  QNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQI-GELELGRQIHALVIVDGSFELS 164
             +G    S+ MF  +     +     +A ++  CS + G   L  QIHA  +  G   L 
Sbjct: 1013 LSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVV-LD 1071

Query: 165  VFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR 224
             FVSTAL+D+YSK      A  +F      +  SW A++ G I S ++   + L+  MQ 
Sbjct: 1072 SFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQE 1131

Query: 225  EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
             G +  ++TL     A   L  L+ GK IH      GF+ D  +++ ++ MY +C E + 
Sbjct: 1132 SGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGE-ME 1190

Query: 285  PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
             AR +F      D V W+++I G  ++G    A+  + +MRL +++P+  T   ++ +C+
Sbjct: 1191 SARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACS 1250

Query: 345  RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
              + L  G  +H  I+K    FD  +  +L++MY+KCG+I  +  +F     R   SW  
Sbjct: 1251 LLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNA 1310

Query: 405  LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK 464
            +I G   HG  +EALQ F  M+  GV PD +T + +LSAC+H+GLV EA   F ++ K  
Sbjct: 1311 MIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNY 1370

Query: 465  KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEML 524
             I   IEHY+C VD L ++G+IE+A KV+S+MP + S  +  +L++ACR+    E  + +
Sbjct: 1371 GIEPEIEHYSCLVDALSRAGRIEEAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRV 1430

Query: 525  AHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            A +L+  EP ++A Y LLS V + +  W        +MR   + K  GFS ++
Sbjct: 1431 AEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKVNVKKDPGFSWVD 1483



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/386 (28%), Positives = 198/386 (51%), Gaps = 10/386 (2%)

Query: 11   LHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLI 70
            +HL +  L P         + SV++AC+  +   +   Q+H  A+K+G   D  +S +LI
Sbjct: 1025 VHLLRDSLLPDQF-----TVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALI 1079

Query: 71   SMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE 130
             +Y+K  K E A  LF      D  SWN+I++ +  +G + ++L ++  M   G      
Sbjct: 1080 DVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQI 1139

Query: 131  LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQ 190
             L         +  L+ G+QIHA+V+  G F L +FV++ +LD+Y KC     A RVF +
Sbjct: 1140 TLVNAAKAAGGLVGLKQGKQIHAVVVKRG-FNLDLFVTSGVLDMYLKCGEMESARRVFSE 1198

Query: 191  MVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNG 250
            +   ++V+WT MISGC+++   +  +  +  M+   V+P   T   ++ AC+ L  L  G
Sbjct: 1199 IPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQG 1258

Query: 251  KAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQ 310
            + IH         FD  +  +L+ MY +C   +  AR +F+RT  + +  W+++I G +Q
Sbjct: 1259 RQIHANIVKLNCAFDPFVMTSLVDMYAKCGN-IEDARGLFKRTNTRRIASWNAMIVGLAQ 1317

Query: 311  SGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA--GLNFDV 368
             G+  EA++ F  M+   + P+ VT + +LS+C+    +S     + Y M+   G+  ++
Sbjct: 1318 HGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYE-NFYSMQKNYGIEPEI 1376

Query: 369  SIGNALMNMYSKCGSITSSHQIFNEM 394
               + L++  S+ G I  + ++ + M
Sbjct: 1377 EHYSCLVDALSRAGRIEEAEKVISSM 1402



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 115/400 (28%), Positives = 201/400 (50%), Gaps = 8/400 (2%)

Query: 93   DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIH 152
            D I WN  ++ F Q G    +++ F +M              ++++ + +  LELG+QIH
Sbjct: 899  DVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIH 958

Query: 153  ALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNY 212
             +V+  G  +  V V   L+++Y K      A  VF QM   + +SW  MISGC  S   
Sbjct: 959  GIVMRSG-LDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLE 1017

Query: 213  DTGIDLFRAMQREGVKPTRVTLTIVLLACAELR-DLRNGKAIHGYAYCCGFDFDHHLSAA 271
            +  + +F  + R+ + P + T+  VL AC+ L         IH  A   G   D  +S A
Sbjct: 1018 ECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTA 1077

Query: 272  LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP 331
            L+ +Y +  + +  A  +F      D+  W++I+ GY  SGD  +A++L+  M+      
Sbjct: 1078 LIDVYSKRGK-MEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERS 1136

Query: 332  NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIF 391
            + +TL+    +      L  G  +H  ++K G N D+ + + +++MY KCG + S+ ++F
Sbjct: 1137 DQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVF 1196

Query: 392  NEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVK 451
            +E+ + D V+WTT+ISG   +G  E AL  + +M+ S V+PD  T   ++ AC+    ++
Sbjct: 1197 SEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALE 1256

Query: 452  EAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDA 489
            +   +  N++   K+  A + +     VD+  K G IEDA
Sbjct: 1257 QGRQIHANIV---KLNCAFDPFVMTSLVDMYAKCGNIEDA 1293



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 117/460 (25%), Positives = 203/460 (44%), Gaps = 42/460 (9%)

Query: 38   AYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMP--YRDTI 95
            A A +    G + H   L SG   D  ++N+LI+MYAK     SA +LFD  P   RD +
Sbjct: 666  AIAASDLSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLV 725

Query: 96   SWNSIINCF------TQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGR 149
            +WN+I++        + +GF+     +FR +           LA +  +C          
Sbjct: 726  TWNAILSALAAHADKSHDGFH-----LFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASE 780

Query: 150  QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
             +H   +  G  +  VFV+ AL+++Y+K      A  +F+ M +R+ V W  M+   +D+
Sbjct: 781  SLHGYAVKIG-LQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDT 839

Query: 210  QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS 269
                  + LF    R G +P  VTL  +       +++   K    YA            
Sbjct: 840  CLEYEAMLLFSEFHRTGFRPDDVTLRTLSRVVKCKKNILELKQFKAYA------------ 887

Query: 270  AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
                             ++        DV++W+  +  + Q G+  EA+  F  M   R+
Sbjct: 888  ----------------TKLFMYDDDGSDVIVWNKALSRFLQRGEAWEAVDCFVDMINSRV 931

Query: 330  EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
              + +T + +L+     + L  G  +H  +M++GL+  VS+GN L+NMY K GS++ +  
Sbjct: 932  ACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARS 991

Query: 390  IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL 449
            +F +M   D +SW T+ISG    G  E ++ +F+ +    + PD  TV ++L AC+    
Sbjct: 992  VFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEG 1051

Query: 450  VKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
                 T  +    +  + L        +D+  K GK+E+A
Sbjct: 1052 GYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEA 1091



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 134/505 (26%), Positives = 229/505 (45%), Gaps = 49/505 (9%)

Query: 50   LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
            LH  A+K G   D  ++ +L+++YAKF     A  LFD M  RD + WN ++  +     
Sbjct: 782  LHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCL 841

Query: 110  YVRSLEMFREMYLCGFV---LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
               ++ +F E +  GF    +    L+ ++     I EL   +Q  A       +   +F
Sbjct: 842  EYEAMLLFSEFHRTGFRPDDVTLRTLSRVVKCKKNILEL---KQFKA-------YATKLF 891

Query: 167  VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
            +     D  S    W  AL  F Q   R E +W A              +D F  M    
Sbjct: 892  MYD---DDGSDVIVWNKALSRFLQ---RGE-AWEA--------------VDCFVDMINSR 930

Query: 227  VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
            V    +T  ++L   A L  L  GK IHG     G D    +   L++MY +   ++  A
Sbjct: 931  VACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAG-SVSRA 989

Query: 287  RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
            R +F +    D++ W+++I G + SG    ++ +F  +  + + P+  T+ ++L +C   
Sbjct: 990  RSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRAC--- 1046

Query: 347  SFLSHG----LGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSW 402
            S L  G      +H   MKAG+  D  +  AL+++YSK G +  +  +F      D  SW
Sbjct: 1047 SSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASW 1106

Query: 403  TTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462
              ++ GY   G   +AL+L++ MQESG   D IT++    A      +K+ + +   V+K
Sbjct: 1107 NAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVK 1166

Query: 463  EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAE 522
             +   L +   +  +D+  K G++E A +V S +P  P     ++++S C  +G+ E A 
Sbjct: 1167 -RGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIP-SPDDVAWTTMISGCVENGQEEHAL 1224

Query: 523  MLAHQ--LIEAEPENAANYTLLSMV 545
               HQ  L + +P+    YT  ++V
Sbjct: 1225 FTYHQMRLSKVQPD---EYTFATLV 1246



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 90/378 (23%), Positives = 163/378 (43%), Gaps = 38/378 (10%)

Query: 144  ELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM--VIRNEVSWTA 201
            +L LG++ HA ++  G      FV+  L+ +Y+KC     A ++F+      R+ V+W A
Sbjct: 671  DLSLGKRAHARILTSGHHP-DRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNA 729

Query: 202  MISG-CIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
            ++S     +     G  LFR ++R  V  TR TL  V   C         +++HGYA   
Sbjct: 730  ILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKI 789

Query: 261  GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
            G  +D  ++ AL+++Y +    +  AR++F+   V+DVV+W+ +++ Y  +    EAM L
Sbjct: 790  GLQWDVFVAGALVNIYAKFG-LIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLL 848

Query: 321  FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
            FS        P+ VTL  +      +  +        Y  K             + MY  
Sbjct: 849  FSEFHRTGFRPDDVTLRTLSRVVKCKKNILELKQFKAYATK-------------LFMYDD 895

Query: 381  CGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
             GS              D + W   +S +   G   EA+  F++M  S V  D +T + +
Sbjct: 896  DGS--------------DVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVM 941

Query: 441  LSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKP 500
            L+       ++  + +   VM+   +   +    C +++  K+G +  A  V   M    
Sbjct: 942  LTVVAGLNCLELGKQIHGIVMR-SGLDQVVSVGNCLINMYVKAGSVSRARSVFGQM---N 997

Query: 501  STRILS--SLVSACRIHG 516
               ++S  +++S C + G
Sbjct: 998  EVDLISWNTMISGCTLSG 1015



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 76/168 (45%), Gaps = 8/168 (4%)

Query: 337 LAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEM-- 394
            +IL      S LS G   H  I+ +G + D  + N L+ MY+KCGS++S+ ++F+    
Sbjct: 660 FSILRQAIAASDLSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPD 719

Query: 395 AARDFVSWTTLISGYGFHG-YGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEA 453
             RD V+W  ++S    H     +   LF  ++ S V     T+  +   C  +     +
Sbjct: 720 TNRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSAS 779

Query: 454 ETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDACKVVSTMPMK 499
           E+L    +   KI L  + +     V++  K G I +A  +   M ++
Sbjct: 780 ESLHGYAV---KIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVR 824


>gi|297746037|emb|CBI16093.3| unnamed protein product [Vitis vinifera]
          Length = 702

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 190/587 (32%), Positives = 311/587 (52%), Gaps = 72/587 (12%)

Query: 46  FGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT 105
            G + HC  +K G  +D  +  SLI MYAK  + +SA +++D+M   D  + N +I+ + 
Sbjct: 131 LGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSLDAATCNCLISAYA 190

Query: 106 QNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSV 165
           +NGF+V++ ++F ++   G        + ++++C  I  ++ G+Q+HA V V   +    
Sbjct: 191 RNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHV-VKMQYLSET 249

Query: 166 FVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNY-----------DT 214
            V  ALL LYSKC     A  VFE +  RN +SWTA I+G     ++           ++
Sbjct: 250 AVGNALLTLYSKCGMMEEAEIVFENLGQRNIISWTASINGFYQHGDFKKALKQFSMMRES 309

Query: 215 GID---------------------------------------LFRAMQREGVKPT----- 230
           GI+                                       L R M  EG KPT     
Sbjct: 310 GIEPNEFTFSIVLASCGCDLGKWMKQRTSSNRWGGQHLMSIFLLRKMIEEGNKPTSLRPN 369

Query: 231 RVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIF 290
           +  L  +L AC  L D R G+ +H       F+ D ++ +AL++MY +C       R+  
Sbjct: 370 QFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVF- 428

Query: 291 ERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLS 350
               + +VV W+++I G+SQ  D             +   P+SVT+ ++L +CT  + L 
Sbjct: 429 --DWIPNVVSWNTLIAGFSQMLD-------------QGFCPSSVTISSLLPACTNVANLR 473

Query: 351 HGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYG 410
           HG  +H Y M  G+  DV + +AL++MY+KCG I+ +  +F  M  R+ V+W +LI GY 
Sbjct: 474 HGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYA 533

Query: 411 FHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAI 470
            HGY  EA++LF +M+ES  + D +T  A+L+AC+HAG+V+  E+LF  + ++ +I   +
Sbjct: 534 NHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFRKMQEKYRIEPRL 593

Query: 471 EHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE 530
           EHYAC VDLLG++GK+ +A  ++  MP++P   +  +L+ ACR HG +E+AE+ A  L E
Sbjct: 594 EHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIELAEVAAEHLFE 653

Query: 531 AEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            EPE+  +  LLS + +++G W  A ++ ++M+ +   K  G S IE
Sbjct: 654 LEPESPGSSLLLSNLYADAGRWGNAAKMKKMMKQRKFGKFPGCSWIE 700



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 120/504 (23%), Positives = 221/504 (43%), Gaps = 53/504 (10%)

Query: 106 QNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSV 165
           + GF+ R+ E     +  GF  +  + + + S C + G +ELGR+ H  V+  G      
Sbjct: 92  EAGFFTRN-ETPHVEFGGGFPHRQYVFSAL-SFCGREGCVELGRRWHCFVVKIG-LGSDE 148

Query: 166 FVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
           FV T+L+D+Y+KC     A+RV+++M   +  +   +IS    +  +     +F  +   
Sbjct: 149 FVCTSLIDMYAKCGEVDSAVRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNM 208

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
           G +P   T + +L  C  +  ++ GK +H +     +  +  +  AL+ +Y +C   +  
Sbjct: 209 GTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCG-MMEE 267

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC-- 343
           A I+FE    ++++ W++ I G+ Q GD  +A+K FS MR   IEPN  T   +L+SC  
Sbjct: 268 AEIVFENLGQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGC 327

Query: 344 -----TRQSFLSHGLGVHCYIMKAGLNFDVSIGN----------ALMNMYSKCGSITSSH 388
                 +Q   S+  G    +    L   +  GN           L ++   CG ++   
Sbjct: 328 DLGKWMKQRTSSNRWGGQHLMSIFLLRKMIEEGNKPTSLRPNQFVLPSILKACGHLSDRR 387

Query: 389 Q-------IFNEMAARDFVSWTTLISGYGFHGYGEEALQL----------------FLEM 425
                   I       D    + LI  Y   G+ E+A ++                F +M
Sbjct: 388 TGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIPNVVSWNTLIAGFSQM 447

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVM---KEKKIALAIEHYACYVDLLGK 482
            + G  P ++T+ ++L AC +   ++  + +    M    EK + +     +  VD+  K
Sbjct: 448 LDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVR----SALVDMYAK 503

Query: 483 SGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPE-NAANYTL 541
            G I +A  +   MP + +T   +SL+     HG    A  L +Q+ E++ + +   +T 
Sbjct: 504 CGYISEAKILFYMMPER-NTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTA 562

Query: 542 LSMVCSESGNWLGAEEVWRVMRAK 565
           +   CS +G     E ++R M+ K
Sbjct: 563 VLNACSHAGMVELGESLFRKMQEK 586



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 118/223 (52%), Gaps = 17/223 (7%)

Query: 20  PSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKP 79
           P+ L  N  +LPS++KAC +  + +  G  +H   LK+  ++D  I ++LI MY+K    
Sbjct: 363 PTSLRPNQFVLPSILKACGHL-SDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHV 421

Query: 80  ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLC 139
           E A ++FD +P  + +SWN++I  F+Q             M   GF   +  ++ ++  C
Sbjct: 422 EKACRVFDWIP--NVVSWNTLIAGFSQ-------------MLDQGFCPSSVTISSLLPAC 466

Query: 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSW 199
           + +  L  G++IH   +V G  E  V+V +AL+D+Y+KC +   A  +F  M  RN V+W
Sbjct: 467 TNVANLRHGKEIHGYAMVIG-VEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTW 525

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
            ++I G  +    +  I+LF  M+    K   +T T VL AC+
Sbjct: 526 NSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACS 568



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 111/217 (51%), Gaps = 14/217 (6%)

Query: 283 LHPARIIFERTKVKDVVIWSSIIRGYSQ--SGDLSEAMK---LFSRMRLERIE-----PN 332
           L+ A I+FE+T  +   I  SI   +    + D  E +K    F+R     +E     P+
Sbjct: 56  LNNACILFEKTPKR---IGVSITESHRSGCTDDPEEGVKEAGFFTRNETPHVEFGGGFPH 112

Query: 333 SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFN 392
              + + LS C R+  +  G   HC+++K GL  D  +  +L++MY+KCG + S+ ++++
Sbjct: 113 RQYVFSALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYD 172

Query: 393 EMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKE 452
           +M + D  +   LIS Y  +G+  +A Q+F+++   G  P+  T   +L+ C     ++E
Sbjct: 173 KMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQE 232

Query: 453 AETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
            + L  +V+K + ++      A  + L  K G +E+A
Sbjct: 233 GKQLHAHVVKMQYLSETAVGNA-LLTLYSKCGMMEEA 268


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 177/595 (29%), Positives = 308/595 (51%), Gaps = 48/595 (8%)

Query: 23  LYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESA 82
           + S+ A++ ++IK     ++      QLH   +++ S +    S  +IS+Y        A
Sbjct: 1   MSSSKALIKTLIKNPTRIKSKSQ-AKQLHAQFIRTQSLSHTSAS-IVISIYTNLKLLHEA 58

Query: 83  YQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQI 142
             LF  +     ++W S+I CFT    + ++L  F EM   G      +   ++  C+ +
Sbjct: 59  LLLFKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMM 118

Query: 143 GELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL----------------- 185
            +L  G  +H  ++  G  +  ++   AL+++Y+K    L+ +                 
Sbjct: 119 MDLRFGESVHGFIVRLG-MDCDLYTGNALMNMYAK----LLGMGSKISVGNVFDEMPQRT 173

Query: 186 -----------------------RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM 222
                                  RVFE M  ++ VS+  +I+G   S  Y+  + + R M
Sbjct: 174 SNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREM 233

Query: 223 QREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEA 282
               +KP   TL+ VL   +E  D+  GK IHGY    G D D ++ ++L+ MY +    
Sbjct: 234 GTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARI 293

Query: 283 LHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSS 342
               R+ F R   +D + W+S++ GY Q+G  +EA++LF +M   +++P +V   +++ +
Sbjct: 294 EDSERV-FSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPA 352

Query: 343 CTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSW 402
           C   + L  G  +H Y+++ G   ++ I +AL++MYSKCG+I ++ +IF+ M   D VSW
Sbjct: 353 CAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSW 412

Query: 403 TTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462
           T +I G+  HG+G EA+ LF EM+  GV+P+ +  +A+L+AC+H GLV EA   FN++ K
Sbjct: 413 TAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTK 472

Query: 463 EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAE 522
              +   +EHYA   DLLG++GK+E+A   +S M ++P+  + S+L+S+C +H  LE+AE
Sbjct: 473 VYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAE 532

Query: 523 MLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +A ++   + EN   Y L+  + + +G W    ++   MR KGL K    S IE
Sbjct: 533 KVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIE 587



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 132/467 (28%), Positives = 229/467 (49%), Gaps = 45/467 (9%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           E+  SG   +  + PSV+K+C      + FG  +H   ++ G D D    N+L++MYAK 
Sbjct: 95  EMRASGRCPDHNVFPSVLKSCTMMMDLR-FGESVHGFIVRLGMDCDLYTGNALMNMYAKL 153

Query: 77  ---SKPESAYQLFDEMPYR---------------------------------DTISWNSI 100
                  S   +FDEMP R                                 D +S+N+I
Sbjct: 154 LGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTI 213

Query: 101 INCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGS 160
           I  + Q+G Y  +L M REM        +  L+ ++ + S+  ++  G++IH  VI  G 
Sbjct: 214 IAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKG- 272

Query: 161 FELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFR 220
            +  V++ ++L+D+Y+K      + RVF ++  R+ +SW ++++G + +  Y+  + LFR
Sbjct: 273 IDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFR 332

Query: 221 AMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECT 280
            M    VKP  V  + V+ ACA L  L  GK +HGY    GF  +  +++AL+ MY +C 
Sbjct: 333 QMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCG 392

Query: 281 EALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAIL 340
             +  AR IF+R  V D V W++II G++  G   EA+ LF  M+ + ++PN V  +A+L
Sbjct: 393 N-IKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVL 451

Query: 341 SSCTRQSFLSHGLGVHCYIMKA-GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDF 399
           ++C+    +    G    + K  GLN ++    A+ ++  + G +  ++   ++M     
Sbjct: 452 TACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPT 511

Query: 400 VS-WTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
            S W+TL+S    H    + L+L  ++ E     D+  + A +  CN
Sbjct: 512 GSVWSTLLSSCSVH----KNLELAEKVAEKIFTVDSENMGAYVLMCN 554



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 168/339 (49%), Gaps = 39/339 (11%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACA-YAQTHQHFGLQLHCTALKSGSDADPVI 65
           YE  L + + E+  + L  ++  L SV+   + Y    +  G ++H   ++ G D+D  I
Sbjct: 223 YEDALRMVR-EMGTTDLKPDSFTLSSVLPIFSEYVDVIK--GKEIHGYVIRKGIDSDVYI 279

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
            +SL+ MYAK ++ E + ++F  +  RD ISWNS++  + QNG Y  +L +FR+M     
Sbjct: 280 GSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKV 339

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
              A   + +I  C+ +  L LG+Q+H  V+  G F  ++F+++AL+D+YSKC +   A 
Sbjct: 340 KPGAVAFSSVIPACAHLATLHLGKQLHGYVL-RGGFGSNIFIASALVDMYSKCGNIKAAR 398

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
           ++F++M + +EVSWTA+I G     +    + LF  M+R+GVKP +V    VL AC+ + 
Sbjct: 399 KIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHV- 457

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
               G     + Y       + L+  L H                          ++++ 
Sbjct: 458 ----GLVDEAWGYFNSMTKVYGLNQELEH--------------------------YAAVA 487

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
               ++G L EA    S+M    +EP       +LSSC+
Sbjct: 488 DLLGRAGKLEEAYNFISKM---CVEPTGSVWSTLLSSCS 523



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 99/210 (47%), Gaps = 7/210 (3%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           Y + L L++Q +  + +        SVI ACA+  T  H G QLH   L+ G  ++  I+
Sbjct: 324 YNEALRLFRQ-MVTAKVKPGAVAFSSVIPACAHLAT-LHLGKQLHGYVLRGGFGSNIFIA 381

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           ++L+ MY+K    ++A ++FD M   D +SW +II     +G    ++ +F EM   G  
Sbjct: 382 SALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVK 441

Query: 127 LKAELLAGIISLCSQIGEL-ELGRQIHALVIVDG-SFELSVFVSTALLDLYSKCHHWLIA 184
                   +++ CS +G + E     +++  V G + EL  + + A  DL  +      A
Sbjct: 442 PNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVA--DLLGRAGKLEEA 499

Query: 185 LRVFEQMVIRNEVS-WTAMISGCIDSQNYD 213
                +M +    S W+ ++S C   +N +
Sbjct: 500 YNFISKMCVEPTGSVWSTLLSSCSVHKNLE 529


>gi|255572826|ref|XP_002527345.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533264|gb|EEF35017.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 687

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 171/539 (31%), Positives = 303/539 (56%), Gaps = 15/539 (2%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           +H   +K+G+  D  +  SL+++YAK     +A ++FD +  R+ ++W +++  + QN  
Sbjct: 96  IHAHIIKTGTHKDLAVMTSLVNVYAKCGAMGNARKIFDSLHRRNVVAWTALMTGYVQNSQ 155

Query: 110 YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVST 169
              ++++F++M   G +     L   ++ CS I  ++LG+Q+HA VI     +    +  
Sbjct: 156 PNIAIDVFQDMLESGTLPSNYTLGIALNACSAINSIKLGKQLHAFVI-KYKLDYDPSIGN 214

Query: 170 ALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKP 229
           AL  LYSK      ++ VF+ +  +N +SWTA+IS C ++     G+  F  M  E +KP
Sbjct: 215 ALCSLYSKLGSLDSSINVFQSIGEKNVISWTAVISACGENGKAAMGLRFFNEMLLEDIKP 274

Query: 230 TRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARII 289
              TLT VL  C     L  G+ +H  +   G+ ++  ++ ++M++Y +C   +  A+I+
Sbjct: 275 NEFTLTTVLSLCCVTLALVLGRLVHSLSIKLGYQYNLRITNSIMYLYLKCGH-MDEAQIL 333

Query: 290 FERTKVKDVVIWSSIIRGYSQSGDLS-----------EAMKLFSRMRLERIEPNSVTLLA 338
           F +    ++V W+++I G++Q+ DL+           EA+ +F  +     +P+  TL +
Sbjct: 334 FHKMGSTNLVTWNAMISGHAQAMDLAKDDFSAQRSGIEALSIFLELNRTGKKPDLFTLSS 393

Query: 339 ILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARD 398
           +L+ C+R S L  G  +H   +K+G   DV +G AL+NMYSKCGSI  + + F EM+ R 
Sbjct: 394 VLTVCSRLSALGQGEQLHAQTIKSGYLSDVVVGTALVNMYSKCGSIGKASKAFVEMSTRT 453

Query: 399 FVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFN 458
            +SWTT+I+G   HG+ E+ALQLF +M+ +GV P+ IT + +L+AC H+G+V EA   F 
Sbjct: 454 LISWTTMITGLAQHGHSEQALQLFEDMRLAGVRPNQITFVGVLAACCHSGMVDEALGYFE 513

Query: 459 NVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRL 518
            + KE +I   ++HY C + +  K  ++++A  +++ M  +PS  I S L++ CR  G+ 
Sbjct: 514 MMQKEYRIKPVMDHYGCLIAMFVKLRRLDEAFDIINKMDFEPSEFIWSILIAGCRNLGKQ 573

Query: 519 EVAEMLAHQLIEAEPENAANY-TLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
           E+    A QL++ + ++   Y TLL+M  S +  W     V ++M+ + L K   +S I
Sbjct: 574 ELGFYAAEQLLKLKLKDTETYVTLLNMYIS-AKRWQDVSRVRKLMKEEKLGKFNDWSWI 631



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 127/438 (28%), Positives = 214/438 (48%), Gaps = 29/438 (6%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           Q++  SG   +   L   + AC+ A      G QLH   +K   D DP I N+L S+Y+K
Sbjct: 164 QDMLESGTLPSNYTLGIALNACS-AINSIKLGKQLHAFVIKYKLDYDPSIGNALCSLYSK 222

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
               +S+  +F  +  ++ ISW ++I+   +NG     L  F EM L         L  +
Sbjct: 223 LGSLDSSINVFQSIGEKNVISWTAVISACGENGKAAMGLRFFNEMLLEDIKPNEFTLTTV 282

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           +SLC     L LGR +H+L I  G ++ ++ ++ +++ LY KC H   A  +F +M   N
Sbjct: 283 LSLCCVTLALVLGRLVHSLSIKLG-YQYNLRITNSIMYLYLKCGHMDEAQILFHKMGSTN 341

Query: 196 EVSWTAMISG---CIDSQNYD-----TGID---LFRAMQREGVKPTRVTLTIVLLACAEL 244
            V+W AMISG    +D    D     +GI+   +F  + R G KP   TL+ VL  C+ L
Sbjct: 342 LVTWNAMISGHAQAMDLAKDDFSAQRSGIEALSIFLELNRTGKKPDLFTLSSVLTVCSRL 401

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
             L  G+ +H      G+  D  +  AL++MY +C  ++  A   F     + ++ W+++
Sbjct: 402 SALGQGEQLHAQTIKSGYLSDVVVGTALVNMYSKCG-SIGKASKAFVEMSTRTLISWTTM 460

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
           I G +Q G   +A++LF  MRL  + PN +T + +L++C     +   LG +  +M+   
Sbjct: 461 ITGLAQHGHSEQALQLFEDMRLAGVRPNQITFVGVLAACCHSGMVDEALG-YFEMMQKEY 519

Query: 365 NFDVSIGN--ALMNMYSKCGSITSSHQIFNEM--AARDFVSWTTLISG--------YGFH 412
                + +   L+ M+ K   +  +  I N+M     +F+ W+ LI+G         GF+
Sbjct: 520 RIKPVMDHYGCLIAMFVKLRRLDEAFDIINKMDFEPSEFI-WSILIAGCRNLGKQELGFY 578

Query: 413 GYGEEALQLFLEMQESGV 430
              E+ L+L L+  E+ V
Sbjct: 579 A-AEQLLKLKLKDTETYV 595



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 123/223 (55%), Gaps = 8/223 (3%)

Query: 327 ERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITS 386
           ++IEP+    L +L  CT+++ +S    +H +I+K G + D+++  +L+N+Y+KCG++ +
Sbjct: 70  KKIEPS--YYLPLLQECTKKNSVSEAQVIHAHIIKTGTHKDLAVMTSLVNVYAKCGAMGN 127

Query: 387 SHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH 446
           + +IF+ +  R+ V+WT L++GY  +     A+ +F +M ESG  P   T+   L+AC+ 
Sbjct: 128 ARKIFDSLHRRNVVAWTALMTGYVQNSQPNIAIDVFQDMLESGTLPSNYTLGIALNACSA 187

Query: 447 AGLVKEAETLFNNVMKEK-KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRIL 505
              +K  + L   V+K K     +I +  C   L  K G ++ +  V  ++  K +    
Sbjct: 188 INSIKLGKQLHAFVIKYKLDYDPSIGNALC--SLYSKLGSLDSSINVFQSIGEK-NVISW 244

Query: 506 SSLVSACRIHGRLEVAEMLAHQLI--EAEPENAANYTLLSMVC 546
           ++++SAC  +G+  +     ++++  + +P      T+LS+ C
Sbjct: 245 TAVISACGENGKAAMGLRFFNEMLLEDIKPNEFTLTTVLSLCC 287


>gi|357504423|ref|XP_003622500.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497515|gb|AES78718.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 655

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 178/539 (33%), Positives = 291/539 (53%), Gaps = 10/539 (1%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G QLH   +K G      + N ++S+Y K  + E A +LF+E+P R+ +SWN +I     
Sbjct: 79  GKQLHAHLIKFGFCQVLSLQNQILSVYLKCQEAEDAKKLFEELPVRNVVSWNIMIRASVG 138

Query: 107 NGFYVRSLEM------FREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGS 160
                 S  M      FR M L   V       G+I LC+Q  ++E+G Q+H   +  G 
Sbjct: 139 RNDENESSGMRLCFSYFRRMLLEMMVPDHITFNGLICLCTQFNDIEMGVQLHCFTVKVG- 197

Query: 161 FELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFR 220
           F+L  FV  AL+ LY+KC     A RVF  +  R+ V W  M+S  + +   +    +F 
Sbjct: 198 FDLDCFVGCALVGLYAKCGFVENARRVFCDVSCRDLVMWNVMVSCYVFNSLPEEAFRVFN 257

Query: 221 AMQREGVKPTRVTLTIVLLACAE--LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCE 278
           +M+ + V     T + +L   ++  L     GK +H       FD D  +++AL++MY +
Sbjct: 258 SMRLDVVNGDEFTFSSLLSVISDDALEYYDFGKQVHSLVLRQSFDSDVLVASALINMYAK 317

Query: 279 CTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLA 338
            +E +  AR +F+   +++VV W+++I G+   GD +E MKL   M  E   P+ +T+ +
Sbjct: 318 -SENIIDARRVFDEMSIRNVVAWNTMIVGFGNHGDGNEVMKLVKEMLREGFLPDELTISS 376

Query: 339 ILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARD 398
           I+SSC   S ++  L VH + +K      +S+ N+L++ YSKCGSITS+ + F   +  D
Sbjct: 377 IISSCGYASAITETLQVHAFAVKLSCQDFLSVANSLISAYSKCGSITSAFKCFELTSQPD 436

Query: 399 FVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFN 458
            V+WT+LI  Y FHG  E++ ++F +M   G++PD I  L +LSAC H GLV +    F 
Sbjct: 437 LVTWTSLIYAYAFHGLAEKSTEMFEKMLSYGIKPDRIAFLGVLSACAHCGLVTKGLHYFK 496

Query: 459 NVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRL 518
            +    +I    EHY C VDLLG+ G I +A +++ +MP++  +  L + + +C++H  +
Sbjct: 497 LMTNAYQIVPDSEHYTCLVDLLGRYGLINEAFEILRSMPIEVDSDTLGAFIGSCKLHSNM 556

Query: 519 EVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           E+A++ A +L   EPE + NY ++S + +   +W   E + + M  K  +K  G S IE
Sbjct: 557 ELAKLAAEKLFLIEPEKSVNYAVMSNIFASQKHWYDVERIRKTMEDKRDAKVPGCSWIE 615



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 136/264 (51%), Gaps = 16/264 (6%)

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L  GK +H +    GF     L   ++ +Y +C EA   A+ +FE   V++VV W+ +IR
Sbjct: 76  LPEGKQLHAHLIKFGFCQVLSLQNQILSVYLKCQEA-EDAKKLFEELPVRNVVSWNIMIR 134

Query: 307 GYSQSGDLSEA--MKL----FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
                 D +E+  M+L    F RM LE + P+ +T   ++  CT+ + +  G+ +HC+ +
Sbjct: 135 ASVGRNDENESSGMRLCFSYFRRMLLEMMVPDHITFNGLICLCTQFNDIEMGVQLHCFTV 194

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
           K G + D  +G AL+ +Y+KCG + ++ ++F +++ RD V W  ++S Y F+   EEA +
Sbjct: 195 KVGFDLDCFVGCALVGLYAKCGFVENARRVFCDVSCRDLVMWNVMVSCYVFNSLPEEAFR 254

Query: 421 LFLEMQESGVEPDAITVLAILS-----ACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC 475
           +F  M+   V  D  T  ++LS     A  +    K+  +L      +  + +A    + 
Sbjct: 255 VFNSMRLDVVNGDEFTFSSLLSVISDDALEYYDFGKQVHSLVLRQSFDSDVLVA----SA 310

Query: 476 YVDLLGKSGKIEDACKVVSTMPMK 499
            +++  KS  I DA +V   M ++
Sbjct: 311 LINMYAKSENIIDARRVFDEMSIR 334



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 140/309 (45%), Gaps = 37/309 (11%)

Query: 40  AQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNS 99
           A  +  FG Q+H   L+   D+D +++++LI+MYAK      A ++FDEM  R+ ++WN+
Sbjct: 282 ALEYYDFGKQVHSLVLRQSFDSDVLVASALINMYAKSENIIDARRVFDEMSIRNVVAWNT 341

Query: 100 IINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDG 159
           +I  F  +G     +++ +EM   GF+     ++ IIS C     +    Q+HA   V  
Sbjct: 342 MIVGFGNHGDGNEVMKLVKEMLREGFLPDELTISSIISSCGYASAITETLQVHAFA-VKL 400

Query: 160 SFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLF 219
           S +  + V+ +L+  YSKC     A + FE     + V+WT++I         +   ++F
Sbjct: 401 SCQDFLSVANSLISAYSKCGSITSAFKCFELTSQPDLVTWTSLIYAYAFHGLAEKSTEMF 460

Query: 220 RAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCEC 279
             M   G+KP R+    VL ACA                 CG                  
Sbjct: 461 EKMLSYGIKPDRIAFLGVLSACAH----------------CGL----------------V 488

Query: 280 TEALHPARIIFERTK-VKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLA 338
           T+ LH  +++    + V D   ++ ++    + G ++EA ++   M    IE +S TL A
Sbjct: 489 TKGLHYFKLMTNAYQIVPDSEHYTCLVDLLGRYGLINEAFEILRSM---PIEVDSDTLGA 545

Query: 339 ILSSCTRQS 347
            + SC   S
Sbjct: 546 FIGSCKLHS 554



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 77/173 (44%), Gaps = 13/173 (7%)

Query: 330 EPNSVTLLA--ILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
           +PN+V L     L    ++ +L  G  +H +++K G    +S+ N ++++Y KC     +
Sbjct: 55  DPNTVHLFCSNALKISAKKGYLPEGKQLHAHLIKFGFCQVLSLQNQILSVYLKCQEAEDA 114

Query: 388 HQIFNEMAARDFVSWTTLI-SGYGFHGYGEEA-----LQLFLEMQESGVEPDAITVLAIL 441
            ++F E+  R+ VSW  +I +  G +   E +        F  M    + PD IT   ++
Sbjct: 115 KKLFEELPVRNVVSWNIMIRASVGRNDENESSGMRLCFSYFRRMLLEMMVPDHITFNGLI 174

Query: 442 SACNHAGLVKEAETLFNNVMKEKKIALAIEHYA--CYVDLLGKSGKIEDACKV 492
             C     ++    L    +   K+   ++ +     V L  K G +E+A +V
Sbjct: 175 CLCTQFNDIEMGVQLHCFTV---KVGFDLDCFVGCALVGLYAKCGFVENARRV 224


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 193/569 (33%), Positives = 311/569 (54%), Gaps = 37/569 (6%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK--FSK 78
           SGLY +  + PSV+KACA      + G  LH   ++ G D D    N+L++MY+K  F K
Sbjct: 102 SGLYPDHNVFPSVLKACAMLMD-LNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLK 160

Query: 79  PES-----AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC-GFVLKAELL 132
                   A Q+ DEM  R T S  +        G  V  +E F     C     +A++L
Sbjct: 161 KSGRQRLGASQVLDEMTER-TRSVRTASVLVGNQGRKVSDIEAFNYDVSCRSREFEAQVL 219

Query: 133 AGIISLCSQIGELE---LGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
                  S+  E+E   LG+QI      D S  +SV       D   K         +FE
Sbjct: 220 EIDYKPRSEYREMEACNLGQQIK-----DISHSMSV-------DSVRK---------IFE 258

Query: 190 QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
            M  ++ VSW  +I+G   +  Y   + + R M    +KP   TL+ VL   AE  D+  
Sbjct: 259 MMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVDISK 318

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
           GK IHG +   G D + +++++L+ MY +CT  +   R+ F     +D + W+SII G  
Sbjct: 319 GKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRV-FTLLTERDGISWNSIIAGCV 377

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
           Q+G   E +K F +M + +I+P S +  +I+ +C   + L  G  +H YI + G + ++ 
Sbjct: 378 QNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIF 437

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
           I ++L++MY+KCG+I ++ QIF+ M  RD VSWT +I G   HG+  +A++LF +M+  G
Sbjct: 438 IASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMKTEG 497

Query: 430 VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
           +EP+ +  +A+L+AC+HAGLV EA   FN++  +  IA  +EHYA   DLLG++G++E+A
Sbjct: 498 IEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRAGRLEEA 557

Query: 490 CKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSES 549
              +  MP+ P+  + ++L+SACR+H  +++AE +A++++E +P+N   Y LL+ + S +
Sbjct: 558 YDFICGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRILEVDPKNTGAYILLANIYSAA 617

Query: 550 GNWLGAEEVWRV-MRAKGLSKSYGFSRIE 577
             W  A + WR  +R  G+ K+   S IE
Sbjct: 618 RRWKEAAK-WRASLRRTGIRKTPACSWIE 645



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 130/552 (23%), Positives = 248/552 (44%), Gaps = 68/552 (12%)

Query: 31  PSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMP 90
           P  IK+ + AQ       QLH   LK  + +     + L+S+Y+  +    + +LF+ + 
Sbjct: 18  PLSIKSRSQAQ-------QLHAQVLKFQASSL-CNLSLLLSIYSHINLLHDSLRLFNTLH 69

Query: 91  YRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQ 150
           +   ++W S+I C+T +G   +SL  F  M   G      +   ++  C+ + +L LG  
Sbjct: 70  FPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLMDLNLGES 129

Query: 151 IHALVIVDGSFELSVFVSTALLDLYSKC-------HHWLIALRVFEQMVIRNEVSWTAMI 203
           +H  +I  G  +  ++   AL+++YSK           L A +V ++M  R     TA +
Sbjct: 130 LHGYIIRVG-LDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTERTRSVRTASV 188

Query: 204 --------SGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN---GKA 252
                      I++ NYD      R+ + E        L I     +E R++     G+ 
Sbjct: 189 LVGNQGRKVSDIEAFNYDVSC---RSREFEA-----QVLEIDYKPRSEYREMEACNLGQQ 240

Query: 253 IHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSG 312
           I         D  H +S             +   R IFE    KD+V W++II G +++G
Sbjct: 241 IK--------DISHSMS-------------VDSVRKIFEMMPEKDLVSWNTIIAGNARNG 279

Query: 313 DLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN 372
              E + +   M    ++P+S TL ++L        +S G  +H   ++ GL+ +V + +
Sbjct: 280 LYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVAS 339

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
           +L++MY+KC  +  S+++F  +  RD +SW ++I+G   +G  +E L+ F +M  + ++P
Sbjct: 340 SLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKP 399

Query: 433 DAITVLAILSACNHAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLLGKSGKIEDA 489
            + +  +I+ AC H   +   + L   + +   ++ I +A    +  VD+  K G I  A
Sbjct: 400 KSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIA----SSLVDMYAKCGNIRTA 455

Query: 490 CKVVSTMPMKPSTRILSSLVSACRIHGR-LEVAEMLAHQLIEAEPENAANYTLLSMVCSE 548
            ++   M ++      ++++  C +HG  L+  E+      E    N   +  +   CS 
Sbjct: 456 RQIFDRMRLRDMVS-WTAMIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSH 514

Query: 549 SGNWLGAEEVWR 560
           +G     +E W+
Sbjct: 515 AGL---VDEAWK 523


>gi|147779768|emb|CAN71727.1| hypothetical protein VITISV_003014 [Vitis vinifera]
          Length = 1167

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 179/530 (33%), Positives = 300/530 (56%), Gaps = 9/530 (1%)

Query: 54   ALKSGSDADPV--ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYV 111
            A+K+G + D    ISN+L++ Y+   K  S+++LF +MP R+ ISWN++I+    NG   
Sbjct: 641  AIKTGKEFDSXLNISNALLAFYSDCGKLSSSFKLFQKMPLRNAISWNTLISGCVHNGDTK 700

Query: 112  RSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTAL 171
            +++ +  +M      L    L  II +C     L  G  +H   I  G F   V +  AL
Sbjct: 701  KAVALLHKMQQEKMELDLVTLISIIPICRVXENLIQGMTLHGYAIKTG-FACDVSLVNAL 759

Query: 172  LDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTR 231
            + +Y  C        +FE M  R+ VSW A+I+G       +  +  F  M  EG KP  
Sbjct: 760  ISMYFNCGDINAGKFLFEVMPWRSIVSWNALITGYRFHYLQNEVMASFCQMIXEGQKPNY 819

Query: 232  VTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFE 291
            VTL  +L +C  L     GK+IH +A   G   +  +  +L+ MY    E ++    +FE
Sbjct: 820  VTLLNLLPSCXTLL---QGKSIHAFAVRTGVIVETPIITSLISMYAR-FENINSFIFLFE 875

Query: 292  RTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSH 351
                +D+ +W++I+  Y Q+ +  E++  F  +   R+EP+ +T L+++S+C + S L+ 
Sbjct: 876  MGGKEDIALWNAIMSVYVQTKNAKESVTFFCELLHARVEPDYITFLSLISACVQLSSLNL 935

Query: 352  GLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGF 411
               V  Y+++ G +  + I NAL++++++CG+I+ + +IF  ++++D VSW+T+I+GYG 
Sbjct: 936  SNSVMAYVIQKGFDKHIVISNALIDLFARCGNISIAKKIFEGLSSKDAVSWSTMINGYGL 995

Query: 412  HGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIE 471
            HG  E AL L  +M+ SG++PD IT  ++LSAC+H G + +   +FN+ M E+ +   +E
Sbjct: 996  HGDSEAALALLSQMRLSGMKPDGITYASVLSACSHGGFIDQGWMIFNS-MVEEGVPRRME 1054

Query: 472  HYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA 531
            HYAC VDLLG++G++ +A   V  +P KPS  +L SL+ AC IHG +++ E +   L E 
Sbjct: 1055 HYACMVDLLGRTGQLNEAYDFVEKLPCKPSVSLLESLLXACIIHGNVKLGEKICSLLFEL 1114

Query: 532  EPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE-NEY 580
            +P+N+ +Y +L  + + +G W+ A  V   M  + L K  GFS +E N Y
Sbjct: 1115 DPKNSGSYVMLYNIYAAAGRWMDANRVRSDMEERQLRKIPGFSLVEGNRY 1164



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 132/493 (26%), Positives = 222/493 (45%), Gaps = 73/493 (14%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G  S+    P VIKAC+ A         +HC  L++  + + VI  +L+  YAK  +   
Sbjct: 340 GCPSDDFTFPFVIKACS-ALGAVWIAEGVHCIVLRTAFEENLVIQTALVDFYAKTGRMVK 398

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A  + D++   D ++WN++I+ ++ NGF     E+ R++   G        A II LC++
Sbjct: 399 ARLVLDKISQPDLVTWNALISGYSLNGFDKEVFEVLRQILEMGLKPNVSTFASIIPLCTR 458

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
           +  L++G+ IH  V+  G F    F++ AL+ +Y+   +  IA  +F+    +N V W +
Sbjct: 459 MKCLDIGKSIHGFVVKSG-FSSDEFLTPALISMYAGGGNLFIARDLFDSAAEKNVVIWNS 517

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           MIS    +Q       +F+ M +  ++P  VT   ++  C    +   GK++H +     
Sbjct: 518 MISAYAQNQKSSEAFKMFQQMLKANMQPNVVTFVSIIPCCENSANFWXGKSLHAHVMKYR 577

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIF----ERTKVKDVVI-------------W--- 301
            D    ++ AL+ MY +  +  + A  IF     +T  +D +I             W   
Sbjct: 578 LDSQLSVATALLSMYAKLGDX-NSAXFIFYQMPRKTSYRDSMISGYGIMSMGRPFFWVRL 636

Query: 302 -------------------SSIIRGYSQSGDLSEAMKLFSRMRL---------------- 326
                              ++++  YS  G LS + KLF +M L                
Sbjct: 637 LMHLAIKTGKEFDSXLNISNALLAFYSDCGKLSSSFKLFQKMPLRNAISWNTLISGCVHN 696

Query: 327 ---------------ERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
                          E++E + VTL++I+  C     L  G+ +H Y +K G   DVS+ 
Sbjct: 697 GDTKKAVALLHKMQQEKMELDLVTLISIIPICRVXENLIQGMTLHGYAIKTGFACDVSLV 756

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
           NAL++MY  CG I +   +F  M  R  VSW  LI+GY FH    E +  F +M   G +
Sbjct: 757 NALISMYFNCGDINAGKFLFEVMPWRSIVSWNALITGYRFHYLQNEVMASFCQMIXEGQK 816

Query: 432 PDAITVLAILSAC 444
           P+ +T+L +L +C
Sbjct: 817 PNYVTLLNLLPSC 829



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 144/544 (26%), Positives = 247/544 (45%), Gaps = 56/544 (10%)

Query: 16   QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
            Q++  + +  N     S+I  C  +      G  LH   +K   D+   ++ +L+SMYAK
Sbjct: 536  QQMLKANMQPNVVTFVSIIPCCENSANFWX-GKSLHAHVMKYRLDSQLSVATALLSMYAK 594

Query: 76   FSKPESAYQLFDEMP----YRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAEL 131
                 SA  +F +MP    YRD++     I    +  F+VR L                 
Sbjct: 595  LGDXNSAXFIFYQMPRKTSYRDSMISGYGIMSMGRPFFWVRLL----------------- 637

Query: 132  LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM 191
                               +H  +     F+  + +S ALL  YS C     + ++F++M
Sbjct: 638  -------------------MHLAIKTGKEFDSXLNISNALLAFYSDCGKLSSSFKLFQKM 678

Query: 192  VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGK 251
             +RN +SW  +ISGC+ + +    + L   MQ+E ++   VTL  ++  C    +L  G 
Sbjct: 679  PLRNAISWNTLISGCVHNGDTKKAVALLHKMQQEKMELDLVTLISIIPICRVXENLIQGM 738

Query: 252  AIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQS 311
             +HGYA   GF  D  L  AL+ MY  C + ++  + +FE    + +V W+++I GY   
Sbjct: 739  TLHGYAIKTGFACDVSLVNALISMYFNCGD-INAGKFLFEVMPWRSIVSWNALITGYRFH 797

Query: 312  GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
               +E M  F +M  E  +PN VTLL +L SC     L  G  +H + ++ G+  +  I 
Sbjct: 798  YLQNEVMASFCQMIXEGQKPNYVTLLNLLPSCXT---LLQGKSIHAFAVRTGVIVETPII 854

Query: 372  NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
             +L++MY++  +I S   +F      D   W  ++S Y      +E++  F E+  + VE
Sbjct: 855  TSLISMYARFENINSFIFLFEMGGKEDIALWNAIMSVYVQTKNAKESVTFFCELLHARVE 914

Query: 432  PDAITVLAILSACNHAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLLGKSGKIED 488
            PD IT L+++SAC     +  + ++   V++   +K I ++       +DL  + G I  
Sbjct: 915  PDYITFLSLISACVQLSSLNLSNSVMAYVIQKGFDKHIVIS----NALIDLFARCGNISI 970

Query: 489  ACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQ--LIEAEPENAANYTLLSMVC 546
            A K+   +  K +    S++++   +HG  E A  L  Q  L   +P+     ++LS  C
Sbjct: 971  AKKIFEGLSSKDAVS-WSTMINGYGLHGDSEAALALLSQMRLSGMKPDGITYASVLS-AC 1028

Query: 547  SESG 550
            S  G
Sbjct: 1029 SHGG 1032



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/391 (25%), Positives = 180/391 (46%), Gaps = 18/391 (4%)

Query: 11   LHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLI 70
            LH  +QE     L +    L S+I  C   +     G+ LH  A+K+G   D  + N+LI
Sbjct: 706  LHKMQQEKMELDLVT----LISIIPICRVXENLIQ-GMTLHGYAIKTGFACDVSLVNALI 760

Query: 71   SMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT----QNGFYVRSLEMFREMYLCGFV 126
            SMY       +   LF+ MP+R  +SWN++I  +     QN       +M  E     +V
Sbjct: 761  SMYFNCGDINAGKFLFEVMPWRSIVSWNALITGYRFHYLQNEVMASFCQMIXEGQKPNYV 820

Query: 127  LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
                LL    +L         G+ IHA  +  G   +   + T+L+ +Y++  +    + 
Sbjct: 821  TLLNLLPSCXTLLQ-------GKSIHAFAVRTGVI-VETPIITSLISMYARFENINSFIF 872

Query: 187  VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
            +FE     +   W A++S  + ++N    +  F  +    V+P  +T   ++ AC +L  
Sbjct: 873  LFEMGGKEDIALWNAIMSVYVQTKNAKESVTFFCELLHARVEPDYITFLSLISACVQLSS 932

Query: 247  LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
            L    ++  Y    GFD    +S AL+ ++  C   +  A+ IFE    KD V WS++I 
Sbjct: 933  LNLSNSVMAYVIQKGFDKHIVISNALIDLFARCGN-ISIAKKIFEGLSSKDAVSWSTMIN 991

Query: 307  GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
            GY   GD   A+ L S+MRL  ++P+ +T  ++LS+C+   F+  G  +   +++ G+  
Sbjct: 992  GYGLHGDSEAALALLSQMRLSGMKPDGITYASVLSACSHGGFIDQGWMIFNSMVEEGVPR 1051

Query: 367  DVSIGNALMNMYSKCGSITSSHQIFNEMAAR 397
             +     ++++  + G +  ++    ++  +
Sbjct: 1052 RMEHYACMVDLLGRTGQLNEAYDFVEKLPCK 1082



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 142/281 (50%), Gaps = 8/281 (2%)

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
           G      T   V+ AC+ L  +   + +H       F+ +  +  AL+  Y + T  +  
Sbjct: 340 GCPSDDFTFPFVIKACSALGAVWIAEGVHCIVLRTAFEENLVIQTALVDFYAK-TGRMVK 398

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           AR++ ++    D+V W+++I GYS +G   E  ++  ++    ++PN  T  +I+  CTR
Sbjct: 399 ARLVLDKISQPDLVTWNALISGYSLNGFDKEVFEVLRQILEMGLKPNVSTFASIIPLCTR 458

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
              L  G  +H +++K+G + D  +  AL++MY+  G++  +  +F+  A ++ V W ++
Sbjct: 459 MKCLDIGKSIHGFVVKSGFSSDEFLTPALISMYAGGGNLFIARDLFDSAAEKNVVIWNSM 518

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK--- 462
           IS Y  +    EA ++F +M ++ ++P+ +T ++I+  C ++      ++L  +VMK   
Sbjct: 519 ISAYAQNQKSSEAFKMFQQMLKANMQPNVVTFVSIIPCCENSANFWXGKSLHAHVMKYRL 578

Query: 463 EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTR 503
           + ++++A    + Y  L    G    A  +   MP K S R
Sbjct: 579 DSQLSVATALLSMYAKL----GDXNSAXFIFYQMPRKTSYR 615


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 171/528 (32%), Positives = 288/528 (54%), Gaps = 2/528 (0%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           LH  A+K G D    + N+L+  Y K     +A ++F EM  +D +++N+++   ++ G 
Sbjct: 157 LHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGL 216

Query: 110 YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVST 169
           + ++L++F  M   G        + I+++ + +  L LG Q+HALV+   S  L+VFV+ 
Sbjct: 217 HTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSV-LNVFVNN 275

Query: 170 ALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKP 229
           +LLD YSKC       R+F++M  R+ VS+  +I+    +Q   T + LFR MQ+ G   
Sbjct: 276 SLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDR 335

Query: 230 TRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARII 289
             +    +L     L D+  GK IH      G   +  L  AL+ MY +C   L  A+  
Sbjct: 336 QVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCG-MLDAAKSN 394

Query: 290 FERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFL 349
           F     K  + W+++I GY Q+G   EA++LFS MR   + P+  T  +I+ + +  + +
Sbjct: 395 FSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMI 454

Query: 350 SHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGY 409
             G  +H Y++++G    V  G+ L++MY+KCG +  + + F+EM  R+ +SW  +IS Y
Sbjct: 455 GLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAY 514

Query: 410 GFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA 469
             +G  + A+++F  M   G  PD++T L++L+AC+H GL  E    F+ +  +  I+  
Sbjct: 515 AHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPW 574

Query: 470 IEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLI 529
            EHYAC +D LG+ G      K++  MP K    I +S++ +CRIHG  E+A + A +L 
Sbjct: 575 KEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLF 634

Query: 530 EAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
             EP +A  Y +LS + + +G W  A  V ++MR +G+ K  G+S +E
Sbjct: 635 GMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVE 682



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 118/422 (27%), Positives = 203/422 (48%), Gaps = 24/422 (5%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPY 91
           S I   A    H   G Q+H   L+S S  +  ++NSL+  Y+K    +   +LFDEMP 
Sbjct: 240 SSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPE 299

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQI 151
           RD +S+N II  +  N      L +FREM   GF  +    A ++S+   + ++ +G+QI
Sbjct: 300 RDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQI 359

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQN 211
           HA +++ G       +  AL+D+YSKC     A   F     ++ +SWTA+I+G + +  
Sbjct: 360 HAQLVLLG-LASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQ 418

Query: 212 YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAA 271
           ++  + LF  M+R G++P R T + ++ A + L  +  G+ +H Y    G+       + 
Sbjct: 419 HEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSV 478

Query: 272 LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP 331
           L+ MY +C   L  A   F+    ++ + W+++I  Y+  G+   A+K+F  M      P
Sbjct: 479 LVDMYAKCG-CLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNP 537

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN------ALMNMYSKCGSIT 385
           +SVT L++L++C+      +GL   C      +    SI         +++   + G  +
Sbjct: 538 DSVTFLSVLAACSH-----NGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFS 592

Query: 386 SSHQIFNEMAAR-DFVSWTTLISGYGFHGYGE----EALQLFLEMQESGVEPDAITVLAI 440
              ++  EM  + D + WT+++     HG  E     A +LF      G+EP   T   I
Sbjct: 593 QVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLF------GMEPTDATPYVI 646

Query: 441 LS 442
           LS
Sbjct: 647 LS 648



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 127/494 (25%), Positives = 235/494 (47%), Gaps = 18/494 (3%)

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           N ++S Y+      +A  LF   P+R+  +W  ++      G    +L +FR M   G +
Sbjct: 78  NLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVI 137

Query: 127 LKAELLAGIISL--CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
                +  +++L  C+          +H   I  G  +  VFV   LLD Y  C H L+A
Sbjct: 138 PDRVTVTTVLNLPGCTV-------PSLHPFAIKFG-LDTHVFVCNTLLDAY--CKHGLLA 187

Query: 185 L--RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
              RVF +M  ++ V++ AM+ GC     +   + LF AM+R G+  T  T + +L   A
Sbjct: 188 AARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAA 247

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
            +  L  G  +H          +  ++ +L+  Y +C + L   R +F+    +D V ++
Sbjct: 248 GMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKC-DCLDDMRRLFDEMPERDNVSYN 306

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
            II  Y+ +   +  ++LF  M+    +   +    +LS       +  G  +H  ++  
Sbjct: 307 VIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLL 366

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
           GL  +  +GNAL++MYSKCG + ++   F+  + +  +SWT LI+GY  +G  EEALQLF
Sbjct: 367 GLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLF 426

Query: 423 LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGK 482
            +M+ +G+ PD  T  +I+ A +   ++     L + +++    + ++   +  VD+  K
Sbjct: 427 SDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKS-SVFSGSVLVDMYAK 485

Query: 483 SGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLL 542
            G +++A +    MP + S    ++++SA   +G  + A  +   ++     N  + T L
Sbjct: 486 CGCLDEALRTFDEMPERNSIS-WNAVISAYAHYGEAKNAIKMFEGMLHCG-FNPDSVTFL 543

Query: 543 SMVCSESGNWLGAE 556
           S++ + S N L  E
Sbjct: 544 SVLAACSHNGLADE 557



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 105/379 (27%), Positives = 169/379 (44%), Gaps = 28/379 (7%)

Query: 119 EMYLCGF-VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSK 177
            M   GF VL   L  G+ SL S  G L   R      + D     ++F    +L  YS 
Sbjct: 33  RMVKTGFDVLTYRLNLGLRSLLSS-GHLHRAR-----AMFDQMPHKNIFSLNLILSAYSS 86

Query: 178 CHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIV 237
                 A  +F     RN  +WT M+     +      + LFRAM  EGV P RVT+T V
Sbjct: 87  SGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTV 146

Query: 238 --LLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV 295
             L  C          ++H +A   G D    +   L+  YC+    L  AR +F     
Sbjct: 147 LNLPGCTV-------PSLHPFAIKFGLDTHVFVCNTLLDAYCK-HGLLAAARRVFLEMHD 198

Query: 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV 355
           KD V +++++ G S+ G  ++A++LF+ MR   I     T  +IL+     + L  G  V
Sbjct: 199 KDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQV 258

Query: 356 HCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYG 415
           H  ++++    +V + N+L++ YSKC  +    ++F+EM  RD VS+  +I+ Y ++   
Sbjct: 259 HALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCA 318

Query: 416 EEALQLFLEMQESGVEPDAITVLAILSACN-----HAGLVKEAETLFNNVMKEKKIALAI 470
              L+LF EMQ+ G +   +    +LS        H G    A+ +   +  E  +  A+
Sbjct: 319 ATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNAL 378

Query: 471 EHYACYVDLLGKSGKIEDA 489
                 +D+  K G ++ A
Sbjct: 379 ------IDMYSKCGMLDAA 391


>gi|413938143|gb|AFW72694.1| hypothetical protein ZEAMMB73_533387 [Zea mays]
          Length = 663

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 181/574 (31%), Positives = 297/574 (51%), Gaps = 11/574 (1%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           F+ Q L LY Q  H   L    A      KACA  +  +H G  +H  AL +G  +D  +
Sbjct: 93  FHRQALALYSQMRHFDHLTFTFAA-----KACAGLRLRRH-GRAVHGRALAAGFGSDAYV 146

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
            N+++SMY +     +A  +F  +P R T+SWN++I    ++G   R+LE+F  M   G 
Sbjct: 147 QNAIVSMYMRCRDVAAAEAVFVALPSRTTVSWNTVITGCVKDGRAERALEVFETMVDRGV 206

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
            +    +  ++  C+Q  +L  GR +H L +V G  +  V V  AL+D+Y KC     A 
Sbjct: 207 CIDRASVVSVLPACAQARDLHTGRAVHRLAVVRGLGKY-VAVKNALIDMYGKCGSLEDAR 265

Query: 186 RVF-EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG-VKPTRVTLTIVLLACAE 243
           RVF E    ++ VSWT MI   + + +      L   M      +P  VT+  +L ACA 
Sbjct: 266 RVFDEDSYDKDVVSWTVMIGAYVLNDHASKAFALGSEMLVSSEAQPNAVTMAHLLSACAS 325

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
           L   ++ K  H      G   D  +  AL+  Y +C   +    ++ E+   +    W++
Sbjct: 326 LLSGKHAKCTHALCIRLGLGSDIVVETALVDCYAKCGY-MGVIDMVVEKGS-RRTETWNA 383

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
            I GY+Q     +A+ LF RM  E + P+S T+ +++ +    + L     +HC ++  G
Sbjct: 384 AISGYTQRDQGKKALALFKRMLAESVRPDSATMASVIPAYAESADLVQANNIHCCLLVRG 443

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
                 I   L+++Y+K G +  + ++F  +  +D V+WTT+I+GYG HG+ + A+ L+ 
Sbjct: 444 CLVSTDIATGLIDLYAKAGDLGVAWELFQCLPEKDVVAWTTVIAGYGMHGHAQTAMLLYS 503

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS 483
            M E GV P+ +T+ ++L +C+HAG+V E   LFN++     +    EHY C VD+LG++
Sbjct: 504 RMVELGVMPNTVTIASLLHSCSHAGMVDEGLRLFNDMHGVHGLMPNAEHYLCLVDMLGRA 563

Query: 484 GKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLS 543
           G+IE+A + +  MP +P+  + SSL+ AC +H  +E  E+ A  L E EP+N  NY LL 
Sbjct: 564 GRIEEAYRRIEDMPFEPTVSVWSSLLGACVLHENVEFGEVAAKHLFELEPDNVGNYVLLG 623

Query: 544 MVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            V + +  W   + + RVM    L K  G+  ++
Sbjct: 624 KVYAAAERWSDVQHLRRVMEGMDLHKDPGYCVVD 657



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 111/222 (50%), Gaps = 7/222 (3%)

Query: 272 LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP 331
           L++ YC C        ++ +  +   V + ++++R YS  G   +A+ L+S+MR      
Sbjct: 52  LLYSYCACGCPFDAQNLLAQMPQPASVSVSNTLLRSYSGLGFHRQALALYSQMR----HF 107

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIF 391
           + +T      +C       HG  VH   + AG   D  + NA+++MY +C  + ++  +F
Sbjct: 108 DHLTFTFAAKACAGLRLRRHGRAVHGRALAAGFGSDAYVQNAIVSMYMRCRDVAAAEAVF 167

Query: 392 NEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVK 451
             + +R  VSW T+I+G    G  E AL++F  M + GV  D  +V+++L AC  A  + 
Sbjct: 168 VALPSRTTVSWNTVITGCVKDGRAERALEVFETMVDRGVCIDRASVVSVLPACAQARDLH 227

Query: 452 EAETLFN-NVMKEKKIALAIEHYACYVDLLGKSGKIEDACKV 492
               +    V++     +A+++    +D+ GK G +EDA +V
Sbjct: 228 TGRAVHRLAVVRGLGKYVAVKN--ALIDMYGKCGSLEDARRV 267


>gi|297798412|ref|XP_002867090.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312926|gb|EFH43349.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 803

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 190/576 (32%), Positives = 314/576 (54%), Gaps = 14/576 (2%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
            Y + L LY + +  SG+ +++   P VIK+     + +  G ++H   +K    +D  +
Sbjct: 106 LYFEALQLYCRMVF-SGVKADSFTYPFVIKSVTGISSLEE-GKKIHAMVIKLRFVSDVYV 163

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT--QNGFYVRSLEMFREMYLC 123
            NSLIS+Y K      A ++F+EMP RD +SWNS+I+ +   ++GF  RSL +F+EM   
Sbjct: 164 CNSLISLYMKLGCSWDAEKVFEEMPERDIVSWNSMISGYLALEDGF--RSLMLFKEMLKF 221

Query: 124 GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
           GF          +  CS +    +G+++H   +        V V T++LD+YSK      
Sbjct: 222 GFKPDRFSTMSALGACSHVYSPNMGKELHCHAVRSRIETGDVMVMTSILDMYSKYGEVSY 281

Query: 184 ALRVFEQMVIRNEVSWTAMISGCI--DSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
           A R+F+ ++ RN V+W  +I GC   +S+  D  +   +  ++ G++P  +TL  +L AC
Sbjct: 282 AERIFKCIIQRNIVAWNVLI-GCYARNSRVTDAFLCFQKMSEQNGLQPDVITLINLLPAC 340

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A L     G+ IHGYA   GF     L  AL+ MY E  + L  A +IF+R   K+++ W
Sbjct: 341 AIL----EGRTIHGYAMRRGFLPHIVLDTALIDMYGEWGQ-LKSAEVIFDRIAEKNLISW 395

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           +SII  Y Q+G    A++LF ++    + P+S T+ +IL +      LS G  +H YI+K
Sbjct: 396 NSIIAAYVQNGKNYSALELFQKLWDSSLLPDSTTIASILPAYAESLSLSEGRQIHAYIVK 455

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
           +    +  I N+L++MY+ CG +  + + FN +  +D VSW ++I  Y  HG+G  ++ L
Sbjct: 456 SRYGSNTIILNSLVHMYAMCGDLEDARKCFNHVLLKDVVSWNSIIMAYAVHGFGRISVCL 515

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
           F EM  S V+P+  T  ++L+AC+ +G+V E    F ++ +E  I   IEHY   +DL+G
Sbjct: 516 FSEMIASKVDPNKSTFASLLAACSISGMVDEGWEYFESMKREYGIDPGIEHYGYMLDLIG 575

Query: 482 KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTL 541
           ++G    A + +  MP  P+ RI  SL++A R H  + VAE  A Q+ + E +N   Y L
Sbjct: 576 RTGNFSSAKRFIREMPFLPTARIWGSLLNASRNHNDITVAEFAAEQIFKMEHDNTGCYVL 635

Query: 542 LSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           L  + +E+  W     +  +M +KG+S++   S +E
Sbjct: 636 LLNMYAEARRWEDVNRIKLLMESKGISRTSSRSTVE 671



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 143/514 (27%), Positives = 260/514 (50%), Gaps = 17/514 (3%)

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           DP ++ +L   +A     E A QLFDEM   DT  WN +I  FT  G Y  +L+++  M 
Sbjct: 60  DPALTRALRG-FADSGLMEDALQLFDEMNKADTFVWNVMIKGFTSCGLYFEALQLYCRMV 118

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
             G    +     +I   + I  LE G++IHA+VI    F   V+V  +L+ LY K    
Sbjct: 119 FSGVKADSFTYPFVIKSVTGISSLEEGKKIHAMVI-KLRFVSDVYVCNSLISLYMKLGCS 177

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             A +VFE+M  R+ VSW +MISG +  ++    + LF+ M + G KP R +    L AC
Sbjct: 178 WDAEKVFEEMPERDIVSWNSMISGYLALEDGFRSLMLFKEMLKFGFKPDRFSTMSALGAC 237

Query: 242 AELRDLRNGKAIHGYAYCCGFDF-DHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
           + +     GK +H +A     +  D  +  +++ MY +  E  +  R IF+    +++V 
Sbjct: 238 SHVYSPNMGKELHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAER-IFKCIIQRNIVA 296

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLER-IEPNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
           W+ +I  Y+++  +++A   F +M  +  ++P+ +TL+ +L +C     +  G  +H Y 
Sbjct: 297 WNVLIGCYARNSRVTDAFLCFQKMSEQNGLQPDVITLINLLPACA----ILEGRTIHGYA 352

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEAL 419
           M+ G    + +  AL++MY + G + S+  IF+ +A ++ +SW ++I+ Y  +G    AL
Sbjct: 353 MRRGFLPHIVLDTALIDMYGEWGQLKSAEVIFDRIAEKNLISWNSIIAAYVQNGKNYSAL 412

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479
           +LF ++ +S + PD+ T+ +IL A   +  + E   +   ++K +  +  I      V +
Sbjct: 413 ELFQKLWDSSLLPDSTTIASILPAYAESLSLSEGRQIHAYIVKSRYGSNTI-ILNSLVHM 471

Query: 480 LGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPE-NAAN 538
               G +EDA K  + + +K      +S++ A  +HG   ++  L  ++I ++ + N + 
Sbjct: 472 YAMCGDLEDARKCFNHVLLKDVVS-WNSIIMAYAVHGFGRISVCLFSEMIASKVDPNKST 530

Query: 539 YTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYG 572
           +  L   CS SG     +E W    +  + + YG
Sbjct: 531 FASLLAACSISGM---VDEGWEYFES--MKREYG 559



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 115/241 (47%), Gaps = 21/241 (8%)

Query: 206 CIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFD 265
           C+ S+N+ T             KP R+ L        +L D    +A+ G+A        
Sbjct: 20  CVSSENHQTTGKRSLEFDSRFSKPVRLVLRDRYKVTKQLNDPALTRALRGFA-------- 71

Query: 266 HHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR 325
               + LM       +AL     +F+     D  +W+ +I+G++  G   EA++L+ RM 
Sbjct: 72  ---DSGLME------DALQ----LFDEMNKADTFVWNVMIKGFTSCGLYFEALQLYCRMV 118

Query: 326 LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSIT 385
              ++ +S T   ++ S T  S L  G  +H  ++K     DV + N+L+++Y K G   
Sbjct: 119 FSGVKADSFTYPFVIKSVTGISSLEEGKKIHAMVIKLRFVSDVYVCNSLISLYMKLGCSW 178

Query: 386 SSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
            + ++F EM  RD VSW ++ISGY     G  +L LF EM + G +PD  + ++ L AC+
Sbjct: 179 DAEKVFEEMPERDIVSWNSMISGYLALEDGFRSLMLFKEMLKFGFKPDRFSTMSALGACS 238

Query: 446 H 446
           H
Sbjct: 239 H 239


>gi|297827565|ref|XP_002881665.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327504|gb|EFH57924.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 836

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 165/494 (33%), Positives = 287/494 (58%), Gaps = 3/494 (0%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G+ +H   ++ G  +D  ++ SLI+MY+K  + E A QLF ++  RD +SW+++I  F Q
Sbjct: 319 GIAIHEYTVQQGMMSDISVATSLINMYSKCGELELAEQLFIKIKDRDVVSWSAMIASFEQ 378

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
            G +  +L +FR+M    F   A  L  ++  C+ +    LG+ IH   I     E  + 
Sbjct: 379 AGQHDEALSLFRDMMRTHFKPNAVTLTSVLQGCAGVAASRLGKSIHCYAI-KADVESELE 437

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
            +TA++ +Y+KC  +   L+ FE++ I++ +++ A+  G     +     D+++ M+  G
Sbjct: 438 TATAVISMYAKCGLFSPTLKAFERLPIKDAIAFNALAQGYTQIGDASKAFDVYKNMKLHG 497

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           V P   T+  +L  CA   D   G  ++G     GFD + H++ AL+ M+ +C +AL  A
Sbjct: 498 VCPDSGTMVGMLQTCALCSDYARGSCVYGQIIKHGFDSECHVAHALIDMFTKC-DALAAA 556

Query: 287 RIIFERTKV-KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           + +F++    K  V W+ ++ GY   G   EA+  F +M++E+ +PN+VT + I+ +   
Sbjct: 557 KSLFDKCGFEKSTVSWNIMMNGYLLHGQAEEAIATFRQMKVEKFQPNAVTFVNIVRAAAE 616

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
            + LS G+ VH  +++ G      +GN+L++MY+KCG I SS + F E+  ++ VSW T+
Sbjct: 617 LAALSLGMSVHSSLIQFGFCSHTPVGNSLVDMYAKCGMIESSKKCFIEIRNKNMVSWNTM 676

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           +S Y  HG    A+ LFL MQE+ ++PD+++ L++LSAC HAGL +E + +F  + +  K
Sbjct: 677 LSAYAAHGLANCAVSLFLSMQENELKPDSVSFLSVLSACRHAGLAEEGKRIFKEMEERHK 736

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
           I   +EHYAC VDLLGKSG  ++A ++V  M +K S  +  +L+++ R+H  L ++    
Sbjct: 737 IEAKVEHYACMVDLLGKSGLFDEAVEMVRRMRVKASVGVWGALLNSSRMHCNLWLSNAAL 796

Query: 526 HQLIEAEPENAANY 539
            QL++ EP N ++Y
Sbjct: 797 CQLVKLEPLNPSHY 810



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 145/541 (26%), Positives = 268/541 (49%), Gaps = 17/541 (3%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
            +++ L ++       G+  +       +KACA +   +  GL++H    + G ++D  I
Sbjct: 79  LHKEALEVFGYMSEAKGIDPDKYTFTFALKACAGSMDFEE-GLRIHDLIAEMGFESDVYI 137

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
             +L+ MY K     SA Q+FD+MP +D ++WN++++   QNG    +L +FR+M+    
Sbjct: 138 GTALVEMYCKAGDLVSARQVFDKMPVKDIVTWNTMVSGLAQNGCSSEALRLFRDMHSSFV 197

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
            +    L  +I   S++ + ++ R +H LVI  G    +   S+ L+D+Y KC     A 
Sbjct: 198 DIDHVSLYNLIPAVSKLEKNDVCRCLHGLVIKKG---FTSAFSSGLIDMYCKCADLYAAE 254

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
            VFE++  ++E SW  M++    + +++  ++LF  M+   V+  +V     L A A + 
Sbjct: 255 CVFEEVFSKDESSWGTMMAAYAHNGSFEEVLELFDVMRNYDVRMNKVAAASALQAAAYVG 314

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
           +L  G AIH Y    G   D  ++ +L++MY +C E L  A  +F + K +DVV WS++I
Sbjct: 315 NLEKGIAIHEYTVQQGMMSDISVATSLINMYSKCGE-LELAEQLFIKIKDRDVVSWSAMI 373

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
             + Q+G   EA+ LF  M     +PN+VTL ++L  C   +    G  +HCY +KA + 
Sbjct: 374 ASFEQAGQHDEALSLFRDMMRTHFKPNAVTLTSVLQGCAGVAASRLGKSIHCYAIKADVE 433

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            ++    A+++MY+KCG  + + + F  +  +D +++  L  GY   G   +A  ++  M
Sbjct: 434 SELETATAVISMYAKCGLFSPTLKAFERLPIKDAIAFNALAQGYTQIGDASKAFDVYKNM 493

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK-----EKKIALAIEHYACYVDLL 480
           +  GV PD+ T++ +L  C           ++  ++K     E  +A A+      +D+ 
Sbjct: 494 KLHGVCPDSGTMVGMLQTCALCSDYARGSCVYGQIIKHGFDSECHVAHAL------IDMF 547

Query: 481 GKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL-IEAEPENAANY 539
            K   +  A  +      + ST   + +++   +HG+ E A     Q+ +E    NA  +
Sbjct: 548 TKCDALAAAKSLFDKCGFEKSTVSWNIMMNGYLLHGQAEEAIATFRQMKVEKFQPNAVTF 607

Query: 540 T 540
            
Sbjct: 608 V 608



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 130/464 (28%), Positives = 231/464 (49%), Gaps = 28/464 (6%)

Query: 48  LQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQN 107
           LQ+H + + +G        N LI+ Y+ F +P+ + ++ D +PY   + WNS+I  +T+ 
Sbjct: 22  LQIHGSLIVAGLKP----HNQLINAYSLFQRPDLSRKIVDSVPYPGVVLWNSMIRGYTRA 77

Query: 108 GFYVRSLEMFREM----------YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIV 157
           G +  +LE+F  M          Y   F LKA         C+   + E G +IH L I 
Sbjct: 78  GLHKEALEVFGYMSEAKGIDPDKYTFTFALKA---------CAGSMDFEEGLRIHDL-IA 127

Query: 158 DGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGID 217
           +  FE  V++ TAL+++Y K    + A +VF++M +++ V+W  M+SG   +      + 
Sbjct: 128 EMGFESDVYIGTALVEMYCKAGDLVSARQVFDKMPVKDIVTWNTMVSGLAQNGCSSEALR 187

Query: 218 LFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYC 277
           LFR M    V    V+L  ++ A ++L      + +HG     GF      S+ L+ MYC
Sbjct: 188 LFRDMHSSFVDIDHVSLYNLIPAVSKLEKNDVCRCLHGLVIKKGFT--SAFSSGLIDMYC 245

Query: 278 ECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLL 337
           +C + L+ A  +FE    KD   W +++  Y+ +G   E ++LF  MR   +  N V   
Sbjct: 246 KCAD-LYAAECVFEEVFSKDESSWGTMMAAYAHNGSFEEVLELFDVMRNYDVRMNKVAAA 304

Query: 338 AILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR 397
           + L +      L  G+ +H Y ++ G+  D+S+  +L+NMYSKCG +  + Q+F ++  R
Sbjct: 305 SALQAAAYVGNLEKGIAIHEYTVQQGMMSDISVATSLINMYSKCGELELAEQLFIKIKDR 364

Query: 398 DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLF 457
           D VSW+ +I+ +   G  +EAL LF +M  +  +P+A+T+ ++L  C      +  +++ 
Sbjct: 365 DVVSWSAMIASFEQAGQHDEALSLFRDMMRTHFKPNAVTLTSVLQGCAGVAASRLGKSIH 424

Query: 458 NNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPS 501
              +K   +   +E     + +  K G      K    +P+K +
Sbjct: 425 CYAIK-ADVESELETATAVISMYAKCGLFSPTLKAFERLPIKDA 467


>gi|357116286|ref|XP_003559913.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 692

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 172/585 (29%), Positives = 310/585 (52%), Gaps = 17/585 (2%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           +V    + + L  Y   +    + ++    P VIKACA        G+      ++   +
Sbjct: 116 LVDSGQFAEALETYWAMVRDGSVAADGFTYPPVIKACAA------LGVVEQGRMVRENVE 169

Query: 61  ADPV---------ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYV 111
           AD V         +  +L+ M+AK      A  +F+ M  RD  +W ++I      G ++
Sbjct: 170 ADVVRGVVAPSVFVQCALVDMFAKCGCLGEARSVFESMLERDLAAWTAMIGGAVHAGDWL 229

Query: 112 RSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTAL 171
            ++ +F  M   GF+  + ++A +I  C +  EL  G  +H   +  G  +    VS AL
Sbjct: 230 DAMSLFSRMRSEGFLADSVIIATVIPACGRAKELRTGMVLHGCAVRCGVGD-DTCVSNAL 288

Query: 172 LDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTR 231
           +D+Y KC    +A RVF  +  ++ VSW+ +I+G   +      ++LF  M   G+KP  
Sbjct: 289 VDMYCKCGCLGMADRVFWSIGFKDVVSWSTLIAGYSQNGKDHVSVNLFTEMVTAGLKPNS 348

Query: 232 VTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFE 291
            T+  +L + +E++  R+GK IHG++   GFD    L +A +  Y     ++  A I+ E
Sbjct: 349 NTMASILPSLSEMKLFRHGKEIHGFSLRNGFDQSKFLGSAFIDFYSR-QGSIREAEIVLE 407

Query: 292 RTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSH 351
               +D+VIW+S++ GY+ +G+   A+  F  ++     P+ VT++++L  C   S L  
Sbjct: 408 LMPKRDLVIWNSMVAGYAVNGNTDSALCAFRALQKVGFRPDHVTVVSVLPVCNHHSRLIQ 467

Query: 352 GLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGF 411
           G  +H Y+++  ++   S+ NAL++MY KC  +    +IF  +  RD  ++ TLIS +G 
Sbjct: 468 GKELHAYVVRHYMSSVCSVSNALIDMYCKCCCLEKGKEIFQLVTDRDTATYNTLISSFGK 527

Query: 412 HGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIE 471
           HG+ +EA+ LF  M+  G+ PD +T +A+LS+C+HAGL+++    ++ ++++  I+   E
Sbjct: 528 HGHEDEAIMLFDLMKRDGIAPDKVTFVALLSSCSHAGLIEKGLHFYDIMLQDYNISPGKE 587

Query: 472 HYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA 531
           HY+C VDL  +SGK++DA K VS++  +    +L  L+ ACR+H R+++AE++A ++ E 
Sbjct: 588 HYSCVVDLYSRSGKLDDAWKFVSSLQDEAEIDVLGCLLGACRVHNRMDIAELVAKRIFEQ 647

Query: 532 EPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
            P +   + LLS + + +G W     +  ++  + L    G S I
Sbjct: 648 NPSDPGYHILLSNIYANAGMWSHVTRIRTMIENRSLKNKTGNSLI 692



 Score =  238 bits (607), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 153/494 (30%), Positives = 252/494 (51%), Gaps = 12/494 (2%)

Query: 64  VISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC 123
           V++  L+  YA+  +   A  + D MP R++ +WN+ I     +G +  +LE +  M   
Sbjct: 76  VLAAQLVHAYARLGEAGRALSVLDGMPMRNSFAWNAAIKGLVDSGQFAEALETYWAMVRD 135

Query: 124 GFVLKAELL-AGIISLCSQIGELELGRQIHALV---IVDGSFELSVFVSTALLDLYSKCH 179
           G V         +I  C+ +G +E GR +   V   +V G    SVFV  AL+D+++KC 
Sbjct: 136 GSVAADGFTYPPVIKACAALGVVEQGRMVRENVEADVVRGVVAPSVFVQCALVDMFAKCG 195

Query: 180 HWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLL 239
               A  VFE M+ R+  +WTAMI G + + ++   + LF  M+ EG     V +  V+ 
Sbjct: 196 CLGEARSVFESMLERDLAAWTAMIGGAVHAGDWLDAMSLFSRMRSEGFLADSVIIATVIP 255

Query: 240 ACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVV 299
           AC   ++LR G  +HG A  CG   D  +S AL+ MYC+C   L  A  +F     KDVV
Sbjct: 256 ACGRAKELRTGMVLHGCAVRCGVGDDTCVSNALVDMYCKCG-CLGMADRVFWSIGFKDVV 314

Query: 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
            WS++I GYSQ+G    ++ LF+ M    ++PNS T+ +IL S +      HG  +H + 
Sbjct: 315 SWSTLIAGYSQNGKDHVSVNLFTEMVTAGLKPNSNTMASILPSLSEMKLFRHGKEIHGFS 374

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEAL 419
           ++ G +    +G+A ++ YS+ GSI  +  +   M  RD V W ++++GY  +G  + AL
Sbjct: 375 LRNGFDQSKFLGSAFIDFYSRQGSIREAEIVLELMPKRDLVIWNSMVAGYAVNGNTDSAL 434

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479
             F  +Q+ G  PD +TV+++L  CNH   + + + L   V++    ++     A  +D+
Sbjct: 435 CAFRALQKVGFRPDHVTVVSVLPVCNHHSRLIQGKELHAYVVRHYMSSVCSVSNA-LIDM 493

Query: 480 LGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE---PENA 536
             K   +E   K +  +     T   ++L+S+   HG  + A ML   L++ +   P+  
Sbjct: 494 YCKCCCLEKG-KEIFQLVTDRDTATYNTLISSFGKHGHEDEAIML-FDLMKRDGIAPDKV 551

Query: 537 ANYTLLSMVCSESG 550
               LLS  CS +G
Sbjct: 552 TFVALLSS-CSHAG 564



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 121/437 (27%), Positives = 214/437 (48%), Gaps = 34/437 (7%)

Query: 139 CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
           C  + E    R++HA ++V G       ++  L+  Y++      AL V + M +RN  +
Sbjct: 52  CPTLAE---ARRLHAALLVGGHHRRGAVLAAQLVHAYARLGEAGRALSVLDGMPMRNSFA 108

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREG-VKPTRVTLTIVLLACAELRDLRNGK------ 251
           W A I G +DS  +   ++ + AM R+G V     T   V+ ACA L  +  G+      
Sbjct: 109 WNAAIKGLVDSGQFAEALETYWAMVRDGSVAADGFTYPPVIKACAALGVVEQGRMVRENV 168

Query: 252 ---AIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
               + G      F     +  AL+ M+ +C   L  AR +FE    +D+  W+++I G 
Sbjct: 169 EADVVRGVVAPSVF-----VQCALVDMFAKCG-CLGEARSVFESMLERDLAAWTAMIGGA 222

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
             +GD  +AM LFSRMR E    +SV +  ++ +C R   L  G+ +H   ++ G+  D 
Sbjct: 223 VHAGDWLDAMSLFSRMRSEGFLADSVIIATVIPACGRAKELRTGMVLHGCAVRCGVGDDT 282

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
            + NAL++MY KCG +  + ++F  +  +D VSW+TLI+GY  +G    ++ LF EM  +
Sbjct: 283 CVSNALVDMYCKCGCLGMADRVFWSIGFKDVVSWSTLIAGYSQNGKDHVSVNLFTEMVTA 342

Query: 429 GVEPDAITVLAILSACNHAGLVKEAE-----TLFNNVMKEKKIALAIEHYACYVDLLGKS 483
           G++P++ T+ +IL + +   L +  +     +L N   + K +  A      ++D   + 
Sbjct: 343 GLKPNSNTMASILPSLSEMKLFRHGKEIHGFSLRNGFDQSKFLGSA------FIDFYSRQ 396

Query: 484 GKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA--EMLAHQLIEAEPENAANYTL 541
           G I +A  V+  MP K    I +S+V+   ++G  + A     A Q +   P++    ++
Sbjct: 397 GSIREAEIVLELMP-KRDLVIWNSMVAGYAVNGNTDSALCAFRALQKVGFRPDHVTVVSV 455

Query: 542 LSMVCSESGNWLGAEEV 558
           L  VC+     +  +E+
Sbjct: 456 LP-VCNHHSRLIQGKEL 471


>gi|449521571|ref|XP_004167803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Cucumis sativus]
          Length = 817

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 179/536 (33%), Positives = 309/536 (57%), Gaps = 11/536 (2%)

Query: 50  LHCTALKSGSD--ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQN 107
           +H   +K GS+   D  + +S I MYA+    E A ++FD    R+T  WN++I+ F QN
Sbjct: 232 VHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWNTMISAFVQN 291

Query: 108 GFYVRSLEMFREMYLCGFVLKAEL-LAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
            F +  +++F +          E+ L   IS  S + + EL  Q+HA VI + +    V 
Sbjct: 292 NFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVIKNVAVT-QVC 350

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           V  AL+ +YS+C+    + ++F+ M  ++ VSW  MIS  + +   D  + LF  M+++ 
Sbjct: 351 VMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALMLFYEMKKQD 410

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           +    VT+T +L A ++LR+   GK  HGY    G  F+  + + L+ MY + +  +  A
Sbjct: 411 LMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFEG-MDSYLIDMYAK-SGLIEAA 468

Query: 287 RIIFERT--KVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
           + +FE++    +D   W+S++ GY+Q+G + +A  +  +M  +++ PN VTL +IL +C 
Sbjct: 469 QNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLASILPACN 528

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
              ++  G  +H + ++  L+ +V +  AL++MYSK GSI  +  +F++   +  V+++T
Sbjct: 529 PSGYIDWGKQLHGFSIRNDLDQNVFVATALIDMYSKSGSIAHAENVFSKANEKSIVTYST 588

Query: 405 LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK 464
           +I GYG HG GE AL +F  MQ+SG++PDA+T++A+LSAC++AGLV E   +F ++    
Sbjct: 589 MILGYGQHGMGESALFMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQIFESMRTVY 648

Query: 465 KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPST-RILSSLVSACRIHGRLEVAEM 523
            I  + EH+ C  D+LG++G+++ A + V  +  K +   I  SL++ACRIH + E+ ++
Sbjct: 649 NIQPSTEHFCCVADMLGRAGRVDKAYEFVIGLGEKGNVMEIWGSLLAACRIHKQFELGKL 708

Query: 524 LAHQLIEAEPENAAN--YTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +A +L+E E  N     + LLS + +E  NW   + V + MR +GL K  G S IE
Sbjct: 709 VAKKLLEMEKINGKTGYHVLLSNIYAEERNWENVDIVRKQMRERGLKKETGSSWIE 764



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 102/357 (28%), Positives = 188/357 (52%), Gaps = 8/357 (2%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V  +F  + + L+ Q +       +   L S I A ++ Q  +    QLH   +K+ +  
Sbjct: 289 VQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFE-LAEQLHAFVIKNVAVT 347

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
              + N+LI+MY++ +  ++++++FD MP +D +SWN++I+ F QNG    +L +F EM 
Sbjct: 348 QVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALMLFYEMK 407

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDG-SFELSVFVSTALLDLYSKCHH 180
               ++ +  +  ++S  S +   ++G+Q H  ++ +G  FE    + + L+D+Y+K   
Sbjct: 408 KQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFE---GMDSYLIDMYAKSGL 464

Query: 181 WLIALRVFEQMVI--RNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVL 238
              A  VFE+     R++ +W +M+SG   +   D    + R M  + V P  VTL  +L
Sbjct: 465 IEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLASIL 524

Query: 239 LACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDV 298
            AC     +  GK +HG++     D +  ++ AL+ MY +     H A  +F +   K +
Sbjct: 525 PACNPSGYIDWGKQLHGFSIRNDLDQNVFVATALIDMYSKSGSIAH-AENVFSKANEKSI 583

Query: 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV 355
           V +S++I GY Q G    A+ +F RM+   I+P++VTL+A+LS+C+    +  GL +
Sbjct: 584 VTYSTMILGYGQHGMGESALFMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQI 640



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 141/540 (26%), Positives = 249/540 (46%), Gaps = 42/540 (7%)

Query: 40  AQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNS 99
           +Q+  H  L  H T  K      P I   L S   +  +   A QLFD +P   T+ WN+
Sbjct: 11  SQSPSHLPLHTHSTNPKI-----PTIRYRL-SRLCQEGQLHLARQLFDALPRPSTVLWNT 64

Query: 100 IINCFTQNGFYVRSLEMFREMYLCGFVLKAE--LLAGIISLCSQIGELELGRQIHALVIV 157
           II     N F   +L  +  M      +K +    + ++  C+    L +G+ +HA  + 
Sbjct: 65  IIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSSVLKACADTRNLVVGKAVHAHFL- 123

Query: 158 DGSFELSVFVSTALLDLYSKCHHWL-------------IALRVFEQMVIRNEVSWTAMIS 204
                 S  V  +LL++YS C                 +  +VF+ M  R  V+W  +I+
Sbjct: 124 RCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCDLVRKVFDTMRKRTVVAWNTLIA 183

Query: 205 GCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDF 264
             + ++ Y   +  F  M + G+KP+ V+   V  A + L D +N   +HG     G ++
Sbjct: 184 WYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFSSLGDFKNANVVHGMLVKLGSEY 243

Query: 265 --DHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFS 322
             D ++ ++ + MY E    L  A+ +F+    ++  +W+++I  + Q+    E ++LF 
Sbjct: 244 VNDLYVVSSAIFMYAELG-CLEFAKKVFDNCLERNTEVWNTMISAFVQNNFSLEGIQLFF 302

Query: 323 R-MRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
           + +  E    + VTLL+ +S+ +          +H +++K      V + NAL+ MYS+C
Sbjct: 303 QAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRC 362

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
            SI +S +IF+ M  +D VSW T+IS +  +G  +EAL LF EM++  +  D++TV A+L
Sbjct: 363 NSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALL 422

Query: 442 SACN-----HAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVV-ST 495
           SA +       G       L N +  E   +  I+ YA       KSG IE A  V   +
Sbjct: 423 SAASDLRNPDIGKQTHGYLLRNGIQFEGMDSYLIDMYA-------KSGLIEAAQNVFEKS 475

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEP-ENAANYTLLSMVCSESG--NW 552
              +      +S++S    +G ++ A ++  Q+++ +   N      +   C+ SG  +W
Sbjct: 476 FSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLASILPACNPSGYIDW 535


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 171/524 (32%), Positives = 294/524 (56%), Gaps = 2/524 (0%)

Query: 54  ALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRS 113
           ++ +G  +D  + +++++ Y KFS+  +A ++FD M  RDT+ WN++++   +N  +  +
Sbjct: 132 SIVAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEA 191

Query: 114 LEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLD 173
           + +F +M   G    +  +A ++   +++ +L LG  I  L +  G F    +V T L  
Sbjct: 192 ILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVG-FHSHAYVITGLAC 250

Query: 174 LYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVT 233
           LYSKC     A  +F Q+   + VS+ AMISG   +   ++ + LF+ +   G K    +
Sbjct: 251 LYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSS 310

Query: 234 LTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERT 293
           +  ++        L   + IHG+    G   +  +S AL  +Y    E +  AR++F+ +
Sbjct: 311 IVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNE-IESARLLFDES 369

Query: 294 KVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGL 353
             K +  W+++I GY+Q+G   +A+ LF  M+   + PN VT+ +ILS+C +   LS G 
Sbjct: 370 SEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGK 429

Query: 354 GVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHG 413
            VH  I +     ++ +  AL++MY+KCGSIT + ++F+ M  ++ V+W  +ISGYG HG
Sbjct: 430 WVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHG 489

Query: 414 YGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY 473
           YG EAL LF EM  S V P  +T L++L AC+HAGLV+E + +F +++ +       EHY
Sbjct: 490 YGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHY 549

Query: 474 ACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEP 533
           AC VDLLG++G ++ A   +  MP++P   +  +L+ AC IH    +A + + +L E +P
Sbjct: 550 ACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDKLFELDP 609

Query: 534 ENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +N   Y LLS + S   N+  A  V  V++ + L+K+ G + IE
Sbjct: 610 QNVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIE 653



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/269 (33%), Positives = 141/269 (52%), Gaps = 15/269 (5%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E ++ L+K EL  SG   N++ +  +I    +   H H    +H    KSG  ++  +S 
Sbjct: 290 ESSVRLFK-ELLVSGEKVNSSSIVGLIPVF-FPFGHLHLTRCIHGFCTKSGVVSNSSVST 347

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +L ++Y++ ++ ESA  LFDE   +   SWN++I+ + QNG   +++ +F+EM  C    
Sbjct: 348 ALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRP 407

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
               +  I+S C+Q+G L LG+ +H L+  + SFE ++FVSTAL+D+Y+KC     A R+
Sbjct: 408 NPVTVTSILSACAQLGALSLGKWVHDLINRE-SFESNIFVSTALIDMYAKCGSITEAQRL 466

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F  M  +N V+W AMISG          ++LF  M    V PT VT   VL AC+    +
Sbjct: 467 FSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLV 526

Query: 248 RNGKAI-------HGYA-----YCCGFDF 264
           R G  I       HG+      Y C  D 
Sbjct: 527 REGDEIFRSMVHDHGFEPLPEHYACMVDL 555



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 85/164 (51%), Gaps = 4/164 (2%)

Query: 281 EALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER-IEPNSVTLLAI 339
           +A+  A ++F      D+ +++ +IR +S +   S A+ L++ +R    +EP++ T   +
Sbjct: 56  KAIDQASLLFSTIPNPDLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFV 115

Query: 340 LSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDF 399
           +S  +               + AG   D+ +G+A++  Y K   + ++ ++F+ M  RD 
Sbjct: 116 ISGASSLGLGLLLHAHS---IVAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDT 172

Query: 400 VSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
           V W T++SG   +   +EA+ +F +M + G+  D+ TV A+L  
Sbjct: 173 VLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPG 216


>gi|297815974|ref|XP_002875870.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321708|gb|EFH52129.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 700

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 177/552 (32%), Positives = 299/552 (54%), Gaps = 3/552 (0%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           +T+++  V+KAC  + ++  +G  LH  A+K+   +   + +SL+ MY +  K E + ++
Sbjct: 101 DTSVVSVVLKACGQS-SNIAYGESLHAYAVKTSLLSSVFVGSSLLDMYKRVGKIEKSCRV 159

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL 145
           F EMP+R+ ++W +II      G Y   L  F EM     +      A  +  C+ + ++
Sbjct: 160 FSEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSSSEELSDTFTFAIALKACAGLRQV 219

Query: 146 ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISG 205
           + G+QIH  VIV G F+ +V+V+ +L  +Y++C      L +FE M  R+ VSWT++I  
Sbjct: 220 KYGKQIHTHVIVRG-FDATVWVANSLATMYTECGEMRDGLCLFENMSERDVVSWTSLIVA 278

Query: 206 CIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFD 265
                + +  ++ F  M+   V P   T   +  ACA L  L  G+ +H   +  G +  
Sbjct: 279 YNRIGHEEKAVETFIKMRNSQVPPNEQTFATMFSACASLSRLVWGEQLHCNVFSLGLNDS 338

Query: 266 HHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR 325
             +S ++M MY  C + L  A ++F+  + +D++ WS+II GYSQ+G   EA K FS MR
Sbjct: 339 LSVSNSMMKMYSTCGK-LDSASVLFQGMRCRDIISWSTIIGGYSQAGFGEEAFKYFSWMR 397

Query: 326 LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSIT 385
               +P    L ++LS     + L  G  VH      GL  + ++ + L+NMYSKCG+I 
Sbjct: 398 QSGPKPTDFALASLLSVSGNMAVLEGGRQVHALAFCFGLEQNSTVRSTLINMYSKCGNIK 457

Query: 386 SSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
            + +IF E    D VS T +I+GY  HG  +EA+ LF +  + G  PD++T +++L+AC 
Sbjct: 458 EASKIFEETDRDDIVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFSPDSVTFISVLTACT 517

Query: 446 HAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRIL 505
           H+G +      FN + ++  +  A EHY C VDLL ++G++ +A K++  M  K    + 
Sbjct: 518 HSGQLDLGFHYFNLMQEKYNMRPAKEHYGCMVDLLCRAGRLSEAEKMIDEMSWKKDDVVW 577

Query: 506 SSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAK 565
           ++L+ AC+  G +E     A +++E +P  A     L+ + S +GN   A  V + M+AK
Sbjct: 578 TTLLIACKAKGDIERGRRAAERILELDPTCATALVTLANIYSSTGNLEEAANVRKNMKAK 637

Query: 566 GLSKSYGFSRIE 577
           G+ K  G+S I+
Sbjct: 638 GVIKEPGWSSIK 649



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/280 (29%), Positives = 142/280 (50%), Gaps = 3/280 (1%)

Query: 183 IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQ--REGVKPTRVTLTIVLLA 240
           +A +VF++M  R+ VSWTA+I G + + N D  + LF AM+     V P    +++VL A
Sbjct: 52  VARQVFDKMPHRDIVSWTAIIKGYVTANNSDEAMILFSAMRVVDPAVSPDTSVVSVVLKA 111

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
           C +  ++  G+++H YA          + ++L+ MY    +     R +F     ++ V 
Sbjct: 112 CGQSSNIAYGESLHAYAVKTSLLSSVFVGSSLLDMYKRVGKIEKSCR-VFSEMPFRNAVT 170

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           W++II G   +G   E +  FS M       ++ T    L +C     + +G  +H +++
Sbjct: 171 WTAIITGLVHAGRYKEGLTYFSEMSSSEELSDTFTFAIALKACAGLRQVKYGKQIHTHVI 230

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
             G +  V + N+L  MY++CG +     +F  M+ RD VSWT+LI  Y   G+ E+A++
Sbjct: 231 VRGFDATVWVANSLATMYTECGEMRDGLCLFENMSERDVVSWTSLIVAYNRIGHEEKAVE 290

Query: 421 LFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNV 460
            F++M+ S V P+  T   + SAC     +   E L  NV
Sbjct: 291 TFIKMRNSQVPPNEQTFATMFSACASLSRLVWGEQLHCNV 330



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 108/202 (53%), Gaps = 8/202 (3%)

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
           FD + HL + +          L  AR +F++   +D+V W++II+GY  + +  EAM LF
Sbjct: 35  FDTNSHLRSLIN------AGNLRVARQVFDKMPHRDIVSWTAIIKGYVTANNSDEAMILF 88

Query: 322 SRMRL--ERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           S MR+    + P++  +  +L +C + S +++G  +H Y +K  L   V +G++L++MY 
Sbjct: 89  SAMRVVDPAVSPDTSVVSVVLKACGQSSNIAYGESLHAYAVKTSLLSSVFVGSSLLDMYK 148

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           + G I  S ++F+EM  R+ V+WT +I+G    G  +E L  F EM  S    D  T   
Sbjct: 149 RVGKIEKSCRVFSEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSSSEELSDTFTFAI 208

Query: 440 ILSACNHAGLVKEAETLFNNVM 461
            L AC     VK  + +  +V+
Sbjct: 209 ALKACAGLRQVKYGKQIHTHVI 230



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 74/137 (54%), Gaps = 6/137 (4%)

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ--ESGVEPDAITVLA 439
           G++  + Q+F++M  RD VSWT +I GY      +EA+ LF  M+  +  V PD   V  
Sbjct: 48  GNLRVARQVFDKMPHRDIVSWTAIIKGYVTANNSDEAMILFSAMRVVDPAVSPDTSVVSV 107

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           +L AC  +  +   E+L    +K   ++ ++   +  +D+  + GKIE +C+V S MP +
Sbjct: 108 VLKACGQSSNIAYGESLHAYAVKTSLLS-SVFVGSSLLDMYKRVGKIEKSCRVFSEMPFR 166

Query: 500 PS---TRILSSLVSACR 513
            +   T I++ LV A R
Sbjct: 167 NAVTWTAIITGLVHAGR 183


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 188/603 (31%), Positives = 313/603 (51%), Gaps = 33/603 (5%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAY--AQTHQHFGLQLHCTALKSG---SDA 61
           +E+ L   +  L       ++  L SV+ AC++      +  G + H  ALK G      
Sbjct: 149 WERALDALRDMLAEGRHDVSSFTLVSVLLACSHLPGDDGRRLGREAHAFALKRGFLDEGR 208

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYR------DTISWNSIINCFTQNGFYVRSLE 115
           +    N+L+SMYA+    + A  LF            D ++WN++I+   Q G    ++E
Sbjct: 209 ERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQGGRCAEAVE 268

Query: 116 MFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLY 175
           +  +M   G        A  +  CS++  L LGR++HA+V+ D     + FV++AL+D+Y
Sbjct: 269 VLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLKDADLAANSFVASALVDMY 328

Query: 176 SKCHHWLIALRVFEQMV--IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE-GVKPTRV 232
           +       A RVF+ +    R    W AMI G   +   +  ++LF  M+ E G  P+  
Sbjct: 329 AGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPSET 388

Query: 233 TLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFER 292
           T++ VL ACA        +A+HGY    G   +  +  ALM MY    E +  AR IF  
Sbjct: 389 TMSGVLPACARSEGFAGKEAMHGYVVKRGMAGNRFVQNALMDMYARLGE-MDVARRIFAM 447

Query: 293 TKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRL----------------ERIEPNSVTL 336
              +DVV W+++I G    G  +EA +L + M+L                 R  PN++TL
Sbjct: 448 IDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRCMPNNITL 507

Query: 337 LAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA 396
           + +L  C   +  + G  +H Y ++  L  D+++G+AL++MY+KCG + +S  +F+ +  
Sbjct: 508 MTLLPGCAALAAPARGKEIHGYAVRHALESDIAVGSALVDMYAKCGCLAASRAVFDRLPR 567

Query: 397 RDFVSWTTLISGYGFHGYGEEALQLFLEMQESG-VEPDAITVLAILSACNHAGLVKEAET 455
           R+ ++W  LI  YG HG G+EA+ LF EM   G   P+ +T +A L+AC+H+GLV     
Sbjct: 568 RNVITWNVLIMAYGMHGLGDEAVALFDEMAAGGEATPNEVTFIAALAACSHSGLVDRGLE 627

Query: 456 LFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKPSTRILSSLVSACRI 514
           LF+ + ++  +    + +AC VD+LG++G++++A  ++++M P +      SSL+ ACR+
Sbjct: 628 LFHGMERDHGVKPTPDLHACVVDVLGRAGRLDEAYSIITSMEPGEQQVSAWSSLLGACRL 687

Query: 515 HGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFS 574
           H  +E+ E+ A +L E EP  A++Y LL  + S +G W  +  V   MR +G++K  G S
Sbjct: 688 HRNVELGEVAAERLFELEPGEASHYVLLCNIYSAAGMWDKSVAVRVRMRRQGVAKEPGCS 747

Query: 575 RIE 577
            IE
Sbjct: 748 WIE 750



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 147/548 (26%), Positives = 242/548 (44%), Gaps = 59/548 (10%)

Query: 50  LHCTALKSG--SDADPVISNSLISMYAK--FSKPESAYQLFDEMPYRDTISWNSIINCFT 105
           LH  AL+        P + N+L++ YA+        A         RD +S+NS+I+   
Sbjct: 85  LHAAALRRALLHRPSPAVGNALLTAYARCGDLDAALALFAATATELRDAVSYNSLISALC 144

Query: 106 QNGFYVRSLEMFREMYLCG------FVLKAELLAGIISLCSQI-GE--LELGRQIHALVI 156
               + R+L+  R+M   G      F L + LLA     CS + G+    LGR+ HA  +
Sbjct: 145 LFRQWERALDALRDMLAEGRHDVSSFTLVSVLLA-----CSHLPGDDGRRLGREAHAFAL 199

Query: 157 VDGSFE--LSVFVSTALLDLYSKCHHWLIALRVFEQMVIR------NEVSWTAMISGCID 208
             G  +     F   ALL +Y++      A  +F            + V+W  MIS  + 
Sbjct: 200 KRGFLDEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQ 259

Query: 209 SQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC-CGFDFDHH 267
                  +++   M   GV+P  VT    L AC+ L  L  G+ +H           +  
Sbjct: 260 GGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLKDADLAANSF 319

Query: 268 LSAALMHMYCECTEALHPARIIFERT--KVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR 325
           +++AL+ MY    E +  AR +F+      + + +W+++I GY+Q+G   EA++LFSRM 
Sbjct: 320 VASALVDMYAG-NEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEALELFSRME 378

Query: 326 LER-IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSI 384
            E    P+  T+  +L +C R    +    +H Y++K G+  +  + NALM+MY++ G +
Sbjct: 379 AEAGCAPSETTMSGVLPACARSEGFAGKEAMHGYVVKRGMAGNRFVQNALMDMYARLGEM 438

Query: 385 TSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ------------ESGVE- 431
             + +IF  +  RD VSW TLI+G    G+  EA QL  EMQ            E G   
Sbjct: 439 DVARRIFAMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGEAH 498

Query: 432 ---PDAITVLAILSACNHAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLLGKSGK 485
              P+ IT++ +L  C         + +    ++   E  IA+     +  VD+  K G 
Sbjct: 499 RCMPNNITLMTLLPGCAALAAPARGKEIHGYAVRHALESDIAVG----SALVDMYAKCGC 554

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLI---EAEPENAANYTLL 542
           +  +  V   +P + +    + L+ A  +HG  + A  L  ++    EA P N   +   
Sbjct: 555 LAASRAVFDRLPRR-NVITWNVLIMAYGMHGLGDEAVALFDEMAAGGEATP-NEVTFIAA 612

Query: 543 SMVCSESG 550
              CS SG
Sbjct: 613 LAACSHSG 620


>gi|449456661|ref|XP_004146067.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Cucumis sativus]
          Length = 793

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 179/536 (33%), Positives = 309/536 (57%), Gaps = 11/536 (2%)

Query: 50  LHCTALKSGSD--ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQN 107
           +H   +K GS+   D  + +S I MYA+    E A ++FD    R+T  WN++I+ F QN
Sbjct: 208 VHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWNTMISAFVQN 267

Query: 108 GFYVRSLEMFREMYLCGFVLKAEL-LAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
            F +  +++F +          E+ L   IS  S + + EL  Q+HA VI + +    V 
Sbjct: 268 NFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVIKNVAVT-QVC 326

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           V  AL+ +YS+C+    + ++F+ M  ++ VSW  MIS  + +   D  + LF  M+++ 
Sbjct: 327 VMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALMLFYEMKKQD 386

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           +    VT+T +L A ++LR+   GK  HGY    G  F+  + + L+ MY + +  +  A
Sbjct: 387 LMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFEG-MDSYLIDMYAK-SGLIEAA 444

Query: 287 RIIFERT--KVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
           + +FE++    +D   W+S++ GY+Q+G + +A  +  +M  +++ PN VTL +IL +C 
Sbjct: 445 QNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLASILPACN 504

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
              ++  G  +H + ++  L+ +V +  AL++MYSK GSI  +  +F++   +  V+++T
Sbjct: 505 PSGYIDWGKQLHGFSIRNDLDQNVFVATALIDMYSKSGSIAHAENVFSKANEKSIVTYST 564

Query: 405 LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK 464
           +I GYG HG GE AL +F  MQ+SG++PDA+T++A+LSAC++AGLV E   +F ++    
Sbjct: 565 MILGYGQHGMGESALFMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQIFESMRTVY 624

Query: 465 KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPST-RILSSLVSACRIHGRLEVAEM 523
            I  + EH+ C  D+LG++G+++ A + V  +  K +   I  SL++ACRIH + E+ ++
Sbjct: 625 NIQPSTEHFCCVADMLGRAGRVDKAYEFVIGLGEKGNVMEIWGSLLAACRIHKQFELGKL 684

Query: 524 LAHQLIEAEPENAAN--YTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +A +L+E E  N     + LLS + +E  NW   + V + MR +GL K  G S IE
Sbjct: 685 VAKKLLEMEKINGKTGYHVLLSNIYAEERNWENVDIVRKQMRERGLKKETGSSWIE 740



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 102/357 (28%), Positives = 188/357 (52%), Gaps = 8/357 (2%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V  +F  + + L+ Q +       +   L S I A ++ Q  +    QLH   +K+ +  
Sbjct: 265 VQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFE-LAEQLHAFVIKNVAVT 323

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
              + N+LI+MY++ +  ++++++FD MP +D +SWN++I+ F QNG    +L +F EM 
Sbjct: 324 QVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALMLFYEMK 383

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDG-SFELSVFVSTALLDLYSKCHH 180
               ++ +  +  ++S  S +   ++G+Q H  ++ +G  FE    + + L+D+Y+K   
Sbjct: 384 KQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFE---GMDSYLIDMYAKSGL 440

Query: 181 WLIALRVFEQMVI--RNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVL 238
              A  VFE+     R++ +W +M+SG   +   D    + R M  + V P  VTL  +L
Sbjct: 441 IEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLASIL 500

Query: 239 LACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDV 298
            AC     +  GK +HG++     D +  ++ AL+ MY +     H A  +F +   K +
Sbjct: 501 PACNPSGYIDWGKQLHGFSIRNDLDQNVFVATALIDMYSKSGSIAH-AENVFSKANEKSI 559

Query: 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV 355
           V +S++I GY Q G    A+ +F RM+   I+P++VTL+A+LS+C+    +  GL +
Sbjct: 560 VTYSTMILGYGQHGMGESALFMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQI 616



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 136/543 (25%), Positives = 263/543 (48%), Gaps = 35/543 (6%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYA-------------KFSK 78
           SV+KACA  + +   G  +H   L+   +   ++ NSL++MY+              +S+
Sbjct: 77  SVLKACADTR-NLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSR 135

Query: 79  PESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISL 138
            +   ++FD M  R  ++WN++I  + +   Y  +++ F  M   G          +   
Sbjct: 136 CDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPA 195

Query: 139 CSQIGELELGRQIHALVIVDGS-FELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197
            S +G+ +    +H +++  GS +   ++V ++ + +Y++      A +VF+  + RN  
Sbjct: 196 FSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTE 255

Query: 198 SWTAMISGCIDSQNYDTGIDL-FRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
            W  MIS  + +     GI L F+A++ E      VTL   + A + L+     + +H +
Sbjct: 256 VWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAF 315

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
                      +  AL+ MY  C  ++  +  IF+    KDVV W+++I  + Q+G   E
Sbjct: 316 VIKNVAVTQVCVMNALIAMYSRCN-SIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDE 374

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
           A+ LF  M+ + +  +SVT+ A+LS+ +       G   H Y+++ G+ F+  + + L++
Sbjct: 375 ALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFE-GMDSYLID 433

Query: 377 MYSKCGSITSSHQIFNEMAA--RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           MY+K G I ++  +F +  +  RD  +W +++SGY  +G  ++A  +  +M +  V P+ 
Sbjct: 434 MYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNV 493

Query: 435 ITVLAILSACNHAGLVKEAETLF-----NNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
           +T+ +IL ACN +G +   + L      N++ +   +A A+      +D+  KSG I  A
Sbjct: 494 VTLASILPACNPSGYIDWGKQLHGFSIRNDLDQNVFVATAL------IDMYSKSGSIAHA 547

Query: 490 CKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLSMVCS 547
             V S    K S    S+++     HG  E A  + H++ ++  +P+      +LS  CS
Sbjct: 548 ENVFSKANEK-SIVTYSTMILGYGQHGMGESALFMFHRMQKSGIQPDAVTLVAVLS-ACS 605

Query: 548 ESG 550
            +G
Sbjct: 606 YAG 608



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 130/494 (26%), Positives = 233/494 (47%), Gaps = 34/494 (6%)

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE--LLAGIISLC 139
           A QLFD +P   T+ WN+II     N F   +L  +  M      +K +    + ++  C
Sbjct: 23  ARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSSVLKAC 82

Query: 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL-------------IALR 186
           +    L +G+ +HA  +       S  V  +LL++YS C                 +  +
Sbjct: 83  ADTRNLVVGKAVHAHFL-RCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCDLVRK 141

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VF+ M  R  V+W  +I+  + ++ Y   +  F  M + G+KP+ V+   V  A + L D
Sbjct: 142 VFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFSSLGD 201

Query: 247 LRNGKAIHGYAYCCGFDF--DHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
            +N   +HG     G ++  D ++ ++ + MY E    L  A+ +F+    ++  +W+++
Sbjct: 202 FKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELG-CLEFAKKVFDNCLERNTEVWNTM 260

Query: 305 IRGYSQSGDLSEAMKLFSR-MRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           I  + Q+    E ++LF + +  E    + VTLL+ +S+ +          +H +++K  
Sbjct: 261 ISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVIKNV 320

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
               V + NAL+ MYS+C SI +S +IF+ M  +D VSW T+IS +  +G  +EAL LF 
Sbjct: 321 AVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALMLFY 380

Query: 424 EMQESGVEPDAITVLAILSACN-----HAGLVKEAETLFNNVMKEKKIALAIEHYACYVD 478
           EM++  +  D++TV A+LSA +       G       L N +  E   +  I+ YA    
Sbjct: 381 EMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFEGMDSYLIDMYA---- 436

Query: 479 LLGKSGKIEDACKVV-STMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEP-ENA 536
              KSG IE A  V   +   +      +S++S    +G ++ A ++  Q+++ +   N 
Sbjct: 437 ---KSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNV 493

Query: 537 ANYTLLSMVCSESG 550
                +   C+ SG
Sbjct: 494 VTLASILPACNPSG 507



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 140/306 (45%), Gaps = 29/306 (9%)

Query: 267 HLSAALMHMYCE-CTEA-LHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM 324
           H+S  L+H  C  C E  LH AR +F+       V+W++II G   +    EA+  +S M
Sbjct: 2   HISINLVHELCRLCQEGQLHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNM 61

Query: 325 RLE--RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCG 382
           +    +++ +S T  ++L +C     L  G  VH + ++  +N    + N+L+NMYS C 
Sbjct: 62  KSSSPQVKCDSYTYSSVLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCS 121

Query: 383 SITSS-------------HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
           S T                ++F+ M  R  V+W TLI+ Y       EA++ F  M + G
Sbjct: 122 STTPDGKMVSGYSRCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIG 181

Query: 430 VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEH------YACYVDLLGKS 483
           ++P  ++ + +  A +  G  K A     NV+    + L  E+       +  + +  + 
Sbjct: 182 IKPSPVSFVNVFPAFSSLGDFKNA-----NVVHGMLVKLGSEYVNDLYVVSSAIFMYAEL 236

Query: 484 GKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLS 543
           G +E A KV     ++ +T + ++++SA   +        L  Q +E+E       TLLS
Sbjct: 237 GCLEFAKKVFDNC-LERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLS 295

Query: 544 MVCSES 549
            + + S
Sbjct: 296 AISAAS 301


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 179/549 (32%), Positives = 305/549 (55%), Gaps = 18/549 (3%)

Query: 42  THQHFGLQLHCTALK-SGSDADPVISNSLISMYAKFSKPESAYQLFDE-MPYRDTISWNS 99
           T QHF +    TA + SG      I    + +  ++S   +   LF++ +   +  SWNS
Sbjct: 64  TAQHFLIFPEHTAFQFSGFSKRRSICAGAV-LRRRYSNNPNLTTLFNKYVDKTNVFSWNS 122

Query: 100 IINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDG 159
           +I    ++G  V +L  F  M               I  CS + +L  GRQ H   ++ G
Sbjct: 123 VIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQALIFG 182

Query: 160 SFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLF 219
            FE  +FVS+AL+D+YSKC     A  +F+++  RN VSWT+MI+G + + +    + LF
Sbjct: 183 -FEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLF 241

Query: 220 RAM-----QREG-----VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS 269
           +         EG     V P  + +  VL AC+ + +    + +HG+    GF+ D  + 
Sbjct: 242 KEFLVEESGSEGDGEVCVDP--IAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVE 299

Query: 270 AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM-RLER 328
             LM  Y +C E L  +R +F+    +DV+ W+SII  Y+Q+G  +E+M++F RM +   
Sbjct: 300 NTLMDAYAKCGE-LGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGE 358

Query: 329 IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSH 388
           I  N+VTL A+L +C        G  +H  ++K GL  +V +G ++++MY KCG +  + 
Sbjct: 359 INYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMAR 418

Query: 389 QIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG 448
           + F+ M  ++  SW+ +++GYG HG+ +EAL++F EM  +GV+P+ IT +++L+AC+HAG
Sbjct: 419 KAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAG 478

Query: 449 LVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSL 508
           L++E    F  +  E  +   +EHY C VDLLG++G +++A  ++  M ++P   +  +L
Sbjct: 479 LLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGAL 538

Query: 509 VSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLS 568
           + ACR+H  +++ E+ A +L E +P+N   Y LLS + +++G W   E +  +M+  GL 
Sbjct: 539 LGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLV 598

Query: 569 KSYGFSRIE 577
           K  GFS ++
Sbjct: 599 KPPGFSLVD 607



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 118/404 (29%), Positives = 204/404 (50%), Gaps = 20/404 (4%)

Query: 23  LYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESA 82
           L  N +  P  IK+C+ A    H G Q H  AL  G + D  +S++L+ MY+K  +   A
Sbjct: 148 LKPNRSTFPCAIKSCS-ALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDA 206

Query: 83  YQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL--CGFVLKAEL------LAG 134
             LFDE+ +R+ +SW S+I  + QN    R+L +F+E  +   G     E+      +  
Sbjct: 207 RTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVS 266

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           ++S CS++ E  +   +H  +I  G FE  + V   L+D Y+KC    ++ RVF+ M  R
Sbjct: 267 VLSACSRVSEKSITEGVHGFLIKRG-FEGDLGVENTLMDAYAKCGELGVSRRVFDGMAER 325

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREG-VKPTRVTLTIVLLACAELRDLRNGKAI 253
           + +SW ++I+    +      +++F  M ++G +    VTL+ VLLACA     R GK I
Sbjct: 326 DVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCI 385

Query: 254 HGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGD 313
           H      G + +  +  +++ MYC+C + +  AR  F+R + K+V  WS+++ GY   G 
Sbjct: 386 HDQVIKMGLESNVFVGTSIIDMYCKCGK-VEMARKAFDRMREKNVKSWSAMVAGYGMHGH 444

Query: 314 LSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG-- 371
             EA+++F  M +  ++PN +T +++L++C+    L  G     +       FDV  G  
Sbjct: 445 AKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWH---WFKAMSHEFDVEPGVE 501

Query: 372 --NALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFH 412
               ++++  + G +  +  +   M  R DFV W  L+     H
Sbjct: 502 HYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMH 545



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 99/208 (47%), Gaps = 2/208 (0%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           +++ ++ + +    +  N   L +V+ ACA++ + Q  G  +H   +K G +++  +  S
Sbjct: 345 ESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGS-QRLGKCIHDQVIKMGLESNVFVGTS 403

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           +I MY K  K E A + FD M  ++  SW++++  +  +G    +LE+F EM + G    
Sbjct: 404 IIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPN 463

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
                 +++ CS  G LE G      +  +   E  V     ++DL  +  +   A  + 
Sbjct: 464 YITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLI 523

Query: 189 EQMVIRNE-VSWTAMISGCIDSQNYDTG 215
           + M +R + V W A++  C   +N D G
Sbjct: 524 KGMKLRPDFVVWGALLGACRMHKNVDLG 551


>gi|297606175|ref|NP_001058069.2| Os06g0613100 [Oryza sativa Japonica Group]
 gi|255677226|dbj|BAF19983.2| Os06g0613100 [Oryza sativa Japonica Group]
          Length = 590

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 161/441 (36%), Positives = 260/441 (58%), Gaps = 3/441 (0%)

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           I+ C +   L  GRQ+HA +I    +  +VF+ T L+ +Y +C     A  V ++M  R+
Sbjct: 17  ITACIERRALWEGRQVHARMIT-ARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERS 75

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
            VSWT MISG   ++ +   +DLF  M R G  P   TL  VL +C+  + +  GK +H 
Sbjct: 76  VVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHS 135

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
                 F+    + ++L+ MY + +E +  AR +F+    +DVV  ++II GY+Q G   
Sbjct: 136 LLVKTNFESHMFVGSSLLDMYAK-SENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDE 194

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           EA+ LF ++  E ++ N VT   ++++ +  + L +G  VH  I++  L F V++ N+L+
Sbjct: 195 EALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLI 254

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           +MYSKCG +  S ++F+ M  R  VSW  ++ GYG HG G E + LF ++ +  V+PD++
Sbjct: 255 DMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSV 313

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           T+LA+LS C+H GLV E   +F+ V+KE+   L   HY C +DLLG+SG++E A  ++  
Sbjct: 314 TLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIEN 373

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGA 555
           MP + +  I  SL+ ACR+H  + V E++A +L+E EPENA NY +LS + + +G W   
Sbjct: 374 MPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDV 433

Query: 556 EEVWRVMRAKGLSKSYGFSRI 576
            +V ++M  K ++K  G S I
Sbjct: 434 FKVRKLMLEKTVTKEPGQSWI 454



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 121/428 (28%), Positives = 213/428 (49%), Gaps = 21/428 (4%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G Q+H   + +       +   L++MY +    + A  + D MP R  +SW ++I+ ++Q
Sbjct: 29  GRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQ 88

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
              +V +L++F +M   G +     LA +++ CS    +  G+Q+H+L +V  +FE  +F
Sbjct: 89  TERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSL-LVKTNFESHMF 147

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           V ++LLD+Y+K  +   A RVF+ +  R+ VS TA+ISG       +  +DLFR +  EG
Sbjct: 148 VGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEG 207

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           ++   VT T ++ A + L  L  GK +H         F   L  +L+ MY +C + L+ +
Sbjct: 208 MQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLY-S 266

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
           R +F+    + VV W++++ GY + G   E + LF  +  E ++P+SVTLLA+LS C+  
Sbjct: 267 RRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVTLLAVLSGCSHG 325

Query: 347 SFLSHGLGVHCYIMK--AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS-WT 403
             +  GL +   ++K  + L      G  ++++  + G +  +  +   M      S W 
Sbjct: 326 GLVDEGLDIFDTVVKEQSALLHTGHYG-CIIDLLGRSGRLEKALNLIENMPFESTPSIWG 384

Query: 404 TLISGYGFHG---YGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNV 460
           +L+     H     GE   Q  LEM     EP+      ILS       +  A  ++ +V
Sbjct: 385 SLLGACRVHANVHVGELVAQKLLEM-----EPENAGNYVILSN------IYAAAGMWKDV 433

Query: 461 MKEKKIAL 468
            K +K+ L
Sbjct: 434 FKVRKLML 441



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 124/224 (55%), Gaps = 7/224 (3%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           +G   N   L +V+ +C+  Q+  + G Q+H   +K+  ++   + +SL+ MYAK    +
Sbjct: 105 AGCIPNEYTLATVLTSCSGPQS-IYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQ 163

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
            A ++FD +P RD +S  +II+ + Q G    +L++FR++Y  G          +++  S
Sbjct: 164 EARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALS 223

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVS--TALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
            +  L+ G+Q+HAL++     EL  FV+   +L+D+YSKC   L + RVF+ M+ R+ VS
Sbjct: 224 GLASLDYGKQVHALILRK---ELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVS 280

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
           W AM+ G          I LF+ + +E VKP  VTL  VL  C+
Sbjct: 281 WNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVTLLAVLSGCS 323



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 84/165 (50%), Gaps = 7/165 (4%)

Query: 338 AILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR 397
           A +++C  +  L  G  VH  ++ A     V +G  L+ MY +CG++  +  + + M  R
Sbjct: 15  AAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPER 74

Query: 398 DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLV---KEAE 454
             VSWTT+ISGY       EAL LF++M  +G  P+  T+  +L++C+    +   K+  
Sbjct: 75  SVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVH 134

Query: 455 TLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           +L      E  + +     +  +D+  KS  I++A +V  T+P +
Sbjct: 135 SLLVKTNFESHMFVG----SSLLDMYAKSENIQEARRVFDTLPER 175


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 171/528 (32%), Positives = 288/528 (54%), Gaps = 2/528 (0%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           LH  A+K G D    + N+L+  Y K     +A ++F EM  +D +++N+++   ++ G 
Sbjct: 157 LHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGL 216

Query: 110 YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVST 169
           + ++L++F  M   G        + I+++ + +  L LG Q+HALV+   S  L+VFV+ 
Sbjct: 217 HTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSV-LNVFVNN 275

Query: 170 ALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKP 229
           +LLD YSKC       R+F++M  R+ VS+  +I+    +Q   T + LFR MQ+ G   
Sbjct: 276 SLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDR 335

Query: 230 TRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARII 289
             +    +L     L D+  GK IH      G   +  L  AL+ MY +C   L  A+  
Sbjct: 336 QVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCG-MLDAAKSN 394

Query: 290 FERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFL 349
           F     K  + W+++I GY Q+G   EA++LFS MR   + P+  T  +I+ + +  + +
Sbjct: 395 FSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMI 454

Query: 350 SHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGY 409
             G  +H Y++++G    V  G+ L++MY+KCG +  + + F+EM  R+ +SW  +IS Y
Sbjct: 455 GLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAY 514

Query: 410 GFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA 469
             +G  + A+++F  M   G  PD++T L++L+AC+H GL  E    F+ +  +  I+  
Sbjct: 515 AHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPW 574

Query: 470 IEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLI 529
            EHYAC +D LG+ G      K++  MP K    I +S++ +CRIHG  E+A + A +L 
Sbjct: 575 KEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLF 634

Query: 530 EAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
             EP +A  Y +LS + + +G W  A  V ++MR +G+ K  G+S +E
Sbjct: 635 GMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVE 682



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 119/424 (28%), Positives = 207/424 (48%), Gaps = 28/424 (6%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPY 91
           S I   A    H   G Q+H   L+S S  +  ++NSL+  Y+K    +   +LFDEMP 
Sbjct: 240 SSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPE 299

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQI 151
           RD +S+N II  +  N      L +FREM   GF  +    A ++S+   + ++ +G+QI
Sbjct: 300 RDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQI 359

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQN 211
           HA +++ G       +  AL+D+YSKC     A   F     ++ +SWTA+I+G + +  
Sbjct: 360 HAQLVLLG-LASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQ 418

Query: 212 YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAA 271
           ++  + LF  M+R G++P R T + ++ A + L  +  G+ +H Y    G+       + 
Sbjct: 419 HEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSV 478

Query: 272 LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP 331
           L+ MY +C   L  A   F+    ++ + W+++I  Y+  G+   A+K+F  M      P
Sbjct: 479 LVDMYAKCG-CLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNP 537

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHC----YIMKAGLNFDVSIGNA----LMNMYSKCGS 383
           +SVT L++L++C+      +GL   C    ++MK    + +S        +++   + G 
Sbjct: 538 DSVTFLSVLAACSH-----NGLADECMKYFHLMKH--QYSISPWKEHYACVIDTLGRVGC 590

Query: 384 ITSSHQIFNEMAAR-DFVSWTTLISGYGFHGYGE----EALQLFLEMQESGVEPDAITVL 438
            +   ++  EM  + D + WT+++     HG  E     A +LF      G+EP   T  
Sbjct: 591 FSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLF------GMEPTDATPY 644

Query: 439 AILS 442
            ILS
Sbjct: 645 VILS 648



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 127/494 (25%), Positives = 235/494 (47%), Gaps = 18/494 (3%)

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           N ++S Y+      +A  LF   P+R+  +W  ++      G    +L +FR M   G +
Sbjct: 78  NLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVI 137

Query: 127 LKAELLAGIISL--CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
                +  +++L  C+          +H   I  G  +  VFV   LLD Y  C H L+A
Sbjct: 138 PDRVTVTTVLNLPGCTV-------PSLHPFAIKFG-LDTHVFVCNTLLDAY--CKHGLLA 187

Query: 185 L--RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
              RVF +M  ++ V++ AM+ GC     +   + LF AM+R G+  T  T + +L   A
Sbjct: 188 AARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAA 247

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
            +  L  G  +H          +  ++ +L+  Y +C + L   R +F+    +D V ++
Sbjct: 248 GMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKC-DCLDDMRRLFDEMPERDNVSYN 306

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
            II  Y+ +   +  ++LF  M+    +   +    +LS       +  G  +H  ++  
Sbjct: 307 VIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLL 366

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
           GL  +  +GNAL++MYSKCG + ++   F+  + +  +SWT LI+GY  +G  EEALQLF
Sbjct: 367 GLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLF 426

Query: 423 LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGK 482
            +M+ +G+ PD  T  +I+ A +   ++     L + +++    + ++   +  VD+  K
Sbjct: 427 SDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKS-SVFSGSVLVDMYAK 485

Query: 483 SGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLL 542
            G +++A +    MP + S    ++++SA   +G  + A  +   ++     N  + T L
Sbjct: 486 CGCLDEALRTFDEMPERNSIS-WNAVISAYAHYGEAKNAIKMFEGMLHCG-FNPDSVTFL 543

Query: 543 SMVCSESGNWLGAE 556
           S++ + S N L  E
Sbjct: 544 SVLAACSHNGLADE 557



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 105/379 (27%), Positives = 169/379 (44%), Gaps = 28/379 (7%)

Query: 119 EMYLCGF-VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSK 177
            M   GF VL   L  G+ SL S  G L   R      + D     ++F    +L  YS 
Sbjct: 33  RMVKTGFDVLTYRLNLGLRSLLSS-GHLHRAR-----AMFDQMPHKNIFSLNLILSAYSS 86

Query: 178 CHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIV 237
                 A  +F     RN  +WT M+     +      + LFRAM  EGV P RVT+T V
Sbjct: 87  SGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTV 146

Query: 238 --LLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV 295
             L  C          ++H +A   G D    +   L+  YC+    L  AR +F     
Sbjct: 147 LNLPGCTV-------PSLHPFAIKFGLDTHVFVCNTLLDAYCK-HGLLAAARRVFLEMHD 198

Query: 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV 355
           KD V +++++ G S+ G  ++A++LF+ MR   I     T  +IL+     + L  G  V
Sbjct: 199 KDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQV 258

Query: 356 HCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYG 415
           H  ++++    +V + N+L++ YSKC  +    ++F+EM  RD VS+  +I+ Y ++   
Sbjct: 259 HALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCA 318

Query: 416 EEALQLFLEMQESGVEPDAITVLAILSACN-----HAGLVKEAETLFNNVMKEKKIALAI 470
              L+LF EMQ+ G +   +    +LS        H G    A+ +   +  E  +  A+
Sbjct: 319 ATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNAL 378

Query: 471 EHYACYVDLLGKSGKIEDA 489
                 +D+  K G ++ A
Sbjct: 379 ------IDMYSKCGMLDAA 391


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 175/532 (32%), Positives = 279/532 (52%), Gaps = 37/532 (6%)

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A  +F+ +   + + WN+++     +   V +LEM+  M   G +  +     ++  C++
Sbjct: 17  AISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAK 76

Query: 142 IGELELGRQIHALV------------------------------IVDGSFELSVFVSTAL 171
               E GRQIHA V                              + D S    V   TAL
Sbjct: 77  SKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTAL 136

Query: 172 LDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTR 231
           +  Y+    +  A +VF+++  R+ VSW AMI+G +++  Y+  ++LF+ M R  V+P  
Sbjct: 137 ITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDE 196

Query: 232 VTLTIVLLACAELRDLRNGKAIHGYAYCC----GFDFDHHLSAALMHMYCECTEALHPAR 287
            TL  V+ ACA+   +  G+ +H +        GF     +  AL+ +Y +C + +  A 
Sbjct: 197 GTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGD-VETAF 255

Query: 288 IIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQS 347
            +FE    KDVV W+++I GY+ +    EA+ LF  M      PN VTLL++L +C    
Sbjct: 256 GLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLG 315

Query: 348 FLSHGLGVHCYIMKA--GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
            +  G  +H YI K   G+  + S+  +L++MY+KCG I ++HQ+FN M  R   SW  +
Sbjct: 316 AIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAM 375

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           I G+  HG    A  LF  M+ + VEPD IT + +LSAC+H+GL+     +F ++ ++  
Sbjct: 376 IFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDYN 435

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
           +   +EHY C +DLLG SG  ++A +++ TMPM+P   I  SL+ AC+ HG LE+AE  A
Sbjct: 436 LTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNLELAESFA 495

Query: 526 HQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +LI+ EPEN+ +Y LLS + + +G W     V  V+  KG+ K  G S IE
Sbjct: 496 QKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSSIE 547



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 129/297 (43%), Gaps = 25/297 (8%)

Query: 5   HFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALK--SGSDAD 62
           + Y++ L L+ QE+  SG   N   L SV+ ACA+       G  +H    K   G   +
Sbjct: 280 NLYKEALLLF-QEMLRSGECPNDVTLLSVLPACAHLGAID-IGRWIHVYIDKKLKGVTNE 337

Query: 63  PVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL 122
             +  SLI MYAK    E+A+Q+F+ M YR   SWN++I  F  +G    + ++F  M  
Sbjct: 338 TSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRG 397

Query: 123 CGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL 182
                      G++S CS  G L+LGRQI   +  D +    +     ++DL      + 
Sbjct: 398 NRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFK 457

Query: 183 IALRVFEQMVIRNE-VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA- 240
            A  +   M +  + V W +++  C    N +      + + +  ++P   + + VLL+ 
Sbjct: 458 EAEEMIHTMPMEPDGVIWCSLLKACKKHGNLELAESFAQKLIK--IEPEN-SGSYVLLSN 514

Query: 241 ----------CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPAR 287
                      A +R + NGK +     C   + D     +++H +    + LHP R
Sbjct: 515 IYATAGRWEDVARVRGVLNGKGMKKVPGCSSIEVD-----SVVHEFI-IGDKLHPRR 565


>gi|449523019|ref|XP_004168522.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17210-like [Cucumis sativus]
          Length = 747

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 170/539 (31%), Positives = 309/539 (57%), Gaps = 18/539 (3%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYR-DTISWNSIINCFT 105
           G   H    +SG  A   + NSL+S+YA+      AY+LF EM  R D +SW+ +I  F 
Sbjct: 167 GFAFHGYIFRSGFSAILSVQNSLLSLYAEVHM-YFAYKLFGEMSVRNDVVSWSVMIGGFV 225

Query: 106 QNGFYVRSLEMFREMYL-CGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELS 164
           Q G   +   MFR M    G       +  ++  C+ + ++ LG  +H LVI  G  E  
Sbjct: 226 QIGEDEQGFLMFRNMVTEAGIPPDGVTVVSVLKACTNLKDISLGTMVHGLVIFRG-LEDD 284

Query: 165 VFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR 224
           +FV  +L+D+YSKC +   A + F+++  +N +SW  M+S  I ++++   + L   M R
Sbjct: 285 LFVGNSLIDMYSKCFNVHSAFKAFKEIPEKNIISWNLMLSAYILNESHLEALALLGTMVR 344

Query: 225 EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
           EG +   VTL  VL       D    +++HG     G++ +  L  +++  Y +C   + 
Sbjct: 345 EGAEKDEVTLANVLQIAKHFLDSLKCRSVHGVIIRKGYESNELLLNSVIDAYAKCN-LVE 403

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
            AR++F+    KDVV WS++I G++++G   EA+ +F +M  E + PN+V+++ ++ +C 
Sbjct: 404 LARMVFDGMNKKDVVAWSTMIAGFARNGKPDEAISVFKQMN-EEVIPNNVSIMNLMEACA 462

Query: 345 -----RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDF 399
                RQS  +HG+ V     + GL  +V+IG ++++MYSKCG I +S + FN++  ++ 
Sbjct: 463 VSAELRQSKWAHGIAV-----RRGLASEVAIGTSIIDMYSKCGDIEASIRAFNQIPQKNV 517

Query: 400 VSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNN 459
           V W+ +IS +  +G   EAL LF +++++G +P+A+T L++LSAC+H GL++E  + F +
Sbjct: 518 VCWSAMISAFRINGLAHEALMLFEKIKQNGTKPNAVTALSLLSACSHGGLIEEGLSFFTS 577

Query: 460 VMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP--MKPSTRILSSLVSACRIHGR 517
           ++++  I   +EHY+C VD+L ++GK  +A +++  +P  M+    I  +L+S+CR +G 
Sbjct: 578 MVQKHGIEPGLEHYSCIVDMLSRAGKFNEALELIEKLPKEMEAGASIWGTLLSSCRSYGN 637

Query: 518 LEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
           + +    A ++++ EP ++A Y L S + +  G  + + ++ R+ + KG+    G+S +
Sbjct: 638 ISLGSGAASRVLQLEPLSSAGYMLASNLYANCGLMIDSAKMRRLAKEKGVKVVAGYSLV 696



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 153/551 (27%), Positives = 277/551 (50%), Gaps = 19/551 (3%)

Query: 7   YEQTLHLYKQELHPSGL-YSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           +++ L LY  E+  SG   S+T +LPS++KAC+   T  + G  +H   +K G  +   I
Sbjct: 28  WQEALQLY-HEIRISGAQLSDTWVLPSILKACS--NTSFNLGTAMHGCLIKQGCQSSTSI 84

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
           +NS I  Y K+   +SA + FD    +D++SWN +++    NG  +  L  F +     F
Sbjct: 85  ANSTIDFYMKYGDLDSAQRAFDSTKNKDSVSWNVMVHGNFSNGSIMAGLCWFIKGRFAHF 144

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
                 L  +I    ++     G   H  +   G F   + V  +LL LY++ H +  A 
Sbjct: 145 QPNISSLLLVIQAFRELKIYSQGFAFHGYIFRSG-FSAILSVQNSLLSLYAEVHMYF-AY 202

Query: 186 RVFEQMVIRNE-VSWTAMISGCIDSQNYDTGIDLFRAMQRE-GVKPTRVTLTIVLLACAE 243
           ++F +M +RN+ VSW+ MI G +     + G  +FR M  E G+ P  VT+  VL AC  
Sbjct: 203 KLFGEMSVRNDVVSWSVMIGGFVQIGEDEQGFLMFRNMVTEAGIPPDGVTVVSVLKACTN 262

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
           L+D+  G  +HG     G + D  +  +L+ MY +C   +H A   F+    K+++ W+ 
Sbjct: 263 LKDISLGTMVHGLVIFRGLEDDLFVGNSLIDMYSKCFN-VHSAFKAFKEIPEKNIISWNL 321

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLS--HGLGVHCYIMK 361
           ++  Y  +    EA+ L   M  E  E + VTL  +L     + FL       VH  I++
Sbjct: 322 MLSAYILNESHLEALALLGTMVREGAEKDEVTLANVLQ--IAKHFLDSLKCRSVHGVIIR 379

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
            G   +  + N++++ Y+KC  +  +  +F+ M  +D V+W+T+I+G+  +G  +EA+ +
Sbjct: 380 KGYESNELLLNSVIDAYAKCNLVELARMVFDGMNKKDVVAWSTMIAGFARNGKPDEAISV 439

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
           F +M E  V P+ ++++ ++ AC  +  +++++   + +   + +A  +      +D+  
Sbjct: 440 FKQMNEE-VIPNNVSIMNLMEACAVSAELRQSKWA-HGIAVRRGLASEVAIGTSIIDMYS 497

Query: 482 KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE--AEPENAANY 539
           K G IE + +  + +P K +    S+++SA RI+G    A ML  ++ +   +P      
Sbjct: 498 KCGDIEASIRAFNQIPQK-NVVCWSAMISAFRINGLAHEALMLFEKIKQNGTKPNAVTAL 556

Query: 540 TLLSMVCSESG 550
           +LLS  CS  G
Sbjct: 557 SLLS-ACSHGG 566



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 123/241 (51%), Gaps = 6/241 (2%)

Query: 209 SQNYDTGIDLFRAMQREGVKPTRV-TLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
           S N+   + L+  ++  G + +    L  +L AC+       G A+HG     G      
Sbjct: 25  SGNWQEALQLYHEIRISGAQLSDTWVLPSILKACSN-TSFNLGTAMHGCLIKQGCQSSTS 83

Query: 268 LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
           ++ + +  Y +  + L  A+  F+ TK KD V W+ ++ G   +G +   +  F + R  
Sbjct: 84  IANSTIDFYMKYGD-LDSAQRAFDSTKNKDSVSWNVMVHGNFSNGSIMAGLCWFIKGRFA 142

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
             +PN  +LL ++ +       S G   H YI ++G +  +S+ N+L+++Y++   +  +
Sbjct: 143 HFQPNISSLLLVIQAFRELKIYSQGFAFHGYIFRSGFSAILSVQNSLLSLYAEV-HMYFA 201

Query: 388 HQIFNEMAAR-DFVSWTTLISGYGFHGYGEEALQLFLEM-QESGVEPDAITVLAILSACN 445
           +++F EM+ R D VSW+ +I G+   G  E+   +F  M  E+G+ PD +TV+++L AC 
Sbjct: 202 YKLFGEMSVRNDVVSWSVMIGGFVQIGEDEQGFLMFRNMVTEAGIPPDGVTVVSVLKACT 261

Query: 446 H 446
           +
Sbjct: 262 N 262



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 76/142 (53%), Gaps = 2/142 (1%)

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIE-PNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           S I+  S SG+  EA++L+  +R+   +  ++  L +IL +C+  SF + G  +H  ++K
Sbjct: 17  SKIKDASYSGNWQEALQLYHEIRISGAQLSDTWVLPSILKACSNTSF-NLGTAMHGCLIK 75

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
            G     SI N+ ++ Y K G + S+ + F+    +D VSW  ++ G   +G     L  
Sbjct: 76  QGCQSSTSIANSTIDFYMKYGDLDSAQRAFDSTKNKDSVSWNVMVHGNFSNGSIMAGLCW 135

Query: 422 FLEMQESGVEPDAITVLAILSA 443
           F++ + +  +P+  ++L ++ A
Sbjct: 136 FIKGRFAHFQPNISSLLLVIQA 157


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  305 bits (782), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 166/467 (35%), Positives = 267/467 (57%), Gaps = 3/467 (0%)

Query: 110 YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVST 169
           +V  L     M L G   +       I+ C +   L  GRQ+HA +I    +  +VF+ T
Sbjct: 23  FVAPLRAASGMALPGASARFHEYEAAITACIERRALWEGRQVHARMIT-ARYRPAVFLGT 81

Query: 170 ALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKP 229
            L+ +Y +C     A  V ++M  R+ VSWT MISG   ++ +   +DLF  M R G  P
Sbjct: 82  RLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIP 141

Query: 230 TRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARII 289
              TL  VL +C+  + +  GK +H       F+    + ++L+ MY + +E +  AR +
Sbjct: 142 NEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAK-SENIQEARRV 200

Query: 290 FERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFL 349
           F+    +DVV  ++II GY+Q G   EA+ LF ++  E ++ N VT   ++++ +  + L
Sbjct: 201 FDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASL 260

Query: 350 SHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGY 409
            +G  VH  I++  L F V++ N+L++MYSKCG +  S ++F+ M  R  VSW  ++ GY
Sbjct: 261 DYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGY 320

Query: 410 GFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA 469
           G HG G E + LF ++ +  V+PD++T+LA+LS C+H GLV E   +F+ V+KE+   L 
Sbjct: 321 GRHGLGHEVISLFKDLHKE-VKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLH 379

Query: 470 IEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLI 529
             HY C +DLLG+SG++E A  ++  MP + +  I  SL+ ACR+H  + V E++A +L+
Sbjct: 380 TGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLL 439

Query: 530 EAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
           E EPENA NY +LS + + +G W    +V ++M  K ++K  G S I
Sbjct: 440 EMEPENAGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWI 486



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 121/428 (28%), Positives = 213/428 (49%), Gaps = 21/428 (4%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G Q+H   + +       +   L++MY +    + A  + D MP R  +SW ++I+ ++Q
Sbjct: 61  GRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQ 120

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
              +V +L++F +M   G +     LA +++ CS    +  G+Q+H+L +V  +FE  +F
Sbjct: 121 TERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSL-LVKTNFESHMF 179

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           V ++LLD+Y+K  +   A RVF+ +  R+ VS TA+ISG       +  +DLFR +  EG
Sbjct: 180 VGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEG 239

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           ++   VT T ++ A + L  L  GK +H         F   L  +L+ MY +C + L+ +
Sbjct: 240 MQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLY-S 298

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
           R +F+    + VV W++++ GY + G   E + LF  +  E ++P+SVTLLA+LS C+  
Sbjct: 299 RRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVTLLAVLSGCSHG 357

Query: 347 SFLSHGLGVHCYIMK--AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS-WT 403
             +  GL +   ++K  + L      G  ++++  + G +  +  +   M      S W 
Sbjct: 358 GLVDEGLDIFDTVVKEQSALLHTGHYG-CIIDLLGRSGRLEKALNLIENMPFESTPSIWG 416

Query: 404 TLISGYGFHG---YGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNV 460
           +L+     H     GE   Q  LEM     EP+      ILS       +  A  ++ +V
Sbjct: 417 SLLGACRVHANVHVGELVAQKLLEM-----EPENAGNYVILSN------IYAAAGMWKDV 465

Query: 461 MKEKKIAL 468
            K +K+ L
Sbjct: 466 FKVRKLML 473



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 124/224 (55%), Gaps = 7/224 (3%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           +G   N   L +V+ +C+  Q+  + G Q+H   +K+  ++   + +SL+ MYAK    +
Sbjct: 137 AGCIPNEYTLATVLTSCSGPQS-IYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQ 195

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
            A ++FD +P RD +S  +II+ + Q G    +L++FR++Y  G          +++  S
Sbjct: 196 EARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALS 255

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVS--TALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
            +  L+ G+Q+HAL++     EL  FV+   +L+D+YSKC   L + RVF+ M+ R+ VS
Sbjct: 256 GLASLDYGKQVHALILRK---ELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVS 312

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
           W AM+ G          I LF+ + +E VKP  VTL  VL  C+
Sbjct: 313 WNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVTLLAVLSGCS 355


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 161/441 (36%), Positives = 260/441 (58%), Gaps = 3/441 (0%)

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           I+ C +   L  GRQ+HA +I    +  +VF+ T L+ +Y +C     A  V ++M  R+
Sbjct: 17  ITACIERRALWEGRQVHARMIT-ARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERS 75

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
            VSWT MISG   ++ +   +DLF  M R G  P   TL  VL +C+  + +  GK +H 
Sbjct: 76  VVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHS 135

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
                 F+    + ++L+ MY + +E +  AR +F+    +DVV  ++II GY+Q G   
Sbjct: 136 LLVKTNFESHMFVGSSLLDMYAK-SENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDE 194

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           EA+ LF ++  E ++ N VT   ++++ +  + L +G  VH  I++  L F V++ N+L+
Sbjct: 195 EALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLI 254

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           +MYSKCG +  S ++F+ M  R  VSW  ++ GYG HG G E + LF ++ +  V+PD++
Sbjct: 255 DMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSV 313

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           T+LA+LS C+H GLV E   +F+ V+KE+   L   HY C +DLLG+SG++E A  ++  
Sbjct: 314 TLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIEN 373

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGA 555
           MP + +  I  SL+ ACR+H  + V E++A +L+E EPENA NY +LS + + +G W   
Sbjct: 374 MPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDV 433

Query: 556 EEVWRVMRAKGLSKSYGFSRI 576
            +V ++M  K ++K  G S I
Sbjct: 434 FKVRKLMLEKTVTKEPGQSWI 454



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 121/428 (28%), Positives = 213/428 (49%), Gaps = 21/428 (4%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G Q+H   + +       +   L++MY +    + A  + D MP R  +SW ++I+ ++Q
Sbjct: 29  GRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQ 88

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
              +V +L++F +M   G +     LA +++ CS    +  G+Q+H+L +V  +FE  +F
Sbjct: 89  TERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSL-LVKTNFESHMF 147

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           V ++LLD+Y+K  +   A RVF+ +  R+ VS TA+ISG       +  +DLFR +  EG
Sbjct: 148 VGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEG 207

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           ++   VT T ++ A + L  L  GK +H         F   L  +L+ MY +C + L+ +
Sbjct: 208 MQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLY-S 266

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
           R +F+    + VV W++++ GY + G   E + LF  +  E ++P+SVTLLA+LS C+  
Sbjct: 267 RRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVTLLAVLSGCSHG 325

Query: 347 SFLSHGLGVHCYIMK--AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS-WT 403
             +  GL +   ++K  + L      G  ++++  + G +  +  +   M      S W 
Sbjct: 326 GLVDEGLDIFDTVVKEQSALLHTGHYG-CIIDLLGRSGRLEKALNLIENMPFESTPSIWG 384

Query: 404 TLISGYGFHG---YGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNV 460
           +L+     H     GE   Q  LEM     EP+      ILS       +  A  ++ +V
Sbjct: 385 SLLGACRVHANVHVGELVAQKLLEM-----EPENAGNYVILSN------IYAAAGMWKDV 433

Query: 461 MKEKKIAL 468
            K +K+ L
Sbjct: 434 FKVRKLML 441



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 124/224 (55%), Gaps = 7/224 (3%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           +G   N   L +V+ +C+  Q+  + G Q+H   +K+  ++   + +SL+ MYAK    +
Sbjct: 105 AGCIPNEYTLATVLTSCSGPQS-IYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQ 163

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
            A ++FD +P RD +S  +II+ + Q G    +L++FR++Y  G          +++  S
Sbjct: 164 EARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALS 223

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVS--TALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
            +  L+ G+Q+HAL++     EL  FV+   +L+D+YSKC   L + RVF+ M+ R+ VS
Sbjct: 224 GLASLDYGKQVHALILRK---ELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVS 280

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
           W AM+ G          I LF+ + +E VKP  VTL  VL  C+
Sbjct: 281 WNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVTLLAVLSGCS 323



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 105/216 (48%), Gaps = 9/216 (4%)

Query: 338 AILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR 397
           A +++C  +  L  G  VH  ++ A     V +G  L+ MY +CG++  +  + + M  R
Sbjct: 15  AAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPER 74

Query: 398 DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLV---KEAE 454
             VSWTT+ISGY       EAL LF++M  +G  P+  T+  +L++C+    +   K+  
Sbjct: 75  SVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVH 134

Query: 455 TLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRI 514
           +L      E  + +     +  +D+  KS  I++A +V  T+P +      ++++S    
Sbjct: 135 SLLVKTNFESHMFVG----SSLLDMYAKSENIQEARRVFDTLPERDVVSC-TAIISGYAQ 189

Query: 515 HGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESG 550
            G  E A  L  QL  +E     + T  ++V + SG
Sbjct: 190 KGLDEEALDLFRQLY-SEGMQCNHVTFTTLVTALSG 224


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 175/575 (30%), Positives = 302/575 (52%), Gaps = 7/575 (1%)

Query: 7   YEQTLHLYKQELHPSG-LYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADP-- 63
           +++   L++Q    S     +     +++  C  A      G Q+H  A+K G D +P  
Sbjct: 126 FDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVG-QVHAFAVKLGFDTNPFL 184

Query: 64  VISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC 123
            +SN L+  Y +  + + A  LF+E+P +D++++N++I  + ++G Y  S+ +F +M   
Sbjct: 185 TVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQS 244

Query: 124 GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
           G        +G++     + +  LG+Q+HAL +  G F     V   +LD YSK    L 
Sbjct: 245 GHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTG-FSRDASVGNQILDFYSKHDRVLE 303

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
              +F++M   + VS+  +IS    +  Y+  +  FR MQ  G          +L   A 
Sbjct: 304 TRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAAN 363

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
           L  L+ G+ +H  A     D   H+  +L+ MY +C E    A +IF+    +  V W++
Sbjct: 364 LSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKC-EMFEEAELIFKSLPQRTTVSWTA 422

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           +I GY Q G     +KLF++MR   +  +  T   +L +    + L  G  +H +I+++G
Sbjct: 423 LISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSG 482

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
              +V  G+ L++MY+KCGSI  + Q+F EM  R+ VSW  LIS +  +G GE A+  F 
Sbjct: 483 NLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFA 542

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS 483
           +M ESG++PD++++L +L+AC+H G V++    F  +     I    +HYAC +DLLG++
Sbjct: 543 KMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRN 602

Query: 484 GKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEP-ENAANYTLL 542
           G+  +A K++  MP +P   + SS+++ACRIH    +AE  A +L   E   +AA Y  +
Sbjct: 603 GRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSM 662

Query: 543 SMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           S + + +G W    +V + MR +G+ K   +S +E
Sbjct: 663 SNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVE 697



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 141/532 (26%), Positives = 243/532 (45%), Gaps = 30/532 (5%)

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM- 120
           + V +N++IS + K     SA  LFD MP R  ++W  ++  + +N  +  + ++FR+M 
Sbjct: 78  NTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMC 137

Query: 121 -----YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF--VSTALLD 173
                 L   V    LL G    C+         Q+HA  +  G F+ + F  VS  LL 
Sbjct: 138 RSSSCTLPDHVTFTTLLPG----CNDAVPQNAVGQVHAFAVKLG-FDTNPFLTVSNVLLK 192

Query: 174 LYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVT 233
            Y +     +A  +FE++  ++ V++  +I+G      Y   I LF  M++ G +P+  T
Sbjct: 193 SYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFT 252

Query: 234 LTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERT 293
            + VL A   L D   G+ +H  +   GF  D  +   ++  Y +    L   R++F+  
Sbjct: 253 FSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLE-TRMLFDEM 311

Query: 294 KVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGL 353
              D V ++ +I  YSQ+     ++  F  M+    +  +     +LS     S L  G 
Sbjct: 312 PELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGR 371

Query: 354 GVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGY---G 410
            +HC  + A  +  + +GN+L++MY+KC     +  IF  +  R  VSWT LISGY   G
Sbjct: 372 QLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKG 431

Query: 411 FHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAI 470
            HG G   L+LF +M+ S +  D  T   +L A      +   + L   +++   +    
Sbjct: 432 LHGAG---LKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVF 488

Query: 471 EHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE 530
              +  VD+  K G I+DA +V   MP + +    ++L+SA   +G  E A     ++IE
Sbjct: 489 SG-SGLVDMYAKCGSIKDAVQVFEEMPDRNAVS-WNALISAHADNGDGEAAIGAFAKMIE 546

Query: 531 A--EPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIENEY 580
           +  +P++ +   +L+  CS  G      E ++ M     S  YG +  +  Y
Sbjct: 547 SGLQPDSVSILGVLT-ACSHCGFVEQGTEYFQAM-----SPIYGITPKKKHY 592


>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 183/576 (31%), Positives = 305/576 (52%), Gaps = 4/576 (0%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V    + + L L+K  L   G+  + +   SV ++CA     +  G QLH  ALKS    
Sbjct: 215 VQNDRFIEGLKLFKDMLK-VGMGVSQSTYASVFRSCAGLSAFK-LGTQLHGHALKSDFAY 272

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D +I  + + MYAK  +   A+++F+ +P     S+N+II  + +    +++L++F+ + 
Sbjct: 273 DSIIGTATLDMYAKCERMFDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALDIFQSLQ 332

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
                     L+G ++ CS I     G Q+H L +  G    ++ V+  +LD+Y KC   
Sbjct: 333 RNNLGFDEISLSGALTACSVIKRHLEGIQLHGLAVKCG-LGFNICVANTILDMYGKCGAL 391

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
           + A  +FE+M  R+ VSW A+I+    ++     + LF +M R  ++P   T   V+ AC
Sbjct: 392 MEACLIFEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKAC 451

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A  + L  G  IHG     G   D  + +AL+ MY +C   L  A  I  R + K  V W
Sbjct: 452 AGQQALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCG-MLMEAEKIHARLEEKTTVSW 510

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           +SII G+S       A + FS+M    I P++ T   +L  C   + +  G  +H  I+K
Sbjct: 511 NSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDVCANMATIELGKQIHAQILK 570

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
             L+ DV I + L++MYSKCG++  S  +F +   RD+V+W+ +I  Y +HG GE+A+ L
Sbjct: 571 LQLHSDVYIASTLVDMYSKCGNMQDSRLMFEKAPKRDYVTWSAMICAYAYHGLGEKAINL 630

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
           F EMQ   V+P+    +++L AC H G V +    F  ++    +   +EHY+C VDLLG
Sbjct: 631 FEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQKMLSHYGLDPQMEHYSCMVDLLG 690

Query: 482 KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTL 541
           +SG++ +A K++ +MP +    I  +L+S C++ G +EVAE   + L++ +P++++ Y L
Sbjct: 691 RSGQVNEALKLIESMPFEADDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQDSSAYVL 750

Query: 542 LSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           L+ V +  G W    ++  +M+   L K  G S IE
Sbjct: 751 LANVYAIVGMWGEVAKMRSIMKNCKLKKEPGCSWIE 786



 Score =  249 bits (635), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 147/529 (27%), Positives = 273/529 (51%), Gaps = 12/529 (2%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           + A    ++KAC+  + +   GLQ+HC A++ G + D V  ++L+ MY+K  K + A+++
Sbjct: 137 DYATFAVILKACSGIEDYG-LGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDDAFRV 195

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL 145
           F EMP R+ + W+++I  + QN  ++  L++F++M   G  +     A +   C+ +   
Sbjct: 196 FREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAF 255

Query: 146 ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISG 205
           +LG Q+H   +    F     + TA LD+Y+KC     A +VF  +      S+ A+I G
Sbjct: 256 KLGTQLHGHAL-KSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPPRQSYNAIIVG 314

Query: 206 CIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFD 265
                     +D+F+++QR  +    ++L+  L AC+ ++    G  +HG A  CG  F+
Sbjct: 315 YARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQLHGLAVKCGLGFN 374

Query: 266 HHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR 325
             ++  ++ MY +C  AL  A +IFE  + +D V W++II  + Q+ ++ + + LF  M 
Sbjct: 375 ICVANTILDMYGKCG-ALMEACLIFEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSML 433

Query: 326 LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSIT 385
              +EP+  T  +++ +C  Q  L++G  +H  I+K+G+  D  +G+AL++MY KCG + 
Sbjct: 434 RSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLM 493

Query: 386 SSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
            + +I   +  +  VSW ++ISG+      E A + F +M E G+ PD  T   +L  C 
Sbjct: 494 EAEKIHARLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDVCA 553

Query: 446 HAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDACKVVSTMPMKPSTR 503
           +   ++  + +   ++   K+ L  + Y  +  VD+  K G ++D+  +    P K    
Sbjct: 554 NMATIELGKQIHAQIL---KLQLHSDVYIASTLVDMYSKCGNMQDSRLMFEKAP-KRDYV 609

Query: 504 ILSSLVSACRIHGRLEVAEMLAH--QLIEAEPENAANYTLLSMVCSESG 550
             S+++ A   HG  E A  L    QL+  +P +    ++L   C+  G
Sbjct: 610 TWSAMICAYAYHGLGEKAINLFEEMQLLNVKPNHTIFISVLR-ACAHMG 657



 Score =  225 bits (573), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 146/490 (29%), Positives = 250/490 (51%), Gaps = 11/490 (2%)

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D +  N+LI  YA       A  LFD MP RD +SWNS+++C+  NG   +S+E+F  M 
Sbjct: 71  DVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMR 130

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
                      A I+  CS I +  LG Q+H L I  G FE  V   +AL+D+YSKC   
Sbjct: 131 SLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMG-FENDVVTGSALVDMYSKCKKL 189

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             A RVF +M  RN V W+A+I+G + +  +  G+ LF+ M + G+  ++ T   V  +C
Sbjct: 190 DDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSC 249

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A L   + G  +HG+A    F +D  +  A + MY +C E +  A  +F          +
Sbjct: 250 AGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKC-ERMFDAWKVFNTLPNPPRQSY 308

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           ++II GY++     +A+ +F  ++   +  + ++L   L++C+       G+ +H   +K
Sbjct: 309 NAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQLHGLAVK 368

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
            GL F++ + N +++MY KCG++  +  IF EM  RD VSW  +I+ +  +    + L L
Sbjct: 369 CGLGFNICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNEEIVKTLSL 428

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDL 479
           F+ M  S +EPD  T  +++ AC     +     +   ++K     + ++ +  +  VD+
Sbjct: 429 FVSMLRSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKS---GMGLDWFVGSALVDM 485

Query: 480 LGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE--PENAA 537
            GK G + +A K+ + +  K +T   +S++S      + E A+    Q++E    P+N  
Sbjct: 486 YGKCGMLMEAEKIHARLEEK-TTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYT 544

Query: 538 NYTLLSMVCS 547
             T+L  VC+
Sbjct: 545 YATVLD-VCA 553



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/399 (25%), Positives = 179/399 (44%), Gaps = 34/399 (8%)

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           I+  CS +  L  G+Q+H  +IV G F  +++V+  LL  Y K      A +VF++M  R
Sbjct: 12  ILQKCSNLKALNPGKQVHTQMIVTG-FVPTIYVANCLLQFYCKSSKMNYAFKVFDRMPQR 70

Query: 195 NEVSWTAMISGCIDSQN-------YDT------------------------GIDLFRAMQ 223
           + +SW  +I G     N       +D+                         I++F  M+
Sbjct: 71  DVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMR 130

Query: 224 REGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEAL 283
              +     T  ++L AC+ + D   G  +H  A   GF+ D    +AL+ MY +C + L
Sbjct: 131 SLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKK-L 189

Query: 284 HPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC 343
             A  +F     +++V WS++I GY Q+    E +KLF  M    +  +  T  ++  SC
Sbjct: 190 DDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSC 249

Query: 344 TRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWT 403
              S    G  +H + +K+   +D  IG A ++MY+KC  +  + ++FN +      S+ 
Sbjct: 250 AGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPPRQSYN 309

Query: 404 TLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKE 463
            +I GY     G +AL +F  +Q + +  D I++   L+AC+      E   L    +K 
Sbjct: 310 AIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQLHGLAVK- 368

Query: 464 KKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPST 502
             +   I      +D+ GK G + +AC +   M  + + 
Sbjct: 369 CGLGFNICVANTILDMYGKCGALMEACLIFEEMERRDAV 407



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 80/198 (40%), Gaps = 38/198 (19%)

Query: 334 VTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNE 393
           +T   IL  C+    L+ G  VH  ++  G    + + N L+  Y K   +  + ++F+ 
Sbjct: 7   LTFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFDR 66

Query: 394 MAARDFVSWTTLISGY------GF-------------------------HGYGEEALQLF 422
           M  RD +SW TLI GY      GF                         +G   +++++F
Sbjct: 67  MPQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIF 126

Query: 423 LEMQESGVEPDAITVLAILSACN---HAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479
           + M+   +  D  T   IL AC+     GL  +   L   +  E  +       +  VD+
Sbjct: 127 VRMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTG----SALVDM 182

Query: 480 LGKSGKIEDACKVVSTMP 497
             K  K++DA +V   MP
Sbjct: 183 YSKCKKLDDAFRVFREMP 200


>gi|297833250|ref|XP_002884507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330347|gb|EFH60766.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 676

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 181/557 (32%), Positives = 295/557 (52%), Gaps = 13/557 (2%)

Query: 33  VIKACAYAQTHQHFGLQLHCTALKSGSDADPV----------ISNSLISMYAKFSKPESA 82
           ++  C       + G  LH + +K+    DPV          + NSL+S+Y K  K   A
Sbjct: 50  LLSICGREGWFPYLGPCLHASIVKNPEFFDPVDADIHRNALVVWNSLLSLYVKCGKLGDA 109

Query: 83  YQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQI 142
            +LFDEMP RD IS N +   F +N        + + M   G   +A L   ++S+C   
Sbjct: 110 LKLFDEMPVRDVISQNIVFYGFLRNRETESGFVLLKRMLGSGGFDQATLTI-VLSVCDTP 168

Query: 143 GELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAM 202
               + + IHAL I+ G ++  + V   L+  Y KC   +    VF +M  RN ++WTA+
Sbjct: 169 EFCLVTKMIHALAILSG-YDKEISVGNKLITSYFKCGCSVSGRWVFSEMAHRNVITWTAV 227

Query: 203 ISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGF 262
           ISG I+++ ++ G+ LF  M+R  V P  VT    L AC+  + +  G+ IH   +  G 
Sbjct: 228 ISGLIENELHEDGLRLFCLMRRGLVHPNSVTYLSALAACSGSQMIVEGQQIHALLWKFGI 287

Query: 263 DFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFS 322
           + +  + +ALM MY +C  ++  A  IFE ++  D V  + I+ G +Q+G   EA++ F 
Sbjct: 288 ESELCIESALMDMYSKCG-SIEDAWKIFESSQEVDEVSMTVILVGLAQNGSEEEAIQFFI 346

Query: 323 RMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCG 382
           RM    +E ++  + AIL      + L  G  +H  ++K     +  + N L+NMYSKCG
Sbjct: 347 RMLQAGVEIDANVVSAILGVSFVDNSLGLGKQLHSLVIKRKFCGNTFVNNGLINMYSKCG 406

Query: 383 SITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILS 442
            +T S  +F  M  R++VSW ++I+ +  HG+G  AL+L+ EM    V+P  +T L++L 
Sbjct: 407 DLTDSQTVFRRMPKRNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLH 466

Query: 443 ACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPST 502
           AC+H GL+ +   L N + +   I    EHY C +D+LG++G +++A   + ++P+KP  
Sbjct: 467 ACSHVGLIDKGRELLNEMKEVHGIKPRTEHYTCIIDMLGRAGLMKEAKSFIDSLPLKPDC 526

Query: 503 RILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVM 562
           +I  +L+ AC  HG  EV E  A QL E  P+++A + L++ + S  G W    +  + M
Sbjct: 527 KIWQALLGACSFHGDTEVGEYAAEQLFETAPDSSAAHILMANIYSSRGKWKERAKTIKRM 586

Query: 563 RAKGLSKSYGFSRIENE 579
           +  G++K  G S IE E
Sbjct: 587 KEMGVTKETGISWIEME 603



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 59/120 (49%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPY 91
           S I   ++       G QLH   +K     +  ++N LI+MY+K      +  +F  MP 
Sbjct: 361 SAILGVSFVDNSLGLGKQLHSLVIKRKFCGNTFVNNGLINMYSKCGDLTDSQTVFRRMPK 420

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQI 151
           R+ +SWNS+I  F ++G  + +L+++ EM              ++  CS +G ++ GR++
Sbjct: 421 RNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLHACSHVGLIDKGREL 480


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  305 bits (781), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 189/576 (32%), Positives = 300/576 (52%), Gaps = 66/576 (11%)

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           N+++S Y+K    +S  + FD++P RD++SW ++I  +   G Y +++ +  +M   G  
Sbjct: 84  NTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIE 143

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
                L  +++  +    +E G+++H+ ++  G    +V VS +LL++Y+KC   ++A  
Sbjct: 144 PTQFTLTNVLASVAATRCMETGKKVHSFIVKLG-LRGNVSVSNSLLNMYAKCGDPMMAKF 202

Query: 187 VFEQMVIRNEVSWTAMIS-----GCID-------------------------SQNYD-TG 215
           VF++MV+R+  SW AMI+     G +D                          + YD   
Sbjct: 203 VFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRA 262

Query: 216 IDLFRAMQREGV-KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMH 274
           +D+F  M R+ +  P R TL  VL ACA L  L  GK IH +    GFD    +  AL+ 
Sbjct: 263 LDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALIS 322

Query: 275 MYCECTEA--------------------------------LHPARIIFERTKVKDVVIWS 302
           MY  C                                   ++ A+ IF   K +DVV W+
Sbjct: 323 MYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWT 382

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
           ++I GY Q G   EA+ LF  M      PNS TL A+LS  +  + LSHG  +H   +K+
Sbjct: 383 AMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKS 442

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEM-AARDFVSWTTLISGYGFHGYGEEALQL 421
           G  + VS+ NAL+ MY+K G+ITS+ + F+ +   RD VSWT++I     HG+ EEAL+L
Sbjct: 443 GEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALEL 502

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
           F  M   G+ PD IT + + SAC HAGLV +    F+ +    KI   + HYAC VDL G
Sbjct: 503 FETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFG 562

Query: 482 KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTL 541
           ++G +++A + +  MP++P      SL+SACR+H  +++ ++ A +L+  EPEN+  Y+ 
Sbjct: 563 RAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSA 622

Query: 542 LSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           L+ + S  G W  A ++ + M+   + K  GFS IE
Sbjct: 623 LANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIE 658



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 120/469 (25%), Positives = 206/469 (43%), Gaps = 68/469 (14%)

Query: 148 GRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCI 207
           G  +HA  + D     + F    +L  YSK          F+Q+  R+ VSWT MI G  
Sbjct: 63  GYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYK 122

Query: 208 DSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
           +   Y   I +   M +EG++PT+ TLT VL + A  R +  GK +H +    G   +  
Sbjct: 123 NIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVS 182

Query: 268 LSAALMHMYCECTEALHPARIIFERTKV-------------------------------K 296
           +S +L++MY +C + +  A+ +F+R  V                               +
Sbjct: 183 VSNSLLNMYAKCGDPMM-AKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAER 241

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRM-RLERIEPNSVTLLAILSSCTRQSFLSHGLGV 355
           D+V W+S+I G++Q G    A+ +FS+M R   + P+  TL ++LS+C     L  G  +
Sbjct: 242 DIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQI 301

Query: 356 HCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ-------------------------- 389
           H +I+  G +    + NAL++MYS+CG + ++ +                          
Sbjct: 302 HSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLG 361

Query: 390 -------IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILS 442
                  IF  +  RD V+WT +I GY  HG   EA+ LF  M   G  P++ T+ A+LS
Sbjct: 362 DMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLS 421

Query: 443 ACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPST 502
             +    +   + +  + +K  +I  ++      + +  K+G I  A +    +  +  T
Sbjct: 422 VASSLASLSHGKQIHGSAVKSGEI-YSVSVSNALITMYAKAGNITSASRAFDLIRCERDT 480

Query: 503 RILSSLVSACRIHGRLEVA-EMLAHQLIEAEPENAANYTLLSMVCSESG 550
              +S++ A   HG  E A E+    L+E    +   Y  +   C+ +G
Sbjct: 481 VSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAG 529



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 147/555 (26%), Positives = 240/555 (43%), Gaps = 119/555 (21%)

Query: 13  LYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISM 72
           + K+ + P+  ++ T +L SV      A      G ++H   +K G   +  +SNSL++M
Sbjct: 137 MVKEGIEPTQ-FTLTNVLASVA-----ATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNM 190

Query: 73  YAKFSKPESAYQLFD-------------------------------EMPYRDTISWNSII 101
           YAK   P  A  +FD                               +M  RD ++WNS+I
Sbjct: 191 YAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMI 250

Query: 102 NCFTQNGFYVRSLEMFREMYLCGFVLKAEL-LAGIISLCSQIGELELGRQIHALVIVDGS 160
           + F Q G+ +R+L++F +M     +      LA ++S C+ + +L +G+QIH+ ++  G 
Sbjct: 251 SGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTG- 309

Query: 161 FELSVFVSTALLDLYSKCHHWLIALRVFEQ------------------------------ 190
           F++S  V  AL+ +YS+C     A R+ EQ                              
Sbjct: 310 FDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNI 369

Query: 191 ---MVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
              +  R+ V+WTAMI G     +Y   I+LFR+M   G +P   TL  +L   + L  L
Sbjct: 370 FVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASL 429

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
            +GK IHG A   G  +   +S AL+ MY +       +R        +D V W+S+I  
Sbjct: 430 SHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIA 489

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
            +Q G   EA++LF  M +E + P+ +T + + S+CT                 AGL   
Sbjct: 490 LAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTH----------------AGL--- 530

Query: 368 VSIGNALMNMYSKCGSI--TSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
           V+ G    +M      I  T SH             +  ++  +G  G  +EA +   +M
Sbjct: 531 VNQGRQYFDMMKDVDKIIPTLSH-------------YACMVDLFGRAGLLQEAQEFIEKM 577

Query: 426 QESGVEPDAITVLAILSACN-HAGLVKEAETLFNNVMKEKKIALAIEH---YACYVDLLG 481
               +EPD +T  ++LSAC  H  +          V  E+ + L  E+   Y+   +L  
Sbjct: 578 P---IEPDVVTWGSLLSACRVHKNID------LGKVAAERLLLLEPENSGAYSALANLYS 628

Query: 482 KSGKIEDACKVVSTM 496
             GK E+A K+  +M
Sbjct: 629 ACGKWEEAAKIRKSM 643



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 39/152 (25%)

Query: 331 PNSVTLLAILSSCTR--QSFLSHGLG------VHCYIMKAGLNFDVSIGNALMNMYSKCG 382
           P  ++L  +L  CT   Q  ++   G      VHC ++K+GL F V + N LMN+YSK G
Sbjct: 4   PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTG 63

Query: 383 SITSSHQIFNEM-------------------------------AARDFVSWTTLISGYGF 411
               + ++F+EM                                 RD VSWTT+I GY  
Sbjct: 64  YALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKN 123

Query: 412 HGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
            G   +A+++  +M + G+EP   T+  +L++
Sbjct: 124 IGQYHKAIRVMGDMVKEGIEPTQFTLTNVLAS 155


>gi|42563517|ref|NP_187185.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546760|sp|Q9MA85.2|PP215_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g05340
 gi|332640702|gb|AEE74223.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 658

 Score =  305 bits (780), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 180/558 (32%), Positives = 296/558 (53%), Gaps = 13/558 (2%)

Query: 33  VIKACAYAQTHQHFGLQLHCTALKSGSDADPV----------ISNSLISMYAKFSKPESA 82
           ++  C       H G  LH + +K+    +PV          + NSL+S+YAK  K   A
Sbjct: 50  LLSICGREGWFPHLGPCLHASIIKNPEFFEPVDADIHRNALVVWNSLLSLYAKCGKLVDA 109

Query: 83  YQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQI 142
            +LFDEMP RD IS N +   F +N        + + M   G    A L   ++S+C   
Sbjct: 110 IKLFDEMPMRDVISQNIVFYGFLRNRETESGFVLLKRMLGSGGFDHATLTI-VLSVCDTP 168

Query: 143 GELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAM 202
               + + IHAL I+ G ++  + V   L+  Y KC   +    VF+ M  RN ++ TA+
Sbjct: 169 EFCLVTKMIHALAILSG-YDKEISVGNKLITSYFKCGCSVSGRGVFDGMSHRNVITLTAV 227

Query: 203 ISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGF 262
           ISG I+++ ++ G+ LF  M+R  V P  VT    L AC+  + +  G+ IH   +  G 
Sbjct: 228 ISGLIENELHEDGLRLFSLMRRGLVHPNSVTYLSALAACSGSQRIVEGQQIHALLWKYGI 287

Query: 263 DFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFS 322
           + +  + +ALM MY +C  ++  A  IFE T   D V  + I+ G +Q+G   EA++ F 
Sbjct: 288 ESELCIESALMDMYSKCG-SIEDAWTIFESTTEVDEVSMTVILVGLAQNGSEEEAIQFFI 346

Query: 323 RMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCG 382
           RM    +E ++  + A+L      + L  G  +H  ++K   + +  + N L+NMYSKCG
Sbjct: 347 RMLQAGVEIDANVVSAVLGVSFIDNSLGLGKQLHSLVIKRKFSGNTFVNNGLINMYSKCG 406

Query: 383 SITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILS 442
            +T S  +F  M  R++VSW ++I+ +  HG+G  AL+L+ EM    V+P  +T L++L 
Sbjct: 407 DLTDSQTVFRRMPKRNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLH 466

Query: 443 ACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPST 502
           AC+H GL+ +   L N + +   I    EHY C +D+LG++G +++A   + ++P+KP  
Sbjct: 467 ACSHVGLIDKGRELLNEMKEVHGIEPRTEHYTCIIDMLGRAGLLKEAKSFIDSLPLKPDC 526

Query: 503 RILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVM 562
           +I  +L+ AC  HG  EV E  A QL +  P++++ + L++ + S  G W    +  + M
Sbjct: 527 KIWQALLGACSFHGDTEVGEYAAEQLFQTAPDSSSAHILIANIYSSRGKWKERAKTIKRM 586

Query: 563 RAKGLSKSYGFSRIENEY 580
           +A G++K  G S IE E+
Sbjct: 587 KAMGVTKETGISSIEIEH 604



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 59/120 (49%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPY 91
           S +   ++       G QLH   +K     +  ++N LI+MY+K      +  +F  MP 
Sbjct: 361 SAVLGVSFIDNSLGLGKQLHSLVIKRKFSGNTFVNNGLINMYSKCGDLTDSQTVFRRMPK 420

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQI 151
           R+ +SWNS+I  F ++G  + +L+++ EM              ++  CS +G ++ GR++
Sbjct: 421 RNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLHACSHVGLIDKGREL 480


>gi|224124484|ref|XP_002319343.1| predicted protein [Populus trichocarpa]
 gi|222857719|gb|EEE95266.1| predicted protein [Populus trichocarpa]
          Length = 848

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 177/551 (32%), Positives = 306/551 (55%), Gaps = 3/551 (0%)

Query: 27  TAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLF 86
           +A   S + AC   +    FG+Q+HC  +K G + DP +  SL++MY+K    E A  +F
Sbjct: 256 SASFTSTLSACCQGE-FVSFGMQVHCDLVKLGFENDPYVCTSLLTMYSKCKLVEDAENVF 314

Query: 87  DEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELE 146
           D++  + T  WN++I+ +  NG     L+++++M +      +     ++S C  +G  +
Sbjct: 315 DQVSVKKTELWNAMISAYVGNGRSYDGLKIYKQMKVLQIPPDSLTATNVLSSCCLVGSYD 374

Query: 147 LGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGC 206
            GR IHA  +V    + +V + +ALL +YSKC +   A  +F  +  R+ V+W +MISG 
Sbjct: 375 FGRLIHA-ELVKRPIQSNVALQSALLTMYSKCGNSDDANSIFNTIKGRDVVAWGSMISGF 433

Query: 207 IDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDH 266
             ++ Y   ++ + +M   G KP    +  V+ AC  L+++  G  IHG A   G + D 
Sbjct: 434 CQNRKYMEALEFYNSMTVYGEKPDSDIMASVVSACTGLKNVNLGCTIHGLAIKSGLEQDV 493

Query: 267 HLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRL 326
            ++++L+ MY +         + F    +K++V W+SII  Y ++G    ++ LFS+M  
Sbjct: 494 FVASSLVDMYSKFNFPKMSGNV-FSDMPLKNLVAWNSIISCYCRNGLPDLSISLFSQMTQ 552

Query: 327 ERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITS 386
             + P+SV++ ++L S +  + L  G  VH Y+++  +  D+ + NAL++MY KCG +  
Sbjct: 553 YGLFPDSVSITSVLVSVSSVAVLRKGKAVHGYLIRQRIPSDLQLENALIDMYIKCGFLKY 612

Query: 387 SHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH 446
           +  IF  M   + V+W  +I+G G HG   +A+ LF EM+  G+ PD IT +++L++CNH
Sbjct: 613 AQHIFQNMLQTNLVTWNIMIAGCGSHGDWLKAMSLFDEMRSFGIAPDDITFISLLTSCNH 672

Query: 447 AGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILS 506
            G ++E   LF  +  E  I   +EHY   VDLLG++G+++DA   V  +P++P   I  
Sbjct: 673 CGFIEEGLKLFQLMTVEHGIEPRMEHYVNIVDLLGRAGRLDDAYAFVKNLPIEPDRSIWL 732

Query: 507 SLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566
           SL+ +CR+H  +E+ ++ AH+L++ EP   +NY  L  +  E+     A  +   M+ KG
Sbjct: 733 SLLCSCRVHHNVELGKLAAHKLLDIEPSRGSNYVQLLNLYGENELQDRAANLRASMKEKG 792

Query: 567 LSKSYGFSRIE 577
           L K+ G S IE
Sbjct: 793 LKKTPGCSWIE 803



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 143/523 (27%), Positives = 260/523 (49%), Gaps = 23/523 (4%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGS- 59
           +V +  Y   L  Y +    + L +     PS++KAC +    Q +G  +H T +  G  
Sbjct: 27  LVQQGQYVDALQFYSR----NPLNATRFTYPSLLKACGFLSNLQ-YGKTIHSTIITKGFF 81

Query: 60  DADPVISNSLISMYAKFSKPESAYQLFDEMPY-----RDTISWNSIINCFTQNGFYVRSL 114
            +DP I+ SLI+ Y K     +A ++FD++P      +D   WNSI+N + + G     +
Sbjct: 82  YSDPYITTSLINFYFKCGSFGNAVKVFDKLPESEVSGQDVTFWNSIVNGYFRFGHKKEGI 141

Query: 115 EMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDL 174
             F  M L G  ++ +  +  I L +  G L   +QIH    V   F    F+ + L+ +
Sbjct: 142 AQFCRMQLFG--VRPDAYSLCILLGASDGHLGYAKQIHGYS-VRKVFYGDPFLESGLIYM 198

Query: 175 YSKCHHWLIALRVFEQMVIR-NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVT 233
           Y  C   L A R+F+++  + N V+W  MI G  ++  ++  ++++   + E VK    +
Sbjct: 199 YFSCGRPLDAWRLFKELEDKGNVVAWNVMIGGFGENGLWENSLEVYLLAKNENVKLVSAS 258

Query: 234 LTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERT 293
            T  L AC +   +  G  +H      GF+ D ++  +L+ MY +C + +  A  +F++ 
Sbjct: 259 FTSTLSACCQGEFVSFGMQVHCDLVKLGFENDPYVCTSLLTMYSKC-KLVEDAENVFDQV 317

Query: 294 KVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGL 353
            VK   +W+++I  Y  +G   + +K++ +M++ +I P+S+T   +LSSC        G 
Sbjct: 318 SVKKTELWNAMISAYVGNGRSYDGLKIYKQMKVLQIPPDSLTATNVLSSCCLVGSYDFGR 377

Query: 354 GVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHG 413
            +H  ++K  +  +V++ +AL+ MYSKCG+   ++ IFN +  RD V+W ++ISG+  + 
Sbjct: 378 LIHAELVKRPIQSNVALQSALLTMYSKCGNSDDANSIFNTIKGRDVVAWGSMISGFCQNR 437

Query: 414 YGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK---EKKIALAI 470
              EAL+ +  M   G +PD+  + +++SAC     V    T+    +K   E+ + +A 
Sbjct: 438 KYMEALEFYNSMTVYGEKPDSDIMASVVSACTGLKNVNLGCTIHGLAIKSGLEQDVFVA- 496

Query: 471 EHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACR 513
              +  VD+  K    + +  V S MP+K      S +   CR
Sbjct: 497 ---SSLVDMYSKFNFPKMSGNVFSDMPLKNLVAWNSIISCYCR 536



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 126/479 (26%), Positives = 253/479 (52%), Gaps = 7/479 (1%)

Query: 40  AQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYR-DTISWN 98
           +  H  +  Q+H  +++     DP + + LI MY    +P  A++LF E+  + + ++WN
Sbjct: 166 SDGHLGYAKQIHGYSVRKVFYGDPFLESGLIYMYFSCGRPLDAWRLFKELEDKGNVVAWN 225

Query: 99  SIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVD 158
            +I  F +NG +  SLE++         L +      +S C Q   +  G Q+H  ++  
Sbjct: 226 VMIGGFGENGLWENSLEVYLLAKNENVKLVSASFTSTLSACCQGEFVSFGMQVHCDLVKL 285

Query: 159 GSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCI-DSQNYDTGID 217
           G FE   +V T+LL +YSKC     A  VF+Q+ ++    W AMIS  + + ++YD G+ 
Sbjct: 286 G-FENDPYVCTSLLTMYSKCKLVEDAENVFDQVSVKKTELWNAMISAYVGNGRSYD-GLK 343

Query: 218 LFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYC 277
           +++ M+   + P  +T T VL +C  +     G+ IH          +  L +AL+ MY 
Sbjct: 344 IYKQMKVLQIPPDSLTATNVLSSCCLVGSYDFGRLIHAELVKRPIQSNVALQSALLTMYS 403

Query: 278 ECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLL 337
           +C  +   A  IF   K +DVV W S+I G+ Q+    EA++ ++ M +   +P+S  + 
Sbjct: 404 KCGNS-DDANSIFNTIKGRDVVAWGSMISGFCQNRKYMEALEFYNSMTVYGEKPDSDIMA 462

Query: 338 AILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR 397
           +++S+CT    ++ G  +H   +K+GL  DV + ++L++MYSK      S  +F++M  +
Sbjct: 463 SVVSACTGLKNVNLGCTIHGLAIKSGLEQDVFVASSLVDMYSKFNFPKMSGNVFSDMPLK 522

Query: 398 DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLF 457
           + V+W ++IS Y  +G  + ++ LF +M + G+ PD++++ ++L + +   ++++ + + 
Sbjct: 523 NLVAWNSIISCYCRNGLPDLSISLFSQMTQYGLFPDSVSITSVLVSVSSVAVLRKGKAVH 582

Query: 458 NNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG 516
             ++++ +I   ++     +D+  K G ++ A  +   M ++ +    + +++ C  HG
Sbjct: 583 GYLIRQ-RIPSDLQLENALIDMYIKCGFLKYAQHIFQNM-LQTNLVTWNIMIAGCGSHG 639



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 109/442 (24%), Positives = 210/442 (47%), Gaps = 13/442 (2%)

Query: 101 INCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGS 160
           I    Q G YV +L+ +    L            ++  C  +  L+ G+ IH+ +I  G 
Sbjct: 24  IVTLVQQGQYVDALQFYSRNPLNATRFT---YPSLLKACGFLSNLQYGKTIHSTIITKGF 80

Query: 161 FELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS------WTAMISGCIDSQNYDT 214
           F    +++T+L++ Y KC  +  A++VF+++   +EVS      W ++++G     +   
Sbjct: 81  FYSDPYITTSLINFYFKCGSFGNAVKVFDKLP-ESEVSGQDVTFWNSIVNGYFRFGHKKE 139

Query: 215 GIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMH 274
           GI  F  MQ  GV+P   +L I+L A      L   K IHGY+    F  D  L + L++
Sbjct: 140 GIAQFCRMQLFGVRPDAYSLCILLGASDG--HLGYAKQIHGYSVRKVFYGDPFLESGLIY 197

Query: 275 MYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSV 334
           MY  C   L   R+  E     +VV W+ +I G+ ++G    +++++   + E ++  S 
Sbjct: 198 MYFSCGRPLDAWRLFKELEDKGNVVAWNVMIGGFGENGLWENSLEVYLLAKNENVKLVSA 257

Query: 335 TLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEM 394
           +  + LS+C +  F+S G+ VHC ++K G   D  +  +L+ MYSKC  +  +  +F+++
Sbjct: 258 SFTSTLSACCQGEFVSFGMQVHCDLVKLGFENDPYVCTSLLTMYSKCKLVEDAENVFDQV 317

Query: 395 AARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAE 454
           + +    W  +IS Y  +G   + L+++ +M+   + PD++T   +LS+C   G      
Sbjct: 318 SVKKTELWNAMISAYVGNGRSYDGLKIYKQMKVLQIPPDSLTATNVLSSCCLVGSYDFGR 377

Query: 455 TLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRI 514
            +   ++K + I   +   +  + +  K G  +DA  + +T+  +      S +   C+ 
Sbjct: 378 LIHAELVK-RPIQSNVALQSALLTMYSKCGNSDDANSIFNTIKGRDVVAWGSMISGFCQN 436

Query: 515 HGRLEVAEMLAHQLIEAEPENA 536
              +E  E      +  E  ++
Sbjct: 437 RKYMEALEFYNSMTVYGEKPDS 458



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 177/367 (48%), Gaps = 26/367 (7%)

Query: 216 IDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDF-DHHLSAALMH 274
           +D  +   R  +  TR T   +L AC  L +L+ GK IH      GF + D +++ +L++
Sbjct: 34  VDALQFYSRNPLNATRFTYPSLLKACGFLSNLQYGKTIHSTIITKGFFYSDPYITTSLIN 93

Query: 275 MYCECTEALHPARIIFER-----TKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
            Y +C  +   A  +F++        +DV  W+SI+ GY + G   E +  F RM+L  +
Sbjct: 94  FYFKCG-SFGNAVKVFDKLPESEVSGQDVTFWNSIVNGYFRFGHKKEGIAQFCRMQLFGV 152

Query: 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
            P++ +L  +L +      L +   +H Y ++     D  + + L+ MY  CG    + +
Sbjct: 153 RPDAYSLCILLGA--SDGHLGYAKQIHGYSVRKVFYGDPFLESGLIYMYFSCGRPLDAWR 210

Query: 390 IFNEMAAR-DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG 448
           +F E+  + + V+W  +I G+G +G  E +L+++L  +   V+  + +  + LSAC    
Sbjct: 211 LFKELEDKGNVVAWNVMIGGFGENGLWENSLEVYLLAKNENVKLVSASFTSTLSACCQGE 270

Query: 449 LVKEAETLFNNVMKEKKIALAIEHYAC--YVDLLGKSGKIEDACKVVSTMPMKPSTRILS 506
            V     +  +++   K+    + Y C   + +  K   +EDA  V   + +K  T + +
Sbjct: 271 FVSFGMQVHCDLV---KLGFENDPYVCTSLLTMYSKCKLVEDAENVFDQVSVK-KTELWN 326

Query: 507 SLVSACRIHGR----LEVAEMLAHQLIEAEPENAANYTLLSMVC----SESGNWLGAEEV 558
           +++SA   +GR    L++ + +  ++++  P++     +LS  C     + G  + AE V
Sbjct: 327 AMISAYVGNGRSYDGLKIYKQM--KVLQIPPDSLTATNVLSSCCLVGSYDFGRLIHAELV 384

Query: 559 WRVMRAK 565
            R +++ 
Sbjct: 385 KRPIQSN 391


>gi|147863814|emb|CAN79347.1| hypothetical protein VITISV_019894 [Vitis vinifera]
          Length = 667

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 182/515 (35%), Positives = 275/515 (53%), Gaps = 10/515 (1%)

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           N+++S Y KF     A +LFD    RD  SWN +++   +N      L  F +M  C  V
Sbjct: 85  NTILSGYFKFGLVSEAIKLFDGTSKRDCHSWNIVLSGCVKNHKLGEGLTHFMKMR-CSSV 143

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
                   II  C  +G    G+Q+HA  IV    +L  F+ T LL +Y++      A +
Sbjct: 144 RPDNFTYAIIIPCCDLG---FGQQVHA-DIVKVCSDLDAFIGTNLLRMYAEVGEIGDARK 199

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VF+ M  R  V+W AMIS        D  I LFR + REG+     T  IVL   A    
Sbjct: 200 VFDGMPSRGLVTWNAMISCYSKYGRGDKSIGLFRQLXREGISADEYTYAIVLNEFAARWQ 259

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           +     +H      GF  D   + AL+++Y +C      +R+ FE    +DVV W+ II 
Sbjct: 260 VFEAMQVHSLIIERGFCSDRFTNNALVNLYSKCGYVASASRL-FEEIPDQDVVSWTVIIV 318

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL-N 365
           G+ QSG + EAM LF +M+L  IEPNS T   +L +C   +    G   H  ++K GL  
Sbjct: 319 GFLQSGHMEEAMWLFYQMQLGDIEPNSFTFGGLLGACADANAFQKGRHFHGLVLKFGLLG 378

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            DV +G+A+++MYSKCG +  + + F EM  RD  SW  +I GY  +G G +AL+L+ EM
Sbjct: 379 ADVVVGSAVVDMYSKCGEMGDALRAFQEMPERDIASWNGIICGYAQNGAGMKALKLYNEM 438

Query: 426 ---QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGK 482
                SG+ P+ +T + +L AC+H GL+KE  + F  ++ +  I    EHY C VDLLG+
Sbjct: 439 VLLGPSGIAPNEVTFVGVLCACSHNGLLKEGYSYFKEMVDKHLIKPTAEHYTCMVDLLGR 498

Query: 483 SGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLL 542
           +G +++A  ++  +P+KP   +  +L+ AC++HG +++    A  L   EP N++NY LL
Sbjct: 499 AGLLQEAEALILALPIKPDNVMWGALLGACKLHGDVQMTRRTAEHLYTNEPRNSSNYVLL 558

Query: 543 SMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +   ++ G W  A E+  VM A+G+ K+ G S +E
Sbjct: 559 ANSYTDIGEWGEAVEIREVMEARGVEKTAGCSWVE 593


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 183/562 (32%), Positives = 297/562 (52%), Gaps = 4/562 (0%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQL-HCTALKSGSDADPVISNSLISMYAK 75
           ++  +G   N     S++ A A A T     +++ H  A ++G  +D  I N+LI MYAK
Sbjct: 411 QMQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAK 470

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
               + A  +FD M  RD ISWN+++    QNG    +  +F +M   G V  +     +
Sbjct: 471 CGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSL 530

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           ++       LE   ++H   +  G       V +A + +Y +C     A  +F+++ +R+
Sbjct: 531 LNTHGSTDALEWVNEVHKHAVETGLIS-DFRVGSAFIHMYIRCGSIDDARLLFDKLSVRH 589

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
             +W AMI G    +     + LF  MQREG  P   T   +L A  +   L   K +H 
Sbjct: 590 VTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHS 649

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
           +A   G   D  +  AL+H Y +C    + A+ +F+    ++V  W+ +I G +Q G   
Sbjct: 650 HATDAGL-VDLRVGNALVHTYSKCGNVKY-AKQVFDDMVERNVTTWTMMIGGLAQHGCGH 707

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           +A   F +M  E I P++ T ++ILS+C     L     VH + + AGL  D+ +GNAL+
Sbjct: 708 DAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALV 767

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           +MY+KCGSI  +  +F++M  RD  SWT +I G   HG G EAL  F++M+  G +P+  
Sbjct: 768 HMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGY 827

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           + +A+L+AC+HAGLV E    F ++ ++  I   +EHY C VDLLG++G +E+A   +  
Sbjct: 828 SYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILN 887

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGA 555
           MP++P      +L+ AC  +G LE+AE  A + ++ +P++A+ Y LLS + + +G W   
Sbjct: 888 MPIEPDDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGKWEQK 947

Query: 556 EEVWRVMRAKGLSKSYGFSRIE 577
             V  +M+ KG+ K  G S IE
Sbjct: 948 LLVRSMMQRKGIRKEPGRSWIE 969



 Score =  218 bits (556), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 132/397 (33%), Positives = 216/397 (54%), Gaps = 6/397 (1%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           Q+H   +KSG + +  ++N L+ +Y +  + + A Q+FD++  ++   W ++I  + + G
Sbjct: 139 QVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYG 198

Query: 109 FYVRSLEMFREMYL-CGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFV 167
               ++ ++ +M   CG   +   L+ + + C  +  L+ G++IHA +I  G F+  V V
Sbjct: 199 HAEDAMRVYDKMRQECGQPNEITYLSILKACCCPV-NLKWGKKIHAHIIQSG-FQSDVRV 256

Query: 168 STALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV 227
            TAL+++Y KC     A  +F++MV RN +SWT MI G            LF  MQREG 
Sbjct: 257 ETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGF 316

Query: 228 KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPAR 287
            P   T   +L A A    L   K +H +A   G   D  +  AL+HMY + + ++  AR
Sbjct: 317 IPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAK-SGSIDDAR 375

Query: 288 IIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAIL--SSCTR 345
           ++F+    +D+  W+ +I G +Q G   EA  LF +M+     PN  T L+IL  S+   
Sbjct: 376 VVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIAS 435

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
            S L     VH +  +AG   D+ IGNAL++MY+KCGSI  +  +F+ M  RD +SW  +
Sbjct: 436 TSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAM 495

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILS 442
           + G   +G G EA  +FL+MQ+ G+ PD+ T L++L+
Sbjct: 496 MGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLN 532



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 135/438 (30%), Positives = 220/438 (50%), Gaps = 6/438 (1%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E  + +Y +     G   N     S++KAC     +  +G ++H   ++SG  +D  +  
Sbjct: 201 EDAMRVYDKMRQECG-QPNEITYLSILKACC-CPVNLKWGKKIHAHIIQSGFQSDVRVET 258

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +L++MY K    E A  +FD+M  R+ ISW  +I      G    +  +F +M   GF+ 
Sbjct: 259 ALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIP 318

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
            +     I++  +  G LE  +++H+   V+    L + V  AL+ +Y+K      A  V
Sbjct: 319 NSYTYVSILNANASAGALEWVKEVHSHA-VNAGLALDLRVGNALVHMYAKSGSIDDARVV 377

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVL--LACAELR 245
           F+ M  R+  SWT MI G            LF  MQR G  P   T   +L   A A   
Sbjct: 378 FDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTS 437

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
            L   K +H +A   GF  D  +  AL+HMY +C  ++  AR++F+    +DV+ W++++
Sbjct: 438 ALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCG-SIDDARLVFDGMCDRDVISWNAMM 496

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
            G +Q+G   EA  +F +M+ E + P+S T L++L++      L     VH + ++ GL 
Sbjct: 497 GGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLI 556

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            D  +G+A ++MY +CGSI  +  +F++++ R   +W  +I G      G EAL LFL+M
Sbjct: 557 SDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQM 616

Query: 426 QESGVEPDAITVLAILSA 443
           Q  G  PDA T + ILSA
Sbjct: 617 QREGFIPDATTFINILSA 634



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 105/309 (33%), Positives = 177/309 (57%), Gaps = 2/309 (0%)

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           I+  C +  ++ L +Q+H  +I  G  E +++V+  LL +Y +C     A +VF++++ +
Sbjct: 124 ILQRCLKQEDILLAKQVHVCIIKSG-MEQNLYVANKLLRVYIRCGRLQCARQVFDKLLKK 182

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
           N   WT MI G  +  + +  + ++  M++E  +P  +T   +L AC    +L+ GK IH
Sbjct: 183 NIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIH 242

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
            +    GF  D  +  AL++MY +C  ++  A++IF++   ++V+ W+ +I G +  G  
Sbjct: 243 AHIIQSGFQSDVRVETALVNMYVKCG-SIEDAQLIFDKMVERNVISWTVMIGGLAHYGRG 301

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
            EA  LF +M+ E   PNS T ++IL++      L     VH + + AGL  D+ +GNAL
Sbjct: 302 QEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNAL 361

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           ++MY+K GSI  +  +F+ M  RD  SWT +I G   HG G+EA  LFL+MQ +G  P+ 
Sbjct: 362 VHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNL 421

Query: 435 ITVLAILSA 443
            T L+IL+A
Sbjct: 422 TTYLSILNA 430



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 87/281 (30%), Positives = 156/281 (55%), Gaps = 2/281 (0%)

Query: 216 IDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHM 275
           + + +   ++G+     +   +L  C +  D+   K +H      G + + +++  L+ +
Sbjct: 103 VAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRV 162

Query: 276 YCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVT 335
           Y  C   L  AR +F++   K++ IW+++I GY++ G   +AM+++ +MR E  +PN +T
Sbjct: 163 YIRCGR-LQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEIT 221

Query: 336 LLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA 395
            L+IL +C     L  G  +H +I+++G   DV +  AL+NMY KCGSI  +  IF++M 
Sbjct: 222 YLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMV 281

Query: 396 ARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAET 455
            R+ +SWT +I G   +G G+EA  LFL+MQ  G  P++ T ++IL+A   AG ++  + 
Sbjct: 282 ERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKE 341

Query: 456 LFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
           + ++ +    +AL +      V +  KSG I+DA  V   M
Sbjct: 342 VHSHAVN-AGLALDLRVGNALVHMYAKSGSIDDARVVFDGM 381


>gi|242033481|ref|XP_002464135.1| hypothetical protein SORBIDRAFT_01g012973 [Sorghum bicolor]
 gi|241917989|gb|EER91133.1| hypothetical protein SORBIDRAFT_01g012973 [Sorghum bicolor]
          Length = 576

 Score =  304 bits (779), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 168/492 (34%), Positives = 275/492 (55%), Gaps = 12/492 (2%)

Query: 17  ELHPSGLY----SNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISM 72
           +L+ S LY     N    P V+KAC+ A      G  +H  A   G   D  +S +LI +
Sbjct: 85  DLYRSMLYFRVPPNKYTFPFVLKACS-ALADLCAGRTIHAHAAAVGLHTDLFVSTALIDL 143

Query: 73  YAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY-LCGFVLKAEL 131
           Y + ++   A  +F +MP RD ++WN+++  +  +G Y  ++    +M    G    A  
Sbjct: 144 YIRCARFGPAANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNAST 203

Query: 132 LAGIISLCSQIGELELGRQIHALVI---VDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
           L  ++ L +Q G L  G  +HA  +   +D + E  V + TALLD+Y+KC H + A RVF
Sbjct: 204 LVSLLPLLAQHGALFQGTSVHAYCLRAYLDQN-EEQVLIGTALLDMYAKCKHLVYACRVF 262

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVT-LTIVLLACAELRDL 247
             M +RNEV+W+A+I G +         +LF+ M  EG+     T +   L  CA L DL
Sbjct: 263 HGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADL 322

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
           R G  +H      G   D     +L+ MY +    ++ A ++F+   +KD + + +++ G
Sbjct: 323 RMGTQLHALLAKSGIHADLTAGNSLLSMYAK-AGLINEATMLFDEIAIKDTISYGALLSG 381

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
           Y Q+G   EA  +F +M+   ++P+  T+++++ +C+  + L HG   H  ++  GL  +
Sbjct: 382 YVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALE 441

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
            SI N+L++MY+KCG I  S Q+F++M ARD VSW T+I+GYG HG G+EA  LFL M+ 
Sbjct: 442 TSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKN 501

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487
            G EPD +T + +++AC+H+GLV E +  F+ +  +  I   +EHY C VDLL + G ++
Sbjct: 502 QGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGFLD 561

Query: 488 DACKVVSTMPMK 499
           +A + + +MP+K
Sbjct: 562 EAYQFIQSMPLK 573



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 102/373 (27%), Positives = 171/373 (45%), Gaps = 49/373 (13%)

Query: 183 IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
           +A +VF+++   +  ++ A+I        +   IDL+R+M    V P + T   VL AC+
Sbjct: 51  LARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVLKACS 110

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
            L DL  G+ IH +A   G   D  +S AL+ +Y  C     PA  +F +  ++DVV W+
Sbjct: 111 ALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCAR-FGPAANVFAKMPMRDVVAWN 169

Query: 303 SIIRGYSQSGDLSEAMK-LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           +++ GY+  G    A+  L        + PN+ TL+++L    +   L  G  VH Y ++
Sbjct: 170 AMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLR 229

Query: 362 AGLNFD---VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEA 418
           A L+ +   V IG AL++MY+KC  +  + ++F+ M  R+ V+W+ LI G+       EA
Sbjct: 230 AYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEA 289

Query: 419 LQLFLEM------------------------------------QESGVEPDAITVLAILS 442
             LF +M                                     +SG+  D     ++LS
Sbjct: 290 FNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLS 349

Query: 443 ACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP---MK 499
               AGL+ EA  LF+ +  +  I+     Y   +    ++GK E+A  V   M    ++
Sbjct: 350 MYAKAGLINEATMLFDEIAIKDTIS-----YGALLSGYVQNGKAEEAFLVFKKMQACNVQ 404

Query: 500 PSTRILSSLVSAC 512
           P    + SL+ AC
Sbjct: 405 PDIATMVSLIPAC 417


>gi|297817672|ref|XP_002876719.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322557|gb|EFH52978.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1005

 Score =  304 bits (779), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 185/569 (32%), Positives = 315/569 (55%), Gaps = 5/569 (0%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           +TL L++ E+  +G  SN+  + S + AC    ++   G ++H   LKS    +  + N+
Sbjct: 247 ETLQLFR-EMQMTGPASNSYTIVSALTACE-GFSYAKLGKEIHAAVLKSTHSFEVYVCNA 304

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           LI+MYA+  K   A ++   M   D ++WNS+I  + QN  Y  +L+ F +M   G    
Sbjct: 305 LIAMYARCGKMLEAGRILRLMNNADVVTWNSLIKGYVQNLMYKEALQFFCDMIAAGHKPD 364

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
              L  +I+   ++  L  G ++HA VI  G ++ ++ V   L+D+YSKC+      R F
Sbjct: 365 EVSLTSVIAASGRLSNLLAGMELHAYVIKHG-WDSNLLVGNTLIDMYSKCNLTCYMGRAF 423

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
             M  ++ +SWT +I+G   +  +   + LFR + ++ ++   + L  +L AC+ L+ + 
Sbjct: 424 LMMHEKDLISWTTIIAGYALNDCHVEALQLFRDVAKKRMEIDEMMLGSILRACSVLKSML 483

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
             K IH +    G   D  +   L+ +Y +C    + +R+ FE  K KDVV W+S+I   
Sbjct: 484 IVKEIHCHILRKGL-IDTVIQNELVDVYGKCRNMGYASRV-FESIKGKDVVSWTSMISSS 541

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
           + +G+ +EA++LF RM    +  +SV LL ILS+    S L  G  +H Y+++ G   + 
Sbjct: 542 ALNGNENEAVELFRRMAETGLLADSVALLCILSAAASLSALKKGREIHGYLLRKGFCLEG 601

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
           SI  A+++MY+ CG + S+  +F+ +  +  + +T++I+ YG HG G+ +++LF +M+  
Sbjct: 602 SIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKASVELFNKMRHE 661

Query: 429 GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIED 488
            V PD I+ LA+L AC+HAGL+ E       +  E K+    EHY C VD+LG++  + +
Sbjct: 662 NVSPDHISFLALLYACSHAGLLDEGRRFLKIMELEYKLEPWPEHYVCLVDMLGRANCVVE 721

Query: 489 ACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSE 548
           A + V  M  +P+T +  +L++ACR H   E+ E+ A +L+E EP+N  N  L+S V +E
Sbjct: 722 AFEFVKMMKTEPTTEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAE 781

Query: 549 SGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            G W   E+V   M+A G+ K  G S IE
Sbjct: 782 QGRWNDVEKVRAKMKASGMEKHPGCSWIE 810



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 144/467 (30%), Positives = 250/467 (53%), Gaps = 15/467 (3%)

Query: 20  PSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKP 79
           P  LYS     P ++KAC   +  +  G +LHC  +K G ++   I N+L+SMYAK    
Sbjct: 159 PLDLYS----FPVLLKACGKLRDIRS-GTELHCMLVKLGFNSTGFIVNALVSMYAKTDHL 213

Query: 80  ESAYQLFDEMPYR-DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISL 138
            +A +LFD    + D + WNSI++ ++ +G  + +L++FREM + G    +  +   ++ 
Sbjct: 214 SAAKRLFDASQEKGDAVLWNSILSSYSTSGKSLETLQLFREMQMTGPASNSYTIVSALTA 273

Query: 139 CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
           C      +LG++IHA V+   +    V+V  AL+ +Y++C   L A R+   M   + V+
Sbjct: 274 CEGFSYAKLGKEIHAAVL-KSTHSFEVYVCNALIAMYARCGKMLEAGRILRLMNNADVVT 332

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258
           W ++I G + +  Y   +  F  M   G KP  V+LT V+ A   L +L  G  +H Y  
Sbjct: 333 WNSLIKGYVQNLMYKEALQFFCDMIAAGHKPDEVSLTSVIAASGRLSNLLAGMELHAYVI 392

Query: 259 CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAM 318
             G+D +  +   L+ MY +C    +  R  F     KD++ W++II GY+ +    EA+
Sbjct: 393 KHGWDSNLLVGNTLIDMYSKCNLTCYMGR-AFLMMHEKDLISWTTIIAGYALNDCHVEAL 451

Query: 319 KLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMY 378
           +LF  +  +R+E + + L +IL +C+    +     +HC+I++ GL  D  I N L+++Y
Sbjct: 452 QLFRDVAKKRMEIDEMMLGSILRACSVLKSMLIVKEIHCHILRKGL-IDTVIQNELVDVY 510

Query: 379 SKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
            KC ++  + ++F  +  +D VSWT++IS    +G   EA++LF  M E+G+  D++ +L
Sbjct: 511 GKCRNMGYASRVFESIKGKDVVSWTSMISSSALNGNENEAVELFRRMAETGLLADSVALL 570

Query: 439 AILSACNHAGLVKEAETLFNNVMK-----EKKIALA-IEHYACYVDL 479
            ILSA      +K+   +   +++     E  IA+A ++ YAC  DL
Sbjct: 571 CILSAAASLSALKKGREIHGYLLRKGFCLEGSIAVAVVDMYACCGDL 617



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 132/472 (27%), Positives = 237/472 (50%), Gaps = 12/472 (2%)

Query: 66  SNSLISMYAKF------SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFRE 119
           +NS I  YA        S+  S  ++FDEM  R   +WN++I  +  NG    +L ++R 
Sbjct: 93  NNSPIEAYAYLLELCGKSRALSQEKVFDEMRDRTAFAWNALIGAYVSNGEPASALFIYRN 152

Query: 120 MYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH 179
           M + G  L       ++  C ++ ++  G ++H +++  G F  + F+  AL+ +Y+K  
Sbjct: 153 MRVEGVPLDLYSFPVLLKACGKLRDIRSGTELHCMLVKLG-FNSTGFIVNALVSMYAKTD 211

Query: 180 HWLIALRVFEQMVIRNE-VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVL 238
           H   A R+F+    + + V W +++S    S      + LFR MQ  G      T+   L
Sbjct: 212 HLSAAKRLFDASQEKGDAVLWNSILSSYSTSGKSLETLQLFREMQMTGPASNSYTIVSAL 271

Query: 239 LACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDV 298
            AC      + GK IH         F+ ++  AL+ MY  C + L   RI+       DV
Sbjct: 272 TACEGFSYAKLGKEIHAAVLKSTHSFEVYVCNALIAMYARCGKMLEAGRIL-RLMNNADV 330

Query: 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCY 358
           V W+S+I+GY Q+    EA++ F  M     +P+ V+L +++++  R S L  G+ +H Y
Sbjct: 331 VTWNSLIKGYVQNLMYKEALQFFCDMIAAGHKPDEVSLTSVIAASGRLSNLLAGMELHAY 390

Query: 359 IMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEA 418
           ++K G + ++ +GN L++MYSKC       + F  M  +D +SWTT+I+GY  +    EA
Sbjct: 391 VIKHGWDSNLLVGNTLIDMYSKCNLTCYMGRAFLMMHEKDLISWTTIIAGYALNDCHVEA 450

Query: 419 LQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVD 478
           LQLF ++ +  +E D + + +IL AC+    +   + +  +++++  I   I++    VD
Sbjct: 451 LQLFRDVAKKRMEIDEMMLGSILRACSVLKSMLIVKEIHCHILRKGLIDTVIQNE--LVD 508

Query: 479 LLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE 530
           + GK   +  A +V  ++  K      +S++S+  ++G    A  L  ++ E
Sbjct: 509 VYGKCRNMGYASRVFESIKGKDVVS-WTSMISSSALNGNENEAVELFRRMAE 559


>gi|15233292|ref|NP_188854.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273371|sp|Q9LIE7.1|PP246_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22150, chloroplastic; Flags: Precursor
 gi|11994734|dbj|BAB03063.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|110739449|dbj|BAF01634.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643073|gb|AEE76594.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 820

 Score =  304 bits (779), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 191/575 (33%), Positives = 326/575 (56%), Gaps = 21/575 (3%)

Query: 13  LYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD--ADPVISNSLI 70
           + + E+ PS + S   + P+V  + +  + +  +GL L     K G +   D  + +S I
Sbjct: 205 MMRMEVKPSPV-SFVNVFPAVSISRSIKKANVFYGLML-----KLGDEYVKDLFVVSSAI 258

Query: 71  SMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE 130
           SMYA+    ES+ ++FD    R+   WN++I  + QN   V S+E+F E      ++  E
Sbjct: 259 SMYAELGDIESSRRVFDSCVERNIEVWNTMIGVYVQNDCLVESIELFLEAIGSKEIVSDE 318

Query: 131 ---LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
              LLA   S  S + ++ELGRQ H  V  +   EL + +  +L+ +YS+C     +  V
Sbjct: 319 VTYLLAA--SAVSALQQVELGRQFHGFVSKNFR-ELPIVIVNSLMVMYSRCGSVHKSFGV 375

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F  M  R+ VSW  MIS  + +   D G+ L   MQ++G K   +T+T +L A + LR+ 
Sbjct: 376 FLSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSAASNLRNK 435

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV--KDVVIWSSII 305
             GK  H +    G  F+  +++ L+ MY + +  +  ++ +FE +    +D   W+S+I
Sbjct: 436 EIGKQTHAFLIRQGIQFEG-MNSYLIDMYSK-SGLIRISQKLFEGSGYAERDQATWNSMI 493

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
            GY+Q+G   +   +F +M  + I PN+VT+ +IL +C++   +  G  +H + ++  L+
Sbjct: 494 SGYTQNGHTEKTFLVFRKMLEQNIRPNAVTVASILPACSQIGSVDLGKQLHGFSIRQYLD 553

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            +V + +AL++MYSK G+I  +  +F++   R+ V++TT+I GYG HG GE A+ LFL M
Sbjct: 554 QNVFVASALVDMYSKAGAIKYAEDMFSQTKERNSVTYTTMILGYGQHGMGERAISLFLSM 613

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
           QESG++PDAIT +A+LSAC+++GL+ E   +F  + +   I  + EHY C  D+LG+ G+
Sbjct: 614 QESGIKPDAITFVAVLSACSYSGLIDEGLKIFEEMREVYNIQPSSEHYCCITDMLGRVGR 673

Query: 486 IEDACKVVSTMPMKPS-TRILSSLVSACRIHGRLEVAEMLAHQLIEAEP-ENAANY-TLL 542
           + +A + V  +  + +   +  SL+ +C++HG LE+AE ++ +L + +  +N + Y  LL
Sbjct: 674 VNEAYEFVKGLGEEGNIAELWGSLLGSCKLHGELELAETVSERLAKFDKGKNFSGYEVLL 733

Query: 543 SMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           S + +E   W   ++V R MR KGL K  G S IE
Sbjct: 734 SNMYAEEQKWKSVDKVRRGMREKGLKKEVGRSGIE 768



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 133/540 (24%), Positives = 263/540 (48%), Gaps = 36/540 (6%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK-FSKP-----ESAYQL 85
           S +KACA  +  +  G  +HC  ++   ++  V+ NSL++MY    + P     +   ++
Sbjct: 112 STLKACAETKNLKA-GKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPDCFEYDVVRKV 170

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL 145
           FD M  ++ ++WN++I+ + + G   R+ E  R+    G +++ E+    +S  +    +
Sbjct: 171 FDNMRRKNVVAWNTLISWYVKTG---RNAEACRQF---GIMMRMEVKPSPVSFVNVFPAV 224

Query: 146 ELGRQIHALVIVDG-------SFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
            + R I    +  G        +   +FV ++ + +Y++      + RVF+  V RN   
Sbjct: 225 SISRSIKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDIESSRRVFDSCVERNIEV 284

Query: 199 WTAMISGCIDSQNYDTGIDLF-RAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
           W  MI   + +      I+LF  A+  + +    VT  +   A + L+ +  G+  HG+ 
Sbjct: 285 WNTMIGVYVQNDCLVESIELFLEAIGSKEIVSDEVTYLLAASAVSALQQVELGRQFHGFV 344

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
                +    +  +LM MY  C  ++H +  +F   + +DVV W+++I  + Q+G   E 
Sbjct: 345 SKNFRELPIVIVNSLMVMYSRCG-SVHKSFGVFLSMRERDVVSWNTMISAFVQNGLDDEG 403

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
           + L   M+ +  + + +T+ A+LS+ +       G   H ++++ G+ F+  + + L++M
Sbjct: 404 LMLVYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHAFLIRQGIQFE-GMNSYLIDM 462

Query: 378 YSKCGSITSSHQIF--NEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           YSK G I  S ++F  +  A RD  +W ++ISGY  +G+ E+   +F +M E  + P+A+
Sbjct: 463 YSKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEKTFLVFRKMLEQNIRPNAV 522

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLLGKSGKIEDACKV 492
           TV +IL AC+  G V   + L    ++   ++ + +A    +  VD+  K+G I+ A  +
Sbjct: 523 TVASILPACSQIGSVDLGKQLHGFSIRQYLDQNVFVA----SALVDMYSKAGAIKYAEDM 578

Query: 493 VSTMPMKPSTRILSSLVSACRIHGRLE--VAEMLAHQLIEAEPENAANYTLLSMVCSESG 550
            S    + S    ++++     HG  E  ++  L+ Q    +P+      +LS  CS SG
Sbjct: 579 FSQTKERNSV-TYTTMILGYGQHGMGERAISLFLSMQESGIKPDAITFVAVLS-ACSYSG 636



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 112/409 (27%), Positives = 197/409 (48%), Gaps = 23/409 (5%)

Query: 57  SGSDADPVISNSLISMYAKFSK------PESAYQLFDEMPYRDTISWNSIINCFTQNGFY 110
           S + + P ++    S+ ++ SK      P+ A QLFD +P   T+ WN+II  F  N   
Sbjct: 27  SSTFSPPTLTPQTPSIRSRLSKICQDGNPQLARQLFDAIPKPTTVLWNTIIIGFICNNLP 86

Query: 111 VRSLEMFREMYLCGFVLK--AELLAGIISLCSQIGELELGRQIHALVI--VDGSFELSVF 166
             +L  +  M          A   +  +  C++   L+ G+ +H  +I  +  S   S  
Sbjct: 87  HEALLFYSRMKKTAPFTNCDAYTYSSTLKACAETKNLKAGKAVHCHLIRCLQNS---SRV 143

Query: 167 VSTALLDLY------SKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFR 220
           V  +L+++Y        C  + +  +VF+ M  +N V+W  +IS  + +         F 
Sbjct: 144 VHNSLMNMYVSCLNAPDCFEYDVVRKVFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFG 203

Query: 221 AMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDF--DHHLSAALMHMYCE 278
            M R  VKP+ V+   V  A +  R ++     +G     G ++  D  + ++ + MY E
Sbjct: 204 IMMRMEVKPSPVSFVNVFPAVSISRSIKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAE 263

Query: 279 CTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF-SRMRLERIEPNSVTLL 337
             + +  +R +F+    +++ +W+++I  Y Q+  L E+++LF   +  + I  + VT L
Sbjct: 264 LGD-IESSRRVFDSCVERNIEVWNTMIGVYVQNDCLVESIELFLEAIGSKEIVSDEVTYL 322

Query: 338 AILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR 397
              S+ +    +  G   H ++ K      + I N+LM MYS+CGS+  S  +F  M  R
Sbjct: 323 LAASAVSALQQVELGRQFHGFVSKNFRELPIVIVNSLMVMYSRCGSVHKSFGVFLSMRER 382

Query: 398 DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH 446
           D VSW T+IS +  +G  +E L L  EMQ+ G + D ITV A+LSA ++
Sbjct: 383 DVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSAASN 431



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 91/187 (48%), Gaps = 12/187 (6%)

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP----NSVTLLAILS 341
           AR +F+       V+W++II G+  +    EA+  +SRM+  +  P    ++ T  + L 
Sbjct: 58  ARQLFDAIPKPTTVLWNTIIIGFICNNLPHEALLFYSRMK--KTAPFTNCDAYTYSSTLK 115

Query: 342 SCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS------HQIFNEMA 395
           +C     L  G  VHC++++   N    + N+LMNMY  C +           ++F+ M 
Sbjct: 116 ACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPDCFEYDVVRKVFDNMR 175

Query: 396 ARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAET 455
            ++ V+W TLIS Y   G   EA + F  M    V+P  ++ + +  A + +  +K+A  
Sbjct: 176 RKNVVAWNTLISWYVKTGRNAEACRQFGIMMRMEVKPSPVSFVNVFPAVSISRSIKKANV 235

Query: 456 LFNNVMK 462
            +  ++K
Sbjct: 236 FYGLMLK 242


>gi|6729044|gb|AAF27040.1|AC009177_30 hypothetical protein [Arabidopsis thaliana]
          Length = 770

 Score =  304 bits (779), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 180/558 (32%), Positives = 296/558 (53%), Gaps = 13/558 (2%)

Query: 33  VIKACAYAQTHQHFGLQLHCTALKSGSDADPV----------ISNSLISMYAKFSKPESA 82
           ++  C       H G  LH + +K+    +PV          + NSL+S+YAK  K   A
Sbjct: 50  LLSICGREGWFPHLGPCLHASIIKNPEFFEPVDADIHRNALVVWNSLLSLYAKCGKLVDA 109

Query: 83  YQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQI 142
            +LFDEMP RD IS N +   F +N        + + M   G    A L   ++S+C   
Sbjct: 110 IKLFDEMPMRDVISQNIVFYGFLRNRETESGFVLLKRMLGSGGFDHATLTI-VLSVCDTP 168

Query: 143 GELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAM 202
               + + IHAL I+ G ++  + V   L+  Y KC   +    VF+ M  RN ++ TA+
Sbjct: 169 EFCLVTKMIHALAILSG-YDKEISVGNKLITSYFKCGCSVSGRGVFDGMSHRNVITLTAV 227

Query: 203 ISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGF 262
           ISG I+++ ++ G+ LF  M+R  V P  VT    L AC+  + +  G+ IH   +  G 
Sbjct: 228 ISGLIENELHEDGLRLFSLMRRGLVHPNSVTYLSALAACSGSQRIVEGQQIHALLWKYGI 287

Query: 263 DFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFS 322
           + +  + +ALM MY +C  ++  A  IFE T   D V  + I+ G +Q+G   EA++ F 
Sbjct: 288 ESELCIESALMDMYSKCG-SIEDAWTIFESTTEVDEVSMTVILVGLAQNGSEEEAIQFFI 346

Query: 323 RMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCG 382
           RM    +E ++  + A+L      + L  G  +H  ++K   + +  + N L+NMYSKCG
Sbjct: 347 RMLQAGVEIDANVVSAVLGVSFIDNSLGLGKQLHSLVIKRKFSGNTFVNNGLINMYSKCG 406

Query: 383 SITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILS 442
            +T S  +F  M  R++VSW ++I+ +  HG+G  AL+L+ EM    V+P  +T L++L 
Sbjct: 407 DLTDSQTVFRRMPKRNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLH 466

Query: 443 ACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPST 502
           AC+H GL+ +   L N + +   I    EHY C +D+LG++G +++A   + ++P+KP  
Sbjct: 467 ACSHVGLIDKGRELLNEMKEVHGIEPRTEHYTCIIDMLGRAGLLKEAKSFIDSLPLKPDC 526

Query: 503 RILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVM 562
           +I  +L+ AC  HG  EV E  A QL +  P++++ + L++ + S  G W    +  + M
Sbjct: 527 KIWQALLGACSFHGDTEVGEYAAEQLFQTAPDSSSAHILIANIYSSRGKWKERAKTIKRM 586

Query: 563 RAKGLSKSYGFSRIENEY 580
           +A G++K  G S IE E+
Sbjct: 587 KAMGVTKETGISSIEIEH 604



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 59/120 (49%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPY 91
           S +   ++       G QLH   +K     +  ++N LI+MY+K      +  +F  MP 
Sbjct: 361 SAVLGVSFIDNSLGLGKQLHSLVIKRKFSGNTFVNNGLINMYSKCGDLTDSQTVFRRMPK 420

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQI 151
           R+ +SWNS+I  F ++G  + +L+++ EM              ++  CS +G ++ GR++
Sbjct: 421 RNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLHACSHVGLIDKGREL 480


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  304 bits (779), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 166/550 (30%), Positives = 301/550 (54%), Gaps = 36/550 (6%)

Query: 62  DPVI--SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFRE 119
           +P I   NS++  YAK    + A ++F  MP RD +SWN +I+  +++G    +L+M  +
Sbjct: 222 NPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVD 281

Query: 120 MYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH 179
           M+  G    +      ++ C+++  LE G+Q+H  VI +    +  +V++A+++LY+KC 
Sbjct: 282 MHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLP-HIDPYVASAMVELYAKCG 340

Query: 180 HWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLL 239
            +  A RVF  +  RN VSWT +I G +    +   ++LF  M+ E +   +  L  ++ 
Sbjct: 341 CFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLIS 400

Query: 240 ACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVV 299
            C    D+  G  +H      G      +S +L+ MY +C   L  A +IF     +D+V
Sbjct: 401 GCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGN-LQNAELIFNFMAERDIV 459

Query: 300 IWSSIIRGYSQSGDLSEA-------------------------------MKLFSRMRLER 328
            W+ +I  YSQ G++++A                               +K++S M  E+
Sbjct: 460 SWTGMITAYSQVGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEK 519

Query: 329 -IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
            + P+ VT + +   C        G  +  + +K GL  D S+ NA++ MYSKCG I+ +
Sbjct: 520 DVIPDWVTYVTLFRGCADIGANKLGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRISEA 579

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHA 447
            + F+ ++ +D VSW  +I+GY  HG G++A+++F ++   G +PD I+ +A+LS C+H+
Sbjct: 580 RKAFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHS 639

Query: 448 GLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSS 507
           GLV+E +  F+ + ++  I+  +EH++C VDLLG++G + +A  ++  MPMKP+  +  +
Sbjct: 640 GLVEEGKFYFDMMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGA 699

Query: 508 LVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567
           L+SAC+ HG  ++AE+ A  L + +   +  Y LL+ + +++G    + +V ++MR KG+
Sbjct: 700 LLSACKTHGNNDLAELAAKHLFDLDSPGSGGYMLLAKMYADAGKSDDSAQVRKLMRDKGI 759

Query: 568 SKSYGFSRIE 577
            KS G+S +E
Sbjct: 760 KKSPGYSWME 769



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 126/453 (27%), Positives = 221/453 (48%), Gaps = 39/453 (8%)

Query: 59  SDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFR 118
           ++ + +  N +++ YAK      A +LF  MP RD  SWN+I++ + Q+G ++ +L++F 
Sbjct: 88  TEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFV 147

Query: 119 EMYLCGFVLKAELLAG-IISLCSQIGELELGRQIHALV--------------IVD----- 158
            M   G  L      G ++  C  +G  E+  Q+  L+              +VD     
Sbjct: 148 SMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRC 207

Query: 159 GSFEL-----------SVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCI 207
           G+ +            ++    ++L  Y+K H    AL +F+ M  R+ VSW  +IS   
Sbjct: 208 GAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALS 267

Query: 208 DSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
            S      +D+   M  +GV+P   T T  L ACA L  L  GK +H          D +
Sbjct: 268 KSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPY 327

Query: 268 LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
           +++A++ +Y +C      A+ +F   + ++ V W+ +I G+ Q G  SE+++LF++MR E
Sbjct: 328 VASAMVELYAKCG-CFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAE 386

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
            +  +   L  ++S C     +  G  +H   +K+G    V + N+L++MY+KCG++ ++
Sbjct: 387 LMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNA 446

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHA 447
             IFN MA RD VSWT +I+ Y   G   +A + F +M    V    IT  A+L A    
Sbjct: 447 ELIFNFMAERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRNV----ITWNAMLGAYIQH 502

Query: 448 GLVKEAETLFNNVMKEKKIALAIEHYACYVDLL 480
           G  ++   ++++++ EK +   I  +  YV L 
Sbjct: 503 GAEEDGLKMYSDMLTEKDV---IPDWVTYVTLF 532



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 107/439 (24%), Positives = 204/439 (46%), Gaps = 43/439 (9%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           ++H  G+  ++    S + ACA   + + +G QLH   +++    DP ++++++ +YAK 
Sbjct: 281 DMHGKGVRPDSTTYTSSLTACARLSSLE-WGKQLHVQVIRNLPHIDPYVASAMVELYAKC 339

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
              + A ++F  +  R+++SW  +I  F Q G +  S+E+F +M      +    LA +I
Sbjct: 340 GCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLI 399

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH---------------- 180
           S C    ++ LG Q+H+L +  G    +V VS +L+ +Y+KC +                
Sbjct: 400 SGCCNTMDICLGSQLHSLCLKSGHTR-AVVVSNSLISMYAKCGNLQNAELIFNFMAERDI 458

Query: 181 --WL-------------IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
             W               A   F+ M  RN ++W AM+   I     + G+ ++  M  E
Sbjct: 459 VSWTGMITAYSQVGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTE 518

Query: 226 -GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
             V P  VT   +   CA++   + G  I G+    G   D  +  A++ MY +C   + 
Sbjct: 519 KDVIPDWVTYVTLFRGCADIGANKLGDQIIGHTVKVGLILDTSVVNAVITMYSKCGR-IS 577

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
            AR  F+    KD+V W+++I GYSQ G   +A+++F  +  +  +P+ ++ +A+LS C+
Sbjct: 578 EARKAFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCS 637

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIG----NALMNMYSKCGSITSSHQIFNEMAARDFV 400
               +  G     Y      + ++S G    + ++++  + G +  +  + +EM  +   
Sbjct: 638 HSGLVEEG---KFYFDMMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTA 694

Query: 401 S-WTTLISGYGFHGYGEEA 418
             W  L+S    HG  + A
Sbjct: 695 EVWGALLSACKTHGNNDLA 713



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 76/334 (22%), Positives = 128/334 (38%), Gaps = 70/334 (20%)

Query: 234 LTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPAR-IIFER 292
           L   L +C     L   + +H      G      L   L+H Y  C  AL  AR ++ + 
Sbjct: 28  LADALRSCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCG-ALSDARNLLRDE 86

Query: 293 TKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE---------------------- 330
               +V+  + ++ GY++ G LS+A++LF RM    +                       
Sbjct: 87  ITEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIF 146

Query: 331 ----------PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
                     PN+ T   ++ SC    +    L +   + K     D  +  AL++M  +
Sbjct: 147 VSMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVR 206

Query: 381 CGSI-------------------------TSSH------QIFNEMAARDFVSWTTLISGY 409
           CG++                           SH      +IF  M  RD VSW  +IS  
Sbjct: 207 CGAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISAL 266

Query: 410 GFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA 469
              G   EAL + ++M   GV PD+ T  + L+AC     ++  + L   V++       
Sbjct: 267 SKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLP---H 323

Query: 470 IEHY--ACYVDLLGKSGKIEDACKVVSTMPMKPS 501
           I+ Y  +  V+L  K G  ++A +V S++  + S
Sbjct: 324 IDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNS 357



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 98/207 (47%), Gaps = 2/207 (0%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E  L +Y   L    +  +     ++ + CA    ++  G Q+    +K G   D  + N
Sbjct: 506 EDGLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGANK-LGDQIIGHTVKVGLILDTSVVN 564

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           ++I+MY+K  +   A + FD +  +D +SWN++I  ++Q+G   +++E+F ++   G   
Sbjct: 565 AVITMYSKCGRISEARKAFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDILNKGAKP 624

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
                  ++S CS  G +E G+    ++  D +    +   + ++DL  +  H + A  +
Sbjct: 625 DYISYVAVLSGCSHSGLVEEGKFYFDMMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKNL 684

Query: 188 FEQMVIRNEVS-WTAMISGCIDSQNYD 213
            ++M ++     W A++S C    N D
Sbjct: 685 IDEMPMKPTAEVWGALLSACKTHGNND 711



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 125/302 (41%), Gaps = 60/302 (19%)

Query: 277 CECTEALHPARIIFER---TKVKDVV-IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPN 332
           C    AL  AR +  R     +  VV + ++++  Y   G LS+A  L   +R E  EPN
Sbjct: 35  CGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNL---LRDEITEPN 91

Query: 333 SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFN 392
            +T                                    N +MN Y+K GS++ + ++F 
Sbjct: 92  VIT-----------------------------------HNIMMNGYAKLGSLSDAVELFG 116

Query: 393 EMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE-PDAITVLAILSACNHAGLVK 451
            M  RD  SW T++SGY   G    AL +F+ M+++G   P+A T   ++ +C   G  +
Sbjct: 117 RMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQTGDSLPNAFTFGCVMKSCGALGWHE 176

Query: 452 EAETLFNNVMK-----EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILS 506
            A  L   + K     +  +  A+      VD+L + G ++ A K  S +         S
Sbjct: 177 VALQLLGLLSKFDSQDDPDVQTAL------VDMLVRCGAMDFASKQFSRIKNPTIICRNS 230

Query: 507 SLVSACRIHGRLEVAEMLAHQLIEAEPE-NAANYTLLSMVCSESGNWLGAEEVWRVMRAK 565
            LV   + HG     E     + ++ PE +  ++ ++    S+SG    A ++   M  K
Sbjct: 231 MLVGYAKSHGVDHALE-----IFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGK 285

Query: 566 GL 567
           G+
Sbjct: 286 GV 287


>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
 gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
          Length = 513

 Score =  304 bits (779), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 176/513 (34%), Positives = 284/513 (55%), Gaps = 39/513 (7%)

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           N+L+S YA   +P++A+     + YR  +          ++GF         +M+    V
Sbjct: 3   NALVSGYAIGDRPKTAF-----LVYRRIV----------KDGF-------LPDMFTFPAV 40

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
           LK+         C++   +  GRQ+H ++I  G F  +++V  +L+  YS C  +  A R
Sbjct: 41  LKS---------CAKFVGIGEGRQVHGVIIKMG-FVCNIYVENSLVHFYSVCKRFGDASR 90

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VF++M++R+ VSWT +ISG + +  +D  + LF  M    V+P   T   VL+AC     
Sbjct: 91  VFDEMLVRDVVSWTGVISGYVRAGLFDEAVGLFLRMD---VEPNAATFVSVLVACGRKGY 147

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L  GK IHG ++   F     +S ALM MY +C   L  A+ +F+    KD+V W+SII 
Sbjct: 148 LSVGKGIHGLSFKSAFGVGLEVSNALMDMYVKCG-CLPGAKQVFDELAEKDIVSWTSIIS 206

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           G  Q     EA++LF  M+   IEP+ + L ++LS+C R   L +G  VH +I +  + +
Sbjct: 207 GLVQCNCPKEALELFQDMQSSGIEPDGIILTSVLSACARLGALDYGRWVHEHIDRKAIKW 266

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           D+ IG A+++MY+KCG I  S QIFN M  ++ ++W  L++G   HG+  + L+LF EM 
Sbjct: 267 DIQIGTAMVDMYAKCGCIEMSMQIFNGMPHKNVLTWNALLNGLAMHGHAYKVLELFEEMV 326

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA--IEHYACYVDLLGKSG 484
             G+ P+ +T LAIL+AC H GLV E    F N MK ++  L   +EHY C VDLL ++ 
Sbjct: 327 RVGMRPNEVTFLAILTACCHCGLVNEGRQYF-NWMKGQQYNLPPRLEHYGCMVDLLCRAR 385

Query: 485 KIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSM 544
            +++A ++   MPM P  RI+ +L+SAC+ +G  E+ + +  + +E +  ++  Y LLS 
Sbjct: 386 LLDEALELTKAMPMSPDVRIMGALLSACKENGNTELPQEILDRFVELDSHDSGVYVLLSN 445

Query: 545 VCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           + + +  W     + R+M+ KG+ K  G + IE
Sbjct: 446 IHAINQRWDDVTRIRRLMKEKGIKKPPGSTVIE 478



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 112/370 (30%), Positives = 191/370 (51%), Gaps = 16/370 (4%)

Query: 198 SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
            + A++SG        T   ++R + ++G  P   T   VL +CA+   +  G+ +HG  
Sbjct: 1   PFNALVSGYAIGDRPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVI 60

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
              GF  + ++  +L+H Y  C      +R +F+   V+DVV W+ +I GY ++G   EA
Sbjct: 61  IKMGFVCNIYVENSLVHFYSVCKRFGDASR-VFDEMLVRDVVSWTGVISGYVRAGLFDEA 119

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
           + LF RM    +EPN+ T +++L +C R+ +LS G G+H    K+     + + NALM+M
Sbjct: 120 VGLFLRM---DVEPNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSNALMDM 176

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           Y KCG +  + Q+F+E+A +D VSWT++ISG       +EAL+LF +MQ SG+EPD I +
Sbjct: 177 YVKCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIIL 236

Query: 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
            ++LSAC   G +     +  ++   K I   I+     VD+  K G IE + ++ + MP
Sbjct: 237 TSVLSACARLGALDYGRWVHEHI-DRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIFNGMP 295

Query: 498 MKPSTRILSSLVSACRIHGR-LEVAEMLAHQLIEAEPENAANYTLLSMVCSESG------ 550
            K +    ++L++   +HG   +V E+    +      N   +  +   C   G      
Sbjct: 296 HK-NVLTWNALLNGLAMHGHAYKVLELFEEMVRVGMRPNEVTFLAILTACCHCGLVNEGR 354

Query: 551 ---NWLGAEE 557
              NW+  ++
Sbjct: 355 QYFNWMKGQQ 364



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 121/448 (27%), Positives = 207/448 (46%), Gaps = 54/448 (12%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACA-YAQTHQHFGLQLHCTALKSGSDADPVISN 67
           +T  L  + +   G   +    P+V+K+CA +    +  G Q+H   +K G   +  + N
Sbjct: 16  KTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGE--GRQVHGVIIKMGFVCNIYVEN 73

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           SL+  Y+   +   A ++FDEM  RD +SW  +I+ + + G +  ++ +F  M +     
Sbjct: 74  SLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAVGLFLRMDV---EP 130

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
            A     ++  C + G L +G+ IH L     +F + + VS AL+D+Y KC     A +V
Sbjct: 131 NAATFVSVLVACGRKGYLSVGKGIHGLSF-KSAFGVGLEVSNALMDMYVKCGCLPGAKQV 189

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F+++  ++ VSWT++ISG +        ++LF+ MQ  G++P  + LT VL ACA L  L
Sbjct: 190 FDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIILTSVLSACARLGAL 249

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
             G+ +H +       +D  +  A++ MY +C   +  +  IF     K+V+ W++++ G
Sbjct: 250 DYGRWVHEHIDRKAIKWDIQIGTAMVDMYAKCG-CIEMSMQIFNGMPHKNVLTWNALLNG 308

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
            +  G   + ++LF  M    + PN VT LAIL++C             C+         
Sbjct: 309 LAMHGHAYKVLELFEEMVRVGMRPNEVTFLAILTAC-------------CH--------- 346

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYG-------FHGYGEEALQ 420
                        CG +    Q FN M  + + +    +  YG            +EAL+
Sbjct: 347 -------------CGLVNEGRQYFNWMKGQQY-NLPPRLEHYGCMVDLLCRARLLDEALE 392

Query: 421 LFLEMQESGVEPDAITVLAILSACNHAG 448
           L   M  S   PD   + A+LSAC   G
Sbjct: 393 LTKAMPMS---PDVRIMGALLSACKENG 417



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 158/330 (47%), Gaps = 20/330 (6%)

Query: 2   VSKHFYEQTLHLY-KQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           V    +++ + L+ + ++ P     N A   SV+ AC   + +   G  +H  + KS   
Sbjct: 111 VRAGLFDEAVGLFLRMDVEP-----NAATFVSVLVACG-RKGYLSVGKGIHGLSFKSAFG 164

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
               +SN+L+ MY K      A Q+FDE+  +D +SW SII+   Q      +LE+F++M
Sbjct: 165 VGLEVSNALMDMYVKCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDM 224

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
              G      +L  ++S C+++G L+ GR +H   I   + +  + + TA++D+Y+KC  
Sbjct: 225 QSSGIEPDGIILTSVLSACARLGALDYGRWVHEH-IDRKAIKWDIQIGTAMVDMYAKCGC 283

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
             +++++F  M  +N ++W A+++G     +    ++LF  M R G++P  VT   +L A
Sbjct: 284 IEMSMQIFNGMPHKNVLTWNALLNGLAMHGHAYKVLELFEEMVRVGMRPNEVTFLAILTA 343

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARII---FERTKV-- 295
           C     +  G+    +         ++L   L H  C   + L  AR++    E TK   
Sbjct: 344 CCHCGLVNEGRQYFNWMK----GQQYNLPPRLEHYGC-MVDLLCRARLLDEALELTKAMP 398

Query: 296 --KDVVIWSSIIRGYSQSGDLSEAMKLFSR 323
              DV I  +++    ++G+     ++  R
Sbjct: 399 MSPDVRIMGALLSACKENGNTELPQEILDR 428


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  304 bits (778), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 177/541 (32%), Positives = 277/541 (51%), Gaps = 56/541 (10%)

Query: 86  FDEMPY----------RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
           FD +PY           + + WN+++     +   V  LEM+  M   G V  A     +
Sbjct: 30  FDGLPYAVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFL 89

Query: 136 ISLCSQIGELELGRQIHALV------------------------------IVDGSFELSV 165
           +  C++    E GRQIHA V                              + D S +  V
Sbjct: 90  LKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDV 149

Query: 166 FVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
              TAL+  Y+       A +VF+ +  R+ VSW AMI+G +++  Y+  ++LF+ M R 
Sbjct: 150 VSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRT 209

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH-------LSAALMHMYCE 278
            V+P   TL  VL ACA+   +  G+ IH          DHH       +  A + +Y +
Sbjct: 210 NVRPDEGTLVSVLSACAQSGSIELGREIHTLVD------DHHGFGSSLKIVNAFIGLYSK 263

Query: 279 CTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLA 338
           C + +  A  +FE    KDVV W+++I GY+      EA+ LF  M      PN VT+L+
Sbjct: 264 CGD-VEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLS 322

Query: 339 ILSSCTRQSFLSHGLGVHCYIMK--AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA 396
           +L +C     +  G  +H YI K   G+    ++  +L++MY+KCG I ++HQ+FN M  
Sbjct: 323 VLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMH 382

Query: 397 RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETL 456
           +   SW  +I G+  HG    A  LF  M+++G+EPD IT++ +LSAC+H+GL+     +
Sbjct: 383 KSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHI 442

Query: 457 FNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG 516
           F +V ++  I   +EHY C +DLLG +G  ++A +++  MPM+P   I  SL+ AC++HG
Sbjct: 443 FKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHG 502

Query: 517 RLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
            LE+AE  A +L+E EPEN+ +Y LLS + + +G W     +  V+  KG+ K  G S I
Sbjct: 503 NLELAESFAQKLMEIEPENSGSYVLLSNIYATAGRWEDVARIREVLNGKGMKKVPGCSSI 562

Query: 577 E 577
           E
Sbjct: 563 E 563



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 137/311 (44%), Gaps = 26/311 (8%)

Query: 5   HFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALK--SGSDAD 62
           + Y++ L L+ QE+  SG   N   + SV+ ACA+       G  +H    K   G    
Sbjct: 296 NLYKEALLLF-QEMLRSGESPNDVTMLSVLPACAHLGAID-IGRWIHVYIDKRLKGVTNG 353

Query: 63  PVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL 122
             +  SLI MYAK    E+A+Q+F+ M ++   SWN++I  F  +G    + ++F  M  
Sbjct: 354 SALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRK 413

Query: 123 CGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL 182
            G       L G++S CS  G L+LGR I   V  D +    +     ++DL      + 
Sbjct: 414 NGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFK 473

Query: 183 IALRVFEQMVIRNE-VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA- 240
            A  +   M +  + V W +++  C    N +      + +    ++P   + + VLL+ 
Sbjct: 474 EAEEIIHMMPMEPDGVIWCSLLKACKMHGNLELAESFAQKLME--IEPEN-SGSYVLLSN 530

Query: 241 ----------CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP-ARII 289
                      A +R++ NGK +     C   + D     +++H +    + LHP +R I
Sbjct: 531 IYATAGRWEDVARIREVLNGKGMKKVPGCSSIEID-----SVVHEFI-IGDKLHPQSREI 584

Query: 290 FERTKVKDVVI 300
           +   +  DV++
Sbjct: 585 YRMLEEMDVLL 595


>gi|297738941|emb|CBI28186.3| unnamed protein product [Vitis vinifera]
          Length = 760

 Score =  304 bits (778), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 185/544 (34%), Positives = 294/544 (54%), Gaps = 34/544 (6%)

Query: 38  AYAQTHQHF--GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTI 95
           A+   H+ F  G QLH   LK G D +  + N+LI+MY++  +   A         R   
Sbjct: 184 AFCSDHEGFIFGFQLHSRILKCGLDCEVFVGNALITMYSRCCRLVEAR--------RGNS 235

Query: 96  SWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALV 155
              +I+              +F EM   G  L      G IS C    E ELGRQIH+L 
Sbjct: 236 GLEAIL--------------VFLEMLKEGMKLDHVSFTGAISACGHGKEFELGRQIHSLA 281

Query: 156 IVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTG 215
           +  G ++  V V   L+  YSKC     A  VFE ++ RN VSWT MIS      + +  
Sbjct: 282 VKIG-YDTHVKVCNVLISTYSKCEDIEDAKLVFESIIDRNVVSWTTMIS-----ISEEDA 335

Query: 216 IDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHM 275
             LF  M+R+GV P  VT   ++ A      +  G+ IHG      F  + ++S +L+ M
Sbjct: 336 TSLFNEMRRDGVYPNDVTFVGLIHAITMKNLVEEGQMIHGVCVKTSFLSELNVSNSLITM 395

Query: 276 YCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVT 335
           Y +  E++  +  +FE    ++++ W+S+I GY+Q+G   EA++ F    +E   PN  T
Sbjct: 396 YAKF-ESMSDSMKVFEELNYREIISWNSLISGYAQNGLWQEALQTFLSALMES-RPNEFT 453

Query: 336 LLAILSSCTRQSFLS--HGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNE 393
             ++LSS      +S  HG   H +I+K GLN +  + +AL++MY+K GSI  S  +F+E
Sbjct: 454 FGSVLSSIASAEAISMRHGQRCHSHILKLGLNTNPIVSSALLDMYAKRGSICESLGVFSE 513

Query: 394 MAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEA 453
              ++ V+WT +IS +  HG  E  + LF +M+  GV+PD+IT LA+++AC   G+V   
Sbjct: 514 TPLKNEVAWTAIISAHARHGDYEAVMNLFKDMEREGVKPDSITFLAVITACGRKGMVDTG 573

Query: 454 ETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACR 513
             LFN+++K+  I  + EHY+  VD+LG++G++++A + V  +P      +L SL+ ACR
Sbjct: 574 YQLFNSMVKDHLIEPSPEHYSSMVDMLGRAGRLKEAEEFVGQIPGGAGLSVLQSLLGACR 633

Query: 514 IHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGF 573
           IHG +++A+ +A  LIE EP  + +Y L+S + +E G W    ++ + MR +G+ K  GF
Sbjct: 634 IHGNVDMAKRVADDLIEMEPMGSGSYVLMSNLYAEKGEWEKVAKIRKGMRERGVRKEIGF 693

Query: 574 SRIE 577
           S ++
Sbjct: 694 SWVD 697



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 143/552 (25%), Positives = 264/552 (47%), Gaps = 54/552 (9%)

Query: 9   QTLHLYKQELHPSGLYSN--TAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           + L L+K++L   G   N     +  V+KAC         G Q+H  A+ SG  +   + 
Sbjct: 61  EALDLFKKQLQ-WGFVGNIDQVTVAIVLKACC---GDSKLGCQIHAFAISSGFISHVTVP 116

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           NSL++MY K    + A  +F+ +   D +SWN++++ F ++     +L     M   G  
Sbjct: 117 NSLMNMYCKAGLFDRALVVFENLNNPDIVSWNTVLSGFQRSD---DALNFALRMNFTGVA 173

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
             A     +++ CS       G Q+H+ ++  G  +  VFV  AL+ +YS+C        
Sbjct: 174 FDAVTCTTVLAFCSDHEGFIFGFQLHSRILKCG-LDCEVFVGNALITMYSRCCR------ 226

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGID---LFRAMQREGVKPTRVTLTIVLLACAE 243
                               ++++  ++G++   +F  M +EG+K   V+ T  + AC  
Sbjct: 227 -------------------LVEARRGNSGLEAILVFLEMLKEGMKLDHVSFTGAISACGH 267

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
            ++   G+ IH  A   G+D    +   L+  Y +C E +  A+++FE    ++VV W++
Sbjct: 268 GKEFELGRQIHSLAVKIGYDTHVKVCNVLISTYSKC-EDIEDAKLVFESIIDRNVVSWTT 326

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           +I     S    +A  LF+ MR + + PN VT + ++ + T ++ +  G  +H   +K  
Sbjct: 327 MI-----SISEEDATSLFNEMRRDGVYPNDVTFVGLIHAITMKNLVEEGQMIHGVCVKTS 381

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
              ++++ N+L+ MY+K  S++ S ++F E+  R+ +SW +LISGY  +G  +EALQ FL
Sbjct: 382 FLSELNVSNSLITMYAKFESMSDSMKVFEELNYREIISWNSLISGYAQNGLWQEALQTFL 441

Query: 424 E-MQESGVEPDAITVLAILSACNHAGLV--KEAETLFNNVMKEKKIALAIEHYACYVDLL 480
             + ES   P+  T  ++LS+   A  +  +  +   ++++K       I   A  +D+ 
Sbjct: 442 SALMES--RPNEFTFGSVLSSIASAEAISMRHGQRCHSHILKLGLNTNPIVSSA-LLDMY 498

Query: 481 GKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYT 540
            K G I ++  V S  P+K      ++++SA   HG  E A M   + +E E     + T
Sbjct: 499 AKRGSICESLGVFSETPLKNEV-AWTAIISAHARHGDYE-AVMNLFKDMEREGVKPDSIT 556

Query: 541 LLSMV--CSESG 550
            L+++  C   G
Sbjct: 557 FLAVITACGRKG 568



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 125/478 (26%), Positives = 210/478 (43%), Gaps = 39/478 (8%)

Query: 73  YAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELL 132
           +  F   +  +Q  D+ P     S N  +    +    + +L++F++    GFV   + +
Sbjct: 22  FKYFHSSKHVHQPLDQSPQTTIASLNRSMLTALRRNLSLEALDLFKKQLQWGFVGNIDQV 81

Query: 133 AGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV 192
              I L +  G+ +LG QIHA  I  G F   V V  +L+++Y K   +  AL VFE + 
Sbjct: 82  TVAIVLKACCGDSKLGCQIHAFAISSG-FISHVTVPNSLMNMYCKAGLFDRALVVFENLN 140

Query: 193 IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKA 252
             + VSW  ++SG    Q  D  ++    M   GV    VT T VL  C++      G  
Sbjct: 141 NPDIVSWNTVLSGF---QRSDDALNFALRMNFTGVAFDAVTCTTVLAFCSDHEGFIFGFQ 197

Query: 253 IHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSG 312
           +H     CG D +  +  AL+ MY  C       R++  R             RG S   
Sbjct: 198 LHSRILKCGLDCEVFVGNALITMYSRC------CRLVEAR-------------RGNSG-- 236

Query: 313 DLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN 372
              EA+ +F  M  E ++ + V+    +S+C        G  +H   +K G +  V + N
Sbjct: 237 --LEAILVFLEMLKEGMKLDHVSFTGAISACGHGKEFELGRQIHSLAVKIGYDTHVKVCN 294

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
            L++ YSKC  I  +  +F  +  R+ VSWTT+IS        E+A  LF EM+  GV P
Sbjct: 295 VLISTYSKCEDIEDAKLVFESIIDRNVVSWTTMIS-----ISEEDATSLFNEMRRDGVYP 349

Query: 433 DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKV 492
           + +T + ++ A     LV+E + +    +K   ++  +      + +  K   + D+ KV
Sbjct: 350 NDVTFVGLIHAITMKNLVEEGQMIHGVCVKTSFLS-ELNVSNSLITMYAKFESMSDSMKV 408

Query: 493 VSTMPMKPSTRILS--SLVSACRIHGRLEVA-EMLAHQLIEAEPENAANYTLLSMVCS 547
              +  +    I+S  SL+S    +G  + A +     L+E+ P      ++LS + S
Sbjct: 409 FEELNYR---EIISWNSLISGYAQNGLWQEALQTFLSALMESRPNEFTFGSVLSSIAS 463



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/267 (31%), Positives = 134/267 (50%), Gaps = 22/267 (8%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
            E+   G+Y N      +I A       +  G  +H   +K+   ++  +SNSLI+MYAK
Sbjct: 340 NEMRRDGVYPNDVTFVGLIHAITMKNLVEE-GQMIHGVCVKTSFLSELNVSNSLITMYAK 398

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMF--------REMYLCGFVL 127
           F     + ++F+E+ YR+ ISWNS+I+ + QNG +  +L+ F           +  G VL
Sbjct: 399 FESMSDSMKVFEELNYREIISWNSLISGYAQNGLWQEALQTFLSALMESRPNEFTFGSVL 458

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
            +   A  IS       +  G++ H+ ++  G    +  VS+ALLD+Y+K      +L V
Sbjct: 459 SSIASAEAIS-------MRHGQRCHSHILKLG-LNTNPIVSSALLDMYAKRGSICESLGV 510

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F +  ++NEV+WTA+IS      +Y+  ++LF+ M+REGVKP  +T   V+ AC      
Sbjct: 511 FSETPLKNEVAWTAIISAHARHGDYEAVMNLFKDMEREGVKPDSITFLAVITACG----- 565

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMH 274
           R G    GY        DH +  +  H
Sbjct: 566 RKGMVDTGYQLFNSMVKDHLIEPSPEH 592



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 80/154 (51%), Gaps = 3/154 (1%)

Query: 24  YSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAY 83
           ++  ++L S+  A A +  H   G + H   LK G + +P++S++L+ MYAK      + 
Sbjct: 452 FTFGSVLSSIASAEAISMRH---GQRCHSHILKLGLNTNPIVSSALLDMYAKRGSICESL 508

Query: 84  QLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIG 143
            +F E P ++ ++W +II+   ++G Y   + +F++M   G    +     +I+ C + G
Sbjct: 509 GVFSETPLKNEVAWTAIISAHARHGDYEAVMNLFKDMEREGVKPDSITFLAVITACGRKG 568

Query: 144 ELELGRQIHALVIVDGSFELSVFVSTALLDLYSK 177
            ++ G Q+   ++ D   E S    ++++D+  +
Sbjct: 569 MVDTGYQLFNSMVKDHLIEPSPEHYSSMVDMLGR 602


>gi|357128207|ref|XP_003565766.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Brachypodium distachyon]
          Length = 734

 Score =  304 bits (778), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 169/530 (31%), Positives = 290/530 (54%), Gaps = 4/530 (0%)

Query: 50  LHCTALKSGSDADPV-ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           +H  A K  S +  V +S +L++MY K      A  +FDEMP+R+ +SW +++  +    
Sbjct: 139 VHALACKLPSASSNVFVSTALLNMYCKLGLIPDAQLVFDEMPHRNEVSWAAMVAGYAARK 198

Query: 109 FYVRSLEMFREMYLCGFVLKAELLA-GIISLCSQIGELELGRQIHALVIVDGSFELSVFV 167
               + E+FR+M     + K E +A  ++S  S    L +G Q+H LV+ DG     V V
Sbjct: 199 CSQEAFELFRQMLGECPLHKNEFVATAVLSAISVPLGLPMGVQVHGLVVKDGMVGF-VSV 257

Query: 168 STALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV 227
             +L+ +Y+K      A  VFE    RN ++W+AMI+G   + N ++ + +F  M   G 
Sbjct: 258 ENSLVTMYAKAGCMDAAFHVFESSKERNSITWSAMITGYSQNGNAESAVRMFSQMHAAGF 317

Query: 228 KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPAR 287
            PT  TL  VL AC+++  L  GK  HG     GF+   ++ +AL+ MY +C   +  A+
Sbjct: 318 PPTEFTLVGVLNACSDVGTLMEGKQAHGLMVKLGFEVQVYVKSALVDMYAKCG-CIGDAK 376

Query: 288 IIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQS 347
             F +    D+V+W++++ G+ Q+G+  +A+ L++RM  E + PN++T+ ++L +C   +
Sbjct: 377 ECFNQFSELDIVLWTAMVTGHVQNGEFEQALMLYARMDKEGVFPNTLTITSLLRACAGLA 436

Query: 348 FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLIS 407
            L  G  +H  I+K G     S+G+AL  MYSKCG++     +F  M  RD ++W ++IS
Sbjct: 437 ALEPGKQLHTQILKFGFGLGASVGSALSTMYSKCGNLEDGMVVFRRMPHRDVIAWNSIIS 496

Query: 408 GYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIA 467
           G+  +G G +A+ LF EM+  G  PD +T + +L AC+H GLV    T F +++K+  + 
Sbjct: 497 GFSQNGRGNDAINLFEEMKLEGTAPDPVTFINVLCACSHMGLVDRGWTYFRSMIKDYGLT 556

Query: 468 LAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQ 527
             ++HYAC VD+L ++G + +A   + ++ +   T +   ++ ACR     +V      +
Sbjct: 557 PRLDHYACMVDILSRAGMLSEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGEK 616

Query: 528 LIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           L++    ++A Y LLS + +    W   E V  +M+  G+SK  G S +E
Sbjct: 617 LMDLGTGDSAAYILLSNIYAAQRKWNDVERVRYLMKLVGVSKDPGCSWVE 666



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 160/543 (29%), Positives = 265/543 (48%), Gaps = 20/543 (3%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSK--PESAYQLFDEMP--YRDTISWNSIIN 102
           G  LH  ALKSGS +   +SNSLI+ Y+ F +    +A+ +F ++P   RD  SWNS++N
Sbjct: 31  GEALHAWALKSGSSSHAPVSNSLITFYSSFPRLFLPAAFAVFADIPAAARDVASWNSLLN 90

Query: 103 CFTQNGFYVRSLEMFREMYLCGFVLKAE-LLAGIISLCSQIGELELGRQIHALVIVDGSF 161
             + +   + +L  FR M     +L +    A   +  ++      G  +HAL     S 
Sbjct: 91  PLSHHR-PLAALSHFRSMLSSSTILPSPHSFAAAFTAAARAHSASAGAVVHALACKLPSA 149

Query: 162 ELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRA 221
             +VFVSTALL++Y K      A  VF++M  RNEVSW AM++G    +      +LFR 
Sbjct: 150 SSNVFVSTALLNMYCKLGLIPDAQLVFDEMPHRNEVSWAAMVAGYAARKCSQEAFELFRQ 209

Query: 222 MQRE-GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCE-- 278
           M  E  +       T VL A +    L  G  +HG     G      +  +L+ MY +  
Sbjct: 210 MLGECPLHKNEFVATAVLSAISVPLGLPMGVQVHGLVVKDGMVGFVSVENSLVTMYAKAG 269

Query: 279 CTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLA 338
           C +A   A  +FE +K ++ + WS++I GYSQ+G+   A+++FS+M      P   TL+ 
Sbjct: 270 CMDA---AFHVFESSKERNSITWSAMITGYSQNGNAESAVRMFSQMHAAGFPPTEFTLVG 326

Query: 339 ILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARD 398
           +L++C+    L  G   H  ++K G    V + +AL++MY+KCG I  + + FN+ +  D
Sbjct: 327 VLNACSDVGTLMEGKQAHGLMVKLGFEVQVYVKSALVDMYAKCGCIGDAKECFNQFSELD 386

Query: 399 FVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFN 458
            V WT +++G+  +G  E+AL L+  M + GV P+ +T+ ++L AC     ++  + L  
Sbjct: 387 IVLWTAMVTGHVQNGEFEQALMLYARMDKEGVFPNTLTITSLLRACAGLAALEPGKQLHT 446

Query: 459 NVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRL 518
            ++K     L     +    +  K G +ED   V   MP +      +S++S    +GR 
Sbjct: 447 QILK-FGFGLGASVGSALSTMYSKCGNLEDGMVVFRRMPHR-DVIAWNSIISGFSQNGRG 504

Query: 519 EVAEMLAHQL-IEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
             A  L  ++ +E    +   +  +   CS  G     +  W   R+  + K YG +   
Sbjct: 505 NDAINLFEEMKLEGTAPDPVTFINVLCACSHMGL---VDRGWTYFRS--MIKDYGLTPRL 559

Query: 578 NEY 580
           + Y
Sbjct: 560 DHY 562



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 148/336 (44%), Gaps = 22/336 (6%)

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI-IFER--TKVKDVVIWSSI 304
           R+G+A+H +A   G      +S +L+  Y        PA   +F       +DV  W+S+
Sbjct: 29  RDGEALHAWALKSGSSSHAPVSNSLITFYSSFPRLFLPAAFAVFADIPAAARDVASWNSL 88

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVH---CYIMK 361
           +   S    L+      S +    I P+  +  A  ++  R    S G  VH   C +  
Sbjct: 89  LNPLSHHRPLAALSHFRSMLSSSTILPSPHSFAAAFTAAARAHSASAGAVVHALACKLPS 148

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
           A  N  V +  AL+NMY K G I  +  +F+EM  R+ VSW  +++GY      +EA +L
Sbjct: 149 ASSN--VFVSTALLNMYCKLGLIPDAQLVFDEMPHRNEVSWAAMVAGYAARKCSQEAFEL 206

Query: 422 FLEM-QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIA-LAIEHYACYVDL 479
           F +M  E  +  +     A+LSA +    +     +   V+K+  +  +++E+    V +
Sbjct: 207 FRQMLGECPLHKNEFVATAVLSAISVPLGLPMGVQVHGLVVKDGMVGFVSVEN--SLVTM 264

Query: 480 LGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANY 539
             K+G ++ A  V  +   + S    S++++    +G  E A  +  Q+  A       +
Sbjct: 265 YAKAGCMDAAFHVFESSKERNSI-TWSAMITGYSQNGNAESAVRMFSQM-HAAGFPPTEF 322

Query: 540 TLLSMV--CSESGNWLGAEEVWRVMRAKGLSKSYGF 573
           TL+ ++  CS+ G  +  ++      A GL    GF
Sbjct: 323 TLVGVLNACSDVGTLMEGKQ------AHGLMVKLGF 352


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  304 bits (778), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 173/559 (30%), Positives = 306/559 (54%), Gaps = 5/559 (0%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
            GL  + A + +++  C+  + +   G+ +H  A+K G   + ++ N+LI MY+K     
Sbjct: 307 DGLIPDVATMVTLLPVCS-GEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLS 365

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE--LLAGIISL 138
            A  LF ++  +  +SWNS+I  +++ GF   + ++ R+M++   +++     +  ++  
Sbjct: 366 EAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPA 425

Query: 139 CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
           C +  EL   R +H   +   SF+    ++ A +  Y+KC   + A  VF  M  ++  S
Sbjct: 426 CLEESELLSLRALHGYSLRH-SFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSS 484

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258
           W A+I G   + +    +D +  M R G+ P   ++  +LLAC  L  L+ GK IHG+  
Sbjct: 485 WNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVL 544

Query: 259 CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAM 318
             G + +  ++ +L+ +Y  C++  +  R  FER   K+ V W++++ GYSQ+   +EA+
Sbjct: 545 RNGLEMNSFVAVSLLSLYFHCSKPFY-GRTYFERMGDKNSVCWNAMLSGYSQNELPNEAL 603

Query: 319 KLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMY 378
            LF +M  + +EP+ + + +IL +C++ S L  G  VHC+ +K  L  D  +  +LM+MY
Sbjct: 604 SLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMY 663

Query: 379 SKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
           +K G +  S +IFN +  ++  SW  +I+G+G HG G +A++LF +M+ S  +PD  T L
Sbjct: 664 AKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFL 723

Query: 439 AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPM 498
            +L AC HAGLV E       +    K+   +EHYAC +D+LG++G++ +A   ++ MP 
Sbjct: 724 GVLQACCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPE 783

Query: 499 KPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEV 558
           +P  +I SSL+S+   +  LE+ E  A +L+  E   A +Y LLS + + +G W     V
Sbjct: 784 EPDAKIWSSLLSSSITYVDLEMGEKFAEKLLALEANKADSYILLSNLYATAGKWDVVRMV 843

Query: 559 WRVMRAKGLSKSYGFSRIE 577
            + M+   L K  G S IE
Sbjct: 844 RQKMKDLSLQKDVGCSWIE 862



 Score =  225 bits (574), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 141/525 (26%), Positives = 265/525 (50%), Gaps = 19/525 (3%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V    Y++ +H + + +  +    +    P +IKAC   +   H G  +H  A+K G   
Sbjct: 185 VRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACT-GKCDIHLGKSVHGMAVKMGLIM 243

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D  + N++I++Y K    + A +LFD+MP ++ ISWNS+I  F++NGF++ +   FR + 
Sbjct: 244 DLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLL 303

Query: 122 LC--GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH 179
               G +     +  ++ +CS  G +++G  IH + +  G     + V  AL+D+YSKC 
Sbjct: 304 ESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVH-ELMVCNALIDMYSKCG 362

Query: 180 HWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRA--MQREGVKPTRVTLTIV 237
               A  +F ++  ++ VSW +MI             DL R   M+ E ++   VT+  +
Sbjct: 363 CLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNL 422

Query: 238 LLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKD 297
           L AC E  +L + +A+HGY+    F +   ++ A +  Y +C   +    + F     K 
Sbjct: 423 LPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFF-GMNTKS 481

Query: 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHC 357
           V  W+++I G++Q+GD  +A+  +  M    I P+  +++++L +C R   L +G  +H 
Sbjct: 482 VSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHG 541

Query: 358 YIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEE 417
           ++++ GL  +  +  +L+++Y  C         F  M  ++ V W  ++SGY  +    E
Sbjct: 542 FVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNE 601

Query: 418 ALQLFLEMQESGVEPDAITVLAILSACNH---AGLVKEAE--TLFNNVMKEKKIALAIEH 472
           AL LF +M   G+EPD I + +IL AC+     GL KE     L N++M++  +A ++  
Sbjct: 602 ALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSL-- 659

Query: 473 YACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGR 517
               +D+  KSG +  + ++ + +  K      + +++   +HG+
Sbjct: 660 ----MDMYAKSGFLGHSQRIFNRLNGKEVAS-WNVMITGFGVHGQ 699



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 111/407 (27%), Positives = 207/407 (50%), Gaps = 7/407 (1%)

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
            D V++  LI+MY+    P  +  +FD +  ++   WN++++ + +N  Y  ++  F E+
Sbjct: 141 GDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLEL 200

Query: 121 Y-LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH 179
             +  F         +I  C+   ++ LG+ +H + +  G   + +FV  A++ LY KC 
Sbjct: 201 ISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLI-MDLFVGNAMIALYGKCG 259

Query: 180 HWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM--QREGVKPTRVTLTIV 237
               A+ +F++M  +N +SW ++I G  ++  +      FR++    +G+ P   T+  +
Sbjct: 260 FLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTL 319

Query: 238 LLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKD 297
           L  C+   ++  G  IHG A   G   +  +  AL+ MY +C   L  A I+F + + K 
Sbjct: 320 LPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCG-CLSEAAILFRKIENKS 378

Query: 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRLER--IEPNSVTLLAILSSCTRQSFLSHGLGV 355
           VV W+S+I  YS+ G + E   L  +M +E   +E N VT+L +L +C  +S L     +
Sbjct: 379 VVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRAL 438

Query: 356 HCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYG 415
           H Y ++    +   I NA +  Y+KCGS+  +  +F  M  +   SW  +I G+  +G  
Sbjct: 439 HGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDP 498

Query: 416 EEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462
            +AL  + EM   G+ PD  +++++L AC   GL++  + +   V++
Sbjct: 499 IKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLR 545



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 175/323 (54%), Gaps = 8/323 (2%)

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
           + E +  ++  C Q   +E+GR++  ++ V   F     ++T L+ +YS C + L +  V
Sbjct: 106 RKEAMGMLLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLV 165

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLF-RAMQREGVKPTRVTLTIVLLACAELRD 246
           F++++ +N   W A++SG + ++ YD  I  F   +     +P   T   ++ AC    D
Sbjct: 166 FDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCD 225

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           +  GK++HG A   G   D  +  A++ +Y +C   L  A  +F++   ++++ W+S+IR
Sbjct: 226 IHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCG-FLDEAVELFDKMPEQNLISWNSLIR 284

Query: 307 GYSQSGDLSEAMKLFSRMRLERIE---PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           G+S++G   EA + F R  LE  +   P+  T++ +L  C+ +  +  G+ +H   +K G
Sbjct: 285 GFSENGFWLEAYRAF-RSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLG 343

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF- 422
           L  ++ + NAL++MYSKCG ++ +  +F ++  +  VSW ++I  Y   G+  E   L  
Sbjct: 344 LVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLR 403

Query: 423 -LEMQESGVEPDAITVLAILSAC 444
            + M+E  +E + +T+L +L AC
Sbjct: 404 KMWMEEELMEVNEVTILNLLPAC 426



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 157/322 (48%), Gaps = 12/322 (3%)

Query: 231 RVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDF--DHHLSAALMHMYCECTEALHPARI 288
           +  + ++L  C + +++  G+ +     C    F  D  L+  L+ MY  C   L  +R+
Sbjct: 107 KEAMGMLLQKCGQYKNVEIGRKLD-EMLCVSSQFSGDFVLNTRLITMYSICGYPLE-SRL 164

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM-RLERIEPNSVTLLAILSSCTRQS 347
           +F+R   K++  W++++ GY ++    EA+  F  +  +   +P++ T   ++ +CT + 
Sbjct: 165 VFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKC 224

Query: 348 FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLIS 407
            +  G  VH   +K GL  D+ +GNA++ +Y KCG +  + ++F++M  ++ +SW +LI 
Sbjct: 225 DIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIR 284

Query: 408 GYGFHGYGEEALQLFLEMQES--GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           G+  +G+  EA + F  + ES  G+ PD  T++ +L  C+  G V     +    +   K
Sbjct: 285 GFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAV---K 341

Query: 466 IALAIEHYAC--YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEM 523
           + L  E   C   +D+  K G + +A  +   +  K      S + +  R     E  ++
Sbjct: 342 LGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDL 401

Query: 524 LAHQLIEAEPENAANYTLLSMV 545
           L    +E E       T+L+++
Sbjct: 402 LRKMWMEEELMEVNEVTILNLL 423


>gi|359492976|ref|XP_002283668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 762

 Score =  304 bits (778), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 170/539 (31%), Positives = 294/539 (54%), Gaps = 13/539 (2%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           ++H   +K+G+  D  +   L+++YAK    E+A ++FDE+P R+ +SW +++  +  + 
Sbjct: 90  KIHAHIVKTGAHKDAFLMTFLVNVYAKCGTMETARKVFDELPRRNVVSWTTLMTGYVHDS 149

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
               ++++FREM   G       L   +S  S +   ELG+QIH   I     E    + 
Sbjct: 150 KPELAVQVFREMLEAGAYPTNYTLGTALSASSDLHSKELGKQIHGYSI-KYRIEFDASIG 208

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
            +L  LYSKC     A++ F ++  +N +SWT +IS   D+    TG+  F  M  E V+
Sbjct: 209 NSLCSLYSKCGSLECAVKAFRRIRDKNVISWTTVISAWGDNGEAATGLQFFVEMLSECVE 268

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
           P   TLT  L  C  ++ L  G  IH      GF+ +  +  ++M++Y +C   +H A+ 
Sbjct: 269 PNEFTLTSALSLCCVMQSLDIGTQIHSLTIKLGFESNLPIKNSIMYLYLKCG-WIHEAKK 327

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDL-----------SEAMKLFSRMRLERIEPNSVTLL 337
           +F+  +   +V W+++I G+++  D            +EA+ +F ++    ++P+  T  
Sbjct: 328 LFDEMETISLVTWNAMIAGHARMMDFAKDDLAAHQCGTEALSIFLKLNRSGMKPDLFTFS 387

Query: 338 AILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR 397
           ++LS C+    L  G  VH   +K G   DV +G AL+NMY+KCGSI  + + F EM+ R
Sbjct: 388 SVLSVCSSLVALEQGEQVHAQTIKTGFLSDVVVGTALVNMYNKCGSIERASKAFVEMSIR 447

Query: 398 DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLF 457
             +SWT++I+GY  +G  ++AL LF +M+ +GV P+ IT + +LSAC+HAG+V EA   F
Sbjct: 448 TLISWTSMITGYAQNGQPQQALLLFEDMRLAGVRPNKITFVGVLSACSHAGMVDEALDYF 507

Query: 458 NNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGR 517
             +  E KI   ++HYAC +D+  + G++++A   +  M ++P+  I S L++ CR  G+
Sbjct: 508 QMMKNEYKITPVMDHYACLIDMFVRLGRLDEAFDFIKEMDLEPNEFIWSILIAGCRSQGK 567

Query: 518 LEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
           LE+    A QL+  +P++   Y LL  +   +G W     V ++M+ + L +   +S I
Sbjct: 568 LELGFYAAEQLLNLKPKDTETYNLLLNMYLSAGKWKEVSRVRKMMKEEKLGRLKDWSWI 626



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 133/469 (28%), Positives = 229/469 (48%), Gaps = 26/469 (5%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           +E+  +G Y     L + + A +   + +  G Q+H  ++K   + D  I NSL S+Y+K
Sbjct: 159 REMLEAGAYPTNYTLGTALSASSDLHSKE-LGKQIHGYSIKYRIEFDASIGNSLCSLYSK 217

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAEL-LAG 134
               E A + F  +  ++ ISW ++I+ +  NG     L+ F EM L   V   E  L  
Sbjct: 218 CGSLECAVKAFRRIRDKNVISWTTVISAWGDNGEAATGLQFFVEM-LSECVEPNEFTLTS 276

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
            +SLC  +  L++G QIH+L I  G FE ++ +  +++ LY KC     A ++F++M   
Sbjct: 277 ALSLCCVMQSLDIGTQIHSLTIKLG-FESNLPIKNSIMYLYLKCGWIHEAKKLFDEMETI 335

Query: 195 NEVSWTAMISG---CIDSQNYD--------TGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
           + V+W AMI+G    +D    D          + +F  + R G+KP   T + VL  C+ 
Sbjct: 336 SLVTWNAMIAGHARMMDFAKDDLAAHQCGTEALSIFLKLNRSGMKPDLFTFSSVLSVCSS 395

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
           L  L  G+ +H      GF  D  +  AL++MY +C  ++  A   F    ++ ++ W+S
Sbjct: 396 LVALEQGEQVHAQTIKTGFLSDVVVGTALVNMYNKCG-SIERASKAFVEMSIRTLISWTS 454

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           +I GY+Q+G   +A+ LF  MRL  + PN +T + +LS+C+    +   L  +  +MK  
Sbjct: 455 MITGYAQNGQPQQALLLFEDMRLAGVRPNKITFVGVLSACSHAGMVDEALD-YFQMMKNE 513

Query: 364 LNFDVSIGN--ALMNMYSKCGSITSSHQIFNEM--AARDFVSWTTLISGYGFHGYGEEAL 419
                 + +   L++M+ + G +  +     EM     +F+ W+ LI+G    G  E  L
Sbjct: 514 YKITPVMDHYACLIDMFVRLGRLDEAFDFIKEMDLEPNEFI-WSILIAGCRSQGKLE--L 570

Query: 420 QLFLEMQESGVEP-DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIA 467
             +   Q   ++P D  T   +L+    AG  KE   +   +MKE+K+ 
Sbjct: 571 GFYAAEQLLNLKPKDTETYNLLLNMYLSAGKWKEVSRV-RKMMKEEKLG 618



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 114/221 (51%), Gaps = 1/221 (0%)

Query: 224 REGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEAL 283
           REG K        +L  C + + + + + IH +    G   D  L   L+++Y +C   +
Sbjct: 62  REGTKVESAFYVPILQECIDKKLVSDAQKIHAHIVKTGAHKDAFLMTFLVNVYAKCG-TM 120

Query: 284 HPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC 343
             AR +F+    ++VV W++++ GY        A+++F  M      P + TL   LS+ 
Sbjct: 121 ETARKVFDELPRRNVVSWTTLMTGYVHDSKPELAVQVFREMLEAGAYPTNYTLGTALSAS 180

Query: 344 TRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWT 403
           +       G  +H Y +K  + FD SIGN+L ++YSKCGS+  + + F  +  ++ +SWT
Sbjct: 181 SDLHSKELGKQIHGYSIKYRIEFDASIGNSLCSLYSKCGSLECAVKAFRRIRDKNVISWT 240

Query: 404 TLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
           T+IS +G +G     LQ F+EM    VEP+  T+ + LS C
Sbjct: 241 TVISAWGDNGEAATGLQFFVEMLSECVEPNEFTLTSALSLC 281



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 72/131 (54%), Gaps = 4/131 (3%)

Query: 313 DLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN 372
           D  EA+        E  +  S   + IL  C  +  +S    +H +I+K G + D  +  
Sbjct: 53  DFREALSFIR----EGTKVESAFYVPILQECIDKKLVSDAQKIHAHIVKTGAHKDAFLMT 108

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
            L+N+Y+KCG++ ++ ++F+E+  R+ VSWTTL++GY      E A+Q+F EM E+G  P
Sbjct: 109 FLVNVYAKCGTMETARKVFDELPRRNVVSWTTLMTGYVHDSKPELAVQVFREMLEAGAYP 168

Query: 433 DAITVLAILSA 443
              T+   LSA
Sbjct: 169 TNYTLGTALSA 179


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  304 bits (778), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 188/565 (33%), Positives = 292/565 (51%), Gaps = 5/565 (0%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSG-SDADPVISNSLISMYA 74
           +E+   G   N     S I+AC  +   +  G Q+H  A+++G +DA   + N LI+MYA
Sbjct: 90  KEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYA 149

Query: 75  KFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAG 134
           K    + A  +F  M  +D++SWNS+I    QN  +  +++ +  M   G +     L  
Sbjct: 150 KCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALIS 209

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
            +S C+ +G + LG+Q H   I  G  ++ V VS  LL LY++        +VF  M+ R
Sbjct: 210 ALSSCASLGCILLGQQTHGEGIKLG-LDMDVSVSNTLLALYAETSRLAECQKVFSWMLER 268

Query: 195 NEVSWTAMISGCIDS-QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAI 253
           ++VSW  +I    DS  +    I++F  M R G  P RVT   +L   + L   +    I
Sbjct: 269 DQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQI 328

Query: 254 HGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGD 313
           H          D+ +  AL+  Y +  E  +   I    ++ +D V W+S+I GY  +  
Sbjct: 329 HALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNEL 388

Query: 314 LSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNA 373
           L +AM L   M       +  T   +LS+C   + L  G+ VH   ++A L  DV IG+A
Sbjct: 389 LCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECGMEVHACAIRACLESDVVIGSA 448

Query: 374 LMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPD 433
           L++MYSKCG I  + + FN M  R+  SW ++ISGY  HG+G+ AL+LF  M+ SG  PD
Sbjct: 449 LVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYARHGHGDNALRLFTRMKLSGQLPD 508

Query: 434 AITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVV 493
            IT + +LSAC+H GLV E    F ++ +   +   +EHY+C VDLLG++G+++     +
Sbjct: 509 HITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLLGRAGELDKIENFI 568

Query: 494 STMPMKPSTRILSSLVSA-CRIHGR-LEVAEMLAHQLIEAEPENAANYTLLSMVCSESGN 551
           + MP+KP+  I  +++ A CR +GR  E+    A  L   +P+NA NY LLS + +  G 
Sbjct: 569 NKMPIKPNILIWRTVLGACCRGNGRKTELGRRAAEMLFNMDPQNAVNYVLLSNMYASGGK 628

Query: 552 WLGAEEVWRVMRAKGLSKSYGFSRI 576
           W       R MR   + K  G S +
Sbjct: 629 WEDMARTRRAMREAAVKKEAGCSWV 653



 Score =  205 bits (521), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 142/475 (29%), Positives = 237/475 (49%), Gaps = 16/475 (3%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
            H   LK G D+D  + N+LI++Y +     SA +LFDEMP R+ ++W  +I+ +TQNG 
Sbjct: 22  FHLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGM 81

Query: 110 YVRSLEMFREMYLCGFVLKAELLAGIISLCSQ-IGELELGRQIHALVIVDGSFELSVFVS 168
              +  + +EM   GF+         I  C + +     GRQ+H   I  G  +  V V 
Sbjct: 82  PEDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVG 141

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
             L+++Y+KC     A  VF  MV ++ VSW +MI+G   ++ ++  +  + +M++ G+ 
Sbjct: 142 NGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLM 201

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
           P+   L   L +CA L  +  G+  HG     G D D  +S  L+ +Y E T  L   + 
Sbjct: 202 PSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAE-TSRLAECQK 260

Query: 289 IFERTKVKDVVIWSSIIRGYSQSG-DLSEAMKLFSRMRLERIEPNSVTLLAILSSCT--R 345
           +F     +D V W+++I   + SG  +SEA+++F  M      PN VT + +L++ +   
Sbjct: 261 VFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLS 320

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA-RDFVSWTT 404
            S LSH   +H  I+K  +  D +I NAL+  Y K G + +  +IF+ M+  RD VSW +
Sbjct: 321 TSKLSH--QIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNS 378

Query: 405 LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVK---EAETLFNNVM 461
           +ISGY  +    +A+ L   M + G   D  T   +LSAC     ++   E         
Sbjct: 379 MISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECGMEVHACAIRAC 438

Query: 462 KEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG 516
            E  + +     +  VD+  K G+I+ A +  + MP++ +    +S++S    HG
Sbjct: 439 LESDVVIG----SALVDMYSKCGRIDYASRFFNLMPVR-NLYSWNSMISGYARHG 488



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 109/371 (29%), Positives = 188/371 (50%), Gaps = 12/371 (3%)

Query: 154 LVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYD 213
           L ++   F+  +F+   L+++Y +    + A ++F++M  RN V+W  +ISG   +   +
Sbjct: 24  LNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMPE 83

Query: 214 TGIDLFRAMQREGVKPTRVTLTIVLLACAE-LRDLRNGKAIHGYAYCCGF-DFDHHLSAA 271
               + + M  EG  P R      + AC E +   R G+ +HGYA   G  D    +   
Sbjct: 84  DACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGNG 143

Query: 272 LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP 331
           L++MY +C +  H AR +F     KD V W+S+I G  Q+    +A+K ++ MR   + P
Sbjct: 144 LINMYAKCGDIDH-ARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMP 202

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIF 391
           ++  L++ LSSC     +  G   H   +K GL+ DVS+ N L+ +Y++   +    ++F
Sbjct: 203 SNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVF 262

Query: 392 NEMAARDFVSWTTLISGYGFHGYG-EEALQLFLEMQESGVEPDAITVLAILSACNHAGLV 450
           + M  RD VSW T+I      G    EA+++FLEM  +G  P+ +T + +L+  +     
Sbjct: 263 SWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTS 322

Query: 451 KEAETLFNNVMKEK-KIALAIEH--YACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSS 507
           K +  +   ++K   K   AIE+   ACY    GKSG++E+  ++ S M  +      +S
Sbjct: 323 KLSHQIHALILKYNVKDDNAIENALLACY----GKSGEMENCEEIFSRMSERRDEVSWNS 378

Query: 508 LVSACRIHGRL 518
           ++S   IH  L
Sbjct: 379 MISG-YIHNEL 388


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 154/492 (31%), Positives = 276/492 (56%), Gaps = 1/492 (0%)

Query: 89  MPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELG 148
           MP R+ +SW ++I+  +QN  +  ++  F  M +CG V      +  I  C+ +G +E+G
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 149 RQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCID 208
           +Q+H L +  G     +FV + L D+YSKC     A +VFE+M  ++EVSWTAMI G   
Sbjct: 61  KQMHCLALKFG-IGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSK 119

Query: 209 SQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHL 268
              ++  +  F+ M  E V   +  L   L AC  L+  + G+++H      GF+ D  +
Sbjct: 120 IGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFV 179

Query: 269 SAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER 328
             AL  MY +  +    + +    ++ ++VV ++ +I GY ++  + + + +F  +R + 
Sbjct: 180 GNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQG 239

Query: 329 IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSH 388
           IEPN  T  +++ +C  Q+ L  G  +H  +MK   + D  + + L++MY KCG +  + 
Sbjct: 240 IEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAI 299

Query: 389 QIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG 448
           Q F+E+     ++W +L+S +G HG G++A+++F  M + GV+P+AIT +++L+ C+HAG
Sbjct: 300 QAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAG 359

Query: 449 LVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSL 508
           LV+E    F ++ K   +    EHY+C +DLLG++G++++A + ++ MP +P+     S 
Sbjct: 360 LVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSF 419

Query: 509 VSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLS 568
           + ACRIHG  E+ ++ A +L++ EP+N+    LLS + +    W     V   MR   + 
Sbjct: 420 LGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVK 479

Query: 569 KSYGFSRIENEY 580
           K  G+S ++  Y
Sbjct: 480 KLPGYSWVDVGY 491



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 106/391 (27%), Positives = 195/391 (49%), Gaps = 12/391 (3%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPY 91
           S I+ACA   + +  G Q+HC ALK G  ++  + ++L  MY+K      A ++F+EMP 
Sbjct: 46  SAIRACASLGSIE-MGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPC 104

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQI 151
           +D +SW ++I+ +++ G +  +L  F++M      +   +L   +  C  +   + GR +
Sbjct: 105 KDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSV 164

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE-QMVIRNEVSWTAMISGCIDSQ 210
           H+ V+  G FE  +FV  AL D+YSK      A  VF      RN VS+T +I G ++++
Sbjct: 165 HSSVVKLG-FESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETE 223

Query: 211 NYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSA 270
             + G+ +F  ++R+G++P   T + ++ ACA    L  G  +H       FD D  +S+
Sbjct: 224 QIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSS 283

Query: 271 ALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE 330
            L+ MY +C   L  A   F+       + W+S++  + Q G   +A+K+F RM    ++
Sbjct: 284 ILVDMYGKCG-LLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVK 342

Query: 331 PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG----NALMNMYSKCGSITS 386
           PN++T +++L+ C+    +  GL    Y       + V  G    + ++++  + G +  
Sbjct: 343 PNAITFISLLTGCSHAGLVEEGLD---YFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKE 399

Query: 387 SHQIFNEMA-ARDFVSWTTLISGYGFHGYGE 416
           + +  N M    +   W + +     HG  E
Sbjct: 400 AKEFINRMPFEPNAFGWCSFLGACRIHGDKE 430



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 66/132 (50%), Gaps = 1/132 (0%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           EL   G+  N     S+IKACA  Q     G QLH   +K   D DP +S+ L+ MY K 
Sbjct: 234 ELRRQGIEPNEFTFSSLIKACA-NQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKC 292

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
              E A Q FDE+     I+WNS+++ F Q+G    ++++F  M   G    A     ++
Sbjct: 293 GLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLL 352

Query: 137 SLCSQIGELELG 148
           + CS  G +E G
Sbjct: 353 TGCSHAGLVEEG 364


>gi|357114151|ref|XP_003558864.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic-like [Brachypodium distachyon]
          Length = 782

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 183/573 (31%), Positives = 305/573 (53%), Gaps = 8/573 (1%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS- 66
           E  L  Y+  L  +G   +    P V+K CA     +  G   H  A++ G     V + 
Sbjct: 89  EAALAAYRAML-AAGARPDRFTFPVVVKCCARLGALEE-GRAAHSAAIRLGLVGSEVYTG 146

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           NSL++ YAK      A ++FD MP RD ++WNS+++ +  NG    +L+ FREM+  G  
Sbjct: 147 NSLLAFYAKLGMVADAERVFDGMPVRDIVTWNSMVDGYVSNGLGALALDCFREMHE-GLQ 205

Query: 127 LKAELLAGIISL--CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
           ++ + +  I +L  C     L  GR++HA VI  G  E  V V T+LLD+Y KC     A
Sbjct: 206 VQHDGVGIIAALAACCLDSALMQGREVHAYVIRHG-LEQDVKVGTSLLDMYCKCGAIASA 264

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
             +F  M  R  V+W  MI G   +   +   D F  M+ EG +   VT   +L ACA+ 
Sbjct: 265 EGMFATMPSRTVVTWNCMIGGYALNGCPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQT 324

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
                G+++HGY     F     L  AL+ MY +  + +  +  IF +   K +V W+++
Sbjct: 325 ESSLYGRSVHGYVTRSQFLPHVVLETALLEMYSKVGK-VKSSETIFGQMTNKTLVSWNNM 383

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
           I  Y      +EA+ LF  +  + + P+  T+ A++ +      L     +H YI++   
Sbjct: 384 IAAYMYKEMYNEAITLFLELLNQPLYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIVRLDY 443

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
             +  + NA+M+MY++CG + SS +IF++MA +D +SW T+I GY  HG G+ AL++F E
Sbjct: 444 GENTLVTNAVMHMYARCGDVVSSRKIFDKMAGKDVISWNTIIMGYAIHGQGKIALEMFSE 503

Query: 425 MQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSG 484
           M+ +G++P+  T +++L+AC+ +G+  E    FN + ++  I   IEHY C  DLLG++G
Sbjct: 504 MKSNGLQPNESTFVSVLTACSVSGMADEGWIQFNLMQRDYGIIPQIEHYGCMTDLLGRAG 563

Query: 485 KIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSM 544
            + +  K + ++P+ P+ RI  SL++A R    +++AE  A ++ E E +N   Y +LS 
Sbjct: 564 DLREVLKFIESIPITPTFRIWGSLLTASRNRNDIDIAEYAAERIFELEHDNTGCYVILSS 623

Query: 545 VCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           + +++G W   + +   M  KGL ++   S +E
Sbjct: 624 MYADAGRWEDVQRIRSSMMEKGLRRTDARSIVE 656



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 140/270 (51%), Gaps = 8/270 (2%)

Query: 177 KCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTI 236
           + H  L A+R      + N V     I G  D+   +  +  +RAM   G +P R T  +
Sbjct: 58  RMHDALAAVRSSPDAFLHNVV-----IRGFADAGLPEAALAAYRAMLAAGARPDRFTFPV 112

Query: 237 VLLACAELRDLRNGKAIHGYAYCCGF-DFDHHLSAALMHMYCECTEALHPARIIFERTKV 295
           V+  CA L  L  G+A H  A   G    + +   +L+  Y +        R +F+   V
Sbjct: 113 VVKCCARLGALEEGRAAHSAAIRLGLVGSEVYTGNSLLAFYAKLGMVADAER-VFDGMPV 171

Query: 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE-RIEPNSVTLLAILSSCTRQSFLSHGLG 354
           +D+V W+S++ GY  +G  + A+  F  M    +++ + V ++A L++C   S L  G  
Sbjct: 172 RDIVTWNSMVDGYVSNGLGALALDCFREMHEGLQVQHDGVGIIAALAACCLDSALMQGRE 231

Query: 355 VHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGY 414
           VH Y+++ GL  DV +G +L++MY KCG+I S+  +F  M +R  V+W  +I GY  +G 
Sbjct: 232 VHAYVIRHGLEQDVKVGTSLLDMYCKCGAIASAEGMFATMPSRTVVTWNCMIGGYALNGC 291

Query: 415 GEEALQLFLEMQESGVEPDAITVLAILSAC 444
            EEA   F++M+  G + + +T + +L+AC
Sbjct: 292 PEEAFDCFVQMKAEGHQVEVVTAINLLAAC 321


>gi|297738048|emb|CBI27249.3| unnamed protein product [Vitis vinifera]
          Length = 707

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 174/588 (29%), Positives = 303/588 (51%), Gaps = 61/588 (10%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           ++H   +  G   D +    L+S+Y  F   E A  +FD +   D  SW  +I  +  N 
Sbjct: 104 KIHALLVVHGLSEDLLCETKLVSLYGSFGHVECARLMFDRIRNPDLYSWKVMIRWYFLND 163

Query: 109 FYVRSLEMFR-EMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFV 167
            Y   ++ +   +  C       + + ++  CS++ E + GR++H  ++  GS +   FV
Sbjct: 164 SYSEIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRETDEGRKLHCQIVKVGSPD--SFV 221

Query: 168 STALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV 227
            T L+D+Y+KC     + RVF++++ RN V WT+MI G + +     G+ LF  M+   V
Sbjct: 222 LTGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLV 281

Query: 228 KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPAR 287
           +  + TL  ++ AC +L  L  GK +HGY    GFD +  L   L+ +Y +C + +  A 
Sbjct: 282 EGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGD-IRDAF 340

Query: 288 IIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQS 347
            +F+     D+V W+++I GY+Q G   EA+KLF+  R + + PN+VT  ++LS+C +  
Sbjct: 341 SVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTG 400

Query: 348 FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLIS 407
            L+ G  VHC  +K G + D +  NAL++MY+KC  I  +  +F  +  +D ++W ++IS
Sbjct: 401 SLNMGRSVHCLGIKLG-SEDATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIIS 459

Query: 408 GYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAET------------ 455
           GY  +GY  EAL+LF +M+   V PDAIT++++LSAC   G  +   +            
Sbjct: 460 GYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAGLLS 519

Query: 456 ---------LFNNVMKEK-----------------------------------KIALAIE 471
                    LF +++KEK                                       +++
Sbjct: 520 GRDCSRSLELFGDMLKEKLEPNEVIFTTILSACSHSGMLGEGWRYFNTMCQVYNFVPSMK 579

Query: 472 HYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA 531
           HYAC VDLL ++G++E+A   +  +P++P   +L + +  CR+H R ++ E+   +++E 
Sbjct: 580 HYACMVDLLARAGRLEEALDFIEKIPIQPDVSLLGAFLHGCRLHSRFDLGEVAVRRMLEL 639

Query: 532 EPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIENE 579
            P+ A  Y L+S + +  G W  A +V  +M+ +GL+K  G+S ++ E
Sbjct: 640 HPDKACYYVLMSNLYASEGRWSQANQVMELMKQRGLAKLPGWSLVDIE 687



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 101/315 (32%), Positives = 170/315 (53%), Gaps = 7/315 (2%)

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           ++ +C  +  L   R+IHAL++V G  E  +   T L+ LY    H   A  +F+++   
Sbjct: 92  LLGICKTVSSL---RKIHALLVVHGLSE-DLLCETKLVSLYGSFGHVECARLMFDRIRNP 147

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKP-TRVTLTIVLLACAELRDLRNGKAI 253
           +  SW  MI     + +Y   +  +    R+ +     V  +IVL AC+ELR+   G+ +
Sbjct: 148 DLYSWKVMIRWYFLNDSYSEIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRETDEGRKL 207

Query: 254 HGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGD 313
           H      G   D  +   L+ MY +C E +  +R +F+    ++VV W+S+I GY Q+  
Sbjct: 208 HCQIVKVGSP-DSFVLTGLVDMYAKCRE-VEDSRRVFDEILDRNVVCWTSMIVGYVQNDC 265

Query: 314 LSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNA 373
           L E + LF+RMR   +E N  TL +++++CT+   L  G  VH Y++K+G + +  +   
Sbjct: 266 LKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTP 325

Query: 374 LMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPD 433
           L+++Y KCG I  +  +F+E++  D VSWT +I GY   GY  EAL+LF + +   + P+
Sbjct: 326 LLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPN 385

Query: 434 AITVLAILSACNHAG 448
            +T  ++LSAC   G
Sbjct: 386 TVTTSSVLSACAQTG 400



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 115/415 (27%), Positives = 187/415 (45%), Gaps = 33/415 (7%)

Query: 26  NTAILPSVIKACA-YAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQ 84
           N   L S++ AC      HQ  G  +H   +KSG D +  +   L+ +Y K      A+ 
Sbjct: 284 NQYTLGSLVTACTKLGALHQ--GKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFS 341

Query: 85  LFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGE 144
           +FDE+   D +SW ++I  + Q G+   +L++F +      +      + ++S C+Q G 
Sbjct: 342 VFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGS 401

Query: 145 LELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMIS 204
           L +GR +H L I  GS E + F   AL+D+Y+KCH    A  VFE +  ++ ++W ++IS
Sbjct: 402 LNMGRSVHCLGIKLGS-EDATF-ENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIIS 459

Query: 205 GCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDF 264
           G   +      ++LF  M+ + V P  +TL  VL ACA +   R G ++HGYA   G   
Sbjct: 460 GYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAGLLS 519

Query: 265 DHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM 324
               S +L        E L P  +IF           ++I+   S SG L E  + F+ M
Sbjct: 520 GRDCSRSLELFGDMLKEKLEPNEVIF-----------TTILSACSHSGMLGEGWRYFNTM 568

Query: 325 -RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS 383
            ++    P+      ++    R   L   L    +I K  +  DVS+  A ++     G 
Sbjct: 569 CQVYNFVPSMKHYACMVDLLARAGRLEEALD---FIEKIPIQPDVSLLGAFLH-----GC 620

Query: 384 ITSSHQIFNEMAAR-------DFVSWTTLISG-YGFHGYGEEALQLFLEMQESGV 430
              S     E+A R       D   +  L+S  Y   G   +A Q+   M++ G+
Sbjct: 621 RLHSRFDLGEVAVRRMLELHPDKACYYVLMSNLYASEGRWSQANQVMELMKQRGL 675


>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Vitis vinifera]
          Length = 590

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 172/512 (33%), Positives = 279/512 (54%), Gaps = 37/512 (7%)

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           N+LI+ YA    P++A+ ++  +                 NGF         +MY    V
Sbjct: 74  NTLIAAYASSCTPKAAFLVYGRI---------------VGNGF-------VPDMYTFPVV 111

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
           LKA         C++   ++ G Q+H + +  G F   ++V  +LL  YS C  W  A R
Sbjct: 112 LKA---------CTKFLGVQEGEQVHGVAVKMG-FLCDLYVQNSLLHFYSVCGKWGGAGR 161

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VF++M++R+ VSWT +ISG + +  +D  I+LF  M    V P   T   VL+AC  +  
Sbjct: 162 VFDEMLVRDVVSWTGLISGYVRTGLFDEAINLFLKMD---VVPNVATFVSVLVACGRMGY 218

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L  GK +HG  Y   F     +  AL+ MY +C E L  AR +F+    +D+V W+SII 
Sbjct: 219 LSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKC-ECLCEARKLFDELPDRDIVSWTSIIS 277

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           G  Q     ++++LF  M++  +EP+ + L ++LS+C     L +G  V  YI + G+ +
Sbjct: 278 GLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACASLGALDYGRWVQEYIERQGIEW 337

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           D+ IG AL++MY+KCG I  +  IFN +  R+  +W  L+ G   HG+G EAL+ F  M 
Sbjct: 338 DIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMI 397

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK-KIALAIEHYACYVDLLGKSGK 485
            +G+ P+ +T LAIL+AC H+GLV E  + F  ++ +    +  +EHY C +DLL ++G 
Sbjct: 398 GAGIRPNEVTFLAILTACCHSGLVAEGRSYFYQMISQPFNFSPRLEHYGCMIDLLCRAGL 457

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV 545
           +++A K +  MP+ P   I  +L+SAC+ +G +E+++ +   L+E + +++  Y LLS +
Sbjct: 458 LDEAYKFIRNMPLPPDVLIWGALLSACKANGNVELSQEILSHLLELKSQDSGVYVLLSNI 517

Query: 546 CSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            + +  W     V R+M+ KG+ K  G S IE
Sbjct: 518 YATNERWDDVTRVRRLMKDKGIRKFPGSSVIE 549



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 128/421 (30%), Positives = 213/421 (50%), Gaps = 20/421 (4%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           +G   +    P V+KAC      Q  G Q+H  A+K G   D  + NSL+  Y+   K  
Sbjct: 99  NGFVPDMYTFPVVLKACTKFLGVQE-GEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWG 157

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
            A ++FDEM  RD +SW  +I+ + + G +  ++ +F +M +   V        ++  C 
Sbjct: 158 GAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAINLFLKMDV---VPNVATFVSVLVACG 214

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
           ++G L +G+ +H LV    +F + + V  AL+D+Y KC     A ++F+++  R+ VSWT
Sbjct: 215 RMGYLSMGKGVHGLV-YKRAFGIGLVVGNALVDMYVKCECLCEARKLFDELPDRDIVSWT 273

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
           ++ISG +  +     ++LF  MQ  GV+P R+ LT VL ACA L  L  G+ +  Y    
Sbjct: 274 SIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACASLGALDYGRWVQEYIERQ 333

Query: 261 GFDFDHHLSAALMHMY--CECTE-ALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
           G ++D H+  AL+ MY  C C E ALH    IF     +++  W++++ G +  G   EA
Sbjct: 334 GIEWDIHIGTALVDMYAKCGCIEMALH----IFNGIPNRNIFTWNALLGGLAMHGHGHEA 389

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN--ALM 375
           +K F  M    I PN VT LAIL++C     ++ G      ++    NF   + +   ++
Sbjct: 390 LKHFELMIGAGIRPNEVTFLAILTACCHSGLVAEGRSYFYQMISQPFNFSPRLEHYGCMI 449

Query: 376 NMYSKCGSITSSHQIFNEMA-ARDFVSWTTLISGYGFHG---YGEEALQLFLEM--QESG 429
           ++  + G +  +++    M    D + W  L+S    +G     +E L   LE+  Q+SG
Sbjct: 450 DLLCRAGLLDEAYKFIRNMPLPPDVLIWGALLSACKANGNVELSQEILSHLLELKSQDSG 509

Query: 430 V 430
           V
Sbjct: 510 V 510



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 154/339 (45%), Gaps = 10/339 (2%)

Query: 2   VSKHFYEQTLHLY-KQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           V    +++ ++L+ K ++ P     N A   SV+ AC     +   G  +H    K    
Sbjct: 182 VRTGLFDEAINLFLKMDVVP-----NVATFVSVLVACG-RMGYLSMGKGVHGLVYKRAFG 235

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
              V+ N+L+ MY K      A +LFDE+P RD +SW SII+   Q      SLE+F +M
Sbjct: 236 IGLVVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDM 295

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
            + G      +L  ++S C+ +G L+ GR +   +   G  E  + + TAL+D+Y+KC  
Sbjct: 296 QISGVEPDRIILTSVLSACASLGALDYGRWVQEYIERQG-IEWDIHIGTALVDMYAKCGC 354

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
             +AL +F  +  RN  +W A++ G     +    +  F  M   G++P  VT   +L A
Sbjct: 355 IEMALHIFNGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTA 414

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLS--AALMHMYCECTEALHPARIIFERTKVKDV 298
           C     +  G++         F+F   L     ++ + C         + I       DV
Sbjct: 415 CCHSGLVAEGRSYFYQMISQPFNFSPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPLPPDV 474

Query: 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLL 337
           +IW +++     +G++  + ++ S +   + + + V +L
Sbjct: 475 LIWGALLSACKANGNVELSQEILSHLLELKSQDSGVYVL 513


>gi|356551789|ref|XP_003544256.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 758

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 175/534 (32%), Positives = 295/534 (55%), Gaps = 29/534 (5%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           +H   +K+G   +  + + L+++YAK    E A ++FD M  R+ ++W +++  F QN  
Sbjct: 89  VHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFDNMLRRNVVAWTTLMVGFVQNSQ 148

Query: 110 YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVI---VDGSFELSVF 166
              ++ +F+EM   G       L+ ++  CS +  L+LG Q HA +I   VD  F+ SV 
Sbjct: 149 PKHAIHVFQEMLYAGSYPSVYTLSAVLHACSSLQSLKLGDQFHAYIIKYHVD--FDASV- 205

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
             +AL  LYSKC     AL+ F ++  +N +SWT+ +S C D+     G+ LF  M    
Sbjct: 206 -GSALCSLYSKCGRLEDALKTFSRIREKNVISWTSAVSACADNGAPVKGLRLFVEMIAVD 264

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSA--ALMHMYCECTEALH 284
           +KP   TLT  L  C E+  L  G  +  Y+ C  F ++ +L    +L+++Y + +  + 
Sbjct: 265 IKPNEFTLTSALSQCCEILSLELGTQV--YSLCIKFGYESNLRVRNSLLYLYLK-SGCIV 321

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDL-----------SEAMKLFSRMRLERIEPNS 333
            A  +F R     +V W+++I G++Q  +L           SEA+KLFS++ L  ++P+ 
Sbjct: 322 EAHRLFNRMDDASMVTWNAMIAGHAQMMELTKDNLSACHRGSEALKLFSKLNLSGMKPDL 381

Query: 334 VTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNE 393
            TL ++LS C+R   +  G  +H   +K G   DV +  +L++MYSKCGSI  + + F E
Sbjct: 382 FTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYSKCGSIERASKAFLE 441

Query: 394 MAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEA 453
           M+ R  ++WT++I+G+  HG  ++AL +F +M  +GV P+A+T + +LSAC+HAG+V +A
Sbjct: 442 MSTRTMIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRPNAVTFVGVLSACSHAGMVSQA 501

Query: 454 ETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACR 513
              F  + K+ KI  A++HY C VD+  + G++E A   +  M  +PS  I S+ ++ C+
Sbjct: 502 LNYFEIMQKKYKIKPAMDHYECMVDMFVRLGRLEQALNFIKKMNYEPSEFIWSNFIAGCK 561

Query: 514 IHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567
            HG LE+    A QL+  +P++   Y LL  +      +L AE    V R + +
Sbjct: 562 SHGNLELGFYAAEQLLSLKPKDPETYVLLLNM------YLSAERFEDVSRVRKM 609


>gi|225454898|ref|XP_002276015.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Vitis vinifera]
          Length = 744

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 175/530 (33%), Positives = 291/530 (54%), Gaps = 42/530 (7%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G  LH   +K+G D   V+ + L+SMY+K   PE A++ F E+  +D ISW S+I+ +++
Sbjct: 257 GRCLHGLVVKTGMDYSQVVQSLLLSMYSKCGNPEEAHRSFCEVLNKDIISWTSMISAYSR 316

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
            G+    ++MF EM + G      +++ ++S  S    +   +  H L+I    + L   
Sbjct: 317 MGWATECIDMFWEMLVSGIYPDGIVISCMLSSFSNSMRVFEAKAFHGLIIRR-HYTLDQM 375

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           V  ALL +Y K     +A + F ++  +N  +W  M+SG                     
Sbjct: 376 VQNALLSMYCKFGFLKLAEKFFGRVNEQNFEAWNLMVSG--------------------- 414

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
              T +                  ++IH Y      D +  ++ +L+ MY + +  L  A
Sbjct: 415 YGATHLA-----------------RSIHCYMIKNLMDENVSVNNSLIDMYGK-SGNLTIA 456

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
           R IF R   +D+V W+++I  Y+  G  +EA+ L+ +M LE ++PNS TL+++LS+C+  
Sbjct: 457 RRIFCRIP-RDIVTWNTLISSYAHCGHFAEALSLYDKMVLEDLKPNSATLVSVLSACSHL 515

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
           + L  G  VH YI      F++SI  AL++MY+KCG +  S +IFN M  RD ++W  +I
Sbjct: 516 ASLEEGEKVHNYINGGKFEFNLSIATALIDMYAKCGQLEKSREIFNSMHERDVITWNVMI 575

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
           SGYG HG    A++ F +M+ES  +P+ +T LA+LSAC HAGLVKE + LF   M++  +
Sbjct: 576 SGYGMHGDARSAIEFFQQMEESSAKPNGLTFLAVLSACAHAGLVKEGKYLFGK-MQDYSV 634

Query: 467 ALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAH 526
           A  ++HYAC VDLLG+SG +++A  +V +MP+ P   +  +L+S+C+IH  +E+   +A 
Sbjct: 635 APNLKHYACMVDLLGRSGNLQEAEALVLSMPISPDGGVWGALLSSCKIHNEIEMGIRIAK 694

Query: 527 QLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
             I+++ EN   Y ++S + S  G W  AE+   +M+ +G+ K  G+S +
Sbjct: 695 HAIDSDVENDGYYVMISNMYSSIGKWEEAEKARGIMKERGVRKKTGWSAV 744



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 132/481 (27%), Positives = 231/481 (48%), Gaps = 16/481 (3%)

Query: 48  LQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQN 107
           LQ H   + SG   +  I++ LIS+YA F KP  + +LFDE+P+RD   WNSII     N
Sbjct: 52  LQSHAFIITSGYSNNIFIASKLISLYASFHKPSCSTELFDEIPHRDAFLWNSIIKAHFSN 111

Query: 108 GFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFV 167
           G Y R+L+ ++ M     +     +  I++ C+++  +  GR IH LV   G F  S  V
Sbjct: 112 GEYSRALDFYQWMRASEALPNHFTIPMIVASCAELELVNYGRSIHGLVSKLGLFSGSSAV 171

Query: 168 STALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR--- 224
            ++ + +YSKC     A  VF++++ R+ V+WTA++ GC+ +     G++    M R   
Sbjct: 172 GSSFVYMYSKCGVLEEAYGVFDEILFRDVVAWTALVIGCVQNGESKMGLECLCEMHRIGG 231

Query: 225 EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
           +G +P   TL     AC  L  L  G+ +HG     G D+   + + L+ MY +C     
Sbjct: 232 DGERPNFRTLEGGFQACGNLGALLEGRCLHGLVVKTGMDYSQVVQSLLLSMYSKCGNPEE 291

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
             R   E    KD++ W+S+I  YS+ G  +E + +F  M +  I P+ + +  +LSS +
Sbjct: 292 AHRSFCEVLN-KDIISWTSMISAYSRMGWATECIDMFWEMLVSGIYPDGIVISCMLSSFS 350

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
               +      H  I++     D  + NAL++MY K G +  + + F  +  ++F +W  
Sbjct: 351 NSMRVFEAKAFHGLIIRRHYTLDQMVQNALLSMYCKFGFLKLAEKFFGRVNEQNFEAWNL 410

Query: 405 LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK 464
           ++SGY   G    A  +   M ++ ++ +     +++     +G +  A  +F  + ++ 
Sbjct: 411 MVSGY---GATHLARSIHCYMIKNLMDENVSVNNSLIDMYGKSGNLTIARRIFCRIPRD- 466

Query: 465 KIALAIEHYACYVDLLGKSGKIEDACKVVSTM---PMKPSTRILSSLVSACRIHGRLEVA 521
                I  +   +      G   +A  +   M    +KP++  L S++SAC     LE  
Sbjct: 467 -----IVTWNTLISSYAHCGHFAEALSLYDKMVLEDLKPNSATLVSVLSACSHLASLEEG 521

Query: 522 E 522
           E
Sbjct: 522 E 522



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 173/331 (52%), Gaps = 10/331 (3%)

Query: 138 LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197
           L +QI  L+   Q HA +I  G +  ++F+++ L+ LY+  H    +  +F+++  R+  
Sbjct: 41  LSNQISSLKTLLQSHAFIITSG-YSNNIFIASKLISLYASFHKPSCSTELFDEIPHRDAF 99

Query: 198 SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
            W ++I     +  Y   +D ++ M+     P   T+ +++ +CAEL  +  G++IHG  
Sbjct: 100 LWNSIIKAHFSNGEYSRALDFYQWMRASEALPNHFTIPMIVASCAELELVNYGRSIHGLV 159

Query: 258 YCCG-FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
              G F     + ++ ++MY +C   L  A  +F+    +DVV W++++ G  Q+G+   
Sbjct: 160 SKLGLFSGSSAVGSSFVYMYSKCG-VLEEAYGVFDEILFRDVVAWTALVIGCVQNGESKM 218

Query: 317 AMKLFSRMRLERI-----EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
            ++    M   RI      PN  TL     +C     L  G  +H  ++K G+++   + 
Sbjct: 219 GLECLCEMH--RIGGDGERPNFRTLEGGFQACGNLGALLEGRCLHGLVVKTGMDYSQVVQ 276

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
           + L++MYSKCG+   +H+ F E+  +D +SWT++IS Y   G+  E + +F EM  SG+ 
Sbjct: 277 SLLLSMYSKCGNPEEAHRSFCEVLNKDIISWTSMISAYSRMGWATECIDMFWEMLVSGIY 336

Query: 432 PDAITVLAILSACNHAGLVKEAETLFNNVMK 462
           PD I +  +LS+ +++  V EA+     +++
Sbjct: 337 PDGIVISCMLSSFSNSMRVFEAKAFHGLIIR 367



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 166/367 (45%), Gaps = 47/367 (12%)

Query: 45  HFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCF 104
           H    +HC  +K+  D +  ++NSLI MY K      A ++F  +P RD ++WN++I+ +
Sbjct: 419 HLARSIHCYMIKNLMDENVSVNNSLIDMYGKSGNLTIARRIFCRIP-RDIVTWNTLISSY 477

Query: 105 TQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELS 164
              G +  +L ++ +M L      +  L  ++S CS +  LE G ++H   I  G FE +
Sbjct: 478 AHCGHFAEALSLYDKMVLEDLKPNSATLVSVLSACSHLASLEEGEKVHN-YINGGKFEFN 536

Query: 165 VFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR 224
           + ++TAL+D+Y+KC     +  +F  M  R+ ++W  MISG     +  + I+ F+ M+ 
Sbjct: 537 LSIATALIDMYAKCGQLEKSREIFNSMHERDVITWNVMISGYGMHGDARSAIEFFQQMEE 596

Query: 225 EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
              KP  +T   VL ACA    ++ GK + G         D+ ++  L H  C       
Sbjct: 597 SSAKPNGLTFLAVLSACAHAGLVKEGKYLFGKMQ------DYSVAPNLKHYAC------- 643

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
                              ++    +SG+L EA  L   M    I P+     A+LSSC 
Sbjct: 644 -------------------MVDLLGRSGNLQEAEALVLSM---PISPDGGVWGALLSSCK 681

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDV-SIGNALM--NMYSKCGSITSSHQ---IFNEMAARD 398
             + +  G+     I K  ++ DV + G  +M  NMYS  G    + +   I  E   R 
Sbjct: 682 IHNEIEMGI----RIAKHAIDSDVENDGYYVMISNMYSSIGKWEEAEKARGIMKERGVRK 737

Query: 399 FVSWTTL 405
              W+ +
Sbjct: 738 KTGWSAV 744


>gi|357481329|ref|XP_003610950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512285|gb|AES93908.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 831

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 166/534 (31%), Positives = 288/534 (53%), Gaps = 37/534 (6%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G Q+H  A+K G + D  + NSL+ MYAK    +SA  +F+ +     +SWN +I+ +  
Sbjct: 270 GKQIHTLAVKHGFERDLHLCNSLLDMYAKTGDMDSAENVFENLDKHSVVSWNIMISGYGN 329

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
                ++LE F+ M  CG+         +++ C + G++++GRQI               
Sbjct: 330 RCDSEKALECFQRMQCCGYEPDDVTYINMLTACVKSGDVKVGRQI--------------- 374

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
                                F+ M   + +SW A++SG   S ++   ++LFR MQ + 
Sbjct: 375 ---------------------FDCMSSPSLISWNAILSGYNQSADHGEAVELFRKMQFQW 413

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
             P R TL I+L +CAEL  L  GK +H  +   GF  D +++++L+++Y +C + +  +
Sbjct: 414 QNPDRTTLAIILSSCAELGLLEAGKQVHAVSQKLGFYDDVYVASSLINVYSKCGK-MEVS 472

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
           + +F +    DVV W+S+I G+S +    +A+  F RMR     P+  +   I SSC + 
Sbjct: 473 KHVFSKLSELDVVCWNSMIAGFSINSLEQDALACFKRMRQFGFFPSEFSFATIASSCAKL 532

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
           S L  G  +H  I+K G   +V +G++L+ MY KCG + ++   F+ M  ++ V+W  +I
Sbjct: 533 SSLFQGQQIHAQIIKDGYVDNVFVGSSLVEMYCKCGDVGAARYYFDMMPGKNIVTWNEMI 592

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
            GY  +GYG EA+ L+ +M  SG +PD IT +A+L+AC+H+ LV E   +F++++++ ++
Sbjct: 593 HGYAHNGYGLEAVSLYKDMISSGEKPDDITFVAVLTACSHSALVDEGVEIFSSMLQKFEV 652

Query: 467 ALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAH 526
              ++HY C +D LG+ G+  +   ++ TMP K  T +   ++S+CR+H  + +A+  A 
Sbjct: 653 VPKLDHYTCIIDCLGRVGRFNEVEVILDTMPYKDDTIVWEVVLSSCRVHANVSLAKRAAE 712

Query: 527 QLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIENEY 580
           +L    P N+A Y LL+ + S  G W  A+ V  +M    + K  G+SR E +Y
Sbjct: 713 ELHRLNPRNSAPYVLLANMYSSMGRWDDAQVVRDLMSDNQIHKDPGYSRSEFKY 766



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 133/445 (29%), Positives = 224/445 (50%), Gaps = 55/445 (12%)

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           N+++S + K +  + A +LF +MP R+T+S N+II    +NG+  ++L+ +  M +   V
Sbjct: 75  NAILSAFCKSNNLQYACRLFLQMPERNTVSLNTIITTMVKNGYERQALDTYDLMMVYESV 134

Query: 127 LKAEL-LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
             + +  A + S C  + ++  GR+ H LV+  G F+ +++VS ALL +Y+KC     A 
Sbjct: 135 KPSHITFATVFSACGGLKDVNCGRRNHGLVLKVG-FDSNIYVSNALLCMYTKCGLNEDAF 193

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE-- 243
           RVFE +V  NEV++T M+ G   +     G++LFR M R+G+    V+L+ +L+ CA+  
Sbjct: 194 RVFEGIVEPNEVTFTTMMGGLSQTNQVKEGLELFRLMLRKGICVDSVSLSTILVICAKGV 253

Query: 244 ----------LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERT 293
                     L     GK IH  A   GF+ D HL  +L+ MY + T  +  A  +FE  
Sbjct: 254 SFGVCDDSRGLSTNAQGKQIHTLAVKHGFERDLHLCNSLLDMYAK-TGDMDSAENVFENL 312

Query: 294 KVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGL 353
               VV W+ +I GY    D  +A++ F RM+    EP+ VT + +L++C          
Sbjct: 313 DKHSVVSWNIMISGYGNRCDSEKALECFQRMQCCGYEPDDVTYINMLTAC---------- 362

Query: 354 GVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHG 413
                 +K+G   DV +G                 QIF+ M++   +SW  ++SGY    
Sbjct: 363 ------VKSG---DVKVG----------------RQIFDCMSSPSLISWNAILSGYNQSA 397

Query: 414 YGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY 473
              EA++LF +MQ     PD  T+  ILS+C   GL++  + +       +K+    + Y
Sbjct: 398 DHGEAVELFRKMQFQWQNPDRTTLAIILSSCAELGLLEAGKQVH---AVSQKLGFYDDVY 454

Query: 474 --ACYVDLLGKSGKIEDACKVVSTM 496
             +  +++  K GK+E +  V S +
Sbjct: 455 VASSLINVYSKCGKMEVSKHVFSKL 479



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 124/475 (26%), Positives = 220/475 (46%), Gaps = 50/475 (10%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           MV   +  Q L  Y   +    +  +     +V  AC       + G + H   LK G D
Sbjct: 112 MVKNGYERQALDTYDLMMVYESVKPSHITFATVFSACG-GLKDVNCGRRNHGLVLKVGFD 170

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
           ++  +SN+L+ MY K    E A+++F+ +   + +++ +++   +Q       LE+FR M
Sbjct: 171 SNIYVSNALLCMYTKCGLNEDAFRVFEGIVEPNEVTFTTMMGGLSQTNQVKEGLELFRLM 230

Query: 121 YLCGFVLKAELLAGIISLCSQ------------IGELELGRQIHALVIVDGSFELSVFVS 168
              G  + +  L+ I+ +C++            +     G+QIH L +  G FE  + + 
Sbjct: 231 LRKGICVDSVSLSTILVICAKGVSFGVCDDSRGLSTNAQGKQIHTLAVKHG-FERDLHLC 289

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
            +LLD+Y+K      A  VFE +   + VSW  MISG  +  + +  ++ F+ MQ  G +
Sbjct: 290 NSLLDMYAKTGDMDSAENVFENLDKHSVVSWNIMISGYGNRCDSEKALECFQRMQCCGYE 349

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
           P  VT   +L AC +  D++ G                                    R 
Sbjct: 350 PDDVTYINMLTACVKSGDVKVG------------------------------------RQ 373

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
           IF+      ++ W++I+ GY+QS D  EA++LF +M+ +   P+  TL  ILSSC     
Sbjct: 374 IFDCMSSPSLISWNAILSGYNQSADHGEAVELFRKMQFQWQNPDRTTLAIILSSCAELGL 433

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
           L  G  VH    K G   DV + ++L+N+YSKCG +  S  +F++++  D V W ++I+G
Sbjct: 434 LEAGKQVHAVSQKLGFYDDVYVASSLINVYSKCGKMEVSKHVFSKLSELDVVCWNSMIAG 493

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKE 463
           +  +   ++AL  F  M++ G  P   +   I S+C     + + + +   ++K+
Sbjct: 494 FSINSLEQDALACFKRMRQFGFFPSEFSFATIASSCAKLSSLFQGQQIHAQIIKD 548



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/356 (29%), Positives = 174/356 (48%), Gaps = 28/356 (7%)

Query: 116 MFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLY 175
           +F + +LC  ++       + S C+QI          A  + D     ++F   A+L  +
Sbjct: 36  LFSDTFLCNHLID------LYSKCNQITS--------AHHVFDKIPHKNIFSYNAILSAF 81

Query: 176 SKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQ-REGVKPTRVTL 234
            K ++   A R+F QM  RN VS   +I+  + +      +D +  M   E VKP+ +T 
Sbjct: 82  CKSNNLQYACRLFLQMPERNTVSLNTIITTMVKNGYERQALDTYDLMMVYESVKPSHITF 141

Query: 235 TIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTK 294
             V  AC  L+D+  G+  HG     GFD + ++S AL+ MY +C       R+ FE   
Sbjct: 142 ATVFSACGGLKDVNCGRRNHGLVLKVGFDSNIYVSNALLCMYTKCGLNEDAFRV-FEGIV 200

Query: 295 VKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ-------- 346
             + V +++++ G SQ+  + E ++LF  M  + I  +SV+L  IL  C +         
Sbjct: 201 EPNEVTFTTMMGGLSQTNQVKEGLELFRLMLRKGICVDSVSLSTILVICAKGVSFGVCDD 260

Query: 347 ----SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSW 402
               S  + G  +H   +K G   D+ + N+L++MY+K G + S+  +F  +     VSW
Sbjct: 261 SRGLSTNAQGKQIHTLAVKHGFERDLHLCNSLLDMYAKTGDMDSAENVFENLDKHSVVSW 320

Query: 403 TTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFN 458
             +ISGYG     E+AL+ F  MQ  G EPD +T + +L+AC  +G VK    +F+
Sbjct: 321 NIMISGYGNRCDSEKALECFQRMQCCGYEPDDVTYINMLTACVKSGDVKVGRQIFD 376



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 79/382 (20%), Positives = 165/382 (43%), Gaps = 50/382 (13%)

Query: 232 VTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFE 291
           + L  +L +C   + L + K IH   +      D  L   L+ +Y +C + +  A  +F+
Sbjct: 6   LNLINLLQSCITNKSLSSAKIIHARIFRFTLFSDTFLCNHLIDLYSKCNQ-ITSAHHVFD 64

Query: 292 RTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR-------------------------- 325
           +   K++  +++I+  + +S +L  A +LF +M                           
Sbjct: 65  KIPHKNIFSYNAILSAFCKSNNLQYACRLFLQMPERNTVSLNTIITTMVKNGYERQALDT 124

Query: 326 ------LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
                  E ++P+ +T   + S+C     ++ G   H  ++K G + ++ + NAL+ MY+
Sbjct: 125 YDLMMVYESVKPSHITFATVFSACGGLKDVNCGRRNHGLVLKVGFDSNIYVSNALLCMYT 184

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           KCG    + ++F  +   + V++TT++ G       +E L+LF  M   G+  D++++  
Sbjct: 185 KCGLNEDAFRVFEGIVEPNEVTFTTMMGGLSQTNQVKEGLELFRLMLRKGICVDSVSLST 244

Query: 440 ILSACNHA---GLVKEAETLFNNVMKEKKIALAIEH------YAC--YVDLLGKSGKIED 488
           IL  C      G+  ++  L  N   ++   LA++H      + C   +D+  K+G ++ 
Sbjct: 245 ILVICAKGVSFGVCDDSRGLSTNAQGKQIHTLAVKHGFERDLHLCNSLLDMYAKTGDMDS 304

Query: 489 ACKVVSTMPMKPSTR---ILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV 545
           A  V   +          ++S   + C     LE  + +  Q    EP++     +L+  
Sbjct: 305 AENVFENLDKHSVVSWNIMISGYGNRCDSEKALECFQRM--QCCGYEPDDVTYINMLT-A 361

Query: 546 CSESGNWLGAEEVWRVMRAKGL 567
           C +SG+     +++  M +  L
Sbjct: 362 CVKSGDVKVGRQIFDCMSSPSL 383



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 75/152 (49%), Gaps = 9/152 (5%)

Query: 329 IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSH 388
           +E  S+ L+ +L SC     LS    +H  I +  L  D  + N L+++YSKC  ITS+H
Sbjct: 1   MEVKSLNLINLLQSCITNKSLSSAKIIHARIFRFTLFSDTFLCNHLIDLYSKCNQITSAH 60

Query: 389 QIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG 448
            +F+++  ++  S+  ++S +      + A +LFL+M E     + +++  I++     G
Sbjct: 61  HVFDKIPHKNIFSYNAILSAFCKSNNLQYACRLFLQMPER----NTVSLNTIITTMVKNG 116

Query: 449 LVKEAETLFNNVM-----KEKKIALAIEHYAC 475
             ++A   ++ +M     K   I  A    AC
Sbjct: 117 YERQALDTYDLMMVYESVKPSHITFATVFSAC 148


>gi|449461407|ref|XP_004148433.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 749

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 166/539 (30%), Positives = 304/539 (56%), Gaps = 15/539 (2%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           +H   +K+G   D  +   L+++Y+K    ESA+++FD +P R+  +W +++  + QN  
Sbjct: 80  IHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHKVFDNLPRRNVNAWTTLLTGYVQNSH 139

Query: 110 YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVST 169
            + +L++F +M   G       L  +++ CS +  +E G+Q+HA +I     +    +  
Sbjct: 140 PLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAYLI-KYHIDFDTSIGN 198

Query: 170 ALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKP 229
           +L   YSK      A++ F+ +  ++ +SWT++IS C D+      +  F  M  +G+KP
Sbjct: 199 SLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMDMLSDGMKP 258

Query: 230 TRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARII 289
              TLT VL AC  +  L  G  IH  +   G+     +  ++M++Y +C   L  A+ +
Sbjct: 259 NEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIKNSIMYLYLKCG-WLIEAQKL 317

Query: 290 FERTKVKDVVIWSSIIRGYSQSGDLSE-----------AMKLFSRMRLERIEPNSVTLLA 338
           FE  +  ++V W+++I G+++  DL+E           A+ +F ++    ++P+  T  +
Sbjct: 318 FEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLYRSGMKPDLFTFSS 377

Query: 339 ILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARD 398
           +LS C+    L  G  +H  I+K+G+  DV +G AL++MY+KCGSI  + + F EM +R 
Sbjct: 378 VLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCGSIDKASKAFLEMPSRT 437

Query: 399 FVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFN 458
            +SWT++I+G+  HG  ++ALQLF +M+  G++P+ +T + +LSAC+HAGL  EA   F 
Sbjct: 438 MISWTSMITGFARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACSHAGLADEALYYFE 497

Query: 459 NVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRL 518
            + K+  I   ++H+AC +D+  + G++E+A  VV  M  +P+  I S L++ CR HG+ 
Sbjct: 498 LMQKQYNIKPVMDHFACLIDMYLRLGRVEEAFDVVHKMNFEPNETIWSMLIAGCRSHGKS 557

Query: 519 EVAEMLAHQLIEAEPENAANY-TLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
           ++    A QL++ +P++   Y +LL+M  S +G W    +V ++M+ + + K   +S I
Sbjct: 558 DLGFYAAEQLLKLKPKDVETYVSLLNMHIS-AGRWKDVSKVRKLMKEEKVGKLKDWSWI 615



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 148/484 (30%), Positives = 238/484 (49%), Gaps = 40/484 (8%)

Query: 14  YKQELHP------------SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           Y Q  HP            +G Y +   L  V+ AC+  Q+ + FG Q+H   +K   D 
Sbjct: 134 YVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIE-FGKQVHAYLIKYHIDF 192

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D  I NSL S Y+KF + E A + F  +  +D ISW S+I+    NG   RSL  F +M 
Sbjct: 193 DTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMDML 252

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
             G       L  ++S C  +  L+LG QIH+L I  G +  S+ +  +++ LY KC  W
Sbjct: 253 SDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLG-YGSSILIKNSIMYLYLKC-GW 310

Query: 182 LI-ALRVFEQMVIRNEVSWTAMISG---CIDSQNYD--------TGIDLFRAMQREGVKP 229
           LI A ++FE M   N V+W AMI+G    +D    D        T + +F+ + R G+KP
Sbjct: 311 LIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLYRSGMKP 370

Query: 230 TRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARII 289
              T + VL  C+ L  L  G+ IHG     G   D  +  AL+ MY +C  ++  A   
Sbjct: 371 DLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCG-SIDKASKA 429

Query: 290 FERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFL 349
           F     + ++ W+S+I G+++ G   +A++LF  MRL  I+PN VT + +LS+C+     
Sbjct: 430 FLEMPSRTMISWTSMITGFARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACSHAGLA 489

Query: 350 SHGLGVHCYIMKAGLNFDVSIGN--ALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLI 406
              L  +  +M+   N    + +   L++MY + G +  +  + ++M    +   W+ LI
Sbjct: 490 DEAL-YYFELMQKQYNIKPVMDHFACLIDMYLRLGRVEEAFDVVHKMNFEPNETIWSMLI 548

Query: 407 SGYGFHG---YGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKE 463
           +G   HG    G  A +  L+++   VE    T +++L+    AG  K+   +   +MKE
Sbjct: 549 AGCRSHGKSDLGFYAAEQLLKLKPKDVE----TYVSLLNMHISAGRWKDVSKV-RKLMKE 603

Query: 464 KKIA 467
           +K+ 
Sbjct: 604 EKVG 607



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 113/208 (54%), Gaps = 1/208 (0%)

Query: 237 VLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK 296
           +L  C +       + IHG+    GF  D  +   L+++Y +C   +  A  +F+    +
Sbjct: 64  LLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCG-VMESAHKVFDNLPRR 122

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVH 356
           +V  W++++ GY Q+     A++LF +M      P++ TL  +L++C+    +  G  VH
Sbjct: 123 NVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVH 182

Query: 357 CYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGE 416
            Y++K  ++FD SIGN+L + YSK   +  + + F  +  +D +SWT++IS    +G   
Sbjct: 183 AYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAA 242

Query: 417 EALQLFLEMQESGVEPDAITVLAILSAC 444
            +L  F++M   G++P+  T+ ++LSAC
Sbjct: 243 RSLSFFMDMLSDGMKPNEYTLTSVLSAC 270



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 111/218 (50%), Gaps = 35/218 (16%)

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
           RIE  S     +L  C  ++  +    +H +I+K G + D+ +   L+N+YSKCG + S+
Sbjct: 55  RIE--SSYYFPLLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESA 112

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN-- 445
           H++F+ +  R+  +WTTL++GY  + +   ALQLF++M E+G  P   T+  +L+AC+  
Sbjct: 113 HKVFDNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSL 172

Query: 446 ---------HAGLVK---EAETLFNNVM-----KEKKIALAIEHYACY--VDLLGKSGKI 486
                    HA L+K   + +T   N +     K +++  AI+ +      D++  +  I
Sbjct: 173 QSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVI 232

Query: 487 EDAC---KVVSTMP---------MKPSTRILSSLVSAC 512
              C   +   ++          MKP+   L+S++SAC
Sbjct: 233 SSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSAC 270


>gi|15223562|ref|NP_176050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173051|sp|Q9FXA9.1|PPR83_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g56570
 gi|9954755|gb|AAG09106.1|AC009323_17 Hypothetical protein [Arabidopsis thaliana]
 gi|332195289|gb|AEE33410.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 611

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 169/521 (32%), Positives = 288/521 (55%), Gaps = 8/521 (1%)

Query: 64  VISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC 123
           +++ +LI  Y +    E A  LFDEMP RD ++W ++I  +  + +  R+ E F EM   
Sbjct: 46  ILATNLIVSYFEKGLVEEARSLFDEMPDRDVVAWTAMITGYASSNYNARAWECFHEMVKQ 105

Query: 124 GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL- 182
           G       L+ ++  C  +  L  G  +H +V+  G  E S++V  A++++Y+ C   + 
Sbjct: 106 GTSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLG-MEGSLYVDNAMMNMYATCSVTME 164

Query: 183 IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
            A  +F  + ++N+V+WT +I+G     +   G+ +++ M  E  + T   +TI + A A
Sbjct: 165 AACLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENAEVTPYCITIAVRASA 224

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
            +  +  GK IH      GF  +  +  +++ +YC C   L  A+  F   + KD++ W+
Sbjct: 225 SIDSVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCG-YLSEAKHYFHEMEDKDLITWN 283

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
           ++I    +S D SEA+ +F R   +   PN  T  +++++C   + L+ G  +H  I + 
Sbjct: 284 TLISELERS-DSSEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIFRR 342

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA-ARDFVSWTTLISGYGFHGYGEEALQL 421
           G N +V + NAL++MY+KCG+I  S ++F E+   R+ VSWT+++ GYG HGYG EA++L
Sbjct: 343 GFNKNVELANALIDMYAKCGNIPDSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGAEAVEL 402

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
           F +M  SG+ PD I  +A+LSAC HAGLV++    FN +  E  I    + Y C VDLLG
Sbjct: 403 FDKMVSSGIRPDRIVFMAVLSACRHAGLVEKGLKYFNVMESEYGINPDRDIYNCVVDLLG 462

Query: 482 KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLE-VAEMLAHQLIEAEPENAANYT 540
           ++GKI +A ++V  MP KP      +++ AC+ H     ++ + A +++E +P+    Y 
Sbjct: 463 RAGKIGEAYELVERMPFKPDESTWGAILGACKAHKHNGLISRLAARKVMELKPKMVGTYV 522

Query: 541 LLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI--ENE 579
           +LS + +  G W+    V ++MR  G  K  G S I  EN+
Sbjct: 523 MLSYIYAAEGKWVDFARVRKMMRMMGNKKEAGMSWILVENQ 563



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 150/338 (44%), Gaps = 47/338 (13%)

Query: 11  LHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQH---FGLQLHCTALKSGSDADPVISN 67
           L +YKQ L       N  + P  I     A         G Q+H + +K G  ++  + N
Sbjct: 198 LKMYKQML-----LENAEVTPYCITIAVRASASIDSVTTGKQIHASVIKRGFQSNLPVMN 252

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           S++ +Y +      A   F EM  +D I+WN++I+   ++     +L MF+     GFV 
Sbjct: 253 SILDLYCRCGYLSEAKHYFHEMEDKDLITWNTLISELERSD-SSEALLMFQRFESQGFVP 311

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
                  +++ C+ I  L  G+Q+H  +   G F  +V ++ AL+D+Y+KC +   + RV
Sbjct: 312 NCYTFTSLVAACANIAALNCGQQLHGRIFRRG-FNKNVELANALIDMYAKCGNIPDSQRV 370

Query: 188 FEQMVI-RNEVSWTAMISGCIDSQNYDT-GIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
           F ++V  RN VSWT+M+ G   S  Y    ++LF  M   G++P R+    VL AC    
Sbjct: 371 FGEIVDRRNLVSWTSMMIG-YGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSACRHA- 428

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
               G    G  Y   F+              E    ++P R I+           + ++
Sbjct: 429 ----GLVEKGLKY---FNV------------MESEYGINPDRDIY-----------NCVV 458

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC 343
               ++G + EA +L  RM     +P+  T  AIL +C
Sbjct: 459 DLLGRAGKIGEAYELVERMPF---KPDESTWGAILGAC 493


>gi|147771209|emb|CAN67545.1| hypothetical protein VITISV_030949 [Vitis vinifera]
          Length = 598

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 175/557 (31%), Positives = 307/557 (55%), Gaps = 10/557 (1%)

Query: 29  ILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES-AYQLFD 87
           +  S+IKAC      +  G  +HC  L+ G D +  + N+L+ +Y+   K    A  LFD
Sbjct: 42  VYASLIKACNRLSAIRE-GRSIHCHVLRFGLDYNVNVLNALVYLYSSAEKSMGCACALFD 100

Query: 88  EMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE----LLAGIISLCSQIG 143
           ++P +  ++ N +I+ F +N  +   + +F  +   GF L+ +     L  +IS C + G
Sbjct: 101 KIPEKTIVTVNCMISGFVKNKRFHAGVGLFNRVLGGGFDLRVKPNYVTLVILISGCVEFG 160

Query: 144 ELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMI 203
              +G  +H+      S +L   V  AL+ LY++  +   A ++F +  +R+ VSW  MI
Sbjct: 161 RFSIGNSLHSYC-CKTSLDLKNEVRNALIHLYAEFEYMDAAAKLFHETNVRDLVSWNTMI 219

Query: 204 SGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFD 263
           +G   + +      LFR M+   V+  RV+L  ++ AC   RDL  GKA+H +    G +
Sbjct: 220 AGYAKNNDCRNAFSLFREMRIGNVECDRVSLVSLISACTNXRDLHMGKAVHAFIKVSGME 279

Query: 264 FDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSR 323
              H   AL++MY +C  ++   R +F+    +++  W+S+I GY + G   EA+ L++ 
Sbjct: 280 MMIHFETALINMYSKCG-SIELGRKVFDELADENIASWNSMIYGYVECGFNIEALSLWNV 338

Query: 324 MRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG-LNFDVSIGNALMNMYSKCG 382
           ++  +I+P+ VT+L ++S+C     L  G+ ++ YI  +  L+    + NAL++MY+KCG
Sbjct: 339 IQSRKIKPDEVTMLGLISACRSSGDLHQGIQINSYIESSDHLSGSTVLCNALIDMYAKCG 398

Query: 383 SITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILS 442
           S+  +  +F++M  RD +SWT++I GY  +G GEEAL  F +M    +EP+++T L +LS
Sbjct: 399 SMDRAETVFSKMPRRDVISWTSIIVGYAINGEGEEALLAFRKMGAEKIEPNSVTFLGVLS 458

Query: 443 ACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPST 502
           AC+HAGLV + + L++ + K   I   IEH  C VD+  ++G +E+A K V  MP++P+ 
Sbjct: 459 ACDHAGLVDKGKNLYDIMCKYYHIEPKIEHCGCMVDMHARAGMLEEAYKFVKDMPVEPNA 518

Query: 503 RILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAA-NYTLLSMVCSESGNWLGAEEVWRV 561
            +   L++ACR+HG   +   L   LI+ + E+   ++ + S + +E+G W    +   +
Sbjct: 519 VVWRMLINACRVHGDFNLGLNLVSGLIDVKTEHGPEDHVISSNIFAEAGRWDDVLQERSL 578

Query: 562 MRAKGLSKSYGFSRIEN 578
           M A+   K  G S I +
Sbjct: 579 MVAQKAVKLPGKSSIAD 595


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 193/589 (32%), Positives = 305/589 (51%), Gaps = 20/589 (3%)

Query: 9   QTLHLYKQELHPSGLYSNTAI----LPSVIKACAYAQTHQHFGL----QLHCTALKSGS- 59
           Q +   K+ LH     + TA+    LP+        QT +   L    QLH T LKSG+ 
Sbjct: 33  QEMATAKRRLHLRTRMAATALPAARLPAPGMPSPARQTPRRAALRDVPQLHATLLKSGAM 92

Query: 60  DADPVISNSLISMYAKFSKPESAYQL--------FDEMPYRDTISWNSIINCFTQNGFYV 111
              P   +SL+   A  +   S+  L            P R   S+N +I  F + G   
Sbjct: 93  TTSPDSFHSLLEAAALPAPATSSAHLSYAIRLFRLGPHPPRSARSYNILIRSFLRAGHPE 152

Query: 112 RSLEMFREMYLCGFVLKAE-LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTA 170
            +L +F EM     V   +  +A  +  CS++ +L +GR + A     G F +  FV  +
Sbjct: 153 DALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVGRGVQAYAFKRG-FMVDQFVLNS 211

Query: 171 LLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPT 230
           L+ +Y+ C   + A  +F  + ++  ++W AMI+G + + ++   +++F+ M        
Sbjct: 212 LIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFD 271

Query: 231 RVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIF 290
            VTL  V  AC  L D   G+ I  YA   G     +L+ AL+ MY +C E L  AR +F
Sbjct: 272 EVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGE-LDKARRLF 330

Query: 291 ERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLS 350
           +R   +DVV WS++I GY+QS    EA+ +F+ M+   + PN VT++++LS+C     L 
Sbjct: 331 DRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALE 390

Query: 351 HGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYG 410
            G  VH YI +  L   V +G AL++ Y+KCG I  + + F  M  R+  +WT LI G  
Sbjct: 391 TGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMA 450

Query: 411 FHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAI 470
            +G   EAL+LF  M E+ +EP  +T + +L AC+H  LV+E    F ++ ++  I   I
Sbjct: 451 SNGRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRI 510

Query: 471 EHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE 530
           EHY C VDLLG++G I++A + +  MP++P+  +  +L+SAC +H  +E+ E    Q++ 
Sbjct: 511 EHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSACTVHKNVEIGEEALKQIVP 570

Query: 531 AEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIENE 579
            +P ++ NY LLS   +  G W  A  V + M+ KG+ K  G S IE E
Sbjct: 571 LDPCHSGNYILLSNTYASVGQWKNAAMVRKEMKEKGVEKIPGCSLIELE 619



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 120/424 (28%), Positives = 199/424 (46%), Gaps = 8/424 (1%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E  LHL+ + L  + +  +   + + +K+C+        G  +   A K G   D  + N
Sbjct: 152 EDALHLFVEMLDDTAVSPDQHTVANTVKSCSR-MCDLSVGRGVQAYAFKRGFMVDQFVLN 210

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           SLI MYA      +A+ LF  +  +  I+WN++I  + +NG +   +EMF+ M       
Sbjct: 211 SLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPF 270

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
               L  + + C ++G+  LG+ I       G    S  ++TAL+D+Y+KC     A R+
Sbjct: 271 DEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLR-SRNLATALVDMYAKCGELDKARRL 329

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F++M  R+ V+W+AMISG   S      + +F  MQ   V P  VT+  VL ACA L  L
Sbjct: 330 FDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGAL 389

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
             GK +H Y           L  AL+  Y +C   +  A   FE   V++   W+++I+G
Sbjct: 390 ETGKWVHSYIRRKDLPLTVILGTALVDFYAKCG-CIKDAVKAFESMPVRNTWTWTALIKG 448

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA-GLNF 366
            + +G   EA++LFS M    IEP  VT + +L +C+    +  G      + +  G+  
Sbjct: 449 MASNGRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICP 508

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFHG---YGEEALQLF 422
            +     ++++  + G I  ++Q    M    + V W  L+S    H     GEEAL+  
Sbjct: 509 RIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSACTVHKNVEIGEEALKQI 568

Query: 423 LEMQ 426
           + + 
Sbjct: 569 VPLD 572


>gi|293333548|ref|NP_001170485.1| uncharacterized protein LOC100384484 [Zea mays]
 gi|238005588|gb|ACR33829.1| unknown [Zea mays]
 gi|413920755|gb|AFW60687.1| hypothetical protein ZEAMMB73_143396 [Zea mays]
          Length = 569

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 178/538 (33%), Positives = 295/538 (54%), Gaps = 13/538 (2%)

Query: 48  LQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT-- 105
           L +H  A+  G  A+P  + SL++  A  S    A ++FD  P RD   WN+++   +  
Sbjct: 38  LPIHARAIVLGVSANPAFATSLLAGVAPASL-AYARRVFDATPVRDAYMWNTLLRAHSHS 96

Query: 106 QNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSV 165
           Q      +L +++ M   G          ++  C+   EL LGR +H  V+    F L+ 
Sbjct: 97  QLSHAADTLALYKRMRAAGVAPDHYTYPIVLPACAAARELWLGRAVHGDVV---RFALAG 153

Query: 166 --FVSTALLDLYSKCHHWLIALRVFEQM--VIRNEVSWTAMISGCIDSQNYDTGIDLFRA 221
             FV +AL+ +Y +      A  VF +     R  VSWT+M++G + +  +   + LF  
Sbjct: 154 DGFVHSALITMYFQEGEVADAELVFAESHGSSRTVVSWTSMVAGYVQNYYFGEAVALFGT 213

Query: 222 MQREGVKPTRVTLTIVLLACAELRD-LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECT 280
           M  EGV P  +TL I  L C + ++ L  G+ +HG+    GFD +  L+ AL+ MY +C 
Sbjct: 214 MIAEGVLPNEITL-ISFLPCLQGQEWLDAGEMVHGFVIRLGFDANIPLANALIAMYGKCG 272

Query: 281 EALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAIL 340
            ++  A+ +FE    + +  W++++  Y Q  D+ EA+K F RM  E++  + VTL+++L
Sbjct: 273 -SIPMAQTLFEGMPARSLASWNTMVAMYEQHADVVEAIKFFRRMLTEKVGFDCVTLVSVL 331

Query: 341 SSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFV 400
           S+C R   L  G  VH      GL+ D  IGN L++MY+KCG I S+  +F+ +  R  V
Sbjct: 332 SACARSGALQTGKWVHELARNHGLDTDARIGNVLVDMYAKCGEIASARNVFDCLRMRSVV 391

Query: 401 SWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNV 460
           SW+ +IS Y  HG  EEAL+LF  M+  GV P++ T  A+L AC H+GLV+E    FN++
Sbjct: 392 SWSAMISAYANHGASEEALKLFSLMKNEGVRPNSFTFTAVLVACGHSGLVEEGLKHFNSI 451

Query: 461 MKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEV 520
           + + +++  +EHYAC VD+LG++G++ +A +++  M + P   +  + ++ C++HG LE+
Sbjct: 452 LSDYQMSPTLEHYACMVDMLGRAGRLIEAYEIIRGMSLCPDKCVWGAFLAGCKLHGNLEL 511

Query: 521 AEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIEN 578
           AE +A  L ++   +   Y L+S +  E+G    AE +   M+   L+K+ G S I  
Sbjct: 512 AEFVARDLFQSGSNDVTFYVLMSNMYFEAGMLKDAERMRWAMKEMELNKTAGRSAINQ 569



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 156/347 (44%), Gaps = 16/347 (4%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V  +++ + + L+   +   G+  N   L S +  C   Q     G  +H   ++ G DA
Sbjct: 199 VQNYYFGEAVALFGTMI-AEGVLPNEITLISFLP-CLQGQEWLDAGEMVHGFVIRLGFDA 256

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           +  ++N+LI+MY K      A  LF+ MP R   SWN+++  + Q+   V +++ FR M 
Sbjct: 257 NIPLANALIAMYGKCGSIPMAQTLFEGMPARSLASWNTMVAMYEQHADVVEAIKFFRRML 316

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
                     L  ++S C++ G L+ G+ +H L    G  +    +   L+D+Y+KC   
Sbjct: 317 TEKVGFDCVTLVSVLSACARSGALQTGKWVHELARNHG-LDTDARIGNVLVDMYAKCGEI 375

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             A  VF+ + +R+ VSW+AMIS   +    +  + LF  M+ EGV+P   T T VL+AC
Sbjct: 376 ASARNVFDCLRMRSVVSWSAMISAYANHGASEEALKLFSLMKNEGVRPNSFTFTAVLVAC 435

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK----- 296
                  +G    G  +      D+ +S  L H  C         R+I     ++     
Sbjct: 436 GH-----SGLVEEGLKHFNSILSDYQMSPTLEHYACMVDMLGRAGRLIEAYEIIRGMSLC 490

Query: 297 -DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSS 342
            D  +W + + G    G+L   +  F    L +   N VT   ++S+
Sbjct: 491 PDKCVWGAFLAGCKLHGNLE--LAEFVARDLFQSGSNDVTFYVLMSN 535


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 174/533 (32%), Positives = 289/533 (54%), Gaps = 3/533 (0%)

Query: 48  LQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQN 107
           L +H    K G  AD  +  +LI  Y+     ++A Q+FD + ++D +SW  ++ C+ +N
Sbjct: 124 LSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAEN 183

Query: 108 GFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFV 167
             +  SL +F +M + G+      ++  +  C+ +   ++G+ +H   +    ++  ++V
Sbjct: 184 YCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCAL-KVCYDRDLYV 242

Query: 168 STALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLF-RAMQREG 226
             ALL+LY+K      A + FE+M   + + W+ MIS    S      ++LF R  Q   
Sbjct: 243 GIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSV 302

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           V P   T   VL ACA L  L  G  IH      G D +  +S ALM +Y +C E  +  
Sbjct: 303 VVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSV 362

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
           ++ F  +  K+ V W++II GY Q GD  +A+ LFS M    I+P  VT  ++L +    
Sbjct: 363 KL-FTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASL 421

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
             L  G  +H   +K   N D  + N+L++MY+KCG I  +   F++M  +D VSW  LI
Sbjct: 422 VALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALI 481

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
            GY  HG G EAL LF  MQ+S  +P+ +T + +LSAC++AGL+ +    F +++++  I
Sbjct: 482 CGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGI 541

Query: 467 ALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAH 526
              IEHY C V LLG+SG+ ++A K++  +P +PS  +  +L+ AC IH  L++ ++ A 
Sbjct: 542 EPCIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQ 601

Query: 527 QLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIENE 579
           +++E EP++ A + LLS + + +  W     V + M+ K + K  G S +EN+
Sbjct: 602 RVLEMEPQDDATHVLLSNMYATAKRWDNVAYVRKNMKKKKVKKEPGLSWVENQ 654



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 152/514 (29%), Positives = 261/514 (50%), Gaps = 22/514 (4%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G  LHC  LK G+  D    N L++ Y  F   E A +LFDEMP  +T+S+ ++   F++
Sbjct: 22  GKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSR 81

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           +  + R+  +   ++  G+ +   +   ++ L   +   +    +HA V   G  +   F
Sbjct: 82  SHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGH-QADAF 140

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           V TAL+D YS C +   A +VF+ +  ++ VSWT M++   ++  ++  + LF  M+  G
Sbjct: 141 VGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMG 200

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
            +P   T++  L +C  L   + GK++HG A    +D D ++  AL+ +Y +  E +  A
Sbjct: 201 YRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGE-IAEA 259

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER-IEPNSVTLLAILSSCTR 345
           +  FE     D++ WS +I  Y+QS    EA++LF RMR    + PN+ T  ++L +C  
Sbjct: 260 QQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACAS 319

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
              L+ G  +H  ++K GL+ +V + NALM++Y+KCG I +S ++F     ++ V+W T+
Sbjct: 320 LVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTI 379

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLV-----KEAETLFNNV 460
           I GY   G GE+AL LF  M    ++P  +T  ++L A   A LV     ++  +L    
Sbjct: 380 IVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRA--SASLVALEPGRQIHSLTIKT 437

Query: 461 MKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG---- 516
           M  K   +A       +D+  K G+I+DA      M  +      ++L+    IHG    
Sbjct: 438 MYNKDSVVA----NSLIDMYAKCGRIDDARLTFDKMDKQDEVS-WNALICGYSIHGLGME 492

Query: 517 RLEVAEMLAHQLIEAEPENAANYTLLSMVCSESG 550
            L + +M+  Q   ++P       +LS  CS +G
Sbjct: 493 ALNLFDMM--QQSNSKPNKLTFVGVLS-ACSNAG 523



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 128/245 (52%), Gaps = 2/245 (0%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           ++ L L+ +    S +  N     SV++ACA +    + G Q+H   LK G D++  +SN
Sbjct: 288 KEALELFCRMRQSSVVVPNNFTFASVLQACA-SLVLLNLGNQIHSCVLKVGLDSNVFVSN 346

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +L+ +YAK  + E++ +LF     ++ ++WN+II  + Q G   ++L +F  M       
Sbjct: 347 ALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQP 406

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
                + ++   + +  LE GRQIH+L I     + SV V+ +L+D+Y+KC     A   
Sbjct: 407 TEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSV-VANSLIDMYAKCGRIDDARLT 465

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F++M  ++EVSW A+I G          ++LF  MQ+   KP ++T   VL AC+    L
Sbjct: 466 FDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLL 525

Query: 248 RNGKA 252
             G+A
Sbjct: 526 DKGRA 530



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 122/256 (47%), Gaps = 8/256 (3%)

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
           RD   GK++H +    G   D      L++ Y      L  A  +F+   + + V + ++
Sbjct: 17  RDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFG-FLEDASKLFDEMPLTNTVSFVTL 75

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
            +G+S+S     A +L  R+  E  E N      +L            L VH Y+ K G 
Sbjct: 76  AQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGH 135

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
             D  +G AL++ YS CG++ ++ Q+F+ +  +D VSWT +++ Y  +   E++L LF +
Sbjct: 136 QADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQ 195

Query: 425 MQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLLG 481
           M+  G  P+  T+ A L +CN     K  +++    +K   ++ + + I      ++L  
Sbjct: 196 MRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGI----ALLELYT 251

Query: 482 KSGKIEDACKVVSTMP 497
           KSG+I +A +    MP
Sbjct: 252 KSGEIAEAQQFFEEMP 267



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 86/170 (50%), Gaps = 1/170 (0%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G Q+H   +K+  + D V++NSLI MYAK  + + A   FD+M  +D +SWN++I  ++ 
Sbjct: 427 GRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSI 486

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           +G  + +L +F  M             G++S CS  G L+ GR     ++ D   E  + 
Sbjct: 487 HGLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIE 546

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEV-SWTAMISGCIDSQNYDTG 215
             T ++ L  +   +  A+++  ++  +  V  W A++  C+  +N D G
Sbjct: 547 HYTCMVWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLG 596



 Score = 45.1 bits (105), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 38/71 (53%)

Query: 339 ILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARD 398
           +L    R    + G  +HC+I+K G + D+   N L+N Y   G +  + ++F+EM   +
Sbjct: 9   MLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDEMPLTN 68

Query: 399 FVSWTTLISGY 409
            VS+ TL  G+
Sbjct: 69  TVSFVTLAQGF 79


>gi|242041975|ref|XP_002468382.1| hypothetical protein SORBIDRAFT_01g044940 [Sorghum bicolor]
 gi|241922236|gb|EER95380.1| hypothetical protein SORBIDRAFT_01g044940 [Sorghum bicolor]
          Length = 1026

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 172/563 (30%), Positives = 301/563 (53%), Gaps = 6/563 (1%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           ++  +G+  +   + +VI  C Y +   H    +H  A+++  ++   + N+L++MYA  
Sbjct: 433 KMQIAGVAPDATTVINVISGCRYTK-DLHVAKSIHAYAVRNRFESYQSVMNALLAMYADC 491

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
               ++Y LF +M  R  ISWN++I+ F + G    SL +F +M+          L G+I
Sbjct: 492 GDISTSYTLFQKMEVRMLISWNTMISGFAEIGDSETSLTLFCQMFHEEVWFDLVTLIGLI 551

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
           S  S   +  +G  +H+L I  G     V ++ AL+ +Y+ C       ++F     RN 
Sbjct: 552 SSLSVSEDAIVGESVHSLAIKSGCIS-DVSLTNALITMYANCGIVEAGQQLFNSFCSRNT 610

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           +++ A++SG   +   +  + LF  M +   KP  VTL  +L  C   +    GK IH Y
Sbjct: 611 ITYNALMSGYRKNNVSEKILPLFTQMVKNDEKPNLVTLLNLLPVC---QSQLQGKCIHSY 667

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
           A       +  L  + M MY      +   R IF     +++++W++ +    Q      
Sbjct: 668 AVRNFTRLETPLFTSAMGMYSRFNN-IEYCRTIFSLVSARNLIVWNAFLSACVQCKQADM 726

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
            +  F  M    + P+ VT+LA++S+C++         +   I++ G + ++ + NAL++
Sbjct: 727 VVDYFKHMLFLNVRPDEVTMLALISACSQLGNADFAACIMAVILQKGFSMNILVLNALID 786

Query: 377 MYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAIT 436
            +S+CGSI+ + ++F+    +D V+W  +I+ Y  HG GE AL LF  M +SGV+PD IT
Sbjct: 787 THSRCGSISFARELFDSSVEKDSVTWGAMINAYSMHGNGEAALDLFSMMIDSGVDPDDIT 846

Query: 437 VLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
            ++ILSAC+H GLV++  TLF ++  +  I   +EHYAC VDLLG++G +++A  +V +M
Sbjct: 847 FVSILSACSHNGLVEQGRTLFKSLQADHGITPRMEHYACMVDLLGRTGHLDEAYDIVRSM 906

Query: 497 PMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAE 556
           P  PS  +L SL+ ACR HG  ++ E +   LI++E   + +Y +LS + + +G W   E
Sbjct: 907 PFTPSDNLLESLLGACRFHGNYKIGESVGKLLIKSEYGKSRSYVMLSNIYASAGKWSDCE 966

Query: 557 EVWRVMRAKGLSKSYGFSRIENE 579
           ++   M AKGL K+ G  ++E++
Sbjct: 967 QLRLDMEAKGLRKNVGVRKLESQ 989



 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 139/412 (33%), Positives = 226/412 (54%), Gaps = 9/412 (2%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRD---TISWNSIINCFT 105
           ++H     +G+  D  +   L+  Y  F KP SA  LF E  YR      S N ++ CF+
Sbjct: 59  EIHARLAVAGAIQDRFVVTGLVERYVSFGKPASAALLFAE-AYRGRPAVYSLNLVVRCFS 117

Query: 106 QNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSV 165
            +GF+   L+++R   LCGF         +I  C+    L+LGRQ+H  V+  G    +V
Sbjct: 118 DHGFHRELLDLYRG--LCGFGSDNFTFPPVIRACTAASCLQLGRQVHCRVLRTGHGS-NV 174

Query: 166 FVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
            V TALLD+Y+K     ++ RVF+ MV+R+ +SW AM+SG   +  +   ++  + MQ+ 
Sbjct: 175 GVQTALLDMYAKAGQIDVSRRVFDCMVLRDLISWNAMVSGYSVNGCFREAVETLQEMQQC 234

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
           G+ P   TL  ++  C    D   G ++H +A   G   D  L++AL+ MY    + L  
Sbjct: 235 GMSPNASTLVGIVGMCGSAGDRVAGDSLHAFALKGGTIDDESLTSALISMYAAFDD-LSS 293

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           +R++F+   VKD+V ++S+I  Y Q  +  EA ++F  M    + PN +TL+++L SC+ 
Sbjct: 294 SRLVFDLQPVKDLVSFNSMISAYMQHSNWKEAFEVFRLMHCAGVGPNLITLVSVLPSCSD 353

Query: 346 QSF-LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
             F ++HG  VH  I+K GL   VS+ +AL++MYSK G + SS  +F     ++ + W +
Sbjct: 354 LLFGINHGESVHGMIIKLGLAEQVSVVSALVSMYSKLGKLDSSSLLFCCFTEKNNILWNS 413

Query: 405 LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETL 456
           +ISGY  +     AL  F +MQ +GV PDA TV+ ++S C +   +  A+++
Sbjct: 414 MISGYLVNNEWNMALDAFCKMQIAGVAPDATTVINVISGCRYTKDLHVAKSI 465



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 129/439 (29%), Positives = 236/439 (53%), Gaps = 7/439 (1%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           F+ + L LY+      G  S+    P VI+AC  A   Q  G Q+HC  L++G  ++  +
Sbjct: 121 FHRELLDLYRG---LCGFGSDNFTFPPVIRACTAASCLQ-LGRQVHCRVLRTGHGSNVGV 176

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
             +L+ MYAK  + + + ++FD M  RD ISWN++++ ++ NG +  ++E  +EM  CG 
Sbjct: 177 QTALLDMYAKAGQIDVSRRVFDCMVLRDLISWNAMVSGYSVNGCFREAVETLQEMQQCGM 236

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
              A  L GI+ +C   G+   G  +HA  +  G+ +     S AL+ +Y+       + 
Sbjct: 237 SPNASTLVGIVGMCGSAGDRVAGDSLHAFALKGGTIDDESLTS-ALISMYAAFDDLSSSR 295

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
            VF+   +++ VS+ +MIS  +   N+    ++FR M   GV P  +TL  VL +C++L 
Sbjct: 296 LVFDLQPVKDLVSFNSMISAYMQHSNWKEAFEVFRLMHCAGVGPNLITLVSVLPSCSDLL 355

Query: 246 -DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
             + +G+++HG     G      + +AL+ MY +  + L  + ++F     K+ ++W+S+
Sbjct: 356 FGINHGESVHGMIIKLGLAEQVSVVSALVSMYSKLGK-LDSSSLLFCCFTEKNNILWNSM 414

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
           I GY  + + + A+  F +M++  + P++ T++ ++S C     L     +H Y ++   
Sbjct: 415 ISGYLVNNEWNMALDAFCKMQIAGVAPDATTVINVISGCRYTKDLHVAKSIHAYAVRNRF 474

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
               S+ NAL+ MY+ CG I++S+ +F +M  R  +SW T+ISG+   G  E +L LF +
Sbjct: 475 ESYQSVMNALLAMYADCGDISTSYTLFQKMEVRMLISWNTMISGFAEIGDSETSLTLFCQ 534

Query: 425 MQESGVEPDAITVLAILSA 443
           M    V  D +T++ ++S+
Sbjct: 535 MFHEEVWFDLVTLIGLISS 553



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 169/344 (49%), Gaps = 8/344 (2%)

Query: 149 RQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF-EQMVIRNEVSWTAMISGCI 207
           R+IHA + V G+ +   FV T L++ Y        A  +F E    R  V    ++  C 
Sbjct: 58  REIHARLAVAGAIQ-DRFVVTGLVERYVSFGKPASAALLFAEAYRGRPAVYSLNLVVRCF 116

Query: 208 DSQNYDTGI-DLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDH 266
               +   + DL+R +   G      T   V+ AC     L+ G+ +H      G   + 
Sbjct: 117 SDHGFHRELLDLYRGLC--GFGSDNFTFPPVIRACTAASCLQLGRQVHCRVLRTGHGSNV 174

Query: 267 HLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRL 326
            +  AL+ MY +  + +  +R +F+   ++D++ W++++ GYS +G   EA++    M+ 
Sbjct: 175 GVQTALLDMYAKAGQ-IDVSRRVFDCMVLRDLISWNAMVSGYSVNGCFREAVETLQEMQQ 233

Query: 327 ERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITS 386
             + PN+ TL+ I+  C        G  +H + +K G   D S+ +AL++MY+    ++S
Sbjct: 234 CGMSPNASTLVGIVGMCGSAGDRVAGDSLHAFALKGGTIDDESLTSALISMYAAFDDLSS 293

Query: 387 SHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH 446
           S  +F+    +D VS+ ++IS Y  H   +EA ++F  M  +GV P+ IT++++L +C+ 
Sbjct: 294 SRLVFDLQPVKDLVSFNSMISAYMQHSNWKEAFEVFRLMHCAGVGPNLITLVSVLPSCSD 353

Query: 447 AGL-VKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
               +   E++   ++K   +A  +   +  V +  K GK++ +
Sbjct: 354 LLFGINHGESVHGMIIK-LGLAEQVSVVSALVSMYSKLGKLDSS 396



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 146/336 (43%), Gaps = 44/336 (13%)

Query: 234 LTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERT 293
           LT++L     L+ LR    IH      G   D  +   L+  Y    +    A +  E  
Sbjct: 44  LTVLLRDTCSLKCLRE---IHARLAVAGAIQDRFVVTGLVERYVSFGKPASAALLFAEAY 100

Query: 294 KVKDVVI-WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHG 352
           + +  V   + ++R +S  G   E + L+    L     ++ T   ++ +CT  S L  G
Sbjct: 101 RGRPAVYSLNLVVRCFSDHGFHRELLDLYRG--LCGFGSDNFTFPPVIRACTAASCLQLG 158

Query: 353 LGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFH 412
             VHC +++ G   +V +  AL++MY+K G I  S ++F+ M  RD +SW  ++SGY  +
Sbjct: 159 RQVHCRVLRTGHGSNVGVQTALLDMYAKAGQIDVSRRVFDCMVLRDLISWNAMVSGYSVN 218

Query: 413 GYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEH 472
           G   EA++   EMQ+ G+ P+A T++ I+  C  AG         + V  +   A A+  
Sbjct: 219 GCFREAVETLQEMQQCGMSPNASTLVGIVGMCGSAG---------DRVAGDSLHAFAL-- 267

Query: 473 YACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE 532
                    K G I+D     + + M  +   LSS                 +  + + +
Sbjct: 268 ---------KGGTIDDESLTSALISMYAAFDDLSS-----------------SRLVFDLQ 301

Query: 533 P-ENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567
           P ++  ++  +     +  NW  A EV+R+M   G+
Sbjct: 302 PVKDLVSFNSMISAYMQHSNWKEAFEVFRLMHCAGV 337


>gi|242084292|ref|XP_002442571.1| hypothetical protein SORBIDRAFT_08g022230 [Sorghum bicolor]
 gi|241943264|gb|EES16409.1| hypothetical protein SORBIDRAFT_08g022230 [Sorghum bicolor]
          Length = 698

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 184/566 (32%), Positives = 305/566 (53%), Gaps = 6/566 (1%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           +++H  GL ++T  L S +++ A A+  +  G QL   A+KSG   +   +++L+ +YAK
Sbjct: 84  KDMHARGLTASTFALGSALRSAAAARRPE-LGAQLQSFAVKSGLVDNVFSASALLDVYAK 142

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
             +   A ++FD MP R+T+SWN++I  + ++    +++E+F EM     V      A +
Sbjct: 143 CGRLSDARRVFDGMPVRNTVSWNALIAGYAESRKPAQAMELFLEMQRVELVPDDATFAAL 202

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           ++         L +Q+H  +   GS  L + V  A +  YS+C  +  + R+F+ +  R+
Sbjct: 203 LATVEGPSWYSLMQQLHGKIAKYGS-ALGLVVLNAAITAYSQCGAFADSRRIFDGIQSRD 261

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQRE-GVKPTRVTLTIVLLACAELR-DLRNGKAI 253
            +SW +M+         D  +  F  M RE GV+P   + T V+  C+E   D R G++I
Sbjct: 262 LISWNSMLGAYAYHGMDDEAMRFFVRMMRESGVQPDMYSFTSVVSVCSEHGCDDRQGRSI 321

Query: 254 HGYAYCCGFDFDHHLSAALMHMYCECTE--ALHPARIIFERTKVKDVVIWSSIIRGYSQS 311
           H      G +   H+  A++ MY   TE   +  A   F+    KD V W+S++ GYS  
Sbjct: 322 HSLVVKIGLEGVTHVCNAMIAMYTRFTENCMMEDAYKCFDSLVFKDAVSWNSMLTGYSHH 381

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
           G  S+A++ F  MR E +  +   L A L SC+  + L  G  VH  ++++G + +  + 
Sbjct: 382 GLSSDALRFFRFMRAENVSTDEFALSAALRSCSDLAVLRLGRQVHSLVIQSGFSSNDFVS 441

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
           ++L+ MYSKCG +  + + F E      V W +++ GY  HG  +    LF EM +  V 
Sbjct: 442 SSLIFMYSKCGMVGDARKSFEEADKGSSVPWNSMMFGYAQHGQAQTVTDLFSEMLDHKVP 501

Query: 432 PDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACK 491
            D +T +A+L+A +H GLV E   + N++    KI L +EHYAC VDL G++G+++ A +
Sbjct: 502 LDHVTFVALLTAYSHGGLVDEGSEILNSMETRYKIPLRMEHYACGVDLYGRAGQLDKAKE 561

Query: 492 VVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGN 551
           ++ +MP +P   +  +L+ ACRIHG +E+A  +A  L  AEP   + Y LLS + S  G 
Sbjct: 562 LIESMPFQPDAMVWMTLLGACRIHGNMELASDVASHLFVAEPRQHSTYVLLSSMYSGRGM 621

Query: 552 WLGAEEVWRVMRAKGLSKSYGFSRIE 577
           W     V +VM+ +GLSK  G+S IE
Sbjct: 622 WSDRATVQKVMKNRGLSKVPGWSWIE 647



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 120/411 (29%), Positives = 208/411 (50%), Gaps = 25/411 (6%)

Query: 56  KSGSDADPVISNSLISMYAKFSKPES----AYQLFDEMPYRDTISWNSIINCFTQNGFYV 111
           KSG+ + P   N L++ Y+  S P S    A ++FDE+P  D +SWNS++      G + 
Sbjct: 20  KSGATS-PTPWNQLLTAYSA-SGPGSGLAAARRVFDEIPRPDAVSWNSLLAAHVAAGAHR 77

Query: 112 RSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTAL 171
            +  + ++M+  G       L   +   +     ELG Q+ +  +  G  + +VF ++AL
Sbjct: 78  DAWRLLKDMHARGLTASTFALGSALRSAAAARRPELGAQLQSFAVKSGLVD-NVFSASAL 136

Query: 172 LDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTR 231
           LD+Y+KC     A RVF+ M +RN VSW A+I+G  +S+     ++LF  MQR  + P  
Sbjct: 137 LDVYAKCGRLSDARRVFDGMPVRNTVSWNALIAGYAESRKPAQAMELFLEMQRVELVPDD 196

Query: 232 VTLTIVLLACAE------LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
            T    LLA  E      L    +GK I  Y    G      L+AA+   Y +C  A   
Sbjct: 197 ATFA-ALLATVEGPSWYSLMQQLHGK-IAKYGSALGLVV---LNAAIT-AYSQCG-AFAD 249

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSR-MRLERIEPNSVTLLAILSSCT 344
           +R IF+  + +D++ W+S++  Y+  G   EAM+ F R MR   ++P+  +  +++S C+
Sbjct: 250 SRRIFDGIQSRDLISWNSMLGAYAYHGMDDEAMRFFVRMMRESGVQPDMYSFTSVVSVCS 309

Query: 345 RQSFLS-HGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS---ITSSHQIFNEMAARDFV 400
                   G  +H  ++K GL     + NA++ MY++      +  +++ F+ +  +D V
Sbjct: 310 EHGCDDRQGRSIHSLVVKIGLEGVTHVCNAMIAMYTRFTENCMMEDAYKCFDSLVFKDAV 369

Query: 401 SWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVK 451
           SW ++++GY  HG   +AL+ F  M+   V  D   + A L +C+   +++
Sbjct: 370 SWNSMLTGYSHHGLSSDALRFFRFMRAENVSTDEFALSAALRSCSDLAVLR 420



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 115/236 (48%), Gaps = 4/236 (1%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           ++ +  + + +  SG+  +     SV+  C+        G  +H   +K G +    + N
Sbjct: 279 DEAMRFFVRMMRESGVQPDMYSFTSVVSVCSEHGCDDRQGRSIHSLVVKIGLEGVTHVCN 338

Query: 68  SLISMYAKFSKP---ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG 124
           ++I+MY +F++    E AY+ FD + ++D +SWNS++  ++ +G    +L  FR M    
Sbjct: 339 AMIAMYTRFTENCMMEDAYKCFDSLVFKDAVSWNSMLTGYSHHGLSSDALRFFRFMRAEN 398

Query: 125 FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
                  L+  +  CS +  L LGRQ+H+LVI  G F  + FVS++L+ +YSKC     A
Sbjct: 399 VSTDEFALSAALRSCSDLAVLRLGRQVHSLVIQSG-FSSNDFVSSSLIFMYSKCGMVGDA 457

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
            + FE+    + V W +M+ G        T  DLF  M    V    VT   +L A
Sbjct: 458 RKSFEEADKGSSVPWNSMMFGYAQHGQAQTVTDLFSEMLDHKVPLDHVTFVALLTA 513



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 122/271 (45%), Gaps = 4/271 (1%)

Query: 282 ALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILS 341
            L  AR +F+     D V W+S++  +  +G   +A +L   M    +  ++  L + L 
Sbjct: 44  GLAAARRVFDEIPRPDAVSWNSLLAAHVAAGAHRDAWRLLKDMHARGLTASTFALGSALR 103

Query: 342 SCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS 401
           S         G  +  + +K+GL  +V   +AL+++Y+KCG ++ + ++F+ M  R+ VS
Sbjct: 104 SAAAARRPELGAQLQSFAVKSGLVDNVFSASALLDVYAKCGRLSDARRVFDGMPVRNTVS 163

Query: 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVM 461
           W  LI+GY       +A++LFLEMQ   + PD  T  A+L+           + L   + 
Sbjct: 164 WNALIAGYAESRKPAQAMELFLEMQRVELVPDDATFAALLATVEGPSWYSLMQQLHGKIA 223

Query: 462 KEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA 521
           K    AL +      +    + G   D+ ++   +  +      +S++ A   HG  + A
Sbjct: 224 KYGS-ALGLVVLNAAITAYSQCGAFADSRRIFDGIQSRDLIS-WNSMLGAYAYHGMDDEA 281

Query: 522 EMLAHQLIEAEPENAANYTLLSM--VCSESG 550
                +++         Y+  S+  VCSE G
Sbjct: 282 MRFFVRMMRESGVQPDMYSFTSVVSVCSEHG 312


>gi|357440905|ref|XP_003590730.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479778|gb|AES60981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 627

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 177/540 (32%), Positives = 298/540 (55%), Gaps = 15/540 (2%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           Q H   L +    +  ++  LIS YA F     +  +FD +  ++   WNS+IN + +N 
Sbjct: 47  QCHSQILTNCFSQNAFLTTRLISAYATFGDSIMSKLVFDSVHTKNVYLWNSLINGYVKNH 106

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
            +  ++ +FR+M  C  +     LA I  +  +I +L LG+ IH   +  G F   + V 
Sbjct: 107 QFDNAIVLFRQMGRC-LLPDDYTLATISKVSGEIQDLVLGKLIHGKSLRIG-FVSDIVVG 164

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGI-----DLFRAMQ 223
            +++ +Y +C  +  A++VF++M  RN  S+  +ISGC    N D  +     + FR MQ
Sbjct: 165 NSVMSMYIRCREFGDAMKVFDEMPQRNVGSFNVIISGCAALGNLDYSLYADLWNFFRRMQ 224

Query: 224 REGVKPTRVTLTIVL-LACAELRDLRNGKAIHGYAYCCGFDF----DHHLSAALMHMYCE 278
            +G      T+  +L + C       +G+ +H Y    G D     D H+ ++L+ MY  
Sbjct: 225 CQGYNADAFTVASLLPMCCDSDGKFDHGRELHCYLVKNGLDLKMCSDVHMGSSLIDMYSR 284

Query: 279 CTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM-RLERIEPNSVTLL 337
            +  L  +R +F++ K +++ +W+++I GY Q+G    A+ LF  M R +RI PN V+L+
Sbjct: 285 -SNKLVLSRRVFDQMKSRNIYVWTAMINGYVQNGAPEGALILFREMQRKDRIRPNRVSLV 343

Query: 338 AILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIF-NEMAA 396
           ++L +C     L  G  VH + +K   N  +S+ NAL++MY+KCGS+  + ++F N   +
Sbjct: 344 SVLPACGLLVGLMGGKQVHAFSIKMEFNDYISLRNALIDMYAKCGSLDYARRVFDNGSYS 403

Query: 397 RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETL 456
           +D ++W+++IS YG HG G+EAL  + EM + G++PD ITV+ +LSAC  +GLV E  ++
Sbjct: 404 KDAITWSSIISAYGLHGKGQEALTTYYEMLQQGIKPDMITVVGVLSACCRSGLVDEGISI 463

Query: 457 FNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG 516
           +N++  E ++  ++E   C VDLLG+SG+++ A   +  MP+ P   +  SL++A  IHG
Sbjct: 464 YNSLTTEYEMKPSVEICGCVVDLLGRSGQLDQALDFIREMPIIPGPSVWGSLLTASVIHG 523

Query: 517 RLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
                ++    L+E EPEN +NY  LS   + S  W    EV  +M+ +GL K  G S I
Sbjct: 524 NSMTRDLAYRCLLELEPENPSNYISLSNTYASSRRWDEITEVRSMMKERGLRKVPGISWI 583



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 123/429 (28%), Positives = 212/429 (49%), Gaps = 25/429 (5%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V  H ++  + L++Q      L  +   L ++ K     Q     G  +H  +L+ G  +
Sbjct: 103 VKNHQFDNAIVLFRQ--MGRCLLPDDYTLATISKVSGEIQDLV-LGKLIHGKSLRIGFVS 159

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG-----FYVRSLEM 116
           D V+ NS++SMY +  +   A ++FDEMP R+  S+N II+     G      Y      
Sbjct: 160 DIVVGNSVMSMYIRCREFGDAMKVFDEMPQRNVGSFNVIISGCAALGNLDYSLYADLWNF 219

Query: 117 FREMYLCGFVLKAELLAGIISL-CSQIGELELGRQIHALVIVDGSFEL----SVFVSTAL 171
           FR M   G+   A  +A ++ + C   G+ + GR++H  ++ +G  +L     V + ++L
Sbjct: 220 FRRMQCQGYNADAFTVASLLPMCCDSDGKFDHGRELHCYLVKNG-LDLKMCSDVHMGSSL 278

Query: 172 LDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG-VKPT 230
           +D+YS+ +  +++ RVF+QM  RN   WTAMI+G + +   +  + LFR MQR+  ++P 
Sbjct: 279 IDMYSRSNKLVLSRRVFDQMKSRNIYVWTAMINGYVQNGAPEGALILFREMQRKDRIRPN 338

Query: 231 RVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIF 290
           RV+L  VL AC  L  L  GK +H ++    F+    L  AL+ MY +C    +  R+  
Sbjct: 339 RVSLVSVLPACGLLVGLMGGKQVHAFSIKMEFNDYISLRNALIDMYAKCGSLDYARRVFD 398

Query: 291 ERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLS 350
             +  KD + WSSII  Y   G   EA+  +  M  + I+P+ +T++ +LS+C R   + 
Sbjct: 399 NGSYSKDAITWSSIISAYGLHGKGQEALTTYYEMLQQGIKPDMITVVGVLSACCRSGLVD 458

Query: 351 HGLGVHC-----YIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS-WTT 404
            G+ ++      Y MK      V I   ++++  + G +  +     EM      S W +
Sbjct: 459 EGISIYNSLTTEYEMKPS----VEICGCVVDLLGRSGQLDQALDFIREMPIIPGPSVWGS 514

Query: 405 LISGYGFHG 413
           L++    HG
Sbjct: 515 LLTASVIHG 523


>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Vitis vinifera]
          Length = 751

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 182/579 (31%), Positives = 315/579 (54%), Gaps = 15/579 (2%)

Query: 5   HFYEQTLHLYK----QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           HF +  + + K    + +  + LYS      S+I+ C   ++      ++   ALK G  
Sbjct: 57  HFSQSNIKIRKLCITETIQSTKLYS------SLIQQCIGIKSITDI-TKIQSHALKRGFH 109

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
               + N LI  Y K      A ++FDE+P+R  ++WNS+I  + +NG    ++++++ M
Sbjct: 110 HS--LGNKLIDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRM 167

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
              G +      + +    S +G +  G++ H   +V G    +VFV +AL+D+Y+K   
Sbjct: 168 VPDGILPDEFTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGK 227

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
              A  V +Q+V ++ V +TA+I G          + +FR M ++G++    TL+ VL+ 
Sbjct: 228 MRDARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKGIEANEYTLSSVLVC 287

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
           C  L DL +G+ IHG     G +       +L+ MY  C   +  +  +F++    + V 
Sbjct: 288 CGNLEDLTSGRLIHGLIVKAGLESAVASQTSLLTMYYRCG-LVDDSLKVFKQFINPNQVT 346

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           W+S+I G  Q+G    A+  F +M    I PNS TL ++L +C+  + L  G  +H  +M
Sbjct: 347 WTSVIVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQIHAIVM 406

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
           K GL+ D  +G AL++ Y KCGS   +  +FN +   D VS  ++I  Y  +G+G EALQ
Sbjct: 407 KFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQNGFGHEALQ 466

Query: 421 LFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLL 480
           LF  M+++G+EP+ +T L +LSACN+AGL++E   +F++      I L  +HYAC VDLL
Sbjct: 467 LFSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNSGNIELTKDHYACMVDLL 526

Query: 481 GKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYT 540
           G++G++++A  +++ + +     I  +L+SACRIHG +E+A+ + +++I+  PE+   + 
Sbjct: 527 GRAGRLKEAEMLINQVNISDVV-IWRTLLSACRIHGDVEMAKRVMNRVIDLAPEDGGTHV 585

Query: 541 LLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIENE 579
           LLS + + +GNW    E+   MR   L K+   S ++ E
Sbjct: 586 LLSNLYASTGNWSKVIEMKSAMREMRLKKNPAMSWVDVE 624


>gi|357131819|ref|XP_003567531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Brachypodium distachyon]
          Length = 822

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 174/556 (31%), Positives = 296/556 (53%), Gaps = 3/556 (0%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G+  +  +L S + AC+ A      G Q H  A +   + D  + N+LI +Y K S+   
Sbjct: 210 GVRPDRFVLASAVSACS-ALGFLEGGRQTHGYAYRIAVETDASVINALIDLYCKCSRLSL 268

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A +LFD M  R+ +SW ++I  + QN     ++ MF ++   G+       A I++ C  
Sbjct: 269 ARKLFDCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNSCGS 328

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
           +  +  GRQ+HA  I   + E   +V  +L+D+Y+KC H   A  VFE +   + +S+ A
Sbjct: 329 LAAIWQGRQVHAHAI-KANLESDEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAISYNA 387

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           MI G     +    ID+F  M+   +KP+ +T   +L   +    +   K IHG     G
Sbjct: 388 MIEGYSRLGDLAGAIDVFSKMRYCSLKPSPLTFVSLLGVSSSQSAIELSKQIHGLIVKSG 447

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
              D +  ++L+ +Y + +  +  A+ +F     +D+VIW+++I G +Q+    EA+KLF
Sbjct: 448 TSLDLYAGSSLIDVYSKFS-LVEDAKAVFNLMHNRDMVIWNAMIFGLAQNEQGEEAVKLF 506

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
           +++++  + PN  T +A+++  +    + HG   H  I+KAG + D  + NAL++MY+KC
Sbjct: 507 NQLQVSGLAPNEFTFVALVTVASTLVSMFHGQQFHAQIIKAGADSDHHVSNALIDMYAKC 566

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
           G I     +F     +D + W ++IS Y  HG  EEAL +F  M  +GVEP+ +T + +L
Sbjct: 567 GFIKEGRLLFESTLGKDVICWNSMISTYAQHGQAEEALYVFRMMGGTGVEPNYVTFVGVL 626

Query: 442 SACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPS 501
           SAC HAGLV E    F+ +  +  I    EHYA  V+L G+SGK+  A + +  MP++P+
Sbjct: 627 SACAHAGLVDEGLRHFDFMKTKYAIEPGTEHYASVVNLFGRSGKLHAAKEFIERMPIEPA 686

Query: 502 TRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRV 561
             +  SL+SAC + G +E+        + A+P ++    L+S + +  G W  A+++ + 
Sbjct: 687 AAVWRSLLSACHLFGNVEIGRYATEMALLADPADSGPSVLMSNIYASRGLWSDAQKLRQG 746

Query: 562 MRAKGLSKSYGFSRIE 577
           M   G+ K  G+S IE
Sbjct: 747 MDCAGVVKEPGYSWIE 762



 Score =  242 bits (618), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 148/502 (29%), Positives = 270/502 (53%), Gaps = 9/502 (1%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G   N  +L S ++ACA ++    FG Q+H  A++ G D +  +  +LI++YAK    ++
Sbjct: 109 GEAPNEFLLASALRACAQSRA-VSFGQQVHGVAVRIGLDGNVYVGTALINLYAKVGCIDA 167

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A  +FD +P ++ ++W ++I  ++Q G    +LE+F +M L G      +LA  +S CS 
Sbjct: 168 AMLVFDALPVKNPVTWTAVITGYSQIGQGGVALELFGKMGLDGVRPDRFVLASAVSACSA 227

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
           +G LE GRQ H       + E    V  AL+DLY KC    +A ++F+ M  RN VSWT 
Sbjct: 228 LGFLEGGRQTHGYAYRI-AVETDASVINALIDLYCKCSRLSLARKLFDCMENRNLVSWTT 286

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           MI+G + +      + +F  + +EG +P       +L +C  L  +  G+ +H +A    
Sbjct: 287 MIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNSCGSLAAIWQGRQVHAHAIKAN 346

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
            + D ++  +L+ MY +C E L  AR +FE     D + ++++I GYS+ GDL+ A+ +F
Sbjct: 347 LESDEYVKNSLIDMYAKC-EHLTEARAVFEALAEDDAISYNAMIEGYSRLGDLAGAIDVF 405

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
           S+MR   ++P+ +T +++L   + QS +     +H  I+K+G + D+  G++L+++YSK 
Sbjct: 406 SKMRYCSLKPSPLTFVSLLGVSSSQSAIELSKQIHGLIVKSGTSLDLYAGSSLIDVYSKF 465

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
             +  +  +FN M  RD V W  +I G   +  GEEA++LF ++Q SG+ P+  T +A++
Sbjct: 466 SLVEDAKAVFNLMHNRDMVIWNAMIFGLAQNEQGEEAVKLFNQLQVSGLAPNEFTFVALV 525

Query: 442 SACNHAGLVKEAETLFNNVMKEKKIALAIEHYA--CYVDLLGKSGKIEDACKVVSTMPMK 499
           +  +    +   +     ++K    +   +H+     +D+  K G I++  +++    + 
Sbjct: 526 TVASTLVSMFHGQQFHAQIIKAGADS---DHHVSNALIDMYAKCGFIKEG-RLLFESTLG 581

Query: 500 PSTRILSSLVSACRIHGRLEVA 521
                 +S++S    HG+ E A
Sbjct: 582 KDVICWNSMISTYAQHGQAEEA 603



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 130/448 (29%), Positives = 241/448 (53%), Gaps = 5/448 (1%)

Query: 51  HCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFY 110
           H  A+ +G+  D  ++N L+  Y+K  +   A +LFD MP+++ +SW S I+   Q+G  
Sbjct: 34  HARAVVTGALPDLFLANLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQHGCE 93

Query: 111 VRSLEMFREMYLC--GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
             ++ +F        G      LLA  +  C+Q   +  G+Q+H + +  G  + +V+V 
Sbjct: 94  EDAVALFAAFQRASGGEAPNEFLLASALRACAQSRAVSFGQQVHGVAVRIG-LDGNVYVG 152

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
           TAL++LY+K      A+ VF+ + ++N V+WTA+I+G          ++LF  M  +GV+
Sbjct: 153 TALINLYAKVGCIDAAMLVFDALPVKNPVTWTAVITGYSQIGQGGVALELFGKMGLDGVR 212

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
           P R  L   + AC+ L  L  G+  HGYAY    + D  +  AL+ +YC+C+  L  AR 
Sbjct: 213 PDRFVLASAVSACSALGFLEGGRQTHGYAYRIAVETDASVINALIDLYCKCSR-LSLARK 271

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
           +F+  + +++V W+++I GY Q+   +EAM +F ++  E  +P+     +IL+SC   + 
Sbjct: 272 LFDCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNSCGSLAA 331

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
           +  G  VH + +KA L  D  + N+L++MY+KC  +T +  +F  +A  D +S+  +I G
Sbjct: 332 IWQGRQVHAHAIKANLESDEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEG 391

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468
           Y   G    A+ +F +M+   ++P  +T +++L   +    ++ ++ +   ++K    +L
Sbjct: 392 YSRLGDLAGAIDVFSKMRYCSLKPSPLTFVSLLGVSSSQSAIELSKQIHGLIVK-SGTSL 450

Query: 469 AIEHYACYVDLLGKSGKIEDACKVVSTM 496
            +   +  +D+  K   +EDA  V + M
Sbjct: 451 DLYAGSSLIDVYSKFSLVEDAKAVFNLM 478


>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 658

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 167/449 (37%), Positives = 272/449 (60%), Gaps = 8/449 (1%)

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           +I  C++   L  G  +H  +I DGS +   F++T L+++YS+      A +VF++   R
Sbjct: 84  LILSCTRQNSLPQGIDLHRHLIHDGS-DQDPFLATKLINMYSELDSIDNARKVFDKTRKR 142

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC----AELRDLRNG 250
               W A+      +      +DL+R M R GV   R T T VL AC    A +  L NG
Sbjct: 143 TIYVWNALFRALTLAGYGREVLDLYRRMNRIGVPSDRFTYTYVLKACVASEAFVSLLLNG 202

Query: 251 KAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQ 310
           + IHG+    GF+   H+   L+ MY      L+ +R+ F++  VK+VV WS++I  YS+
Sbjct: 203 REIHGHILRHGFEGHVHIMTTLLDMYARFGCVLNASRV-FDQMPVKNVVSWSAMIACYSK 261

Query: 311 SGDLSEAMKLFSRMRLERIE--PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
           +G   EA++LF +M LE  +  PNSVT++++L +C   + L  G  +H YI++ GL+  +
Sbjct: 262 NGKPLEALELFRKMMLENQDLLPNSVTMVSVLQACAALAALEQGKLMHGYILRRGLDSIL 321

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
            + +AL+ +Y++CG++   H++F  M  RD VSW +LIS YG HG+G +A+Q+F EM + 
Sbjct: 322 PVVSALVTVYARCGNLELGHRVFERMEKRDVVSWNSLISSYGIHGFGRKAIQIFKEMIDQ 381

Query: 429 GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIED 488
           G+ P  I+ +++L AC+HAGLV+E + LF ++++  KI  ++EHYAC VDLLG++ ++++
Sbjct: 382 GLSPSPISFVSVLGACSHAGLVEEGKVLFESMVRGHKIFPSVEHYACMVDLLGRANRLDE 441

Query: 489 ACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSE 548
           A K++  M ++P  ++  SL+ +CRIH  +E+AE    +L E EP NA NY LL+ + +E
Sbjct: 442 AAKIIDDMRIEPGPKVWGSLLGSCRIHCNVELAERATSRLFELEPTNAGNYVLLADIYAE 501

Query: 549 SGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +  W   + V  ++ A+GL K  G S IE
Sbjct: 502 AKMWNEVKRVKMLLEARGLQKVPGRSCIE 530



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 111/356 (31%), Positives = 182/356 (51%), Gaps = 26/356 (7%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           Q L +  QE +P+       IL S  +  +  Q     G+ LH   +  GSD DP ++  
Sbjct: 65  QALQVLSQEPNPTQHTYELLIL-SCTRQNSLPQ-----GIDLHRHLIHDGSDQDPFLATK 118

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG---- 124
           LI+MY++    ++A ++FD+   R    WN++    T  G+    L+++R M   G    
Sbjct: 119 LINMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLAGYGREVLDLYRRMNRIGVPSD 178

Query: 125 -----FVLKAELLA-GIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKC 178
                +VLKA + +   +SL      L  GR+IH  ++  G FE  V + T LLD+Y++ 
Sbjct: 179 RFTYTYVLKACVASEAFVSL------LLNGREIHGHILRHG-FEGHVHIMTTLLDMYARF 231

Query: 179 HHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM--QREGVKPTRVTLTI 236
              L A RVF+QM ++N VSW+AMI+    +      ++LFR M  + + + P  VT+  
Sbjct: 232 GCVLNASRVFDQMPVKNVVSWSAMIACYSKNGKPLEALELFRKMMLENQDLLPNSVTMVS 291

Query: 237 VLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK 296
           VL ACA L  L  GK +HGY    G D    + +AL+ +Y  C   L     +FER + +
Sbjct: 292 VLQACAALAALEQGKLMHGYILRRGLDSILPVVSALVTVYARCGN-LELGHRVFERMEKR 350

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHG 352
           DVV W+S+I  Y   G   +A+++F  M  + + P+ ++ +++L +C+    +  G
Sbjct: 351 DVVSWNSLISSYGIHGFGRKAIQIFKEMIDQGLSPSPISFVSVLGACSHAGLVEEG 406



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 156/294 (53%), Gaps = 9/294 (3%)

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
           PT+ T  +++L+C     L  G  +H +    G D D  L+  L++MY E  +++  AR 
Sbjct: 76  PTQHTYELLILSCTRQNSLPQGIDLHRHLIHDGSDQDPFLATKLINMYSEL-DSIDNARK 134

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ-- 346
           +F++T+ + + +W+++ R  + +G   E + L+ RM    +  +  T   +L +C     
Sbjct: 135 VFDKTRKRTIYVWNALFRALTLAGYGREVLDLYRRMNRIGVPSDRFTYTYVLKACVASEA 194

Query: 347 --SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
             S L +G  +H +I++ G    V I   L++MY++ G + ++ ++F++M  ++ VSW+ 
Sbjct: 195 FVSLLLNGREIHGHILRHGFEGHVHIMTTLLDMYARFGCVLNASRVFDQMPVKNVVSWSA 254

Query: 405 LISGYGFHGYGEEALQLFLEM--QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462
           +I+ Y  +G   EAL+LF +M  +   + P+++T++++L AC     +++ + +   +++
Sbjct: 255 MIACYSKNGKPLEALELFRKMMLENQDLLPNSVTMVSVLQACAALAALEQGKLMHGYILR 314

Query: 463 EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG 516
            + +   +   +  V +  + G +E   +V   M  K      +SL+S+  IHG
Sbjct: 315 -RGLDSILPVVSALVTVYARCGNLELGHRVFERME-KRDVVSWNSLISSYGIHG 366



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 138/257 (53%), Gaps = 15/257 (5%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHF---GLQLHCTALKSGSDAD 62
           +  + L LY++ ++  G+ S+      V+KAC  ++        G ++H   L+ G +  
Sbjct: 159 YGREVLDLYRR-MNRIGVPSDRFTYTYVLKACVASEAFVSLLLNGREIHGHILRHGFEGH 217

Query: 63  PVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL 122
             I  +L+ MYA+F    +A ++FD+MP ++ +SW+++I C+++NG  + +LE+FR+M L
Sbjct: 218 VHIMTTLLDMYARFGCVLNASRVFDQMPVKNVVSWSAMIACYSKNGKPLEALELFRKMML 277

Query: 123 CGFVLKAELLAGIISLCS------QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYS 176
                  +LL   +++ S       +  LE G+ +H  ++  G  +  + V +AL+ +Y+
Sbjct: 278 ----ENQDLLPNSVTMVSVLQACAALAALEQGKLMHGYILRRG-LDSILPVVSALVTVYA 332

Query: 177 KCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTI 236
           +C +  +  RVFE+M  R+ VSW ++IS           I +F+ M  +G+ P+ ++   
Sbjct: 333 RCGNLELGHRVFERMEKRDVVSWNSLISSYGIHGFGRKAIQIFKEMIDQGLSPSPISFVS 392

Query: 237 VLLACAELRDLRNGKAI 253
           VL AC+    +  GK +
Sbjct: 393 VLGACSHAGLVEEGKVL 409



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 120/250 (48%), Gaps = 15/250 (6%)

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSV--TLLAILSSCTRQSFLSHGLGVHCYI 359
           + +I+   + G+L++A+++ S+      EPN    T   ++ SCTRQ+ L  G+ +H ++
Sbjct: 51  NPLIQSLCKQGNLNQALQVLSQ------EPNPTQHTYELLILSCTRQNSLPQGIDLHRHL 104

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEAL 419
           +  G + D  +   L+NMYS+  SI ++ ++F++   R    W  L       GYG E L
Sbjct: 105 IHDGSDQDPFLATKLINMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLAGYGREVL 164

Query: 420 QLFLEMQESGVEPDAITVLAILSAC----NHAGLVKEAETLFNNVMKEKKIALAIEHYAC 475
            L+  M   GV  D  T   +L AC        L+     +  ++++       +     
Sbjct: 165 DLYRRMNRIGVPSDRFTYTYVLKACVASEAFVSLLLNGREIHGHILRH-GFEGHVHIMTT 223

Query: 476 YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGR-LEVAEMLAHQLIEAEPE 534
            +D+  + G + +A +V   MP+K +    S++++    +G+ LE  E+    ++E +  
Sbjct: 224 LLDMYARFGCVLNASRVFDQMPVK-NVVSWSAMIACYSKNGKPLEALELFRKMMLENQDL 282

Query: 535 NAANYTLLSM 544
              + T++S+
Sbjct: 283 LPNSVTMVSV 292



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 98/200 (49%), Gaps = 3/200 (1%)

Query: 9   QTLHLY-KQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           + L L+ K  L    L  N+  + SV++ACA     +  G  +H   L+ G D+   + +
Sbjct: 267 EALELFRKMMLENQDLLPNSVTMVSVLQACAALAALEQ-GKLMHGYILRRGLDSILPVVS 325

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +L+++YA+    E  +++F+ M  RD +SWNS+I+ +  +GF  +++++F+EM   G   
Sbjct: 326 ALVTVYARCGNLELGHRVFERMEKRDVVSWNSLISSYGIHGFGRKAIQIFKEMIDQGLSP 385

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
                  ++  CS  G +E G+ +   ++       SV     ++DL  + +    A ++
Sbjct: 386 SPISFVSVLGACSHAGLVEEGKVLFESMVRGHKIFPSVEHYACMVDLLGRANRLDEAAKI 445

Query: 188 FEQMVIR-NEVSWTAMISGC 206
            + M I      W +++  C
Sbjct: 446 IDDMRIEPGPKVWGSLLGSC 465


>gi|449523219|ref|XP_004168621.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 755

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 166/539 (30%), Positives = 304/539 (56%), Gaps = 15/539 (2%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           +H   +K+G   D  +   L+++Y+K    ESA+++FD +P R+  +W +++  + QN  
Sbjct: 86  IHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHKVFDNLPRRNVNAWTTLLTGYVQNSH 145

Query: 110 YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVST 169
            + +L++F +M   G       L  +++ CS +  +E G+Q+HA +I     +    +  
Sbjct: 146 PLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAYLI-KYHIDFDTSIGN 204

Query: 170 ALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKP 229
           +L   YSK      A++ F+ +  ++ +SWT++IS C D+      +  F  M  +G+KP
Sbjct: 205 SLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMDMLSDGMKP 264

Query: 230 TRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARII 289
              TLT VL AC  +  L  G  IH  +   G+     +  ++M++Y +C   L  A+ +
Sbjct: 265 NEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIKNSIMYLYLKCG-WLIEAQKL 323

Query: 290 FERTKVKDVVIWSSIIRGYSQSGDLSE-----------AMKLFSRMRLERIEPNSVTLLA 338
           FE  +  ++V W+++I G+++  DL+E           A+ +F ++    ++P+  T  +
Sbjct: 324 FEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLYRSGMKPDLFTFSS 383

Query: 339 ILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARD 398
           +LS C+    L  G  +H  I+K+G+  DV +G AL++MY+KCGSI  + + F EM +R 
Sbjct: 384 VLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCGSIDKASKAFLEMPSRT 443

Query: 399 FVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFN 458
            +SWT++I+G+  HG  ++ALQLF +M+  G++P+ +T + +LSAC+HAGL  EA   F 
Sbjct: 444 MISWTSMITGFARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACSHAGLADEALYYFE 503

Query: 459 NVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRL 518
            + K+  I   ++H+AC +D+  + G++E+A  VV  M  +P+  I S L++ CR HG+ 
Sbjct: 504 LMQKQYNIKPVMDHFACLIDMYLRLGRVEEAFDVVHKMNFEPNETIWSMLIAGCRSHGKS 563

Query: 519 EVAEMLAHQLIEAEPENAANY-TLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
           ++    A QL++ +P++   Y +LL+M  S +G W    +V ++M+ + + K   +S I
Sbjct: 564 DLGFYAAEQLLKLKPKDVETYVSLLNMHIS-AGRWKDVSKVRKLMKEEKVGKLKDWSWI 621



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 148/484 (30%), Positives = 238/484 (49%), Gaps = 40/484 (8%)

Query: 14  YKQELHP------------SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           Y Q  HP            +G Y +   L  V+ AC+  Q+ + FG Q+H   +K   D 
Sbjct: 140 YVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIE-FGKQVHAYLIKYHIDF 198

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D  I NSL S Y+KF + E A + F  +  +D ISW S+I+    NG   RSL  F +M 
Sbjct: 199 DTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMDML 258

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
             G       L  ++S C  +  L+LG QIH+L I  G +  S+ +  +++ LY KC  W
Sbjct: 259 SDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLG-YGSSILIKNSIMYLYLKC-GW 316

Query: 182 LI-ALRVFEQMVIRNEVSWTAMISG---CIDSQNYD--------TGIDLFRAMQREGVKP 229
           LI A ++FE M   N V+W AMI+G    +D    D        T + +F+ + R G+KP
Sbjct: 317 LIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLYRSGMKP 376

Query: 230 TRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARII 289
              T + VL  C+ L  L  G+ IHG     G   D  +  AL+ MY +C  ++  A   
Sbjct: 377 DLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCG-SIDKASKA 435

Query: 290 FERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFL 349
           F     + ++ W+S+I G+++ G   +A++LF  MRL  I+PN VT + +LS+C+     
Sbjct: 436 FLEMPSRTMISWTSMITGFARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACSHAGLA 495

Query: 350 SHGLGVHCYIMKAGLNFDVSIGN--ALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLI 406
              L  +  +M+   N    + +   L++MY + G +  +  + ++M    +   W+ LI
Sbjct: 496 DEAL-YYFELMQKQYNIKPVMDHFACLIDMYLRLGRVEEAFDVVHKMNFEPNETIWSMLI 554

Query: 407 SGYGFHG---YGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKE 463
           +G   HG    G  A +  L+++   VE    T +++L+    AG  K+   +   +MKE
Sbjct: 555 AGCRSHGKSDLGFYAAEQLLKLKPKDVE----TYVSLLNMHISAGRWKDVSKV-RKLMKE 609

Query: 464 KKIA 467
           +K+ 
Sbjct: 610 EKVG 613



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 113/208 (54%), Gaps = 1/208 (0%)

Query: 237 VLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK 296
           +L  C +       + IHG+    GF  D  +   L+++Y +C   +  A  +F+    +
Sbjct: 70  LLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCG-VMESAHKVFDNLPRR 128

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVH 356
           +V  W++++ GY Q+     A++LF +M      P++ TL  +L++C+    +  G  VH
Sbjct: 129 NVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVH 188

Query: 357 CYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGE 416
            Y++K  ++FD SIGN+L + YSK   +  + + F  +  +D +SWT++IS    +G   
Sbjct: 189 AYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAA 248

Query: 417 EALQLFLEMQESGVEPDAITVLAILSAC 444
            +L  F++M   G++P+  T+ ++LSAC
Sbjct: 249 RSLSFFMDMLSDGMKPNEYTLTSVLSAC 276



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 111/218 (50%), Gaps = 35/218 (16%)

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
           RIE  S     +L  C  ++  +    +H +I+K G + D+ +   L+N+YSKCG + S+
Sbjct: 61  RIE--SSYYFPLLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESA 118

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN-- 445
           H++F+ +  R+  +WTTL++GY  + +   ALQLF++M E+G  P   T+  +L+AC+  
Sbjct: 119 HKVFDNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSL 178

Query: 446 ---------HAGLVK---EAETLFNNVM-----KEKKIALAIEHYACY--VDLLGKSGKI 486
                    HA L+K   + +T   N +     K +++  AI+ +      D++  +  I
Sbjct: 179 QSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVI 238

Query: 487 EDAC---KVVSTMP---------MKPSTRILSSLVSAC 512
              C   +   ++          MKP+   L+S++SAC
Sbjct: 239 SSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSAC 276


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 176/515 (34%), Positives = 293/515 (56%), Gaps = 8/515 (1%)

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           N+LIS YAK S  E A+QLFDEMP  D++S+N++I  + + G    + ++F EM      
Sbjct: 78  NTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLD 137

Query: 127 LKAELLAGIISLCS-QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
           +    L+GII+ C   +G   L RQ+HAL +V G  +  V V  AL+  YSK      A 
Sbjct: 138 MDGFTLSGIITACGINVG---LIRQLHALSVVTG-LDSYVSVGNALITSYSKNGFLKEAR 193

Query: 186 RVFEQMV-IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
           R+F  +   R+EVSW +M+   +  +     ++L+  M   G+     TL  VL A   +
Sbjct: 194 RIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNV 253

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
           +DL  G   H      G+  + H+ + L+ +Y +C   +   R +F+     D+V+W+++
Sbjct: 254 QDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTM 313

Query: 305 IRGYSQSGDLS-EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           I GYS   DLS EA++ F +++     P+  +L+ ++S+C+  S  S G  VH   +K  
Sbjct: 314 ISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLD 373

Query: 364 LNFD-VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
           +  + +S+ NAL+ MYSKCG++  +  +F+ M   + VS+ ++I+GY  HG G ++L LF
Sbjct: 374 IPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLF 433

Query: 423 LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGK 482
             M E    P  IT +++L+AC H G V++ +  FN + ++  I     H++C +DLLG+
Sbjct: 434 QRMLEMDFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGR 493

Query: 483 SGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLL 542
           +GK+ +A +++ T+P  P     S+L+ ACRIHG +E+A   A++L++ +P NAA Y +L
Sbjct: 494 AGKLSEAERLIETIPFDPGFFXWSALLGACRIHGNVELAIKAANRLLQLDPLNAAPYVML 553

Query: 543 SMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           + + S++G    A  V ++MR +G+ K  G S IE
Sbjct: 554 ANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIE 588


>gi|449463559|ref|XP_004149501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
 gi|449511944|ref|XP_004164096.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 566

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 171/524 (32%), Positives = 288/524 (54%), Gaps = 15/524 (2%)

Query: 63  PVISNSLISMYAKFSKPESAYQLFDEMPY--RDTISWNSIINCFTQNGFYVRSLEMFREM 120
           P    SLI+MY++ ++ E A  +F + PY  R+  ++N+II  F  NG      + ++ M
Sbjct: 10  PSSITSLINMYSRCNQMEEAVLVFRD-PYHERNVFAYNAIIAGFVANGLAADGFQFYKRM 68

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
              G +        ++  C +  E+   R+IH  +   G  EL+VFV +AL++ Y K   
Sbjct: 69  RSVGVMPDKFTFPCVVRACCEFMEV---RKIHGCLFKMG-LELNVFVGSALVNTYLKVDG 124

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
              A +VFE++  R+ V W AMI+G     + +  + +F+ M  EG+  +R T T +L  
Sbjct: 125 TEDAEKVFEELPERDVVLWNAMINGYTKIGHLNKAVVVFKRMGEEGISLSRFTTTSILSI 184

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
              + D+ NG+AIHG     G+     +S AL+ MY +C      A +IFE    KD+  
Sbjct: 185 LTSMGDINNGRAIHGIVTKMGYSSCVAVSNALIDMYGKCKHT-EDALMIFEMINEKDLFS 243

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           W+SII  + Q  D    ++LF +M   R+ P+ +T+ A+L +C+  + L HG  +H Y++
Sbjct: 244 WNSIISAHEQCDDHDGTLRLFGKMLGSRVLPDVITITAVLPACSHLAALMHGREIHGYMI 303

Query: 361 KAGLNF-----DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYG 415
             GL       DV + NA+M+MY+KCG + ++  IF+ M  +D  SW  +I GY  HGYG
Sbjct: 304 VNGLGKNENGDDVLLNNAIMDMYAKCGCMKNADIIFDLMRNKDVASWNIMIMGYAMHGYG 363

Query: 416 EEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC 475
            EAL +F  M E+ ++PD +T + +LSAC+HAG V +  +    +  E  +   IEHY C
Sbjct: 364 TEALDMFHRMCEAQIKPDVVTFVGVLSACSHAGFVHQGRSFLTRMELEFGVIPTIEHYTC 423

Query: 476 YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPEN 535
            +D+LG++G + +A  +   +P++ +  +  +L+ ACR+HG  E+  ++  ++ + EP++
Sbjct: 424 IIDMLGRAGHLGEAYDLAQRIPLEDNLILWMALLGACRLHGNAELGNVVGEKITQLEPKH 483

Query: 536 --AANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
             + +Y L+S +    G +  A EV R M+ + + K+ G S IE
Sbjct: 484 CGSGSYILMSSLYGVVGRYEEALEVRRTMKEQNVKKTPGCSWIE 527



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 144/493 (29%), Positives = 236/493 (47%), Gaps = 54/493 (10%)

Query: 14  YKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMY 73
           + + +   G+  +    P V++AC      +    ++H    K G + +  + ++L++ Y
Sbjct: 64  FYKRMRSVGVMPDKFTFPCVVRACCEFMEVR----KIHGCLFKMGLELNVFVGSALVNTY 119

Query: 74  AKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLA 133
            K    E A ++F+E+P RD + WN++IN +T+ G   +++ +F+ M   G  L      
Sbjct: 120 LKVDGTEDAEKVFEELPERDVVLWNAMINGYTKIGHLNKAVVVFKRMGEEGISLSRFTTT 179

Query: 134 GIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI 193
            I+S+ + +G++  GR IH +V   G +   V VS AL+D+Y KC H   AL +FE +  
Sbjct: 180 SILSILTSMGDINNGRAIHGIVTKMG-YSSCVAVSNALIDMYGKCKHTEDALMIFEMINE 238

Query: 194 RNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAI 253
           ++  SW ++IS      ++D  + LF  M    V P  +T+T VL AC+ L  L +G+ I
Sbjct: 239 KDLFSWNSIISAHEQCDDHDGTLRLFGKMLGSRVLPDVITITAVLPACSHLAALMHGREI 298

Query: 254 HGYAYCCGFDFDHH-----LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
           HGY    G   + +     L+ A+M MY +C   +  A IIF+  + KDV  W+ +I GY
Sbjct: 299 HGYMIVNGLGKNENGDDVLLNNAIMDMYAKCG-CMKNADIIFDLMRNKDVASWNIMIMGY 357

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
           +  G  +EA+ +F RM   +I+P+ VT + +LS+C+   F+  G     ++ +  L F V
Sbjct: 358 AMHGYGTEALDMFHRMCEAQIKPDVVTFVGVLSACSHAGFVHQG---RSFLTRMELEFGV 414

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
                           T  H             +T +I   G  G+  EA  L    Q  
Sbjct: 415 --------------IPTIEH-------------YTCIIDMLGRAGHLGEAYDL---AQRI 444

Query: 429 GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEH-----YACYVDLLGKS 483
            +E + I  +A+L AC   G    AE    NV+ EK   L  +H     Y     L G  
Sbjct: 445 PLEDNLILWMALLGACRLHG---NAE--LGNVVGEKITQLEPKHCGSGSYILMSSLYGVV 499

Query: 484 GKIEDACKVVSTM 496
           G+ E+A +V  TM
Sbjct: 500 GRYEEALEVRRTM 512


>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 182/570 (31%), Positives = 305/570 (53%), Gaps = 6/570 (1%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           + L L+K  L   G+  + +   SV ++CA     +  G QLH  ALKS    D +I  +
Sbjct: 222 EGLKLFKDML-KVGMGVSQSTYASVFRSCAGLSAFK-LGTQLHGHALKSDFAYDSIIGTA 279

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
            + MYAK  +   A+++F+ +P     S+N+II  + +    +++LE+F+ +        
Sbjct: 280 TLDMYAKCDRMSDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFD 339

Query: 129 AELLAGIISLCSQI-GELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
              L+G ++ CS I G LE G Q+H L +  G    ++ V+  +LD+Y KC   + A  +
Sbjct: 340 EISLSGALTACSVIKGHLE-GIQLHGLAVKCG-LGFNICVANTILDMYGKCGALVEACTI 397

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F+ M  R+ VSW A+I+    ++     + LF +M R  ++P   T   V+ ACA  + L
Sbjct: 398 FDDMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQAL 457

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
             G  IHG     G   D  + +AL+ MY +C   L  A  I +R + K  V W+SII G
Sbjct: 458 NYGMEIHGRIVKSGMGLDWFVGSALVDMYGKCG-MLMEAEKIHDRLEEKTTVSWNSIISG 516

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
           +S       A + FS+M    + P++ T   +L  C   + +  G  +H  I+K  L+ D
Sbjct: 517 FSSQKQSENAQRYFSQMLEMGVIPDNFTYATVLDVCANMATIELGKQIHAQILKLNLHSD 576

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
           V I + L++MYSKCG++  S  +F +   RD+V+W+ +I  Y +HG+GE+A++LF EMQ 
Sbjct: 577 VYIASTLVDMYSKCGNMQDSRLMFEKTPKRDYVTWSAMICAYAYHGHGEQAIKLFEEMQL 636

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487
             V+P+    +++L AC H G V +    F  +     +   +EHY+C VDLLG+S ++ 
Sbjct: 637 LNVKPNHTIFISVLRACAHMGYVDKGLHYFQIMQSHYGLDPHMEHYSCMVDLLGRSDQVN 696

Query: 488 DACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCS 547
           +A K++ +M  +    I  +L+S C++ G +EVAE   + L++ +P++++ Y LL+ V +
Sbjct: 697 EALKLIESMHFEADDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQDSSAYVLLANVYA 756

Query: 548 ESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
             G W    ++  +M+   L K  G S IE
Sbjct: 757 NVGMWGEVAKIRSIMKNCKLKKEPGCSWIE 786



 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 147/527 (27%), Positives = 273/527 (51%), Gaps = 12/527 (2%)

Query: 28  AILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFD 87
           A    V+KAC+  + +   GLQ+HC A++ G + D V  ++L+ MY+K  K + A+++F 
Sbjct: 139 ATFSVVLKACSGIEDYG-LGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDGAFRIFR 197

Query: 88  EMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELEL 147
           EMP R+ + W+++I  + QN  ++  L++F++M   G  +     A +   C+ +   +L
Sbjct: 198 EMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKL 257

Query: 148 GRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCI 207
           G Q+H   +    F     + TA LD+Y+KC     A +VF  +      S+ A+I G  
Sbjct: 258 GTQLHGHAL-KSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPRQSYNAIIVGYA 316

Query: 208 DSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
                   +++F+++QR  +    ++L+  L AC+ ++    G  +HG A  CG  F+  
Sbjct: 317 RQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQLHGLAVKCGLGFNIC 376

Query: 268 LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
           ++  ++ MY +C  AL  A  IF+  + +D V W++II  + Q+ ++ + + LF  M   
Sbjct: 377 VANTILDMYGKCG-ALVEACTIFDDMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRS 435

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
            +EP+  T  +++ +C  Q  L++G+ +H  I+K+G+  D  +G+AL++MY KCG +  +
Sbjct: 436 TMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGLDWFVGSALVDMYGKCGMLMEA 495

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHA 447
            +I + +  +  VSW ++ISG+      E A + F +M E GV PD  T   +L  C + 
Sbjct: 496 EKIHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFTYATVLDVCANM 555

Query: 448 GLVKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDACKVVSTMPMKPSTRIL 505
             ++  + +   ++   K+ L  + Y  +  VD+  K G ++D+  +    P K      
Sbjct: 556 ATIELGKQIHAQIL---KLNLHSDVYIASTLVDMYSKCGNMQDSRLMFEKTP-KRDYVTW 611

Query: 506 SSLVSACRIHGRLEVAEMLAH--QLIEAEPENAANYTLLSMVCSESG 550
           S+++ A   HG  E A  L    QL+  +P +    ++L   C+  G
Sbjct: 612 SAMICAYAYHGHGEQAIKLFEEMQLLNVKPNHTIFISVLR-ACAHMG 657



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 140/490 (28%), Positives = 252/490 (51%), Gaps = 11/490 (2%)

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D +  N++I  YA+      A  LFD MP RD +SWNS+++C+  NG   +S+E+F  M 
Sbjct: 71  DVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMR 130

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
                      + ++  CS I +  LG Q+H L I  G FE  V   +AL+D+YSKC   
Sbjct: 131 SLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMG-FENDVVTGSALVDMYSKCKKL 189

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             A R+F +M  RN V W+A+I+G + +  +  G+ LF+ M + G+  ++ T   V  +C
Sbjct: 190 DGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSC 249

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A L   + G  +HG+A    F +D  +  A + MY +C + +  A  +F          +
Sbjct: 250 AGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKC-DRMSDAWKVFNTLPNPPRQSY 308

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           ++II GY++     +A+++F  ++   +  + ++L   L++C+       G+ +H   +K
Sbjct: 309 NAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQLHGLAVK 368

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
            GL F++ + N +++MY KCG++  +  IF++M  RD VSW  +I+ +  +    + L L
Sbjct: 369 CGLGFNICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNEEIVKTLSL 428

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDL 479
           F+ M  S +EPD  T  +++ AC     +     +   ++K     + ++ +  +  VD+
Sbjct: 429 FVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKS---GMGLDWFVGSALVDM 485

Query: 480 LGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE--PENAA 537
            GK G + +A K+   +  K +T   +S++S      + E A+    Q++E    P+N  
Sbjct: 486 YGKCGMLMEAEKIHDRLEEK-TTVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFT 544

Query: 538 NYTLLSMVCS 547
             T+L  VC+
Sbjct: 545 YATVLD-VCA 553



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 107/399 (26%), Positives = 184/399 (46%), Gaps = 34/399 (8%)

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           I+  CS +  L  G+Q HA +IV  SF  +++V+  L+  Y K  +   A +VF++M  R
Sbjct: 12  ILQKCSNLKALNPGKQAHAQMIVT-SFVPTIYVANCLVQFYCKSSNMNYAFKVFDRMPHR 70

Query: 195 NEVSWTAMISGCIDSQN-------YDT------------------------GIDLFRAMQ 223
           + +SW  MI G  +  N       +DT                         I++F  M+
Sbjct: 71  DVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMR 130

Query: 224 REGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEAL 283
              +     T ++VL AC+ + D   G  +H  A   GF+ D    +AL+ MY +C + L
Sbjct: 131 SLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKK-L 189

Query: 284 HPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC 343
             A  IF     +++V WS++I GY Q+    E +KLF  M    +  +  T  ++  SC
Sbjct: 190 DGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSC 249

Query: 344 TRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWT 403
              S    G  +H + +K+   +D  IG A ++MY+KC  ++ + ++FN +      S+ 
Sbjct: 250 AGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPRQSYN 309

Query: 404 TLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKE 463
            +I GY     G +AL++F  +Q + +  D I++   L+AC+      E   L    +K 
Sbjct: 310 AIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQLHGLAVK- 368

Query: 464 KKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPST 502
             +   I      +D+ GK G + +AC +   M  + + 
Sbjct: 369 CGLGFNICVANTILDMYGKCGALVEACTIFDDMERRDAV 407



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 10/155 (6%)

Query: 335 TLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEM 394
           T   IL  C+    L+ G   H  ++       + + N L+  Y K  ++  + ++F+ M
Sbjct: 8   TFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFDRM 67

Query: 395 AARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAE 454
             RD +SW T+I GY   G    A  LF  M E     D ++  ++LS   H G+ +++ 
Sbjct: 68  PHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPER----DVVSWNSLLSCYLHNGVNRKSI 123

Query: 455 TLFNNVMKEKKIALAIEH-YACYVDLLGKSGKIED 488
            +F  +      +L I H YA +  +L     IED
Sbjct: 124 EIFVRMR-----SLKIPHDYATFSVVLKACSGIED 153


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 180/563 (31%), Positives = 313/563 (55%), Gaps = 12/563 (2%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGS-DADPVISNSLISMYAKFSKP- 79
           GL  N     +VI+AC+ +      G       +K+G  ++D  +  SLI M+ K     
Sbjct: 161 GLVPNDYCYTAVIRACSNSD-FVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSF 219

Query: 80  ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLC 139
           E+AY++FD+M   + ++W  +I    Q GF   ++  F +M L GF      L+ + S C
Sbjct: 220 ENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSAC 279

Query: 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH---HWLIALRVFEQMVIRNE 196
           +++  L LG+Q+H+  I  G   L   V  +L+D+Y+KC          +VF++M   + 
Sbjct: 280 AELENLSLGKQLHSWAIRSG---LVDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSV 336

Query: 197 VSWTAMISGCIDSQNYDT-GIDLFRAMQREG-VKPTRVTLTIVLLACAELRDLRNGKAIH 254
           +SWTA+I+G + + N  T  I+LF  M  +G V+P   T +    AC  L D R GK + 
Sbjct: 337 MSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVL 396

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
           G A+  G   +  ++ +++ M+ + ++ +  A+  FE    K++V +++ + G  ++ + 
Sbjct: 397 GQAFKRGLASNSSVANSVISMFVK-SDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNF 455

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
            +A KL S +    +  ++ T  ++LS       +  G  +H  ++K GL+ +  + NAL
Sbjct: 456 EQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNAL 515

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           ++MYSKCGSI ++ ++FN M  R+ +SWT++I+G+  HG+    L+ F +M E GV+P+ 
Sbjct: 516 ISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNE 575

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS 494
           +T +AILSAC+H GLV E    FN++ ++ KI   +EHYAC VDLL ++G + DA + ++
Sbjct: 576 VTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFIN 635

Query: 495 TMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLG 554
           TMP +    +  + + ACR+H   E+ ++ A +++E +P   A Y  LS + + +G W  
Sbjct: 636 TMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEE 695

Query: 555 AEEVWRVMRAKGLSKSYGFSRIE 577
           + E+ R M+ + L K  G S IE
Sbjct: 696 STEMRRKMKERNLVKEGGCSWIE 718



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 145/544 (26%), Positives = 260/544 (47%), Gaps = 17/544 (3%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           ++    S++K+C  A+  +  G  +H   ++   + D V+ NSLIS+Y+K      A  +
Sbjct: 61  DSVTFSSLLKSCIRARDFR-LGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDV 119

Query: 86  FDEMPY---RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQI 142
           F+ M     RD +SW++++ C+  NG  + ++++F E    G V        +I  CS  
Sbjct: 120 FETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNS 179

Query: 143 GELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH-WLIALRVFEQMVIRNEVSWTA 201
             + +GR     ++  G FE  V V  +L+D++ K  + +  A +VF++M   N V+WT 
Sbjct: 180 DFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTL 239

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           MI+ C+        I  F  M   G +  + TL+ V  ACAEL +L  GK +H +A   G
Sbjct: 240 MITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSG 299

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL-SEAMKL 320
              D   S   M+  C    ++   R +F+R +   V+ W+++I GY ++ +L +EA+ L
Sbjct: 300 LVDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINL 359

Query: 321 FSRMRLE-RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           FS M  +  +EPN  T  +   +C   S    G  V     K GL  + S+ N++++M+ 
Sbjct: 360 FSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFV 419

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           K   +  + + F  ++ ++ VS+ T + G   +   E+A +L  E+ E  +   A T  +
Sbjct: 420 KSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFAS 479

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC--YVDLLGKSGKIEDACKVVSTMP 497
           +LS   + G +++ E + + V+   K+ L+     C   + +  K G I+ A +V + M 
Sbjct: 480 LLSGVANVGSIRKGEQIHSQVV---KLGLSCNQPVCNALISMYSKCGSIDTASRVFNFME 536

Query: 498 MKPSTRILSSLVSACRIHG-RLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAE 556
            + +    +S+++    HG  + V E     + E    N   Y  +   CS  G      
Sbjct: 537 NR-NVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVG---LVS 592

Query: 557 EVWR 560
           E WR
Sbjct: 593 EGWR 596



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 123/229 (53%), Gaps = 7/229 (3%)

Query: 222 MQREGVKP-TRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECT 280
           M R+G++P   VT + +L +C   RD R GK +H        + D  L  +L+ +Y +  
Sbjct: 52  MARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSG 111

Query: 281 EALHPARIIFE---RTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLL 337
           ++   A  +FE   R   +DVV WS+++  Y  +G   +A+K+F       + PN     
Sbjct: 112 DSAK-AEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYT 170

Query: 338 AILSSCTRQSFLSHGLGVHCYIMKAG-LNFDVSIGNALMNMYSKC-GSITSSHQIFNEMA 395
           A++ +C+   F+  G     ++MK G    DV +G +L++M+ K   S  +++++F++M+
Sbjct: 171 AVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMS 230

Query: 396 ARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
             + V+WT +I+     G+  EA++ FL+M  SG E D  T+ ++ SAC
Sbjct: 231 ELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSAC 279



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 92/192 (47%), Gaps = 5/192 (2%)

Query: 310 QSGDLSEAMKLFSRMRLERIEP-NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
            +GDL  A+     M  + I P +SVT  ++L SC R      G  VH  +++  +  D 
Sbjct: 38  NAGDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDS 97

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEM---AARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            + N+L+++YSK G    +  +F  M     RD VSW+ +++ YG +G   +A+++F+E 
Sbjct: 98  VLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEF 157

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS-G 484
            E G+ P+     A++ AC+++  V         +MK       +      +D+  K   
Sbjct: 158 LELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGEN 217

Query: 485 KIEDACKVVSTM 496
             E+A KV   M
Sbjct: 218 SFENAYKVFDKM 229


>gi|297848206|ref|XP_002891984.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297337826|gb|EFH68243.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 611

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 169/519 (32%), Positives = 283/519 (54%), Gaps = 6/519 (1%)

Query: 64  VISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC 123
           +++ +LI  Y +    E A  LFDEMP RD ++W ++I  +  + +   + E F EM+  
Sbjct: 46  ILATNLIVSYFEKGLVEEARSLFDEMPERDVVAWTAMITGYASSNYNSCAWECFHEMFKQ 105

Query: 124 GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL- 182
           G       L+ ++  C  +  L  G  +H +V+  G  E S++V  AL+++Y+ C   + 
Sbjct: 106 GRSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLG-MEGSLYVDNALMNMYATCSVTME 164

Query: 183 IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
            A  +F  + ++N+V+WT +I+G     +   G+ +++ M  E    T   +TI + A A
Sbjct: 165 AAFLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENADVTPYCITIAVRASA 224

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
            +  +  GK IH      GF  +  +  +++  YC C   L  A+  F   + KD++ W+
Sbjct: 225 SIDSVTTGKQIHASVVKRGFQSNLPVMNSILDFYCRCG-YLSEAKRYFHEMEDKDLITWN 283

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
           ++I    +S D SEA+ +F R   +   PN  T  +++++C   + L+ G  +H  I + 
Sbjct: 284 TLISELERS-DSSEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIYRR 342

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFHGYGEEALQL 421
           G N +V + NAL++MY+KCG I  S ++F E+  R + VSWT+++ GYG HGYG EA++L
Sbjct: 343 GFNKNVELANALIDMYAKCGDIPDSERVFGEIEERRNLVSWTSMMIGYGSHGYGAEAVEL 402

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
           F +M  SG+ PD I  +A+LSAC HAGLV++    FN +  E  I    + Y C VDLLG
Sbjct: 403 FDKMVSSGIRPDRIVFMAVLSACRHAGLVEKGLKYFNVMESEYGINPDRDIYNCVVDLLG 462

Query: 482 KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLE-VAEMLAHQLIEAEPENAANYT 540
           ++GKI +A ++V  MP KP      +++ AC+ H     ++ + A +++E +P     Y 
Sbjct: 463 RAGKIGEAYELVERMPFKPDESTWGAILGACKAHKHTGLISRLAAKKVMELKPRMVGTYV 522

Query: 541 LLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIENE 579
           +LS + +  G W+    V ++MR  G  K  G S IE E
Sbjct: 523 MLSYIYAAEGKWVEFARVRKMMRMMGNKKEAGMSWIEVE 561



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/401 (26%), Positives = 208/401 (51%), Gaps = 8/401 (1%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
            E+   G   N   L SV+K+C   +    +G  +H   +K G +    + N+L++MYA 
Sbjct: 100 HEMFKQGRSPNEFTLSSVLKSCRNMKVLA-YGALVHGVVVKLGMEGSLYVDNALMNMYAT 158

Query: 76  FSKP-ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAG 134
            S   E+A+ +F ++  ++ ++W ++I  FT  G  +  L+M+++M L    +    +  
Sbjct: 159 CSVTMEAAFLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENADVTPYCITI 218

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
            +   + I  +  G+QIHA V+  G F+ ++ V  ++LD Y +C +   A R F +M  +
Sbjct: 219 AVRASASIDSVTTGKQIHASVVKRG-FQSNLPVMNSILDFYCRCGYLSEAKRYFHEMEDK 277

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
           + ++W  +IS  ++  +    + +F+  + +G  P   T T ++ ACA +  L  G+ +H
Sbjct: 278 DLITWNTLISE-LERSDSSEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLH 336

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
           G  Y  GF+ +  L+ AL+ MY +C +     R+  E  + +++V W+S++ GY   G  
Sbjct: 337 GRIYRRGFNKNVELANALIDMYAKCGDIPDSERVFGEIEERRNLVSWTSMMIGYGSHGYG 396

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA--GLNFDVSIGN 372
           +EA++LF +M    I P+ +  +A+LS+C     +  GL  +  +M++  G+N D  I N
Sbjct: 397 AEAVELFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKGLK-YFNVMESEYGINPDRDIYN 455

Query: 373 ALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFH 412
            ++++  + G I  ++++   M  + D  +W  ++     H
Sbjct: 456 CVVDLLGRAGKIGEAYELVERMPFKPDESTWGAILGACKAH 496


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 184/596 (30%), Positives = 312/596 (52%), Gaps = 52/596 (8%)

Query: 19  HPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADP----VISNSLISMYA 74
           HPS  Y    +L       AYA +    GL  H   +    DA P    V  NSL+S  A
Sbjct: 42  HPSPTYLLNTLL------TAYASS----GLLPHARRV---FDAMPGRNLVTGNSLLSALA 88

Query: 75  KFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL--CGFVLKAELL 132
           +        +LF  +P RD +S+N+++  F++ G + R+   +  +     G       +
Sbjct: 89  RAGLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITM 148

Query: 133 AGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM- 191
           +G++ + S +G+  LGRQ+H  ++  G F    F  + L+D+Y+K      A RVF++M 
Sbjct: 149 SGVVMVASALGDRALGRQVHCQILRLG-FGAYAFTGSPLVDMYAKVGPIGDARRVFDEME 207

Query: 192 ---VI---------------------------RNEVSWTAMISGCIDSQNYDTGIDLFRA 221
              V+                           R+ ++WT M++G   +      +D+FR 
Sbjct: 208 GKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRR 267

Query: 222 MQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTE 281
           M+ EGV   + T   +L AC  L  L  GK IH Y     ++ +  + +AL+ MY +C  
Sbjct: 268 MRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKC-R 326

Query: 282 ALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILS 341
           ++  A  +F R   K+++ W+++I GY Q+G   EA+++FS M+ + I+P+  TL +++S
Sbjct: 327 SVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVIS 386

Query: 342 SCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS 401
           SC   + L  G   HC  + +GL   V++ NAL+ +Y KCGSI  +H++F+EM+  D VS
Sbjct: 387 SCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVS 446

Query: 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVM 461
           WT L+ GY   G  +E + LF +M   GV+PD +T + +LSAC+ +GLV +  + F+++ 
Sbjct: 447 WTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQ 506

Query: 462 KEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA 521
           ++  I    +HY C +DL  +SG ++ A + +  MP  P     ++L+SACR+ G +E+ 
Sbjct: 507 QDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATLLSACRLRGDMEIG 566

Query: 522 EMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +  A  L++ +P+N A+Y LL  + +  G W    ++ R MR + + K  G S I+
Sbjct: 567 KWAAENLLKLDPQNPASYVLLCSMHASKGEWNDVAKLRRGMRDRQVKKEPGCSWIK 622



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 104/208 (50%), Gaps = 19/208 (9%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E+ + ++  E+   G+  +   L SVI +CA   + +  G Q HC AL SG      +SN
Sbjct: 360 EEAVRVF-SEMQRDGIKPDDFTLGSVISSCANLASLEE-GAQFHCLALVSGLRPYVTVSN 417

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +L+++Y K    E A++LFDEM + D +SW +++  + Q G    ++++F +M   G   
Sbjct: 418 ALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKP 477

Query: 128 KAELLAGIISLCSQIGELELGR-------QIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
                 G++S CS+ G ++ GR       Q H +V +D  +       T ++DLYS+   
Sbjct: 478 DGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDIVPLDDHY-------TCMIDLYSR-SG 529

Query: 181 WLIALRVFEQMVIR--NEVSWTAMISGC 206
           WL     F + + R  +   W  ++S C
Sbjct: 530 WLKQAEEFIKQMPRCPDAFGWATLLSAC 557


>gi|449435958|ref|XP_004135761.1| PREDICTED: cohesin subunit SA-1-like [Cucumis sativus]
          Length = 1866

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 181/571 (31%), Positives = 300/571 (52%), Gaps = 9/571 (1%)

Query: 10  TLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSL 69
            L  +K   H +        L S++  C+    H     Q+H   + +   + P + N+L
Sbjct: 13  NLSFFKSHYHQTPFLHPLTSLNSLLN-CSRTSKH---ATQIHSQLITTALLSLPFLFNNL 68

Query: 70  ISMYAKFSKPESAYQLFDEMP--YRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +++YAK    +    LF   P   ++ +SW S+I   T+     ++L  F  M   G   
Sbjct: 69  LNLYAKCGSVDQTLLLFSSAPDDSKNVVSWTSLITQLTRFKRPFKALTFFNHMRRSGVYP 128

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
                + ++S C+       G Q+H+LV   G F   VFV +AL+D+Y+KC   L+A +V
Sbjct: 129 NHYTFSAVLSACTDTTASVHGEQMHSLVWKHG-FLAEVFVVSALVDMYAKCCDMLMAEKV 187

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKP-TRVTLTIVLLACAELRD 246
           FE+M +RN VSW  MI G + ++ YD  I  F+ +  E +     V+ + V  ACA   +
Sbjct: 188 FEEMPVRNLVSWNTMIVGFLQNKLYDQAIFFFKTLLLENLTALDEVSFSSVFSACANAGN 247

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L  GK +HG A   G     +++ +L  MY +C    +    +F  T  +DVV W+ +I 
Sbjct: 248 LEFGKQVHGVALKLGVWNLVYINNSLSDMYGKCG-LFNDVAKLFSNTGARDVVTWNIMIM 306

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
            Y  + +  +A   F  MR +   P+  +  ++L SC   + L  G  +H  I+++G   
Sbjct: 307 AYVYNHNYEDACNSFWMMRRKGSIPDEASYSSVLHSCANLAALYQGTLIHNQIIRSGFVK 366

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           ++ + ++L+ MY+KCGS+  + QIF E   R+ V WT +I+    HG+    ++LF +M 
Sbjct: 367 NLRVASSLITMYAKCGSLVDAFQIFEETEDRNVVCWTAIIAACQQHGHANWVVELFEQML 426

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
             G++PD IT +++LSAC+H G V+E    FN+++K   I    EHYAC VDLL ++G++
Sbjct: 427 REGIKPDYITFVSVLSACSHTGRVEEGFFYFNSMIKVHGIYPGHEHYACIVDLLSRAGEL 486

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546
           + A + +  MP+KP   +  +L+SACR H  L + + +A +L + EP+N  NY LL  + 
Sbjct: 487 DRAKRFIELMPIKPDASVWGALLSACRNHSNLIMGKEVALKLFDLEPDNPGNYVLLCNIL 546

Query: 547 SESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           + +G    A+EV R M + G+ K  G S I+
Sbjct: 547 TRNGMLNEADEVRRKMESIGVRKEPGCSWID 577


>gi|125561353|gb|EAZ06801.1| hypothetical protein OsI_29045 [Oryza sativa Indica Group]
          Length = 696

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 189/567 (33%), Positives = 295/567 (52%), Gaps = 8/567 (1%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           + +H  GL SNT  L S +++ A A+     G QL   ALKSG   +   +++L+ +YAK
Sbjct: 82  RAMHAQGLASNTFALGSALRSAAVAR-RPAIGAQLQSLALKSGLANNVFAASALLDVYAK 140

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
             +   A Q+FD MP R+T+SWN++I  +T++G    +LE+F EM   G V      A +
Sbjct: 141 CGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLVPDEATFASL 200

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM-VIR 194
           ++         L  Q+H  ++  GS  L + V  A +  YS+C     + R+F+ +  IR
Sbjct: 201 LTAVEGPSCF-LMHQLHGKIVKYGS-ALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDIR 258

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLF-RAMQREGVKPTRVTLTIVLLACAEL-RDLRNGKA 252
           + +SW AM+     +   D  +  F R MQ  GV P   + T ++ +C+E   D   G+ 
Sbjct: 259 DLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGRV 318

Query: 253 IHGYAYCCGFDFDHHLSAALMHMYCECTE--ALHPARIIFERTKVKDVVIWSSIIRGYSQ 310
           IHG       +    +  AL+ MY    E   +  A   F    +KD V W+S++ GYSQ
Sbjct: 319 IHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSWNSMLTGYSQ 378

Query: 311 SGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSI 370
            G  ++A+K F  M  E +  +     A L S +  + L  G  +H  ++ +G   +  +
Sbjct: 379 HGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQIHGLVIHSGFASNDFV 438

Query: 371 GNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV 430
            ++L+ MYSK G I  + + F E      V W  +I GY  HG  E    LF EM +   
Sbjct: 439 SSSLIFMYSKSGIIDDARKSFEEADKSSSVPWNAMIFGYAQHGQAENVDILFNEMLQRKA 498

Query: 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDAC 490
             D IT + ++++C+HAGLV E   + N +  +  + L +EHYAC VDL G++G+++ A 
Sbjct: 499 PLDHITFVGLITSCSHAGLVDEGSEILNTMETKYGVPLRMEHYACGVDLYGRAGQLDKAK 558

Query: 491 KVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESG 550
           K++ +MP +P   +  +L+ ACRIHG +E+A  +A  L  AEP   + Y LLS + S  G
Sbjct: 559 KLIDSMPFEPDAMVWMTLLGACRIHGNVELASDVASHLFVAEPRQHSTYVLLSSMYSGLG 618

Query: 551 NWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            W     V RVM+ +GLSK  G+S IE
Sbjct: 619 MWSDRATVQRVMKKRGLSKVPGWSLIE 645



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 148/543 (27%), Positives = 268/543 (49%), Gaps = 34/543 (6%)

Query: 43  HQHFGL---QLHCTALKSGSDADPVISNSLISMYAKFSKPE---SAYQLFDEMPYRDTIS 96
           H H  +   + H + LKSG  A P   N L++ Y++ S P+   +A ++FDE+P RD +S
Sbjct: 3   HHHLAVAAARSHASLLKSGFAA-PTPWNQLLTAYSR-SSPDGLAAARRVFDEVPRRDEVS 60

Query: 97  WNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVI 156
           WN+++     +G +  +  + R M+  G       L   +   +      +G Q+ +L +
Sbjct: 61  WNALLAAHAASGAHPEAWRLLRAMHAQGLASNTFALGSALRSAAVARRPAIGAQLQSLAL 120

Query: 157 VDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGI 216
             G    +VF ++ALLD+Y+KC     A +VF+ M  RN VSW A+I+G  +S +  + +
Sbjct: 121 KSG-LANNVFAASALLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASAL 179

Query: 217 DLFRAMQREGVKPTRVTLTIVLLA-----CAELRDLRNGKAIHGYAYCCGFDFDHHLSAA 271
           +LF  M+REG+ P   T   +L A     C  +  L +GK +  Y    G      L+AA
Sbjct: 180 ELFLEMEREGLVPDEATFASLLTAVEGPSCFLMHQL-HGKIVK-YGSALGLTV---LNAA 234

Query: 272 LMHMYCECTEALHPARIIFERT-KVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER-I 329
           +   Y +C  +L  +R IF+    ++D++ W++++  Y+ +G   EAMK F RM  E  +
Sbjct: 235 IT-AYSQCG-SLKDSRRIFDGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGV 292

Query: 330 EPNSVTLLAILSSCTRQSFLSH-GLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS---IT 385
            P+  +  +I+SSC+      H G  +H  ++K+ L     + NAL+ MY++      + 
Sbjct: 293 HPDMYSFTSIISSCSEHGHDDHQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMME 352

Query: 386 SSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
            +++ FN +  +D VSW ++++GY  HG   +AL+ F  M    V  D     A L + +
Sbjct: 353 DAYKCFNSLVLKDTVSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSS 412

Query: 446 HAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDACKVVSTMPMKPSTR 503
              +++  + +   V+       A   +  +  + +  KSG I+DA K       K S+ 
Sbjct: 413 ELAVLQLGKQIHGLVIHS---GFASNDFVSSSLIFMYSKSGIIDDARKSFEEAD-KSSSV 468

Query: 504 ILSSLVSACRIHGRLEVAEMLAHQLIEAE-PENAANYTLLSMVCSESGNWLGAEEVWRVM 562
             ++++     HG+ E  ++L +++++ + P +   +  L   CS +G      E+   M
Sbjct: 469 PWNAMIFGYAQHGQAENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSEILNTM 528

Query: 563 RAK 565
             K
Sbjct: 529 ETK 531



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 161/352 (45%), Gaps = 33/352 (9%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           ++ +  + + +  SG++ +     S+I +C+      H G  +H   +KS  +    + N
Sbjct: 277 DEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGRVIHGLVIKSALEGVTPVCN 336

Query: 68  SLISMYAKFSKP---ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG 124
           +LI+MY ++++    E AY+ F+ +  +DT+SWNS++  ++Q+G    +L+ FR M  C 
Sbjct: 337 ALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSWNSMLTGYSQHGLSADALKFFRCM--CS 394

Query: 125 FVLKAELLAGIISL--CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL 182
             ++ +  A   +L   S++  L+LG+QIH LVI  G F  + FVS++L+ +YSK     
Sbjct: 395 ENVRTDEYAFSAALRSSSELAVLQLGKQIHGLVIHSG-FASNDFVSSSLIFMYSKSGIID 453

Query: 183 IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
            A + FE+    + V W AMI G       +    LF  M +       +T   ++ +C+
Sbjct: 454 DARKSFEEADKSSSVPWNAMIFGYAQHGQAENVDILFNEMLQRKAPLDHITFVGLITSCS 513

Query: 243 ELRDLRNGKAI-------HGYA-----YCCGFDFDHHLSAALMHMYCECTEALHPARIIF 290
               +  G  I       +G       Y CG D           +Y    +     ++I 
Sbjct: 514 HAGLVDEGSEILNTMETKYGVPLRMEHYACGVD-----------LYGRAGQLDKAKKLID 562

Query: 291 ERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSS 342
                 D ++W +++      G++  A  + S + +   EP   +   +LSS
Sbjct: 563 SMPFEPDAMVWMTLLGACRIHGNVELASDVASHLFVA--EPRQHSTYVLLSS 612


>gi|449444600|ref|XP_004140062.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17210-like [Cucumis sativus]
          Length = 747

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 169/539 (31%), Positives = 308/539 (57%), Gaps = 18/539 (3%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYR-DTISWNSIINCFT 105
           G   H    +SG  A   + NSL+S+YA+      A++LF EM  R D +SW+ +I  F 
Sbjct: 167 GFAFHGYIFRSGFSAILSVQNSLLSLYAEVHM-YFAHKLFGEMSVRNDVVSWSVMIGGFV 225

Query: 106 QNGFYVRSLEMFREMYL-CGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELS 164
           Q G   +   MFR M    G       +  ++  C+ + ++ LG  +H LVI  G  E  
Sbjct: 226 QIGEDEQGFLMFRNMVTEAGIPPDGVTVVSVLKACTNLKDISLGTMVHGLVIFRG-LEDD 284

Query: 165 VFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR 224
           +FV  +L+D+YSKC +   A + F+++  +N +SW  M+S  I ++++   + L   M R
Sbjct: 285 LFVGNSLIDMYSKCFNVHSAFKAFKEIPEKNIISWNLMLSAYILNESHLEALALLGTMVR 344

Query: 225 EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
           EG +   VTL  VL       D    +++HG     G++ +  L  +++  Y +C   + 
Sbjct: 345 EGAEKDEVTLANVLQIAKHFLDSLKCRSVHGVIIRKGYESNELLLNSVIDAYAKCN-LVE 403

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
            AR++F+    KDVV WS++I G++++G   EA+ +F +M  E + PN+V+++ ++ +C 
Sbjct: 404 LARMVFDGMNKKDVVAWSTMIAGFARNGKPDEAISVFKQMN-EEVIPNNVSIMNLMEACA 462

Query: 345 -----RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDF 399
                RQS  +HG+ V     + GL  +V IG ++++MYSKCG I +S + FN++  ++ 
Sbjct: 463 VSAELRQSKWAHGIAV-----RRGLASEVDIGTSIIDMYSKCGDIEASIRAFNQIPQKNV 517

Query: 400 VSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNN 459
           V W+ +IS +  +G   EAL LF +++++G +P+A+T L++LSAC+H GL++E  + F +
Sbjct: 518 VCWSAMISAFRINGLAHEALMLFEKIKQNGTKPNAVTALSLLSACSHGGLMEEGLSFFTS 577

Query: 460 VMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP--MKPSTRILSSLVSACRIHGR 517
           ++++  I   +EHY+C VD+L ++GK  +A +++  +P  M+    I  +L+S+CR +G 
Sbjct: 578 MVQKHGIEPGLEHYSCIVDMLSRAGKFNEALELIEKLPKEMEAGASIWGTLLSSCRSYGN 637

Query: 518 LEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
           + +    A ++++ EP ++A Y L S + +  G  + + ++ R+ + KG+    G+S +
Sbjct: 638 ISLGSGAASRVLQLEPLSSAGYMLASNLYANCGLMIDSAKMRRLAKEKGVKVVAGYSLV 696



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 153/551 (27%), Positives = 278/551 (50%), Gaps = 19/551 (3%)

Query: 7   YEQTLHLYKQELHPSGL-YSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           +++ L LY  E+  SG   S+T +LPS++KAC+   T  + G  +H   +K G  +   I
Sbjct: 28  WQEALQLY-HEIRISGAQLSDTWVLPSILKACS--NTSFNLGTAMHGCLIKQGCQSSTSI 84

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
           +NS I  Y K+   +SA + FD    +D++SWN +++    NG  +  L  F +     F
Sbjct: 85  ANSTIDFYMKYGDLDSAQRAFDSTKNKDSVSWNVMVHGNFSNGSIMAGLCWFIKGRFAHF 144

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
                 L  +I    ++     G   H  +   G F   + V  +LL LY++ H +  A 
Sbjct: 145 QPNISSLLLVIQAFRELKIYSQGFAFHGYIFRSG-FSAILSVQNSLLSLYAEVHMYF-AH 202

Query: 186 RVFEQMVIRNE-VSWTAMISGCIDSQNYDTGIDLFRAMQRE-GVKPTRVTLTIVLLACAE 243
           ++F +M +RN+ VSW+ MI G +     + G  +FR M  E G+ P  VT+  VL AC  
Sbjct: 203 KLFGEMSVRNDVVSWSVMIGGFVQIGEDEQGFLMFRNMVTEAGIPPDGVTVVSVLKACTN 262

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
           L+D+  G  +HG     G + D  +  +L+ MY +C   +H A   F+    K+++ W+ 
Sbjct: 263 LKDISLGTMVHGLVIFRGLEDDLFVGNSLIDMYSKCFN-VHSAFKAFKEIPEKNIISWNL 321

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLS--HGLGVHCYIMK 361
           ++  Y  +    EA+ L   M  E  E + VTL  +L     + FL       VH  I++
Sbjct: 322 MLSAYILNESHLEALALLGTMVREGAEKDEVTLANVLQ--IAKHFLDSLKCRSVHGVIIR 379

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
            G   +  + N++++ Y+KC  +  +  +F+ M  +D V+W+T+I+G+  +G  +EA+ +
Sbjct: 380 KGYESNELLLNSVIDAYAKCNLVELARMVFDGMNKKDVVAWSTMIAGFARNGKPDEAISV 439

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
           F +M E  V P+ ++++ ++ AC  +  +++++   + +   + +A  ++     +D+  
Sbjct: 440 FKQMNEE-VIPNNVSIMNLMEACAVSAELRQSKWA-HGIAVRRGLASEVDIGTSIIDMYS 497

Query: 482 KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE--AEPENAANY 539
           K G IE + +  + +P K +    S+++SA RI+G    A ML  ++ +   +P      
Sbjct: 498 KCGDIEASIRAFNQIPQK-NVVCWSAMISAFRINGLAHEALMLFEKIKQNGTKPNAVTAL 556

Query: 540 TLLSMVCSESG 550
           +LLS  CS  G
Sbjct: 557 SLLS-ACSHGG 566



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 123/241 (51%), Gaps = 6/241 (2%)

Query: 209 SQNYDTGIDLFRAMQREGVKPTRV-TLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
           S N+   + L+  ++  G + +    L  +L AC+       G A+HG     G      
Sbjct: 25  SGNWQEALQLYHEIRISGAQLSDTWVLPSILKACSN-TSFNLGTAMHGCLIKQGCQSSTS 83

Query: 268 LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
           ++ + +  Y +  + L  A+  F+ TK KD V W+ ++ G   +G +   +  F + R  
Sbjct: 84  IANSTIDFYMKYGD-LDSAQRAFDSTKNKDSVSWNVMVHGNFSNGSIMAGLCWFIKGRFA 142

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
             +PN  +LL ++ +       S G   H YI ++G +  +S+ N+L+++Y++   +  +
Sbjct: 143 HFQPNISSLLLVIQAFRELKIYSQGFAFHGYIFRSGFSAILSVQNSLLSLYAEV-HMYFA 201

Query: 388 HQIFNEMAAR-DFVSWTTLISGYGFHGYGEEALQLFLEM-QESGVEPDAITVLAILSACN 445
           H++F EM+ R D VSW+ +I G+   G  E+   +F  M  E+G+ PD +TV+++L AC 
Sbjct: 202 HKLFGEMSVRNDVVSWSVMIGGFVQIGEDEQGFLMFRNMVTEAGIPPDGVTVVSVLKACT 261

Query: 446 H 446
           +
Sbjct: 262 N 262



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 76/142 (53%), Gaps = 2/142 (1%)

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIE-PNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           S I+  S SG+  EA++L+  +R+   +  ++  L +IL +C+  SF + G  +H  ++K
Sbjct: 17  SKIKDASYSGNWQEALQLYHEIRISGAQLSDTWVLPSILKACSNTSF-NLGTAMHGCLIK 75

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
            G     SI N+ ++ Y K G + S+ + F+    +D VSW  ++ G   +G     L  
Sbjct: 76  QGCQSSTSIANSTIDFYMKYGDLDSAQRAFDSTKNKDSVSWNVMVHGNFSNGSIMAGLCW 135

Query: 422 FLEMQESGVEPDAITVLAILSA 443
           F++ + +  +P+  ++L ++ A
Sbjct: 136 FIKGRFAHFQPNISSLLLVIQA 157


>gi|242035545|ref|XP_002465167.1| hypothetical protein SORBIDRAFT_01g033280 [Sorghum bicolor]
 gi|241919021|gb|EER92165.1| hypothetical protein SORBIDRAFT_01g033280 [Sorghum bicolor]
          Length = 564

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 164/509 (32%), Positives = 287/509 (56%), Gaps = 13/509 (2%)

Query: 19  HPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI-SNSLISMYAKFS 77
           HP  L  ++   P +++A     +   F    H  AL+ G     V  S SL+  Y +F 
Sbjct: 63  HP--LRPDSFTFPPLVRAAPGPASAAQF----HACALRLGLLHPNVFASGSLVHAYLRFG 116

Query: 78  KPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS 137
           +   AY++FDEMP RD  +WN++++   +N   V ++ +F  M   G    A  L+ ++ 
Sbjct: 117 RVAEAYRVFDEMPERDVPAWNAMLSGLCRNARAVDAVALFGRMVGEGVAGDAVTLSSVLP 176

Query: 138 LCSQIGELELGRQIHALVIVDG-SFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
           +C  +G+  L   +H   +  G S EL  FV  AL+D+Y K    + A  VF  M +R+ 
Sbjct: 177 MCVLLGDRALALVMHVYAVKRGLSGEL--FVCNALIDVYGKLGMLVEARWVFGGMALRDL 234

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           V+W ++IS           ++LF  M + GV P  +TL  +  A A+  D R  K++H Y
Sbjct: 235 VTWNSIISAYEQGGKVAAAVELFHGMMKSGVSPDVLTLVSLASAVAQCGDERGAKSVHCY 294

Query: 257 AYCCGFDFDHHLSA-ALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
               G+D    ++  A++ MY + ++ +  A+++F+    +DVV W+++I GY Q+G  +
Sbjct: 295 VRRRGWDVGDIIAGNAVVDMYAKLSK-IDAAQMVFDNLPDRDVVSWNTLITGYMQNGLSN 353

Query: 316 EAMKLFSRMRL-ERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
           EA+++++ M+  E ++P   T ++IL + +    L  G+ +H   +K GLN DV +   L
Sbjct: 354 EAVRIYNDMQNHEGLKPIQGTFVSILPAYSNLGALQQGMRMHALSIKTGLNLDVYVSTCL 413

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           +++Y+KCG +  +  +F  M  R    W  +I+G G HG+G +AL LF +MQ+ G++PD 
Sbjct: 414 IDLYAKCGKLVEAMLLFEHMPRRSTGPWNAIIAGLGVHGHGAKALNLFSQMQQEGIKPDN 473

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS 494
           +T +++L+AC+HAGLV +  + F+ +     I    +HYAC VD+LG++G++++A + + 
Sbjct: 474 VTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYACMVDMLGRAGQLDEAFEFIQ 533

Query: 495 TMPMKPSTRILSSLVSACRIHGRLEVAEM 523
            MP+KP + +  +L+ ACRIHG +E+A +
Sbjct: 534 GMPIKPDSAVWGALLGACRIHGNVELAAI 562


>gi|296082238|emb|CBI21243.3| unnamed protein product [Vitis vinifera]
          Length = 778

 Score =  301 bits (772), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 179/551 (32%), Positives = 291/551 (52%), Gaps = 22/551 (3%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPY 91
           ++IK C   +  +     LH + LKS     P +  SLI+ YA       AY LF     
Sbjct: 9   ALIKQCVTLEALK----SLHASILKS--HLHPHLCTSLIAQYASLGSISHAYALFSTSHS 62

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQI 151
            +   WN II  F+       SL ++  M   G          ++  C  + + ELG + 
Sbjct: 63  SNVFLWNHIIRAFSNTPHSRNSLRLYSRMLQLGIQATNFTFPFLLKACGCLADFELGARA 122

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQN 211
           HA V+V G +E  VFV+ +L+ +Y +   +  + +VFE+M  RN VSW++M+     +  
Sbjct: 123 HAHVVVFG-YESDVFVANSLMAMYGRFGCFDFSRQVFERMPERNVVSWSSMVGAYAHNGR 181

Query: 212 YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC-----CGFDFDH 266
           Y+ G+ LF  M  EG+ P R ++ +  +AC         +      +C      G D D 
Sbjct: 182 YEEGLLLFWRMLNEGIAPNRGSI-VNAMACIH-------REHEADDFCRVVIDNGLDSDQ 233

Query: 267 HLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRL 326
            +  A M MY  C   +  AR  F     KD+V W+S+I  Y Q+     A++LF +M+L
Sbjct: 234 SVQNAAMGMYARCGR-IDVARRFFYGILDKDLVAWTSMIEAYVQADLPINALELFKQMKL 292

Query: 327 ERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITS 386
             I P+SVTLL+++ + +  +       VH  I ++     +++  A++++Y KCG++  
Sbjct: 293 LGIVPDSVTLLSLIHAVSNLASFQLARFVHGVITRSFFKNHIALDTAVIDLYVKCGNLEY 352

Query: 387 SHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH 446
           + + F+ M+AR+ +SW+T+ISGYG HG+G EAL LF +M+ S ++PD I  + +LSAC+H
Sbjct: 353 ARKCFDRMSARNLISWSTMISGYGMHGHGREALCLFDQMKAS-IKPDHIAFVMVLSACSH 411

Query: 447 AGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILS 506
            GL+ E    F  + ++  +    EHYAC VDLLG++G++ +A   +  MP+ P   +  
Sbjct: 412 GGLIAEGWECFKAMNRDFGVTPRTEHYACMVDLLGRAGRLSEAQAFIERMPITPDAGVWG 471

Query: 507 SLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566
           +L+ ACRIH  LE AE  A  L   + EN   Y LLS + + SG    A+++  +M+++G
Sbjct: 472 ALLGACRIHSNLETAETAARHLFNLDAENPGRYILLSNIYASSGKRKEADDIRALMKSRG 531

Query: 567 LSKSYGFSRIE 577
           + K+ G + IE
Sbjct: 532 VRKTVGHTIIE 542


>gi|147765658|emb|CAN78103.1| hypothetical protein VITISV_043511 [Vitis vinifera]
          Length = 1849

 Score =  301 bits (772), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 177/611 (28%), Positives = 311/611 (50%), Gaps = 42/611 (6%)

Query: 6    FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQ--HFGLQLHCTALKSGSDADP 63
            F E+   L+   L    +  N A + S++  CA  + +    +G ++HC  L+     + 
Sbjct: 1155 FTEEAFKLFHAMLK-GPIQPNYATIASILPVCASLEENAGYRYGKEVHCHVLRRMELVED 1213

Query: 64   V-ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL 122
            V + NSL+S Y +  + E A  LF  M  RD +SWN+II  +  NG ++++LE+F E ++
Sbjct: 1214 VSVINSLMSFYLRIXQMEKAEFLFRNMKSRDLVSWNAIIAGYASNGEWLKALELFSE-FI 1272

Query: 123  CGFVLKAE--LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
                +K +   L  ++  C+ +  L++ + IH  +I          V  ALL  Y+KC++
Sbjct: 1273 SLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYIIRHPGLREDTSVGNALLSFYAKCNY 1332

Query: 181  WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
               AL+ F  +  ++ +SW A++    +S      ++L   M REG++P  +T+  ++  
Sbjct: 1333 TQAALQTFLMISRKDLISWNAILDAFTESGCETHLVNLLHWMLREGIRPDSITILTIIQY 1392

Query: 241  CAELRDLRNGKAIHGYAYCCGF---DFDHHLSAALMHMYCECTEALHPARI--------- 288
             A +  ++  K  H Y+   G    D    L   ++  Y +C    +   I         
Sbjct: 1393 YAAVSRVKKVKETHSYSIRFGLLQGDAXPTLGNGMLDAYAKCGNMKYAVNIFGSLSEKRN 1452

Query: 289  ----------------------IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRL 326
                                  IF      D+  W+ ++R Y+++    +A+ LF  ++ 
Sbjct: 1453 VVTCNSMISGYVTSSSHDDAYAIFNTMSETDLTTWNLMVRVYAENDFPDQALSLFHELQG 1512

Query: 327  ERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITS 386
            + ++P+ VT+++IL +C   + +      H Y+++A  N DV +  A ++MYSKCGS+  
Sbjct: 1513 QGMKPDIVTIMSILPACAHMASVHMLRQCHGYVIRACFN-DVRLNGAFIDMYSKCGSVFG 1571

Query: 387  SHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH 446
            ++++F     +D V +T ++ G+  HG GEEAL++F  M E GV+PD + + A+L AC+H
Sbjct: 1572 AYKLFLSSPQKDLVMFTAMVGGFAMHGMGEEALRIFSYMLELGVKPDHVIITAVLFACSH 1631

Query: 447  AGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILS 506
            AGLV E   +FN++ K       +E YAC VDLL + G+I+DA   V+ MP++ +  I  
Sbjct: 1632 AGLVDEGWKIFNSIEKVHGFQPTMEQYACVVDLLARGGRIKDAYTFVTRMPIEANANIWG 1691

Query: 507  SLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566
            +L+ ACR H  +E+  ++A  L + E +N  NY ++S + +    W G  E+ R+MR + 
Sbjct: 1692 TLLGACRTHHEVELGRVVADHLFKIESDNIGNYVVMSNLYAADARWDGVMEIRRLMRTRE 1751

Query: 567  LSKSYGFSRIE 577
            L K  G S IE
Sbjct: 1752 LKKPAGCSWIE 1762



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 139/472 (29%), Positives = 245/472 (51%), Gaps = 27/472 (5%)

Query: 1    MVSKHFYEQTLHLYKQELHPS-GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGS 59
            ++ KH  ++ L L+ + +  S G   N  IL +++K+C  A +   FG  LH  ALK G 
Sbjct: 946  LMEKH--DEALSLFLERVRCSVGYKPNGQILAALLKSCV-AXSAIRFGSVLHGYALKLGH 1002

Query: 60   DADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLE---M 116
             +   +   L+++YAK    +   +LF EM  RD + WN +++     GF     E   +
Sbjct: 1003 VSCQSLCKGLLNLYAKSGALDYCNKLFGEMDQRDPVIWNIVLSGLA--GFQSHEAEVMRL 1060

Query: 117  FREMYLCGFVLKAEL-LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLY 175
            FR M++        + +A ++ +C+++ E + G+ +H+ VI  G  E       AL+ +Y
Sbjct: 1061 FRAMHMVNEAKPNSVTIAIVLPVCARLRE-DAGKSVHSYVIKSG-LESHTLAGNALISMY 1118

Query: 176  SKCHHWLI---ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRV 232
            +KC   L+   A   F ++  ++ VSW A+I+G  +++  +    LF AM +  ++P   
Sbjct: 1119 AKCG--LVCSDAYAAFNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYA 1176

Query: 233  TLTIVLLACAELRD---LRNGKAIHGYAY-CCGFDFDHHLSAALMHMYCECTEALHPARI 288
            T+  +L  CA L +    R GK +H +         D  +  +LM  Y    + +  A  
Sbjct: 1177 TIASILPVCASLEENAGYRYGKEVHCHVLRRMELVEDVSVINSLMSFYLRIXQ-MEKAEF 1235

Query: 289  IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSR-MRLERIEPNSVTLLAILSSCTRQS 347
            +F   K +D+V W++II GY+ +G+  +A++LFS  + LE I+P+SVTL+++L +C    
Sbjct: 1236 LFRNMKSRDLVSWNAIIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVH 1295

Query: 348  FLSHGLGVHCYIMK-AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
             L    G+H YI++  GL  D S+GNAL++ Y+KC    ++ Q F  ++ +D +SW  ++
Sbjct: 1296 NLQVAKGIHGYIIRHPGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRKDLISWNAIL 1355

Query: 407  SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL---SACNHAGLVKEAET 455
              +   G     + L   M   G+ PD+IT+L I+   +A +    VKE  +
Sbjct: 1356 DAFTESGCETHLVNLLHWMLREGIRPDSITILTIIQYYAAVSRVKKVKETHS 1407


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  301 bits (772), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 167/568 (29%), Positives = 294/568 (51%), Gaps = 42/568 (7%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQ--------LFDEMPYRDTISWNSI 100
           Q+H   L S +   P  +N+L+S  A      S+          +F ++P   T   N +
Sbjct: 34  QIHAQILHSNTT--PENTNTLLSKLALSICTLSSSSSSLHYALSVFSQIPNPHTHFSNQL 91

Query: 101 INCFTQNGFYVRSLEMFREMY-LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDG 159
           +   +++ F  +++ ++  +  +  F L       ++   S++     G +IH L    G
Sbjct: 92  LRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVSAFNHGLEIHGLASKLG 151

Query: 160 SFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLF 219
            F    F+ T L+ +Y+ C   + A  +F++M   + V+W  +I G   + +YD  + LF
Sbjct: 152 -FVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALRLF 210

Query: 220 RAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCEC 279
             M+   +KP  V L  VL AC    +L  G+ IH +    G+  D HL  AL++MY  C
Sbjct: 211 EDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYANC 270

Query: 280 TEA------------------------------LHPARIIFERTKVKDVVIWSSIIRGYS 309
                                            +  AR IF++   +D+V WS++I GY+
Sbjct: 271 GAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYA 330

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
           +S    EA+KLF  M  +R  P+ +T+L+++S+C+    L+    +H Y+ ++G    +S
Sbjct: 331 ESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALS 390

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
           + NAL++MY+KCG++  + ++F  M  ++ +SW+++I+ +  HG  + A++LF  M+E  
Sbjct: 391 VNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVN 450

Query: 430 VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
           +EP+ +T + +L AC HAGLV+E E LF++++ E  I+   EHY C VDL  ++  +  A
Sbjct: 451 IEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFLRKA 510

Query: 490 CKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSES 549
            +++ TMP  P+  I  SL+SAC++HG  E+ E  A +L+E EP++     +LS + ++ 
Sbjct: 511 IELIETMPFAPNVIIWGSLMSACQVHGEAELGEFAAKRLLELEPDHDGALVVLSNIYAKE 570

Query: 550 GNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
             W     + + M  KG+SK    SRIE
Sbjct: 571 KRWNDVGLIRKSMSYKGISKEKASSRIE 598


>gi|326495618|dbj|BAJ85905.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 788

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 178/556 (32%), Positives = 300/556 (53%), Gaps = 12/556 (2%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSG-SDADPVISNSLISMYAKFSKPESAYQLFDE 88
            P V+K CA        G   H  A++ G + AD    NSL++ YA+    + A ++FD 
Sbjct: 111 FPVVLKCCARLGALDE-GRAAHSAAIRLGVAAADVYTGNSLLAFYARLGLVDDAERVFDG 169

Query: 89  MPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK--AELLAGIISLCSQIGELE 146
           MP RD ++WNS+++ +  NG    +L  FREM+    V      ++A + + C +   ++
Sbjct: 170 MPARDVVTWNSMVDGYVSNGLGTLALVCFREMHEALEVQHDGVGIIAALAACCLESALMQ 229

Query: 147 LGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGC 206
            GR++HA VI  G  E  V V T++LD+Y KC     A  VF  M  R  V+W  MI G 
Sbjct: 230 -GREVHAYVIRHG-MEHDVKVGTSILDMYCKCGDIASAEGVFATMPSRTVVTWNCMIGGY 287

Query: 207 IDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDH 266
             ++  +   D F  M+ EG +   VT   +L ACA+      G+++HGY     F    
Sbjct: 288 ALNERPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQTESSLYGRSVHGYITRRQFLPHV 347

Query: 267 HLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRL 326
            L  AL+ MY +  + +  +  +F +   K +V W+++I  Y       EA+ LF  +  
Sbjct: 348 VLETALLEMYSKVGK-VKSSEKVFGQMTTKTLVSWNNMIAAYMYKEMYMEAITLFLDLLN 406

Query: 327 ERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITS 386
           + + P+  T+ A++ +      L     +H YI++ G   +  I NA+M+MY++CG + S
Sbjct: 407 QPLYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIIRLGYGENTLIMNAIMHMYARCGDVLS 466

Query: 387 SHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH 446
           S +IF++MAA+D +SW T+I GY  HG G  AL++F EM+ +G+ P+  T +++L+AC+ 
Sbjct: 467 SREIFDKMAAKDVISWNTMIMGYAIHGQGRSALEMFSEMKCNGLRPNESTFVSVLTACSV 526

Query: 447 AGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILS 506
           +GL  E  T FN++ ++  +   IEHY C  DLLG++G +++  + +  MP+ P+ R+  
Sbjct: 527 SGLTDEGWTQFNSMQRDYGMIPQIEHYGCMTDLLGRAGDLKEVMQFIENMPIDPTFRVWG 586

Query: 507 SLVSACRIHGRLEVAEMLAHQLIEAEP-----ENAANYTLLSMVCSESGNWLGAEEVWRV 561
           SL++A R    +++AE  A ++ + E      +N   Y L+S + +++G W   E +  +
Sbjct: 587 SLLTASRNRNDIDIAEYAAERIFQLEQDQLEHDNTGCYVLISSMYADAGRWKDVERIKSL 646

Query: 562 MRAKGLSKSYGFSRIE 577
           M  KGL ++   S +E
Sbjct: 647 MEEKGLRRTDPRSIVE 662



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/275 (28%), Positives = 140/275 (50%), Gaps = 6/275 (2%)

Query: 228 KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGF-DFDHHLSAALMHMYCECTEALHPA 286
           +P R T  +VL  CA L  L  G+A H  A   G    D +   +L+  Y      +  A
Sbjct: 105 RPDRFTFPVVLKCCARLGALDEGRAAHSAAIRLGVAAADVYTGNSLLAFYARLG-LVDDA 163

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR--LERIEPNSVTLLAILSSCT 344
             +F+    +DVV W+S++ GY  +G  + A+  F  M   LE ++ + V ++A L++C 
Sbjct: 164 ERVFDGMPARDVVTWNSMVDGYVSNGLGTLALVCFREMHEALE-VQHDGVGIIAALAACC 222

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
            +S L  G  VH Y+++ G+  DV +G ++++MY KCG I S+  +F  M +R  V+W  
Sbjct: 223 LESALMQGREVHAYVIRHGMEHDVKVGTSILDMYCKCGDIASAEGVFATMPSRTVVTWNC 282

Query: 405 LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK 464
           +I GY  +   EEA   F++M+  G + + +T + +L+AC          ++   + + +
Sbjct: 283 MIGGYALNERPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQTESSLYGRSVHGYITRRQ 342

Query: 465 KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
            +   +   A  +++  K GK++ + KV   M  K
Sbjct: 343 FLPHVVLETA-LLEMYSKVGKVKSSEKVFGQMTTK 376



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 104/211 (49%), Gaps = 13/211 (6%)

Query: 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV 355
           +D  + + +IRG + +G    A+  ++ M      P+  T   +L  C R   L  G   
Sbjct: 71  RDAFLHNVVIRGLADAGLPGAALAAYAAMLAAGARPDRFTFPVVLKCCARLGALDEGRAA 130

Query: 356 HCYIMKAGL-NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGY 414
           H   ++ G+   DV  GN+L+  Y++ G +  + ++F+ M ARD V+W +++ GY  +G 
Sbjct: 131 HSAAIRLGVAAADVYTGNSLLAFYARLGLVDDAERVFDGMPARDVVTWNSMVDGYVSNGL 190

Query: 415 GEEALQLFLEMQES-GVEPDAITVLAILSACNHAGLVKEAETLFNNVMK-----EKKIAL 468
           G  AL  F EM E+  V+ D + ++A L+AC     + +   +   V++     + K+  
Sbjct: 191 GTLALVCFREMHEALEVQHDGVGIIAALAACCLESALMQGREVHAYVIRHGMEHDVKVGT 250

Query: 469 AIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           +I      +D+  K G I  A  V +TMP +
Sbjct: 251 SI------LDMYCKCGDIASAEGVFATMPSR 275


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 172/560 (30%), Positives = 295/560 (52%), Gaps = 32/560 (5%)

Query: 49  QLHCTALKSGSD-ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQN 107
           Q+H   L+S  D +  ++   +IS  A  S  + A  +F+ +P  +T   N  +   +++
Sbjct: 41  QVHAQILRSKLDRSTSLLVKLVISSCALSSSLDYALSVFNLIPKPETHLCNRFLRELSRS 100

Query: 108 GFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFV 167
               ++L ++  M   G  +       ++   S++  L  G +IH L    G F+   FV
Sbjct: 101 EEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAAKLG-FDSDPFV 159

Query: 168 STALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV 227
            T L+ +Y+ C     A  +F++M  R+ V+W+ MI G   S  ++  + LF  M+   V
Sbjct: 160 QTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNV 219

Query: 228 KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECT------- 280
           +P  + L+ VL AC    +L  GK IH +        D HL +AL+ MY  C        
Sbjct: 220 EPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALN 279

Query: 281 --EALHP---------------------ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
             E + P                     AR +F +   KD+V WS++I GY++S    EA
Sbjct: 280 LFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEA 339

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
           + LF+ M+   I+P+ VT+L+++++C     L     +H ++ K G    + I NAL+ M
Sbjct: 340 LNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPINNALIEM 399

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           Y+KCGS+  + +IF++M  ++ +SWT +IS +  HG    AL+ F +M++  +EP+ IT 
Sbjct: 400 YAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNGITF 459

Query: 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
           + +L AC+HAGLV+E   +F +++ E  I     HY C VDL G++  + +A ++V  MP
Sbjct: 460 VGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLREALELVEAMP 519

Query: 498 MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEE 557
           + P+  I  SL++ACR+HG +E+ E  A +L+E +P++   +  LS + +++  W    +
Sbjct: 520 LAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPDHDGAHVFLSNIYAKARRWEDVGQ 579

Query: 558 VWRVMRAKGLSKSYGFSRIE 577
           V ++M+ KG+SK  G SR E
Sbjct: 580 VRKLMKHKGISKERGCSRFE 599


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 163/435 (37%), Positives = 263/435 (60%), Gaps = 4/435 (0%)

Query: 143 GELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAM 202
           G+L  G++IH LV+  G FE  VFV+ +L+ +YS+      A ++F+ M  R+  SW AM
Sbjct: 8   GDLLDGKKIHCLVLKLG-FEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAM 66

Query: 203 ISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGF 262
           ISG   + N    +D+   M+ EGVK   +T+  VL  CA++ D+ +GK IH Y    G 
Sbjct: 67  ISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVIKHGL 126

Query: 263 DFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFS 322
           +F+  +S AL++MY +     H  ++      +KDVV W+++I GY+Q+G  SEA++++ 
Sbjct: 127 EFELFVSNALINMYAKFGSLGHAQKVF--GLLIKDVVSWNTLITGYAQNGLASEAIEVYL 184

Query: 323 RMRL-ERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
            M   E I PN  T ++IL + +    L  G+ +H  ++K  L  DV +G  L++MY KC
Sbjct: 185 LMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKC 244

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
           G +  +  +F ++  ++ V W  +IS YG HG GE+AL+LF EM+   V+PD IT +++L
Sbjct: 245 GKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHITFVSLL 304

Query: 442 SACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPS 501
           SAC+H+GLV +A+  FN + +E  I  +++HY C VDL G++G++E A   +  MP++P 
Sbjct: 305 SACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKKMPIQPD 364

Query: 502 TRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRV 561
                +L++ACRIHG +E+ +  + +L E + EN   Y LLS + +  G W G ++V  +
Sbjct: 365 ASAWGALLNACRIHGNIELGKHASERLFEVDSENVGYYVLLSNIYANVGKWEGVDDVRSL 424

Query: 562 MRAKGLSKSYGFSRI 576
            R +GL K+ G+S I
Sbjct: 425 ARDRGLRKNPGWSSI 439



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 118/408 (28%), Positives = 213/408 (52%), Gaps = 17/408 (4%)

Query: 31  PSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMP 90
           P V+KAC         G ++HC  LK G + D  ++ SL+ MY++F     A +LFD+MP
Sbjct: 1   PPVVKACGDLLD----GKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMP 56

Query: 91  YRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQ 150
            RD  SWN++I+ + QNG    +L++  EM L G  + A  +A ++ +C+Q+G++  G+ 
Sbjct: 57  ARDRGSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKL 116

Query: 151 IHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQ 210
           IH  VI  G  E  +FVS AL+++Y+K      A +VF  ++I++ VSW  +I+G   + 
Sbjct: 117 IHLYVIKHG-LEFELFVSNALINMYAKFGSLGHAQKVF-GLLIKDVVSWNTLITGYAQNG 174

Query: 211 NYDTGIDLFRAMQR-EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS 269
                I+++  M+  E + P + T   +L A + +  L+ G  IHG         D  + 
Sbjct: 175 LASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVG 234

Query: 270 AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
             L+ MY +C + L  A  +F +   K+ V W+++I  Y   GD  +A++LF  M+ ER+
Sbjct: 235 TCLIDMYGKCGK-LDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERV 293

Query: 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIM---KAGLNFDVSIGNALMNMYSKCGSITS 386
           +P+ +T +++LS+C+    +S      C+ M   + G+   +     +++++ + G +  
Sbjct: 294 KPDHITFVSLLSACSHSGLVSDAQ--WCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEM 351

Query: 387 SHQIFNEMAAR-DFVSWTTLISGYGFHG---YGEEALQLFLEMQESGV 430
           +     +M  + D  +W  L++    HG    G+ A +   E+    V
Sbjct: 352 AFNFIKKMPIQPDASAWGALLNACRIHGNIELGKHASERLFEVDSENV 399


>gi|6723387|emb|CAB66396.1| putative protein [Arabidopsis thaliana]
          Length = 1113

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 180/563 (31%), Positives = 313/563 (55%), Gaps = 12/563 (2%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGS-DADPVISNSLISMYAKFSKP- 79
           GL  N     +VI+AC+ +      G       +K+G  ++D  +  SLI M+ K     
Sbjct: 161 GLVPNDYCYTAVIRACSNSD-FVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSF 219

Query: 80  ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLC 139
           E+AY++FD+M   + ++W  +I    Q GF   ++  F +M L GF      L+ + S C
Sbjct: 220 ENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSAC 279

Query: 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH---HWLIALRVFEQMVIRNE 196
           +++  L LG+Q+H+  I  G   L   V  +L+D+Y+KC          +VF++M   + 
Sbjct: 280 AELENLSLGKQLHSWAIRSG---LVDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSV 336

Query: 197 VSWTAMISGCIDSQNYDT-GIDLFRAMQREG-VKPTRVTLTIVLLACAELRDLRNGKAIH 254
           +SWTA+I+G + + N  T  I+LF  M  +G V+P   T +    AC  L D R GK + 
Sbjct: 337 MSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVL 396

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
           G A+  G   +  ++ +++ M+ + ++ +  A+  FE    K++V +++ + G  ++ + 
Sbjct: 397 GQAFKRGLASNSSVANSVISMFVK-SDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNF 455

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
            +A KL S +    +  ++ T  ++LS       +  G  +H  ++K GL+ +  + NAL
Sbjct: 456 EQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNAL 515

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           ++MYSKCGSI ++ ++FN M  R+ +SWT++I+G+  HG+    L+ F +M E GV+P+ 
Sbjct: 516 ISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNE 575

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS 494
           +T +AILSAC+H GLV E    FN++ ++ KI   +EHYAC VDLL ++G + DA + ++
Sbjct: 576 VTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFIN 635

Query: 495 TMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLG 554
           TMP +    +  + + ACR+H   E+ ++ A +++E +P   A Y  LS + + +G W  
Sbjct: 636 TMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEE 695

Query: 555 AEEVWRVMRAKGLSKSYGFSRIE 577
           + E+ R M+ + L K  G S IE
Sbjct: 696 STEMRRKMKERNLVKEGGCSWIE 718



 Score =  194 bits (494), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 145/544 (26%), Positives = 260/544 (47%), Gaps = 17/544 (3%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           ++    S++K+C  A+  +  G  +H   ++   + D V+ NSLIS+Y+K      A  +
Sbjct: 61  DSVTFSSLLKSCIRARDFR-LGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDV 119

Query: 86  FDEMPY---RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQI 142
           F+ M     RD +SW++++ C+  NG  + ++++F E    G V        +I  CS  
Sbjct: 120 FETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNS 179

Query: 143 GELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH-WLIALRVFEQMVIRNEVSWTA 201
             + +GR     ++  G FE  V V  +L+D++ K  + +  A +VF++M   N V+WT 
Sbjct: 180 DFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTL 239

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           MI+ C+        I  F  M   G +  + TL+ V  ACAEL +L  GK +H +A   G
Sbjct: 240 MITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSG 299

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL-SEAMKL 320
              D   S   M+  C    ++   R +F+R +   V+ W+++I GY ++ +L +EA+ L
Sbjct: 300 LVDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINL 359

Query: 321 FSRMRLE-RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           FS M  +  +EPN  T  +   +C   S    G  V     K GL  + S+ N++++M+ 
Sbjct: 360 FSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFV 419

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           K   +  + + F  ++ ++ VS+ T + G   +   E+A +L  E+ E  +   A T  +
Sbjct: 420 KSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFAS 479

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC--YVDLLGKSGKIEDACKVVSTMP 497
           +LS   + G +++ E + + V+   K+ L+     C   + +  K G I+ A +V + M 
Sbjct: 480 LLSGVANVGSIRKGEQIHSQVV---KLGLSCNQPVCNALISMYSKCGSIDTASRVFNFME 536

Query: 498 MKPSTRILSSLVSACRIHG-RLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAE 556
            + +    +S+++    HG  + V E     + E    N   Y  +   CS  G      
Sbjct: 537 NR-NVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGL---VS 592

Query: 557 EVWR 560
           E WR
Sbjct: 593 EGWR 596



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 123/229 (53%), Gaps = 7/229 (3%)

Query: 222 MQREGVKP-TRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECT 280
           M R+G++P   VT + +L +C   RD R GK +H        + D  L  +L+ +Y +  
Sbjct: 52  MARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSG 111

Query: 281 EALHPARIIFE---RTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLL 337
           ++   A  +FE   R   +DVV WS+++  Y  +G   +A+K+F       + PN     
Sbjct: 112 DSAK-AEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYT 170

Query: 338 AILSSCTRQSFLSHGLGVHCYIMKAG-LNFDVSIGNALMNMYSKC-GSITSSHQIFNEMA 395
           A++ +C+   F+  G     ++MK G    DV +G +L++M+ K   S  +++++F++M+
Sbjct: 171 AVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMS 230

Query: 396 ARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
             + V+WT +I+     G+  EA++ FL+M  SG E D  T+ ++ SAC
Sbjct: 231 ELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSAC 279



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 92/192 (47%), Gaps = 5/192 (2%)

Query: 310 QSGDLSEAMKLFSRMRLERIEP-NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
            +GDL  A+     M  + I P +SVT  ++L SC R      G  VH  +++  +  D 
Sbjct: 38  NAGDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDS 97

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEM---AARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            + N+L+++YSK G    +  +F  M     RD VSW+ +++ YG +G   +A+++F+E 
Sbjct: 98  VLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEF 157

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS-G 484
            E G+ P+     A++ AC+++  V         +MK       +      +D+  K   
Sbjct: 158 LELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGEN 217

Query: 485 KIEDACKVVSTM 496
             E+A KV   M
Sbjct: 218 SFENAYKVFDKM 229


>gi|226505108|ref|NP_001141927.1| uncharacterized protein LOC100274076 [Zea mays]
 gi|194706472|gb|ACF87320.1| unknown [Zea mays]
 gi|413938142|gb|AFW72693.1| hypothetical protein ZEAMMB73_533387 [Zea mays]
          Length = 583

 Score =  301 bits (771), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 180/575 (31%), Positives = 298/575 (51%), Gaps = 17/575 (2%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           F+ Q L LY Q  H   L    A      KACA  +  +H G  +H  AL +G  +D  +
Sbjct: 22  FHRQALALYSQMRHFDHLTFTFAA-----KACAGLRLRRH-GRAVHGRALAAGFGSDAYV 75

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
            N+++SMY +     +A  +F  +P R T+SWN++I    ++G   R+LE+F  M   G 
Sbjct: 76  QNAIVSMYMRCRDVAAAEAVFVALPSRTTVSWNTVITGCVKDGRAERALEVFETMVDRGV 135

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
            +    +  ++  C+Q  +L  GR +H L +V G     V V  AL+D+Y KC     A 
Sbjct: 136 CIDRASVVSVLPACAQARDLHTGRAVHRLAVVRG-LGKYVAVKNALIDMYGKCGSLEDAR 194

Query: 186 RVF-EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG-VKPTRVTLTIVLLACAE 243
           RVF E    ++ VSWT MI   + + +      L   M      +P  VT+  +L ACA 
Sbjct: 195 RVFDEDSYDKDVVSWTVMIGAYVLNDHASKAFALGSEMLVSSEAQPNAVTMAHLLSACAS 254

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
           L   ++ K  H      G   D  +  AL+  Y +C   +    ++ E+   +    W++
Sbjct: 255 LLSGKHAKCTHALCIRLGLGSDIVVETALVDCYAKCGY-MGVIDMVVEKGS-RRTETWNA 312

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
            I GY+Q     +A+ LF RM  E + P+S T+ +++ +    + L     +HC ++  G
Sbjct: 313 AISGYTQRDQGKKALALFKRMLAESVRPDSATMASVIPAYAESADLVQANNIHCCLLVRG 372

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
                 I   L+++Y+K G +  + ++F  +  +D V+WTT+I+GYG HG+ + A+ L+ 
Sbjct: 373 CLVSTDIATGLIDLYAKAGDLGVAWELFQCLPEKDVVAWTTVIAGYGMHGHAQTAMLLYS 432

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS 483
            M E GV P+ +T+ ++L +C+HAG+V E   LFN++     +    EHY C VD+LG++
Sbjct: 433 RMVELGVMPNTVTIASLLHSCSHAGMVDEGLRLFNDMHGVHGLMPNAEHYLCLVDMLGRA 492

Query: 484 GKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLS 543
           G+IE+A + +  MP +P+  + SSL+ AC +H  +E  E+ A  L E EP+N  NY LL 
Sbjct: 493 GRIEEAYRRIEDMPFEPTVSVWSSLLGACVLHENVEFGEVAAKHLFELEPDNVGNYVLLG 552

Query: 544 MVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIEN 578
            V + +  W   + + RVM      + + F++I++
Sbjct: 553 KVYAAAERWSDVQHLRRVM------EEWIFTKIQD 581



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 120/254 (47%), Gaps = 10/254 (3%)

Query: 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHC 357
           V + ++++R YS  G   +A+ L+S+MR      + +T      +C       HG  VH 
Sbjct: 7   VSVSNTLLRSYSGLGFHRQALALYSQMR----HFDHLTFTFAAKACAGLRLRRHGRAVHG 62

Query: 358 YIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEE 417
             + AG   D  + NA+++MY +C  + ++  +F  + +R  VSW T+I+G    G  E 
Sbjct: 63  RALAAGFGSDAYVQNAIVSMYMRCRDVAAAEAVFVALPSRTTVSWNTVITGCVKDGRAER 122

Query: 418 ALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFN-NVMKEKKIALAIEHYACY 476
           AL++F  M + GV  D  +V+++L AC  A  +     +    V++     +A+++    
Sbjct: 123 ALEVFETMVDRGVCIDRASVVSVLPACAQARDLHTGRAVHRLAVVRGLGKYVAVKN--AL 180

Query: 477 VDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLI---EAEP 533
           +D+ GK G +EDA +V             + ++ A  ++     A  L  +++   EA+P
Sbjct: 181 IDMYGKCGSLEDARRVFDEDSYDKDVVSWTVMIGAYVLNDHASKAFALGSEMLVSSEAQP 240

Query: 534 ENAANYTLLSMVCS 547
                  LLS   S
Sbjct: 241 NAVTMAHLLSACAS 254


>gi|2191182|gb|AAB61067.1| similar to N. tabacum membrane-associated salt-inducible protein
           (PID:g473874) [Arabidopsis thaliana]
          Length = 597

 Score =  301 bits (771), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 181/559 (32%), Positives = 303/559 (54%), Gaps = 41/559 (7%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEM 89
           L S+++ C  +         +H   L  G   D V+  SLI++Y       SA  +F+  
Sbjct: 33  LLSLLRECTNSTKSLRRIKLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVFENF 92

Query: 90  PYRDTI---------SWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
             R  +         SWN++I+CF Q+G   ++LE+F  M   GF   +  L   IS CS
Sbjct: 93  DIRSDVYIWNSLMSASWNTVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACS 152

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
           ++  LE G++IH   +  G FEL  +V++AL+D+Y KC    +A  VF++M  ++ V+W 
Sbjct: 153 RLLWLERGKEIHRKCVKKG-FELDEYVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWN 211

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
           +MI G +   +  + +++   M  EG +P++ TLT +L+AC+  R+L +GK IH      
Sbjct: 212 SMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFIHA----- 266

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVV-IWSSIIRGYSQSGDLSEAMK 319
                                  + A  +F +T+ KDV   W+ +I  Y   G+  +A++
Sbjct: 267 -----------------------NLAETVFSKTQ-KDVAESWNVMISSYISVGNWFKAVE 302

Query: 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           ++ +M    ++P+ VT  ++L +C++ + L  G  +H  I ++ L  D  + +AL++MYS
Sbjct: 303 VYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLETDELLLSALLDMYS 362

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           KCG+   + +IFN +  +D VSWT +IS YG HG   EAL  F EMQ+ G++PD +T+LA
Sbjct: 363 KCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQFDEMQKFGLKPDGVTLLA 422

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP-M 498
           +LSAC HAGL+ E    F+ +  +  I   IEHY+C +D+LG++G++ +A +++   P  
Sbjct: 423 VLSACGHAGLIDEGLKFFSQMRSKYGIEPIIEHYSCMIDILGRAGRLLEAYEIIQQTPET 482

Query: 499 KPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEV 558
             +  +LS+L SAC +H    + + +A  L+E  P++A+ Y +L  + +   +W  A  V
Sbjct: 483 SDNAELLSTLFSACCLHLEHSLGDRIARLLVENYPDDASTYMVLFNLYASGESWDAARRV 542

Query: 559 WRVMRAKGLSKSYGFSRIE 577
              M+  GL K  G S IE
Sbjct: 543 RLKMKEMGLRKKPGCSWIE 561


>gi|147834193|emb|CAN75306.1| hypothetical protein VITISV_040403 [Vitis vinifera]
          Length = 826

 Score =  301 bits (771), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 160/526 (30%), Positives = 293/526 (55%), Gaps = 4/526 (0%)

Query: 53  TALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVR 112
           + +K G +++  ++ +LI  Y+ +      +++F++ P +D + W+++++   ++G Y  
Sbjct: 114 SVIKLGFESEVSVATALIGFYSDYDMG-IVWKIFNQTPIKDLVLWSAMVSACVKSGQYGE 172

Query: 113 SLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALL 172
           + E+FR M   G       +  I+  C+ +G L  G++IH   I    F     V  +L+
Sbjct: 173 AFEIFRAMQYDGVEPNHVSIVSILPACANVGALLFGKEIHGFSI-KKMFHPLTNVHNSLV 231

Query: 173 DLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRV 232
           D+Y+KC ++  ++ VF+Q++ ++ +SWT +I GCI++         F  MQ         
Sbjct: 232 DMYAKCRNFKASMLVFDQILEKDLISWTTIIRGCIENDCPREAFKAFSRMQFSCFGADET 291

Query: 233 TLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFER 292
            +  +++A  +  + + G A HG+    G      +  AL+ MY +  E L  A I+F++
Sbjct: 292 IVQDLIVAIIQADEHKFGIAFHGFLLKNGLLAFVSIGTALLQMYAKFGE-LESAIIVFDQ 350

Query: 293 TKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHG 352
              KD + WS++I  ++ S     A++ F +M+     PN +T +++L +C+       G
Sbjct: 351 LNKKDYISWSAMISVHAHSRHPYNALETFKQMQSTDERPNEITFVSLLQACSLIGAQELG 410

Query: 353 LGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFH 412
             +  +  KAG   +  + +AL+++Y K G I     IFNE+  +D V W+++I+GYG +
Sbjct: 411 ESIQAHATKAGYLSNAFLSSALIDLYCKFGRINQGRAIFNEIPTKDLVCWSSMINGYGLN 470

Query: 413 GYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEH 472
           G G+EAL+ F  M   GV+P+ +  +++LSAC+H GL  E  + F+++ ++  I   + H
Sbjct: 471 GCGDEALETFSNMLACGVKPNEVVFISVLSACSHCGLEHEGWSCFSSMEQKYGIIPKLPH 530

Query: 473 YACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACR-IHGRLEVAEMLAHQLIEA 531
           YAC VDL+ + G IE A + V+ MPM+P  RI  +L++ CR  HG +E+AE++A +LI  
Sbjct: 531 YACMVDLISRRGNIEGALQFVNKMPMEPDKRIWGALLAGCRSTHGSIEIAELVAERLIGL 590

Query: 532 EPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +P+N + Y +LS + +E G W   E + +++  KGL K  G+S IE
Sbjct: 591 DPQNTSYYVILSNLYAEQGRWGDVERLRKLVDEKGLKKEMGYSMIE 636



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 123/441 (27%), Positives = 216/441 (48%), Gaps = 13/441 (2%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           Y +   +++  +   G+  N   + S++ ACA       FG ++H  ++K        + 
Sbjct: 170 YGEAFEIFRA-MQYDGVEPNHVSIVSILPACANVGALL-FGKEIHGFSIKKMFHPLTNVH 227

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           NSL+ MYAK    +++  +FD++  +D ISW +II    +N     + + F  M    F 
Sbjct: 228 NSLVDMYAKCRNFKASMLVFDQILEKDLISWTTIIRGCIENDCPREAFKAFSRMQFSCFG 287

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS--TALLDLYSKCHHWLIA 184
               ++  +I    Q  E + G   H  ++ +G   L  FVS  TALL +Y+K      A
Sbjct: 288 ADETIVQDLIVAIIQADEHKFGIAFHGFLLKNG---LLAFVSIGTALLQMYAKFGELESA 344

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
           + VF+Q+  ++ +SW+AMIS    S++    ++ F+ MQ    +P  +T   +L AC+ +
Sbjct: 345 IIVFDQLNKKDYISWSAMISVHAHSRHPYNALETFKQMQSTDERPNEITFVSLLQACSLI 404

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
                G++I  +A   G+  +  LS+AL+ +YC+    ++  R IF     KD+V WSS+
Sbjct: 405 GAQELGESIQAHATKAGYLSNAFLSSALIDLYCKFGR-INQGRAIFNEIPTKDLVCWSSM 463

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYI-MKAG 363
           I GY  +G   EA++ FS M    ++PN V  +++LS+C+       G      +  K G
Sbjct: 464 INGYGLNGCGDEALETFSNMLACGVKPNEVVFISVLSACSHCGLEHEGWSCFSSMEQKYG 523

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISG-YGFHGYGEEALQL 421
           +   +     ++++ S+ G+I  + Q  N+M    D   W  L++G    HG  E A +L
Sbjct: 524 IIPKLPHYACMVDLISRRGNIEGALQFVNKMPMEPDKRIWGALLAGCRSTHGSIEIA-EL 582

Query: 422 FLEMQESGVEPDAITVLAILS 442
             E +  G++P   +   ILS
Sbjct: 583 VAE-RLIGLDPQNTSYYVILS 602



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 183/382 (47%), Gaps = 17/382 (4%)

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
           N +SWT+ IS  +     +  + LF+ M     +P  VT+  V+ A + L      + I 
Sbjct: 53  NVISWTSKISSLVKQNQSELAVGLFKMMLMTEQRPNHVTVLSVIRAISGLGLEDMMRVIC 112

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
           G     GF+ +  ++ AL+  Y +    +     IF +T +KD+V+WS+++    +SG  
Sbjct: 113 GSVIKLGFESEVSVATALIGFYSDYDMGI--VWKIFNQTPIKDLVLWSAMVSACVKSGQY 170

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
            EA ++F  M+ + +EPN V++++IL +C     L  G  +H + +K   +   ++ N+L
Sbjct: 171 GEAFEIFRAMQYDGVEPNHVSIVSILPACANVGALLFGKEIHGFSIKKMFHPLTNVHNSL 230

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           ++MY+KC +  +S  +F+++  +D +SWTT+I G   +    EA + F  MQ S    D 
Sbjct: 231 VDMYAKCRNFKASMLVFDQILEKDLISWTTIIRGCIENDCPREAFKAFSRMQFSCFGADE 290

Query: 435 ITV----LAILSACNHA-GLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
             V    +AI+ A  H  G+      L N ++    I  A+      + +  K G++E A
Sbjct: 291 TIVQDLIVAIIQADEHKFGIAFHGFLLKNGLLAFVSIGTAL------LQMYAKFGELESA 344

Query: 490 CKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSES 549
             V   +  K    I  S + +   H R     +   + +++  E     T +S++  ++
Sbjct: 345 IIVFDQLNKK--DYISWSAMISVHAHSRHPYNALETFKQMQSTDERPNEITFVSLL--QA 400

Query: 550 GNWLGAEEVWRVMRAKGLSKSY 571
            + +GA+E+   ++A      Y
Sbjct: 401 CSLIGAQELGESIQAHATKAGY 422



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 3/141 (2%)

Query: 3   SKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDAD 62
           S+H Y   L  +KQ +  +    N     S+++AC+     Q  G  +   A K+G  ++
Sbjct: 369 SRHPY-NALETFKQ-MQSTDERPNEITFVSLLQACSLIGA-QELGESIQAHATKAGYLSN 425

Query: 63  PVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL 122
             +S++LI +Y KF +      +F+E+P +D + W+S+IN +  NG    +LE F  M  
Sbjct: 426 AFLSSALIDLYCKFGRINQGRAIFNEIPTKDLVCWSSMINGYGLNGCGDEALETFSNMLA 485

Query: 123 CGFVLKAELLAGIISLCSQIG 143
           CG      +   ++S CS  G
Sbjct: 486 CGVKPNEVVFISVLSACSHCG 506


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  301 bits (771), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 172/559 (30%), Positives = 305/559 (54%), Gaps = 5/559 (0%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
            GL  + A + +++  C+  + +   G+ +H  A+K G   + ++ N+LI MY+K     
Sbjct: 307 DGLIPDVATMVTLLPVCS-GEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLS 365

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE--LLAGIISL 138
            A  LF ++  +  +SWNS+I  +++ GF   + ++ R+M++   +++     +  ++  
Sbjct: 366 EAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPA 425

Query: 139 CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
           C +  EL   R +H   +   SF+    ++ A +  Y+KC   + A  VF  M  ++  S
Sbjct: 426 CLEESELLSLRALHGYSLRH-SFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSS 484

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258
           W A+I G   + +    +D +  M R G+ P   ++  +LLAC  L  L+ GK IHG+  
Sbjct: 485 WNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVL 544

Query: 259 CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAM 318
             G + +  ++ +L+ +Y  C++  +  R  FE    K+ V W++++ GYSQ+   +EA+
Sbjct: 545 RNGLEMNSFVAVSLLSLYFHCSKPFY-GRTYFETMGDKNSVCWNAMLSGYSQNELPNEAL 603

Query: 319 KLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMY 378
            LF +M  + +EP+ + + +IL +C++ S L  G  VHC+ +K  L  D  +  +LM+MY
Sbjct: 604 SLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMY 663

Query: 379 SKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
           +K G +  S +IFN +  ++  SW  +I+G+G HG G +A++LF +M+ S  +PD  T L
Sbjct: 664 AKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFL 723

Query: 439 AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPM 498
            +L AC HAGLV E       +    K+   +EHYAC +D+LG++G++ +A   ++ MP 
Sbjct: 724 GVLQACCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPE 783

Query: 499 KPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEV 558
           +P  +I SSL+S+   +  LE+ E  A +L+  E   A +Y LLS + + +G W     V
Sbjct: 784 EPDAKIWSSLLSSSITYVDLEMGEKFAEKLLALEANKADSYILLSNLYATAGKWDVVRMV 843

Query: 559 WRVMRAKGLSKSYGFSRIE 577
            + M+   L K  G S IE
Sbjct: 844 RQKMKDLSLQKDVGCSWIE 862



 Score =  225 bits (573), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 141/525 (26%), Positives = 265/525 (50%), Gaps = 19/525 (3%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V    Y++ +H + + +  +    +    P +IKAC   +   H G  +H  A+K G   
Sbjct: 185 VRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACT-GKCDIHLGKSVHGMAVKMGLIM 243

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D  + N++I++Y K    + A +LFD+MP ++ ISWNS+I  F++NGF++ +   FR + 
Sbjct: 244 DLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLL 303

Query: 122 LC--GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH 179
               G +     +  ++ +CS  G +++G  IH + +  G     + V  AL+D+YSKC 
Sbjct: 304 ESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVH-ELMVCNALIDMYSKCG 362

Query: 180 HWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRA--MQREGVKPTRVTLTIV 237
               A  +F ++  ++ VSW +MI             DL R   M+ E ++   VT+  +
Sbjct: 363 CLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNL 422

Query: 238 LLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKD 297
           L AC E  +L + +A+HGY+    F +   ++ A +  Y +C   +    + F     K 
Sbjct: 423 LPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFF-GMNTKS 481

Query: 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHC 357
           V  W+++I G++Q+GD  +A+  +  M    I P+  +++++L +C R   L +G  +H 
Sbjct: 482 VSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHG 541

Query: 358 YIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEE 417
           ++++ GL  +  +  +L+++Y  C         F  M  ++ V W  ++SGY  +    E
Sbjct: 542 FVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNE 601

Query: 418 ALQLFLEMQESGVEPDAITVLAILSACNH---AGLVKEAE--TLFNNVMKEKKIALAIEH 472
           AL LF +M   G+EPD I + +IL AC+     GL KE     L N++M++  +A ++  
Sbjct: 602 ALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSL-- 659

Query: 473 YACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGR 517
               +D+  KSG +  + ++ + +  K      + +++   +HG+
Sbjct: 660 ----MDMYAKSGFLGHSQRIFNRLNGKEVAS-WNVMITGFGVHGQ 699



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 111/407 (27%), Positives = 207/407 (50%), Gaps = 7/407 (1%)

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
            D V++  LI+MY+    P  +  +FD +  ++   WN++++ + +N  Y  ++  F E+
Sbjct: 141 GDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLEL 200

Query: 121 Y-LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH 179
             +  F         +I  C+   ++ LG+ +H + +  G   + +FV  A++ LY KC 
Sbjct: 201 ISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLI-MDLFVGNAMIALYGKCG 259

Query: 180 HWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM--QREGVKPTRVTLTIV 237
               A+ +F++M  +N +SW ++I G  ++  +      FR++    +G+ P   T+  +
Sbjct: 260 FLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTL 319

Query: 238 LLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKD 297
           L  C+   ++  G  IHG A   G   +  +  AL+ MY +C   L  A I+F + + K 
Sbjct: 320 LPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCG-CLSEAAILFRKIENKS 378

Query: 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRLER--IEPNSVTLLAILSSCTRQSFLSHGLGV 355
           VV W+S+I  YS+ G + E   L  +M +E   +E N VT+L +L +C  +S L     +
Sbjct: 379 VVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRAL 438

Query: 356 HCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYG 415
           H Y ++    +   I NA +  Y+KCGS+  +  +F  M  +   SW  +I G+  +G  
Sbjct: 439 HGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDP 498

Query: 416 EEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462
            +AL  + EM   G+ PD  +++++L AC   GL++  + +   V++
Sbjct: 499 IKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLR 545



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 175/323 (54%), Gaps = 8/323 (2%)

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
           + E +  ++  C Q   +E+GR++  ++ V   F     ++T L+ +YS C + L +  V
Sbjct: 106 RKEAMGMLLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLV 165

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLF-RAMQREGVKPTRVTLTIVLLACAELRD 246
           F++++ +N   W A++SG + ++ YD  I  F   +     +P   T   ++ AC    D
Sbjct: 166 FDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCD 225

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           +  GK++HG A   G   D  +  A++ +Y +C   L  A  +F++   ++++ W+S+IR
Sbjct: 226 IHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCG-FLDEAVELFDKMPEQNLISWNSLIR 284

Query: 307 GYSQSGDLSEAMKLFSRMRLERIE---PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           G+S++G   EA + F R  LE  +   P+  T++ +L  C+ +  +  G+ +H   +K G
Sbjct: 285 GFSENGFWLEAYRAF-RSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLG 343

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF- 422
           L  ++ + NAL++MYSKCG ++ +  +F ++  +  VSW ++I  Y   G+  E   L  
Sbjct: 344 LVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLR 403

Query: 423 -LEMQESGVEPDAITVLAILSAC 444
            + M+E  +E + +T+L +L AC
Sbjct: 404 KMWMEEELMEVNEVTILNLLPAC 426



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 157/322 (48%), Gaps = 12/322 (3%)

Query: 231 RVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDF--DHHLSAALMHMYCECTEALHPARI 288
           +  + ++L  C + +++  G+ +     C    F  D  L+  L+ MY  C   L  +R+
Sbjct: 107 KEAMGMLLQKCGQYKNVEIGRKLD-EMLCVSSQFSGDFVLNTRLITMYSICGYPLE-SRL 164

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM-RLERIEPNSVTLLAILSSCTRQS 347
           +F+R   K++  W++++ GY ++    EA+  F  +  +   +P++ T   ++ +CT + 
Sbjct: 165 VFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKC 224

Query: 348 FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLIS 407
            +  G  VH   +K GL  D+ +GNA++ +Y KCG +  + ++F++M  ++ +SW +LI 
Sbjct: 225 DIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIR 284

Query: 408 GYGFHGYGEEALQLFLEMQES--GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           G+  +G+  EA + F  + ES  G+ PD  T++ +L  C+  G V     +    +   K
Sbjct: 285 GFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAV---K 341

Query: 466 IALAIEHYAC--YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEM 523
           + L  E   C   +D+  K G + +A  +   +  K      S + +  R     E  ++
Sbjct: 342 LGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDL 401

Query: 524 LAHQLIEAEPENAANYTLLSMV 545
           L    +E E       T+L+++
Sbjct: 402 LRKMWMEEELMEVNEVTILNLL 423


>gi|225439791|ref|XP_002273763.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66500,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 498

 Score =  301 bits (770), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 173/497 (34%), Positives = 277/497 (55%), Gaps = 18/497 (3%)

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL 145
           FDEMP+RD  + NS+I    ++G  V +L +FR ++  G  L +  L  ++++   I   
Sbjct: 1   FDEMPHRDLYTLNSLIASHVRSGNAVAALSVFRRIHRAGSHLNSYTLTPVLAVLDPI--- 57

Query: 146 ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISG 205
             G+Q+HAL I  GS +      TAL+D+YSK      ++RVFE++  ++ V+W  M+S 
Sbjct: 58  -CGKQVHALAIKTGS-DTPTVTKTALMDMYSKYGQLGSSVRVFEEVGFKDVVTWNTMLSS 115

Query: 206 CIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFD 265
            +     +  + +FR MQ+EGV  +  TL  +L AC  L+  + GK +H      G D  
Sbjct: 116 FVRHGRPEEALAVFREMQKEGVWLSEFTLCSLLKACTLLKAFQQGKQVHALVVVMGRDLV 175

Query: 266 HHLSAALMHMYCECTEALHPARIIFERTK-VKDVVIWSSIIRGYSQSGDLSEAMKLFSRM 324
             L  AL+  Y    E +  A  IF      KD V+ +S+I G  ++    EA  + S M
Sbjct: 176 V-LGTALIDFYTN-VECIGEAMEIFHNLNWKKDDVMRNSLISGCVRNRRYKEAFLIMSAM 233

Query: 325 RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSI 384
           R     PN V + + L++C++ S L  G  +HC  M+ G  FD  + N L++MY+KCG I
Sbjct: 234 R-----PNVVAVTSALAACSKNSDLWVGKQIHCVAMRFGFTFDTQLCNVLLDMYAKCGKI 288

Query: 385 TSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG--VEPDAITVLAILS 442
            ++  +F+ M  +D VSWT++I  YG HG+G EAL+LF +M+  G  + P+ +T LA+LS
Sbjct: 289 LNARSLFDRMDKKDVVSWTSMIDAYGNHGHGLEALKLFKKMEGEGNSILPNLVTFLAVLS 348

Query: 443 ACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM---PMK 499
           AC H+G+V++ +  FN + K+  +    EHYAC++D+LG++G+IE+  ++ + M     K
Sbjct: 349 ACAHSGMVEQGQECFNLIQKKYSLDPGPEHYACFIDILGRAGQIEEVWRLFNNMIKNQTK 408

Query: 500 PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVW 559
           P+  + +++++AC  +  +   E  A  L+E EP    NY LLS   +  G W    E+ 
Sbjct: 409 PTAAVWAAILNACSHNLDVSRGEFAAKNLLELEPNKPGNYVLLSNFYAAVGRWDSVNELR 468

Query: 560 RVMRAKGLSKSYGFSRI 576
            +MR KGL K  G S +
Sbjct: 469 SIMRKKGLVKETGNSWV 485



 Score =  195 bits (495), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 138/450 (30%), Positives = 224/450 (49%), Gaps = 46/450 (10%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           + +H +G + N+  L  V+     A      G Q+H  A+K+GSD   V   +L+ MY+K
Sbjct: 33  RRIHRAGSHLNSYTLTPVL-----AVLDPICGKQVHALAIKTGSDTPTVTKTALMDMYSK 87

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
           + +  S+ ++F+E+ ++D ++WN++++ F ++G    +L +FREM   G  L    L  +
Sbjct: 88  YGQLGSSVRVFEEVGFKDVVTWNTMLSSFVRHGRPEEALAVFREMQKEGVWLSEFTLCSL 147

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI-R 194
           +  C+ +   + G+Q+HALV+V G  +L V + TAL+D Y+       A+ +F  +   +
Sbjct: 148 LKACTLLKAFQQGKQVHALVVVMGR-DL-VVLGTALIDFYTNVECIGEAMEIFHNLNWKK 205

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
           ++V   ++ISGC+ ++ Y     +  AM     +P  V +T  L AC++  DL  GK IH
Sbjct: 206 DDVMRNSLISGCVRNRRYKEAFLIMSAM-----RPNVVAVTSALAACSKNSDLWVGKQIH 260

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
             A   GF FD  L   L+ MY +C + L+ AR +F+R   KDVV W+S+I  Y   G  
Sbjct: 261 CVAMRFGFTFDTQLCNVLLDMYAKCGKILN-ARSLFDRMDKKDVVSWTSMIDAYGNHGHG 319

Query: 315 SEAMKLFSRMRLE--RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN 372
            EA+KLF +M  E   I PN VT LA+LS+C     +  G    C+              
Sbjct: 320 LEALKLFKKMEGEGNSILPNLVTFLAVLSACAHSGMVEQGQ--ECF-------------- 363

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
              N+  K  S+    +            +   I   G  G  EE  +LF  M ++  +P
Sbjct: 364 ---NLIQKKYSLDPGPE-----------HYACFIDILGRAGQIEEVWRLFNNMIKNQTKP 409

Query: 433 DAITVLAILSACNHAGLVKEAETLFNNVMK 462
            A    AIL+AC+H   V   E    N+++
Sbjct: 410 TAAVWAAILNACSHNLDVSRGEFAAKNLLE 439


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 175/533 (32%), Positives = 276/533 (51%), Gaps = 3/533 (0%)

Query: 46   FGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT 105
             G Q+H   ++SG D    + N LI+MY K      A  +F +M   D +SWN++I+   
Sbjct: 924  LGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCA 983

Query: 106  QNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGE-LELGRQIHALVIVDGSFELS 164
             +G    S+ MF ++   G +     +A ++  CS +G    L  QIHA  +  G   L 
Sbjct: 984  LSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVV-LD 1042

Query: 165  VFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR 224
             FVST L+D+YSK      A  +F      +  SW AM+ G I S ++   + L+  MQ 
Sbjct: 1043 SFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQE 1102

Query: 225  EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
             G +  ++TL     A   L  L+ GK I       GF+ D  + + ++ MY +C E + 
Sbjct: 1103 SGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGE-ME 1161

Query: 285  PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
             AR IF      D V W+++I G  ++G    A+  +  MRL +++P+  T   ++ +C+
Sbjct: 1162 SARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACS 1221

Query: 345  RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
              + L  G  +H   +K    FD  +  +L++MY+KCG+I  +  +F         SW  
Sbjct: 1222 LLTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNA 1281

Query: 405  LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK 464
            +I G   HG  EEALQ F EM+  GV PD +T + +LSAC+H+GLV EA   F ++ K  
Sbjct: 1282 MIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIY 1341

Query: 465  KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEML 524
             I   IEHY+C VD L ++G+I +A KV+S+MP + S  +  +L++ACR+    E  + +
Sbjct: 1342 GIEPEIEHYSCLVDALSRAGRIREAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRV 1401

Query: 525  AHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            A +L+  EP ++A Y LLS V + +  W        +MR   + K  GFS ++
Sbjct: 1402 AEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKANVKKDPGFSWVD 1454



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/380 (28%), Positives = 194/380 (51%), Gaps = 5/380 (1%)

Query: 17   ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
            +L   GL  +   + SV++AC+      H   Q+H  A+K+G   D  +S +LI +Y+K 
Sbjct: 997  DLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKS 1056

Query: 77   SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
             K E A  LF      D  SWN++++ +  +G + ++L ++  M   G       LA   
Sbjct: 1057 GKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAA 1116

Query: 137  SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
                 +  L+ G+QI A+V+  G F L +FV + +LD+Y KC     A R+F ++   ++
Sbjct: 1117 KAAGGLVGLKQGKQIQAVVVKRG-FNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDD 1175

Query: 197  VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
            V+WT MISGC+++   +  +  +  M+   V+P   T   ++ AC+ L  L  G+ IH  
Sbjct: 1176 VAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHAN 1235

Query: 257  AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
                   FD  +  +L+ MY +C   +  AR +F+RT    +  W+++I G +Q G+  E
Sbjct: 1236 TVKLNCAFDPFVMTSLVDMYAKCGN-IEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEE 1294

Query: 317  AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA--GLNFDVSIGNAL 374
            A++ F  M+   + P+ VT + +LS+C+    +S     + Y M+   G+  ++   + L
Sbjct: 1295 ALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAY-ENFYSMQKIYGIEPEIEHYSCL 1353

Query: 375  MNMYSKCGSITSSHQIFNEM 394
            ++  S+ G I  + ++ + M
Sbjct: 1354 VDALSRAGRIREAEKVISSM 1373



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 132/465 (28%), Positives = 221/465 (47%), Gaps = 16/465 (3%)

Query: 93   DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIH 152
            D I+WN  ++ F Q G    +++ F +M              ++S+ + +  LELG+QIH
Sbjct: 870  DVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIH 929

Query: 153  ALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNY 212
             +V+  G  +  V V   L+++Y K      A  VF QM   + VSW  MISGC  S   
Sbjct: 930  GIVVRSG-LDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLE 988

Query: 213  DTGIDLFRAMQREGVKPTRVTLTIVLLACAEL-RDLRNGKAIHGYAYCCGFDFDHHLSAA 271
            +  + +F  + R G+ P + T+  VL AC+ L         IH  A   G   D  +S  
Sbjct: 989  ECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTT 1048

Query: 272  LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP 331
            L+ +Y +  + +  A  +F      D+  W++++ GY  SGD  +A++L+  M+      
Sbjct: 1049 LIDVYSKSGK-MEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERA 1107

Query: 332  NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIF 391
            N +TL     +      L  G  +   ++K G N D+ + + +++MY KCG + S+ +IF
Sbjct: 1108 NQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIF 1167

Query: 392  NEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVK 451
            NE+ + D V+WTT+ISG   +G  E AL  +  M+ S V+PD  T   ++ AC+    ++
Sbjct: 1168 NEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALE 1227

Query: 452  EAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDACKVVSTMPMKPSTRILS--S 507
            +   +  N +   K+  A + +     VD+  K G IEDA  +        ++RI S  +
Sbjct: 1228 QGRQIHANTV---KLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRT---NTSRIASWNA 1281

Query: 508  LVSACRIHGRLEVAEMLAHQLIE--AEPENAANYTLLSMVCSESG 550
            ++     HG  E A     ++      P+      +LS  CS SG
Sbjct: 1282 MIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLS-ACSHSG 1325



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 121/457 (26%), Positives = 210/457 (45%), Gaps = 35/457 (7%)

Query: 38   AYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMP--YRDTI 95
            A A +    G + H   L SG   D  ++N+LI+MY+K     SA +LFD  P   RD +
Sbjct: 636  AIAASDLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLV 695

Query: 96   SWNSIINCFT---QNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIH 152
            +WN+I++      ++GF+     +FR +           LA +  +C           +H
Sbjct: 696  TWNAILSAHADKARDGFH-----LFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLH 750

Query: 153  ALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNY 212
               +  G  +  VFV+ AL+++Y+K      A  +F+ M +R+ V W  M+   +D+   
Sbjct: 751  GYAVKIG-LQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLE 809

Query: 213  DTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAAL 272
               + LF    R G++P  VTL  +       +++   +     AY              
Sbjct: 810  YEALLLFSEFNRTGLRPDDVTLCTLARVVKSKQNVLEWQLKQLKAY-----------GTK 858

Query: 273  MHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPN 332
            + MY +  +               DV+ W+  +  + Q G+  EA+  F  M   R+  +
Sbjct: 859  LFMYDDDDDG-------------SDVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACD 905

Query: 333  SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFN 392
             +T + +LS     + L  G  +H  ++++GL+  VS+GN L+NMY K GS++ +  +F 
Sbjct: 906  GLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFW 965

Query: 393  EMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKE 452
            +M   D VSW T+ISG    G  E ++ +F+++   G+ PD  TV ++L AC+  G    
Sbjct: 966  QMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCH 1025

Query: 453  AETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
              T  +    +  + L        +D+  KSGK+E+A
Sbjct: 1026 LATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEA 1062



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 123/500 (24%), Positives = 226/500 (45%), Gaps = 35/500 (7%)

Query: 50   LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
            LH  A+K G   D  ++ +L+++YAKF +   A  LFD M  RD + WN ++  +   G 
Sbjct: 749  LHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGL 808

Query: 110  YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVST 169
               +L +F E    G      L    ++LC+      L R + +   V    E  +    
Sbjct: 809  EYEALLLFSEFNRTG------LRPDDVTLCT------LARVVKSKQNV---LEWQL---- 849

Query: 170  ALLDLYSKCHHWLIALRVFEQMVIRNEV-SWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
                   +   +   L +++     ++V +W   +S  +        +D F  M    V 
Sbjct: 850  ------KQLKAYGTKLFMYDDDDDGSDVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVA 903

Query: 229  PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
               +T  ++L   A L  L  GK IHG     G D    +   L++MY + T ++  AR 
Sbjct: 904  CDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVK-TGSVSRART 962

Query: 289  IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
            +F +    D+V W+++I G + SG    ++ +F  +    + P+  T+ ++L +C+    
Sbjct: 963  VFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGG 1022

Query: 349  LSH-GLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLIS 407
              H    +H   MKAG+  D  +   L+++YSK G +  +  +F      D  SW  ++ 
Sbjct: 1023 GCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMH 1082

Query: 408  GYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIA 467
            GY   G   +AL+L++ MQESG   + IT+     A      +K+ + +   V+K +   
Sbjct: 1083 GYIVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVK-RGFN 1141

Query: 468  LAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAH- 526
            L +   +  +D+  K G++E A ++ + +P  P     ++++S C  +G+ E A    H 
Sbjct: 1142 LDLFVISGVLDMYLKCGEMESARRIFNEIP-SPDDVAWTTMISGCVENGQEEHALFTYHH 1200

Query: 527  -QLIEAEPENAANYTLLSMV 545
             +L + +P+    YT  ++V
Sbjct: 1201 MRLSKVQPD---EYTFATLV 1217



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 93/376 (24%), Positives = 167/376 (44%), Gaps = 33/376 (8%)

Query: 144 ELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM--VIRNEVSWTA 201
           +L LG++ HA ++  G      F++  L+ +YSKC     A ++F+      R+ V+W A
Sbjct: 641 DLPLGKRAHARILTSGHHP-DRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNA 699

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           ++S   D      G  LFR ++R  V  TR TL  V   C         +++HGYA   G
Sbjct: 700 ILSAHADKAR--DGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIG 757

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
             +D  ++ AL+++Y +    +  AR++F+   ++DVV+W+ +++ Y  +G   EA+ LF
Sbjct: 758 LQWDVFVAGALVNIYAKFGR-IREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLF 816

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
           S      + P+ VTL      CT    +     V  + +K    +   +    M      
Sbjct: 817 SEFNRTGLRPDDVTL------CTLARVVKSKQNVLEWQLKQLKAYGTKL---FMYDDDDD 867

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
           GS              D ++W   +S +   G   EA+  F++M  S V  D +T + +L
Sbjct: 868 GS--------------DVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVML 913

Query: 442 SACNHAGL-VKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKP 500
           S    AGL   E     + ++    +   +    C +++  K+G +  A  V   M  + 
Sbjct: 914 SVV--AGLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQM-NEV 970

Query: 501 STRILSSLVSACRIHG 516
                ++++S C + G
Sbjct: 971 DLVSWNTMISGCALSG 986



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 9/167 (5%)

Query: 337 LAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEM-- 394
            +IL      S L  G   H  I+ +G + D  + N L+ MYSKCGS++S+ ++F+    
Sbjct: 630 FSILRHAIAASDLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPD 689

Query: 395 AARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAE 454
            +RD V+W  ++S +       +   LF  ++ S V     T+  +   C  +     AE
Sbjct: 690 TSRDLVTWNAILSAHA--DKARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAE 747

Query: 455 TLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDACKVVSTMPMK 499
           +L    +   KI L  + +     V++  K G+I +A  +   M ++
Sbjct: 748 SLHGYAV---KIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLR 791


>gi|357507475|ref|XP_003624026.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360495|gb|ABN08505.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499041|gb|AES80244.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 646

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 182/560 (32%), Positives = 297/560 (53%), Gaps = 77/560 (13%)

Query: 55  LKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSL 114
           LKSG D D  + N ++ +YAK+   E A +LFDEMP R    WN +I+ +          
Sbjct: 126 LKSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGY---------- 175

Query: 115 EMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDL 174
                 + CG   +A  L  ++      G+ E+ R              +V   T ++  
Sbjct: 176 ------WKCGNEEEASTLFHVM------GDQEISR--------------NVITWTTMITG 209

Query: 175 YSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG-VKPTRVT 233
           ++K  +   A   F++M  R+ VSW AM+SG       +  I LF  M   G V+P   T
Sbjct: 210 HAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETT 269

Query: 234 LTIVLLACAELRDLRNGKAI-HGYAYCCGFDFDHHLSAALMHMYCECT--EALHP----- 285
              V+ +C+ L D    ++I        GF  ++ +  AL+ M+ +C   EA H      
Sbjct: 270 WVTVISSCSSLGDPCLSESIVRKLDDTVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQL 329

Query: 286 --------------------------ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
                                     AR +F++   +D V W+S+I GY+Q+G+  +A+K
Sbjct: 330 GVYKYRSSVPWNAMISAYARVGDLPSARHLFDKMPQRDTVSWNSMIAGYTQNGESVKAIK 389

Query: 320 LFSRM-RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMY 378
           LF  M   E  +P+ VT++++ S+C     L  G      + +  +   +S+ N+L++MY
Sbjct: 390 LFEEMISSEDSKPDEVTMVSVFSACGHLGELGLGNWAVSILKENHIQISISVYNSLISMY 449

Query: 379 SKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
           S+CGS+  +  IF EMA RD VS+ TLISG+  HG+G E+++L L+M+E G+EPD IT +
Sbjct: 450 SRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLLKMKEDGIEPDRITYI 509

Query: 439 AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPM 498
           AIL+AC+HAGL+ E + LF ++         ++HYAC +D+LG++G++E+A K++ +MPM
Sbjct: 510 AILTACSHAGLLGEGQRLFESIKFPD-----VDHYACMIDMLGRAGRLEEAMKLIQSMPM 564

Query: 499 KPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEV 558
           +P   I  SL++A  IH ++E+ E+ A +L + EP N+ NY LLS + + +G W   ++V
Sbjct: 565 EPHAGIYGSLLNATSIHKQVELGELAAAKLFKVEPHNSGNYVLLSNIYASAGRWKDGDKV 624

Query: 559 WRVMRAKGLSKSYGFSRIEN 578
              MR +G+ K+ G S +E+
Sbjct: 625 RDTMRKQGVKKTTGLSWLEH 644



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 152/355 (42%), Gaps = 72/355 (20%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACA------------------------YAQTH 43
           E+T+ L+   L P  +  +     +VI +C+                        Y    
Sbjct: 248 EETIRLFNDMLSPGNVQPDETTWVTVISSCSSLGDPCLSESIVRKLDDTVGFRPNYFVKT 307

Query: 44  QHFGLQLHCTALKSGSD----------ADPVISNSLISMYAKFSKPESAYQLFDEMPYRD 93
               +   C  L++                V  N++IS YA+     SA  LFD+MP RD
Sbjct: 308 ALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSARHLFDKMPQRD 367

Query: 94  TISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAEL-LAGIISLCSQIGELELGRQIH 152
           T+SWNS+I  +TQNG  V+++++F EM         E+ +  + S C  +GEL LG    
Sbjct: 368 TVSWNSMIAGYTQNGESVKAIKLFEEMISSEDSKPDEVTMVSVFSACGHLGELGLGNWA- 426

Query: 153 ALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNY 212
             ++ +   ++S+ V  +L+ +YS+C     A+ +F++M  R+ VS+  +ISG  +  + 
Sbjct: 427 VSILKENHIQISISVYNSLISMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHG 486

Query: 213 DTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAAL 272
              I+L   M+ +G++P R+T   +L AC+    L  G+                     
Sbjct: 487 MESIELLLKMKEDGIEPDRITYIAILTACSHAGLLGEGQR-------------------- 526

Query: 273 MHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
                           +FE  K  DV  ++ +I    ++G L EAMKL   M +E
Sbjct: 527 ----------------LFESIKFPDVDHYACMIDMLGRAGRLEEAMKLIQSMPME 565


>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 767

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 194/600 (32%), Positives = 321/600 (53%), Gaps = 36/600 (6%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           QT   +   +    + SN    P+++KACA A       LQ+H    + G  AD   + +
Sbjct: 34  QTALTFFTRMQAHAVPSNNFTFPALLKACA-ALRRLLPTLQVHAYLTRLGLAADRFSAAA 92

Query: 69  LISMYAKFSKPESAYQLFDEMPYR--DTISWNSIINCFTQNGFYVRSLEMFREMYL---- 122
           L+  Y K      A Q+FDEMP    D +SW ++I+ ++ NG    + + F  M      
Sbjct: 93  LVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVDEAFKAFGRMRWMRGW 152

Query: 123 -----CGFVLKAELLAGIISLCS-QIGE--LELGRQIHALVIVDGSFELSVFVSTALLDL 174
                CG  + +  L  ++S C+   G   L  G  +H LV+  G F +S  +  +++ +
Sbjct: 153 DGSECCGVDVVS--LGALVSACAVGCGSNCLRRGSAVHGLVVKYG-FGVSTHLGNSMVHM 209

Query: 175 YSKCHHWLIALRVFEQMVI--RNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG---VKP 229
           YS C     A RVF  + I  R+ VSW ++ISG   +   +  +  F  M  EG   V+P
Sbjct: 210 YSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEAERALRTFEDMVSEGTSAVEP 269

Query: 230 TRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDF----DHHLSAALMHMYCECTEALHP 285
            RVT+  +L +CAEL  +     +H Y            D  +  AL+ M+  C   L  
Sbjct: 270 NRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGN-LAL 328

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE------RIEPNSVTLLAI 339
           AR IF+  + K+VV WS++I GY Q     EA++LF +M +E       ++PN+VTL+++
Sbjct: 329 AREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSV 388

Query: 340 LSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEM--AAR 397
           +++C+R         +H Y +  GL+ D  I +AL++M +KCG I    Q+F+EM  + R
Sbjct: 389 IAACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTR 448

Query: 398 DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLF 457
             VSW+++I   G HG G+ AL+LF EM+  G EP+ IT +++LSAC+HAGLV++ ++ F
Sbjct: 449 TVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGKSCF 508

Query: 458 NNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGR 517
           N++ K+  ++   +HYAC VDLLG++G +++A  V+  MP+K    +  SL++AC +HG 
Sbjct: 509 NSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLAACHLHGN 568

Query: 518 LEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            ++ E++  +++  +  +  ++ LL+ +  ++G W     +   +R  GL K  G S IE
Sbjct: 569 CKLGEIVEKKILSLDSNSVGHHVLLANMYEDAGRWDDVVRMRVELRRSGLRKIPGQSFIE 628



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 147/507 (28%), Positives = 240/507 (47%), Gaps = 65/507 (12%)

Query: 89  MPYRDTISWNSII-NCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELEL 147
           + ++DT  WNS+I    TQN     +L  F  M              ++  C+ +  L  
Sbjct: 13  ISHKDTFHWNSLIAKNATQNP--QTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLP 70

Query: 148 GRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV--IRNEVSWTAMIS- 204
             Q+HA +   G      F + AL+D Y KC H   A +VF++M     + VSWTA+IS 
Sbjct: 71  TLQVHAYLTRLG-LAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISA 129

Query: 205 ----GCIDSQNYDTGIDLFRAMQR----------EGVKPTRVTLTIVLLACA---ELRDL 247
               GC+D        + F+A  R          E      V+L  ++ ACA       L
Sbjct: 130 YSSNGCVD--------EAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCL 181

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV--KDVVIWSSII 305
           R G A+HG     GF    HL  +++HMY  C +     R +F    +  +DVV W+S+I
Sbjct: 182 RRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWR-VFNGIPIEQRDVVSWNSLI 240

Query: 306 RGYSQSGDLSEAMKLFSRMRLE---RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
            G++ +G+   A++ F  M  E    +EPN VT++A+L SC     +     VH YI   
Sbjct: 241 SGFTLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSR 300

Query: 363 GLNF----DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEA 418
             +     DV +  AL++M+++CG++  + +IF+ +  ++ V W+ +I+GY      EEA
Sbjct: 301 HSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEA 360

Query: 419 LQLFLEMQESG------VEPDAITVLAILSACNHAGLVKEAETLFNNVM-----KEKKIA 467
           L+LF +M   G      V+P+A+T++++++AC+  G  + A  +    +     ++ +IA
Sbjct: 361 LRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQDARIA 420

Query: 468 LAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRIL---SSLVSACRIHGRLEVA-EM 523
            A+      +D+  K G IE   +V S   M  STR +   SS++ A  IHG  + A E+
Sbjct: 421 SAL------IDMCAKCGDIEHGRQVFS--EMDESTRTVVSWSSMIGAEGIHGEGKRALEL 472

Query: 524 LAHQLIEAEPENAANYTLLSMVCSESG 550
            +         N   Y  +   CS +G
Sbjct: 473 FSEMRTGGYEPNEITYISVLSACSHAG 499


>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
 gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
          Length = 903

 Score =  301 bits (770), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 174/536 (32%), Positives = 286/536 (53%), Gaps = 14/536 (2%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           +H    +SG +   V+S +L S YA+    + A ++FD    RD +SWN+++  + Q+G 
Sbjct: 247 IHSIVRESGLEQTLVVSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGH 306

Query: 110 YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVST 169
              +  +F  M   G       L    + CS    L  GR IHA  +  G  +  + +  
Sbjct: 307 MSEAALLFARMLHEGIPPSKVTLVNASTGCSS---LRFGRMIHACALEKG-LDRDIVLGN 362

Query: 170 ALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKP 229
           ALLD+Y++C     A  +FE  +  N VSW  MI+G          ++LF+ MQ EG+ P
Sbjct: 363 ALLDMYTRCGSPEEARHLFEG-IPGNAVSWNTMIAGSSQKGQMKRALELFQRMQLEGMAP 421

Query: 230 TRVTLTIVLLACA----ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
            R T   +L A A    E R +  G+ +H     CG+  +  +  A++ MY  C  A+  
Sbjct: 422 VRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCG-AIDE 480

Query: 286 ARIIFERTKVKD---VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSS 342
           A   F+R  ++D   VV W++II   SQ G    A+  F RM L  + PN +T +A+L +
Sbjct: 481 AAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDA 540

Query: 343 CTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA-RDFVS 401
           C   + L+ G+ VH ++  +G+  +V +  AL +MY +CGS+ S+ +IF ++A  RD V 
Sbjct: 541 CAGAAALTEGVIVHDHLRHSGMESNVFVATALASMYGRCGSLESAREIFEKVAVERDVVI 600

Query: 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVM 461
           +  +I+ Y  +G   EAL+LF  MQ+ G  PD  + +++LSAC+H GL  E   +F ++ 
Sbjct: 601 FNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVSVLSACSHGGLADEGWEIFRSMR 660

Query: 462 KEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA 521
           +   IA + +HYAC VD+LG++G + DA +++  M +KP+  +  +L+ ACR +  ++  
Sbjct: 661 QSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLLGACRKYRDVDRG 720

Query: 522 EMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +    + E +P + + Y +LS + + +G W  A EV   M ++GL K  G S IE
Sbjct: 721 RLANSMVRELDPGDESAYVVLSNILAGAGKWDEAAEVRTEMESRGLRKQAGKSWIE 776



 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 150/481 (31%), Positives = 241/481 (50%), Gaps = 29/481 (6%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G ++H   +  G + +  + N L+ +Y K        ++F  +  RD  SW +II  +T+
Sbjct: 48  GRRIHARIVSLGLEEE--LGNHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITAYTE 105

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           +G   R++ MF  M   G    A     ++  C+++G+L  GR IHA  IV+   E    
Sbjct: 106 HGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAW-IVESGLEGKSV 164

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           ++  LL +Y  C     A+ +FE+M  R+ VSW A I+    S + D  ++LF+ MQ EG
Sbjct: 165 LANLLLHIYGSCGCVASAMLLFERME-RDLVSWNAAIAANAQSGDLDMALELFQRMQLEG 223

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           V+P R+TL I L  CA++R  R   AIH      G +    +S AL   Y      L  A
Sbjct: 224 VRPARITLVITLSVCAKIRQAR---AIHSIVRESGLEQTLVVSTALASAYARLGH-LDQA 279

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
           + +F+R   +DVV W++++  Y+Q G +SEA  LF+RM  E I P+ VTL+   + C   
Sbjct: 280 KEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIPPSKVTLVNASTGC--- 336

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
           S L  G  +H   ++ GL+ D+ +GNAL++MY++CGS   +  +F  +   + VSW T+I
Sbjct: 337 SSLRFGRMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFEGIPG-NAVSWNTMI 395

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC----NHAGLVKEAETLFNNVM- 461
           +G    G  + AL+LF  MQ  G+ P   T L +L A       A  + E   L + ++ 
Sbjct: 396 AGSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVS 455

Query: 462 ----KEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILS--SLVSACRIH 515
                E  I  A+      V +    G I++A        M+    ++S  +++S+   H
Sbjct: 456 CGYASEPAIGTAV------VKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQH 509

Query: 516 G 516
           G
Sbjct: 510 G 510



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 100/301 (33%), Positives = 161/301 (53%), Gaps = 8/301 (2%)

Query: 145 LELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMIS 204
           L  GR+IHA ++   S  L   +   LL LY KC        VF ++ +R+E SWT +I+
Sbjct: 45  LSQGRRIHARIV---SLGLEEELGNHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIIT 101

Query: 205 GCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDF 264
              +       I +F  MQ+EGV+   VT   VL ACA L DL  G++IH +    G + 
Sbjct: 102 AYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLEG 161

Query: 265 DHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM 324
              L+  L+H+Y  C   +  A ++FER + +D+V W++ I   +QSGDL  A++LF RM
Sbjct: 162 KSVLANLLLHIYGSCG-CVASAMLLFERME-RDLVSWNAAIAANAQSGDLDMALELFQRM 219

Query: 325 RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSI 384
           +LE + P  +TL+  LS C +   +     +H  + ++GL   + +  AL + Y++ G +
Sbjct: 220 QLEGVRPARITLVITLSVCAK---IRQARAIHSIVRESGLEQTLVVSTALASAYARLGHL 276

Query: 385 TSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
             + ++F+  A RD VSW  ++  Y  HG+  EA  LF  M   G+ P  +T++   + C
Sbjct: 277 DQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIPPSKVTLVNASTGC 336

Query: 445 N 445
           +
Sbjct: 337 S 337



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 111/356 (31%), Positives = 182/356 (51%), Gaps = 17/356 (4%)

Query: 5   HFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPV 64
           H  E  L L+ + LH  G+  +   L +    C+  +    FG  +H  AL+ G D D V
Sbjct: 306 HMSEAAL-LFARMLH-EGIPPSKVTLVNASTGCSSLR----FGRMIHACALEKGLDRDIV 359

Query: 65  ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG 124
           + N+L+ MY +   PE A  LF+ +P  + +SWN++I   +Q G   R+LE+F+ M L G
Sbjct: 360 LGNALLDMYTRCGSPEEARHLFEGIPG-NAVSWNTMIAGSSQKGQMKRALELFQRMQLEG 418

Query: 125 FV-LKA---ELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
              ++A    LL  + S   +   +  GR++H+ ++  G +     + TA++ +Y+ C  
Sbjct: 419 MAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCG-YASEPAIGTAVVKMYASCGA 477

Query: 181 WLIALRVFEQMVIRNE---VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIV 237
              A   F++  + +    VSW A+IS      +    +  FR M   GV P ++T   V
Sbjct: 478 IDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAV 537

Query: 238 LLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV-K 296
           L ACA    L  G  +H +    G + +  ++ AL  MY  C  +L  AR IFE+  V +
Sbjct: 538 LDACAGAAALTEGVIVHDHLRHSGMESNVFVATALASMYGRCG-SLESAREIFEKVAVER 596

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHG 352
           DVVI++++I  YSQ+G   EA+KLF RM+ E   P+  + +++LS+C+       G
Sbjct: 597 DVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVSVLSACSHGGLADEG 652



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/315 (28%), Positives = 149/315 (47%), Gaps = 10/315 (3%)

Query: 234 LTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERT 293
           L  +L A  + R L  G+ IH      G +    L   L+ +Y +C E+L     +F R 
Sbjct: 32  LVRLLRAAGDDRLLSQGRRIHARIVSLGLE--EELGNHLLRLYLKC-ESLGDVEEVFSRL 88

Query: 294 KVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGL 353
           +V+D   W++II  Y++ G    A+ +F RM+ E +  ++VT LA+L +C R   LS G 
Sbjct: 89  EVRDEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGR 148

Query: 354 GVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHG 413
            +H +I+++GL     + N L+++Y  CG + S+  +F  M  RD VSW   I+     G
Sbjct: 149 SIHAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFERM-ERDLVSWNAAIAANAQSG 207

Query: 414 YGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY 473
             + AL+LF  MQ  GV P  IT++  LS C      +   ++      E+ + ++    
Sbjct: 208 DLDMALELFQRMQLEGVRPARITLVITLSVCAKIRQARAIHSIVRESGLEQTLVVSTALA 267

Query: 474 ACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRL-EVAEMLAHQLIEAE 532
           + Y  L    G ++ A +V      +      ++++ A   HG + E A + A  L E  
Sbjct: 268 SAYARL----GHLDQAKEVFDRAAERDVVS-WNAMLGAYAQHGHMSEAALLFARMLHEGI 322

Query: 533 PENAANYTLLSMVCS 547
           P +       S  CS
Sbjct: 323 PPSKVTLVNASTGCS 337


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  301 bits (770), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 145/429 (33%), Positives = 255/429 (59%), Gaps = 2/429 (0%)

Query: 149 RQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCID 208
           RQ+HA   V G  E ++ V+  L+  YS       A  +F+ M +R+ VSW+ M+ G   
Sbjct: 79  RQVHAQASVHGMLE-NIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAK 137

Query: 209 SQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHL 268
             +Y      FR + R G +P   TL  V+ AC +L++L+ G+ IH   Y  G D DH +
Sbjct: 138 VGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFV 197

Query: 269 SAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER 328
            AAL+ MY +C E +  AR +F++ + +D+V W+ +I GY++ G  +E++ LF +MR E 
Sbjct: 198 CAALVDMYVKCRE-IEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEG 256

Query: 329 IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSH 388
           + P+ V ++ ++ +C +   +     +  YI +     DV +G A+++MY+KCG + S+ 
Sbjct: 257 VVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAR 316

Query: 389 QIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG 448
           +IF+ M  ++ +SW+ +I+ YG+HG G +AL LF  M  SG+ PD IT+ ++L AC+HAG
Sbjct: 317 EIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHAG 376

Query: 449 LVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSL 508
           LV+E    F+++ ++  +   ++HY C VDLLG++G++++A K++ +M ++    +  + 
Sbjct: 377 LVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGAF 436

Query: 509 VSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLS 568
           + ACR H  + +AE  A  L+E + +N  +Y LLS + + +G W    ++  +M  + L 
Sbjct: 437 LGACRTHKDVVLAEKAATSLLELQSQNPGHYVLLSNIYANAGRWEDVAKIRDLMSQRRLK 496

Query: 569 KSYGFSRIE 577
           K+ G++ IE
Sbjct: 497 KTPGWTWIE 505



 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 142/429 (33%), Positives = 253/429 (58%), Gaps = 2/429 (0%)

Query: 149  RQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCID 208
            RQ+H    V G  + ++ V+  L+  YS       A  +F+ M +R+ VSW+ M+ G   
Sbjct: 755  RQVHXQASVHGMLQ-NLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAK 813

Query: 209  SQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHL 268
              +Y      FR + R G +P   TL  V+ AC +L++L+ G+ IH   Y  G D DH +
Sbjct: 814  VGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFV 873

Query: 269  SAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER 328
             AAL+ MY +C E +  AR +F++   +D+V W+ +I GY++ G+ +E++ LF +MR E 
Sbjct: 874  CAALVDMYGKCRE-IEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEG 932

Query: 329  IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSH 388
            + P+ V ++ ++ +C +   +     +  YI +     DV +G A+++M++KCG + S+ 
Sbjct: 933  VVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAR 992

Query: 389  QIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG 448
            +IF+ M  ++ +SW+ +I+ YG+HG G +AL LF  M  SG+ P+ IT++++L AC+HAG
Sbjct: 993  EIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAG 1052

Query: 449  LVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSL 508
            LV+E    F+ + ++  +   ++HY C VDLLG++G++++A K++ +M  +    +  + 
Sbjct: 1053 LVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGAF 1112

Query: 509  VSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLS 568
            + ACR H  + +AE  A  L+E +P+N  +Y LLS + + +G W    ++  +M  + L 
Sbjct: 1113 LGACRTHKDVXLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKIRDLMSQRRLK 1172

Query: 569  KSYGFSRIE 577
            K  G++ IE
Sbjct: 1173 KIPGWTWIE 1181



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 133/459 (28%), Positives = 213/459 (46%), Gaps = 43/459 (9%)

Query: 49   QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
            Q+H  A   G   + +++N L+  Y+ +   + AY LFD M  RD++SW+ ++  F + G
Sbjct: 756  QVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVG 815

Query: 109  FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
             Y+     FRE+  CG       L  +I  C  +  L++GR IH +V   G  +L  FV 
Sbjct: 816  DYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG-LDLDHFVC 874

Query: 169  TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
             AL+D+Y KC     A  +F++M  R+ V+WT MI G  +  N +  + LF  M+ EGV 
Sbjct: 875  AALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVV 934

Query: 229  PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAAL--MHMYCECTEALHPA 286
            P +V +  V+ ACA+L  +   + I  Y     F  D  L  A+  MH  C C E+   A
Sbjct: 935  PDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVES---A 991

Query: 287  RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
            R IF+R + K+V+ WS++I  Y   G   +A+ LF  M    I PN +TL+++L +C+  
Sbjct: 992  REIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACS-- 1049

Query: 347  SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTL 405
                     H  +++ GL F                       ++ + + R D   +T +
Sbjct: 1050 ---------HAGLVEEGLRF--------------------FSXMWEDYSVRXDVKHYTCV 1080

Query: 406  ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
            +   G  G  +EAL+L   M     E D     A L AC     V  AE    ++++ + 
Sbjct: 1081 VDLLGRAGRLDEALKLIXSMT---XEKDEGLWGAFLGACRTHKDVXLAEKAATSLLELQP 1137

Query: 466  IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRI 504
                  HY    ++   +G+ ED  K+   M  +   +I
Sbjct: 1138 QNPG--HYILLSNIYANAGRWEDVAKIRDLMSQRRLKKI 1174



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 136/499 (27%), Positives = 227/499 (45%), Gaps = 39/499 (7%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           +   F + +L+L+ +E   S  +    + P    +      +     Q+H  A   G   
Sbjct: 33  IETQFRQTSLNLHNREEESSKFHFLQRLNPKFYISALVNCRNLTQVRQVHAQASVHGMLE 92

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           + V++N LI  Y+ +   + AY LFD M  RD++SW+ ++  F + G Y+     FRE+ 
Sbjct: 93  NIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELI 152

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
            CG       L  +I  C  +  L++GR IH +V   G  +L  FV  AL+D+Y KC   
Sbjct: 153 RCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG-LDLDHFVCAALVDMYVKCREI 211

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             A  +F++M  R+ V+WT MI G  +    +  + LF  M+ EGV P +V +  V+ AC
Sbjct: 212 EDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFAC 271

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A+L  +   + I  Y     F  D  L  A++ MY +C   +  AR IF+R + K+V+ W
Sbjct: 272 AKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCG-CVESAREIFDRMEEKNVISW 330

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           S++I  Y   G   +A+ LF  M    + P+ +TL ++L +C+           H  +++
Sbjct: 331 SAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACS-----------HAGLVE 379

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFHGYGEEALQ 420
            GL F  S                    ++ + + R D   +T ++   G  G  +EAL+
Sbjct: 380 EGLRFFSS--------------------MWEDYSVRTDVKHYTCVVDLLGRAGRLDEALK 419

Query: 421 LFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLL 480
           L   M    +E D     A L AC     V  AE    ++++ +       HY    ++ 
Sbjct: 420 LIKSMT---IEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQSQNPG--HYVLLSNIY 474

Query: 481 GKSGKIEDACKVVSTMPMK 499
             +G+ ED  K+   M  +
Sbjct: 475 ANAGRWEDVAKIRDLMSQR 493



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 148/328 (45%), Gaps = 10/328 (3%)

Query: 16   QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
            +EL   G   +   LP VI+AC   +  Q  G  +H    K G D D  +  +L+ MY K
Sbjct: 825  RELIRCGARPDNYTLPFVIRACRDLKNLQ-MGRLIHHIVYKFGLDLDHFVCAALVDMYGK 883

Query: 76   FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
              + E A  LFD+M  RD ++W  +I  + + G    SL +F +M   G V     +  +
Sbjct: 884  CREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTV 943

Query: 136  ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
            +  C+++G +   R I    I    F+L V + TA++D+++KC     A  +F++M  +N
Sbjct: 944  VFACAKLGAMHKARTIDDY-IQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKN 1002

Query: 196  EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
             +SW+AMI+           +DLF  M R G+ P ++TL  +L AC+    +  G     
Sbjct: 1003 VISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFS 1062

Query: 256  YA---YCCGFDFDHHLSAA-LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQS 311
                 Y    D  H+     L+       EAL   ++I   T  KD  +W + +      
Sbjct: 1063 XMWEDYSVRXDVKHYTCVVDLLGRAGRLDEAL---KLIXSMTXEKDEGLWGAFLGACRTH 1119

Query: 312  GDLSEAMK-LFSRMRLERIEPNSVTLLA 338
             D+  A K   S + L+   P    LL+
Sbjct: 1120 KDVXLAEKAATSLLELQPQNPGHYILLS 1147


>gi|334182623|ref|NP_001185013.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191339|gb|AEE29460.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 928

 Score =  301 bits (770), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 170/528 (32%), Positives = 276/528 (52%), Gaps = 3/528 (0%)

Query: 43  HQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIIN 102
           HQ +G  +H   +K G D+   + N+L+ MYA   +   A  +F +MP +D ISWNS++ 
Sbjct: 259 HQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMA 318

Query: 103 CFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFE 162
            F  +G  + +L +   M   G  +        ++ C      E GR +H LV+V G F 
Sbjct: 319 SFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLF- 377

Query: 163 LSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM 222
            +  +  AL+ +Y K      + RV  QM  R+ V+W A+I G  + ++ D  +  F+ M
Sbjct: 378 YNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTM 437

Query: 223 QREGVKPTRVTLTIVLLACAELRDL-RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTE 281
           + EGV    +T+  VL AC    DL   GK +H Y    GF+ D H+  +L+ MY +C +
Sbjct: 438 RVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGD 497

Query: 282 ALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILS 341
            L  ++ +F     ++++ W++++   +  G   E +KL S+MR   +  +  +    LS
Sbjct: 498 -LSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLS 556

Query: 342 SCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS 401
           +  + + L  G  +H   +K G   D  I NA  +MYSKCG I    ++      R   S
Sbjct: 557 AAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPS 616

Query: 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVM 461
           W  LIS  G HGY EE    F EM E G++P  +T +++L+AC+H GLV +    ++ + 
Sbjct: 617 WNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIA 676

Query: 462 KEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA 521
           ++  +  AIEH  C +DLLG+SG++ +A   +S MPMKP+  +  SL+++C+IHG L+  
Sbjct: 677 RDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRG 736

Query: 522 EMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSK 569
              A  L + EPE+ + Y L S + + +G W   E V + M  K + K
Sbjct: 737 RKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKK 784



 Score =  236 bits (602), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 163/554 (29%), Positives = 274/554 (49%), Gaps = 26/554 (4%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E+ + +YK  +   G+  N   +  VI +C   +  +  G Q+    +KSG ++   + N
Sbjct: 125 EEVIDIYKG-MRGEGVGCNENSMSLVISSCGLLKD-ESLGRQIIGQVVKSGLESKLAVEN 182

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           SLISM       + A  +FD+M  RDTISWNSI   + QNG    S  +F  M      +
Sbjct: 183 SLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEV 242

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
            +  ++ ++S+   +   + GR IH LV+  G F+  V V   LL +Y+     + A  V
Sbjct: 243 NSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMG-FDSVVCVCNTLLRMYAGAGRSVEANLV 301

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F+QM  ++ +SW ++++  ++       + L  +M   G     VT T  L AC      
Sbjct: 302 FKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFF 361

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
             G+ +HG     G  ++  +  AL+ MY +  E     R++ +  + +DVV W+++I G
Sbjct: 362 EKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPR-RDVVAWNALIGG 420

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC-TRQSFLSHGLGVHCYIMKAGLNF 366
           Y++  D  +A+  F  MR+E +  N +T++++LS+C      L  G  +H YI+ AG   
Sbjct: 421 YAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFES 480

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           D  + N+L+ MY+KCG ++SS  +FN +  R+ ++W  +++    HG+GEE L+L  +M+
Sbjct: 481 DEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMR 540

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEH----YACYVDLLGK 482
             GV  D  +    LSA     +++E + L    +K     L  EH    +    D+  K
Sbjct: 541 SFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVK-----LGFEHDSFIFNAAADMYSK 595

Query: 483 SGKIEDACKVVSTMPMKPS-TRILSS---LVSACRIHGRLEVAEMLAHQLIEA--EPENA 536
            G+I +   VV  +P  PS  R L S   L+SA   HG  E      H+++E   +P + 
Sbjct: 596 CGEIGE---VVKMLP--PSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHV 650

Query: 537 ANYTLLSMVCSESG 550
              +LL+  CS  G
Sbjct: 651 TFVSLLT-ACSHGG 663



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 117/412 (28%), Positives = 208/412 (50%), Gaps = 4/412 (0%)

Query: 89  MPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL-EL 147
           MP R+ +SWN++++   + G Y+  +E FR+M   G    + ++A +++ C + G +   
Sbjct: 1   MPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFRE 60

Query: 148 GRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCI 207
           G Q+H  V   G     V+VSTA+L LY        + +VFE+M  RN VSWT+++ G  
Sbjct: 61  GVQVHGFVAKSGLLS-DVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYS 119

Query: 208 DSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
           D    +  ID+++ M+ EGV     ++++V+ +C  L+D   G+ I G     G +    
Sbjct: 120 DKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLA 179

Query: 268 LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
           +  +L+ M        + A  IF++   +D + W+SI   Y+Q+G + E+ ++FS MR  
Sbjct: 180 VENSLISMLGSMGNVDY-ANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRF 238

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
             E NS T+  +LS          G G+H  ++K G +  V + N L+ MY+  G    +
Sbjct: 239 HDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEA 298

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHA 447
           + +F +M  +D +SW +L++ +   G   +AL L   M  SG   + +T  + L+AC   
Sbjct: 299 NLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTP 358

Query: 448 GLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
              ++   L   V+        I   A  V + GK G++ ++ +V+  MP +
Sbjct: 359 DFFEKGRILHGLVVVSGLFYNQIIGNAL-VSMYGKIGEMSESRRVLLQMPRR 409



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/423 (26%), Positives = 214/423 (50%), Gaps = 2/423 (0%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G+  ++ ++ S++ AC  + +    G+Q+H    KSG  +D  +S +++ +Y  +     
Sbjct: 36  GIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSC 95

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           + ++F+EMP R+ +SW S++  ++  G     +++++ M   G       ++ +IS C  
Sbjct: 96  SRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGL 155

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
           + +  LGRQI   V+  G  E  + V  +L+ +     +   A  +F+QM  R+ +SW +
Sbjct: 156 LKDESLGRQIIGQVVKSG-LESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNS 214

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           + +    + + +    +F  M+R   +    T++ +L     +   + G+ IHG     G
Sbjct: 215 IAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMG 274

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
           FD    +   L+ MY     ++  A ++F++   KD++ W+S++  +   G   +A+ L 
Sbjct: 275 FDSVVCVCNTLLRMYAGAGRSVE-ANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLL 333

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
             M       N VT  + L++C    F   G  +H  ++ +GL ++  IGNAL++MY K 
Sbjct: 334 CSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKI 393

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
           G ++ S ++  +M  RD V+W  LI GY      ++AL  F  M+  GV  + ITV+++L
Sbjct: 394 GEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVL 453

Query: 442 SAC 444
           SAC
Sbjct: 454 SAC 456


>gi|297850056|ref|XP_002892909.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338751|gb|EFH69168.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1038

 Score =  300 bits (769), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 169/528 (32%), Positives = 278/528 (52%), Gaps = 3/528 (0%)

Query: 43  HQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIIN 102
           HQ +G  +H   +K G D+   + N+L+ MYA   + E A  +F +MP +D ISWNS++ 
Sbjct: 377 HQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDLISWNSLMA 436

Query: 103 CFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFE 162
            F  +G  + +L +   M   G  +        ++ C      + GR +H LV+V G F+
Sbjct: 437 SFVNDGRSLDALGILCSMIRTGKSVNYVTFTSALAACFSPEFFDKGRILHGLVVVSGLFD 496

Query: 163 LSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM 222
             + +  AL+ +Y K      + RV  QM  R+ V+W A+I G  ++++ D  +  F+ +
Sbjct: 497 NQI-IGNALVSMYGKIGGMSTSRRVLLQMPRRDVVAWNALIGGYAENEDPDKALAAFQTL 555

Query: 223 QREGVKPTRVTLTIVLLACAELRDL-RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTE 281
           + EGV    +T+  VL AC    DL   GK +H Y    GF+ D H+  +L+ MY +C +
Sbjct: 556 RVEGVSANYITVVSVLSACLVPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGD 615

Query: 282 ALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILS 341
            L  ++ +F     + ++ W++I+   +  G   E +KL S+MR   +  +  +    LS
Sbjct: 616 -LSSSQDLFNGLDNRSIITWNAILAANAHHGHGEEVLKLVSKMRSFGLSLDQFSFSEGLS 674

Query: 342 SCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS 401
           +  + + L  G  +H   +K G   D  I NA  +MYSKCG I    ++      R   S
Sbjct: 675 AAAKLAVLEEGQQLHGLAVKLGFELDCFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPS 734

Query: 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVM 461
           W  LIS  G HGY EE  + F EM E G++P  +T +++L+AC+H GLV +    ++ + 
Sbjct: 735 WNILISALGRHGYFEEVCETFHEMLEMGIKPGHVTFVSLLTACSHGGLVDQGLAYYDMIA 794

Query: 462 KEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA 521
           K+  +  AIEH  C +DLLG+SG++ +A   +S MPMKP+  +  SL+++C+IH  L+  
Sbjct: 795 KDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHRDLDRG 854

Query: 522 EMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSK 569
              A  L + EPE+ + + L S + + +G W   E V + M  K + K
Sbjct: 855 RKAAENLSKLEPEDDSVFVLSSNMFATTGRWEDVENVRKQMGFKNIKK 902



 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 158/555 (28%), Positives = 275/555 (49%), Gaps = 28/555 (5%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E+ + +YK  +   G+  N   +  VI +C   +  +  G Q+    +KSG ++   + N
Sbjct: 243 EEVIDIYKS-MRGEGVECNENSMSLVISSCGLLKD-ESLGRQIIGQVIKSGLESKLAVEN 300

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           SLISM+      + A  +F+++  RDTISWNSI+  + QNG    S  +F  M      +
Sbjct: 301 SLISMFGNMGNVDYANYIFNQISERDTISWNSIVAAYAQNGHIEESSRIFNLMRRFHDEV 360

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
            +  ++ ++S+   +   + GR IH LV+  G F+  V V   LL +Y+       A  V
Sbjct: 361 NSTTVSTLLSVLGDVDHQKWGRGIHGLVVKMG-FDSVVCVCNTLLRMYAGAGRSEEADLV 419

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F+QM  ++ +SW ++++  ++       + +  +M R G     VT T  L AC      
Sbjct: 420 FKQMPTKDLISWNSLMASFVNDGRSLDALGILCSMIRTGKSVNYVTFTSALAACFSPEFF 479

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
             G+ +HG     G   +  +  AL+ MY +        R++ +  + +DVV W+++I G
Sbjct: 480 DKGRILHGLVVVSGLFDNQIIGNALVSMYGKIGGMSTSRRVLLQMPR-RDVVAWNALIGG 538

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC-TRQSFLSHGLGVHCYIMKAGLNF 366
           Y+++ D  +A+  F  +R+E +  N +T++++LS+C      L  G  +H YI+ AG   
Sbjct: 539 YAENEDPDKALAAFQTLRVEGVSANYITVVSVLSACLVPGDLLERGKPLHAYIVSAGFES 598

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           D  + N+L+ MY+KCG ++SS  +FN +  R  ++W  +++    HG+GEE L+L  +M+
Sbjct: 599 DEHVKNSLITMYAKCGDLSSSQDLFNGLDNRSIITWNAILAANAHHGHGEEVLKLVSKMR 658

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYV-----DLLG 481
             G+  D  +    LSA     +++E + L    +K     L  E   C++     D+  
Sbjct: 659 SFGLSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVK-----LGFE-LDCFIFNAAADMYS 712

Query: 482 KSGKIEDACKVVSTMPMKPS-TRILSS---LVSACRIHGRLEVAEMLAHQLIEA--EPEN 535
           K G+I +   VV  +P  PS  R L S   L+SA   HG  E      H+++E   +P +
Sbjct: 713 KCGEIGE---VVKMLP--PSVNRSLPSWNILISALGRHGYFEEVCETFHEMLEMGIKPGH 767

Query: 536 AANYTLLSMVCSESG 550
               +LL+  CS  G
Sbjct: 768 VTFVSLLT-ACSHGG 781



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 129/459 (28%), Positives = 232/459 (50%), Gaps = 4/459 (0%)

Query: 42  THQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSII 101
           T +  G  LH   +K       + +N+LI+MY KF + + A  LFD+MP R+ +SWN+++
Sbjct: 72  TRETTGRALHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARYLFDKMPVRNEVSWNTMM 131

Query: 102 NCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL-ELGRQIHALVIVDGS 160
           +   + G Y+  +E F++M   G    + ++A +++ C + G +   G Q+H  V   G 
Sbjct: 132 SGIVRVGLYLEGMEFFQKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGL 191

Query: 161 FELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFR 220
               V+VSTA+L LY        + +VFE+M  RN VSWT+++ G  D    +  ID+++
Sbjct: 192 LS-DVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYK 250

Query: 221 AMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECT 280
           +M+ EGV+    ++++V+ +C  L+D   G+ I G     G +    +  +L+ M+    
Sbjct: 251 SMRGEGVECNENSMSLVISSCGLLKDESLGRQIIGQVIKSGLESKLAVENSLISMFGNMG 310

Query: 281 EALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAIL 340
              + A  IF +   +D + W+SI+  Y+Q+G + E+ ++F+ MR    E NS T+  +L
Sbjct: 311 NVDY-ANYIFNQISERDTISWNSIVAAYAQNGHIEESSRIFNLMRRFHDEVNSTTVSTLL 369

Query: 341 SSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFV 400
           S          G G+H  ++K G +  V + N L+ MY+  G    +  +F +M  +D +
Sbjct: 370 SVLGDVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDLI 429

Query: 401 SWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNV 460
           SW +L++ +   G   +AL +   M  +G   + +T  + L+AC       +   L   V
Sbjct: 430 SWNSLMASFVNDGRSLDALGILCSMIRTGKSVNYVTFTSALAACFSPEFFDKGRILHGLV 489

Query: 461 MKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           +        I   A  V + GK G +  + +V+  MP +
Sbjct: 490 VVSGLFDNQIIGNA-LVSMYGKIGGMSTSRRVLLQMPRR 527



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 110/429 (25%), Positives = 219/429 (51%), Gaps = 2/429 (0%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           Q++   G+  ++ ++ S++ AC  + +    G+Q+H    KSG  +D  +S +++ +Y  
Sbjct: 148 QKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGV 207

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
           +     + ++F+EMP R+ +SW S++  ++  G     +++++ M   G       ++ +
Sbjct: 208 YGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKSMRGEGVECNENSMSLV 267

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           IS C  + +  LGRQI   VI  G  E  + V  +L+ ++    +   A  +F Q+  R+
Sbjct: 268 ISSCGLLKDESLGRQIIGQVIKSG-LESKLAVENSLISMFGNMGNVDYANYIFNQISERD 326

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
            +SW ++++    + + +    +F  M+R   +    T++ +L    ++   + G+ IHG
Sbjct: 327 TISWNSIVAAYAQNGHIEESSRIFNLMRRFHDEVNSTTVSTLLSVLGDVDHQKWGRGIHG 386

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
                GFD    +   L+ MY     +   A ++F++   KD++ W+S++  +   G   
Sbjct: 387 LVVKMGFDSVVCVCNTLLRMYAGAGRS-EEADLVFKQMPTKDLISWNSLMASFVNDGRSL 445

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           +A+ +   M       N VT  + L++C    F   G  +H  ++ +GL  +  IGNAL+
Sbjct: 446 DALGILCSMIRTGKSVNYVTFTSALAACFSPEFFDKGRILHGLVVVSGLFDNQIIGNALV 505

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           +MY K G +++S ++  +M  RD V+W  LI GY  +   ++AL  F  ++  GV  + I
Sbjct: 506 SMYGKIGGMSTSRRVLLQMPRRDVVAWNALIGGYAENEDPDKALAAFQTLRVEGVSANYI 565

Query: 436 TVLAILSAC 444
           TV+++LSAC
Sbjct: 566 TVVSVLSAC 574



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 113/408 (27%), Positives = 200/408 (49%), Gaps = 42/408 (10%)

Query: 97  WNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVI 156
           WN  ++CF Q GF                              SQI     GR +HAL  
Sbjct: 56  WNPELSCFDQTGF------------------------------SQITRETTGRALHALC- 84

Query: 157 VDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGI 216
           V G   LSV  +  L+++Y+K      A  +F++M +RNEVSW  M+SG +    Y  G+
Sbjct: 85  VKGLVRLSVLHTNTLINMYTKFGRVKPARYLFDKMPVRNEVSWNTMMSGIVRVGLYLEGM 144

Query: 217 DLFRAMQREGVKPTRVTLTIVLLACAELRDL-RNGKAIHGYAYCCGFDFDHHLSAALMHM 275
           + F+ M   G+KP+   +  ++ AC     + R G  +HG+    G   D ++S A++H+
Sbjct: 145 EFFQKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHL 204

Query: 276 YCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVT 335
           Y      +  +R +FE    ++VV W+S++ GYS  G+  E + ++  MR E +E N  +
Sbjct: 205 Y-GVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKSMRGEGVECNENS 263

Query: 336 LLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA 395
           +  ++SSC      S G  +   ++K+GL   +++ N+L++M+   G++  ++ IFN+++
Sbjct: 264 MSLVISSCGLLKDESLGRQIIGQVIKSGLESKLAVENSLISMFGNMGNVDYANYIFNQIS 323

Query: 396 ARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAET 455
            RD +SW ++++ Y  +G+ EE+ ++F  M+    E ++ TV  +LS        K    
Sbjct: 324 ERDTISWNSIVAAYAQNGHIEESSRIFNLMRRFHDEVNSTTVSTLLSVLGDVDHQKWGRG 383

Query: 456 LFNNVMKEKKIALAIEHYACYVDLL----GKSGKIEDACKVVSTMPMK 499
           +   V+K     +  +   C  + L      +G+ E+A  V   MP K
Sbjct: 384 IHGLVVK-----MGFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTK 426


>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
          Length = 1027

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 170/528 (32%), Positives = 276/528 (52%), Gaps = 3/528 (0%)

Query: 43  HQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIIN 102
           HQ +G  +H   +K G D+   + N+L+ MYA   +   A  +F +MP +D ISWNS++ 
Sbjct: 366 HQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMA 425

Query: 103 CFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFE 162
            F  +G  + +L +   M   G  +        ++ C      E GR +H LV+V G F 
Sbjct: 426 SFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLF- 484

Query: 163 LSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM 222
            +  +  AL+ +Y K      + RV  QM  R+ V+W A+I G  + ++ D  +  F+ M
Sbjct: 485 YNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTM 544

Query: 223 QREGVKPTRVTLTIVLLACAELRDL-RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTE 281
           + EGV    +T+  VL AC    DL   GK +H Y    GF+ D H+  +L+ MY +C +
Sbjct: 545 RVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGD 604

Query: 282 ALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILS 341
            L  ++ +F     ++++ W++++   +  G   E +KL S+MR   +  +  +    LS
Sbjct: 605 -LSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLS 663

Query: 342 SCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS 401
           +  + + L  G  +H   +K G   D  I NA  +MYSKCG I    ++      R   S
Sbjct: 664 AAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPS 723

Query: 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVM 461
           W  LIS  G HGY EE    F EM E G++P  +T +++L+AC+H GLV +    ++ + 
Sbjct: 724 WNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIA 783

Query: 462 KEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA 521
           ++  +  AIEH  C +DLLG+SG++ +A   +S MPMKP+  +  SL+++C+IHG L+  
Sbjct: 784 RDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRG 843

Query: 522 EMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSK 569
              A  L + EPE+ + Y L S + + +G W   E V + M  K + K
Sbjct: 844 RKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKK 891



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 155/518 (29%), Positives = 258/518 (49%), Gaps = 24/518 (4%)

Query: 44  QHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINC 103
           +  G Q+    +KSG ++   + NSLISM       + A  +FD+M  RDTISWNSI   
Sbjct: 266 ESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAA 325

Query: 104 FTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFEL 163
           + QNG    S  +F  M      + +  ++ ++S+   +   + GR IH LV+  G F+ 
Sbjct: 326 YAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMG-FDS 384

Query: 164 SVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQ 223
            V V   LL +Y+     + A  VF+QM  ++ +SW ++++  ++       + L  +M 
Sbjct: 385 VVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMI 444

Query: 224 REGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEAL 283
             G     VT T  L AC        G+ +HG     G  ++  +  AL+ MY +  E  
Sbjct: 445 SSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMS 504

Query: 284 HPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC 343
              R++ +  + +DVV W+++I GY++  D  +A+  F  MR+E +  N +T++++LS+C
Sbjct: 505 ESRRVLLQMPR-RDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSAC 563

Query: 344 -TRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSW 402
                 L  G  +H YI+ AG   D  + N+L+ MY+KCG ++SS  +FN +  R+ ++W
Sbjct: 564 LLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITW 623

Query: 403 TTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462
             +++    HG+GEE L+L  +M+  GV  D  +    LSA     +++E + L    +K
Sbjct: 624 NAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVK 683

Query: 463 EKKIALAIEH----YACYVDLLGKSGKIEDACKVVSTMPMKPS-TRILSS---LVSACRI 514
                L  EH    +    D+  K G+I +   VV  +P  PS  R L S   L+SA   
Sbjct: 684 -----LGFEHDSFIFNAAADMYSKCGEIGE---VVKMLP--PSVNRSLPSWNILISALGR 733

Query: 515 HGRLEVAEMLAHQLIEA--EPENAANYTLLSMVCSESG 550
           HG  E      H+++E   +P +    +LL+  CS  G
Sbjct: 734 HGYFEEVCATFHEMLEMGIKPGHVTFVSLLT-ACSHGG 770



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 121/435 (27%), Positives = 209/435 (48%), Gaps = 29/435 (6%)

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
           +N+LI+MY KF + + A  LFD MP R+ +SWN++++   + G Y+  +E FR+M   G 
Sbjct: 110 TNTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGI 169

Query: 126 VLKAELLAGIISLCSQIGEL-ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
              + ++A +++ C + G +   G Q+H  V   G     V+VSTA+L LY        +
Sbjct: 170 KPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLS-DVYVSTAILHLYGVYGLVSCS 228

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
            +VFE+M  RN VSWT+++ G  D    +  ID++                         
Sbjct: 229 RKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIY------------------------- 263

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
           +D   G+ I G     G +    +  +L+ M        + A  IF++   +D + W+SI
Sbjct: 264 KDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDY-ANYIFDQMSERDTISWNSI 322

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
              Y+Q+G + E+ ++FS MR    E NS T+  +LS          G G+H  ++K G 
Sbjct: 323 AAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGF 382

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
           +  V + N L+ MY+  G    ++ +F +M  +D +SW +L++ +   G   +AL L   
Sbjct: 383 DSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCS 442

Query: 425 MQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSG 484
           M  SG   + +T  + L+AC      ++   L   V+        I   A  V + GK G
Sbjct: 443 MISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNAL-VSMYGKIG 501

Query: 485 KIEDACKVVSTMPMK 499
           ++ ++ +V+  MP +
Sbjct: 502 EMSESRRVLLQMPRR 516



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 106/423 (25%), Positives = 205/423 (48%), Gaps = 27/423 (6%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G+  ++ ++ S++ AC  + +    G+Q+H    KSG  +D  +S +++ +Y  +     
Sbjct: 168 GIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSC 227

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           + ++F+EMP R+ +SW S++  ++  G     ++++++                      
Sbjct: 228 SRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKDE--------------------- 266

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
                LGRQI   V+  G  E  + V  +L+ +     +   A  +F+QM  R+ +SW +
Sbjct: 267 ----SLGRQIIGQVVKSG-LESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNS 321

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           + +    + + +    +F  M+R   +    T++ +L     +   + G+ IHG     G
Sbjct: 322 IAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMG 381

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
           FD    +   L+ MY     ++  A ++F++   KD++ W+S++  +   G   +A+ L 
Sbjct: 382 FDSVVCVCNTLLRMYAGAGRSVE-ANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLL 440

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
             M       N VT  + L++C    F   G  +H  ++ +GL ++  IGNAL++MY K 
Sbjct: 441 CSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKI 500

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
           G ++ S ++  +M  RD V+W  LI GY      ++AL  F  M+  GV  + ITV+++L
Sbjct: 501 GEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVL 560

Query: 442 SAC 444
           SAC
Sbjct: 561 SAC 563



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 109/417 (26%), Positives = 186/417 (44%), Gaps = 67/417 (16%)

Query: 88  EMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELEL 147
           E   R    WN  I+CF Q GF                              SQI     
Sbjct: 61  EKSGRKKNHWNPEISCFDQIGF------------------------------SQITIETT 90

Query: 148 GRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCI 207
           GR +HAL  V G   LSV  +  L+++Y+K      A  +F+ M +RNEVSW  M+SG +
Sbjct: 91  GRAVHALC-VKGLVRLSVLHTNTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIV 149

Query: 208 DSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL-RNGKAIHGYAYCCGFDFDH 266
               Y  G++ FR M   G+KP+   +  ++ AC     + R G  +HG+    G   D 
Sbjct: 150 RVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDV 209

Query: 267 HLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRL 326
           ++S A++H+Y      +  +R +FE    ++VV W+S++ GYS  G+  E + ++    L
Sbjct: 210 YVSTAILHLYG-VYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKDESL 268

Query: 327 ERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITS 386
                                    G  +   ++K+GL   +++ N+L++M    G++  
Sbjct: 269 -------------------------GRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDY 303

Query: 387 SHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH 446
           ++ IF++M+ RD +SW ++ + Y  +G+ EE+ ++F  M+    E ++ TV  +LS   H
Sbjct: 304 ANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGH 363

Query: 447 AGLVKEAETLFNNVMKEKKIALAIEHYACYVDLL----GKSGKIEDACKVVSTMPMK 499
               K    +   V+K     +  +   C  + L      +G+  +A  V   MP K
Sbjct: 364 VDHQKWGRGIHGLVVK-----MGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTK 415



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 104/427 (24%), Positives = 174/427 (40%), Gaps = 57/427 (13%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           Q +   G+ SN   + SV+ AC         G  LH   + +G ++D  + NSLI+MYAK
Sbjct: 542 QTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAK 601

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
                S+  LF+ +  R+ I+WN+++     +G     L++  +M   G  L     +  
Sbjct: 602 CGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEG 661

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           +S  +++  LE G+Q+H L +  G FE   F+  A  D+YSKC      +++    V R+
Sbjct: 662 LSAAAKLAVLEEGQQLHGLAVKLG-FEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRS 720

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
             SW  +IS       ++     F  M   G+KP  VT   +L AC+       G    G
Sbjct: 721 LPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSH-----GGLVDKG 775

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
            AY      D  L  A+ H  C                          +I    +SG L+
Sbjct: 776 LAYYDMIARDFGLEPAIEHCIC--------------------------VIDLLGRSGRLA 809

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF------DVS 369
           EA    S+M +   +PN +   ++L+SC     L  G        KA  N       D S
Sbjct: 810 EAETFISKMPM---KPNDLVWRSLLASCKIHGNLDRG-------RKAAENLSKLEPEDDS 859

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDF-----VSWTTLISGYGFHGYGE----EALQ 420
           +     NM++  G       +  +M  ++       SW  L       G G+    + ++
Sbjct: 860 VYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTME 919

Query: 421 LFLEMQE 427
           ++ ++++
Sbjct: 920 IYAKLED 926


>gi|302782183|ref|XP_002972865.1| hypothetical protein SELMODRAFT_51647 [Selaginella moellendorffii]
 gi|300159466|gb|EFJ26086.1| hypothetical protein SELMODRAFT_51647 [Selaginella moellendorffii]
          Length = 597

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 165/505 (32%), Positives = 277/505 (54%), Gaps = 14/505 (2%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G ++H  A+  G ++DP +  ++++MY K      A ++FD++  RD ++W ++I  +TQ
Sbjct: 98  GRKIHELAITVGLESDPAVGTAIVTMYGKSRSLADAKRVFDQLKRRDVVAWTALITAYTQ 157

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           NG    +L+++  M   G          +I  C+++G L++G  IHA +   G  E  + 
Sbjct: 158 NGHCEEALDLYSSMDPDGVAPNQYTFTIVIDACAELGRLDVGIAIHARITAAG-LESWIE 216

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           V+ +L++LY  C     A R+F++M  R+ VSW +MI+    + +    IDL++ M+ +G
Sbjct: 217 VANSLINLYGNCKRLRDAERIFQRMPRRSSVSWNSMIAAYAHNGHPGDAIDLYKRMRGDG 276

Query: 227 -VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
            VK   VT   VL AC    DL  G++IH  A   G      L++A + MY  C  ++  
Sbjct: 277 SVKLDPVTFVNVLGACYSQEDLAAGRSIHRDAIARGLGSHLVLASAAVSMYGRCG-SVEE 335

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER-IEPNSVTLLAILSSCT 344
           +   FER ++KD V WS++I   +Q+G+ S A+  + RM       PN  T +++L +C 
Sbjct: 336 SMATFERMEIKDGVAWSAVIAALAQNGESSSALHFYRRMIWSSSARPNEATFISVLEAC- 394

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR------- 397
             SF   G+ +H +I+ +G+     I  A+ NMY+KCG +  + +IF+ M A        
Sbjct: 395 --SFADEGIKIHQHIVDSGIVHSTMISTAIFNMYAKCGRLDRAREIFSSMRASRGSFQSA 452

Query: 398 DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLF 457
           + VSW  +IS    HG  +EAL+LF EM+  G +P  I  ++IL  C+H+G +++    F
Sbjct: 453 NDVSWMNMISALARHGSIDEALELFREMRLEGGKPSEIVFISILHGCSHSGTMEQGLGHF 512

Query: 458 NNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGR 517
             ++++  +A  +EHY C +DLLG+ G ++ A  +V  MP +P  R  S+ + +CR+H  
Sbjct: 513 LAMIQDHGLAPRVEHYGCLIDLLGRGGHLDLAQDLVDQMPFEPDARAWSNFLGSCRLHSD 572

Query: 518 LEVAEMLAHQLIEAEPENAANYTLL 542
            + AE  A ++ E EPE AA Y  L
Sbjct: 573 RDRAEAAAIRVFELEPEKAAIYVSL 597



 Score =  211 bits (538), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 150/520 (28%), Positives = 255/520 (49%), Gaps = 34/520 (6%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           LHC   + G  +   +SN ++ MY K    + A+ +F  +  R+  SWN II  F QNG 
Sbjct: 1   LHCWIRERGHGSSTYVSNMIVQMYGKCGSVDDAWIVFSSIQARNVFSWNMIIAAFAQNGH 60

Query: 110 YVRSLEMFREMYLCGFVLKAELLAGIISL-------CSQIGELELGRQIHALVIVDGSFE 162
             RS+ +F  M      ++ E   GII           ++  L  GR+IH L I  G  E
Sbjct: 61  PERSVALFWRM------IREE--PGIIPTRITFLHALEKLKNLAEGRKIHELAITVG-LE 111

Query: 163 LSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM 222
               V TA++ +Y K      A RVF+Q+  R+ V+WTA+I+    + + +  +DL+ +M
Sbjct: 112 SDPAVGTAIVTMYGKSRSLADAKRVFDQLKRRDVVAWTALITAYTQNGHCEEALDLYSSM 171

Query: 223 QREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEA 282
             +GV P + T TIV+ ACAEL  L  G AIH      G +    ++ +L+++Y  C   
Sbjct: 172 DPDGVAPNQYTFTIVIDACAELGRLDVGIAIHARITAAGLESWIEVANSLINLYGNCKR- 230

Query: 283 LHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE-RIEPNSVTLLAILS 341
           L  A  IF+R   +  V W+S+I  Y+ +G   +A+ L+ RMR +  ++ + VT + +L 
Sbjct: 231 LRDAERIFQRMPRRSSVSWNSMIAAYAHNGHPGDAIDLYKRMRGDGSVKLDPVTFVNVLG 290

Query: 342 SCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS 401
           +C  Q  L+ G  +H   +  GL   + + +A ++MY +CGS+  S   F  M  +D V+
Sbjct: 291 ACYSQEDLAAGRSIHRDAIARGLGSHLVLASAAVSMYGRCGSVEESMATFERMEIKDGVA 350

Query: 402 WTTLISGYGFHGYGEEALQLFLEM-QESGVEPDAITVLAILSACNHA--GLVKEAETLFN 458
           W+ +I+    +G    AL  +  M   S   P+  T +++L AC+ A  G+      + +
Sbjct: 351 WSAVIAALAQNGESSSALHFYRRMIWSSSARPNEATFISVLEACSFADEGIKIHQHIVDS 410

Query: 459 NVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK----PSTRILS--SLVSAC 512
            ++    I+ AI       ++  K G+++ A ++ S+M        S   +S  +++SA 
Sbjct: 411 GIVHSTMISTAI------FNMYAKCGRLDRAREIFSSMRASRGSFQSANDVSWMNMISAL 464

Query: 513 RIHGRLEVA-EMLAHQLIEAEPENAANYTLLSMVCSESGN 551
             HG ++ A E+     +E    +   +  +   CS SG 
Sbjct: 465 ARHGSIDEALELFREMRLEGGKPSEIVFISILHGCSHSGT 504



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 121/276 (43%), Gaps = 16/276 (5%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
             + LYK+      +  +     +V+ AC Y+Q     G  +H  A+  G  +  V++++
Sbjct: 264 DAIDLYKRMRGDGSVKLDPVTFVNVLGAC-YSQEDLAAGRSIHRDAIARGLGSHLVLASA 322

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
            +SMY +    E +   F+ M  +D ++W+++I    QNG    +L  +R M        
Sbjct: 323 AVSMYGRCGSVEESMATFERMEIKDGVAWSAVIAALAQNGESSSALHFYRRMIWSSSARP 382

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
            E  A  IS+       + G +IH   IVD     S  +STA+ ++Y+KC     A  +F
Sbjct: 383 NE--ATFISVLEACSFADEGIKIHQH-IVDSGIVHSTMISTAIFNMYAKCGRLDRAREIF 439

Query: 189 EQMVIR-------NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             M          N+VSW  MIS      + D  ++LFR M+ EG KP+ +    +L  C
Sbjct: 440 SSMRASRGSFQSANDVSWMNMISALARHGSIDEALELFREMRLEGGKPSEIVFISILHGC 499

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYC 277
           +      +G    G  +      DH L+  + H  C
Sbjct: 500 SH-----SGTMEQGLGHFLAMIQDHGLAPRVEHYGC 530


>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 937

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 170/528 (32%), Positives = 276/528 (52%), Gaps = 3/528 (0%)

Query: 43  HQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIIN 102
           HQ +G  +H   +K G D+   + N+L+ MYA   +   A  +F +MP +D ISWNS++ 
Sbjct: 276 HQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMA 335

Query: 103 CFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFE 162
            F  +G  + +L +   M   G  +        ++ C      E GR +H LV+V G F 
Sbjct: 336 SFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLF- 394

Query: 163 LSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM 222
            +  +  AL+ +Y K      + RV  QM  R+ V+W A+I G  + ++ D  +  F+ M
Sbjct: 395 YNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTM 454

Query: 223 QREGVKPTRVTLTIVLLACAELRDL-RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTE 281
           + EGV    +T+  VL AC    DL   GK +H Y    GF+ D H+  +L+ MY +C +
Sbjct: 455 RVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGD 514

Query: 282 ALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILS 341
            L  ++ +F     ++++ W++++   +  G   E +KL S+MR   +  +  +    LS
Sbjct: 515 -LSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLS 573

Query: 342 SCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS 401
           +  + + L  G  +H   +K G   D  I NA  +MYSKCG I    ++      R   S
Sbjct: 574 AAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPS 633

Query: 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVM 461
           W  LIS  G HGY EE    F EM E G++P  +T +++L+AC+H GLV +    ++ + 
Sbjct: 634 WNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIA 693

Query: 462 KEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA 521
           ++  +  AIEH  C +DLLG+SG++ +A   +S MPMKP+  +  SL+++C+IHG L+  
Sbjct: 694 RDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRG 753

Query: 522 EMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSK 569
              A  L + EPE+ + Y L S + + +G W   E V + M  K + K
Sbjct: 754 RKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKK 801



 Score =  236 bits (601), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 163/554 (29%), Positives = 274/554 (49%), Gaps = 26/554 (4%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E+ + +YK  +   G+  N   +  VI +C   +  +  G Q+    +KSG ++   + N
Sbjct: 142 EEVIDIYKG-MRGEGVGCNENSMSLVISSCGLLKD-ESLGRQIIGQVVKSGLESKLAVEN 199

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           SLISM       + A  +FD+M  RDTISWNSI   + QNG    S  +F  M      +
Sbjct: 200 SLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEV 259

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
            +  ++ ++S+   +   + GR IH LV+  G F+  V V   LL +Y+     + A  V
Sbjct: 260 NSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMG-FDSVVCVCNTLLRMYAGAGRSVEANLV 318

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F+QM  ++ +SW ++++  ++       + L  +M   G     VT T  L AC      
Sbjct: 319 FKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFF 378

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
             G+ +HG     G  ++  +  AL+ MY +  E     R++ +  + +DVV W+++I G
Sbjct: 379 EKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPR-RDVVAWNALIGG 437

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC-TRQSFLSHGLGVHCYIMKAGLNF 366
           Y++  D  +A+  F  MR+E +  N +T++++LS+C      L  G  +H YI+ AG   
Sbjct: 438 YAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFES 497

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           D  + N+L+ MY+KCG ++SS  +FN +  R+ ++W  +++    HG+GEE L+L  +M+
Sbjct: 498 DEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMR 557

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEH----YACYVDLLGK 482
             GV  D  +    LSA     +++E + L    +K     L  EH    +    D+  K
Sbjct: 558 SFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVK-----LGFEHDSFIFNAAADMYSK 612

Query: 483 SGKIEDACKVVSTMPMKPS-TRILSS---LVSACRIHGRLEVAEMLAHQLIEA--EPENA 536
            G+I +   VV  +P  PS  R L S   L+SA   HG  E      H+++E   +P + 
Sbjct: 613 CGEIGE---VVKMLP--PSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHV 667

Query: 537 ANYTLLSMVCSESG 550
              +LL+  CS  G
Sbjct: 668 TFVSLLT-ACSHGG 680



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 125/429 (29%), Positives = 218/429 (50%), Gaps = 4/429 (0%)

Query: 72  MYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAEL 131
           MY KF + + A  LFD MP R+ +SWN++++   + G Y+  +E FR+M   G    + +
Sbjct: 1   MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFV 60

Query: 132 LAGIISLCSQIGEL-ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQ 190
           +A +++ C + G +   G Q+H  V   G     V+VSTA+L LY        + +VFE+
Sbjct: 61  IASLVTACGRSGSMFREGVQVHGFVAKSGLLS-DVYVSTAILHLYGVYGLVSCSRKVFEE 119

Query: 191 MVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNG 250
           M  RN VSWT+++ G  D    +  ID+++ M+ EGV     ++++V+ +C  L+D   G
Sbjct: 120 MPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLG 179

Query: 251 KAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQ 310
           + I G     G +    +  +L+ M        + A  IF++   +D + W+SI   Y+Q
Sbjct: 180 RQIIGQVVKSGLESKLAVENSLISMLGSMGNVDY-ANYIFDQMSERDTISWNSIAAAYAQ 238

Query: 311 SGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSI 370
           +G + E+ ++FS MR    E NS T+  +LS          G G+H  ++K G +  V +
Sbjct: 239 NGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCV 298

Query: 371 GNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV 430
            N L+ MY+  G    ++ +F +M  +D +SW +L++ +   G   +AL L   M  SG 
Sbjct: 299 CNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGK 358

Query: 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDAC 490
             + +T  + L+AC      ++   L   V+        I   A  V + GK G++ ++ 
Sbjct: 359 SVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNA-LVSMYGKIGEMSESR 417

Query: 491 KVVSTMPMK 499
           +V+  MP +
Sbjct: 418 RVLLQMPRR 426



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/423 (26%), Positives = 214/423 (50%), Gaps = 2/423 (0%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G+  ++ ++ S++ AC  + +    G+Q+H    KSG  +D  +S +++ +Y  +     
Sbjct: 53  GIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSC 112

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           + ++F+EMP R+ +SW S++  ++  G     +++++ M   G       ++ +IS C  
Sbjct: 113 SRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGL 172

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
           + +  LGRQI   V+  G  E  + V  +L+ +     +   A  +F+QM  R+ +SW +
Sbjct: 173 LKDESLGRQIIGQVVKSG-LESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNS 231

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           + +    + + +    +F  M+R   +    T++ +L     +   + G+ IHG     G
Sbjct: 232 IAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMG 291

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
           FD    +   L+ MY     ++  A ++F++   KD++ W+S++  +   G   +A+ L 
Sbjct: 292 FDSVVCVCNTLLRMYAGAGRSVE-ANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLL 350

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
             M       N VT  + L++C    F   G  +H  ++ +GL ++  IGNAL++MY K 
Sbjct: 351 CSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKI 410

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
           G ++ S ++  +M  RD V+W  LI GY      ++AL  F  M+  GV  + ITV+++L
Sbjct: 411 GEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVL 470

Query: 442 SAC 444
           SAC
Sbjct: 471 SAC 473


>gi|242032375|ref|XP_002463582.1| hypothetical protein SORBIDRAFT_01g002460 [Sorghum bicolor]
 gi|241917436|gb|EER90580.1| hypothetical protein SORBIDRAFT_01g002460 [Sorghum bicolor]
          Length = 610

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 167/508 (32%), Positives = 280/508 (55%), Gaps = 5/508 (0%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPY 91
           +++K CA A+     G  +H      G  ++ + + +L +MY K  +P  A ++FD MP 
Sbjct: 64  ALLKLCA-ARADLATGRAVHAQLTARGLASESLAATALANMYFKCRRPVDARRVFDRMPA 122

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMY--LCGFVLKAELLAGIISLCSQIGELELGR 149
           RD ++WN+++  + +NG    ++E    M     G    +  L  ++  C+    L   R
Sbjct: 123 RDRVAWNALVAGYARNGLPALAMEAVVRMQGEEGGEQPDSITLVSVLPACADARVLGACR 182

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
           ++HA  +  G  EL V VSTA+LD Y KC     A  VF+ M +RN VSW AMI G  ++
Sbjct: 183 EVHAFALRAGLDEL-VNVSTAVLDAYCKCGAVEAARAVFDWMPVRNSVSWNAMIDGYAEN 241

Query: 210 QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS 269
            N    + LF  M +EGV  T   +   L AC EL  L   + +H      G   +  + 
Sbjct: 242 GNASEALALFWRMVQEGVDVTDAAVLAALQACRELGCLDEARRVHELLVRVGLKSNVSVM 301

Query: 270 AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
            AL+  Y +C  A   A    E    K  + W+++I G++Q+G   +A +LF+RM+LE +
Sbjct: 302 NALITTYSKCKRADLAAHAFNELGIKKTRISWNAMILGFTQNGCSEDAERLFARMQLENV 361

Query: 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
           +P+S TL++++ +    S       +H Y ++  L+ D+ +  AL++MYSKCG +T + +
Sbjct: 362 KPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDIYVLTALIDMYSKCGRVTIARK 421

Query: 390 IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL 449
           +F+    R  ++W  +I GYG HG+G+ A++LF EM+ +G  P+  T L++L+AC+HAGL
Sbjct: 422 LFDSARDRHVITWNAMIHGYGSHGFGQVAVELFEEMKGTGSLPNETTFLSVLAACSHAGL 481

Query: 450 VKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLV 509
           V E    F + MK+  +   +EHY   VDLLG++GK+++A   +  MP++P   +  +++
Sbjct: 482 VDEGRKYFAS-MKDYGLEPGMEHYGTLVDLLGRAGKVDEAWSFIQNMPIEPGISVYGAML 540

Query: 510 SACRIHGRLEVAEMLAHQLIEAEPENAA 537
            AC++H  +E+AE  A ++ E  PE  +
Sbjct: 541 GACKLHKNVELAEESAQKIFELGPEEGS 568



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 128/231 (55%), Gaps = 3/231 (1%)

Query: 228 KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPAR 287
           +P   T T +L  CA   DL  G+A+H      G   +   + AL +MY +C   +  AR
Sbjct: 56  RPVLRTFTALLKLCAARADLATGRAVHAQLTARGLASESLAATALANMYFKCRRPVD-AR 114

Query: 288 IIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER--IEPNSVTLLAILSSCTR 345
            +F+R   +D V W++++ GY+++G  + AM+   RM+ E    +P+S+TL+++L +C  
Sbjct: 115 RVFDRMPARDRVAWNALVAGYARNGLPALAMEAVVRMQGEEGGEQPDSITLVSVLPACAD 174

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
              L     VH + ++AGL+  V++  A+++ Y KCG++ ++  +F+ M  R+ VSW  +
Sbjct: 175 ARVLGACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDWMPVRNSVSWNAM 234

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETL 456
           I GY  +G   EAL LF  M + GV+     VLA L AC   G + EA  +
Sbjct: 235 IDGYAENGNASEALALFWRMVQEGVDVTDAAVLAALQACRELGCLDEARRV 285



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 3/174 (1%)

Query: 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
            P   T  A+L  C  ++ L+ G  VH  +   GL  +     AL NMY KC     + +
Sbjct: 56  RPVLRTFTALLKLCAARADLATGRAVHAQLTARGLASESLAATALANMYFKCRRPVDARR 115

Query: 390 IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ--ESGVEPDAITVLAILSACNHA 447
           +F+ M ARD V+W  L++GY  +G    A++  + MQ  E G +PD+IT++++L AC  A
Sbjct: 116 VFDRMPARDRVAWNALVAGYARNGLPALAMEAVVRMQGEEGGEQPDSITLVSVLPACADA 175

Query: 448 GLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPS 501
            ++     +    ++     L +      +D   K G +E A  V   MP++ S
Sbjct: 176 RVLGACREVHAFALRAGLDEL-VNVSTAVLDAYCKCGAVEAARAVFDWMPVRNS 228


>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 168/467 (35%), Positives = 259/467 (55%), Gaps = 4/467 (0%)

Query: 113 SLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALL 172
           +LE +  M   G          +   CS +  +E GR  H  VI  G  +    VS +L+
Sbjct: 111 ALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRG-LDEDGHVSHSLI 169

Query: 173 DLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRV 232
            +Y++C     A +VF+++  ++ VSW +MISG    ++    + LFR M   G +P  +
Sbjct: 170 TMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEM 229

Query: 233 TLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFER 292
           +L  VL AC EL DL+ G  +  +        ++ + +AL+HMY +C + L  AR IF+ 
Sbjct: 230 SLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGD-LVSARRIFDS 288

Query: 293 TKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHG 352
            K KD V W+++I GY+Q+G   EA+KLF  MR+    P+ +TL+ ILS+C     L  G
Sbjct: 289 MKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLG 348

Query: 353 LGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFH 412
             V  Y  + G   DV +G AL++MY+KCGS+ ++ ++F  M  ++ VSW  +IS   FH
Sbjct: 349 KQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPKKNEVSWNAMISALAFH 408

Query: 413 GYGEEALQLFLEMQESG--VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAI 470
           G  +EAL LF  M   G  V P+ IT + +LSAC HAGLV E   LF+ +     +   I
Sbjct: 409 GQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKI 468

Query: 471 EHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE 530
           EHY+C VDL  ++G +E+A   V TMP KP   IL +L+ AC+    ++++E +   L+E
Sbjct: 469 EHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGALLGACQKRKNIDISERVMKLLLE 528

Query: 531 AEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            EP N+ NY + S + +    W  +  +  +M+ KG+SK+ G S I+
Sbjct: 529 LEPSNSGNYVISSKLYANLRRWDDSARMRMLMKQKGVSKTPGCSWID 575



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 126/425 (29%), Positives = 212/425 (49%), Gaps = 38/425 (8%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           GL  N    P +  AC+     ++ G   HC+ ++ G D D  +S+SLI+MYA+  K   
Sbjct: 122 GLKPNNLTYPFLFIACSNLLAVEN-GRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGD 180

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A ++FDE+  +D +SWNS+I+ +++      ++ +FREM   GF      L  ++  C +
Sbjct: 181 ARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGE 240

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
           +G+L+LG  +   V V+    L+ F+ +AL+ +Y KC   + A R+F+ M  +++V+W A
Sbjct: 241 LGDLKLGTWVEEFV-VENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNA 299

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           MI+G   +   +  I LF+ M+     P ++TL  +L ACA +  L  GK +  YA   G
Sbjct: 300 MITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERG 359

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
           F  D ++  AL+ MY +C    +  R+ +   K K+ V W+++I   +  G   EA+ LF
Sbjct: 360 FQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPK-KNEVSWNAMISALAFHGQAQEALALF 418

Query: 322 SRMRLE--RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
             M  E   + PN +T + +LS+C           VH     AGL   V  G  L +M S
Sbjct: 419 KSMMNEGGTVSPNDITFVGVLSAC-----------VH-----AGL---VDEGRRLFHMMS 459

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
               +    +            ++ ++  +   G+ EEA    + M E   +PD + + A
Sbjct: 460 SSFGLVPKIE-----------HYSCMVDLFSRAGHLEEAWDFVMTMPE---KPDEVILGA 505

Query: 440 ILSAC 444
           +L AC
Sbjct: 506 LLGAC 510



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/389 (29%), Positives = 200/389 (51%), Gaps = 15/389 (3%)

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
           SL  Q   ++  +QIHA ++ +     S+    + L   +    +  A   F  ++   E
Sbjct: 37  SLLQQCLSIKQLKQIHAQLLTN-----SIHKPNSFLYKIADLKDFAYASVFFSNILDPTE 91

Query: 197 VSWTAMISGCIDSQNYDT-GIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
            S+  MI G   + N  +  ++ +  M+  G+KP  +T   + +AC+ L  + NG+  H 
Sbjct: 92  YSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHC 151

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
                G D D H+S +L+ MY  C + +  AR +F+    KD+V W+S+I GYS+     
Sbjct: 152 SVIRRGLDEDGHVSHSLITMYARCGK-MGDARKVFDEISQKDLVSWNSMISGYSKMRHAG 210

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           EA+ LF  M     +PN ++L+++L +C     L  G  V  ++++  +  +  +G+AL+
Sbjct: 211 EAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALI 270

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           +MY KCG + S+ +IF+ M  +D V+W  +I+GY  +G  EEA++LF +M+ S   PD I
Sbjct: 271 HMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQI 330

Query: 436 TVLAILSACNHAG---LVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKV 492
           T++ ILSAC   G   L K+ E        E+     +      VD+  K G +++A +V
Sbjct: 331 TLIGILSACASIGALDLGKQVEI----YASERGFQDDVYVGTALVDMYAKCGSLDNAFRV 386

Query: 493 VSTMPMKPSTRILSSLVSACRIHGRLEVA 521
              MP K      ++++SA   HG+ + A
Sbjct: 387 FYGMPKKNEVS-WNAMISALAFHGQAQEA 414


>gi|297833228|ref|XP_002884496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330336|gb|EFH60755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 547

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 172/539 (31%), Positives = 292/539 (54%), Gaps = 21/539 (3%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPES-----AYQLFDEMPYRDTISWNSIINC 103
           QLH   +KS    + +  + LI      + PE+     A  +F+ +       WNS+I  
Sbjct: 23  QLHGLMIKSSVIRNVIPLSRLIDFCT--TCPETMNLSYARSVFESIDCPSVYIWNSMIRG 80

Query: 104 FTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFEL 163
           ++ +    ++L  ++EM   G+         ++  CS + +++ G  +H  V+  G FE+
Sbjct: 81  YSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTG-FEV 139

Query: 164 SVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQ 223
           +++VST LL +Y  C      LRVFE +   N V+W ++ISG +++  +   I+ FR MQ
Sbjct: 140 NMYVSTCLLHMYMCCGEVNWGLRVFEDIPKLNVVAWGSLISGFVNNNRFSDAIEAFREMQ 199

Query: 224 REGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC-CGFDFDHHLSAALMHMYCECTEA 282
             GVKP    +  +L+AC    D           YC   F+F+  L+ +L+ MY +C + 
Sbjct: 200 SIGVKPNETIMVDLLVACGRCFD----------PYCQSKFEFNVILATSLIDMYAKCGD- 248

Query: 283 LHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSS 342
           +  AR +F+    +++V W+SII GYSQ+GD  EAM +FS M    I P+ VT  +++ +
Sbjct: 249 MRTARYLFDGMPERNLVSWNSIITGYSQNGDAEEAMCMFSDMLDLGIAPDKVTFFSVIRA 308

Query: 343 CTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSW 402
              Q     G  +H Y+ K G   D +I  AL+NMY+K G+  S+ ++F ++  +D ++W
Sbjct: 309 SMIQGCSQLGQTIHAYVSKTGFVKDAAIVCALVNMYAKTGNAESAKKMFEDLEKKDTIAW 368

Query: 403 TTLISGYGFHGYGEEALQLFLEMQESG-VEPDAITVLAILSACNHAGLVKEAETLFNNVM 461
           T +I G   HG+G +AL +F  MQE G   PD IT L +L AC+H GLV+E +  F  + 
Sbjct: 369 TVVIIGLASHGHGNKALSIFQRMQEEGNATPDGITYLGVLYACSHIGLVEEGQRYFAEMR 428

Query: 462 KEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA 521
               +   +EHY C VD+L ++G+ E+A ++V TMP++P+  I  +L++ C IH  L++A
Sbjct: 429 DLYGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVQPTANIWGALLNGCEIHENLDLA 488

Query: 522 EMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIENEY 580
           + +   + E+E   +  Y LLS + +++G W   + +   M++K + K    S +E  +
Sbjct: 489 DRIRSMVSESEELGSGIYVLLSNIYAKAGRWADVKLIRESMKSKRVDKLLAHSSVETMF 547



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 105/408 (25%), Positives = 195/408 (47%), Gaps = 25/408 (6%)

Query: 13  LYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISM 72
           ++ QE+   G   +    P V+KAC+  +  Q FG  +H   +K+G + +  +S  L+ M
Sbjct: 92  IFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQ-FGSCVHGFVVKTGFEVNMYVSTCLLHM 150

Query: 73  YAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELL 132
           Y    +     ++F+++P  + ++W S+I+ F  N  +  ++E FREM   G      ++
Sbjct: 151 YMCCGEVNWGLRVFEDIPKLNVVAWGSLISGFVNNNRFSDAIEAFREMQSIGVKPNETIM 210

Query: 133 AGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV 192
             ++  C        GR           FE +V ++T+L+D+Y+KC     A  +F+ M 
Sbjct: 211 VDLLVAC--------GRCFDPY--CQSKFEFNVILATSLIDMYAKCGDMRTARYLFDGMP 260

Query: 193 IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA-----CAELRDL 247
            RN VSW ++I+G   + + +  + +F  M   G+ P +VT   V+ A     C++L   
Sbjct: 261 ERNLVSWNSIITGYSQNGDAEEAMCMFSDMLDLGIAPDKVTFFSVIRASMIQGCSQL--- 317

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
             G+ IH Y    GF  D  +  AL++MY +   A   A+ +FE  + KD + W+ +I G
Sbjct: 318 --GQTIHAYVSKTGFVKDAAIVCALVNMYAKTGNA-ESAKKMFEDLEKKDTIAWTVVIIG 374

Query: 308 YSQSGDLSEAMKLFSRMRLE-RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA-GLN 365
            +  G  ++A+ +F RM+ E    P+ +T L +L +C+    +  G      +    GL 
Sbjct: 375 LASHGHGNKALSIFQRMQEEGNATPDGITYLGVLYACSHIGLVEEGQRYFAEMRDLYGLE 434

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS-WTTLISGYGFH 412
             V     ++++ S+ G    + ++   M  +   + W  L++G   H
Sbjct: 435 PTVEHYGCMVDILSRAGRFEEAERLVKTMPVQPTANIWGALLNGCEIH 482


>gi|242051555|ref|XP_002454923.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
 gi|241926898|gb|EES00043.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
          Length = 741

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 178/558 (31%), Positives = 292/558 (52%), Gaps = 10/558 (1%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           + +++  A +PS   A A A  H        C    S    +  +S +L++MY K     
Sbjct: 124 AAVFTAAARVPS---ASAGAVAHA-----FACKLPSSSGSNNVFVSTALLNMYCKLGAIS 175

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLA-GIISLC 139
            A ++FD+MP+R+ +SW ++++ +        + E+FR M     + K E +A  ++S  
Sbjct: 176 DARRVFDQMPHRNAVSWAAMVSGYATGKCSEEAFELFRLMLQECPLEKNEFVATAVLSAV 235

Query: 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSW 199
           S    L +G Q+H LV+ DG     V V  +L+ +Y+K      A+ VF     RN ++W
Sbjct: 236 SVPLGLLIGVQLHGLVLKDGLVGF-VSVENSLVTMYAKAECMDAAMAVFGSSKERNSITW 294

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
           +AMI+G   +   D    +F  M   G  PT  T   +L A +++  L  GK  HG    
Sbjct: 295 SAMITGYAQNGEADCAATMFLQMHSAGFSPTEFTFVGILNASSDMGALVVGKQAHGLMVK 354

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
            GF+   ++ +AL+ MY +C           +   V DVVIW+++I G+ Q+G+  EA+ 
Sbjct: 355 LGFERQVYVKSALVDMYAKCGCTGDAKDGFHQLYDVDDVVIWTAMITGHVQNGEHEEALM 414

Query: 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           L+SRM  E + P+ +T+ ++L +C   + L  G  +H  I+K G     S+G AL  MYS
Sbjct: 415 LYSRMDKEGVMPSYLTVTSVLRACACLAALEPGKQLHAQILKCGFGLGGSVGTALSTMYS 474

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           KCG++  S  +F  M  RD +SW ++ISG+  HG G +AL LF EM+  G+ PD IT + 
Sbjct: 475 KCGNLEDSMVVFRRMPDRDIISWNSIISGFSQHGRGRDALDLFEEMKLEGIAPDHITFIN 534

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           +L AC+H GLV      F  + K+  +   ++HYAC VD+L ++G++++A   + ++ + 
Sbjct: 535 VLCACSHMGLVDRGWFYFRAMSKDYGLIPKLDHYACIVDILSRAGQLKEAKDFIESITID 594

Query: 500 PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVW 559
             T +   ++ ACR     +V      QL+E   E+++ Y LLS + +    W   E V 
Sbjct: 595 HGTCLWRIVLGACRSLRDFDVGAYAGEQLMELGTEDSSAYILLSNIYAAQRKWNDVERVR 654

Query: 560 RVMRAKGLSKSYGFSRIE 577
            +MR +G+SK  G S +E
Sbjct: 655 HLMRLRGVSKDPGCSWVE 672



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 115/346 (33%), Positives = 186/346 (53%), Gaps = 4/346 (1%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E+   L++  L    L  N  +  +V+ A +        G+QLH   LK G      + N
Sbjct: 206 EEAFELFRLMLQECPLEKNEFVATAVLSAVS-VPLGLLIGVQLHGLVLKDGLVGFVSVEN 264

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           SL++MYAK    ++A  +F     R++I+W+++I  + QNG    +  MF +M+  GF  
Sbjct: 265 SLVTMYAKAECMDAAMAVFGSSKERNSITWSAMITGYAQNGEADCAATMFLQMHSAGFSP 324

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
                 GI++  S +G L +G+Q H L++  G FE  V+V +AL+D+Y+KC     A   
Sbjct: 325 TEFTFVGILNASSDMGALVVGKQAHGLMVKLG-FERQVYVKSALVDMYAKCGCTGDAKDG 383

Query: 188 FEQMV-IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           F Q+  + + V WTAMI+G + +  ++  + L+  M +EGV P+ +T+T VL ACA L  
Sbjct: 384 FHQLYDVDDVVIWTAMITGHVQNGEHEEALMLYSRMDKEGVMPSYLTVTSVLRACACLAA 443

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L  GK +H     CGF     +  AL  MY +C   L  + ++F R   +D++ W+SII 
Sbjct: 444 LEPGKQLHAQILKCGFGLGGSVGTALSTMYSKCGN-LEDSMVVFRRMPDRDIISWNSIIS 502

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHG 352
           G+SQ G   +A+ LF  M+LE I P+ +T + +L +C+    +  G
Sbjct: 503 GFSQHGRGRDALDLFEEMKLEGIAPDHITFINVLCACSHMGLVDRG 548



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 164/566 (28%), Positives = 270/566 (47%), Gaps = 22/566 (3%)

Query: 20  PSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKP 79
           P  L  + A     ++  A +   +  G  LH  ALKSG+ +   +SNSLI+ Y    +P
Sbjct: 6   PPALRMSHAQFIEHLRCAASSVRTRRAGDALHGWALKSGAASHTPVSNSLITFYCSPPRP 65

Query: 80  --ESAYQLFDEMP--YRDTISWNSIINCFTQNGFYVRSLEMFREMYLC--GFVLKAELLA 133
              +A+ +F ++P   RD  SWNS++N  +++   + +L  FR M       +      A
Sbjct: 66  LLGAAFAVFADIPAGLRDVASWNSLLNPLSRHQ-PLAALSHFRSMMSSTDAVLPTPHSFA 124

Query: 134 GIISLCSQIGELELGRQIHALV--IVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM 191
            + +  +++     G   HA    +   S   +VFVSTALL++Y K      A RVF+QM
Sbjct: 125 AVFTAAARVPSASAGAVAHAFACKLPSSSGSNNVFVSTALLNMYCKLGAISDARRVFDQM 184

Query: 192 VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE-GVKPTRVTLTIVLLACAELRDLRNG 250
             RN VSW AM+SG    +  +   +LFR M +E  ++      T VL A +    L  G
Sbjct: 185 PHRNAVSWAAMVSGYATGKCSEEAFELFRLMLQECPLEKNEFVATAVLSAVSVPLGLLIG 244

Query: 251 KAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQ 310
             +HG     G      +  +L+ MY +  E +  A  +F  +K ++ + WS++I GY+Q
Sbjct: 245 VQLHGLVLKDGLVGFVSVENSLVTMYAK-AECMDAAMAVFGSSKERNSITWSAMITGYAQ 303

Query: 311 SGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSI 370
           +G+   A  +F +M      P   T + IL++ +    L  G   H  ++K G    V +
Sbjct: 304 NGEADCAATMFLQMHSAGFSPTEFTFVGILNASSDMGALVVGKQAHGLMVKLGFERQVYV 363

Query: 371 GNALMNMYSKCGSITSSHQIFNEM-AARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
            +AL++MY+KCG    +   F+++    D V WT +I+G+  +G  EEAL L+  M + G
Sbjct: 364 KSALVDMYAKCGCTGDAKDGFHQLYDVDDVVIWTAMITGHVQNGEHEEALMLYSRMDKEG 423

Query: 430 VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
           V P  +TV ++L AC     ++  + L   ++K     L          +  K G +ED+
Sbjct: 424 VMPSYLTVTSVLRACACLAALEPGKQLHAQILK-CGFGLGGSVGTALSTMYSKCGNLEDS 482

Query: 490 CKVVSTMPMKPSTRILS--SLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCS 547
             V   MP +    I+S  S++S    HGR   A  L  ++ + E     + T ++++C+
Sbjct: 483 MVVFRRMPDR---DIISWNSIISGFSQHGRGRDALDLFEEM-KLEGIAPDHITFINVLCA 538

Query: 548 ESGNWLGAEEVWRVMRAKGLSKSYGF 573
            S   L  +  W   RA  +SK YG 
Sbjct: 539 CSHMGL-VDRGWFYFRA--MSKDYGL 561


>gi|242037437|ref|XP_002466113.1| hypothetical protein SORBIDRAFT_01g001570 [Sorghum bicolor]
 gi|241919967|gb|EER93111.1| hypothetical protein SORBIDRAFT_01g001570 [Sorghum bicolor]
          Length = 693

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 175/533 (32%), Positives = 281/533 (52%), Gaps = 11/533 (2%)

Query: 46  FGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT 105
            G Q+H  A+++G  AD  I + LI +Y++     +A ++F  M   D + + S+++   
Sbjct: 128 LGEQVHSLAVRAGFAADAWIGSCLIELYSRCGSMWAAEEVFRRMEAPDVVGYTSLVSALC 187

Query: 106 QNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVI-VDGSFELS 164
           +NG   R++E+  +M   G       +  +++ C ++    +G QIH  ++ V GS   S
Sbjct: 188 RNGDLARAVEVLCQMMRQGLQPNEHTMTSMLAECPRM----IGEQIHGYMLKVMGS--QS 241

Query: 165 VFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR 224
           V+ STAL+D YS+   + +A  VFE +  +N VSW +M+  CI     +  + +F  M  
Sbjct: 242 VYASTALIDFYSRYGDFDMAETVFENLDSKNVVSWCSMMQLCIRDGRLEDALRVFSEMIS 301

Query: 225 EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
           E V+P     +I L AC  +     G+ IH  A  C    D  +S AL+ MY   +  + 
Sbjct: 302 EAVEPNEFAFSIALGACGSVC---LGRQIHCSAIKCNLMTDIRVSNALLSMYGR-SGFVS 357

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
               +  + +  D+V W++ I    Q+G   +A+ L  +M  E   PN     + LSSC 
Sbjct: 358 EVEAVLGKIENPDLVSWTAAISANFQNGFSEKAVALLLQMHSEGFTPNDYAFSSGLSSCA 417

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
             + L  G  +HC  +K G +F V  GNAL+NMYSKCG I S+   F+ M   D +SW +
Sbjct: 418 DLALLDQGRQLHCLALKLGCDFKVCTGNALINMYSKCGQIGSARLAFDVMNLHDVMSWNS 477

Query: 405 LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK 464
           LI G   HG     L+ F EM  SG +PD  T +A+L  CNHAGLVKE ET F  +    
Sbjct: 478 LIHGLAQHGAANLVLEAFSEMCSSGWQPDDSTFIAVLVGCNHAGLVKEGETFFRLMTDRY 537

Query: 465 KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEML 524
            +     HYAC +D+LG++G+ ++A  ++  MP +P   I  +L+++C++H  L++ ++ 
Sbjct: 538 GLTPTPSHYACMIDMLGRNGRFDEALHMIKNMPFEPDVLIWKTLLASCKLHKNLDIGKLA 597

Query: 525 AHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
             +L+E    ++A+Y L+S + +    W  AE V R M   G+ K  G+S IE
Sbjct: 598 TDKLMELSERDSASYVLMSNLYAMHEEWQDAERVRRRMDEIGVKKDAGWSWIE 650



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 111/404 (27%), Positives = 189/404 (46%), Gaps = 11/404 (2%)

Query: 55  LKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSL 114
           L +    D V+    +    K  +   A  LFD MP ++ ++W + I+  T+NG    + 
Sbjct: 34  LGAPPPPDVVLDCKRLDALMKSGRLSDALDLFDRMPRKNVVAWTTAISGCTRNGQPEAAA 93

Query: 115 EMFREMYLCGFVLK--AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALL 172
            MF +M   G      A   A      +  G L LG Q+H+L +  G F    ++ + L+
Sbjct: 94  AMFADMLESGVAANDFACNAALAACAAAGAGALSLGEQVHSLAVRAG-FAADAWIGSCLI 152

Query: 173 DLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRV 232
           +LYS+C     A  VF +M   + V +T+++S    + +    +++   M R+G++P   
Sbjct: 153 ELYSRCGSMWAAEEVFRRMEAPDVVGYTSLVSALCRNGDLARAVEVLCQMMRQGLQPNEH 212

Query: 233 TLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFER 292
           T+T +L  C  +     G+ IHGY          + S AL+  Y    +    A  +FE 
Sbjct: 213 TMTSMLAECPRMI----GEQIHGYMLKVMGSQSVYASTALIDFYSRYGD-FDMAETVFEN 267

Query: 293 TKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHG 352
              K+VV W S+++   + G L +A+++FS M  E +EPN       L +C        G
Sbjct: 268 LDSKNVVSWCSMMQLCIRDGRLEDALRVFSEMISEAVEPNEFAFSIALGACGSVCL---G 324

Query: 353 LGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFH 412
             +HC  +K  L  D+ + NAL++MY + G ++    +  ++   D VSWT  IS    +
Sbjct: 325 RQIHCSAIKCNLMTDIRVSNALLSMYGRSGFVSEVEAVLGKIENPDLVSWTAAISANFQN 384

Query: 413 GYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETL 456
           G+ E+A+ L L+M   G  P+     + LS+C    L+ +   L
Sbjct: 385 GFSEKAVALLLQMHSEGFTPNDYAFSSGLSSCADLALLDQGRQL 428



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 172/369 (46%), Gaps = 16/369 (4%)

Query: 164 SVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQ 223
            V +    LD   K      AL +F++M  +N V+WT  ISGC  +   +    +F  M 
Sbjct: 41  DVVLDCKRLDALMKSGRLSDALDLFDRMPRKNVVAWTTAISGCTRNGQPEAAAAMFADML 100

Query: 224 REGVKPTRVTLTIVLLACAELRDLRN--GKAIHGYAYCCGFDFDHHLSAALMHMYCECTE 281
             GV          L ACA         G+ +H  A   GF  D  + + L+ +Y  C  
Sbjct: 101 ESGVAANDFACNAALAACAAAGAGALSLGEQVHSLAVRAGFAADAWIGSCLIELYSRCG- 159

Query: 282 ALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILS 341
           ++  A  +F R +  DVV ++S++    ++GDL+ A+++  +M  + ++PN  T+ ++L+
Sbjct: 160 SMWAAEEVFRRMEAPDVVGYTSLVSALCRNGDLARAVEVLCQMMRQGLQPNEHTMTSMLA 219

Query: 342 SCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS 401
            C R      G  +H Y++K   +  V    AL++ YS+ G    +  +F  + +++ VS
Sbjct: 220 ECPRMI----GEQIHGYMLKVMGSQSVYASTALIDFYSRYGDFDMAETVFENLDSKNVVS 275

Query: 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKE--AETLFNN 459
           W +++      G  E+AL++F EM    VEP+       L AC    L ++     +  N
Sbjct: 276 WCSMMQLCIRDGRLEDALRVFSEMISEAVEPNEFAFSIALGACGSVCLGRQIHCSAIKCN 335

Query: 460 VMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLE 519
           +M + +++ A+      + + G+SG + +   V+  +   P     ++ +SA   +G  E
Sbjct: 336 LMTDIRVSNAL------LSMYGRSGFVSEVEAVLGKIE-NPDLVSWTAAISANFQNGFSE 388

Query: 520 VAEMLAHQL 528
            A  L  Q+
Sbjct: 389 KAVALLLQM 397


>gi|147805932|emb|CAN74403.1| hypothetical protein VITISV_043633 [Vitis vinifera]
          Length = 841

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 177/583 (30%), Positives = 311/583 (53%), Gaps = 32/583 (5%)

Query: 1   MVSKHF----YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALK 56
           M+S ++    Y + L L+ Q L     +    +L +V +ACA   + +  G Q+H  A+K
Sbjct: 233 MISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAV-QACAELGSLK-LGKQIHQLAIK 290

Query: 57  SGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEM 116
                D  I N+L++MY+     ES++QLF+ +P RD   WNS+I+ +   G +  ++++
Sbjct: 291 FEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMDL 350

Query: 117 FREMYLCGFVLKAELLAGIISLCSQIGE-LELGRQIHALVIVDGSFELSVFVSTALLDLY 175
           F  M   G       +  ++S+C ++   L  G+ +HA VI  G   +   +  ALL +Y
Sbjct: 351 FIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKSG-MRIDASLGNALLSMY 409

Query: 176 SKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLT 235
           ++ +      ++F++M   + +SW  MI     +       +LF  M+   +KP   T+ 
Sbjct: 410 TELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFERMRESEIKPNSYTII 469

Query: 236 IVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV 295
            +L AC ++  L  G++IHGY      + +  L  AL  MY  C +    AR +FE    
Sbjct: 470 SILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTALADMYMNCGDE-ATARDLFEGCPD 528

Query: 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV 355
           +D++ W+++I                      + EPNSVT++ +LSS T  + L  G  +
Sbjct: 529 RDLISWNAMI---------------------XKAEPNSVTIINVLSSFTHLATLPQGQSL 567

Query: 356 HCYIMKAG--LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHG 413
           H Y+ + G  L  D+S+ NA + MY++CGS+ S+  IF  +  R+ +SW  +I+GYG +G
Sbjct: 568 HAYVTRRGFSLGLDLSLANAFITMYARCGSLQSAENIFKTLPKRNIISWNAMIAGYGMNG 627

Query: 414 YGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY 473
            G +A+  F +M E G  P+ +T +++LSAC+H+G ++    LF++++++  +   + HY
Sbjct: 628 RGSDAMLAFSQMLEDGFRPNGVTFVSVLSACSHSGFIEMGLQLFHSMVQDFNVTPELVHY 687

Query: 474 ACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEP 533
           +C VDLL + G I++A + + +MP++P   +  +L+S+CR +   + A+ +  +L + EP
Sbjct: 688 SCIVDLLARGGCIDEAREFIDSMPIEPDASVWRALLSSCRAYSDAKQAKTIFEKLDKLEP 747

Query: 534 ENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
            NA NY LLS V + +G WL    +   ++ KGL K  G S I
Sbjct: 748 MNAGNYVLLSNVYATAGLWLEVRRIRTWLKEKGLRKPPGISWI 790



 Score =  234 bits (598), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 143/447 (31%), Positives = 238/447 (53%), Gaps = 4/447 (0%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           ++   G+  N   LP V+KACA AQ     G  +H +   +    D  +  +++  Y K 
Sbjct: 50  QMESLGVLPNNTTLPLVLKACA-AQNAVERGKSIHRSIQGTDLMDDVRVGTAVVDFYCKC 108

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
              E A  +FD M  RD + WN+++  +   G Y  ++ + REM        +  +  ++
Sbjct: 109 GFVEDARCVFDAMSDRDVVLWNAMVYGYVGWGCYEEAMLLVREMGRENLRPNSRTMVALL 168

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
             C    EL LGR +H   + +G F+ +  V+TAL+  Y +    ++ L +F+ MV+RN 
Sbjct: 169 LACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLRFDMRVLPL-LFDLMVVRNI 227

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           VSW AMISG  D  +Y   ++LF  M  + VK   VT+ + + ACAEL  L+ GK IH  
Sbjct: 228 VSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKLGKQIHQL 287

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
           A    F  D ++  AL++MY     +L  +  +FE    +D  +W+S+I  Y+  G   E
Sbjct: 288 AIKFEFVEDLYILNALLNMYSN-NGSLESSHQLFESVPNRDAPLWNSMISAYAAFGCHEE 346

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTR-QSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           AM LF RM+ E ++ +  T++ +LS C    S L  G  +H +++K+G+  D S+GNAL+
Sbjct: 347 AMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKSGMRIDASLGNALL 406

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           +MY++   + S  +IF+ M   D +SW T+I     +    +A +LF  M+ES ++P++ 
Sbjct: 407 SMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFERMRESEIKPNSY 466

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMK 462
           T+++IL+AC     +    ++   VMK
Sbjct: 467 TIISILAACEDVTCLDFGRSIHGYVMK 493



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 124/374 (33%), Positives = 195/374 (52%), Gaps = 7/374 (1%)

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQI 151
           +D   WNS+I            L  + +M   G +     L  ++  C+    +E G+ I
Sbjct: 23  KDPKHWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERGKSI 82

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQN 211
           H   I        V V TA++D Y KC     A  VF+ M  R+ V W AM+ G +    
Sbjct: 83  HR-SIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGWGC 141

Query: 212 YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG-FDFDHHLSA 270
           Y+  + L R M RE ++P   T+  +LLAC    +LR G+ +HGY    G FD + H++ 
Sbjct: 142 YEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVAT 201

Query: 271 ALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE 330
           AL+  Y      + P  ++F+   V+++V W+++I GY   GD  +A++LF +M ++ ++
Sbjct: 202 ALIGFYLRFDMRVLP--LLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVK 259

Query: 331 PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQI 390
            + VT+L  + +C     L  G  +H   +K     D+ I NAL+NMYS  GS+ SSHQ+
Sbjct: 260 FDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQL 319

Query: 391 FNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH--AG 448
           F  +  RD   W ++IS Y   G  EEA+ LF+ MQ  GV+ D  TV+ +LS C    +G
Sbjct: 320 FESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASG 379

Query: 449 LVKEAETLFNNVMK 462
           L+K  ++L  +V+K
Sbjct: 380 LLK-GKSLHAHVIK 392



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 166/324 (51%), Gaps = 7/324 (2%)

Query: 190 QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
           ++ I++   W ++I    + +N    +  +  M+  GV P   TL +VL ACA    +  
Sbjct: 19  KIQIKDPKHWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVER 78

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
           GK+IH          D  +  A++  YC+C   +  AR +F+    +DVV+W++++ GY 
Sbjct: 79  GKSIHRSIQGTDLMDDVRVGTAVVDFYCKCG-FVEDARCVFDAMSDRDVVLWNAMVYGYV 137

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
             G   EAM L   M  E + PNS T++A+L +C   S L  G GVH Y ++ G+ FD +
Sbjct: 138 GWGCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGM-FDSN 196

Query: 370 --IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
             +  AL+  Y +   +     +F+ M  R+ VSW  +ISGY   G   +AL+LF++M  
Sbjct: 197 PHVATALIGFYLRF-DMRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLV 255

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487
             V+ D +T+L  + AC   G +K  + +    +K + +   +      +++   +G +E
Sbjct: 256 DEVKFDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVE-DLYILNALLNMYSNNGSLE 314

Query: 488 DACKVVSTMPMKPSTRILSSLVSA 511
            + ++  ++P + +  + +S++SA
Sbjct: 315 SSHQLFESVPNRDAP-LWNSMISA 337


>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 168/467 (35%), Positives = 259/467 (55%), Gaps = 4/467 (0%)

Query: 113 SLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALL 172
           +LE +  M   G          +   CS +  +E GR  H  VI  G  +    VS +L+
Sbjct: 111 ALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRG-LDEDGHVSHSLI 169

Query: 173 DLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRV 232
            +Y++C     A +VF+++  ++ VSW +MISG    ++    + LFR M   G +P  +
Sbjct: 170 TMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEM 229

Query: 233 TLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFER 292
           +L  VL AC EL DL+ G  +  +        ++ + +AL+HMY +C + L  AR IF+ 
Sbjct: 230 SLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGD-LVSARRIFDS 288

Query: 293 TKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHG 352
            K KD V W+++I GY+Q+G   EA+KLF  MR+    P+ +TL+ ILS+C     L  G
Sbjct: 289 MKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLG 348

Query: 353 LGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFH 412
             V  Y  + G   DV +G AL++MY+KCGS+ ++ ++F  M  ++ VSW  +IS   FH
Sbjct: 349 KQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPNKNEVSWNAMISALAFH 408

Query: 413 GYGEEALQLFLEMQESG--VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAI 470
           G  +EAL LF  M   G  V P+ IT + +LSAC HAGLV E   LF+ +     +   I
Sbjct: 409 GQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKI 468

Query: 471 EHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE 530
           EHY+C VDL  ++G +E+A   V TMP KP   IL +L+ AC+    ++++E +   L+E
Sbjct: 469 EHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGALLGACQKRKNIDISERVMKLLLE 528

Query: 531 AEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            EP N+ NY + S + +    W  +  +  +M+ KG+SK+ G S I+
Sbjct: 529 LEPSNSGNYVISSKLYANLRRWDDSARMRMLMKQKGVSKTPGCSWID 575



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 127/425 (29%), Positives = 212/425 (49%), Gaps = 38/425 (8%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           GL  N    P +  AC+     ++ G   HC+ ++ G D D  +S+SLI+MYA+  K   
Sbjct: 122 GLKPNNLTYPFLFIACSNLLAVEN-GRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGD 180

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A ++FDE+  +D +SWNS+I+ +++      ++ +FREM   GF      L  ++  C +
Sbjct: 181 ARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGE 240

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
           +G+L+LG  +   V V+    L+ F+ +AL+ +Y KC   + A R+F+ M  +++V+W A
Sbjct: 241 LGDLKLGTWVEEFV-VENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNA 299

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           MI+G   +   +  I LF+ M+     P ++TL  +L ACA +  L  GK +  YA   G
Sbjct: 300 MITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERG 359

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
           F  D ++  AL+ MY +C  +L  A  +F     K+ V W+++I   +  G   EA+ LF
Sbjct: 360 FQDDVYVGTALVDMYAKCG-SLDNAFRVFYGMPNKNEVSWNAMISALAFHGQAQEALALF 418

Query: 322 SRMRLE--RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
             M  E   + PN +T + +LS+C           VH     AGL   V  G  L +M S
Sbjct: 419 KSMMNEGGTVSPNDITFVGVLSAC-----------VH-----AGL---VDEGRRLFHMMS 459

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
               +    +            ++ ++  +   G+ EEA    + M E   +PD + + A
Sbjct: 460 SSFGLVPKIE-----------HYSCMVDLFSRAGHLEEAWDFVMTMPE---KPDEVILGA 505

Query: 440 ILSAC 444
           +L AC
Sbjct: 506 LLGAC 510



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 116/389 (29%), Positives = 200/389 (51%), Gaps = 15/389 (3%)

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
           SL  Q   ++  +QIHA ++ +     S+    + L   +    +  A   F  ++   E
Sbjct: 37  SLLQQCLSIKQLKQIHAQLLTN-----SIHKPNSFLYKIADLKDFAYASVFFSNILDPTE 91

Query: 197 VSWTAMISGCIDSQNYDT-GIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
            S+  MI G   + N  +  ++ +  M+  G+KP  +T   + +AC+ L  + NG+  H 
Sbjct: 92  YSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHC 151

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
                G D D H+S +L+ MY  C + +  AR +F+    KD+V W+S+I GYS+     
Sbjct: 152 SVIRRGLDEDGHVSHSLITMYARCGK-MGDARKVFDEISQKDLVSWNSMISGYSKMRHAG 210

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           EA+ LF  M     +PN ++L+++L +C     L  G  V  ++++  +  +  +G+AL+
Sbjct: 211 EAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALI 270

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           +MY KCG + S+ +IF+ M  +D V+W  +I+GY  +G  EEA++LF +M+ S   PD I
Sbjct: 271 HMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQI 330

Query: 436 TVLAILSACNHAG---LVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKV 492
           T++ ILSAC   G   L K+ E        E+     +      VD+  K G +++A +V
Sbjct: 331 TLIGILSACASIGALDLGKQVEI----YASERGFQDDVYVGTALVDMYAKCGSLDNAFRV 386

Query: 493 VSTMPMKPSTRILSSLVSACRIHGRLEVA 521
              MP K      ++++SA   HG+ + A
Sbjct: 387 FYGMPNKNEVS-WNAMISALAFHGQAQEA 414


>gi|356533824|ref|XP_003535458.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 630

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 176/545 (32%), Positives = 299/545 (54%), Gaps = 14/545 (2%)

Query: 44  QHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINC 103
           Q    Q H   L +G   +  ++  L+S YA   +  ++  +F+ +  +    WNS+IN 
Sbjct: 44  QKLAQQSHAQILANGFAQNAFLATRLVSAYATCGELATSRFVFESVEAKSVYLWNSLING 103

Query: 104 FTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFEL 163
           + +N  + ++L +FREM   G +     LA +  +  ++ +L  G+ IH   I  G F  
Sbjct: 104 YVKNHDFRQALALFREMGRNGMLPDDYTLATVFKVFGELEDLVSGKLIHGKGIRIG-FVS 162

Query: 164 SVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQN-----YDTGIDL 218
            V V  +L+ +Y +C  +  A++VF++   RN  S+  +ISGC   +N     +D   + 
Sbjct: 163 DVVVGNSLMSMYCRCGEFGDAVKVFDETPHRNVGSFNVVISGCAALENCNFTSHDDLSNF 222

Query: 219 FRAMQREGVKPTRVTLTIVL-LACAELRDLRNGKAIHGYAYCCGFDF----DHHLSAALM 273
           F  MQ EG K    T+  +L + C +      G+ +H Y    G D     D HL ++L+
Sbjct: 223 FLRMQCEGFKADAFTVASLLPVCCGDTGKWDYGRELHCYVVKNGLDLKMDSDVHLGSSLI 282

Query: 274 HMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRL-ERIEPN 332
            MY    + +   R +F++ K ++V +W+++I GY Q+G   +A+ L   M++ + I PN
Sbjct: 283 DMYSRSKKVVL-GRRVFDQMKNRNVYVWTAMINGYVQNGAPDDALVLLRAMQMKDGIRPN 341

Query: 333 SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFN 392
            V+L++ L +C   + L  G  +H + +K  LN DVS+ NAL++MYSKCGS+  + + F 
Sbjct: 342 KVSLISALPACGLLAGLIGGKQIHGFSIKMELNDDVSLCNALIDMYSKCGSLDYARRAFE 401

Query: 393 EMAA-RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVK 451
             +  +D ++W+++IS YG HG GEEA+  + +M + G +PD ITV+ +LSAC+ +GLV 
Sbjct: 402 TSSYFKDAITWSSMISAYGLHGRGEEAIIAYYKMLQQGFKPDMITVVGVLSACSKSGLVD 461

Query: 452 EAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSA 511
           E  +++ ++M + +I   +E  AC VD+LG+SG+++ A + +  MP+ P   +  SL++A
Sbjct: 462 EGISIYKSLMTKYEIKPTVEICACVVDMLGRSGQLDQALEFIKEMPLDPGPSVWGSLLTA 521

Query: 512 CRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSY 571
             IHG     ++    L+E EPEN +NY  LS   +    W    EV  +M+ +GL K  
Sbjct: 522 SVIHGNSRTRDLAYRHLLELEPENPSNYISLSNTYASDRRWDVVTEVRTIMKERGLKKVP 581

Query: 572 GFSRI 576
           G S I
Sbjct: 582 GCSWI 586



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 122/433 (28%), Positives = 224/433 (51%), Gaps = 25/433 (5%)

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           ++ LC  +   +L +Q HA ++ +G F  + F++T L+  Y+ C     +  VFE +  +
Sbjct: 34  LLQLCIDLRSQKLAQQSHAQILANG-FAQNAFLATRLVSAYATCGELATSRFVFESVEAK 92

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
           +   W ++I+G + + ++   + LFR M R G+ P   TL  V     EL DL +GK IH
Sbjct: 93  SVYLWNSLINGYVKNHDFRQALALFREMGRNGMLPDDYTLATVFKVFGELEDLVSGKLIH 152

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG------- 307
           G     GF  D  +  +LM MYC C E    A  +F+ T  ++V  ++ +I G       
Sbjct: 153 GKGIRIGFVSDVVVGNSLMSMYCRCGE-FGDAVKVFDETPHRNVGSFNVVISGCAALENC 211

Query: 308 -YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF-LSHGLGVHCYIMKAGLN 365
            ++   DLS     F RM+ E  + ++ T+ ++L  C   +    +G  +HCY++K GL+
Sbjct: 212 NFTSHDDLSN---FFLRMQCEGFKADAFTVASLLPVCCGDTGKWDYGRELHCYVVKNGLD 268

Query: 366 F----DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
                DV +G++L++MYS+   +    ++F++M  R+   WT +I+GY  +G  ++AL L
Sbjct: 269 LKMDSDVHLGSSLIDMYSRSKKVVLGRRVFDQMKNRNVYVWTAMINGYVQNGAPDDALVL 328

Query: 422 FLEMQ-ESGVEPDAITVLAILSACN-HAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479
              MQ + G+ P+ +++++ L AC   AGL+   +    ++  E    +++ +    +D+
Sbjct: 329 LRAMQMKDGIRPNKVSLISALPACGLLAGLIGGKQIHGFSIKMELNDDVSLCN--ALIDM 386

Query: 480 LGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAA 537
             K G ++ A +   T          SS++SA  +HGR E A +  +++++   +P+   
Sbjct: 387 YSKCGSLDYARRAFETSSYFKDAITWSSMISAYGLHGRGEEAIIAYYKMLQQGFKPDMIT 446

Query: 538 NYTLLSMVCSESG 550
              +LS  CS+SG
Sbjct: 447 VVGVLS-ACSKSG 458



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 107/221 (48%), Gaps = 8/221 (3%)

Query: 230 TRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARII 289
           T  +L  +L  C +LR  +  +  H      GF  +  L+  L+  Y  C E L  +R +
Sbjct: 27  TPQSLLHLLQLCIDLRSQKLAQQSHAQILANGFAQNAFLATRLVSAYATCGE-LATSRFV 85

Query: 290 FERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFL 349
           FE  + K V +W+S+I GY ++ D  +A+ LF  M    + P+  TL  +         L
Sbjct: 86  FESVEAKSVYLWNSLINGYVKNHDFRQALALFREMGRNGMLPDDYTLATVFKVFGELEDL 145

Query: 350 SHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGY 409
             G  +H   ++ G   DV +GN+LM+MY +CG    + ++F+E   R+  S+  +ISG 
Sbjct: 146 VSGKLIHGKGIRIGFVSDVVVGNSLMSMYCRCGEFGDAVKVFDETPHRNVGSFNVVISGC 205

Query: 410 G------FHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
                  F  + ++    FL MQ  G + DA TV ++L  C
Sbjct: 206 AALENCNFTSH-DDLSNFFLRMQCEGFKADAFTVASLLPVC 245



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 119/241 (49%), Gaps = 11/241 (4%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSG----SDADPVISNSLISMYAKFS 77
           G  ++   + S++  C        +G +LHC  +K+G     D+D  + +SLI MY++  
Sbjct: 230 GFKADAFTVASLLPVCCGDTGKWDYGRELHCYVVKNGLDLKMDSDVHLGSSLIDMYSRSK 289

Query: 78  KPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAEL-LAGII 136
           K     ++FD+M  R+   W ++IN + QNG    +L + R M +   +   ++ L   +
Sbjct: 290 KVVLGRRVFDQMKNRNVYVWTAMINGYVQNGAPDDALVLLRAMQMKDGIRPNKVSLISAL 349

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVS--TALLDLYSKCHHWLIALRVFE-QMVI 193
             C  +  L  G+QIH   I     EL+  VS   AL+D+YSKC     A R FE     
Sbjct: 350 PACGLLAGLIGGKQIHGFSI---KMELNDDVSLCNALIDMYSKCGSLDYARRAFETSSYF 406

Query: 194 RNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAI 253
           ++ ++W++MIS        +  I  +  M ++G KP  +T+  VL AC++   +  G +I
Sbjct: 407 KDAITWSSMISAYGLHGRGEEAIIAYYKMLQQGFKPDMITVVGVLSACSKSGLVDEGISI 466

Query: 254 H 254
           +
Sbjct: 467 Y 467


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 156/445 (35%), Positives = 265/445 (59%), Gaps = 9/445 (2%)

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           II  CS +   E G +IH  V+  G ++  VF+S +L+ +Y KC  + ++ +VF++M  +
Sbjct: 16  IIKACSCLRHFEFGIRIHQDVVKFG-YQSQVFISNSLITMYGKCDKYELSRQVFDEMPDK 74

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
           N VSW+A+I  C+       G  LFR M  EG +P+R     +L A A +R       ++
Sbjct: 75  NAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSR---GAILNAMACVRSHEEADDVY 131

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
                 G DFD  + +A   M+  C   +  AR +F+    KD+V W++ I  Y ++   
Sbjct: 132 RVVVENGLDFDQSVQSAAAGMFARCGR-VEVARKLFDGIMSKDLVTWATTIEAYVKADMP 190

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD--VSIGN 372
            EA+ L  +M L+ I P+++TLL ++ +C+  +       VH  I+  G  ++  +++  
Sbjct: 191 LEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHG-IITTGFFYNQLLAVET 249

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
           AL+++Y KCGS+T + ++F+ M  R+ ++W+ +ISGYG HG+G EAL LF +M+ S V+P
Sbjct: 250 ALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGREALNLFDQMKAS-VKP 308

Query: 433 DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKV 492
           D IT ++ILSAC+H+GLV E    FN++ ++  +    EHYAC VD+LG++GK+++AC  
Sbjct: 309 DHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEHYACMVDILGRAGKLDEACDF 368

Query: 493 VSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNW 552
           +  MP++P+  +  +L+ ACRIH  +++AEM+A  L + +P NA  Y +L  + + +G  
Sbjct: 369 IERMPVRPNAAVWGALLGACRIHLNVDLAEMVARALFDLDPHNAGRYVILYNIYTLTGKR 428

Query: 553 LGAEEVWRVMRAKGLSKSYGFSRIE 577
             A+ +  +M+ +G+ K  G+S IE
Sbjct: 429 KEADSIRTLMKNRGVKKIAGYSVIE 453



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 176/333 (52%), Gaps = 10/333 (3%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G+  +    P +IKAC+  + H  FG+++H   +K G  +   ISNSLI+MY K  K E 
Sbjct: 5   GIQPDNFTFPFIIKACSCLR-HFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDKYEL 63

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           + Q+FDEMP ++ +SW++II    Q+        +FR+M   G          I++  + 
Sbjct: 64  SRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEG---SRPSRGAILNAMAC 120

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
           +   E    ++ +V+ +G  +    V +A   ++++C    +A ++F+ ++ ++ V+W  
Sbjct: 121 VRSHEEADDVYRVVVENG-LDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWAT 179

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
            I   + +      + L + M  +G+ P  +TL  V+ AC+ L   +    +HG     G
Sbjct: 180 TIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGI-ITTG 238

Query: 262 FDFDHHLS--AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
           F ++  L+   AL+ +Y +C  +L  AR +F+  + ++++ WS++I GY   G   EA+ 
Sbjct: 239 FFYNQLLAVETALIDLYVKCG-SLTYARKVFDGMQERNIITWSAMISGYGMHGWGREALN 297

Query: 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHG 352
           LF +M+   ++P+ +T ++ILS+C+    ++ G
Sbjct: 298 LFDQMKAS-VKPDHITFVSILSACSHSGLVAEG 329



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 157/332 (47%), Gaps = 11/332 (3%)

Query: 222 MQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTE 281
           M R G++P   T   ++ AC+ LR    G  IH      G+     +S +L+ MY +C +
Sbjct: 1   MLRLGIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKC-D 59

Query: 282 ALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILS 341
               +R +F+    K+ V WS+II    Q     E   LF +M  E   P+   +L  + 
Sbjct: 60  KYELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGAILNAM- 118

Query: 342 SCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS 401
           +C R         V+  +++ GL+FD S+ +A   M+++CG +  + ++F+ + ++D V+
Sbjct: 119 ACVRSH--EEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVT 176

Query: 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVM 461
           W T I  Y       EAL L  +M   G+ PDAIT+L ++ AC+     + A  +   + 
Sbjct: 177 WATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGIIT 236

Query: 462 KE--KKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLE 519
                   LA+E     +DL  K G +  A KV   M  + +    S+++S   +HG   
Sbjct: 237 TGFFYNQLLAVE--TALIDLYVKCGSLTYARKVFDGMQER-NIITWSAMISGYGMHGWGR 293

Query: 520 VAEMLAHQL-IEAEPENAANYTLLSMVCSESG 550
            A  L  Q+    +P++    ++LS  CS SG
Sbjct: 294 EALNLFDQMKASVKPDHITFVSILS-ACSHSG 324



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 97/395 (24%), Positives = 164/395 (41%), Gaps = 51/395 (12%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           ++   L++Q L      S  AIL     A A  ++H+     ++   +++G D D  + +
Sbjct: 93  KEGFSLFRQMLSEGSRPSRGAIL----NAMACVRSHEE-ADDVYRVVVENGLDFDQSVQS 147

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +   M+A+  + E A +LFD +  +D ++W + I  + +    + +L + ++M L G   
Sbjct: 148 AAAGMFARCGRVEVARKLFDGIMSKDLVTWATTIEAYVKADMPLEALGLLKQMMLQGIFP 207

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
            A  L G+I  CS +   +L   +H ++     +   + V TAL+DLY KC     A +V
Sbjct: 208 DAITLLGVIRACSTLASFQLAHIVHGIITTGFFYNQLLAVETALIDLYVKCGSLTYARKV 267

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F+ M  RN ++W+AMISG          ++LF  M +  VKP  +T   +L AC+     
Sbjct: 268 FDGMQERNIITWSAMISGYGMHGWGREALNLFDQM-KASVKPDHITFVSILSACSH---- 322

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
            +G    G+        D  ++    H  C                          ++  
Sbjct: 323 -SGLVAEGWECFNSMARDFGVTPRPEHYAC--------------------------MVDI 355

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
             ++G L EA     RM    + PN+    A+L +C         L V    M A   FD
Sbjct: 356 LGRAGKLDEACDFIERM---PVRPNAAVWGALLGACRIH------LNVDLAEMVARALFD 406

Query: 368 VSIGNA-----LMNMYSKCGSITSSHQIFNEMAAR 397
           +   NA     L N+Y+  G    +  I   M  R
Sbjct: 407 LDPHNAGRYVILYNIYTLTGKRKEADSIRTLMKNR 441


>gi|115476154|ref|NP_001061673.1| Os08g0375800 [Oryza sativa Japonica Group]
 gi|27260973|dbj|BAC45090.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|40253357|dbj|BAD05289.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113623642|dbj|BAF23587.1| Os08g0375800 [Oryza sativa Japonica Group]
 gi|215715200|dbj|BAG94951.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 696

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 188/567 (33%), Positives = 294/567 (51%), Gaps = 8/567 (1%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           + +H  GL SNT  L S +++ A A+     G QL   ALKSG   +   +++L+ +YAK
Sbjct: 82  RAMHAQGLASNTFALGSALRSAAVAR-RPAIGAQLQSLALKSGLANNVFAASALLDVYAK 140

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
             +   A Q+FD MP R+T+SWN++I  +T++G    +LE+F EM   G        A +
Sbjct: 141 CGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLAPDEATFASL 200

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM-VIR 194
           ++         L  Q+H  ++  GS  L + V  A +  YS+C     + R+F+ +  IR
Sbjct: 201 LTAVEGPSCF-LMHQLHGKIVKYGS-ALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDIR 258

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLF-RAMQREGVKPTRVTLTIVLLACAEL-RDLRNGKA 252
           + +SW AM+     +   D  +  F R MQ  GV P   + T ++ +C+E   D   G+ 
Sbjct: 259 DLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGRV 318

Query: 253 IHGYAYCCGFDFDHHLSAALMHMYCECTE--ALHPARIIFERTKVKDVVIWSSIIRGYSQ 310
           IHG       +    +  AL+ MY    E   +  A   F    +KD V W+S++ GYSQ
Sbjct: 319 IHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSWNSMLTGYSQ 378

Query: 311 SGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSI 370
            G  ++A+K F  M  E +  +     A L S +  + L  G  +H  ++ +G   +  +
Sbjct: 379 HGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQIHGLVIHSGFASNDFV 438

Query: 371 GNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV 430
            ++L+ MYSK G I  + + F E      V W  +I GY  HG  E    LF EM +   
Sbjct: 439 SSSLIFMYSKSGIIDDARKSFEEADKSSSVPWNAMIFGYAQHGQAENVDILFNEMLQRKA 498

Query: 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDAC 490
             D IT + ++++C+HAGLV E   + N +  +  + L +EHYAC VDL G++G+++ A 
Sbjct: 499 PLDHITFVGLITSCSHAGLVDEGSEILNTMETKYGVPLRMEHYACGVDLYGRAGQLDKAK 558

Query: 491 KVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESG 550
           K++ +MP +P   +  +L+ ACRIHG +E+A  +A  L  AEP   + Y LLS + S  G
Sbjct: 559 KLIDSMPFEPDAMVWMTLLGACRIHGNVELASDVASHLFVAEPRQHSTYVLLSSMYSGLG 618

Query: 551 NWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            W     V RVM+ +GLSK  G+S IE
Sbjct: 619 MWSDRATVQRVMKKRGLSKVPGWSWIE 645



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 148/543 (27%), Positives = 268/543 (49%), Gaps = 34/543 (6%)

Query: 43  HQHFGL---QLHCTALKSGSDADPVISNSLISMYAKFSKPE---SAYQLFDEMPYRDTIS 96
           H H  +   + H + LKSG  A P   N L++ Y++ S P+   +A ++FDE+P RD +S
Sbjct: 3   HHHLAVAAARSHASLLKSGVAA-PTPWNQLLTAYSR-SSPDGLAAARRVFDEVPRRDEVS 60

Query: 97  WNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVI 156
           WN+++     +G +  +  + R M+  G       L   +   +      +G Q+ +L +
Sbjct: 61  WNALLAAQAASGAHPEAWRLLRAMHAQGLASNTFALGSALRSAAVARRPAIGAQLQSLAL 120

Query: 157 VDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGI 216
             G    +VF ++ALLD+Y+KC     A +VF+ M  RN VSW A+I+G  +S +  + +
Sbjct: 121 KSG-LANNVFAASALLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASAL 179

Query: 217 DLFRAMQREGVKPTRVTLTIVLLA-----CAELRDLRNGKAIHGYAYCCGFDFDHHLSAA 271
           +LF  M+REG+ P   T   +L A     C  +  L +GK +  Y    G      L+AA
Sbjct: 180 ELFLEMEREGLAPDEATFASLLTAVEGPSCFLMHQL-HGKIVK-YGSALGLTV---LNAA 234

Query: 272 LMHMYCECTEALHPARIIFERT-KVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER-I 329
           +   Y +C  +L  +R IF+    ++D++ W++++  Y+ +G   EAMK F RM  E  +
Sbjct: 235 IT-AYSQCG-SLKDSRRIFDGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGV 292

Query: 330 EPNSVTLLAILSSCTRQSFLSH-GLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS---IT 385
            P+  +  +I+SSC+      H G  +H  ++K+ L     + NAL+ MY++      + 
Sbjct: 293 HPDMYSFTSIISSCSEHGHDDHQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMME 352

Query: 386 SSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
            +++ FN +  +D VSW ++++GY  HG   +AL+ F  M    V  D     A L + +
Sbjct: 353 DAYKCFNSLVLKDTVSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSS 412

Query: 446 HAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDACKVVSTMPMKPSTR 503
              +++  + +   V+       A   +  +  + +  KSG I+DA K       K S+ 
Sbjct: 413 ELAVLQLGKQIHGLVIHS---GFASNDFVSSSLIFMYSKSGIIDDARKSFEEAD-KSSSV 468

Query: 504 ILSSLVSACRIHGRLEVAEMLAHQLIEAE-PENAANYTLLSMVCSESGNWLGAEEVWRVM 562
             ++++     HG+ E  ++L +++++ + P +   +  L   CS +G      E+   M
Sbjct: 469 PWNAMIFGYAQHGQAENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSEILNTM 528

Query: 563 RAK 565
             K
Sbjct: 529 ETK 531



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 161/352 (45%), Gaps = 33/352 (9%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           ++ +  + + +  SG++ +     S+I +C+      H G  +H   +KS  +    + N
Sbjct: 277 DEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGRVIHGLVIKSALEGVTPVCN 336

Query: 68  SLISMYAKFSKP---ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG 124
           +LI+MY ++++    E AY+ F+ +  +DT+SWNS++  ++Q+G    +L+ FR M  C 
Sbjct: 337 ALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSWNSMLTGYSQHGLSADALKFFRCM--CS 394

Query: 125 FVLKAELLAGIISL--CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL 182
             ++ +  A   +L   S++  L+LG+QIH LVI  G F  + FVS++L+ +YSK     
Sbjct: 395 ENVRTDEYAFSAALRSSSELAVLQLGKQIHGLVIHSG-FASNDFVSSSLIFMYSKSGIID 453

Query: 183 IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
            A + FE+    + V W AMI G       +    LF  M +       +T   ++ +C+
Sbjct: 454 DARKSFEEADKSSSVPWNAMIFGYAQHGQAENVDILFNEMLQRKAPLDHITFVGLITSCS 513

Query: 243 ELRDLRNGKAI-------HGYA-----YCCGFDFDHHLSAALMHMYCECTEALHPARIIF 290
               +  G  I       +G       Y CG D           +Y    +     ++I 
Sbjct: 514 HAGLVDEGSEILNTMETKYGVPLRMEHYACGVD-----------LYGRAGQLDKAKKLID 562

Query: 291 ERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSS 342
                 D ++W +++      G++  A  + S + +   EP   +   +LSS
Sbjct: 563 SMPFEPDAMVWMTLLGACRIHGNVELASDVASHLFVA--EPRQHSTYVLLSS 612


>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
 gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
          Length = 583

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 178/551 (32%), Positives = 296/551 (53%), Gaps = 12/551 (2%)

Query: 29  ILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSK-PESAYQLFD 87
           +L   IK C   +  +    Q+H   + SG   D  +++ ++  +A F +  + A    +
Sbjct: 7   VLLDSIKDCKNLRIFR----QIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDYLE 62

Query: 88  EMPYR-DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELE 146
           +   R  +  +NS+IN +    F   ++ ++R M   GFV        ++  CS      
Sbjct: 63  QGNTRLGSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSR 122

Query: 147 LGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGC 206
            GRQ+H +V+  G      +V  +L+  Y  C  +  A +VF++M++R+ VSW ++ISG 
Sbjct: 123 EGRQVHGVVVKLGLLA-DHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGF 181

Query: 207 IDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDH 266
           + + ++D  I +F  M    V+P+  TL  VL ACA   DL  GK IHG      F  + 
Sbjct: 182 MKAGHFDEAISVFFRMD---VEPSMTTLVSVLAACARNGDLCTGKGIHGVIER-RFKVNL 237

Query: 267 HLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRL 326
            L  A++ MY +     + A+ IF+    +D+V W+ +I G  QS    ++++LFS MR 
Sbjct: 238 VLGNAMLDMYVK-NGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMRT 296

Query: 327 ERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITS 386
             I P+++ L ++LS+C     L  G  VH YI + G+ +D+ IG A+++MY+KCG I  
Sbjct: 297 LGISPDAIILTSVLSACASLGTLDFGTWVHEYINQRGIKWDIHIGTAIVDMYAKCGCIEM 356

Query: 387 SHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH 446
           + +IF  M+ R+  +W  L+ G   HG   EAL LF  M  SGV+P+ IT LAIL+AC H
Sbjct: 357 ALKIFYSMSQRNTFTWNALLCGLAMHGLVHEALNLFEVMIISGVKPNEITFLAILTACCH 416

Query: 447 AGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILS 506
            GLV E    F+N+ K   +   +EHY C +DL  ++G +E+A ++  TMPMKP   I  
Sbjct: 417 CGLVDEGRKYFDNMSKLYNLLPKLEHYGCMIDLFCRAGLLEEAVELARTMPMKPDVLIWG 476

Query: 507 SLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566
            L++AC   G +E++  +   ++E + +++  + LLS + + +  W     + R+M+ +G
Sbjct: 477 LLLNACTTVGNIELSHRIQDYILELDHDDSGVFVLLSNISAINQRWSNVTRLRRLMKDRG 536

Query: 567 LSKSYGFSRIE 577
           + K+ G S IE
Sbjct: 537 VRKAPGSSVIE 547



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 104/351 (29%), Positives = 182/351 (51%), Gaps = 8/351 (2%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V   F +  + +Y++ +   G   +    P ++KAC+     +  G Q+H   +K G  A
Sbjct: 81  VGGEFPQMAVSVYRRMVR-DGFVPDMFTFPVLLKACSNFSGSRE-GRQVHGVVVKLGLLA 138

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D  + NSLI  Y        A ++FDEM  RD +SWNS+I+ F + G +  ++ +F  M 
Sbjct: 139 DHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGHFDEAISVFFRM- 197

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
                     L  +++ C++ G+L  G+ IH   +++  F++++ +  A+LD+Y K   +
Sbjct: 198 --DVEPSMTTLVSVLAACARNGDLCTGKGIHG--VIERRFKVNLVLGNAMLDMYVKNGCF 253

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             A  +F+++  R+ VSWT MI+G + S +    ++LF  M+  G+ P  + LT VL AC
Sbjct: 254 YEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMRTLGISPDAIILTSVLSAC 313

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A L  L  G  +H Y    G  +D H+  A++ MY +C   +  A  IF     ++   W
Sbjct: 314 ASLGTLDFGTWVHEYINQRGIKWDIHIGTAIVDMYAKCG-CIEMALKIFYSMSQRNTFTW 372

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHG 352
           ++++ G +  G + EA+ LF  M +  ++PN +T LAIL++C     +  G
Sbjct: 373 NALLCGLAMHGLVHEALNLFEVMIISGVKPNEITFLAILTACCHCGLVDEG 423



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 2/150 (1%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           +V     +Q+L L+   +   G+  +  IL SV+ ACA   T   FG  +H    + G  
Sbjct: 278 LVQSDHPKQSLELFSM-MRTLGISPDAIILTSVLSACASLGTLD-FGTWVHEYINQRGIK 335

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
            D  I  +++ MYAK    E A ++F  M  R+T +WN+++     +G    +L +F  M
Sbjct: 336 WDIHIGTAIVDMYAKCGCIEMALKIFYSMSQRNTFTWNALLCGLAMHGLVHEALNLFEVM 395

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQ 150
            + G          I++ C   G ++ GR+
Sbjct: 396 IISGVKPNEITFLAILTACCHCGLVDEGRK 425


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 169/502 (33%), Positives = 278/502 (55%), Gaps = 24/502 (4%)

Query: 96  SWNSIINCFTQNGFYVRSLEMFREMYL------CGFVLKAELLAGIISLCSQIGELELGR 149
           SW   I      G +  ++ +F  M        C  VL +  L G +  C+ +G   LG 
Sbjct: 21  SWAHQIRVAASQGDFHHAIALFLRMRASDPAAACSSVLTS--LPGALKSCAALGLRALGA 78

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHW-------------LIALR-VFEQMVIRN 195
            +HAL +  G+F    F + ALL+LY K                 L ++R VF++M  ++
Sbjct: 79  SLHALALRSGAFA-DRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKD 137

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
            VSW  ++ GC +S  +   + L R M R+G KP   TL+ VL   AE  D+R G  +HG
Sbjct: 138 VVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHG 197

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
           +A   GF  D  + ++L+ MY  CT   +  ++ F+   V+D ++W+S++ G +Q+G + 
Sbjct: 198 FATRNGFHDDVFVGSSLIDMYANCTRTDYSVKV-FDNLPVRDAILWNSMLAGCAQNGSVD 256

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           EA+ LF RM    I+P  VT  +++ +C   + L  G  +H Y+++ G + +V I ++L+
Sbjct: 257 EALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFISSSLI 316

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           +MY KCG+++ + +IF+ + + D VSWT +I G+  HG   EAL LF  M+   ++P+ I
Sbjct: 317 DMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPNHI 376

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           T LA+L+AC+HAGLV +    FN++     I  ++EH+A   D LG+ GK+E+A   +S 
Sbjct: 377 TFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGKLEEAYNFISG 436

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGA 555
           M +KP+  + S+L+ AC++H    +AE +A ++ + EP +  ++ +LS   S SG W  A
Sbjct: 437 MKIKPTASVWSTLLRACKVHKNTVLAEEVAKKIFDLEPRSMGSHIILSNTYSSSGRWNEA 496

Query: 556 EEVWRVMRAKGLSKSYGFSRIE 577
             + + MR KG+ K    S IE
Sbjct: 497 AHLRKSMRKKGMQKEPACSWIE 518



 Score =  214 bits (546), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 119/399 (29%), Positives = 214/399 (53%), Gaps = 19/399 (4%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKP---------- 79
           LP  +K+CA A   +  G  LH  AL+SG+ AD   +N+L+++Y K   P          
Sbjct: 61  LPGALKSCA-ALGLRALGASLHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGS 119

Query: 80  ----ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
               ES  ++FDEMP +D +SWN+++    ++G +  +L + REM+  G    +  L+ +
Sbjct: 120 AVVLESVRKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSV 179

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           + + ++  ++  G ++H     +G F   VFV ++L+D+Y+ C     +++VF+ + +R+
Sbjct: 180 LPIFAEGADVRRGMELHGFATRNG-FHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRD 238

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
            + W +M++GC  + + D  + LFR M   G+KP  VT + ++ AC  L  L  GK +H 
Sbjct: 239 AILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHA 298

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
           Y    GFD +  +S++L+ MYC+C   +  AR IF+R +  D+V W+++I G++  G   
Sbjct: 299 YVIRGGFDGNVFISSSLIDMYCKCGN-VSIARRIFDRIQSPDIVSWTAMIMGHALHGPAR 357

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA-GLNFDVSIGNAL 374
           EA+ LF RM L  ++PN +T LA+L++C+    +  G      +    G+   +    AL
Sbjct: 358 EALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAAL 417

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVS-WTTLISGYGFH 412
            +   + G +  ++   + M  +   S W+TL+     H
Sbjct: 418 ADTLGRPGKLEEAYNFISGMKIKPTASVWSTLLRACKVH 456



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 163/337 (48%), Gaps = 23/337 (6%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           +E+   G   ++  L SV+   A     +  G++LH  A ++G   D  + +SLI MYA 
Sbjct: 162 REMWRDGCKPDSFTLSSVLPIFAEGADVRR-GMELHGFATRNGFHDDVFVGSSLIDMYAN 220

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
            ++ + + ++FD +P RD I WNS++    QNG    +L +FR M   G        + +
Sbjct: 221 CTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSL 280

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           I  C  +  L LG+Q+HA VI  G F+ +VF+S++L+D+Y KC +  IA R+F+++   +
Sbjct: 281 IPACGNLASLLLGKQLHAYVI-RGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPD 339

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
            VSWTAMI G          + LF  M+   +KP  +T   VL AC+       G    G
Sbjct: 340 IVSWTAMIMGHALHGPAREALVLFDRMELGNLKPNHITFLAVLTACSHA-----GLVDKG 394

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARI-----IFERTKVKDVV-IWSSIIRG-- 307
           + Y       + +  +L H          P ++          K+K    +WS+++R   
Sbjct: 395 WKYFNSMSDHYGIVPSLEHHAALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLLRACK 454

Query: 308 YSQSGDLSE--AMKLFSRMRLERIEPNSVTLLAILSS 342
             ++  L+E  A K+F       +EP S+    ILS+
Sbjct: 455 VHKNTVLAEEVAKKIFD------LEPRSMGSHIILSN 485


>gi|125603224|gb|EAZ42549.1| hypothetical protein OsJ_27115 [Oryza sativa Japonica Group]
          Length = 696

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 188/567 (33%), Positives = 294/567 (51%), Gaps = 8/567 (1%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           + +H  GL SNT  L S +++ A A+     G QL   ALKSG   +   +++L+ +YAK
Sbjct: 82  RAMHAQGLASNTFALGSALRSAAVAR-RPAIGAQLQSLALKSGLANNVFAASALLDVYAK 140

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
             +   A Q+FD MP R+T+SWN++I  +T++G    +LE+F EM   G        A +
Sbjct: 141 CGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLAPDEATFASL 200

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM-VIR 194
           ++         L  Q+H  ++  GS  L + V  A +  YS+C     + R+F+ +  IR
Sbjct: 201 LTAVEGPSCF-LMHQLHGKIVKYGS-ALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDIR 258

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLF-RAMQREGVKPTRVTLTIVLLACAEL-RDLRNGKA 252
           + +SW AM+     +   D  +  F R MQ  GV P   + T ++ +C+E   D   G+ 
Sbjct: 259 DLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGRV 318

Query: 253 IHGYAYCCGFDFDHHLSAALMHMYCECTE--ALHPARIIFERTKVKDVVIWSSIIRGYSQ 310
           IHG       +    +  AL+ MY    E   +  A   F    +KD V W+S++ GYSQ
Sbjct: 319 IHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSWNSMLTGYSQ 378

Query: 311 SGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSI 370
            G  ++A+K F  M  E +  +     A L S +  + L  G  +H  ++ +G   +  +
Sbjct: 379 HGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQIHGLVIHSGFASNDFV 438

Query: 371 GNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV 430
            ++L+ MYSK G I  + + F E      V W  +I GY  HG  E    LF EM +   
Sbjct: 439 SSSLIFMYSKSGIIDDARKSFEEADKSSSVPWNAMIFGYAQHGQAENVDILFNEMLQRKA 498

Query: 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDAC 490
             D IT + ++++C+HAGLV E   + N +  +  + L +EHYAC VDL G++G+++ A 
Sbjct: 499 PLDHITFVGLITSCSHAGLVDEGSEILNTMETKYGVPLRMEHYACGVDLYGRAGQLDKAK 558

Query: 491 KVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESG 550
           K++ +MP +P   +  +L+ ACRIHG +E+A  +A  L  AEP   + Y LLS + S  G
Sbjct: 559 KLIDSMPFEPDAMVWMTLLGACRIHGNVELASDVASHLFVAEPRQHSTYVLLSSMYSGLG 618

Query: 551 NWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            W     V RVM+ +GLSK  G+S IE
Sbjct: 619 MWSDRATVQRVMKKRGLSKVPGWSWIE 645



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 139/516 (26%), Positives = 256/516 (49%), Gaps = 30/516 (5%)

Query: 67  NSLISMYAKFSKPE---SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC 123
           N L++ Y++ S P+   +A ++FDE+P RD +SWN+++     +G +  +  + R M+  
Sbjct: 29  NQLLTAYSR-SSPDGLAAARRVFDEVPRRDEVSWNALLAAQAASGAHPEAWRLLRAMHAQ 87

Query: 124 GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
           G       L   +   +      +G Q+ +L +  G    +VF ++ALLD+Y+KC     
Sbjct: 88  GLASNTFALGSALRSAAVARRPAIGAQLQSLALKSG-LANNVFAASALLDVYAKCGRVRD 146

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA--- 240
           A +VF+ M  RN VSW A+I+G  +S +  + ++LF  M+REG+ P   T   +L A   
Sbjct: 147 ARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLAPDEATFASLLTAVEG 206

Query: 241 --CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERT-KVKD 297
             C  +  L +GK +  Y    G      L+AA+   Y +C  +L  +R IF+    ++D
Sbjct: 207 PSCFLMHQL-HGKIVK-YGSALGLTV---LNAAIT-AYSQCG-SLKDSRRIFDGIGDIRD 259

Query: 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRLER-IEPNSVTLLAILSSCTRQSFLSH-GLGV 355
           ++ W++++  Y+ +G   EAMK F RM  E  + P+  +  +I+SSC+      H G  +
Sbjct: 260 LISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGRVI 319

Query: 356 HCYIMKAGLNFDVSIGNALMNMYSKCGS---ITSSHQIFNEMAARDFVSWTTLISGYGFH 412
           H  ++K+ L     + NAL+ MY++      +  +++ FN +  +D VSW ++++GY  H
Sbjct: 320 HGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSWNSMLTGYSQH 379

Query: 413 GYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEH 472
           G   +AL+ F  M    V  D     A L + +   +++  + +   V+       A   
Sbjct: 380 GLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQIHGLVIHS---GFASND 436

Query: 473 Y--ACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE 530
           +  +  + +  KSG I+DA K       K S+   ++++     HG+ E  ++L +++++
Sbjct: 437 FVSSSLIFMYSKSGIIDDARKSFEEAD-KSSSVPWNAMIFGYAQHGQAENVDILFNEMLQ 495

Query: 531 AE-PENAANYTLLSMVCSESGNWLGAEEVWRVMRAK 565
            + P +   +  L   CS +G      E+   M  K
Sbjct: 496 RKAPLDHITFVGLITSCSHAGLVDEGSEILNTMETK 531



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 161/352 (45%), Gaps = 33/352 (9%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           ++ +  + + +  SG++ +     S+I +C+      H G  +H   +KS  +    + N
Sbjct: 277 DEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGRVIHGLVIKSALEGVTPVCN 336

Query: 68  SLISMYAKFSKP---ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG 124
           +LI+MY ++++    E AY+ F+ +  +DT+SWNS++  ++Q+G    +L+ FR M  C 
Sbjct: 337 ALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSWNSMLTGYSQHGLSADALKFFRCM--CS 394

Query: 125 FVLKAELLAGIISL--CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL 182
             ++ +  A   +L   S++  L+LG+QIH LVI  G F  + FVS++L+ +YSK     
Sbjct: 395 ENVRTDEYAFSAALRSSSELAVLQLGKQIHGLVIHSG-FASNDFVSSSLIFMYSKSGIID 453

Query: 183 IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
            A + FE+    + V W AMI G       +    LF  M +       +T   ++ +C+
Sbjct: 454 DARKSFEEADKSSSVPWNAMIFGYAQHGQAENVDILFNEMLQRKAPLDHITFVGLITSCS 513

Query: 243 ELRDLRNGKAI-------HGYA-----YCCGFDFDHHLSAALMHMYCECTEALHPARIIF 290
               +  G  I       +G       Y CG D           +Y    +     ++I 
Sbjct: 514 HAGLVDEGSEILNTMETKYGVPLRMEHYACGVD-----------LYGRAGQLDKAKKLID 562

Query: 291 ERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSS 342
                 D ++W +++      G++  A  + S + +   EP   +   +LSS
Sbjct: 563 SMPFEPDAMVWMTLLGACRIHGNVELASDVASHLFV--AEPRQHSTYVLLSS 612


>gi|115468242|ref|NP_001057720.1| Os06g0506100 [Oryza sativa Japonica Group]
 gi|52075894|dbj|BAD45840.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113595760|dbj|BAF19634.1| Os06g0506100 [Oryza sativa Japonica Group]
          Length = 766

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 176/559 (31%), Positives = 291/559 (52%), Gaps = 5/559 (0%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           SG  ++   L S ++AC         G Q+H  ALKS   +D ++ N+L++MY+K    +
Sbjct: 146 SGTAADQFALGSAVRACT-ELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVD 204

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAG-IISLC 139
             + LF+ +  +D ISW SII  F Q GF + +L++FREM + G     E   G     C
Sbjct: 205 DGFMLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRAC 264

Query: 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSW 199
             +G  E G QIH L I     +  ++V  +L D+Y++C +   A   F ++   + VSW
Sbjct: 265 GAVGSWEYGEQIHGLSI-KYRLDRDLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSW 323

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
            ++++           + LF  M+  G++P  +T+  +L AC     L +G+ IH Y   
Sbjct: 324 NSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVK 383

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
            G D D  +  +L+ MY  C++ L  A  +F   K +DVV W+SI+   +Q     E +K
Sbjct: 384 LGLDGDVSVCNSLLSMYARCSD-LSSAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLK 442

Query: 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           LFS +       + ++L  +LS+     +      VH Y  KAGL  D  + N L++ Y+
Sbjct: 443 LFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYA 502

Query: 380 KCGSITSSHQIFNEMAA-RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
           KCGS+  + ++F  M   RD  SW++LI GY   GY +EA  LF  M+  G+ P+ +T +
Sbjct: 503 KCGSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEAFDLFSRMRSLGIRPNHVTFI 562

Query: 439 AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPM 498
            +L+AC+  G V E    ++ +  E  I    EH +C VDLL ++GK+ +A   +  MP 
Sbjct: 563 GVLTACSRVGFVNEGCYYYSIMEPEYGIVPTREHCSCIVDLLARAGKLTEAANFIDQMPF 622

Query: 499 KPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEV 558
           +P   +  +L++A ++H  +E+ +  A  ++  +P ++A Y LL  + + SGNW     +
Sbjct: 623 EPDIIMWKTLLAASKMHNDMEMGKRAAEGILNIDPSHSAAYVLLCNIYAASGNWNEFARL 682

Query: 559 WRVMRAKGLSKSYGFSRIE 577
            + MR  G+ KS G S ++
Sbjct: 683 KKAMRTSGVKKSPGKSWVK 701



 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 140/457 (30%), Positives = 237/457 (51%), Gaps = 18/457 (3%)

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
            + V+ N LI+MY + + P+SA Q+FDEMP R+ +SW S+I    QNG    +L +F  M
Sbjct: 84  GNTVLGNHLITMYGRCAAPDSARQVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSM 143

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVD--GSFELSVFVSTALLDLYSKC 178
              G       L   +  C+++G++  GRQ+HA  +    GS    + V  AL+ +YSK 
Sbjct: 144 LRSGTAADQFALGSAVRACTELGDVGTGRQVHAHALKSERGS---DLIVQNALVTMYSKN 200

Query: 179 HHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK-PTRVTLTIV 237
                   +FE++  ++ +SW ++I+G          + +FR M  EG   P        
Sbjct: 201 GLVDDGFMLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSA 260

Query: 238 LLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKD 297
             AC  +     G+ IHG +     D D ++  +L  MY  C   L  AR+ F R +  D
Sbjct: 261 FRACGAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARCKN-LDSARVAFYRIEAPD 319

Query: 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHC 357
           +V W+SI+  YS  G LSEA+ LFS MR   + P+ +T+  +L +C  +  L HG  +H 
Sbjct: 320 LVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHS 379

Query: 358 YIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEE 417
           Y++K GL+ DVS+ N+L++MY++C  ++S+  +F+E+  +D V+W ++++    H + EE
Sbjct: 380 YLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSILTACAQHNHPEE 439

Query: 418 ALQLFLEMQESGVEPDAITVLAILSACNHAG---LVKE--AETLFNNVMKEKKIALAIEH 472
            L+LF  + +S    D I++  +LSA    G   +VK+  A      ++ ++ ++  +  
Sbjct: 440 VLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKAGLVDDRMLSNTL-- 497

Query: 473 YACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLV 509
               +D   K G ++DA ++   M         SSL+
Sbjct: 498 ----IDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLI 530


>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
          Length = 1321

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 164/532 (30%), Positives = 292/532 (54%), Gaps = 1/532 (0%)

Query: 46  FGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT 105
            G + HC  +K G  +D  +  SLI MYAK  + +SA +++D+M   D  + N +I+ + 
Sbjct: 131 LGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSLDAATCNCLISAYA 190

Query: 106 QNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSV 165
           +NGF+V++ ++F ++   G        + ++++C  I  ++ G+Q+HA V V   +    
Sbjct: 191 RNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHV-VKMQYLSET 249

Query: 166 FVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
            V  ALL LYSKC     A  VFE +  RN +SWTA I+G     ++   +  F  M+  
Sbjct: 250 AVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRES 309

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
           G++P   T +IVL +C  ++D  +G+  H      G      +  A++ MY    E    
Sbjct: 310 GIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEA 369

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
            +   +  +    V W+++I GY  +  + +AM+ F RM  E +  N  T   I  +C+ 
Sbjct: 370 EKQFKQMGRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSS 429

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
              L+  + +H  ++K+ +  ++ + ++L+  Y++CGS+ ++ Q+F +++  D VSW ++
Sbjct: 430 FPSLATTVQIHSRLIKSNVESNLHVASSLIEAYTQCGSLENAVQVFTQISDADVVSWNSI 489

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           I  Y  +G   +A+ L  +M E G +P + T L +LSAC+H+GLV+E +  F +++++  
Sbjct: 490 IKAYSQNGDPWKAIFLLRKMIEEGNKPTSXTFLTVLSACSHSGLVQEGQEFFKSMVQDYS 549

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
           I     H +C VD+LG++G++E+A   +  + MKP+  I   L++ACR +  L++AE +A
Sbjct: 550 IQPEETHCSCMVDILGRAGQLENALDFIKKLTMKPTASIWRPLLAACRYNSNLQMAEYVA 609

Query: 526 HQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            ++++ EP +A  Y  LS + +E G W  AE   R+M  K +SK  G S IE
Sbjct: 610 EKILDLEPNDATVYVTLSNMYAEVGRWADAENQRRLMEQKEISKEPGCSWIE 661



 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 166/509 (32%), Positives = 275/509 (54%), Gaps = 33/509 (6%)

Query: 69   LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
            L+S Y +  +  +A +LFD++P  +   W  +     + GFY  +L  F EM   G    
Sbjct: 844  LMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPN 903

Query: 129  AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
              +L  I+  C  + +   G  +H  VI+  SFE   ++ +AL+ +YSKC H   A RVF
Sbjct: 904  QFVLPSILKACGHLSDRRTGENMHT-VILKNSFESDAYIISALIYMYSKCGHVEKACRVF 962

Query: 189  EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
            + +V ++ V   AM+SG          +BL + MQ+ GVKP  V+   ++   +++ D  
Sbjct: 963  DWIVDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVGD-- 1020

Query: 249  NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
              K++    +                            R++       DVV W+S+I G+
Sbjct: 1021 --KSMVSEVF----------------------------RLMTANGVEPDVVSWTSVISGF 1050

Query: 309  SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
             Q+    E    F  M  +   P+SVT+ ++L +CT  + L HG  +H Y M  G+  DV
Sbjct: 1051 VQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDV 1110

Query: 369  SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
             + +AL++MY+KCG I+ +  +F  M  R+ V+W +LI GY  HGY  EA++LF +M+ES
Sbjct: 1111 YVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEES 1170

Query: 429  GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIED 488
              + D +T  A+L+AC+HAG+V+  E+LF  + ++ +I   +EHYAC VDLLG++GK+ +
Sbjct: 1171 DTKLDHLTFTAVLNACSHAGMVELGESLFXKMQEKYRIEPRLEHYACMVDLLGRAGKLSE 1230

Query: 489  ACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSE 548
            A  ++  MP++P   +  +L+ ACR HG +E+AE+ A  L E EPE+  +  LLS + ++
Sbjct: 1231 AYDLIKAMPVEPDKFVWGALLGACRNHGNIELAEVAAEHLFELEPESPGSSLLLSNLYAD 1290

Query: 549  SGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +G W  A ++ ++M+ +   K  G S IE
Sbjct: 1291 AGRWGNAAKMKKMMKQRKFGKFPGCSWIE 1319



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 120/451 (26%), Positives = 217/451 (48%), Gaps = 68/451 (15%)

Query: 4    KHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADP 63
            + FYE+ L  +  E+   GL  N  +LPS++KAC +  + +  G  +H   LK+  ++D 
Sbjct: 882  RGFYEEALSAF-SEMQKEGLRPNQFVLPSILKACGHL-SDRRTGENMHTVILKNSFESDA 939

Query: 64   VISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC 123
             I ++LI MY+K    E A ++FD +  +D +  N++++ + Q+GF   +L++ ++M   
Sbjct: 940  YIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQQA 999

Query: 124  GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
            G          +I+  SQ+G+  +  ++  L+  +G                        
Sbjct: 1000 GVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTANG------------------------ 1035

Query: 184  ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
                    V  + VSWT++ISG + + +   G D F+ M  +G  P+ VT++ +L AC  
Sbjct: 1036 --------VEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTN 1087

Query: 244  LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
            + +LR+GK IHGYA   G + D ++ +AL+ MY +C   +  A+I+F     ++ V W+S
Sbjct: 1088 VANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCG-YISEAKILFYMMPERNTVTWNS 1146

Query: 304  IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
            +I GY+  G  +EA++LF++M     + + +T  A+L++C+                 AG
Sbjct: 1147 LIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSH----------------AG 1190

Query: 364  LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
            +   V +G +L         +   ++I   +       +  ++   G  G   EA  L  
Sbjct: 1191 M---VELGESLFX------KMQEKYRIEPRLE-----HYACMVDLLGRAGKLSEAYDLIK 1236

Query: 424  EMQESGVEPDAITVLAILSACNHAGLVKEAE 454
             M    VEPD     A+L AC + G ++ AE
Sbjct: 1237 AMP---VEPDKFVWGALLGACRNHGNIELAE 1264



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 119/458 (25%), Positives = 220/458 (48%), Gaps = 10/458 (2%)

Query: 108 GFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFV 167
           GF+ R+ E     +  GF  +  + + + S C + G +ELGR+ H  V+  G      FV
Sbjct: 94  GFFTRN-ETPHVEFGGGFPHRQYVFSAL-SFCGREGCVELGRRWHCFVVKIG-LGSDEFV 150

Query: 168 STALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV 227
            T+L+D+Y+KC     A+RV+++M   +  +   +IS    +  +     +F  +   G 
Sbjct: 151 CTSLIDMYAKCGEVDSAVRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGT 210

Query: 228 KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPAR 287
           +P   T + +L  C  +  ++ GK +H +     +  +  +  AL+ +Y +C   +  A 
Sbjct: 211 RPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCG-MMEEAE 269

Query: 288 IIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQS 347
           I+FE  + ++++ W++ I G+ Q GD  +A+K FS MR   IEPN  T   +L+SC    
Sbjct: 270 IVFESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVK 329

Query: 348 FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA-ARDFVSWTTLI 406
               G   H  ++K G+   V +G A+++MYS  G +  + + F +M  A   VSW  LI
Sbjct: 330 DFIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALI 389

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
           +GY  +   E+A++ F  M +  V  +  T   I  AC+    +     + + ++K   +
Sbjct: 390 AGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSSFPSLATTVQIHSRLIK-SNV 448

Query: 467 ALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAH 526
              +   +  ++   + G +E+A +V + +         +S++ A   +G    A  L  
Sbjct: 449 ESNLHVASSLIEAYTQCGSLENAVQVFTQIS-DADVVSWNSIIKAYSQNGDPWKAIFLLR 507

Query: 527 QLIEA--EPENAANYTLLSMVCSESGNWLGAEEVWRVM 562
           ++IE   +P +    T+LS  CS SG     +E ++ M
Sbjct: 508 KMIEEGNKPTSXTFLTVLS-ACSHSGLVQEGQEFFKSM 544



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 110/449 (24%), Positives = 206/449 (45%), Gaps = 50/449 (11%)

Query: 125  FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
            F   ++  A  I + ++   L  GR +HA +++ G   L+ F +  L+  Y++C     A
Sbjct: 799  FQSSSDTYAKAIDMYARDRALYRGRALHAHLVIIGLARLTYFAAK-LMSFYTECGQLSNA 857

Query: 185  LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
             ++F+++   N   W  +   C     Y+  +  F  MQ+EG++P +  L  +L AC  L
Sbjct: 858  RKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHL 917

Query: 245  RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
             D R G+ +H       F+ D ++ +AL++MY +C       R +F+    KD+V+ +++
Sbjct: 918  SDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACR-VFDWIVDKDLVVMNAM 976

Query: 305  IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
            + GY+Q G + EA+ L  +M+   ++PN V+                             
Sbjct: 977  VSGYAQHGFVHEALBLVQKMQQAGVKPNVVSW---------------------------- 1008

Query: 365  NFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR----DFVSWTTLISGYGFHGYGEEALQ 420
                   N L+  +S+ G  +   ++F  M A     D VSWT++ISG+  + +  E   
Sbjct: 1009 -------NTLIAGFSQVGDKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFD 1061

Query: 421  LFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVM---KEKKIALAIEHYACYV 477
             F EM + G  P ++T+ ++L AC +   ++  + +    M    EK + +     +  V
Sbjct: 1062 AFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVR----SALV 1117

Query: 478  DLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPE-NA 536
            D+  K G I +A  +   MP + +T   +SL+     HG    A  L +Q+ E++ + + 
Sbjct: 1118 DMYAKCGYISEAKILFYMMPER-NTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDH 1176

Query: 537  ANYTLLSMVCSESGNWLGAEEVWRVMRAK 565
              +T +   CS +G     E ++  M+ K
Sbjct: 1177 LTFTAVLNACSHAGMVELGESLFXKMQEK 1205



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 111/217 (51%), Gaps = 14/217 (6%)

Query: 283 LHPARIIFERTKVKDVVIWSSIIRGYSQ--SGDLSEAMK---LFSRMRLERIE-----PN 332
           L+ A I+FE+T  +   I  SI   +    + D  E +K    F+R     +E     P+
Sbjct: 56  LNNACILFEKTPKR---IGVSITESHRSGCTDDPEEGVKEAGFFTRNETPHVEFGGGFPH 112

Query: 333 SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFN 392
              + + LS C R+  +  G   HC+++K GL  D  +  +L++MY+KCG + S+ ++++
Sbjct: 113 RQYVFSALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYD 172

Query: 393 EMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKE 452
           +M + D  +   LIS Y  +G+  +A Q+F+++   G  P+  T   +L+ C     ++E
Sbjct: 173 KMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQE 232

Query: 453 AETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
            + L  +V+K + ++      A  + L  K G +E+A
Sbjct: 233 GKQLHAHVVKMQYLSETAVGNA-LLTLYSKCGMMEEA 268


>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
          Length = 767

 Score =  300 bits (768), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 194/600 (32%), Positives = 320/600 (53%), Gaps = 36/600 (6%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           QT   +   +    + SN    P+++KACA A       LQ+H    + G  AD   + +
Sbjct: 34  QTALTFFTRMQAHAVPSNNFTFPALLKACA-ALRRLLPTLQVHAYLTRLGLAADRFSAAA 92

Query: 69  LISMYAKFSKPESAYQLFDEMPYR--DTISWNSIINCFTQNGFYVRSLEMFREMYL---- 122
           L+  Y K      A Q+FDEMP    D +SW ++I+ ++ NG    +   F  M      
Sbjct: 93  LVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVDEAFXAFGRMRWMRGW 152

Query: 123 -----CGFVLKAELLAGIISLCS-QIGE--LELGRQIHALVIVDGSFELSVFVSTALLDL 174
                CG  + +  L  ++S C+   G   L  G  +H LV+  G F +S  +  +++ +
Sbjct: 153 DGSECCGVDVVS--LGALVSACAVGCGSNCLRRGSAVHGLVVKYG-FGVSTHLGNSMVHM 209

Query: 175 YSKCHHWLIALRVFEQMVI--RNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG---VKP 229
           YS C     A RVF  + I  R+ VSW ++ISG   +   +  +  F  M  EG   V+P
Sbjct: 210 YSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEAERALRTFEDMVSEGTSAVEP 269

Query: 230 TRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDF----DHHLSAALMHMYCECTEALHP 285
            RVT+  +L +CAEL  +     +H Y            D  +  AL+ M+  C   L  
Sbjct: 270 NRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGN-LAL 328

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE------RIEPNSVTLLAI 339
           AR IF+  + K+VV WS++I GY Q     EA++LF +M +E       ++PN+VTL+++
Sbjct: 329 AREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSV 388

Query: 340 LSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEM--AAR 397
           +++C+R         +H Y +  GL+ D  I +AL++M +KCG I    Q+F+EM  + R
Sbjct: 389 IAACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTR 448

Query: 398 DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLF 457
             VSW+++I   G HG G+ AL+LF EM+  G EP+ IT +++LSAC+HAGLV++ ++ F
Sbjct: 449 TVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGKSCF 508

Query: 458 NNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGR 517
           N++ K+  ++   +HYAC VDLLG++G +++A  V+  MP+K    +  SL++AC +HG 
Sbjct: 509 NSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLAACHLHGN 568

Query: 518 LEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            ++ E++  +++  +  +  ++ LL+ +  ++G W     +   +R  GL K  G S IE
Sbjct: 569 CKLGEIVEKKILSLDSNSVGHHVLLANMYEDAGRWDDVVRMRVELRRSGLRKIPGQSFIE 628



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 147/501 (29%), Positives = 238/501 (47%), Gaps = 53/501 (10%)

Query: 89  MPYRDTISWNSII-NCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELEL 147
           + ++DT  WNS+I    TQN     +L  F  M              ++  C+ +  L  
Sbjct: 13  ISHKDTFHWNSLIAKNATQNP--QTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLP 70

Query: 148 GRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV--IRNEVSWTAMIS- 204
             Q+HA +   G      F + AL+D Y KC H   A +VF++M     + VSWTA+IS 
Sbjct: 71  TLQVHAYLTRLG-LAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISA 129

Query: 205 ----GCIDSQNYDTGIDLFRAMQ----REGVKPTRVTLTIVLLACA---ELRDLRNGKAI 253
               GC+D      G    R M+     E      V+L  ++ ACA       LR G A+
Sbjct: 130 YSSNGCVDEAFXAFG--RMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAV 187

Query: 254 HGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV--KDVVIWSSIIRGYSQS 311
           HG     GF    HL  +++HMY  C +     R +F    +  +DVV W+S+I G+  +
Sbjct: 188 HGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWR-VFNGIPIEQRDVVSWNSLISGFXLN 246

Query: 312 GDLSEAMKLFSRMRLE---RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF-- 366
           G+   A++ F  M  E    +EPN VT++A+L SC     +     VH YI     +   
Sbjct: 247 GEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLV 306

Query: 367 --DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
             DV +  AL++M+++CG++  + +IF+ +  ++ V W+ +I+GY      EEAL+LF +
Sbjct: 307 AKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQ 366

Query: 425 MQESG------VEPDAITVLAILSACNHAGLVKEAETLFN-----NVMKEKKIALAIEHY 473
           M   G      V+P+A+T++++++AC+  G  + A  +        + ++ +IA A+   
Sbjct: 367 MLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQDARIASAL--- 423

Query: 474 ACYVDLLGKSGKIEDACKVVSTMPMKPSTRIL---SSLVSACRIHGRLEVA-EMLAHQLI 529
              +D+  K G IE   +V S   M  STR +   SS++ A  IHG  + A E+ +    
Sbjct: 424 ---IDMCAKCGDIEHGRQVFS--EMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRT 478

Query: 530 EAEPENAANYTLLSMVCSESG 550
                N   Y  +   CS +G
Sbjct: 479 GGYEPNEITYISVLSACSHAG 499


>gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
          Length = 1166

 Score =  300 bits (768), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 163/525 (31%), Positives = 286/525 (54%), Gaps = 3/525 (0%)

Query: 46  FGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT 105
           +G  +H   +K G D++  I N+L+++Y++  + E A  +F  M  RD ISWNS++ C+ 
Sbjct: 416 WGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYV 475

Query: 106 QNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSV 165
           Q+G  +  L++  E+   G V+     A  ++ CS    L   + +HAL+IV G F   +
Sbjct: 476 QDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAG-FHDFL 534

Query: 166 FVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
            V  AL+ +Y K    + A +V + M   + V+W A+I G  +++  +  +  ++ ++ +
Sbjct: 535 IVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREK 594

Query: 226 GVKPTRVTLTIVLLACAELRDL-RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
           G+    +T+  VL AC+   DL ++G  IH +    GF+ D ++  +L+ MY +C + L+
Sbjct: 595 GIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGD-LN 653

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
            +  IF+    K  + W++++   +  G   EA+K+F  MR   +  +  +    L++  
Sbjct: 654 SSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATA 713

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
             + L  G  +H  ++K G   D+ + NA M+MY KCG +    ++  +   R  +SW  
Sbjct: 714 NLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNI 773

Query: 405 LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK 464
           LIS +  HG  ++A + F EM + G +PD +T +++LSACNH GLV E    ++++ +E 
Sbjct: 774 LISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREF 833

Query: 465 KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEML 524
            +   IEH  C +DLLG+SG++  A   +  MP+ P+     SL++ACRIHG LE+A   
Sbjct: 834 GVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKT 893

Query: 525 AHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSK 569
           A  L+E +P + + Y L S VC+ SG W   E + + M +  + K
Sbjct: 894 AEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKK 938



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 133/471 (28%), Positives = 245/471 (52%), Gaps = 5/471 (1%)

Query: 42  THQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSII 101
           T Q  G  LH   +    +     +N+LI+MY+KF   E A  +FDEM +R+  SW++++
Sbjct: 108 TSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTML 167

Query: 102 NCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL-ELGRQIHALVIVDGS 160
           + + + G Y  ++ +F +M+  G      ++A +I+ CS+ G + + G Q+H  V+  G 
Sbjct: 168 SGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGI 227

Query: 161 FELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFR 220
               V+V TAL+  Y        A ++FE+M   N VSWT+++ G  DS N    +++++
Sbjct: 228 LG-DVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQ 286

Query: 221 AMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECT 280
            M++EGV   + T   V  +C  L D   G  + G+    GF+    ++ +L+ M+   +
Sbjct: 287 RMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFS 346

Query: 281 EALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAIL 340
            ++  A  +F+     D++ W+++I  Y+  G   E+++ F  MR    E NS TL ++L
Sbjct: 347 -SVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLL 405

Query: 341 SSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFV 400
           S C+    L  G G+H  ++K GL+ +V I N L+ +YS+ G    +  +F  M  RD +
Sbjct: 406 SVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLI 465

Query: 401 SWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNV 460
           SW ++++ Y   G   + L++  E+ + G   + +T  + L+AC++   + E++ +   +
Sbjct: 466 SWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALI 525

Query: 461 MKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSA 511
           +        I   A  V + GK G + +A KV+ TMP +P     ++L+  
Sbjct: 526 IVAGFHDFLIVGNA-LVTMYGKLGMMMEAKKVLQTMP-QPDRVTWNALIGG 574



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 116/440 (26%), Positives = 215/440 (48%), Gaps = 3/440 (0%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
            YE+ + L+ Q +   G+  N  ++ S+I AC+ +      G Q+H   +K+G   D  +
Sbjct: 175 LYEEAVGLFCQ-MWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYV 233

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
             +L+  Y       +A +LF+EMP  + +SW S++  ++ +G     L +++ M   G 
Sbjct: 234 GTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGV 293

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
                  A + S C  + +  LG Q+   +I  G FE SV V+ +L+ ++S       A 
Sbjct: 294 SGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYG-FEDSVSVANSLISMFSSFSSVEEAC 352

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
            VF+ M   + +SW AMIS           +  F  M+    +    TL+ +L  C+ + 
Sbjct: 353 YVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVD 412

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
           +L+ G+ IHG     G D +  +   L+ +Y E   +   A ++F+    +D++ W+S++
Sbjct: 413 NLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRS-EDAELVFQAMTERDLISWNSMM 471

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
             Y Q G   + +K+ + +       N VT  + L++C+    L     VH  I+ AG +
Sbjct: 472 ACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFH 531

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
             + +GNAL+ MY K G +  + ++   M   D V+W  LI G+  +    EA++ +  +
Sbjct: 532 DFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLI 591

Query: 426 QESGVEPDAITVLAILSACN 445
           +E G+  + IT++++L AC+
Sbjct: 592 REKGIPANYITMVSVLGACS 611



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 140/322 (43%), Gaps = 35/322 (10%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G+ +N   + SV+ AC+        G+ +H   + +G ++D  + NSLI+MYAK     S
Sbjct: 595 GIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNS 654

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           +  +FD +  +  I+WN+++     +G    +L++F EM   G  L     +G ++  + 
Sbjct: 655 SNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATAN 714

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
           +  LE G+Q+H LVI  G FE  + V+ A +D+Y KC      L++  Q + R+ +SW  
Sbjct: 715 LAVLEEGQQLHGLVIKLG-FESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNI 773

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           +IS       +    + F  M + G KP  VT   +L AC        G    G AY   
Sbjct: 774 LISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACN-----HGGLVDEGLAYYDS 828

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
              +  +   + H  C                          II    +SG LS A    
Sbjct: 829 MTREFGVFPGIEHCVC--------------------------IIDLLGRSGRLSHAEGFI 862

Query: 322 SRMRLERIEPNSVTLLAILSSC 343
             M    + PN +   ++L++C
Sbjct: 863 KEM---PVPPNDLAWRSLLAAC 881


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1724

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 163/525 (31%), Positives = 286/525 (54%), Gaps = 3/525 (0%)

Query: 46   FGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT 105
            +G  +H   +K G D++  I N+L+++Y++  + E A  +F  M  RD ISWNS++ C+ 
Sbjct: 1066 WGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYV 1125

Query: 106  QNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSV 165
            Q+G  +  L++  E+   G V+     A  ++ CS    L   + +HAL+IV G F   +
Sbjct: 1126 QDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAG-FHDFL 1184

Query: 166  FVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
             V  AL+ +Y K    + A +V + M   + V+W A+I G  +++  +  +  ++ ++ +
Sbjct: 1185 IVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREK 1244

Query: 226  GVKPTRVTLTIVLLACAELRDL-RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
            G+    +T+  VL AC+   DL ++G  IH +    GF+ D ++  +L+ MY +C + L+
Sbjct: 1245 GIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGD-LN 1303

Query: 285  PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
             +  IF+    K  + W++++   +  G   EA+K+F  MR   +  +  +    L++  
Sbjct: 1304 SSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATA 1363

Query: 345  RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
              + L  G  +H  ++K G   D+ + NA M+MY KCG +    ++  +   R  +SW  
Sbjct: 1364 NLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNI 1423

Query: 405  LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK 464
            LIS +  HG  ++A + F EM + G +PD +T +++LSACNH GLV E    ++++ +E 
Sbjct: 1424 LISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREF 1483

Query: 465  KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEML 524
             +   IEH  C +DLLG+SG++  A   +  MP+ P+     SL++ACRIHG LE+A   
Sbjct: 1484 GVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKT 1543

Query: 525  AHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSK 569
            A  L+E +P + + Y L S VC+ SG W   E + + M +  + K
Sbjct: 1544 AEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKK 1588



 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 165/529 (31%), Positives = 285/529 (53%), Gaps = 3/529 (0%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G  +H   + +G  +D  ++  LI  Y K     +A  +FD MP R  +SW ++++ ++Q
Sbjct: 49  GHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQ 108

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           NG + ++  +F +M  CG           +  C+ +  L++G Q+    I  G F  ++F
Sbjct: 109 NGRFEKAFVLFSDMRHCGVKANQFTYGSALRACTSLRCLDMGIQVQG-CIQKGRFVENLF 167

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           V +AL+D +SKC     A  +F  M+ R+ VSW AMI G       D    +FR+M R G
Sbjct: 168 VKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGG 227

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           + P   TL  VL A AE   L     IHG     G+     ++  L++ Y +   +L  A
Sbjct: 228 LVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAK-NGSLRSA 286

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLS-EAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           + + +    KD+   +++I GY+  G  S +A+ LF  M    I  + V L ++L+ C  
Sbjct: 287 KDLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICAN 346

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
            +  + G  +H + +K   ++DV++GNAL++MY+K G I  + + F+EM  ++ +SWT+L
Sbjct: 347 LASFALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSL 406

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           ISGY  HGYG  A+ L+ +M+  G +P+ +T L++L AC+H GL  E    FNN++ +  
Sbjct: 407 ISGYAKHGYGHMAVSLYKKMESKGFKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYN 466

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
           I    EHY+C VDL  + G +E+A  ++  + +K +  +  +++ A  I+G + + +  A
Sbjct: 467 IKPRAEHYSCMVDLFARQGLLEEAYNLLCKIDIKHNASLWGAILGASSIYGYMSLGKEAA 526

Query: 526 HQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFS 574
             L   +PEN+ NY +L+ + S +G W  A ++ ++M  +   K+ G+S
Sbjct: 527 SNLFNMQPENSVNYVVLASIYSAAGLWDDAWKIRKLMEERSTKKNAGYS 575



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 133/471 (28%), Positives = 245/471 (52%), Gaps = 5/471 (1%)

Query: 42   THQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSII 101
            T Q  G  LH   +    +     +N+LI+MY+KF   E A  +FDEM +R+  SW++++
Sbjct: 758  TSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTML 817

Query: 102  NCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL-ELGRQIHALVIVDGS 160
            + + + G Y  ++ +F +M+  G      ++A +I+ CS+ G + + G Q+H  V+  G 
Sbjct: 818  SGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGI 877

Query: 161  FELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFR 220
                V+V TAL+  Y        A ++FE+M   N VSWT+++ G  DS N    +++++
Sbjct: 878  LG-DVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQ 936

Query: 221  AMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECT 280
             M++EGV   + T   V  +C  L D   G  + G+    GF+    ++ +L+ M+   +
Sbjct: 937  RMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFS 996

Query: 281  EALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAIL 340
             ++  A  +F+     D++ W+++I  Y+  G   E+++ F  MR    E NS TL ++L
Sbjct: 997  -SVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLL 1055

Query: 341  SSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFV 400
            S C+    L  G G+H  ++K GL+ +V I N L+ +YS+ G    +  +F  M  RD +
Sbjct: 1056 SVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLI 1115

Query: 401  SWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNV 460
            SW ++++ Y   G   + L++  E+ + G   + +T  + L+AC++   + E++ +   +
Sbjct: 1116 SWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALI 1175

Query: 461  MKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSA 511
            +        I   A  V + GK G + +A KV+ TMP +P     ++L+  
Sbjct: 1176 IVAGFHDFLIVGNA-LVTMYGKLGMMMEAKKVLQTMP-QPDRVTWNALIGG 1224



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 116/440 (26%), Positives = 215/440 (48%), Gaps = 3/440 (0%)

Query: 6    FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
             YE+ + L+ Q +   G+  N  ++ S+I AC+ +      G Q+H   +K+G   D  +
Sbjct: 825  LYEEAVGLFCQ-MWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYV 883

Query: 66   SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
              +L+  Y       +A +LF+EMP  + +SW S++  ++ +G     L +++ M   G 
Sbjct: 884  GTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGV 943

Query: 126  VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
                   A + S C  + +  LG Q+   +I  G FE SV V+ +L+ ++S       A 
Sbjct: 944  SGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYG-FEDSVSVANSLISMFSSFSSVEEAC 1002

Query: 186  RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
             VF+ M   + +SW AMIS           +  F  M+    +    TL+ +L  C+ + 
Sbjct: 1003 YVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVD 1062

Query: 246  DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
            +L+ G+ IHG     G D +  +   L+ +Y E   +   A ++F+    +D++ W+S++
Sbjct: 1063 NLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRS-EDAELVFQAMTERDLISWNSMM 1121

Query: 306  RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
              Y Q G   + +K+ + +       N VT  + L++C+    L     VH  I+ AG +
Sbjct: 1122 ACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFH 1181

Query: 366  FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
              + +GNAL+ MY K G +  + ++   M   D V+W  LI G+  +    EA++ +  +
Sbjct: 1182 DFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLI 1241

Query: 426  QESGVEPDAITVLAILSACN 445
            +E G+  + IT++++L AC+
Sbjct: 1242 REKGIPANYITMVSVLGACS 1261



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 119/234 (50%), Gaps = 4/234 (1%)

Query: 218 LFRAMQREGVKPTRVTLTI---VLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMH 274
           L  A++     PTR+  ++   +L  C + +  + G  IH +    GF  D HL+  L+ 
Sbjct: 14  LAEALKLLSSNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLII 73

Query: 275 MYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSV 334
            Y +  + +  AR +F+    + VV W++++ GYSQ+G   +A  LFS MR   ++ N  
Sbjct: 74  FYVKVGDVI-AARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQF 132

Query: 335 TLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEM 394
           T  + L +CT    L  G+ V   I K     ++ + +AL++ +SKCG +  +  +F  M
Sbjct: 133 TYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTM 192

Query: 395 AARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG 448
             RD VSW  +I GY   G+ +++  +F  M   G+ PD  T+ ++L A    G
Sbjct: 193 MERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGG 246



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 113/224 (50%), Gaps = 1/224 (0%)

Query: 18   LHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFS 77
            +   G+ +N   + SV+ AC+        G+ +H   + +G ++D  + NSLI+MYAK  
Sbjct: 1241 IREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCG 1300

Query: 78   KPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS 137
               S+  +FD +  +  I+WN+++     +G    +L++F EM   G  L     +G ++
Sbjct: 1301 DLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLA 1360

Query: 138  LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197
              + +  LE G+Q+H LVI  G FE  + V+ A +D+Y KC      L++  Q + R+ +
Sbjct: 1361 ATANLAVLEEGQQLHGLVIKLG-FESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRL 1419

Query: 198  SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
            SW  +IS       +    + F  M + G KP  VT   +L AC
Sbjct: 1420 SWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSAC 1463



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 89/185 (48%), Gaps = 4/185 (2%)

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
           G L+EA+KL S     R++P+    L IL  C  +     G  +H +++  G   D+ + 
Sbjct: 12  GRLAEALKLLSS-NPTRLDPS--LYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLN 68

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
             L+  Y K G + ++  +F+ M  R  VSWT ++SGY  +G  E+A  LF +M+  GV+
Sbjct: 69  TKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVK 128

Query: 432 PDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACK 491
            +  T  + L AC     +     +   + K + +       A  VD   K GK+EDA  
Sbjct: 129 ANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSA-LVDFHSKCGKMEDASY 187

Query: 492 VVSTM 496
           +  TM
Sbjct: 188 LFGTM 192


>gi|222635654|gb|EEE65786.1| hypothetical protein OsJ_21486 [Oryza sativa Japonica Group]
          Length = 749

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 176/559 (31%), Positives = 291/559 (52%), Gaps = 5/559 (0%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           SG  ++   L S ++AC         G Q+H  ALKS   +D ++ N+L++MY+K    +
Sbjct: 129 SGTAADQFALGSAVRACT-ELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVD 187

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAG-IISLC 139
             + LF+ +  +D ISW SII  F Q GF + +L++FREM + G     E   G     C
Sbjct: 188 DGFMLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRAC 247

Query: 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSW 199
             +G  E G QIH L I     +  ++V  +L D+Y++C +   A   F ++   + VSW
Sbjct: 248 GAVGSWEYGEQIHGLSI-KYRLDRDLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSW 306

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
            ++++           + LF  M+  G++P  +T+  +L AC     L +G+ IH Y   
Sbjct: 307 NSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVK 366

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
            G D D  +  +L+ MY  C++ L  A  +F   K +DVV W+SI+   +Q     E +K
Sbjct: 367 LGLDGDVSVCNSLLSMYARCSD-LSSAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLK 425

Query: 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           LFS +       + ++L  +LS+     +      VH Y  KAGL  D  + N L++ Y+
Sbjct: 426 LFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYA 485

Query: 380 KCGSITSSHQIFNEMAA-RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
           KCGS+  + ++F  M   RD  SW++LI GY   GY +EA  LF  M+  G+ P+ +T +
Sbjct: 486 KCGSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEAFDLFSRMRSLGIRPNHVTFI 545

Query: 439 AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPM 498
            +L+AC+  G V E    ++ +  E  I    EH +C VDLL ++GK+ +A   +  MP 
Sbjct: 546 GVLTACSRVGFVNEGCYYYSIMEPEYGIVPTREHCSCIVDLLARAGKLTEAANFIDQMPF 605

Query: 499 KPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEV 558
           +P   +  +L++A ++H  +E+ +  A  ++  +P ++A Y LL  + + SGNW     +
Sbjct: 606 EPDIIMWKTLLAASKMHNDMEMGKRAAEGILNIDPSHSAAYVLLCNIYAASGNWNEFARL 665

Query: 559 WRVMRAKGLSKSYGFSRIE 577
            + MR  G+ KS G S ++
Sbjct: 666 KKAMRTSGVKKSPGKSWVK 684



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 131/457 (28%), Positives = 224/457 (49%), Gaps = 35/457 (7%)

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
            + V+ N LI+MY                  R+ +SW S+I    QNG    +L +F  M
Sbjct: 84  GNTVLGNHLITMYG-----------------RNPVSWASVIAAHVQNGRAGDALGLFSSM 126

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVD--GSFELSVFVSTALLDLYSKC 178
              G       L   +  C+++G++  GRQ+HA  +    GS    + V  AL+ +YSK 
Sbjct: 127 LRSGTAADQFALGSAVRACTELGDVGTGRQVHAHALKSERGS---DLIVQNALVTMYSKN 183

Query: 179 HHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK-PTRVTLTIV 237
                   +FE++  ++ +SW ++I+G          + +FR M  EG   P        
Sbjct: 184 GLVDDGFMLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSA 243

Query: 238 LLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKD 297
             AC  +     G+ IHG +     D D ++  +L  MY  C   L  AR+ F R +  D
Sbjct: 244 FRACGAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARCKN-LDSARVAFYRIEAPD 302

Query: 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHC 357
           +V W+SI+  YS  G LSEA+ LFS MR   + P+ +T+  +L +C  +  L HG  +H 
Sbjct: 303 LVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHS 362

Query: 358 YIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEE 417
           Y++K GL+ DVS+ N+L++MY++C  ++S+  +F+E+  +D V+W ++++    H + EE
Sbjct: 363 YLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSILTACAQHNHPEE 422

Query: 418 ALQLFLEMQESGVEPDAITVLAILSACNHAG---LVKE--AETLFNNVMKEKKIALAIEH 472
            L+LF  + +S    D I++  +LSA    G   +VK+  A      ++ ++ ++  +  
Sbjct: 423 VLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKAGLVDDRMLSNTL-- 480

Query: 473 YACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLV 509
               +D   K G ++DA ++   M         SSL+
Sbjct: 481 ----IDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLI 513


>gi|359483750|ref|XP_002269533.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Vitis vinifera]
          Length = 847

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 167/533 (31%), Positives = 282/533 (52%), Gaps = 37/533 (6%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G Q+HC  +K G ++D  ++NSL+ MYAK    +SA  +F  MP    +SWN +I  + Q
Sbjct: 271 GQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQ 330

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
                +++E  + M   GF         ++  C + G++E GRQ+               
Sbjct: 331 KSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQM--------------- 375

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
                                F+ M   +  SW  ++SG   ++N+   + LFR MQ   
Sbjct: 376 ---------------------FDGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRS 414

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           V P R TL I+L + A +  L  G+ +H  +    F  D +L++ L+ MY +C + +  A
Sbjct: 415 VHPDRTTLAIILSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGK-VEMA 473

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
           + IF+R    D+V W+S++ G S +    EA   F +MR + + P+  +   +LS C + 
Sbjct: 474 KRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKL 533

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
           S LS G  VH  I + G   D  +G+AL++MYSKCG + ++  +F+ M  ++ V+W  +I
Sbjct: 534 SSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNTVTWNEMI 593

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
            GY  +G G+EA+ L+ +M  SG +PD IT +A+L+AC+H+GLV     +FN++ +E  +
Sbjct: 594 HGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVAVLTACSHSGLVDTGIKIFNSMQQEHGV 653

Query: 467 ALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAH 526
              ++HY C +D LG++G++ +A  ++  MP K    I   L+S+CR++  + +A   A 
Sbjct: 654 EPLVDHYTCIIDSLGRAGRLHEAEVLIDKMPCKYDPIIWEVLLSSCRVYADVSLARRAAE 713

Query: 527 QLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIENE 579
           +L   +P+N+A Y LL+ + S  G W  A+ V  +M    + K  G+S IE++
Sbjct: 714 ELFHLDPQNSAPYVLLANIYSSLGRWDDAKAVRELMSYNQVVKDPGYSWIEHK 766



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 144/514 (28%), Positives = 234/514 (45%), Gaps = 86/514 (16%)

Query: 25  SNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQ 84
           + T  L S+++ C   + H   G  +H   L+S    D  +SN LI  YAK +  +++ +
Sbjct: 3   TKTTYLASLLQTCIDKKAHLA-GKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRR 61

Query: 85  LFDEMPYRD-------------------------------TISWNSIINCFTQNGFYVRS 113
           LFD+MP RD                                +SWN++I+  T+NGF  ++
Sbjct: 62  LFDQMPKRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKA 121

Query: 114 LEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLD 173
           L ++  M   GFV     LA ++S C  + ++E GR+ H + I  G  + +++V  ALL 
Sbjct: 122 LGVYYRMSREGFVPTHFTLASVLSACGALVDVECGRRCHGISIKIG-LDNNIYVGNALLG 180

Query: 174 LYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVT 233
           +Y+KC     A++ F  +   NEVS+TAM+ G  DS   +    LFR M R  +    V+
Sbjct: 181 MYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVS 240

Query: 234 LTIVLLACAE-------LRDLRN--GKAIHGYAYCC-----GFDFDHHLSAALMHMYCEC 279
           L+ VL  C+        L D  +     +HG    C     GF+ D HL+ +L+ MY + 
Sbjct: 241 LSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAK- 299

Query: 280 TEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAI 339
              +  A +IF       VV W+ +I GY Q    S+A++   RM+    EP+ +T + +
Sbjct: 300 NGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNM 359

Query: 340 LSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDF 399
           L +C                                    K G I +  Q+F+ M++   
Sbjct: 360 LVACI-----------------------------------KSGDIEAGRQMFDGMSSPSL 384

Query: 400 VSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG-LVKEAETLFN 458
            SW T++SGY  +   +EA++LF EMQ   V PD  T+  ILS+   AG ++ E     +
Sbjct: 385 SSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSL--AGMMLLEGGRQVH 442

Query: 459 NVMKEKKIALAIEHYACYVDLLGKSGKIEDACKV 492
            V ++      I   +  + +  K GK+E A ++
Sbjct: 443 AVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRI 476



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 96/375 (25%), Positives = 187/375 (49%), Gaps = 15/375 (4%)

Query: 35  KACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDT 94
           KA  Y Q  Q+ G +            D +   +++    K    E+  Q+FD M     
Sbjct: 336 KAIEYLQRMQYHGFE-----------PDEITYVNMLVACIKSGDIEAGRQMFDGMSSPSL 384

Query: 95  ISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHAL 154
            SWN+I++ ++QN  +  ++++FREM           LA I+S  + +  LE GRQ+HA 
Sbjct: 385 SSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQVHA- 443

Query: 155 VIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDT 214
           V     F   +++++ L+ +YSKC    +A R+F+++   + V W +M++G   +     
Sbjct: 444 VSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKE 503

Query: 215 GIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMH 274
               F+ M+ +G+ P++ +   VL  CA+L  L  G+ +H      G+  D  + +AL+ 
Sbjct: 504 AFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSALID 563

Query: 275 MYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSV 334
           MY +C + +  AR +F+    K+ V W+ +I GY+Q+G   EA+ L+  M     +P+ +
Sbjct: 564 MYSKCGD-VDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGI 622

Query: 335 TLLAILSSCTRQSFLSHGLGVHCYIMKA-GLNFDVSIGNALMNMYSKCGSITSSHQIFNE 393
           T +A+L++C+    +  G+ +   + +  G+   V     +++   + G +  +  + ++
Sbjct: 623 TFVAVLTACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLGRAGRLHEAEVLIDK 682

Query: 394 MAAR-DFVSWTTLIS 407
           M  + D + W  L+S
Sbjct: 683 MPCKYDPIIWEVLLS 697



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 121/240 (50%), Gaps = 14/240 (5%)

Query: 271 ALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE 330
           A++  YC+ +E L  A ++F     +++V W+++I   +++G   +A+ ++ RM  E   
Sbjct: 76  AILGAYCKASE-LEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGVYYRMSREGFV 134

Query: 331 PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQI 390
           P   TL ++LS+C     +  G   H   +K GL+ ++ +GNAL+ MY+KC  I  + Q 
Sbjct: 135 PTHFTLASVLSACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQA 194

Query: 391 FNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHA--- 447
           F ++   + VS+T ++ G        EA +LF  M  + +  D++++ ++L  C+     
Sbjct: 195 FGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCG 254

Query: 448 --GLVKEAETLFNNVMKEKKIALAIEH--------YACYVDLLGKSGKIEDACKVVSTMP 497
             GL    + L ++V  ++   L I+H            +D+  K+G ++ A  +   MP
Sbjct: 255 EFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMP 314



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 31/147 (21%)

Query: 329 IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSH 388
           +E  +  L ++L +C  +     G  +H +++++ L+ D  + N L+  Y+KC +I +S 
Sbjct: 1   METKTTYLASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASR 60

Query: 389 QIFNEMAARD-------------------------------FVSWTTLISGYGFHGYGEE 417
           ++F++M  RD                                VSW TLIS    +G+ ++
Sbjct: 61  RLFDQMPKRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQK 120

Query: 418 ALQLFLEMQESGVEPDAITVLAILSAC 444
           AL ++  M   G  P   T+ ++LSAC
Sbjct: 121 ALGVYYRMSREGFVPTHFTLASVLSAC 147



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/192 (21%), Positives = 90/192 (46%), Gaps = 2/192 (1%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           +++   G++ +     +V+  CA   +    G Q+H    + G   D  + ++LI MY+K
Sbjct: 509 KKMREKGMFPSQFSYATVLSCCAKLSSLSQ-GRQVHSQIAREGYMNDAFVGSALIDMYSK 567

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
               ++A  +FD M  ++T++WN +I+ + QNG    ++ ++ +M   G          +
Sbjct: 568 CGDVDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVAV 627

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR- 194
           ++ CS  G ++ G +I   +  +   E  V   T ++D   +      A  + ++M  + 
Sbjct: 628 LTACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLGRAGRLHEAEVLIDKMPCKY 687

Query: 195 NEVSWTAMISGC 206
           + + W  ++S C
Sbjct: 688 DPIIWEVLLSSC 699


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 167/529 (31%), Positives = 288/529 (54%), Gaps = 2/529 (0%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
            +H   L+ G D D  + N ++     F     ++++ D+    +   +N++I     N 
Sbjct: 28  HIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRGLVLND 87

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
            +  S+E++  M   G    +     ++  C+++ + ELG ++H+LV+  G  E   FV 
Sbjct: 88  CFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGC-EADAFVK 146

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
            +L++LY+KC     A +VF+ +  +N  SWTA ISG +        ID+FR +   G++
Sbjct: 147 ISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLR 206

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
           P   +L  VL AC    DLR+G+ I  Y    G   +  ++ AL+  Y +C   +  AR 
Sbjct: 207 PDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGN-MERARS 265

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
           +F+    K++V WSS+I+GY+ +G   EA+ LF +M  E ++P+   ++ +L SC R   
Sbjct: 266 VFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGA 325

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
           L  G      I       +  +G AL++MY+KCG +  + ++F  M  +D V W   ISG
Sbjct: 326 LELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISG 385

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468
               G+ ++AL LF +M++SG++PD  T + +L AC HAGLV+E    FN++     +  
Sbjct: 386 LAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVFTLTP 445

Query: 469 AIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
            IEHY C VDLLG++G +++A +++ +MPM+ +  +  +L+  CR+H   ++ E++  +L
Sbjct: 446 EIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRLHRDTQLVEVVLKKL 505

Query: 529 IEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           I  EP ++ NY LLS + + S  W  A ++  +M  +G+ K  G+S IE
Sbjct: 506 IALEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGVKKIPGYSWIE 554



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 114/411 (27%), Positives = 205/411 (49%), Gaps = 12/411 (2%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           +++++ +Y   +   GL  ++   P V+KACA     +  G+++H   +K+G +AD  + 
Sbjct: 89  FQESIEIY-HSMRKEGLSPDSFTFPFVLKACARVLDSE-LGVKMHSLVVKAGCEADAFVK 146

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
            SLI++Y K    ++A+++FD++P ++  SW + I+ +   G    +++MFR +   G  
Sbjct: 147 ISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLR 206

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
             +  L  ++S C + G+L  G  I   +  +G    +VFV+TAL+D Y KC +   A  
Sbjct: 207 PDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVR-NVFVATALVDFYGKCGNMERARS 265

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VF+ M+ +N VSW++MI G   +      +DLF  M  EG+KP    +  VL +CA L  
Sbjct: 266 VFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGA 325

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L  G           F  +  L  AL+ MY +C   +  A  +F   + KD V+W++ I 
Sbjct: 326 LELGDWASNLINGNEFLDNSVLGTALIDMYAKCGR-MDRAWEVFRGMRKKDRVVWNAAIS 384

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGL----GVHCYIMKA 362
           G + SG + +A+ LF +M    I+P+  T + +L +CT    +  G      + C     
Sbjct: 385 GLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVFT-- 442

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFH 412
            L  ++     ++++  + G +  +HQ+   M    + + W  L+ G   H
Sbjct: 443 -LTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRLH 492



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/219 (19%), Positives = 89/219 (40%), Gaps = 37/219 (16%)

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
           S L H   +H  +++ GL+ D  + N ++      G+   S +I ++    +   + T+I
Sbjct: 21  SCLKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMI 80

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC---------------------- 444
            G   +   +E+++++  M++ G+ PD+ T   +L AC                      
Sbjct: 81  RGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCE 140

Query: 445 -------------NHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACK 491
                           G +  A  +F+++  +K  A      + YV  +GK  +  D  +
Sbjct: 141 ADAFVKISLINLYTKCGFIDNAFKVFDDI-PDKNFASWTATISGYVG-VGKCREAIDMFR 198

Query: 492 VVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE 530
            +  M ++P +  L  ++SAC+  G L   E +   + E
Sbjct: 199 RLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITE 237


>gi|317106770|dbj|BAJ53262.1| JMS10C05.5 [Jatropha curcas]
          Length = 638

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 188/574 (32%), Positives = 298/574 (51%), Gaps = 8/574 (1%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           +E  L++   E+H SG   N      +++AC+ +  ++ FG Q HC  +K G D + V+ 
Sbjct: 22  FESALNI-ASEMHKSGEALNEHTCSVILQACS-SPDYRIFGQQFHCFVIKCGFDENVVVG 79

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
            SLI+MY +      A ++FD M  +D   +N +I  + + G   +++ +F  M   G  
Sbjct: 80  TSLIAMYTRSKLFGDAEKVFDSMACKDVRCFNFMILEYARAGNGEKAIRVFINMLNAGLQ 139

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
                   IIS C     +E G Q   L    G F     +  A++++Y K      A R
Sbjct: 140 PNDYTFTNIISACDGDLGIEEGEQFLGLSFKYG-FLNETSIGNAIINMYGKKGMAREAER 198

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           +F  M  RN +SWTA+ISG   S +    +D F  +   GV      LT +L  C+E R+
Sbjct: 199 MFSAMTDRNLISWTALISGYTRSGDGKKAVDTFMELHLCGVNFDSSLLTTILDGCSECRN 258

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L  G  IHG     G+    ++  AL+ +Y +C   L  AR++F+    K +  +++I+ 
Sbjct: 259 LELGLQIHGLVIKLGYACAVNIGTALVDLYAKCGN-LMSARMVFDGLSSKRIASFNAILA 317

Query: 307 GY---SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           G+   S+ G+  + + LF+  RL+ I+P+ VT   +LS     S L  G   H Y +K G
Sbjct: 318 GFMENSRDGE-EDPIVLFNHFRLDGIKPDMVTFSRLLSLSANHSTLGRGRCYHAYAIKTG 376

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
              D+S+ NA++ MY+KCGSI  +H++FN M   D +SW  +IS Y  HG G + L LF 
Sbjct: 377 FEADLSVANAVITMYAKCGSIEEAHRMFNVMNDHDSISWNAMISAYALHGQGAKVLLLFE 436

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS 483
           EM +    PD IT+L+IL AC ++GL ++  +LFN +  +  I   +EHYAC VDLLG++
Sbjct: 437 EMIKKEFAPDEITILSILQACTYSGLFRDGISLFNVMEPKYGIKPLLEHYACMVDLLGRA 496

Query: 484 GKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLS 543
           G + +A  +++  P   ST +  +LV+ C++ G     ++ +  L+E  P  A +Y L+S
Sbjct: 497 GHLSEAMDIINKSPFSKSTLLWRTLVNVCKLCGDRNFGKLASKYLLELSPVEAGSYILVS 556

Query: 544 MVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            + +       A +V  VM    LSK  G S IE
Sbjct: 557 NMYAGERMLDEAAKVRTVMNDLKLSKEAGTSWIE 590



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 124/486 (25%), Positives = 242/486 (49%), Gaps = 19/486 (3%)

Query: 89  MPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELG 148
           M  R+TI+W S+I  +  +  +  +L +  EM+  G  L     + I+  CS       G
Sbjct: 1   MLVRNTITWTSLIKGYLDDNEFESALNIASEMHKSGEALNEHTCSVILQACSSPDYRIFG 60

Query: 149 RQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCID 208
           +Q H  VI  G F+ +V V T+L+ +Y++   +  A +VF+ M  ++   +  MI     
Sbjct: 61  QQFHCFVIKCG-FDENVVVGTSLIAMYTRSKLFGDAEKVFDSMACKDVRCFNFMILEYAR 119

Query: 209 SQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHL 268
           + N +  I +F  M   G++P   T T ++ AC     +  G+   G ++  GF  +  +
Sbjct: 120 AGNGEKAIRVFINMLNAGLQPNDYTFTNIISACDGDLGIEEGEQFLGLSFKYGFLNETSI 179

Query: 269 SAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER 328
             A+++MY +   A    R +F     ++++ W+++I GY++SGD  +A+  F  + L  
Sbjct: 180 GNAIINMYGKKGMAREAER-MFSAMTDRNLISWTALISGYTRSGDGKKAVDTFMELHLCG 238

Query: 329 IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSH 388
           +  +S  L  IL  C+    L  GL +H  ++K G    V+IG AL+++Y+KCG++ S+ 
Sbjct: 239 VNFDSSLLTTILDGCSECRNLELGLQIHGLVIKLGYACAVNIGTALVDLYAKCGNLMSAR 298

Query: 389 QIFNEMAARDFVSWTTLISGYGFHGYG--EEALQLFLEMQESGVEPDAITVLAILS-ACN 445
            +F+ ++++   S+  +++G+  +     E+ + LF   +  G++PD +T   +LS + N
Sbjct: 299 MVFDGLSSKRIASFNAILAGFMENSRDGEEDPIVLFNHFRLDGIKPDMVTFSRLLSLSAN 358

Query: 446 HAGLVK----EAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPS 501
           H+ L +     A  +      +  +A A+      + +  K G IE+A ++ + M    S
Sbjct: 359 HSTLGRGRCYHAYAIKTGFEADLSVANAV------ITMYAKCGSIEEAHRMFNVMNDHDS 412

Query: 502 TRILSSLVSACRIHGRLEVAEMLAHQLIEAE--PENAANYTLLSMVCSESGNWLGAEEVW 559
               ++++SA  +HG+     +L  ++I+ E  P+     ++L   C+ SG +     ++
Sbjct: 413 IS-WNAMISAYALHGQGAKVLLLFEEMIKKEFAPDEITILSILQ-ACTYSGLFRDGISLF 470

Query: 560 RVMRAK 565
            VM  K
Sbjct: 471 NVMEPK 476


>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 185/596 (31%), Positives = 307/596 (51%), Gaps = 60/596 (10%)

Query: 35  KACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDT 94
           K CA + T      QLH     +G    P  S  LI  YA+    ES+ ++FD  P  D+
Sbjct: 356 KRCATSTTLT----QLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDS 411

Query: 95  ISWNSIINCFTQNGFYVRSLEMFREM----------YLCGFVLKA--------------- 129
             W  +I C+   GF+  ++ ++ EM          ++   VLKA               
Sbjct: 412 FMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKNGQ 471

Query: 130 -----ELLAGIIS---------------LCSQIGELELGR--------QIHALVIVDGSF 161
                ++ + +IS                CS++G L LGR         +H  VI     
Sbjct: 472 ASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIRRAMD 531

Query: 162 ELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRA 221
               F+  AL++LY+   +     +VFE +  +  +SW  +IS    +   +  + LF  
Sbjct: 532 PELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQ 591

Query: 222 MQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTE 281
           MQ +G+ P   +L   L AC  +   + G  IHGY    G +F+  +  AL+ MY +C  
Sbjct: 592 MQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTG-NFNDFVQNALIDMYAKCG- 649

Query: 282 ALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILS 341
            +H A  +FE+ K K +V W+S+I G+SQ+G   EA+ LF +M +  ++ + +T L+++ 
Sbjct: 650 FVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQ 709

Query: 342 SCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS 401
           +C+   +L  G  VH  ++  GL  D  +  AL +MYSKCG +  +H +F+ M+ R  VS
Sbjct: 710 ACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVS 769

Query: 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVM 461
           W+ +I+GYG HG     + LF +M  SG++P+ IT + ILSAC+HAG V+E +  FN+ M
Sbjct: 770 WSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNS-M 828

Query: 462 KEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA 521
            E  +    +H+AC VDLL ++G +  A ++++++P   ++ I  +L++ CRIH R+++ 
Sbjct: 829 SEFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRIDII 888

Query: 522 EMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           + +   L++ +  +   YTLLS + +E G W    +V  +M++KGL K  G+S IE
Sbjct: 889 KSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIE 944


>gi|255583011|ref|XP_002532274.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528034|gb|EEF30114.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 631

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 184/595 (30%), Positives = 300/595 (50%), Gaps = 48/595 (8%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           N  IL SVI AC   Q       Q+H  A+KSG D +  +  SL+ +YAK    + A  +
Sbjct: 41  NEYILASVISACV--QVGGSIDKQMHGFAVKSGFDRNVYVGTSLVDLYAKGGNIDEARLV 98

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL 145
           FD +  +  ++W +II    + G    SL++F +M     V    +L+ ++  CSQ+  +
Sbjct: 99  FDGLLEKSAVTWTTIITACVKRGRSEVSLQLFSQMRETNVVPDGYILSSVLGACSQLEFV 158

Query: 146 ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISG 205
           + G+QIH  V+  G  E+ V     L+D Y+K      A ++F+ M  RN +SWTAMI+G
Sbjct: 159 QGGKQIHGHVLRRG-IEIDVSFVNVLIDFYTKSGKVQSARKLFDGMADRNVISWTAMIAG 217

Query: 206 CIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFD 265
            + +      + LF  M R G +P     T +L +C  L  L  G+ +H Y+     + D
Sbjct: 218 YMQNSFDREAVKLFIEMTRLGRRPDGFVCTSILTSCGSLEALELGRQVHAYSIKGNVESD 277

Query: 266 HHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR 325
             L   L+ MY +C  +L+ AR +F+   +++VV ++++I GYS    LSEAM LF  MR
Sbjct: 278 IFLQNGLIDMYAKCG-SLNDARKVFDDMTIRNVVSYNALIEGYSTLEQLSEAMNLFREMR 336

Query: 326 LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSIT 385
              + P+ +T +++L +    S L  G  +H  I K G++ ++  G+AL++ YSKC  + 
Sbjct: 337 HGMLSPSFLTFVSLLGASATLSALELGKQIHALITKFGISMEIFAGSALIDFYSKCSCLM 396

Query: 386 SSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC- 444
            +  +F++M  +D V W  ++ GY      EEAL+L+ E+Q S  +P+ +T  A+ +A  
Sbjct: 397 DARLVFDKMTEKDIVVWNAMLFGYTQQLENEEALKLYTELQISEPKPNVVTFAALTTAAS 456

Query: 445 ------------NH----------------------AGLVKEAETLFNNV---------M 461
                       NH                       G +++A   F +V         M
Sbjct: 457 NLASLQHGQQFHNHIIKTGLDSHPFTTNSLIDMYAKCGSLEDARKAFGHVKDGLHYFESM 516

Query: 462 KEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA 521
            +  I    EHYAC V LLG+SGK+ +A + +  MP +P   +  SL+SACR+ G +E+ 
Sbjct: 517 PKFSIKPGTEHYACVVSLLGRSGKLYEAKEFIEKMPTEPEAVVWRSLLSACRVSGNVELG 576

Query: 522 EMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
           +  A + I  +  ++ +YTLLS + +  G W+  ++V   M   G+ K  G S I
Sbjct: 577 KYAAEKAISIDSTDSGSYTLLSNIYASKGMWVDVKKVRERMDIAGVVKEAGHSWI 631



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 117/357 (32%), Positives = 200/357 (56%), Gaps = 6/357 (1%)

Query: 89  MPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE-LLAGIISLCSQIGELEL 147
           MP R+ ISW+S+++ +++ GF   +L +F +   C      E +LA +IS C Q+G   +
Sbjct: 1   MPERNLISWSSVVSMYSKRGFSEEALLVFLDFKRCCNENPNEYILASVISACVQVGG-SI 59

Query: 148 GRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCI 207
            +Q+H   +  G F+ +V+V T+L+DLY+K  +   A  VF+ ++ ++ V+WT +I+ C+
Sbjct: 60  DKQMHGFAVKSG-FDRNVYVGTSLVDLYAKGGNIDEARLVFDGLLEKSAVTWTTIITACV 118

Query: 208 DSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
                +  + LF  M+   V P    L+ VL AC++L  ++ GK IHG+    G + D  
Sbjct: 119 KRGRSEVSLQLFSQMRETNVVPDGYILSSVLGACSQLEFVQGGKQIHGHVLRRGIEIDVS 178

Query: 268 LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM-RL 326
               L+  Y +  + +  AR +F+    ++V+ W+++I GY Q+    EA+KLF  M RL
Sbjct: 179 FVNVLIDFYTKSGK-VQSARKLFDGMADRNVISWTAMIAGYMQNSFDREAVKLFIEMTRL 237

Query: 327 ERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITS 386
            R  P+     +IL+SC     L  G  VH Y +K  +  D+ + N L++MY+KCGS+  
Sbjct: 238 GR-RPDGFVCTSILTSCGSLEALELGRQVHAYSIKGNVESDIFLQNGLIDMYAKCGSLND 296

Query: 387 SHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
           + ++F++M  R+ VS+  LI GY       EA+ LF EM+   + P  +T +++L A
Sbjct: 297 ARKVFDDMTIRNVVSYNALIEGYSTLEQLSEAMNLFREMRHGMLSPSFLTFVSLLGA 353



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 72/140 (51%), Gaps = 8/140 (5%)

Query: 394 MAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE-PDAITVLAILSACNHAG--LV 450
           M  R+ +SW++++S Y   G+ EEAL +FL+ +    E P+   + +++SAC   G  + 
Sbjct: 1   MPERNLISWSSVVSMYSKRGFSEEALLVFLDFKRCCNENPNEYILASVISACVQVGGSID 60

Query: 451 KEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVS 510
           K+          ++ + +        VDL  K G I++A ++V    ++ S    +++++
Sbjct: 61  KQMHGFAVKSGFDRNVYVG----TSLVDLYAKGGNIDEA-RLVFDGLLEKSAVTWTTIIT 115

Query: 511 ACRIHGRLEVAEMLAHQLIE 530
           AC   GR EV+  L  Q+ E
Sbjct: 116 ACVKRGRSEVSLQLFSQMRE 135


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 182/564 (32%), Positives = 301/564 (53%), Gaps = 17/564 (3%)

Query: 27  TAILPSVIKAC-----AYAQTHQHFGLQLHCTALKSGSDADPVIS-NSLISMYAKFSKP- 79
           TA LP+  +A      A  +    +  QLH   +KSG       S +SL+   A  + P 
Sbjct: 7   TAALPTPGRAGPAPPRAPLRADPSYLPQLHAALIKSGELTGSAKSFHSLLEAAA--ASPT 64

Query: 80  --ESAYQLF--DEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
               A  LF     P   T  +N ++  F   G    +L +F EM        A+     
Sbjct: 65  LLPYAVSLFRLGPRPPLSTPCYNVLMRAFLHAGHPEDALHLFIEMLHAASACPADQHTAA 124

Query: 136 ISL--CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI 193
            +L  CS++  L++GR + A  +  G      FV ++L+ +Y+ C     A  VF+    
Sbjct: 125 CALKSCSRMCALDVGRGVQAYAVKRG-LVADRFVLSSLIHMYASCGDVAAARLVFDAAEE 183

Query: 194 RNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAI 253
              V W A+++  + + ++   +++F+ M   GV    VTL  V+ AC  + D + GK +
Sbjct: 184 SGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWV 243

Query: 254 HGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGD 313
            G+    G   +  L  ALM MY +C E +  AR +F+  + +DVV WS++I GY+Q+  
Sbjct: 244 AGHVDEEGLARNPKLVTALMDMYAKCGE-IGKARRLFDGMQSRDVVAWSAMISGYTQADQ 302

Query: 314 LSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNA 373
             EA+ LFS M+L R+EPN VT++++LS+C     L  G  VH Y+ +  L+    +G A
Sbjct: 303 CREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTA 362

Query: 374 LMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPD 433
           L++ Y+KCG I  + + F  M  ++  +WT LI G   +G G EAL+LF  M+E+G+EP 
Sbjct: 363 LVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGIEPT 422

Query: 434 AITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVV 493
            +T + +L AC+H+ LV+E    F+++ ++  I   +EHY C VDLLG++G +++A + +
Sbjct: 423 DVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFI 482

Query: 494 STMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWL 553
            TMP++P+  I  +L+S+C +H  + + E    Q+I   P ++ +Y LLS + + +G W 
Sbjct: 483 RTMPIEPNAVIWRALLSSCAVHRNVGIGEEALKQIISLNPSHSGDYVLLSNIYASAGQWK 542

Query: 554 GAEEVWRVMRAKGLSKSYGFSRIE 577
            A  V + M+ +G+ K+ G S IE
Sbjct: 543 DAAMVRKEMKDRGIEKTPGCSLIE 566



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 129/431 (29%), Positives = 203/431 (47%), Gaps = 17/431 (3%)

Query: 8   EQTLHLYKQELH-----PSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDAD 62
           E  LHL+ + LH     P+  ++    L S  + CA        G  +   A+K G  AD
Sbjct: 100 EDALHLFIEMLHAASACPADQHTAACALKSCSRMCAL-----DVGRGVQAYAVKRGLVAD 154

Query: 63  PVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL 122
             + +SLI MYA      +A  +FD       + WN+I+  + +NG ++  +EMF+ M  
Sbjct: 155 RFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLE 214

Query: 123 CGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL 182
            G       L  +++ C +IG+ +LG+ +   V  +G       V TAL+D+Y+KC    
Sbjct: 215 VGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLV-TALMDMYAKCGEIG 273

Query: 183 IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
            A R+F+ M  R+ V+W+AMISG   +      + LF  MQ   V+P  VT+  VL ACA
Sbjct: 274 KARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACA 333

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
            L  L  GK +H Y           L  AL+  Y +C   +  A   FE   VK+   W+
Sbjct: 334 VLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCG-CIDDAVEAFESMPVKNSWTWT 392

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG-VHCYIMK 361
           ++I+G + +G   EA++LFS MR   IEP  VT + +L +C+    +  G          
Sbjct: 393 ALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARD 452

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFH---GYGEE 417
            G+   V     ++++  + G +  ++Q    M    + V W  L+S    H   G GEE
Sbjct: 453 YGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIGEE 512

Query: 418 ALQLFLEMQES 428
           AL+  + +  S
Sbjct: 513 ALKQIISLNPS 523


>gi|297740913|emb|CBI31095.3| unnamed protein product [Vitis vinifera]
          Length = 768

 Score =  299 bits (766), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 167/533 (31%), Positives = 282/533 (52%), Gaps = 37/533 (6%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G Q+HC  +K G ++D  ++NSL+ MYAK    +SA  +F  MP    +SWN +I  + Q
Sbjct: 242 GQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQ 301

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
                +++E  + M   GF         ++  C + G++E GRQ+               
Sbjct: 302 KSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQM--------------- 346

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
                                F+ M   +  SW  ++SG   ++N+   + LFR MQ   
Sbjct: 347 ---------------------FDGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRS 385

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           V P R TL I+L + A +  L  G+ +H  +    F  D +L++ L+ MY +C + +  A
Sbjct: 386 VHPDRTTLAIILSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGK-VEMA 444

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
           + IF+R    D+V W+S++ G S +    EA   F +MR + + P+  +   +LS C + 
Sbjct: 445 KRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKL 504

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
           S LS G  VH  I + G   D  +G+AL++MYSKCG + ++  +F+ M  ++ V+W  +I
Sbjct: 505 SSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNTVTWNEMI 564

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
            GY  +G G+EA+ L+ +M  SG +PD IT +A+L+AC+H+GLV     +FN++ +E  +
Sbjct: 565 HGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVAVLTACSHSGLVDTGIKIFNSMQQEHGV 624

Query: 467 ALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAH 526
              ++HY C +D LG++G++ +A  ++  MP K    I   L+S+CR++  + +A   A 
Sbjct: 625 EPLVDHYTCIIDSLGRAGRLHEAEVLIDKMPCKYDPIIWEVLLSSCRVYADVSLARRAAE 684

Query: 527 QLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIENE 579
           +L   +P+N+A Y LL+ + S  G W  A+ V  +M    + K  G+S IE++
Sbjct: 685 ELFHLDPQNSAPYVLLANIYSSLGRWDDAKAVRELMSYNQVVKDPGYSWIEHK 737



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 136/485 (28%), Positives = 225/485 (46%), Gaps = 57/485 (11%)

Query: 25  SNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQ 84
           + T  L S+++ C   + H   G  +H   L+S    D  +SN LI  YAK +  +++ +
Sbjct: 3   TKTTYLASLLQTCIDKKAHLA-GKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRR 61

Query: 85  LFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII--SLCSQI 142
           LFD+MP RD  +WN+I+  + +      +  +F EM     V    L++ +     C  +
Sbjct: 62  LFDQMPKRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGACGAL 121

Query: 143 GELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAM 202
            ++E GR+ H + I  G  + +++V  ALL +Y+KC     A++ F  +   NEVS+TAM
Sbjct: 122 VDVECGRRCHGISIKIG-LDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAM 180

Query: 203 ISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE-------LRDLRN--GKAI 253
           + G  DS   +    LFR M R  +    V+L+ VL  C+        L D  +     +
Sbjct: 181 MGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDV 240

Query: 254 HGYAYCC-----GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
           HG    C     GF+ D HL+ +L+ MY +    +  A +IF       VV W+ +I GY
Sbjct: 241 HGQQVHCLTIKHGFESDLHLNNSLLDMYAK-NGNMDSAEMIFVNMPEVSVVSWNVMIAGY 299

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
            Q    S+A++   RM+    EP+ +T + +L +C                         
Sbjct: 300 GQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACI------------------------ 335

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
                      K G I +  Q+F+ M++    SW T++SGY  +   +EA++LF EMQ  
Sbjct: 336 -----------KSGDIEAGRQMFDGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFR 384

Query: 429 GVEPDAITVLAILSACNHAG-LVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487
            V PD  T+  ILS+   AG ++ E     + V ++      I   +  + +  K GK+E
Sbjct: 385 SVHPDRTTLAIILSSL--AGMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVE 442

Query: 488 DACKV 492
            A ++
Sbjct: 443 MAKRI 447



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 96/375 (25%), Positives = 187/375 (49%), Gaps = 15/375 (4%)

Query: 35  KACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDT 94
           KA  Y Q  Q+ G +            D +   +++    K    E+  Q+FD M     
Sbjct: 307 KAIEYLQRMQYHGFE-----------PDEITYVNMLVACIKSGDIEAGRQMFDGMSSPSL 355

Query: 95  ISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHAL 154
            SWN+I++ ++QN  +  ++++FREM           LA I+S  + +  LE GRQ+HA 
Sbjct: 356 SSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQVHA- 414

Query: 155 VIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDT 214
           V     F   +++++ L+ +YSKC    +A R+F+++   + V W +M++G   +     
Sbjct: 415 VSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKE 474

Query: 215 GIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMH 274
               F+ M+ +G+ P++ +   VL  CA+L  L  G+ +H      G+  D  + +AL+ 
Sbjct: 475 AFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSALID 534

Query: 275 MYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSV 334
           MY +C + +  AR +F+    K+ V W+ +I GY+Q+G   EA+ L+  M     +P+ +
Sbjct: 535 MYSKCGD-VDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGI 593

Query: 335 TLLAILSSCTRQSFLSHGLGVHCYIMKA-GLNFDVSIGNALMNMYSKCGSITSSHQIFNE 393
           T +A+L++C+    +  G+ +   + +  G+   V     +++   + G +  +  + ++
Sbjct: 594 TFVAVLTACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLGRAGRLHEAEVLIDK 653

Query: 394 MAAR-DFVSWTTLIS 407
           M  + D + W  L+S
Sbjct: 654 MPCKYDPIIWEVLLS 668



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/192 (21%), Positives = 90/192 (46%), Gaps = 2/192 (1%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           +++   G++ +     +V+  CA   +    G Q+H    + G   D  + ++LI MY+K
Sbjct: 480 KKMREKGMFPSQFSYATVLSCCAKLSSLSQ-GRQVHSQIAREGYMNDAFVGSALIDMYSK 538

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
               ++A  +FD M  ++T++WN +I+ + QNG    ++ ++ +M   G          +
Sbjct: 539 CGDVDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVAV 598

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR- 194
           ++ CS  G ++ G +I   +  +   E  V   T ++D   +      A  + ++M  + 
Sbjct: 599 LTACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLGRAGRLHEAEVLIDKMPCKY 658

Query: 195 NEVSWTAMISGC 206
           + + W  ++S C
Sbjct: 659 DPIIWEVLLSSC 670



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 55/102 (53%)

Query: 329 IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSH 388
           +E  +  L ++L +C  +     G  +H +++++ L+ D  + N L+  Y+KC +I +S 
Sbjct: 1   METKTTYLASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASR 60

Query: 389 QIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV 430
           ++F++M  RD  +W  ++  Y      E+A  LF EM E  +
Sbjct: 61  RLFDQMPKRDIYTWNAILGAYCKASELEDAHVLFAEMPERNI 102


>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
           [Vitis vinifera]
 gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
          Length = 618

 Score =  299 bits (766), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 183/582 (31%), Positives = 304/582 (52%), Gaps = 18/582 (3%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           ++S+HF   T  L K + H     ++   L S++K C   ++ Q    Q+   A+     
Sbjct: 10  LISRHF---TKALAKSQRHAQQTLTDK--LLSLLKQCTSTKSLQQIHTQMIINAIHK--- 61

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQN-GFYVRSLEMFRE 119
                 N L+  +       +A  LF ++PY +  ++N +I   T     +  ++E + +
Sbjct: 62  -----PNFLLHRFIDLKDFNNASLLFSQIPYPNEYAFNIMIRGLTTTWQKFNLTIEFYYQ 116

Query: 120 MYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH 179
           M   G          +   C+ +  L  G+  H+ V+  G       V  +L+ +YS+C 
Sbjct: 117 MKDFGIRPNNFTYPFVFIACANLLVLNHGQCAHSGVLKSG-LCADGHVRHSLITMYSRCG 175

Query: 180 HWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLL 239
               A RVF+++  ++ VSW +MISG          + LF  M+  G +P  +TL  +L 
Sbjct: 176 ELGCARRVFDEISEKDLVSWNSMISGYSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILG 235

Query: 240 ACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVV 299
           AC +L DL  G  I G+      D +  + +AL+ MY +C + L  AR +F+R   KDVV
Sbjct: 236 ACGDLGDLGLGSWIEGFVVENEMDLNSFVGSALIGMYGKCGD-LSSARRVFDRMVKKDVV 294

Query: 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
            W+++I GY+Q+G   EA+ LFS MR   + P+ +TL+ +LS+C     L  G  +  Y 
Sbjct: 295 TWNAMITGYAQNGVSDEAIILFSGMRESGVNPDKITLVGVLSACASIGALDFGKWLDTYA 354

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEAL 419
            + GL  D+ +  AL++MY+KCGS+  + ++F +M  ++ VSW  +IS   FHG  +E+L
Sbjct: 355 SERGLQNDIYVSTALIDMYAKCGSLDDALRVFEDMPQKNEVSWNAMISALAFHGRPQESL 414

Query: 420 QLFLEMQESG--VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYV 477
            LF  M + G  V P+ I+ + +LSAC HAGLV E   LF+ +     +   IEH++C V
Sbjct: 415 SLFKRMSKEGGAVRPNDISFIGVLSACVHAGLVDEGRQLFDLMSSSFGLVPKIEHHSCMV 474

Query: 478 DLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAA 537
           DLL ++G + +A   +  MP KP   +L +L+ AC+    ++V+E + H L+E EP N+ 
Sbjct: 475 DLLARAGHVHEAWDFIEKMPEKPDEVVLGALLGACQKRRNVDVSERVMHMLLEMEPLNSG 534

Query: 538 NYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIENE 579
           NY + S + +    W  +  +  +MR +G++K+ G S IE E
Sbjct: 535 NYIISSKIFANMKRWDDSARMRVLMRQRGVTKTPGCSWIEIE 576


>gi|125591533|gb|EAZ31883.1| hypothetical protein OsJ_16048 [Oryza sativa Japonica Group]
          Length = 674

 Score =  299 bits (766), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 177/539 (32%), Positives = 305/539 (56%), Gaps = 12/539 (2%)

Query: 48  LQLHCTALKSGSD--ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT 105
            QL+   +K G +   D  + +S I M+++F   +SA ++FD    ++T  WN++I  + 
Sbjct: 102 FQLYGLLVKYGVEYINDLFVVSSAIDMFSEFGDVQSARRVFDRAAKKNTEVWNTMITGYV 161

Query: 106 QNGFYVRSLEMFREMYLCGFV-LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELS 164
           QNG +  ++++F ++     V L        ++  SQ  ++ LG+Q+H  +I      L 
Sbjct: 162 QNGQFSEAIDLFSKILGSREVPLDVVTFLSALTAASQSQDVSLGQQLHGYLIKGMHRTLP 221

Query: 165 VFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR 224
           V +  AL+ +YS+C +   A  +F+++  ++ V+W  M++  I +     G+ L   MQ+
Sbjct: 222 VILGNALVVMYSRCGNVQTAFDLFDRLPEKDIVTWNTMVTAFIQNDFDLEGLLLVYEMQK 281

Query: 225 EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
            G     VTLT VL A +   DL+ GK  HGY    G +    L + L+ MY +      
Sbjct: 282 SGFAADSVTLTAVLSASSNTGDLQIGKQAHGYLIRHGIE-GEGLESYLIDMYAKSGRVEM 340

Query: 285 PARII--FERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSS 342
             R+   F+  K +D V W+++I GY+QSG   +A+ +F  M    +EP SVTL ++L +
Sbjct: 341 AQRVFDSFKNAK-RDEVTWNAMIAGYTQSGQPEKAILVFRAMLEAGLEPTSVTLASVLPA 399

Query: 343 CTR-QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS 401
           C      +  G  +HC+ ++  L+ +V +G AL++MYSKCG IT++  +F  M  +  V+
Sbjct: 400 CDPVGGGVYSGKQIHCFAVRRCLDTNVFVGTALIDMYSKCGEITTAENVFGGMTGKSTVT 459

Query: 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVM 461
           +TT+ISG G HG+G++AL LF  MQE G++PDA+T L+ +SACN++GLV E   L+ + M
Sbjct: 460 YTTMISGLGQHGFGKKALALFNSMQEKGLKPDAVTFLSAISACNYSGLVDEGLALYRS-M 518

Query: 462 KEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPS-TRILSSLVSACRIHGRLEV 520
               I+   +H+ C  DLL K+G++E+A + +  +  + +   I  SL+++C+  G+ E+
Sbjct: 519 DSFGISATPQHHCCVADLLAKAGRVEEAYEFIEGLGEEGNFVAIWGSLLASCKAQGKQEL 578

Query: 521 AEMLAHQLIEAEPE--NAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           A+++  +L++ E +  +A    LLS V +   NW  A+ + + MRA+GL K  G S I+
Sbjct: 579 AKLVTKKLLDIEKQYGHAGYSVLLSQVLAAESNWNSADSLRKEMRARGLKKEAGSSWIK 637



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 140/521 (26%), Positives = 254/521 (48%), Gaps = 21/521 (4%)

Query: 64  VISNSLISMYA-----KFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFR 118
           V+ NSL+++YA     + ++ +   +LFD MP R+ +SWN++   + + G    +LE+F 
Sbjct: 13  VLRNSLLNLYASSVRYREARVDVVRRLFDAMPKRNVVSWNTLFGWYVKTGRPQEALELFV 72

Query: 119 EMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDG-SFELSVFVSTALLDLYSK 177
            M   GF         I    +   +     Q++ L++  G  +   +FV ++ +D++S+
Sbjct: 73  RMLEDGFRPTPVSFVNIFP-AAVADDPSWPFQLYGLLVKYGVEYINDLFVVSSAIDMFSE 131

Query: 178 CHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM--QREGVKPTRVTLT 235
                 A RVF++   +N   W  MI+G + +  +   IDLF  +   RE V    VT  
Sbjct: 132 FGDVQSARRVFDRAAKKNTEVWNTMITGYVQNGQFSEAIDLFSKILGSRE-VPLDVVTFL 190

Query: 236 IVLLACAELRDLRNGKAIHGYAYCCGF--DFDHHLSAALMHMYCECTEALHPARIIFERT 293
             L A ++ +D+  G+ +HGY    G        L  AL+ MY  C   +  A  +F+R 
Sbjct: 191 SALTAASQSQDVSLGQQLHGY-LIKGMHRTLPVILGNALVVMYSRCGN-VQTAFDLFDRL 248

Query: 294 KVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGL 353
             KD+V W++++  + Q+    E + L   M+      +SVTL A+LS+ +    L  G 
Sbjct: 249 PEKDIVTWNTMVTAFIQNDFDLEGLLLVYEMQKSGFAADSVTLTAVLSASSNTGDLQIGK 308

Query: 354 GVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEM--AARDFVSWTTLISGYGF 411
             H Y+++ G+  +  + + L++MY+K G +  + ++F+    A RD V+W  +I+GY  
Sbjct: 309 QAHGYLIRHGIEGE-GLESYLIDMYAKSGRVEMAQRVFDSFKNAKRDEVTWNAMIAGYTQ 367

Query: 412 HGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIE 471
            G  E+A+ +F  M E+G+EP ++T+ ++L AC+  G    +    +     + +   + 
Sbjct: 368 SGQPEKAILVFRAMLEAGLEPTSVTLASVLPACDPVGGGVYSGKQIHCFAVRRCLDTNVF 427

Query: 472 HYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA 531
                +D+  K G+I  A  V   M  K ST   ++++S    HG  + A  L + + E 
Sbjct: 428 VGTALIDMYSKCGEITTAENVFGGMTGK-STVTYTTMISGLGQHGFGKKALALFNSMQEK 486

Query: 532 EPENAANYTLLSMV--CSESGNWLGAEEVWRVMRAKGLSKS 570
             +  A  T LS +  C+ SG       ++R M + G+S +
Sbjct: 487 GLKPDA-VTFLSAISACNYSGLVDEGLALYRSMDSFGISAT 526



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 71/141 (50%), Gaps = 1/141 (0%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E+ + +++  L  +GL   +  L SV+ AC       + G Q+HC A++   D +  +  
Sbjct: 372 EKAILVFRAMLE-AGLEPTSVTLASVLPACDPVGGGVYSGKQIHCFAVRRCLDTNVFVGT 430

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +LI MY+K  +  +A  +F  M  + T+++ ++I+   Q+GF  ++L +F  M   G   
Sbjct: 431 ALIDMYSKCGEITTAENVFGGMTGKSTVTYTTMISGLGQHGFGKKALALFNSMQEKGLKP 490

Query: 128 KAELLAGIISLCSQIGELELG 148
            A      IS C+  G ++ G
Sbjct: 491 DAVTFLSAISACNYSGLVDEG 511


>gi|302784186|ref|XP_002973865.1| hypothetical protein SELMODRAFT_100621 [Selaginella moellendorffii]
 gi|300158197|gb|EFJ24820.1| hypothetical protein SELMODRAFT_100621 [Selaginella moellendorffii]
          Length = 616

 Score =  299 bits (766), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 169/526 (32%), Positives = 287/526 (54%), Gaps = 16/526 (3%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G ++H   +K+G   +  + N L+ MY+K    E A ++FD M  RD+ISW+ +I  + +
Sbjct: 86  GKKIHEHVVKNGYYENVYVGNHLVQMYSKCGSLEDAKKVFDGMRRRDSISWSKMIAGYVR 145

Query: 107 NGFYVRSLEMFREMYLC--GFVLKAELLAGIISLCSQIGE--LELGRQIHALVIVDGSFE 162
           +G    ++++++ M +   GF   A     +++ CS +G   LE+G++IHA  +     +
Sbjct: 146 HGLAREAIKLYKAMAIDPDGFTFSA-----VLNACSSLGPRALEVGKEIHAH-MKRIWLK 199

Query: 163 LSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM 222
             VFV +AL+ +++KC     +  VF+    ++ + W +MI     S +    I+LF++M
Sbjct: 200 PDVFVDSALVTMFAKCGSLKESREVFDDCRWKDVLFWNSMIVAYSQSGHPREAIELFKSM 259

Query: 223 --QREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECT 280
                 V+P  +T T VL AC+ + DL  GK +H      GF FD     +L++MY +C 
Sbjct: 260 GSSSPPVEPNAITYTTVLAACSAVEDLEQGKEVHRQMVDAGFQFDAAAENSLVNMYAKCG 319

Query: 281 EALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAIL 340
            ++  AR +F+  K + VV W+ II  Y + G   EA+ L+ +M  E +EPN +T  ++L
Sbjct: 320 -SITEAREVFDGMKQRTVVSWTGIISAYVRKGHPREALDLYRKMGSEGVEPNGITFASVL 378

Query: 341 SSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFV 400
           S+C+    L  G  VH  +  AG   D+++ NAL+++Y KCGS+ S+ ++F+ M  R+ V
Sbjct: 379 SACSSLGALEEGKAVHAQMKAAGYKPDLAVANALVSLYGKCGSVDSARKVFDRMKIRNVV 438

Query: 401 SWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNV 460
           SWT +IS Y  H + EEA+QL+  M   GV+  +     +L+AC+ AGL++ A   F  +
Sbjct: 439 SWTAMISAYAHHRHSEEAIQLYKAMDLEGVQASSFIYGTVLTACSQAGLLESARHYFGCL 498

Query: 461 MKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEV 520
            ++      +E Y C   +LG++G++ +A ++++ MP +        L++AC+ H  +E 
Sbjct: 499 TRDCGAPAKLEDYVCMATVLGRAGRLAEAEELLAVMPFEAEFVAWMGLLAACKAHNDVER 558

Query: 521 AEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566
              +A  L   EP N A Y LLS +   +G     EE  RV R  G
Sbjct: 559 GARVAEVLFRLEPLNEAPYVLLSNIYVAAGR---QEEAARVRRKMG 601



 Score =  225 bits (574), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 145/421 (34%), Positives = 233/421 (55%), Gaps = 16/421 (3%)

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
           +L    GEL  G++IH  V+ +G +E +V+V   L+ +YSKC     A +VF+ M  R+ 
Sbjct: 75  NLLRDCGELAAGKKIHEHVVKNGYYE-NVYVGNHLVQMYSKCGSLEDAKKVFDGMRRRDS 133

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL--RDLRNGKAIH 254
           +SW+ MI+G +        I L++AM    + P   T + VL AC+ L  R L  GK IH
Sbjct: 134 ISWSKMIAGYVRHGLAREAIKLYKAM---AIDPDGFTFSAVLNACSSLGPRALEVGKEIH 190

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
            +        D  + +AL+ M+ +C  +L  +R +F+  + KDV+ W+S+I  YSQSG  
Sbjct: 191 AHMKRIWLKPDVFVDSALVTMFAKCG-SLKESREVFDDCRWKDVLFWNSMIVAYSQSGHP 249

Query: 315 SEAMKLFSRM--RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN 372
            EA++LF  M      +EPN++T   +L++C+    L  G  VH  ++ AG  FD +  N
Sbjct: 250 REAIELFKSMGSSSPPVEPNAITYTTVLAACSAVEDLEQGKEVHRQMVDAGFQFDAAAEN 309

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
           +L+NMY+KCGSIT + ++F+ M  R  VSWT +IS Y   G+  EAL L+ +M   GVEP
Sbjct: 310 SLVNMYAKCGSITEAREVFDGMKQRTVVSWTGIISAYVRKGHPREALDLYRKMGSEGVEP 369

Query: 433 DAITVLAILSACNHAGLVKEAETLFNNVMKEK-KIALAIEHYACYVDLLGKSGKIEDACK 491
           + IT  ++LSAC+  G ++E + +   +     K  LA+ +    V L GK G ++ A K
Sbjct: 370 NGITFASVLSACSSLGALEEGKAVHAQMKAAGYKPDLAVAN--ALVSLYGKCGSVDSARK 427

Query: 492 VVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAAN--YTLLSMVCSES 549
           V   M ++ +    ++++SA   H   E A  L ++ ++ E   A++  Y  +   CS++
Sbjct: 428 VFDRMKIR-NVVSWTAMISAYAHHRHSEEAIQL-YKAMDLEGVQASSFIYGTVLTACSQA 485

Query: 550 G 550
           G
Sbjct: 486 G 486



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 166/364 (45%), Gaps = 50/364 (13%)

Query: 6   FYEQTLHLYKQELHP--------------SGLYSNTAILPSVIKACAYAQTHQHFGLQLH 51
           F+   +  Y Q  HP                +  N     +V+ AC+  +  +  G ++H
Sbjct: 235 FWNSMIVAYSQSGHPREAIELFKSMGSSSPPVEPNAITYTTVLAACSAVEDLEQ-GKEVH 293

Query: 52  CTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYV 111
              + +G   D    NSL++MYAK      A ++FD M  R  +SW  II+ + + G   
Sbjct: 294 RQMVDAGFQFDAAAENSLVNMYAKCGSITEAREVFDGMKQRTVVSWTGIISAYVRKGHPR 353

Query: 112 RSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTAL 171
            +L+++R+M   G        A ++S CS +G LE G+ +HA +   G ++  + V+ AL
Sbjct: 354 EALDLYRKMGSEGVEPNGITFASVLSACSSLGALEEGKAVHAQMKAAG-YKPDLAVANAL 412

Query: 172 LDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTR 231
           + LY KC     A +VF++M IRN VSWTAMIS     ++ +  I L++AM  EGV+ + 
Sbjct: 413 VSLYGKCGSVDSARKVFDRMKIRNVVSWTAMISAYAHHRHSEEAIQLYKAMDLEGVQASS 472

Query: 232 VTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFE 291
                VL AC++   L + +   G                     C   +   PA     
Sbjct: 473 FIYGTVLTACSQAGLLESARHYFG---------------------CLTRDCGAPA----- 506

Query: 292 RTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSH 351
             K++D V  ++++    ++G L+EA +L + M     E   V  + +L++C   + +  
Sbjct: 507 --KLEDYVCMATVL---GRAGRLAEAEELLAVMPF---EAEFVAWMGLLAACKAHNDVER 558

Query: 352 GLGV 355
           G  V
Sbjct: 559 GARV 562



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 127/256 (49%), Gaps = 43/256 (16%)

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
           L+ G  +H +++K G   +V +GN L+ MYSKCGS+  + ++F+ M  RD +SW+ +I+G
Sbjct: 83  LAAGKKIHEHVVKNGYYENVYVGNHLVQMYSKCGSLEDAKKVFDGMRRRDSISWSKMIAG 142

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG-----LVKEAETLFNNVMKE 463
           Y  HG   EA++L+  M    ++PD  T  A+L+AC+  G     + KE       +  +
Sbjct: 143 YVRHGLAREAIKLYKAM---AIDPDGFTFSAVLNACSSLGPRALEVGKEIHAHMKRIWLK 199

Query: 464 KKI----ALAIEHYAC--------------YVDLL---------GKSGKIEDACKVVSTM 496
             +    AL      C              + D+L          +SG   +A ++  +M
Sbjct: 200 PDVFVDSALVTMFAKCGSLKESREVFDDCRWKDVLFWNSMIVAYSQSGHPREAIELFKSM 259

Query: 497 -----PMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLSMVCSES 549
                P++P+    +++++AC     LE  + +  Q+++A  + + AA  +L++M  ++ 
Sbjct: 260 GSSSPPVEPNAITYTTVLAACSAVEDLEQGKEVHRQMVDAGFQFDAAAENSLVNMY-AKC 318

Query: 550 GNWLGAEEVWRVMRAK 565
           G+   A EV+  M+ +
Sbjct: 319 GSITEAREVFDGMKQR 334


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 178/566 (31%), Positives = 303/566 (53%), Gaps = 15/566 (2%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
            +   G++ N     SV+   A +Q     G  +H  ++K G  +   + NSL++MYAK 
Sbjct: 147 RMRAEGVWPNPFTFSSVLSMVA-SQGMVDLGQHVHAQSIKFGCCSTVFVCNSLMNMYAKC 205

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
              E A  +F  M  RD +SWN+++     NG  + +L++F +      +L     + +I
Sbjct: 206 GLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLTESTYSTVI 265

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV-IRN 195
           +LC+ +  L L RQ+H+ V+  G F     V TAL+D Y+K      AL VF  M   +N
Sbjct: 266 NLCANLKHLGLARQLHSSVLKHG-FHSYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQN 324

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
            VSWTAMI GCI + +      LF  M+ +GV P  +T + +L     + +      IH 
Sbjct: 325 VVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTIL----TVSEASFPPQIHA 380

Query: 256 YAYCCGFDFDHHLSAALMHMY---CECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSG 312
                 ++    +  ALM  Y   C   EAL     IF+    KDVV WS+++  Y+Q+G
Sbjct: 381 QVIKTNYECTPTVGTALMVSYSKLCSTEEALS----IFKMIDQKDVVSWSAMLTCYAQAG 436

Query: 313 DLSEAMKLFSRMRLERIEPNSVTLLAILSSC-TRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
           D + A   F +M +  ++PN  T+ + + +C +  + +  G   H   +K   +  + + 
Sbjct: 437 DCNGATNAFIKMTMHGLKPNEFTISSAIDACASPAAGVDLGRQFHAISIKHRCHDALCVS 496

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
           +AL++MY++ GSI ++  +F     RD +SW +++SGY  HGY ++AL +F +M+  G++
Sbjct: 497 SALVSMYARKGSIENAQCVFERQTDRDLLSWNSMLSGYAQHGYSQKALDVFRQMEVEGID 556

Query: 432 PDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACK 491
            D +T L+++  C HAGLV+E +  F+ ++++  I   ++HYAC VDL  ++GK+++   
Sbjct: 557 MDGLTFLSVIMGCAHAGLVEEGQQYFDLMVRDYGITPTMDHYACMVDLYSRAGKLDETMS 616

Query: 492 VVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGN 551
           ++  MP      I  +L+ ACR+H  +E+ ++ A +L+  EP ++A Y LLS + S +G 
Sbjct: 617 LIEGMPFPAGPTIWRALLGACRVHKNVELGKLAAEKLLSLEPLDSATYVLLSNIYSAAGK 676

Query: 552 WLGAEEVWRVMRAKGLSKSYGFSRIE 577
           W   +EV ++M  K + K  G S I+
Sbjct: 677 WKEKDEVRKLMDTKKVRKEAGCSWIQ 702



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 140/551 (25%), Positives = 251/551 (45%), Gaps = 17/551 (3%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD-ADPV 64
           F  Q L  +       G       L  +IK C  +   +  G QLH   ++ G D  D  
Sbjct: 34  FVHQALDHFLDAHRRQGRCVGGGALLGIIKICG-SVPDRVLGKQLHALCVRCGHDHGDIR 92

Query: 65  ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG 124
           +  SL+ MY  +       ++F+ M  R+ ++W S++  + Q G  +  + +F  M   G
Sbjct: 93  VGTSLVDMYMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEG 152

Query: 125 FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
                   + ++S+ +  G ++LG+ +HA  I  G    +VFV  +L+++Y+KC     A
Sbjct: 153 VWPNPFTFSSVLSMVASQGMVDLGQHVHAQSIKFGCCS-TVFVCNSLMNMYAKCGLVEEA 211

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
             VF +M  R+ VSW  +++G + +      + LF   +      T  T + V+  CA L
Sbjct: 212 RVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLTESTYSTVINLCANL 271

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
           + L   + +H      GF    ++  ALM  Y +  +      +    +  ++VV W+++
Sbjct: 272 KHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAM 331

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
           I G  Q+GD+  A  LFSRMR + + PN +T   IL + +  SF      +H  ++K   
Sbjct: 332 IDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTIL-TVSEASFPPQ---IHAQVIKTNY 387

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
               ++G ALM  YSK  S   +  IF  +  +D VSW+ +++ Y   G    A   F++
Sbjct: 388 ECTPTVGTALMVSYSKLCSTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDCNGATNAFIK 447

Query: 425 MQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSG 484
           M   G++P+  T+ + + AC       +    F+ +  + +   A+   +  V +  + G
Sbjct: 448 MTMHGLKPNEFTISSAIDACASPAAGVDLGRQFHAISIKHRCHDALCVSSALVSMYARKG 507

Query: 485 KIEDACKVVSTMPMKPSTRIL---SSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTL 541
            IE+A  V      + + R L   +S++S    HG  + A  +  Q+ E E  +    T 
Sbjct: 508 SIENAQCVFE----RQTDRDLLSWNSMLSGYAQHGYSQKALDVFRQM-EVEGIDMDGLTF 562

Query: 542 LSMV--CSESG 550
           LS++  C+ +G
Sbjct: 563 LSVIMGCAHAG 573



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 175/343 (51%), Gaps = 9/343 (2%)

Query: 105 TQNGFYVRSLEMFREMYL-CGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFEL 163
           T  GF  ++L+ F + +   G  +    L GII +C  + +  LG+Q+HAL +  G    
Sbjct: 30  TWQGFVHQALDHFLDAHRRQGRCVGGGALLGIIKICGSVPDRVLGKQLHALCVRCGHDHG 89

Query: 164 SVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQ 223
            + V T+L+D+Y   H  L   +VFE M+ RN V+WT++++G I +      + LF  M+
Sbjct: 90  DIRVGTSLVDMYMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMR 149

Query: 224 REGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY---CCGFDFDHHLSAALMHMYCECT 280
            EGV P   T + VL   A    +  G+ +H  +    CC   F   +  +LM+MY +C 
Sbjct: 150 AEGVWPNPFTFSSVLSMVASQGMVDLGQHVHAQSIKFGCCSTVF---VCNSLMNMYAKCG 206

Query: 281 EALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAIL 340
             +  AR++F R + +D+V W++++ G   +G   EA++LF   R         T   ++
Sbjct: 207 -LVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLTESTYSTVI 265

Query: 341 SSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA-ARDF 399
           + C     L     +H  ++K G +   ++  ALM+ Y+K G +  +  +F  M+ +++ 
Sbjct: 266 NLCANLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNV 325

Query: 400 VSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILS 442
           VSWT +I G   +G    A  LF  M+E GV P+ +T   IL+
Sbjct: 326 VSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTILT 368


>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 599

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 171/549 (31%), Positives = 310/549 (56%), Gaps = 10/549 (1%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPY 91
           ++I+ C   Q  +    Q+H  ++ S       I   +I+ +   +  + A Q+F++   
Sbjct: 11  ALIETCTNIQQLK----QIHAKSIISSLSYTQFIITKIINSFLSHACLDYATQVFNQTQE 66

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELL-AGIISLCSQIGELELGRQ 150
            D   +N++I  ++ +     ++ ++ +M  C  +L  +     +   C+    +E G++
Sbjct: 67  PDGFIYNAMIRAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQFAVEKGKE 126

Query: 151 IHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQ 210
           +H  VIV   +EL  F+ ++LL+ Y  C     A +VF++   ++ V W A+I+G     
Sbjct: 127 VHG-VIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYARQG 185

Query: 211 NYDTGIDLFRAM-QREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC-CGFDFDHHL 268
                  +F+ M + + V+P   T+  +++AC E ++L+ G+AIHGY            L
Sbjct: 186 MVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVKL 245

Query: 269 SAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER 328
            AAL+++Y +C   L  AR +F+    K+ V+W+S+I GY Q G L+E ++L   M L  
Sbjct: 246 EAALINLYVKCG-YLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSN 304

Query: 329 IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSH 388
           ++P+  T+  +LS+C +    + G  VH +  K G+ +DV IG AL++MY+KCG I ++ 
Sbjct: 305 LKPDRFTVSGVLSACAQMGAFNLGNWVHRFAEKKGI-WDVFIGTALIDMYAKCGFIGAAR 363

Query: 389 QIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG 448
           ++F++M  R+  +W  ++SGY  HG  E A++LF EM+ESG  PD+IT LA+L AC H+G
Sbjct: 364 KVFDQMNERNVATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLHACAHSG 423

Query: 449 LVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSL 508
           LV+  +  F+ +++  KI   +EHY C VDLLG++G +++A +++  M ++P+  +  +L
Sbjct: 424 LVENGKQYFDLMLQYYKIPPRVEHYGCMVDLLGRAGLLQEARELIKMMVVEPNVVVWGAL 483

Query: 509 VSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLS 568
           +SAC IHG +E+ E  AH +I+    +  +Y +L+ + + +  +   + V  +M  KG+ 
Sbjct: 484 LSACSIHGNIEIGEWAAHHMIKLNAMDGGSYVILANLYASAQRFNRVKAVREMMVEKGIC 543

Query: 569 KSYGFSRIE 577
           KS+G S IE
Sbjct: 544 KSHGCSMIE 552



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 109/386 (28%), Positives = 196/386 (50%), Gaps = 6/386 (1%)

Query: 31  PSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMP 90
           P V KACA +Q     G ++H   ++ G + D  + +SL++ Y    +  +A Q+FDE  
Sbjct: 109 PFVFKACA-SQFAVEKGKEVHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFD 167

Query: 91  YRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE-LLAGIISLCSQIGELELGR 149
            +D + WN++I  + + G  + S  +F+EM     V   E  + G+I  C +   L+LGR
Sbjct: 168 AKDVVFWNALITGYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGR 227

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
            IH  ++ D      V +  AL++LY KC +   A ++F+++  +N V W ++I G    
Sbjct: 228 AIHGYMMKDMVLREGVKLEAALINLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQI 287

Query: 210 QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS 269
            + +  I+L R M    +KP R T++ VL ACA++     G  +H +A   G  +D  + 
Sbjct: 288 GSLNEVIELLREMHLSNLKPDRFTVSGVLSACAQMGAFNLGNWVHRFAEKKGI-WDVFIG 346

Query: 270 AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
            AL+ MY +C   +  AR +F++   ++V  W++I+ GY+  G    A++LFS MR    
Sbjct: 347 TALIDMYAKCG-FIGAARKVFDQMNERNVATWNAILSGYASHGQAESAIELFSEMRESGA 405

Query: 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK-AGLNFDVSIGNALMNMYSKCGSITSSH 388
            P+S+T LA+L +C     + +G      +++   +   V     ++++  + G +  + 
Sbjct: 406 RPDSITFLAVLHACAHSGLVENGKQYFDLMLQYYKIPPRVEHYGCMVDLLGRAGLLQEAR 465

Query: 389 QIFNEMAAR-DFVSWTTLISGYGFHG 413
           ++   M    + V W  L+S    HG
Sbjct: 466 ELIKMMVVEPNVVVWGALLSACSIHG 491


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 167/503 (33%), Positives = 273/503 (54%), Gaps = 25/503 (4%)

Query: 97  WNSIINCFTQNGFYVRSLEMFREMYLCGFV---LKAELLAGIISLCSQIGELELGRQIHA 153
           W   I      G +  ++ +F  M         + A L A + S C+ +G   LG  +HA
Sbjct: 16  WAQQIRAAAAEGHFCDAVSLFLRMRASAAPRSSVPASLPAALKS-CAALGLSALGASLHA 74

Query: 154 LVIVDGSFELSVFVSTALLDLYSK--CHH-----------------WLIALRVFEQMVIR 194
           L I  G+F    F + ALL+LY K  C +                 +    +VF++M+ R
Sbjct: 75  LAIRSGAFA-DRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIER 133

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
           + VSW  ++ GC +   +   +   R M REG +P   TL+ VL   AE  D++ G  +H
Sbjct: 134 DVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVH 193

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
           G+A+  GFD D  + ++L+ MY  CT   +  ++ F+   V+D ++W+S++ G +Q+G +
Sbjct: 194 GFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKV-FDNLPVRDHILWNSLLAGCAQNGSV 252

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
            EA+ +F RM    + P  VT  +++  C   + L  G  +H Y++  G   +V I ++L
Sbjct: 253 EEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSSL 312

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           ++MY KCG I+ +H IF++M++ D VSWT +I GY  HG   EAL LF  M+    +P+ 
Sbjct: 313 IDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNH 372

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS 494
           IT LA+L+AC+HAGLV +    F ++     I   +EH+A   D LG++G++++A   +S
Sbjct: 373 ITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGELDEAYNFIS 432

Query: 495 TMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLG 554
            M +KP+  + S+L+ ACR+H    +AE +A +++E EP +  ++ +LS + S SG W  
Sbjct: 433 KMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNMYSASGRWNE 492

Query: 555 AEEVWRVMRAKGLSKSYGFSRIE 577
           A  +   MR KG+ K    S IE
Sbjct: 493 AAHLRESMRKKGMKKDPACSWIE 515



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 129/467 (27%), Positives = 236/467 (50%), Gaps = 42/467 (8%)

Query: 5   HFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPV 64
           HF +      +     +   S  A LP+ +K+CA A      G  LH  A++SG+ AD  
Sbjct: 28  HFCDAVSLFLRMRASAAPRSSVPASLPAALKSCA-ALGLSALGASLHALAIRSGAFADRF 86

Query: 65  ISNSLISMYAKF-------------------SKPESAYQLFDEMPYRDTISWNSIINCFT 105
            +N+L+++Y K                    +  ES  ++FDEM  RD +SWN+++    
Sbjct: 87  TANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDVVSWNTLVLGCA 146

Query: 106 QNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSV 165
           + G +  +L   R+M   GF   +  L+ ++ + ++  +++ G ++H     +G F+  V
Sbjct: 147 EEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGFAFRNG-FDSDV 205

Query: 166 FVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
           FV ++L+D+Y+ C     +++VF+ + +R+ + W ++++GC  + + +  + +FR M + 
Sbjct: 206 FVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQA 265

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
           GV+P  VT + ++  C  L  LR GK +H Y  C GF+ +  +S++L+ MYC+C E +  
Sbjct: 266 GVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGE-ISI 324

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           A  IF++    DVV W+++I GY+  G   EA+ LF RM L   +PN +T LA+L++C+ 
Sbjct: 325 AHCIFDKMSSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSH 384

Query: 346 QSFLSHG------LGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDF 399
              +  G      +  H  I+    +F      AL +   + G +  ++   ++M  +  
Sbjct: 385 AGLVDKGWKYFKSMSNHYGIVPTLEHF-----AALADTLGRAGELDEAYNFISKMQIKPT 439

Query: 400 VS-WTTLISGYGFHG---YGEEALQLFLEMQESGVEPDAITVLAILS 442
            S W+TL+     H      EE  +  +E+     EP +I    +LS
Sbjct: 440 ASVWSTLLRACRVHKNTMLAEEVAKKIMEL-----EPRSIGSHVVLS 481



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 135/521 (25%), Positives = 216/521 (41%), Gaps = 73/521 (14%)

Query: 24  YSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAY 83
           ++ + +LP +   CA  +     GL++H  A ++G D+D  + +SLI MYA  ++ + + 
Sbjct: 171 FTLSTVLP-IFAECADVKR----GLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSV 225

Query: 84  QLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIG 143
           ++FD +P RD I WNS++    QNG    +L +FR M   G        + +I +C  + 
Sbjct: 226 KVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLA 285

Query: 144 ELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMI 203
            L  G+Q+HA VI  G FE +VF+S++L+D+Y KC    IA  +F++M   + VSWTAMI
Sbjct: 286 SLRFGKQLHAYVIC-GGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMI 344

Query: 204 SGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFD 263
            G          + LF  M+    KP  +T   VL AC+       G    G+ Y     
Sbjct: 345 MGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHA-----GLVDKGWKYFKSMS 399

Query: 264 FDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSR 323
             + +   L H                          ++++     ++G+L EA    S+
Sbjct: 400 NHYGIVPTLEH--------------------------FAALADTLGRAGELDEAYNFISK 433

Query: 324 MRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN--ALMNMYSKC 381
           M   +I+P +     +L +C           V   IM+       SIG+   L NMYS  
Sbjct: 434 M---QIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELEPR---SIGSHVVLSNMYSAS 487

Query: 382 GSITSSHQIFNEMAARDF-----VSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI- 435
           G    +  +   M  +        SW  + S           L +F+    S    D I 
Sbjct: 488 GRWNEAAHLRESMRKKGMKKDPACSWIEVKS----------KLHVFVAHDRSHPWYDRII 537

Query: 436 -TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS 494
             + A        G V   E +F ++ +E K          YV L G S K+     ++S
Sbjct: 538 DALNAFSEQMAREGHVPNTEDVFQDIEEEHK---------SYV-LCGHSEKLAIVFGIIS 587

Query: 495 TMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPEN 535
           T P     R++ +L      H   +    LA + I     N
Sbjct: 588 T-PAGTKIRVMKNLRVCIDCHTVTKFISKLADREIVVRDAN 627


>gi|57899214|dbj|BAD87363.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|222619954|gb|EEE56086.1| hypothetical protein OsJ_04925 [Oryza sativa Japonica Group]
          Length = 566

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 175/534 (32%), Positives = 297/534 (55%), Gaps = 6/534 (1%)

Query: 49  QLHCTALKSG-SDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQN 107
           Q H  A K G S ++P  + +L++ Y +  +   A  LFD+MP R  ++WN++I    Q+
Sbjct: 32  QCHAAATKLGFSASNPFANTALLAFYCRSRRLREAQHLFDQMPLRTAVTWNTLIYGHAQS 91

Query: 108 GFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFV 167
                ++  F  M   G    A  ++ ++  C ++     G  +H++ +  G F  SV V
Sbjct: 92  TAPDLAVAAFARMVRAGVSPTASSVSSVLVACVRLENAGAGAMLHSVGLRCGFFA-SVVV 150

Query: 168 STALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV 227
            TAL+D+Y+KC     A +VF +M  +N  ++TA+++G + S+     + L R M+R GV
Sbjct: 151 GTALVDMYAKCRRLGAAQQVFGEMEEKNVATFTALVTGFVLSRRPHDAVLLVREMERSGV 210

Query: 228 KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPAR 287
            P  +T + +L + A   D+ +GK +H      G + D  + +AL+ MY +C       +
Sbjct: 211 APNLMTYSSLLSSFASPEDIDHGKQVHCAVLKKGLEHDPFVLSALVTMYSKCGIWEDFVK 270

Query: 288 IIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQS 347
           +       +D V ++S+I G S  G   EA + F  MR    + +  T  +IL +    S
Sbjct: 271 VQMS-VSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASILKAIGSSS 329

Query: 348 FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLIS 407
            L  G  VH  I+K G +  V + N+L++MY++ G+I  S+ +F  M A + VSW +L+S
Sbjct: 330 SLLEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMS 389

Query: 408 GYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK-- 465
           G   HG+G+E +++F +M+   V+PD IT L++L+AC+H GLV +    F N+MK+K   
Sbjct: 390 GCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSHVGLVDKGLEYF-NLMKDKGYL 448

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
           +    +HYAC VDLLG++G + +A  +++ MP+KP   +  +L+SAC+IHG LE+A  ++
Sbjct: 449 VGARTKHYACMVDLLGRAGYLNEAEYLINGMPIKPGASVYRALLSACQIHGNLEIAIRVS 508

Query: 526 HQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIENE 579
            +L+E  P +++ +  LS   +  G W  A E+   M  KG+ K   +SRIE++
Sbjct: 509 KRLMELNPHDSSVHVQLSNAFAGDGRWGNAAEIRETMSGKGIVKEPSWSRIEDQ 562



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 95/410 (23%), Positives = 191/410 (46%), Gaps = 6/410 (1%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           +G+    + + SV+ AC   + +   G  LH   L+ G  A  V+  +L+ MYAK  +  
Sbjct: 107 AGVSPTASSVSSVLVACVRLE-NAGAGAMLHSVGLRCGFFASVVVGTALVDMYAKCRRLG 165

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
           +A Q+F EM  ++  ++ +++  F  +     ++ + REM   G        + ++S  +
Sbjct: 166 AAQQVFGEMEEKNVATFTALVTGFVLSRRPHDAVLLVREMERSGVAPNLMTYSSLLSSFA 225

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
              +++ G+Q+H  V+  G  E   FV +AL+ +YSKC  W   ++V   +  +++VS+ 
Sbjct: 226 SPEDIDHGKQVHCAVLKKG-LEHDPFVLSALVTMYSKCGIWEDFVKVQMSVSCQDQVSFN 284

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
           ++ISG             F  M+R G      T   +L A      L  G+ +H      
Sbjct: 285 SVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASILKAIGSSSSLLEGRQVHTLILKI 344

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
           G+D    +  +L+ MY     A+  +  +F   +  ++V W+S++ G +Q G   E +++
Sbjct: 345 GYDSVVDVQNSLISMYAR-HGAIGESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEM 403

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN--ALMNMY 378
           F +MR   ++P+ +T L++L++C+    +  GL     +   G        +   ++++ 
Sbjct: 404 FEQMRRLHVQPDHITFLSVLTACSHVGLVDKGLEYFNLMKDKGYLVGARTKHYACMVDLL 463

Query: 379 SKCGSITSSHQIFNEMAARDFVS-WTTLISGYGFHGYGEEALQLFLEMQE 427
            + G +  +  + N M  +   S +  L+S    HG  E A+++   + E
Sbjct: 464 GRAGYLNEAEYLINGMPIKPGASVYRALLSACQIHGNLEIAIRVSKRLME 513



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 99/399 (24%), Positives = 178/399 (44%), Gaps = 45/399 (11%)

Query: 13  LYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISM 72
           L  +E+  SG+  N     S++ + A  +   H G Q+HC  LK G + DP + ++L++M
Sbjct: 200 LLVREMERSGVAPNLMTYSSLLSSFASPEDIDH-GKQVHCAVLKKGLEHDPFVLSALVTM 258

Query: 73  YAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELL 132
           Y+K    E   ++   +  +D +S+NS+I+  +  G    + + F EM   G  +     
Sbjct: 259 YSKCGIWEDFVKVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTF 318

Query: 133 AGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR--VFEQ 190
           A I+        L  GRQ+H L++  G ++  V V  +L+ +Y++  H  I     VF  
Sbjct: 319 ASILKAIGSSSSLLEGRQVHTLILKIG-YDSVVDVQNSLISMYAR--HGAIGESNGVFIS 375

Query: 191 MVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNG 250
           M   N VSW +++SGC    +    +++F  M+R  V+P  +T   VL AC+ +  +  G
Sbjct: 376 MEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSHVGLVDKG 435

Query: 251 KAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQ 310
                     G+                         ++  RTK      ++ ++    +
Sbjct: 436 LEYFNLMKDKGY-------------------------LVGARTK-----HYACMVDLLGR 465

Query: 311 SGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN-FDVS 369
           +G L+EA  L + M    I+P +    A+LS+C     L   + V   +M+  LN  D S
Sbjct: 466 AGYLNEAEYLINGM---PIKPGASVYRALLSACQIHGNLEIAIRVSKRLME--LNPHDSS 520

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFV---SWTTL 405
           +   L N ++  G   ++ +I   M+ +  V   SW+ +
Sbjct: 521 VHVQLSNAFAGDGRWGNAAEIRETMSGKGIVKEPSWSRI 559


>gi|224122888|ref|XP_002318941.1| predicted protein [Populus trichocarpa]
 gi|222857317|gb|EEE94864.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 175/558 (31%), Positives = 295/558 (52%), Gaps = 14/558 (2%)

Query: 25  SNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQ 84
           +N    P ++K   Y Q  Q+   Q   T   +   +  +++  L+  Y +      A  
Sbjct: 10  NNFHPFPPMMKN--YLQWAQNTPTQKSGTPFNAKGTS--ILATDLLKSYFERGLTSQARN 65

Query: 85  LFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF-VLKAELLAGIISLCSQIG 143
           LFDEMP RD ++W ++I+ +T    Y ++  +F +M   G     A  ++ ++  C  + 
Sbjct: 66  LFDEMPERDVVAWTTMISGYTHCNEYTQAWSVFVDMVKNGNDPPNAFTISSVLKACKGMK 125

Query: 144 ELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR----VFEQMVIRNEVSW 199
            +  GR +H L I     E  ++V  AL+D+Y+ C    + +R    VF  +  +N VSW
Sbjct: 126 RVFCGRLVHGLAIKRRFMEGFIYVDNALMDMYASCG---VGMRDACVVFHDIKEKNVVSW 182

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
           T +I+G     N +  + +FR M  +GV     +++I + ACA +     G+ IH     
Sbjct: 183 TTLIAGYTHRGNGNRALQIFREMLLDGVALNPHSISIAVRACASIGSQNFGRQIHTAVIK 242

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
            GF+ D  ++ +++ MYC C   L  A   F     KD++ W+++I GY +S D  E   
Sbjct: 243 HGFESDLPVTNSILDMYCRCG-CLSEANKYFNDMTEKDLITWNTLIAGYERS-DSIEPFF 300

Query: 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           +FS+M  E   PN  T  +++++C   + L  G  VH  I + GL+ ++ + NAL++MY+
Sbjct: 301 IFSQMESEGFSPNCFTFTSLVAACANAAALQCGQQVHGGIFRRGLDGNLELANALIDMYA 360

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           KCG+I  S + F+EM+  + VSWT+++ GYG HGYG+EA++LF EM  SG+ PD +  +A
Sbjct: 361 KCGNIIDSQKNFSEMSCTNLVSWTSMMIGYGTHGYGKEAVELFDEMVRSGIRPDQVVFMA 420

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           +L AC+HAGLV +     N ++ +  I    E Y C VDLLG+ G++EDA +++ +MP  
Sbjct: 421 VLHACSHAGLVDQGLRYINCMINDYHIKPNQEIYGCVVDLLGRPGRVEDAYQLIRSMPFM 480

Query: 500 PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVW 559
               +  +L+ AC+ H    + ++ A + +   P     Y +LS + +  G W  A  + 
Sbjct: 481 ADESVWGALLGACKAHNFSRLGKLAAKKALALRPNMVETYVMLSNIYAAEGKWGEAARMR 540

Query: 560 RVMRAKGLSKSYGFSRIE 577
           ++M+  G  K  G S IE
Sbjct: 541 KLMKRAGCRKVAGRSWIE 558



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 126/238 (52%), Gaps = 10/238 (4%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
            + L +++ E+   G+  N   +   ++ACA   + Q+FG Q+H   +K G ++D  ++N
Sbjct: 196 NRALQIFR-EMLLDGVALNPHSISIAVRACASIGS-QNFGRQIHTAVIKHGFESDLPVTN 253

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           S++ MY +      A + F++M  +D I+WN++I  + ++   +    +F +M   GF  
Sbjct: 254 SILDMYCRCGCLSEANKYFNDMTEKDLITWNTLIAGYERSD-SIEPFFIFSQMESEGFSP 312

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVI---VDGSFELSVFVSTALLDLYSKCHHWLIA 184
                  +++ C+    L+ G+Q+H  +    +DG+ EL    + AL+D+Y+KC + + +
Sbjct: 313 NCFTFTSLVAACANAAALQCGQQVHGGIFRRGLDGNLEL----ANALIDMYAKCGNIIDS 368

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
            + F +M   N VSWT+M+ G          ++LF  M R G++P +V    VL AC+
Sbjct: 369 QKNFSEMSCTNLVSWTSMMIGYGTHGYGKEAVELFDEMVRSGIRPDQVVFMAVLHACS 426


>gi|218189824|gb|EEC72251.1| hypothetical protein OsI_05387 [Oryza sativa Indica Group]
          Length = 566

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 175/534 (32%), Positives = 297/534 (55%), Gaps = 6/534 (1%)

Query: 49  QLHCTALKSG-SDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQN 107
           Q H  A K G S ++P  + +L++ Y +  +   A  LFD+MP R  ++WN++I    Q+
Sbjct: 32  QCHAAATKLGFSASNPFANTALLAFYCRSRRLREAQHLFDQMPLRTAVTWNTLIYGHAQS 91

Query: 108 GFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFV 167
                ++  F  M   G    A  ++ ++  C ++     G  +H++ +  G F  SV V
Sbjct: 92  TAPDLAVAAFARMVRAGVSPTASSVSSVLVACVRLENAGAGAMLHSVGLRCGFFA-SVVV 150

Query: 168 STALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV 227
            TAL+D+Y+KC     A +VF +M  +N  ++TA+++G + S+     + L R M+R GV
Sbjct: 151 GTALVDMYAKCRRLGAAQQVFGEMEEKNVATFTALVTGFVLSRRPHDAVLLVREMERSGV 210

Query: 228 KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPAR 287
            P  +T + +L + A   D+ +GK +H      G + D  + +AL+ MY +C       +
Sbjct: 211 APNLMTYSSLLSSFASPEDIDHGKQVHCAVLKKGLEHDPFVLSALVTMYSKCGIWEDFVK 270

Query: 288 IIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQS 347
           +       +D V ++S+I G S  G   EA + F  MR    + +  T  +IL +    S
Sbjct: 271 VQMS-VSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASILKAIGSSS 329

Query: 348 FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLIS 407
            L  G  VH  I+K G +  V + N+L++MY++ G+I  S+ +F  M A + VSW +L+S
Sbjct: 330 SLLEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMS 389

Query: 408 GYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK-- 465
           G   HG+G+E +++F +M+   V+PD IT L++L+AC+H GLV +    F N+MK+K   
Sbjct: 390 GCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSHVGLVDKGLEYF-NLMKDKGYL 448

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
           +    +HYAC VDLLG++G + +A  +++ MP+KP   +  +L+SAC+IHG LE+A  ++
Sbjct: 449 VGARTKHYACMVDLLGRAGYLNEAEYLINGMPIKPGASVYRALLSACQIHGNLEIAIRVS 508

Query: 526 HQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIENE 579
            +L+E  P +++ +  LS   +  G W  A E+   M  KG+ K   +SRIE++
Sbjct: 509 KRLMELNPHDSSVHVQLSNAFAGDGRWGNAAEIRETMSGKGIVKEPSWSRIEDQ 562



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 95/410 (23%), Positives = 191/410 (46%), Gaps = 6/410 (1%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           +G+    + + SV+ AC   + +   G  LH   L+ G  A  V+  +L+ MYAK  +  
Sbjct: 107 AGVSPTASSVSSVLVACVRLE-NAGAGAMLHSVGLRCGFFASVVVGTALVDMYAKCRRLG 165

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
           +A Q+F EM  ++  ++ +++  F  +     ++ + REM   G        + ++S  +
Sbjct: 166 AAQQVFGEMEEKNVATFTALVTGFVLSRRPHDAVLLVREMERSGVAPNLMTYSSLLSSFA 225

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
              +++ G+Q+H  V+  G  E   FV +AL+ +YSKC  W   ++V   +  +++VS+ 
Sbjct: 226 SPEDIDHGKQVHCAVLKKG-LEHDPFVLSALVTMYSKCGIWEDFVKVQMSVSCQDQVSFN 284

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
           ++ISG             F  M+R G      T   +L A      L  G+ +H      
Sbjct: 285 SVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASILKAIGSSSSLLEGRQVHTLILKI 344

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
           G+D    +  +L+ MY     A+  +  +F   +  ++V W+S++ G +Q G   E +++
Sbjct: 345 GYDSVVDVQNSLISMYAR-HGAIGESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEM 403

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN--ALMNMY 378
           F +MR   ++P+ +T L++L++C+    +  GL     +   G        +   ++++ 
Sbjct: 404 FEQMRRLHVQPDHITFLSVLTACSHVGLVDKGLEYFNLMKDKGYLVGARTKHYACMVDLL 463

Query: 379 SKCGSITSSHQIFNEMAARDFVS-WTTLISGYGFHGYGEEALQLFLEMQE 427
            + G +  +  + N M  +   S +  L+S    HG  E A+++   + E
Sbjct: 464 GRAGYLNEAEYLINGMPIKPGASVYRALLSACQIHGNLEIAIRVSKRLME 513



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 99/399 (24%), Positives = 178/399 (44%), Gaps = 45/399 (11%)

Query: 13  LYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISM 72
           L  +E+  SG+  N     S++ + A  +   H G Q+HC  LK G + DP + ++L++M
Sbjct: 200 LLVREMERSGVAPNLMTYSSLLSSFASPEDIDH-GKQVHCAVLKKGLEHDPFVLSALVTM 258

Query: 73  YAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELL 132
           Y+K    E   ++   +  +D +S+NS+I+  +  G    + + F EM   G  +     
Sbjct: 259 YSKCGIWEDFVKVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTF 318

Query: 133 AGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR--VFEQ 190
           A I+        L  GRQ+H L++  G ++  V V  +L+ +Y++  H  I     VF  
Sbjct: 319 ASILKAIGSSSSLLEGRQVHTLILKIG-YDSVVDVQNSLISMYAR--HGAIGESNGVFIS 375

Query: 191 MVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNG 250
           M   N VSW +++SGC    +    +++F  M+R  V+P  +T   VL AC+ +  +  G
Sbjct: 376 MEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSHVGLVDKG 435

Query: 251 KAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQ 310
                     G+                         ++  RTK      ++ ++    +
Sbjct: 436 LEYFNLMKDKGY-------------------------LVGARTK-----HYACMVDLLGR 465

Query: 311 SGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN-FDVS 369
           +G L+EA  L + M    I+P +    A+LS+C     L   + V   +M+  LN  D S
Sbjct: 466 AGYLNEAEYLINGM---PIKPGASVYRALLSACQIHGNLEIAIRVSKRLME--LNPHDSS 520

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFV---SWTTL 405
           +   L N ++  G   ++ +I   M+ +  V   SW+ +
Sbjct: 521 VHVQLSNAFAGDGRWGNAAEIRETMSGKGIVKEPSWSRI 559


>gi|357130605|ref|XP_003566938.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 670

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 173/560 (30%), Positives = 295/560 (52%), Gaps = 12/560 (2%)

Query: 27  TAILPSVIKACAYAQTHQHF--------GLQLHCTALKSGSDADPVISNSLISMYAKFSK 78
           + + P      A AQ+   F        G  +H    + G  +D  + + LI+ Y     
Sbjct: 113 SGVSPDNYTMAAVAQSSAAFASWKGRATGDAVHALVQRIGFASDLFVMSGLINFYGASKS 172

Query: 79  PESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISL 138
            E A ++F+EM  RD +SW  +I+ F Q G +   L    EM   G       +  ++S 
Sbjct: 173 VEDARKVFEEMHERDVVSWTLMISAFAQCGQWDNVLRSLDEMQSEGTKPNKITIISLLSA 232

Query: 139 CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
           C Q+  ++ G  ++A V   G  E  V +  AL+ +Y KC     A + F+ M IRN  S
Sbjct: 233 CGQVRAVDKGLWVYARVDEYG-IEADVDIRNALIGMYVKCGCMSDAWKTFKGMPIRNTKS 291

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258
           W  +I G + +  +   + +F  M  +GV P  +TL  VL   A+L DL+ G+ +H Y  
Sbjct: 292 WNTLIDGFVQNGKHKEALTMFEEMLSDGVIPDVITLVSVLSTYAQLGDLQQGRYLHNYIK 351

Query: 259 CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAM 318
                 D  L  +L++MY +C + +  A IIFE    +D+V W++++ GY +      A 
Sbjct: 352 DHEIHCDIILQNSLINMYAKCGD-MAAAEIIFENMARRDIVSWTAMVCGYVKGLQFRTAF 410

Query: 319 KLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMY 378
            LF  M++  +  + + L+++LS+C++   L  G  +H YI +  +  D+ + +AL++MY
Sbjct: 411 NLFDDMKVRDVMASEMALVSLLSACSQLGALDKGREIHSYIKEKSVRTDMWLESALVDMY 470

Query: 379 SKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE-SGVEPDAITV 437
           +KCG I ++ +IF+ M  +  ++W  +I G    G G+EA+ LF ++ +    +PDAIT+
Sbjct: 471 AKCGCIDAAAEIFSRMRHKQTLAWNAMIGGLASQGQGKEAVALFEQLLKLRDPKPDAITL 530

Query: 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
             +L AC H G+V E    F N+M    I    EHY C VDLLG++G +++A   +  MP
Sbjct: 531 KVVLCACTHVGMVDEGLHYF-NLMLTLGIVPDNEHYGCIVDLLGRAGLLDEAYNFIQKMP 589

Query: 498 MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEE 557
           ++P+  I  SL++ACR+H R+E+ +++   +I+  P +   + L+S + +E G W   E+
Sbjct: 590 IQPNPVIWGSLLAACRVHHRMELGKIIGQHIIDLAPNDVGAHVLISNLHAEEGQWDDVEQ 649

Query: 558 VWRVMRAKGLSKSYGFSRIE 577
           V  +M ++ + KS G S I+
Sbjct: 650 VRGMMGSRRVEKSPGHSSIQ 669



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 139/505 (27%), Positives = 251/505 (49%), Gaps = 10/505 (1%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYA-KFSKPESAY--QLFDEMPYRDTISWNSIINCFT 105
           +LH   +++   +DP ++  L+++ A   S+ +  Y  ++FD M     I WN +I  + 
Sbjct: 36  ELHGRLVRAHLGSDPCVAGRLVTLLASPVSRHDMPYARKVFDRMAQPTAIVWNCMIRGYN 95

Query: 106 QNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELE---LGRQIHALVIVDGSFE 162
                + +LE+FR M   G       +A +    +     +    G  +HALV   G F 
Sbjct: 96  SCHAPMDALELFRAMRRSGVSPDNYTMAAVAQSSAAFASWKGRATGDAVHALVQRIG-FA 154

Query: 163 LSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM 222
             +FV + L++ Y        A +VFE+M  R+ VSWT MIS       +D  +     M
Sbjct: 155 SDLFVMSGLINFYGASKSVEDARKVFEEMHERDVVSWTLMISAFAQCGQWDNVLRSLDEM 214

Query: 223 QREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEA 282
           Q EG KP ++T+  +L AC ++R +  G  ++      G + D  +  AL+ MY +C   
Sbjct: 215 QSEGTKPNKITIISLLSACGQVRAVDKGLWVYARVDEYGIEADVDIRNALIGMYVKCG-C 273

Query: 283 LHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSS 342
           +  A   F+   +++   W+++I G+ Q+G   EA+ +F  M  + + P+ +TL+++LS+
Sbjct: 274 MSDAWKTFKGMPIRNTKSWNTLIDGFVQNGKHKEALTMFEEMLSDGVIPDVITLVSVLST 333

Query: 343 CTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSW 402
             +   L  G  +H YI    ++ D+ + N+L+NMY+KCG + ++  IF  MA RD VSW
Sbjct: 334 YAQLGDLQQGRYLHNYIKDHEIHCDIILQNSLINMYAKCGDMAAAEIIFENMARRDIVSW 393

Query: 403 TTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462
           T ++ GY        A  LF +M+   V    + ++++LSAC+  G + +   + ++ +K
Sbjct: 394 TAMVCGYVKGLQFRTAFNLFDDMKVRDVMASEMALVSLLSACSQLGALDKGREI-HSYIK 452

Query: 463 EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAE 522
           EK +   +   +  VD+  K G I+ A ++ S M  K  T   ++++      G+ + A 
Sbjct: 453 EKSVRTDMWLESALVDMYAKCGCIDAAAEIFSRMRHK-QTLAWNAMIGGLASQGQGKEAV 511

Query: 523 MLAHQLIEAEPENAANYTLLSMVCS 547
            L  QL++         TL  ++C+
Sbjct: 512 ALFEQLLKLRDPKPDAITLKVVLCA 536


>gi|357490167|ref|XP_003615371.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355516706|gb|AES98329.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 765

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 175/566 (30%), Positives = 308/566 (54%), Gaps = 28/566 (4%)

Query: 29  ILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDE 88
           +L   ++ C+++ T       +HC  +K+GS  DP +S+ L+++YAK  + E A Q+FD 
Sbjct: 79  LLQQCLENCSFSSTQI-----IHCHIVKTGSHEDPFLSSFLVTVYAKCGRMECAQQVFDH 133

Query: 89  MPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE-LLAGIISLCSQIGELEL 147
           M  R+ ++W +++  + QN     ++ +F EM L      +   LA  ++ C+ +  L+L
Sbjct: 134 MNRRNAVAWTNLMKGYVQNSMPKHAIHLFEEMLLHSECYPSNYTLAIALNACTSLHSLKL 193

Query: 148 GRQIHALVI---VDGSFELSVFVSTALLDLYSKCHHWL-IALRVFEQMVIRNEVSWTAMI 203
           G Q+HA +I   VD  F+ S+    AL  LY+KC   L + L  F ++  ++ +SWTA I
Sbjct: 194 GEQLHAYIIKYHVD--FDTSI--GNALCSLYTKCGGKLEVGLTAFRRIKEKDVISWTAAI 249

Query: 204 SGCIDSQNYDTGIDLFRAM--QREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           S C +      G+ +F  M      V+P   TLT  L  C E++ L  G  +H      G
Sbjct: 250 SACGEKGEAMKGVRVFVEMLLDEVQVQPNEYTLTSALSQCCEVKCLELGIQVHALCTKLG 309

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS------ 315
           ++ +  +  +L+++Y +C   +   R+ F+     ++V W+++I G++Q  +LS      
Sbjct: 310 YESNLRVRNSLLYLYLKCGCIVEAQRL-FKGMNDVNLVTWNAMIAGHAQMMELSKDNLSA 368

Query: 316 -----EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSI 370
                EA+ LFS++    ++P+  T  ++LS C++   L  G  +H   +K G   DV +
Sbjct: 369 YQKGIEALNLFSKLNRSGMKPDPFTFSSVLSVCSKMMALEQGEQIHARTIKTGFLSDVVV 428

Query: 371 GNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV 430
           G++++NMY+KCGSI  + ++F EM+ R  + WTT+I+G+  HG+ ++AL LF +M+  G+
Sbjct: 429 GSSMINMYNKCGSIERASKVFLEMSIRTMILWTTMITGFAQHGWSKQALNLFEDMKLVGI 488

Query: 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDAC 490
            P+ +T + +LSAC  AG+V EA   F  + KE KI   ++HY C VD+L + G++++A 
Sbjct: 489 RPNLVTFVGVLSACGSAGMVNEAFNYFEIMQKEYKIKPVMDHYVCLVDMLVRLGQVQEAF 548

Query: 491 KVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESG 550
            ++  M  K S  I S+L+  C   G LE+    A +L+  +P++   Y LL      +G
Sbjct: 549 DLIKKMDYKASEFIWSNLIVGCLSQGNLELGCDAAEKLLSLKPKDTETYKLLLNAYVSAG 608

Query: 551 NWLGAEEVWRVMRAKGLSKSYGFSRI 576
            +     V  +MR + + +   +S I
Sbjct: 609 RYDDVSRVENIMREEKIGELKDWSWI 634



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 1/143 (0%)

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
           FS  +    E +S     +L  C      S    +HC+I+K G + D  + + L+ +Y+K
Sbjct: 61  FSLAKESNEEVDSSFYPPLLQQCLENCSFSSTQIIHCHIVKTGSHEDPFLSSFLVTVYAK 120

Query: 381 CGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM-QESGVEPDAITVLA 439
           CG +  + Q+F+ M  R+ V+WT L+ GY  +   + A+ LF EM   S   P   T+  
Sbjct: 121 CGRMECAQQVFDHMNRRNAVAWTNLMKGYVQNSMPKHAIHLFEEMLLHSECYPSNYTLAI 180

Query: 440 ILSACNHAGLVKEAETLFNNVMK 462
            L+AC     +K  E L   ++K
Sbjct: 181 ALNACTSLHSLKLGEQLHAYIIK 203


>gi|224065397|ref|XP_002301797.1| predicted protein [Populus trichocarpa]
 gi|222843523|gb|EEE81070.1| predicted protein [Populus trichocarpa]
          Length = 602

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 168/531 (31%), Positives = 299/531 (56%), Gaps = 5/531 (0%)

Query: 49  QLHCTALKSG-SDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQN 107
           Q+H   + +G   A+   +  +I+ YA+     SA  LFD++P R   +WN++I  +++ 
Sbjct: 25  QIHALIITTGLFFANSNFNGLVIASYARIGGITSARHLFDKLPQRGVDAWNAMIVAYSRR 84

Query: 108 GFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFV 167
                 L ++ +M   G    +      I   S + +LE G +I     VD  +   VFV
Sbjct: 85  YHLTEVLNLYHQMVNEGGKPDSSTFTVAIKASSSLKDLEAGERIWRRA-VDFGYGCDVFV 143

Query: 168 STALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV 227
            +++L+LY KC     A  VF++MV R+ V W  MI+G + + N    +D+FR M++EG+
Sbjct: 144 GSSVLNLYVKCGKIDEAKLVFDKMVKRDVVCWATMITGLVQNGNVLEAVDMFRRMRKEGI 203

Query: 228 KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH-LSAALMHMYCECTEALHPA 286
           +   V +  ++ ACA L +L+ G ++HG+A       D   L  +L+ MY +  + L  A
Sbjct: 204 EGDGVLMLGLVQACANLGELKLGLSVHGHAVRREMLMDDVILQTSLVDMYAKIGD-LELA 262

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
             +FE+   K+ V W ++I G++Q+G    A+ L   M+    +P++  L++ L +C++ 
Sbjct: 263 SRVFEQMPRKNAVSWGALISGFAQNGFAEYALDLLVEMQSLEFKPDTAVLVSALLACSQV 322

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
             L  G  +H YI++  L F++ +G AL++MY+KCGS++ +H IF+ + +RD + W T+I
Sbjct: 323 GHLKLGKSIHGYIVRR-LGFELVLGTALIDMYAKCGSLSCAHAIFDRVDSRDVILWNTMI 381

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
           + YG HG G+E L LFL+M+E+ + PD  T  ++LSA +H+G V   +  FN ++ E KI
Sbjct: 382 ASYGIHGDGKEVLSLFLKMKEANISPDHATFASLLSALSHSGQVDVGQYWFNAMVNECKI 441

Query: 467 ALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAH 526
             + +HYAC VDL  ++G++E+A +++ +M  +P   I  +L+S C  +  L   E+ A 
Sbjct: 442 PPSEKHYACMVDLFSRAGRVEEAYQLIESMNTEPGLAIWVALLSGCHNYRNLLFGEVAAK 501

Query: 527 QLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           ++++  P++   Y L+S   S +  W     + ++M+  G+ K  G+S +E
Sbjct: 502 KILDLNPDDLGIYALVSNFFSLARMWDRVSILRKIMKETGMKKVPGYSAVE 552


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 156/430 (36%), Positives = 250/430 (58%), Gaps = 2/430 (0%)

Query: 149 RQIHALVIVDGSFELSVFVSTALL-DLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCI 207
           RQIHA  I  G    +  +   L+  L S C     A ++F Q+   N  +W  MI G  
Sbjct: 57  RQIHAFSIRHGVPLTNPDMGKYLIFTLLSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGYA 116

Query: 208 DSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
           +S+N    ++L+R M    ++P   T   +L A A+L D+R G+ +H  A   GF+    
Sbjct: 117 ESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVF 176

Query: 268 LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
           +   L+HMY  C  A   A  +FE    +++V W+S+I GY+ +G  +EA+ LF  M L 
Sbjct: 177 VQNTLVHMYAACGHA-ESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLR 235

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
            +EP+  T++++LS+C     L+ G   H Y++K GL+ ++  GNAL+++Y+KCGSI  +
Sbjct: 236 GVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQA 295

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHA 447
           H++F+EM  +  VSWT+LI G   +G+G+EAL+LF E++  G+ P  IT + +L AC+H 
Sbjct: 296 HKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHC 355

Query: 448 GLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSS 507
           G+V E    F  + +E  I   IEHY C VDLLG++G ++ A + +  MPM+P+  +  +
Sbjct: 356 GMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRT 415

Query: 508 LVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567
           L+ AC IHG L + E+   QL++ EP+++ +Y LLS + +    W    +V R M  +G+
Sbjct: 416 LLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGV 475

Query: 568 SKSYGFSRIE 577
            K+ G S +E
Sbjct: 476 KKTPGHSLVE 485



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 100/385 (25%), Positives = 196/385 (50%), Gaps = 9/385 (2%)

Query: 49  QLHCTALKSGSD-ADPVISNSLISMYAKFSKPES-AYQLFDEMPYRDTISWNSIINCFTQ 106
           Q+H  +++ G    +P +   LI     F  P S A+Q+F ++   +  +WN++I  + +
Sbjct: 58  QIHAFSIRHGVPLTNPDMGKYLIFTLLSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGYAE 117

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           +   + +LE++R+M++            ++   +++ ++  G ++H++ I +G FE  VF
Sbjct: 118 SENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNG-FESLVF 176

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           V   L+ +Y+ C H   A ++FE M  RN V+W ++I+G   +   +  + LFR M   G
Sbjct: 177 VQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRG 236

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           V+P   T+  +L ACAEL  L  G+  H Y    G D + H   AL+ +Y +C  ++  A
Sbjct: 237 VEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCG-SIRQA 295

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
             +F+  + K VV W+S+I G + +G   EA++LF  +  + + P+ +T + +L +C+  
Sbjct: 296 HKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHC 355

Query: 347 SFLSHGLGVHCYIMKA-GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTT 404
             +  G      + +  G+   +     ++++  + G +  +H+    M  + + V W T
Sbjct: 356 GMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRT 415

Query: 405 LISGYGFHGY---GEEALQLFLEMQ 426
           L+     HG+   GE A    L+++
Sbjct: 416 LLGACTIHGHLALGEVARAQLLQLE 440



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 177/339 (52%), Gaps = 18/339 (5%)

Query: 11  LHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLI 70
           L LY+Q +H S +  +T   P ++KA A     +  G ++H  A+++G ++   + N+L+
Sbjct: 125 LELYRQ-MHVSCIEPDTHTYPFLLKAIAKLMDVRE-GEKVHSIAIRNGFESLVFVQNTLV 182

Query: 71  SMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE 130
            MYA     ESA++LF+ M  R+ ++WNS+IN +  NG    +L +FREM L G      
Sbjct: 183 HMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGF 242

Query: 131 LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQ 190
            +  ++S C+++G L LGR+ H  ++  G  + ++    ALLDLY+KC     A +VF++
Sbjct: 243 TMVSLLSACAELGALALGRRAHVYMVKVG-LDGNLHAGNALLDLYAKCGSIRQAHKVFDE 301

Query: 191 MVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNG 250
           M  ++ VSWT++I G   +      ++LF+ ++R+G+ P+ +T   VL AC+       G
Sbjct: 302 MEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHC-----G 356

Query: 251 KAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV-------KDVVIWSS 303
               G+ Y      ++ +   + H  C   + L  A ++ +  +         + V+W +
Sbjct: 357 MVDEGFDYFKRMKEEYGIVPKIEHYGC-MVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRT 415

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSS 342
           ++   +  G L  A+   +R +L ++EP       +LS+
Sbjct: 416 LLGACTIHGHL--ALGEVARAQLLQLEPKHSGDYVLLSN 452


>gi|116310930|emb|CAH67868.1| B0403H10-OSIGBa0105A11.20 [Oryza sativa Indica Group]
          Length = 804

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 177/539 (32%), Positives = 305/539 (56%), Gaps = 12/539 (2%)

Query: 48  LQLHCTALKSGSD--ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT 105
            QL+   +K G +   D  + +S I M+++F   +SA ++FD    ++T  WN++I  + 
Sbjct: 232 FQLYGLLVKYGVEYINDLFVVSSAIDMFSEFGDVQSARRVFDRAAKKNTEVWNTMITGYV 291

Query: 106 QNGFYVRSLEMFREMYLCGFV-LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELS 164
           QNG +  ++++F ++     V L        ++  SQ  ++ LG+Q+H  +I      L 
Sbjct: 292 QNGQFSEAIDLFSKILGSREVPLDVVTFLSALTAASQSQDVSLGQQLHGYLIKGMHRTLP 351

Query: 165 VFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR 224
           V +  AL+ +YS+C +   A  +F+++  ++ V+W  M++  I +     G+ L   MQ+
Sbjct: 352 VILGNALVVMYSRCGNVQTAFDLFDRLPEKDIVTWNTMVTAFIQNDFDLEGLLLVYEMQK 411

Query: 225 EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
            G     VTLT VL A +   DL+ GK  HGY    G +    L + L+ MY +      
Sbjct: 412 SGFAADSVTLTAVLSASSNTGDLQIGKQAHGYLIRHGIE-GEGLESYLIDMYAKSGRVEM 470

Query: 285 PARII--FERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSS 342
             R+   F+  K +D V W+++I GY+QSG   +A+ +F  M    +EP SVTL ++L +
Sbjct: 471 AQRVFDSFKNAK-RDEVTWNAMIAGYTQSGQPEKAILVFRAMLEAGLEPTSVTLASVLPA 529

Query: 343 CTR-QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS 401
           C      +  G  +HC+ ++  L+ +V +G AL++MYSKCG IT++  +F  M  +  V+
Sbjct: 530 CDPVGGGVYSGKQIHCFAVRRCLDTNVFVGTALIDMYSKCGEITTAENVFGGMTGKSTVT 589

Query: 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVM 461
           +TT+ISG G HG+G++AL LF  MQE G++PDA+T L+ +SACN++GLV E   L+ + M
Sbjct: 590 YTTMISGLGQHGFGKKALALFNSMQEKGLKPDAVTFLSAISACNYSGLVDEGLALYRS-M 648

Query: 462 KEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPS-TRILSSLVSACRIHGRLEV 520
               I+   +H+ C  DLL K+G++E+A + +  +  + +   I  SL+++C+  G+ E+
Sbjct: 649 DSFGISATPQHHCCVADLLAKAGRVEEAYEFIEGLGEEGNFVAIWGSLLASCKAQGKQEL 708

Query: 521 AEMLAHQLIEAEPE--NAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           A+++  +L++ E +  +A    LLS V +   NW  A+ + + MRA+GL K  G S I+
Sbjct: 709 AKLVTKKLLDIEKQYGHAGYSVLLSQVLAAESNWNSADSLRKEMRARGLKKEAGSSWIK 767



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 138/520 (26%), Positives = 253/520 (48%), Gaps = 19/520 (3%)

Query: 64  VISNSLISMYA-----KFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFR 118
           V+ NSL+++YA     + ++ +   +LFD MP R+ +SWN++   + + G    +LE+F 
Sbjct: 143 VLRNSLLNLYASSVRYREARVDVVRRLFDAMPKRNVVSWNTLFGWYVKTGRPQEALELFV 202

Query: 119 EMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDG-SFELSVFVSTALLDLYSK 177
            M   GF         I    +   +     Q++ L++  G  +   +FV ++ +D++S+
Sbjct: 203 RMLEDGFRPTPVSFVNIFP-AAVADDPSWPFQLYGLLVKYGVEYINDLFVVSSAIDMFSE 261

Query: 178 CHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLF-RAMQREGVKPTRVTLTI 236
                 A RVF++   +N   W  MI+G + +  +   IDLF + +    V    VT   
Sbjct: 262 FGDVQSARRVFDRAAKKNTEVWNTMITGYVQNGQFSEAIDLFSKILGSREVPLDVVTFLS 321

Query: 237 VLLACAELRDLRNGKAIHGYAYCCGF--DFDHHLSAALMHMYCECTEALHPARIIFERTK 294
            L A ++ +D+  G+ +HGY    G        L  AL+ MY  C   +  A  +F+R  
Sbjct: 322 ALTAASQSQDVSLGQQLHGY-LIKGMHRTLPVILGNALVVMYSRCGN-VQTAFDLFDRLP 379

Query: 295 VKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG 354
            KD+V W++++  + Q+    E + L   M+      +SVTL A+LS+ +    L  G  
Sbjct: 380 EKDIVTWNTMVTAFIQNDFDLEGLLLVYEMQKSGFAADSVTLTAVLSASSNTGDLQIGKQ 439

Query: 355 VHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEM--AARDFVSWTTLISGYGFH 412
            H Y+++ G+  +  + + L++MY+K G +  + ++F+    A RD V+W  +I+GY   
Sbjct: 440 AHGYLIRHGIEGE-GLESYLIDMYAKSGRVEMAQRVFDSFKNAKRDEVTWNAMIAGYTQS 498

Query: 413 GYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEH 472
           G  E+A+ +F  M E+G+EP ++T+ ++L AC+  G    +    +     + +   +  
Sbjct: 499 GQPEKAILVFRAMLEAGLEPTSVTLASVLPACDPVGGGVYSGKQIHCFAVRRCLDTNVFV 558

Query: 473 YACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE 532
               +D+  K G+I  A  V   M  K ST   ++++S    HG  + A  L + + E  
Sbjct: 559 GTALIDMYSKCGEITTAENVFGGMTGK-STVTYTTMISGLGQHGFGKKALALFNSMQEKG 617

Query: 533 PENAANYTLLSMV--CSESGNWLGAEEVWRVMRAKGLSKS 570
            +  A  T LS +  C+ SG       ++R M + G+S +
Sbjct: 618 LKPDA-VTFLSAISACNYSGLVDEGLALYRSMDSFGISAT 656



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 156/341 (45%), Gaps = 21/341 (6%)

Query: 224 REGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH--LSAALMHMYCECTE 281
           R  V+    T +  L ACA  R LR G+++H +             L  +L+++Y     
Sbjct: 98  RPPVRSDHYTYSAALTACARSRRLRLGRSVHAHMLRRARSLPDTAVLRNSLLNLYASSVR 157

Query: 282 ----ALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLL 337
                +   R +F+    ++VV W+++   Y ++G   EA++LF RM  +   P  V+ +
Sbjct: 158 YREARVDVVRRLFDAMPKRNVVSWNTLFGWYVKTGRPQEALELFVRMLEDGFRPTPVSFV 217

Query: 338 AILSSCTRQSFLSHGLGVHCYIMKAGLNF--DVSIGNALMNMYSKCGSITSSHQIFNEMA 395
            I  +       S    ++  ++K G+ +  D+ + ++ ++M+S+ G + S+ ++F+  A
Sbjct: 218 NIFPAAVADD-PSWPFQLYGLLVKYGVEYINDLFVVSSAIDMFSEFGDVQSARRVFDRAA 276

Query: 396 ARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP-DAITVLAILSACNHAGLVKEAE 454
            ++   W T+I+GY  +G   EA+ LF ++  S   P D +T L+ L+A + +  V   +
Sbjct: 277 KKNTEVWNTMITGYVQNGQFSEAIDLFSKILGSREVPLDVVTFLSALTAASQSQDVSLGQ 336

Query: 455 TLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKP----STRILSSLVS 510
            L   ++K     L +      V +  + G ++ A  +   +P K     +T + + + +
Sbjct: 337 QLHGYLIKGMHRTLPVILGNALVVMYSRCGNVQTAFDLFDRLPEKDIVTWNTMVTAFIQN 396

Query: 511 ACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGN 551
              + G L V EM            AA+   L+ V S S N
Sbjct: 397 DFDLEGLLLVYEMQKSGF-------AADSVTLTAVLSASSN 430



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 71/141 (50%), Gaps = 1/141 (0%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E+ + +++  L  +GL   +  L SV+ AC       + G Q+HC A++   D +  +  
Sbjct: 502 EKAILVFRAMLE-AGLEPTSVTLASVLPACDPVGGGVYSGKQIHCFAVRRCLDTNVFVGT 560

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +LI MY+K  +  +A  +F  M  + T+++ ++I+   Q+GF  ++L +F  M   G   
Sbjct: 561 ALIDMYSKCGEITTAENVFGGMTGKSTVTYTTMISGLGQHGFGKKALALFNSMQEKGLKP 620

Query: 128 KAELLAGIISLCSQIGELELG 148
            A      IS C+  G ++ G
Sbjct: 621 DAVTFLSAISACNYSGLVDEG 641



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 85/179 (47%), Gaps = 11/179 (6%)

Query: 277 CECTEALHPARIIFER-TKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP---N 332
           C+     H  R++ E   +    ++ ++++  Y+      EA++L + +      P   +
Sbjct: 45  CKQGRLDHARRLLLEALPRPPPTLLCNALLIAYADRALQEEALRLNALLNHAARPPVRSD 104

Query: 333 SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF-DVSI-GNALMNMYS-----KCGSIT 385
             T  A L++C R   L  G  VH ++++   +  D ++  N+L+N+Y+     +   + 
Sbjct: 105 HYTYSAALTACARSRRLRLGRSVHAHMLRRARSLPDTAVLRNSLLNLYASSVRYREARVD 164

Query: 386 SSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
              ++F+ M  R+ VSW TL   Y   G  +EAL+LF+ M E G  P  ++ + I  A 
Sbjct: 165 VVRRLFDAMPKRNVVSWNTLFGWYVKTGRPQEALELFVRMLEDGFRPTPVSFVNIFPAA 223


>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 624

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 180/561 (32%), Positives = 294/561 (52%), Gaps = 22/561 (3%)

Query: 36  ACAYAQTHQHFGL-------------QLHCTALKSGSDADPVISNSLISMYAKFSKPESA 82
           A  Y Q++ +F L             Q+   A+ SG   DPV+S+ L+  Y+     + A
Sbjct: 20  AWGYRQSYHNFSLSLLQNLSHPRSFNQILSHAIASGVFRDPVVSSKLL-YYSLSHDHDFA 78

Query: 83  YQ--LFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
           +   LF ++   +  SWN +   ++++ F   ++ ++  M   G +        ++  C+
Sbjct: 79  FSRTLFFQIHKPNVFSWNFMFRAYSRSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACA 138

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM--VIRNEVS 198
           ++  L  GR+IH+  +  G   L VFV  AL+  +S C     A  VF+ +  ++R+ VS
Sbjct: 139 RLSLLHKGREIHSSTLKLG-VHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVS 197

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREG-VKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
           W +MISG + S  Y+  + +F  +  +G + P  VTL   L  C  L  L  GK IHG  
Sbjct: 198 WNSMISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLF 257

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
              GF  D  + ++L+ MY +C + +  AR +F+R   ++ V W+S+I GY+QS    EA
Sbjct: 258 TGSGFVLDVFVGSSLIDMYSKCGQ-IEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEA 316

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
           ++LF  M++     ++ T+  +LS+C     L+ G  +H Y  +  +  D++  NAL+ M
Sbjct: 317 IELFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLNARNALIGM 376

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE-SGVEPDAIT 436
           YSKCG I  + +IF+ +   D  SW+ +ISG   +G  ++AL LF +M+  S + P+ IT
Sbjct: 377 YSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEIT 436

Query: 437 VLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
            L +L ACNH G V +    FN + +   +   IEHY C VDLLG++  + +A K + T+
Sbjct: 437 FLGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLLVEAEKFIRTL 496

Query: 497 PMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAE 556
           P++P   I  SL+ ACR HG +E+AE  A Q+ E EP       LLS V + +  W   +
Sbjct: 497 PIQPDVVIWRSLLFACRNHGNIELAEFAAKQIEELEPRRCGARVLLSNVYASASRWGDVK 556

Query: 557 EVWRVMRAKGLSKSYGFSRIE 577
            V + M  + + K  G S +E
Sbjct: 557 RVRKDMATQRIKKQPGCSFVE 577


>gi|357143056|ref|XP_003572787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Brachypodium distachyon]
          Length = 594

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 178/577 (30%), Positives = 298/577 (51%), Gaps = 15/577 (2%)

Query: 7   YEQTLHLYKQELHPSGLYS-NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           Y + + LY      SG+ S +    P   KAC   +  +H G  +HC AL +G   D  +
Sbjct: 23  YREAVALY------SGMRSFDHLTFPFAAKACGGLRLSRH-GRAVHCRALAAGFGDDTYV 75

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
            N+LISMY       +A  +F  M  R  +SWN++I    +N    R+LE+F EM   G 
Sbjct: 76  QNALISMYMGCGDVAAAEAVFCAMQNRTVVSWNAVIAGCVKNDCAERALEVFGEMAGDGT 135

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
            +    +  ++  C+Q   L +GR +H LV   G  + +  V  AL+D+Y KC +   A 
Sbjct: 136 EIDRATVVSVLPACAQAKNLSIGRAVHQLVEERGLADYAA-VKNALIDMYGKCRNLEGAR 194

Query: 186 RVFEQ-MVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM-QREGVK-PTRVTLTIVLLACA 242
           +VF+     ++ VSWT MI   + + + +    L   M    G   P  VT+  +L AC+
Sbjct: 195 KVFDDHKYDKDVVSWTVMIGAYVLNDHVEEAFALGHEMLMTSGAPWPNGVTMAYLLSACS 254

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
            L   R+ K +H      G + D  +  ALM  Y +C   +    +  E    +    W+
Sbjct: 255 RLSG-RHAKCMHAMCIRLGLESDIIVETALMDAYAKCHN-MKMMELTLENGS-RRTETWN 311

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
           + I GY+ +    +A++L  RM  E   P+S T+ +IL +    + +     +HCY++  
Sbjct: 312 ATISGYTHNEQEKKAIELLKRMIAESARPDSATMASILPAYAESADVRQATNIHCYLLTL 371

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
           G      I   L+N+Y+K G +  S  +F+ +  +D V+WTT+I+GYG HG  + ++ L+
Sbjct: 372 GFLRSTEITTGLINVYAKAGDLDVSWSLFDGLPEKDVVAWTTVIAGYGMHGQAQTSILLY 431

Query: 423 LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGK 482
             M + GV+P+ +T  ++L AC+H G+V E   LF ++     +    +HY+  VD++G+
Sbjct: 432 NRMVQLGVKPNTVTFASLLYACSHVGMVDEGLQLFEDMRGIHGVMPNADHYSSLVDMVGR 491

Query: 483 SGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLL 542
           +G+IE+A +++  MP++PST +  +L+ AC +H  ++  E+ A  L E EP+N  N+ LL
Sbjct: 492 AGRIEEAYRLIEDMPLEPSTSVWGALLGACVLHKNVKFGEVAAKHLFELEPKNTGNHVLL 551

Query: 543 SMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIENE 579
             + + +  W   ++V R M  KGLSK  G S +E+ 
Sbjct: 552 GNIYAAADRWSDVQDVRRRMAEKGLSKESGSSLVESR 588



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 111/232 (47%), Gaps = 5/232 (2%)

Query: 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHC 357
           V + +S++R Y+  G   EA+ L+S MR      + +T      +C       HG  VHC
Sbjct: 7   VSLANSLLRSYTGLGHYREAVALYSGMR----SFDHLTFPFAAKACGGLRLSRHGRAVHC 62

Query: 358 YIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEE 417
             + AG   D  + NAL++MY  CG + ++  +F  M  R  VSW  +I+G   +   E 
Sbjct: 63  RALAAGFGDDTYVQNALISMYMGCGDVAAAEAVFCAMQNRTVVSWNAVIAGCVKNDCAER 122

Query: 418 ALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYV 477
           AL++F EM   G E D  TV+++L AC  A  +     + + +++E+ +A         +
Sbjct: 123 ALEVFGEMAGDGTEIDRATVVSVLPACAQAKNLSIGRAV-HQLVEERGLADYAAVKNALI 181

Query: 478 DLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLI 529
           D+ GK   +E A KV             + ++ A  ++  +E A  L H+++
Sbjct: 182 DMYGKCRNLEGARKVFDDHKYDKDVVSWTVMIGAYVLNDHVEEAFALGHEML 233


>gi|147794059|emb|CAN66615.1| hypothetical protein VITISV_022030 [Vitis vinifera]
          Length = 818

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 169/494 (34%), Positives = 279/494 (56%), Gaps = 8/494 (1%)

Query: 11  LHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLI 70
           + + + E +P     N+     V+  CA ++   +FG QLH   + SG + D  ++N+L+
Sbjct: 237 MEMRRTETNP-----NSVTFACVLSVCA-SEIMINFGSQLHGLVVSSGLEMDSPVANTLL 290

Query: 71  SMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE 130
           +MYAK      A +LFD MP  D ++WN +I+ + QNGF   +  +F EM   G    + 
Sbjct: 291 AMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISAGMKPDSI 350

Query: 131 LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQ 190
             +  + L S+   L  G++IH  +I +G   L VF+ +AL+D+Y KC    +A ++F+Q
Sbjct: 351 TFSSFLPLLSEGATLRQGKEIHCYIIRNG-VSLDVFLKSALIDIYFKCRDVEMAHKIFDQ 409

Query: 191 MVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNG 250
               + V  TAMISG + +   +  +++FR + +E ++   VTL  VL ACA L  L  G
Sbjct: 410 RTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLG 469

Query: 251 KAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQ 310
           K +HG+    G     ++ +A+M MY +C + L  A   F     KD V W+S+I   SQ
Sbjct: 470 KELHGHILKNGHGGSCYVGSAIMDMYAKCGK-LDLAHQTFIGISXKDAVCWNSMITSCSQ 528

Query: 311 SGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSI 370
           +G   EA+ LF +M +   + + V++ A LS+C     L +G  +H ++M+     D+  
Sbjct: 529 NGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFA 588

Query: 371 GNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV 430
            +AL++MYSKCG++  + ++F+ M  ++ VSW ++I+ YG HG  +++L LF  M   G+
Sbjct: 589 ESALIDMYSKCGNLDLACRVFDMMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGI 648

Query: 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDAC 490
           +PD +T LAI+SAC HAG V E    F  + +E  I   +EHYAC VDL G++G++ +A 
Sbjct: 649 QPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAF 708

Query: 491 KVVSTMPMKPSTRI 504
            ++++MP  P   +
Sbjct: 709 GMINSMPFSPDAGV 722



 Score =  242 bits (617), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 160/533 (30%), Positives = 273/533 (51%), Gaps = 12/533 (2%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G   +    P VIKAC         G  +H      G + D  + +SLI  Y++      
Sbjct: 142 GTLPDKYTFPYVIKACG-GLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHD 200

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A  LFD MP +D + WN ++N + +NG +  +  +F EM        +   A ++S+C+ 
Sbjct: 201 ARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCAS 260

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
              +  G Q+H LV+  G  E+   V+  LL +Y+KC H   A R+F+ M   + V+W  
Sbjct: 261 EIMINFGSQLHGLVVSSG-LEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNG 319

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           MISG + +   D    LF  M   G+KP  +T +  L   +E   LR GK IH Y    G
Sbjct: 320 MISGYVQNGFMDEASCLFHEMISAGMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNG 379

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
              D  L +AL+ +Y +C +     +I  +RT V D+V+ +++I GY  +G  + A+++F
Sbjct: 380 VSLDVFLKSALIDIYFKCRDVEMAHKIFDQRTPV-DIVVCTAMISGYVLNGMNNNALEIF 438

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
             +  ER+  NSVTL ++L +C   + L+ G  +H +I+K G      +G+A+M+MY+KC
Sbjct: 439 RWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKC 498

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
           G +  +HQ F  ++ +D V W ++I+    +G  EEA+ LF +M  +G + D +++ A L
Sbjct: 499 GKLDLAHQTFIGISXKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAAL 558

Query: 442 SACNHAGLVKEAETLFNNVMKEKKIALAIEHYA--CYVDLLGKSGKIEDACKVVSTMPMK 499
           SAC +   +   + +   +M+    A   + +A    +D+  K G ++ AC+V   M  K
Sbjct: 559 SACANLPALHYGKEIHAFMMRG---AFRSDLFAESALIDMYSKCGNLDLACRVFDMMEEK 615

Query: 500 PSTRILSSLVSACRIHGRLEVAEMLAHQLI--EAEPENAANYTLLSMVCSESG 550
                 +S+++A   HGRL+ +  L H ++    +P++     ++S  C  +G
Sbjct: 616 NEVS-WNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIIS-ACGHAG 666



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 140/506 (27%), Positives = 249/506 (49%), Gaps = 19/506 (3%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEM 89
           L S+++ C       H G Q H   L +G   + ++   L+ MY        A  +F ++
Sbjct: 49  LVSILQTCTDPSGLSH-GRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQL 107

Query: 90  PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGR 149
               +  WN +I  FT  G +  +L  + +M  CG +        +I  C  +  + LGR
Sbjct: 108 RLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGR 167

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSK--CHHWLIALRVFEQMVIRNEVSWTAMISGCI 207
            +H  +   G FEL VFV ++L+  YS+  C H   A  +F++M  ++ V W  M++G +
Sbjct: 168 VVHDKIQFMG-FELDVFVGSSLIKFYSENGCIH--DARYLFDRMPSKDGVLWNVMLNGYV 224

Query: 208 DSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
            + ++D    +F  M+R    P  VT   VL  CA    +  G  +HG     G + D  
Sbjct: 225 KNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSP 284

Query: 268 LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
           ++  L+ MY +C   L  AR +F+     D+V W+ +I GY Q+G + EA  LF  M   
Sbjct: 285 VANTLLAMYAKCGH-LFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISA 343

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
            ++P+S+T  + L   +  + L  G  +HCYI++ G++ DV + +AL+++Y KC  +  +
Sbjct: 344 GMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMA 403

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHA 447
           H+IF++    D V  T +ISGY  +G    AL++F  + +  +  +++T+ ++L AC   
Sbjct: 404 HKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGL 463

Query: 448 GLVKEAETLFNNVMKEKKIALAIEHYACYV-----DLLGKSGKIEDACKVVSTMPMKPST 502
             +   + L  +++K           +CYV     D+  K GK++ A +    +  K + 
Sbjct: 464 AALTLGKELHGHILKNGHGG------SCYVGSAIMDMYAKCGKLDLAHQTFIGISXKDAV 517

Query: 503 RILSSLVSACRIHGRLEVAEMLAHQL 528
              +S++++C  +G+ E A  L  Q+
Sbjct: 518 -CWNSMITSCSQNGKPEEAIDLFRQM 542



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 107/364 (29%), Positives = 185/364 (50%), Gaps = 3/364 (0%)

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
           A  L  I+  C+    L  GRQ HA ++V+G    +  + T LL +Y  C  +L A  +F
Sbjct: 46  APQLVSILQTCTDPSGLSHGRQAHAQMLVNG-IGYNGILGTKLLGMYVLCGAFLDAKNIF 104

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
            Q+ +     W  MI G      +D  +  +  M   G  P + T   V+ AC  L  + 
Sbjct: 105 YQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVA 164

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
            G+ +H      GF+ D  + ++L+  Y E    +H AR +F+R   KD V+W+ ++ GY
Sbjct: 165 LGRVVHDKIQFMGFELDVFVGSSLIKFYSE-NGCIHDARYLFDRMPSKDGVLWNVMLNGY 223

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
            ++GD   A  +F  MR     PNSVT   +LS C  +  ++ G  +H  ++ +GL  D 
Sbjct: 224 VKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDS 283

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
            + N L+ MY+KCG +  + ++F+ M   D V+W  +ISGY  +G+ +EA  LF EM  +
Sbjct: 284 PVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISA 343

Query: 429 GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIED 488
           G++PD+IT  + L   +    +++ + +   +++   ++L +   +  +D+  K   +E 
Sbjct: 344 GMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIR-NGVSLDVFLKSALIDIYFKCRDVEM 402

Query: 489 ACKV 492
           A K+
Sbjct: 403 AHKI 406


>gi|302801049|ref|XP_002982281.1| hypothetical protein SELMODRAFT_116350 [Selaginella moellendorffii]
 gi|300149873|gb|EFJ16526.1| hypothetical protein SELMODRAFT_116350 [Selaginella moellendorffii]
          Length = 515

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 172/520 (33%), Positives = 285/520 (54%), Gaps = 31/520 (5%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
            T  L  V++AC  +      G  +H   ++SG + D ++  SL++MYAK      A ++
Sbjct: 3   KTLALSMVLEACG-SLAELKGGKLVHAHVIESGLEGD-LVGISLVNMYAKCGTVGEARKV 60

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL 145
           F+ +  R  I WNS+I  + +   +  +L +FREM   G          +++ C    +L
Sbjct: 61  FERINNRSRILWNSMITAYQERDPH-EALHLFREMQPEGVSPDRITFMTVLNACVNAADL 119

Query: 146 ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISG 205
           E GR IH   IVD  F   V V+TAL ++Y+KC     A  VF+ MV R+ VSW  MI+ 
Sbjct: 120 ENGRTIHRR-IVDSGFAADVRVATALFNMYAKCGSLGEARGVFDSMVFRDVVSWNNMIAA 178

Query: 206 CIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFD 265
            +  ++ +  I L  AMQ EG++P + T   +L AC++   L +G+ IH         FD
Sbjct: 179 YVQGRDGEGAISLCWAMQLEGMRPDKATFASLLNACSDPNRLVDGRQIHSEI------FD 232

Query: 266 HHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR 325
           +  S +  H                     +D+ +W+S+I  Y Q G+  +A++L+ +M 
Sbjct: 233 NIFSNSQQHH--------------------RDLFLWTSMITAYEQHGEYRKALELYEQMH 272

Query: 326 LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSIT 385
             ++E + VT +++L++C   S L  G  +H  +M+ GL  DV++ N+++ MY KCGS  
Sbjct: 273 SRQVEADRVTFISVLNACAHLSDLRQGQAIHARVMRRGLATDVAVANSIVFMYGKCGSFD 332

Query: 386 SSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
            +  +F +   +D   WT LI+ Y  HG+GE+AL +F  +++ G+E   +T +A+LSAC+
Sbjct: 333 EASIVFEKTKHKDISLWTALIASYARHGHGEQALWIFRRLRQDGIELSNLTFVAMLSACS 392

Query: 446 HAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRIL 505
           H GL++E    F + M E  I   +EHY+C VDLL ++G +  A + +S MP+  +T +L
Sbjct: 393 HVGLIEEGCEFFAS-MAELGIEPNMEHYSCLVDLLARAGHLHTAEEFLSRMPVAANTIVL 451

Query: 506 SSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV 545
           ++L++ACR+HG +E A  +A +L   +PE+ A Y  LS +
Sbjct: 452 TALLAACRVHGDVERARRVAEKLEALDPESEAPYVTLSNI 491



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 78/241 (32%), Positives = 132/241 (54%), Gaps = 7/241 (2%)

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
           P  + L++VL AC  L +L+ GK +H +    G + D  +  +L++MY +C   +  AR 
Sbjct: 2   PKTLALSMVLEACGSLAELKGGKLVHAHVIESGLEGD-LVGISLVNMYAKCG-TVGEARK 59

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
           +FER   +  ++W+S+I  Y Q  D  EA+ LF  M+ E + P+ +T + +L++C   + 
Sbjct: 60  VFERINNRSRILWNSMITAY-QERDPHEALHLFREMQPEGVSPDRITFMTVLNACVNAAD 118

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
           L +G  +H  I+ +G   DV +  AL NMY+KCGS+  +  +F+ M  RD VSW  +I+ 
Sbjct: 119 LENGRTIHRRIVDSGFAADVRVATALFNMYAKCGSLGEARGVFDSMVFRDVVSWNNMIAA 178

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAET----LFNNVMKEK 464
           Y     GE A+ L   MQ  G+ PD  T  ++L+AC+    + +       +F+N+    
Sbjct: 179 YVQGRDGEGAISLCWAMQLEGMRPDKATFASLLNACSDPNRLVDGRQIHSEIFDNIFSNS 238

Query: 465 K 465
           +
Sbjct: 239 Q 239


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 172/535 (32%), Positives = 291/535 (54%), Gaps = 5/535 (0%)

Query: 46  FGLQLHC-TALKSGSDADPVIS-NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINC 103
           FG  +H    + + +  D ++  NSLI++YAK  +   A  LFD M  R+ +SW +++  
Sbjct: 43  FGKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVARILFDGMRKRNVVSWGALMAG 102

Query: 104 FTQNGFYVRSLEMFREMYLCGFVLKAE-LLAGIISLCSQIGELELGRQIHALVIVDGSFE 162
           +  NG  +  L +F+ M    ++   E + A IIS CS  G++  G Q H   +  G   
Sbjct: 103 YFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEGWQCHGYALKSG-LV 161

Query: 163 LSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM 222
              +V  AL+ +YS+      A+ V+ ++   +  S+  +I+G +++      +++   M
Sbjct: 162 FHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENGYPSEALEVLDRM 221

Query: 223 QREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEA 282
             E +    VT       C+ L+DLR G  +H   +  G ++D  +S+A++ MY +C   
Sbjct: 222 VDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFVSSAIIDMYGKCGNI 281

Query: 283 LHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSS 342
           L+ AR +F R + K+VV W++I+  YSQ+G   EA+  F  M ++ + PN  T   +L+S
Sbjct: 282 LN-ARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLLNS 340

Query: 343 CTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSW 402
           C   S L HG  +H  I K+G    + +GNAL+NMYSK GSI ++H++F EM  RD ++W
Sbjct: 341 CAGISALGHGKLLHTRIKKSGFEDHIIVGNALINMYSKSGSIEAAHKVFLEMICRDSITW 400

Query: 403 TTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462
           + +I G   HG G EAL +F EM  +   P  +T + +LSAC H G V+E     N +MK
Sbjct: 401 SAMICGLSHHGLGREALVVFQEMLAAKECPHYVTFVGVLSACAHLGSVQEGFYYLNQLMK 460

Query: 463 EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAE 522
           +  I   +EHY C V LL K+G++++A   + + P+K       +L+SAC +H    + +
Sbjct: 461 QTGIEPGVEHYTCIVGLLCKAGRLDEAENFMKSTPVKWDVVAWRTLLSACHVHQNYGLGK 520

Query: 523 MLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +A  +++ +P +   Y LLS + +++  W G  ++ ++MR + + K  G S IE
Sbjct: 521 KVAELVLQMDPGDVGTYILLSNMYAKAKRWDGVVKIRKLMRERNVKKEPGASWIE 575



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 2/123 (1%)

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIF 391
           +++ LL + S+ T+       +  H  I       ++   N+L+N+Y+KC  I  +  +F
Sbjct: 27  HTIQLLKV-SADTKNLKFGKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVARILF 85

Query: 392 NEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG-VEPDAITVLAILSACNHAGLV 450
           + M  R+ VSW  L++GY  +G   E L+LF  M     + P+      I+S+C+ +G V
Sbjct: 86  DGMRKRNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQV 145

Query: 451 KEA 453
            E 
Sbjct: 146 VEG 148


>gi|90657601|gb|ABD96900.1| hypothetical protein [Cleome spinosa]
          Length = 924

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 191/605 (31%), Positives = 319/605 (52%), Gaps = 35/605 (5%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V  +F +  L ++K E+   G+  + +I  SV+K+CA        G QLH  ALKS    
Sbjct: 258 VQNNFLDGGLKMFK-EMQKVGVGVSQSIYASVLKSCA-TLPDLRLGTQLHAHALKSDFVK 315

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ--NGFYVRSLEMFRE 119
           D ++  + + MYAK +  + A +LFD     +  S+N++I  ++Q  NGF  R+L +FR+
Sbjct: 316 DGIVRTATLDMYAKCNNMQDAQRLFDMSENLNLQSYNAMITGYSQKDNGF--RALLLFRK 373

Query: 120 MYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH 179
           +           L+G +  C+ +  L  G Q+H L     +F  ++ V+ A +D+Y KC 
Sbjct: 374 LSKSSLGFDEISLSGALRACATVKGLSEGLQLHGLA-TKSNFSRNICVANAFIDMYGKCE 432

Query: 180 HWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLL 239
               A RVF++M  ++ VSW A+I+    ++     +++  +M R G++P   T   VL 
Sbjct: 433 ALDEACRVFDEMGRKDAVSWNAIIAAHEQNEERSKTLNILVSMLRSGMEPDEYTFGSVLK 492

Query: 240 ACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCEC-------------------- 279
           ACA    L +G  IH      G   + ++ ++L+ MY +C                    
Sbjct: 493 ACAG-DSLNHGMEIHTTIVKLGMASNPYIGSSLVDMYSKCGMIDEAEKIHNKIFIGIGDS 551

Query: 280 -TEALHPARI-----IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNS 333
            T + HP  I     I +R   + +V W++II GY       +A + F+RM    I P+ 
Sbjct: 552 NTYSEHPETIEEPKGIQDRRVQEMIVSWNAIISGYVMRKQSEDAQRFFNRMMEMGITPDK 611

Query: 334 VTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNE 393
            T   +L +C   + +  G  +H +++K  L +DV I + L++MYSKCG++  S  +F +
Sbjct: 612 FTYSTVLDTCANLASIGLGKQIHAHVIKKELQYDVYICSTLVDMYSKCGNLHDSRLMFEK 671

Query: 394 MAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEA 453
              RDFV+W  +I GY  HG GEEA++LF  M    + P+  T +++L AC H GLV+  
Sbjct: 672 APIRDFVTWNAMICGYAHHGMGEEAIKLFESMVLMNIMPNHATFVSLLRACAHMGLVERG 731

Query: 454 ETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACR 513
              F+ + KE  +   +EHY+  VD+LGKSG++E A +++  MP +    I  +L+SAC+
Sbjct: 732 LDYFHMMKKEYGLDPRLEHYSNMVDILGKSGEVEKALELIQEMPFEADDVIWRTLLSACK 791

Query: 514 IH-GRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYG 572
           I+   +E AE+ A+ L+  +P++++ Y LLS + +++G W  A E+   MR+  L K  G
Sbjct: 792 INRNNVEAAEVAANALLRLDPQDSSTYILLSNIYADAGMWDKASELRTAMRSDKLKKEPG 851

Query: 573 FSRIE 577
            S +E
Sbjct: 852 CSWVE 856



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 145/494 (29%), Positives = 253/494 (51%), Gaps = 11/494 (2%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V K   +Q  H   ++ H   + S     P+V  +    Q + + G   + T L  G   
Sbjct: 55  VFKECAKQRAHELGKQAHAHMIIS--GFRPTVFVSNCLLQLYINCGNLGYATKLFDGMPL 112

Query: 62  DPVIS-NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
             V+S N++I  YA  +    A   F+ MP RD +SWNS+++ F Q G  + S+++F EM
Sbjct: 113 RDVVSWNAMIFGYAASNDMVRASLCFEMMPTRDVVSWNSMLSGFLQTGENLESVKVFIEM 172

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
              G     +  + I+ +CS +   +LG QIH + +  G ++  V   +ALLD+Y+KC  
Sbjct: 173 GRSGVEFDNKSFSVILKVCSILENYKLGTQIHGIALRMG-YDTDVVSGSALLDMYAKCKR 231

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
              +  VF  M  +N +SW+A+I+GC+ +   D G+ +F+ MQ+ GV  ++     VL +
Sbjct: 232 LDESFTVFYAMPQKNWISWSAIIAGCVQNNFLDGGLKMFKEMQKVGVGVSQSIYASVLKS 291

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
           CA L DLR G  +H +A    F  D  +  A + MY +C   +  A+ +F+ ++  ++  
Sbjct: 292 CATLPDLRLGTQLHAHALKSDFVKDGIVRTATLDMYAKCNN-MQDAQRLFDMSENLNLQS 350

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           ++++I GYSQ  +   A+ LF ++    +  + ++L   L +C     LS GL +H    
Sbjct: 351 YNAMITGYSQKDNGFRALLLFRKLSKSSLGFDEISLSGALRACATVKGLSEGLQLHGLAT 410

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
           K+  + ++ + NA ++MY KC ++  + ++F+EM  +D VSW  +I+ +  +    + L 
Sbjct: 411 KSNFSRNICVANAFIDMYGKCEALDEACRVFDEMGRKDAVSWNAIIAAHEQNEERSKTLN 470

Query: 421 LFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVD 478
           + + M  SG+EPD  T  ++L AC    L    E     V    K+ +A   Y  +  VD
Sbjct: 471 ILVSMLRSGMEPDEYTFGSVLKACAGDSLNHGMEIHTTIV----KLGMASNPYIGSSLVD 526

Query: 479 LLGKSGKIEDACKV 492
           +  K G I++A K+
Sbjct: 527 MYSKCGMIDEAEKI 540



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 129/290 (44%), Gaps = 31/290 (10%)

Query: 233 TLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCEC------------- 279
             + V   CA+ R    GK  H +    GF     +S  L+ +Y  C             
Sbjct: 51  NFSFVFKECAKQRAHELGKQAHAHMIISGFRPTVFVSNCLLQLYINCGNLGYATKLFDGM 110

Query: 280 -----------------TEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFS 322
                            +  +  A + FE    +DVV W+S++ G+ Q+G+  E++K+F 
Sbjct: 111 PLRDVVSWNAMIFGYAASNDMVRASLCFEMMPTRDVVSWNSMLSGFLQTGENLESVKVFI 170

Query: 323 RMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCG 382
            M    +E ++ +   IL  C+       G  +H   ++ G + DV  G+AL++MY+KC 
Sbjct: 171 EMGRSGVEFDNKSFSVILKVCSILENYKLGTQIHGIALRMGYDTDVVSGSALLDMYAKCK 230

Query: 383 SITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILS 442
            +  S  +F  M  ++++SW+ +I+G   + + +  L++F EMQ+ GV        ++L 
Sbjct: 231 RLDESFTVFYAMPQKNWISWSAIIAGCVQNNFLDGGLKMFKEMQKVGVGVSQSIYASVLK 290

Query: 443 ACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKV 492
           +C     ++    L  + +K   +   I   A  +D+  K   ++DA ++
Sbjct: 291 SCATLPDLRLGTQLHAHALKSDFVKDGIVRTAT-LDMYAKCNNMQDAQRL 339


>gi|357521772|ref|XP_003612377.1| Selenium binding protein-like protein [Medicago truncatula]
 gi|355513712|gb|AES95335.1| Selenium binding protein-like protein [Medicago truncatula]
          Length = 611

 Score =  298 bits (762), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 166/502 (33%), Positives = 287/502 (57%), Gaps = 11/502 (2%)

Query: 85  LFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGE 144
           LF ++   +   +NS+I  + ++     SL ++++M   G+         ++  CS I +
Sbjct: 63  LFRQIHSPNVYIFNSMIKGYAKSNNPTMSLHLYKQMLQNGYSPDHFTFPFVLKACSFIYD 122

Query: 145 LELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMIS 204
              G+ +H+ ++  G FE +V+V+T LL++Y +C +    L+VF+++   N V+WT +I+
Sbjct: 123 QVSGKCVHSCILKSG-FEANVYVATGLLNMYVECKNMESGLKVFDKIPKWNVVAWTCLIN 181

Query: 205 GCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFD- 263
           G + +      +++F+ M R GV+   VT+   L+ACA  RD+  G+ +H      G+D 
Sbjct: 182 GYVINDQPREALEVFKEMGRWGVEANEVTMVNALIACARCRDVDTGRWVHERVCKAGYDP 241

Query: 264 --FDHH----LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
             F  +    L+ A++ MY +C   L+ AR +F +   +++V W+ +I  Y+Q    +EA
Sbjct: 242 FVFASNSNVILATAIVEMYAKCG-WLNVARELFNKMPERNIVAWNCMINAYNQYERYNEA 300

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
           + LF  M      P+  T L++LS C R+  L+ G  VH Y++K+ +  D+++  AL++M
Sbjct: 301 LGLFFYMLANGFCPDKATFLSVLSVCARRCVLALGETVHAYLLKSNMAKDIALATALLDM 360

Query: 378 YSKCGSITSSHQIFNE-MAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE-SGVEPDAI 435
           Y+K G + S+ +IFN  +  +D V WT++I+    HG+G EAL LF  MQE S + PD I
Sbjct: 361 YAKNGELGSAQKIFNNSLEKKDVVMWTSMINALAIHGHGNEALSLFQIMQEDSSLVPDHI 420

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           T + +L AC+H GLV+EA+  FN + K   I    EHY+C VDLL ++G   +A K++ T
Sbjct: 421 TYIGVLFACSHVGLVEEAQKQFNLMTKSYGILPEKEHYSCMVDLLSRAGHFREAEKLMET 480

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGA 555
           M ++P+  I  +L++ C+IH  + VA  +  +L E EP  +  Y LLS + + SG W   
Sbjct: 481 MSIRPNIAIWGALLNGCQIHENIPVASQVKVRLAELEPIQSGIYALLSNIYANSGKWEEV 540

Query: 556 EEVWRVMRAKGLSKSYGFSRIE 577
               ++M+ K ++K+ G S +E
Sbjct: 541 NRTRKMMKHKRIAKTIGHSSVE 562



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 126/472 (26%), Positives = 227/472 (48%), Gaps = 13/472 (2%)

Query: 10  TLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSL 69
           +LHLYKQ L  +G   +    P V+KAC++    Q  G  +H   LKSG +A+  ++  L
Sbjct: 91  SLHLYKQMLQ-NGYSPDHFTFPFVLKACSFIYD-QVSGKCVHSCILKSGFEANVYVATGL 148

Query: 70  ISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKA 129
           ++MY +    ES  ++FD++P  + ++W  +IN +  N     +LE+F+EM   G     
Sbjct: 149 LNMYVECKNMESGLKVFDKIPKWNVVAWTCLINGYVINDQPREALEVFKEMGRWGVEANE 208

Query: 130 ELLAGIISLCSQIGELELGRQIHALVIVDG------SFELSVFVSTALLDLYSKCHHWLI 183
             +   +  C++  +++ GR +H  V   G      +   +V ++TA++++Y+KC    +
Sbjct: 209 VTMVNALIACARCRDVDTGRWVHERVCKAGYDPFVFASNSNVILATAIVEMYAKCGWLNV 268

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
           A  +F +M  RN V+W  MI+     + Y+  + LF  M   G  P + T   VL  CA 
Sbjct: 269 ARELFNKMPERNIVAWNCMINAYNQYERYNEALGLFFYMLANGFCPDKATFLSVLSVCAR 328

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
              L  G+ +H Y        D  L+ AL+ MY +  E     +I     + KDVV+W+S
Sbjct: 329 RCVLALGETVHAYLLKSNMAKDIALATALLDMYAKNGELGSAQKIFNNSLEKKDVVMWTS 388

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLE-RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
           +I   +  G  +EA+ LF  M+ +  + P+ +T + +L +C+    +         + K+
Sbjct: 389 MINALAIHGHGNEALSLFQIMQEDSSLVPDHITYIGVLFACSHVGLVEEAQKQFNLMTKS 448

Query: 363 -GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS-WTTLISGYGFHGYGEEALQ 420
            G+  +    + ++++ S+ G    + ++   M+ R  ++ W  L++G   H     A Q
Sbjct: 449 YGILPEKEHYSCMVDLLSRAGHFREAEKLMETMSIRPNIAIWGALLNGCQIHENIPVASQ 508

Query: 421 LFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEH 472
           + + + E  +EP    + A+LS         E       +MK K+IA  I H
Sbjct: 509 VKVRLAE--LEPIQSGIYALLSNIYANSGKWEEVNRTRKMMKHKRIAKTIGH 558



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 94/164 (57%)

Query: 281 EALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAIL 340
           E  + A ++F +    +V I++S+I+GY++S + + ++ L+ +M      P+  T   +L
Sbjct: 55  EYFNYANLLFRQIHSPNVYIFNSMIKGYAKSNNPTMSLHLYKQMLQNGYSPDHFTFPFVL 114

Query: 341 SSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFV 400
            +C+       G  VH  I+K+G   +V +   L+NMY +C ++ S  ++F+++   + V
Sbjct: 115 KACSFIYDQVSGKCVHSCILKSGFEANVYVATGLLNMYVECKNMESGLKVFDKIPKWNVV 174

Query: 401 SWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
           +WT LI+GY  +    EAL++F EM   GVE + +T++  L AC
Sbjct: 175 AWTCLINGYVINDQPREALEVFKEMGRWGVEANEVTMVNALIAC 218


>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  298 bits (762), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 168/555 (30%), Positives = 303/555 (54%), Gaps = 9/555 (1%)

Query: 30  LPSVIKACAYAQTHQ--HFGLQLHCTAL---KSGSDADPVISNSLISMYAKFSKPESAYQ 84
           L  V+    ++ T +   FG  +H   +   ++  D+D    NSLI++Y+K  + + A +
Sbjct: 23  LKEVVNLLKFSATAKSLRFGKTIHAQLVVRNQTSKDSDITQINSLINLYSKCGQSKCARK 82

Query: 85  LFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII-SLCSQIG 143
           LFD M  R+ +SW++++  +   G  +  L +FR +         E +  I+ S C+  G
Sbjct: 83  LFDRMLQRNVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLSCCADSG 142

Query: 144 ELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMI 203
            ++ G+Q H  ++  G   L  +V  AL+ +YS+C H   A+++ + +   +  S+ +++
Sbjct: 143 RVKEGKQCHGYLLKSGLL-LHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYNSIL 201

Query: 204 SGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFD 263
           S  ++S        + + M  E V    VT   VL  CA++RDL+ G  IH      G  
Sbjct: 202 SALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLKTGLV 261

Query: 264 FDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSR 323
           FD  +S+ L+  Y +C E L+ AR  F+  + ++VV W++++  Y Q+G   E + LF++
Sbjct: 262 FDVFVSSTLIDTYGKCGEVLN-ARKQFDGLRDRNVVAWTAVLTAYLQNGHFEETLNLFTK 320

Query: 324 MRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS 383
           M LE   PN  T   +L++C     L++G  +H  I+ +G    + +GNAL+NMYSK G+
Sbjct: 321 MELEDTRPNEFTFAVLLNACASLVALAYGDLLHGRIVMSGFKNHLIVGNALINMYSKSGN 380

Query: 384 ITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
           I SS+ +F+ M  RD ++W  +I GY  HG G++AL +F +M  +G  P+ +T + +LSA
Sbjct: 381 IDSSYNVFSNMMNRDVITWNAMICGYSHHGLGKQALLVFQDMMSAGECPNYVTFIGVLSA 440

Query: 444 CNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVV-STMPMKPST 502
           C H  LV+E    F+ +MK+  +   +EHY C V LLG++G +++A   + +T  +K   
Sbjct: 441 CVHLALVQEGFYYFDQIMKKFDVEPGLEHYTCMVALLGRAGLLDEAENFMKTTTQVKWDV 500

Query: 503 RILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVM 562
               +L++AC IH    + + +   +I+ +P +   YTLLS + +++  W G  ++ ++M
Sbjct: 501 VAWRTLLNACHIHRNYNLGKQITETVIQMDPHDVGTYTLLSNMHAKARKWDGVVKIRKLM 560

Query: 563 RAKGLSKSYGFSRIE 577
           + + + K  G S ++
Sbjct: 561 KERNIKKEPGASWLD 575


>gi|115460348|ref|NP_001053774.1| Os04g0602600 [Oryza sativa Japonica Group]
 gi|38344148|emb|CAE01824.2| OSJNBa0041A02.15 [Oryza sativa Japonica Group]
 gi|113565345|dbj|BAF15688.1| Os04g0602600 [Oryza sativa Japonica Group]
 gi|125549608|gb|EAY95430.1| hypothetical protein OsI_17272 [Oryza sativa Indica Group]
          Length = 804

 Score =  298 bits (762), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 177/539 (32%), Positives = 305/539 (56%), Gaps = 12/539 (2%)

Query: 48  LQLHCTALKSGSD--ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT 105
            QL+   +K G +   D  + +S I M+++F   +SA ++FD    ++T  WN++I  + 
Sbjct: 232 FQLYGLLVKYGVEYINDLFVVSSAIDMFSEFGDVQSARRVFDRAAKKNTEVWNTMITGYV 291

Query: 106 QNGFYVRSLEMFREMYLCGFV-LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELS 164
           QNG +  ++++F ++     V L        ++  SQ  ++ LG+Q+H  +I      L 
Sbjct: 292 QNGQFSEAIDLFSKILGSREVPLDVVTFLSALTAASQSQDVSLGQQLHGYLIKGMHRTLP 351

Query: 165 VFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR 224
           V +  AL+ +YS+C +   A  +F+++  ++ V+W  M++  I +     G+ L   MQ+
Sbjct: 352 VILGNALVVMYSRCGNVQTAFDLFDRLPEKDIVTWNTMVTAFIQNDFDLEGLLLVYEMQK 411

Query: 225 EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
            G     VTLT VL A +   DL+ GK  HGY    G +    L + L+ MY +      
Sbjct: 412 SGFAADSVTLTAVLSASSNTGDLQIGKQAHGYLIRHGIE-GEGLESYLIDMYAKSGRVEM 470

Query: 285 PARII--FERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSS 342
             R+   F+  K +D V W+++I GY+QSG   +A+ +F  M    +EP SVTL ++L +
Sbjct: 471 AQRVFDSFKNAK-RDEVTWNAMIAGYTQSGQPEKAILVFRAMLEAGLEPTSVTLASVLPA 529

Query: 343 CTR-QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS 401
           C      +  G  +HC+ ++  L+ +V +G AL++MYSKCG IT++  +F  M  +  V+
Sbjct: 530 CDPVGGGVYSGKQIHCFAVRRCLDTNVFVGTALIDMYSKCGEITTAENVFGGMTGKSTVT 589

Query: 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVM 461
           +TT+ISG G HG+G++AL LF  MQE G++PDA+T L+ +SACN++GLV E   L+ + M
Sbjct: 590 YTTMISGLGQHGFGKKALALFNSMQEKGLKPDAVTFLSAISACNYSGLVDEGLALYRS-M 648

Query: 462 KEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPS-TRILSSLVSACRIHGRLEV 520
               I+   +H+ C  DLL K+G++E+A + +  +  + +   I  SL+++C+  G+ E+
Sbjct: 649 DSFGISATPQHHCCVADLLAKAGRVEEAYEFIEGLGEEGNFVAIWGSLLASCKAQGKQEL 708

Query: 521 AEMLAHQLIEAEPE--NAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           A+++  +L++ E +  +A    LLS V +   NW  A+ + + MRA+GL K  G S I+
Sbjct: 709 AKLVTKKLLDIEKQYGHAGYSVLLSQVLAAESNWNSADSLRKEMRARGLKKEAGSSWIK 767



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 138/520 (26%), Positives = 253/520 (48%), Gaps = 19/520 (3%)

Query: 64  VISNSLISMYA-----KFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFR 118
           V+ NSL+++YA     + ++ +   +LFD MP R+ +SWN++   + + G    +LE+F 
Sbjct: 143 VLRNSLLNLYASSVRYREARVDVVRRLFDAMPKRNVVSWNTLFGWYVKTGRPQEALELFV 202

Query: 119 EMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDG-SFELSVFVSTALLDLYSK 177
            M   GF         I    +   +     Q++ L++  G  +   +FV ++ +D++S+
Sbjct: 203 RMLEDGFRPTPVSFVNIFP-AAVADDPSWPFQLYGLLVKYGVEYINDLFVVSSAIDMFSE 261

Query: 178 CHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLF-RAMQREGVKPTRVTLTI 236
                 A RVF++   +N   W  MI+G + +  +   IDLF + +    V    VT   
Sbjct: 262 FGDVQSARRVFDRAAKKNTEVWNTMITGYVQNGQFSEAIDLFSKILGSREVPLDVVTFLS 321

Query: 237 VLLACAELRDLRNGKAIHGYAYCCGF--DFDHHLSAALMHMYCECTEALHPARIIFERTK 294
            L A ++ +D+  G+ +HGY    G        L  AL+ MY  C   +  A  +F+R  
Sbjct: 322 ALTAASQSQDVSLGQQLHGY-LIKGMHRTLPVILGNALVVMYSRCGN-VQTAFDLFDRLP 379

Query: 295 VKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG 354
            KD+V W++++  + Q+    E + L   M+      +SVTL A+LS+ +    L  G  
Sbjct: 380 EKDIVTWNTMVTAFIQNDFDLEGLLLVYEMQKSGFAADSVTLTAVLSASSNTGDLQIGKQ 439

Query: 355 VHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEM--AARDFVSWTTLISGYGFH 412
            H Y+++ G+  +  + + L++MY+K G +  + ++F+    A RD V+W  +I+GY   
Sbjct: 440 AHGYLIRHGIEGE-GLESYLIDMYAKSGRVEMAQRVFDSFKNAKRDEVTWNAMIAGYTQS 498

Query: 413 GYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEH 472
           G  E+A+ +F  M E+G+EP ++T+ ++L AC+  G    +    +     + +   +  
Sbjct: 499 GQPEKAILVFRAMLEAGLEPTSVTLASVLPACDPVGGGVYSGKQIHCFAVRRCLDTNVFV 558

Query: 473 YACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE 532
               +D+  K G+I  A  V   M  K ST   ++++S    HG  + A  L + + E  
Sbjct: 559 GTALIDMYSKCGEITTAENVFGGMTGK-STVTYTTMISGLGQHGFGKKALALFNSMQEKG 617

Query: 533 PENAANYTLLSMV--CSESGNWLGAEEVWRVMRAKGLSKS 570
            +  A  T LS +  C+ SG       ++R M + G+S +
Sbjct: 618 LKPDA-VTFLSAISACNYSGLVDEGLALYRSMDSFGISAT 656



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 71/141 (50%), Gaps = 1/141 (0%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E+ + +++  L  +GL   +  L SV+ AC       + G Q+HC A++   D +  +  
Sbjct: 502 EKAILVFRAMLE-AGLEPTSVTLASVLPACDPVGGGVYSGKQIHCFAVRRCLDTNVFVGT 560

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +LI MY+K  +  +A  +F  M  + T+++ ++I+   Q+GF  ++L +F  M   G   
Sbjct: 561 ALIDMYSKCGEITTAENVFGGMTGKSTVTYTTMISGLGQHGFGKKALALFNSMQEKGLKP 620

Query: 128 KAELLAGIISLCSQIGELELG 148
            A      IS C+  G ++ G
Sbjct: 621 DAVTFLSAISACNYSGLVDEG 641



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 86/179 (48%), Gaps = 11/179 (6%)

Query: 277 CECTEALHPARIIFER-TKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP---N 332
           C+     H  R++ E   +    ++ ++++  Y+      EA++L++ +      P   +
Sbjct: 45  CKQGRLDHARRLLLEALPRPPPTLLCNALLIAYAARALPEEALRLYALLNHAARPPVRSD 104

Query: 333 SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF-DVSI-GNALMNMYS-----KCGSIT 385
             T  A L++C R   L  G  VH ++++   +  D ++  N+L+N+Y+     +   + 
Sbjct: 105 HYTYSAALTACARSRRLRLGRSVHAHMLRRARSLPDTAVLRNSLLNLYASSVRYREARVD 164

Query: 386 SSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
              ++F+ M  R+ VSW TL   Y   G  +EAL+LF+ M E G  P  ++ + I  A 
Sbjct: 165 VVRRLFDAMPKRNVVSWNTLFGWYVKTGRPQEALELFVRMLEDGFRPTPVSFVNIFPAA 223


>gi|359489798|ref|XP_002274780.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 804

 Score =  298 bits (762), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 157/523 (30%), Positives = 290/523 (55%), Gaps = 4/523 (0%)

Query: 53  TALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVR 112
           + +K G +++  ++ +LI  Y+ +      +++F++ P +D + W+++++   ++G Y  
Sbjct: 35  SVIKLGFESEVSVATALIGFYSDYDMG-IVWKIFNQTPIKDLVLWSAMVSACVKSGQYGE 93

Query: 113 SLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALL 172
           + E+FR M   G       +  I+  C+ +G L  G++IH   I    F     V  +L+
Sbjct: 94  AFEIFRAMQYDGVEPNHVSIVSILPACANVGALLFGKEIHGFSI-KKMFHPLTNVHNSLV 152

Query: 173 DLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRV 232
           D+Y+KC ++  ++ VF+Q++ ++ +SWT +I GCI++         F  MQ         
Sbjct: 153 DMYAKCRNFKASMLVFDQILEKDLISWTTIIRGCIENDCPREAFKAFSRMQFSCFGADET 212

Query: 233 TLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFER 292
            +  +++A  +  + + G A HG+    G      +  AL+ MY +  E L  A I+F++
Sbjct: 213 IVQDLIVAIIQADEHKFGIAFHGFLLKNGLLAFVSIGTALLQMYAKFGE-LESAIIVFDQ 271

Query: 293 TKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHG 352
              KD + WS++I  ++ S     A++ F +M+     PN +T +++L +C+       G
Sbjct: 272 LNKKDYISWSAMISVHAHSRHPYNALETFKQMQSTDERPNEITFVSLLQACSLIGAQELG 331

Query: 353 LGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFH 412
             +  +  KAG   +  + +AL+++Y K G I     IFNE+  +D V W+++I+GYG +
Sbjct: 332 ESIQAHATKAGYLSNAFLSSALIDLYCKFGRINQGRAIFNEIPTKDLVCWSSMINGYGLN 391

Query: 413 GYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEH 472
           G G+EAL+ F  M   GV+P+ +  +++LSAC+H GL  E  + F+++ ++  I   + H
Sbjct: 392 GCGDEALETFSNMLACGVKPNEVVFISVLSACSHCGLEHEGWSCFSSMEQKYGIIPKLPH 451

Query: 473 YACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACR-IHGRLEVAEMLAHQLIEA 531
           YAC VDL+ + G IE A + V+ MPM+P  RI  +L++ CR  HG +E+AE++A +LI  
Sbjct: 452 YACMVDLISRRGNIEGALQFVNKMPMEPDKRIWGALLAGCRSTHGSIEIAELVAERLIGL 511

Query: 532 EPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFS 574
           +P+N + Y +LS + +E G W   E + +++  KGL K  G+ 
Sbjct: 512 DPQNTSYYVILSNLYAEQGRWGDVERLRKLVDEKGLKKEMGYK 554



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 120/439 (27%), Positives = 214/439 (48%), Gaps = 9/439 (2%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           Y +   +++  +   G+  N   + S++ ACA       FG ++H  ++K        + 
Sbjct: 91  YGEAFEIFRA-MQYDGVEPNHVSIVSILPACANVGALL-FGKEIHGFSIKKMFHPLTNVH 148

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           NSL+ MYAK    +++  +FD++  +D ISW +II    +N     + + F  M    F 
Sbjct: 149 NSLVDMYAKCRNFKASMLVFDQILEKDLISWTTIIRGCIENDCPREAFKAFSRMQFSCFG 208

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
               ++  +I    Q  E + G   H  ++ +G     V + TALL +Y+K      A+ 
Sbjct: 209 ADETIVQDLIVAIIQADEHKFGIAFHGFLLKNGLLAF-VSIGTALLQMYAKFGELESAII 267

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VF+Q+  ++ +SW+AMIS    S++    ++ F+ MQ    +P  +T   +L AC+ +  
Sbjct: 268 VFDQLNKKDYISWSAMISVHAHSRHPYNALETFKQMQSTDERPNEITFVSLLQACSLIGA 327

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
              G++I  +A   G+  +  LS+AL+ +YC+    ++  R IF     KD+V WSS+I 
Sbjct: 328 QELGESIQAHATKAGYLSNAFLSSALIDLYCKFGR-INQGRAIFNEIPTKDLVCWSSMIN 386

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYI-MKAGLN 365
           GY  +G   EA++ FS M    ++PN V  +++LS+C+       G      +  K G+ 
Sbjct: 387 GYGLNGCGDEALETFSNMLACGVKPNEVVFISVLSACSHCGLEHEGWSCFSSMEQKYGII 446

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISG-YGFHGYGEEALQLFL 423
             +     ++++ S+ G+I  + Q  N+M    D   W  L++G    HG  E A +L  
Sbjct: 447 PKLPHYACMVDLISRRGNIEGALQFVNKMPMEPDKRIWGALLAGCRSTHGSIEIA-ELVA 505

Query: 424 EMQESGVEPDAITVLAILS 442
           E +  G++P   +   ILS
Sbjct: 506 E-RLIGLDPQNTSYYVILS 523



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 4/205 (1%)

Query: 3   SKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDAD 62
           S+H Y   L  +KQ +  +    N     S+++AC+     Q  G  +   A K+G  ++
Sbjct: 290 SRHPY-NALETFKQ-MQSTDERPNEITFVSLLQACSLIGA-QELGESIQAHATKAGYLSN 346

Query: 63  PVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL 122
             +S++LI +Y KF +      +F+E+P +D + W+S+IN +  NG    +LE F  M  
Sbjct: 347 AFLSSALIDLYCKFGRINQGRAIFNEIPTKDLVCWSSMINGYGLNGCGDEALETFSNMLA 406

Query: 123 CGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL 182
           CG      +   ++S CS  G    G    + +         +     ++DL S+  +  
Sbjct: 407 CGVKPNEVVFISVLSACSHCGLEHEGWSCFSSMEQKYGIIPKLPHYACMVDLISRRGNIE 466

Query: 183 IALRVFEQMVIRNEVS-WTAMISGC 206
            AL+   +M +  +   W A+++GC
Sbjct: 467 GALQFVNKMPMEPDKRIWGALLAGC 491


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  298 bits (762), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 174/568 (30%), Positives = 296/568 (52%), Gaps = 55/568 (9%)

Query: 13  LYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISM 72
           L  +++   G+  +  + P +IK+          G+  H   LK G  +D  + N++I M
Sbjct: 86  LMYEQMQGCGVRPDAFVYPILIKSAGTG------GIGFHAHVLKLGHGSDAFVRNAVIDM 139

Query: 73  YAKFSKPESAYQLFDEMP--YRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE 130
           YA+      A ++FDE+P   R    WN++++                            
Sbjct: 140 YARLGPIGHARKVFDEIPDYERKVADWNAMVS---------------------------- 171

Query: 131 LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQ 190
                       G  +   +  A  + D   E +V   TA++  Y+K      A R F+ 
Sbjct: 172 ------------GYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDC 219

Query: 191 MVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNG 250
           M  R+ VSW AM+SG   +   +  + LF  M   G++P   T   V+ AC+   D    
Sbjct: 220 MPERSVVSWNAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLA 279

Query: 251 KAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQ 310
            ++    +      +  +  AL+ MY +  + L  AR +F     ++VV W+S+I GY+Q
Sbjct: 280 ASLVRTLHQKRIQLNCFVRTALLDMYAKFGD-LDSARKLFNTMPGRNVVTWNSMIAGYAQ 338

Query: 311 SGDLSEAMKLFSRM-RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
           +G  + A++LF  M   +++ P+ VT+++++S+C     L  G  V  ++ +  +   +S
Sbjct: 339 NGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSIS 398

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
             NA++ MYS+CGS+  + ++F EMA RD VS+ TLISG+  HG+G EA+ L   M+E G
Sbjct: 399 GHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGG 458

Query: 430 VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
           +EPD +T + +L+AC+HAGL++E   +F ++        AI+HYAC VDLLG+ G++EDA
Sbjct: 459 IEPDRVTFIGVLTACSHAGLLEEGRKVFESIKDP-----AIDHYACMVDLLGRVGELEDA 513

Query: 490 CKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSES 549
            + +  MPM+P   +  SL++A RIH ++E+ E+ A++L E EP+N+ N+ LLS + + +
Sbjct: 514 KRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASA 573

Query: 550 GNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           G W   E +   M+  G+ K+ G+S +E
Sbjct: 574 GRWKDVERIREAMKKGGVKKTTGWSWVE 601



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 130/257 (50%), Gaps = 24/257 (9%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACA----------YAQTHQHFGLQLHCTALKS 57
           E+ L L+  E+  +G+  +     +VI AC+            +T     +QL+C     
Sbjct: 242 EEALRLF-DEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNC----- 295

Query: 58  GSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMF 117
                  +  +L+ MYAKF   +SA +LF+ MP R+ ++WNS+I  + QNG    ++E+F
Sbjct: 296 ------FVRTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELF 349

Query: 118 REMYLCGFVLKAEL-LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYS 176
           +EM     +   E+ +  +IS C  +G LELG  +    + +   +LS+    A++ +YS
Sbjct: 350 KEMITAKKLTPDEVTMVSVISACGHLGALELGNWV-VRFLTENQIKLSISGHNAMIFMYS 408

Query: 177 KCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTI 236
           +C     A RVF++M  R+ VS+  +ISG     +    I+L   M+  G++P RVT   
Sbjct: 409 RCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIG 468

Query: 237 VLLACAELRDLRNGKAI 253
           VL AC+    L  G+ +
Sbjct: 469 VLTACSHAGLLEEGRKV 485



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 101/462 (21%), Positives = 185/462 (40%), Gaps = 105/462 (22%)

Query: 155 VIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDT 214
           ++ + +   +VFV T++L  YS        + ++EQM             GC        
Sbjct: 55  LLFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMYEQM------------QGC-------- 94

Query: 215 GIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMH 274
                      GV+P      I++ +         G   H +    G   D  +  A++ 
Sbjct: 95  -----------GVRPDAFVYPILIKSAGT-----GGIGFHAHVLKLGHGSDAFVRNAVID 138

Query: 275 MYCECTEALHPARII-----FER------------------------------------- 292
           MY       H  ++      +ER                                     
Sbjct: 139 MYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWT 198

Query: 293 ------TKVKDV---------------VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP 331
                  KVKD+               V W++++ GY+Q+G   EA++LF  M    IEP
Sbjct: 199 AMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMVNAGIEP 258

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIF 391
           +  T + ++S+C+ +        +   + +  +  +  +  AL++MY+K G + S+ ++F
Sbjct: 259 DETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLDMYAKFGDLDSARKLF 318

Query: 392 NEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM-QESGVEPDAITVLAILSACNHAGLV 450
           N M  R+ V+W ++I+GY  +G    A++LF EM     + PD +T+++++SAC H G +
Sbjct: 319 NTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGAL 378

Query: 451 KEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVS 510
            E        + E +I L+I  +   + +  + G +EDA +V   M  +      ++L+S
Sbjct: 379 -ELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVS-YNTLIS 436

Query: 511 ACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLSMVCSESG 550
               HG    A  L   + E   EP+      +L+  CS +G
Sbjct: 437 GFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLT-ACSHAG 477



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 81/360 (22%), Positives = 160/360 (44%), Gaps = 79/360 (21%)

Query: 266 HHLSAALMHMYCECTEAL-HPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM 324
           H+   AL+  +C    A  H   ++F  T   +V +++S++R YS   D ++ + ++ +M
Sbjct: 32  HNYWVALLINHCTRLRAPPHYTHLLFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMYEQM 91

Query: 325 RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSI 384
           +   + P++     ++ S       + G+G H +++K G   D  + NA+++MY++ G I
Sbjct: 92  QGCGVRPDAFVYPILIKSAG-----TGGIGFHAHVLKLGHGSDAFVRNAVIDMYARLGPI 146

Query: 385 TSSHQIFNE---------------------------------MAARDFVSWTTLI----- 406
             + ++F+E                                 M  R+ ++WT ++     
Sbjct: 147 GHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAK 206

Query: 407 --------------------------SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
                                     SGY  +G  EEAL+LF EM  +G+EPD  T + +
Sbjct: 207 VKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTV 266

Query: 441 LSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKP 500
           +SAC+  G    A +L    + +K+I L        +D+  K G ++ A K+ +TMP + 
Sbjct: 267 ISACSSRGDPCLAASLV-RTLHQKRIQLNCFVRTALLDMYAKFGDLDSARKLFNTMPGR- 324

Query: 501 STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCS-------ESGNWL 553
           +    +S+++    +G+  +A  L  ++I A+       T++S++ +       E GNW+
Sbjct: 325 NVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWV 384


>gi|147799187|emb|CAN74829.1| hypothetical protein VITISV_002140 [Vitis vinifera]
          Length = 542

 Score =  298 bits (762), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 173/494 (35%), Positives = 270/494 (54%), Gaps = 7/494 (1%)

Query: 89  MPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG-FVLKAELLAGIISLCSQIGELEL 147
           MP +DTISWNS I+    NG       +F+++Y  G +      L  +++ C +     +
Sbjct: 1   MPMKDTISWNSRISGLLGNGDIEMGFRVFKQLYESGIYQFDQATLTTVLTACDKPEFCYV 60

Query: 148 GRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCI 207
            + IH+LV + G +E  + V  AL+  Y +C       RVF++M  +N V+WTA+ISG  
Sbjct: 61  SKMIHSLVFLYG-YEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVISGLS 119

Query: 208 DSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
             Q Y+  + LF  M+   V P  +T    L+AC+ L+ +R G+ IHG  +  G  FD  
Sbjct: 120 QGQFYEESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQAIREGRQIHGLVWKLGVHFDLC 179

Query: 268 LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
           + +ALM MY +C  +L  A  IFE  +  D V  + I+ G +Q+G   E++++F +M   
Sbjct: 180 IESALMDMYSKCG-SLEDAWKIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKN 238

Query: 328 R--IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSIT 385
              I+PN ++  AIL      + L+ G  +H  I+K     +  + N L+NMYSKCG + 
Sbjct: 239 GVVIDPNMIS--AILGVFGIDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCGDLD 296

Query: 386 SSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
            S +IF  M  R+ VSW ++I+ +  HG G  ALQL+ EM+  GV P  +T L++L AC 
Sbjct: 297 DSIKIFCWMPQRNSVSWNSMIAAFARHGNGSRALQLYEEMRLEGVWPTDVTFLSLLHACA 356

Query: 446 HAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRIL 505
           H GLV++      ++ K+  I   +EHYAC VD++G++G + +A K +  +P KP   + 
Sbjct: 357 HVGLVEKGMGFLESMAKDYGIGPRMEHYACVVDMMGRAGLLNEAKKFIERLPEKPGILVW 416

Query: 506 SSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAK 565
            +L+ AC IHG  E+ +  A+QL    PE+ A Y LL+ + S  G W       + M+  
Sbjct: 417 QALLGACSIHGNSEMGKYAANQLFLQAPESPAPYILLANIYSSEGKWKERARTIKKMKDM 476

Query: 566 GLSKSYGFSRIENE 579
           G++K  G S IE E
Sbjct: 477 GVTKETGISWIEIE 490



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 114/433 (26%), Positives = 203/433 (46%), Gaps = 21/433 (4%)

Query: 8   EQTLHLYKQELHPSGLYS-NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           E    ++KQ L+ SG+Y  + A L +V+ AC   +   +    +H      G + +  + 
Sbjct: 23  EMGFRVFKQ-LYESGIYQFDQATLTTVLTACDKPE-FCYVSKMIHSLVFLYGYEREITVG 80

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           N+LI+ Y +     S  ++FDEM  ++ ++W ++I+  +Q  FY  SL++F +M      
Sbjct: 81  NALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVISGLSQGQFYEESLKLFGKMRDGPVD 140

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
             +      +  CS +  +  GRQIH LV   G     + + +AL+D+YSKC     A +
Sbjct: 141 PNSLTYLSSLMACSGLQAIREGRQIHGLVWKLG-VHFDLCIESALMDMYSKCGSLEDAWK 199

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           +FE     +EVS T ++ G   +   +  I +F  M + GV      ++ +L        
Sbjct: 200 IFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNGVVIDPNMISAILGVFGIDTS 259

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L  GK IH       F  ++ ++  L++MY +C + L  +  IF     ++ V W+S+I 
Sbjct: 260 LALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCGD-LDDSIKIFCWMPQRNSVSWNSMIA 318

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
            +++ G+ S A++L+  MRLE + P  VT L++L +C     +  G+G    + K     
Sbjct: 319 AFARHGNGSRALQLYEEMRLEGVWPTDVTFLSLLHACAHVGLVEKGMGFLESMAK----- 373

Query: 367 DVSIGNAL------MNMYSKCGSITSSHQIFNEMAARD-FVSWTTLISGYGFHGYGE--- 416
           D  IG  +      ++M  + G +  + +    +  +   + W  L+     HG  E   
Sbjct: 374 DYGIGPRMEHYACVVDMMGRAGLLNEAKKFIERLPEKPGILVWQALLGACSIHGNSEMGK 433

Query: 417 -EALQLFLEMQES 428
             A QLFL+  ES
Sbjct: 434 YAANQLFLQAPES 446



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 165/345 (47%), Gaps = 15/345 (4%)

Query: 5   HFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPV 64
            FYE++L L+ + +    +  N+    S + AC+  Q  +  G Q+H    K G   D  
Sbjct: 122 QFYEESLKLFGK-MRDGPVDPNSLTYLSSLMACSGLQAIRE-GRQIHGLVWKLGVHFDLC 179

Query: 65  ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG 124
           I ++L+ MY+K    E A+++F+     D +S   I+    QNGF   S+++F +M   G
Sbjct: 180 IESALMDMYSKCGSLEDAWKIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNG 239

Query: 125 FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
            V+   +++ I+ +      L LG+QIH+L I+  SF  + FV+  L+++YSKC     +
Sbjct: 240 VVIDPNMISAILGVFGIDTSLALGKQIHSL-IIKKSFGSNYFVNNGLINMYSKCGDLDDS 298

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
           +++F  M  RN VSW +MI+      N    + L+  M+ EGV PT VT   +L ACA +
Sbjct: 299 IKIFCWMPQRNSVSWNSMIAAFARHGNGSRALQLYEEMRLEGVWPTDVTFLSLLHACAHV 358

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCEC-----TEALHPARIIFERTKVKD-V 298
                G    G  +      D+ +   + H  C          L+ A+   ER   K  +
Sbjct: 359 -----GLVEKGMGFLESMAKDYGIGPRMEHYACVVDMMGRAGLLNEAKKFIERLPEKPGI 413

Query: 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE-PNSVTLLAILSS 342
           ++W +++   S  G+        +++ L+  E P    LLA + S
Sbjct: 414 LVWQALLGACSIHGNSEMGKYAANQLFLQAPESPAPYILLANIYS 458


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  298 bits (762), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 177/521 (33%), Positives = 275/521 (52%), Gaps = 14/521 (2%)

Query: 65  ISNSLISMYAKFSKPESAYQLFDEMP----YRDTISWNSIINCFTQNGFYVRSLEMFREM 120
           I N+LI  ++    P S+  LF +M     Y ++ ++ S+     ++     + ++    
Sbjct: 94  IWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLHAHA 153

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
                 L   +   +I + SQ+GEL      HA ++ D S        TAL+  Y    H
Sbjct: 154 LKLALHLHPHVHTSLIHMYSQVGELR-----HARLVFDKSTLRDAVSFTALITGYVSEGH 208

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
              A R+F+++  ++ VSW AMI+G + S  ++  +  F  MQ   V P + T+  VL A
Sbjct: 209 VDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSA 268

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
           C  LR L  GK I  +    GF  +  L  AL+ MY +C E +  AR +F+  + KDV++
Sbjct: 269 CGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGE-IGTARKLFDGMEDKDVIL 327

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           W+++I GY       EA+ LF  M  E + PN VT LA+L +C     L  G  VH YI 
Sbjct: 328 WNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYID 387

Query: 361 K----AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGE 416
           K     G   +VS+  +++ MY+KCG +  + Q+F  M +R   SW  +ISG   +G+ E
Sbjct: 388 KNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAE 447

Query: 417 EALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACY 476
            AL LF EM   G +PD IT + +LSAC  AG V+     F+++ K+  I+  ++HY C 
Sbjct: 448 RALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCM 507

Query: 477 VDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENA 536
           +DLL +SGK ++A  ++  M M+P   I  SL++ACRIHG++E  E +A +L E EPEN+
Sbjct: 508 IDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIHGQVEFGEYVAERLFELEPENS 567

Query: 537 ANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
             Y LLS + + +G W    ++   +  KG+ K  G + IE
Sbjct: 568 GAYVLLSNIYAGAGRWDDVAKIRTKLNDKGMKKVPGCTSIE 608


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  298 bits (762), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 181/563 (32%), Positives = 300/563 (53%), Gaps = 16/563 (2%)

Query: 27  TAILPSVIKAC-----AYAQTHQHFGLQLHCTALKSGS-DADPVISNSLISMYAKFSKP- 79
           TA LP+   A      A  +T   +  QLH   +KSG     P   +SL+   A  + P 
Sbjct: 7   TAALPTPAGAGPAPPHAPLRTDPRYLPQLHAALIKSGELTGSPKCFHSLLE--AAAASPT 64

Query: 80  --ESAYQLF--DEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE-LLAG 134
               A  LF     P   T  +N ++      G    +L +F EM     V   +  +A 
Sbjct: 65  LLPYAVSLFRLGPRPPLSTPCYNVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVAC 124

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
            +  CS++  L++GR I A  +  G      FV ++L+ +Y+ C     A  +F+ +   
Sbjct: 125 ALKSCSRMCTLDVGRGIQAYAVKRG-LMADRFVLSSLIHMYASCRDVAAAQLLFDAVEEN 183

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
             V W A+I+  + + N+   +++F+ M   GV    +TL  V+ AC  + D + GK + 
Sbjct: 184 GVVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVA 243

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
            Y    G   + +L  AL+ MY +C E L  AR +F+  + +DVV WS++I GY+Q+   
Sbjct: 244 EYVDEKGLVRNRNLMTALIDMYAKCGE-LGKARRLFDGMQSRDVVAWSAMISGYTQADQC 302

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
            EA+ LFS M+L  +EPN VT++++LS+C     L  G  VH YI +  L+  + +G AL
Sbjct: 303 REALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTAL 362

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           ++ Y+KCG I  + + F  M  ++  +WT LI G   +G G EAL+LF  M+++ +EP  
Sbjct: 363 VDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMRKASIEPTD 422

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS 494
           +T + +L AC+H+ LV+E    F+++ ++  I    EHY C VDLLG++G I++A + + 
Sbjct: 423 VTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIR 482

Query: 495 TMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLG 554
           TMP++P+  I  +L+S+C +H  +E+ E    Q++   P ++ +Y LLS + +  G W  
Sbjct: 483 TMPIEPNAVIWRALLSSCAVHKNVEIGEEALKQIVSLNPSHSGDYILLSNIYASVGQWKN 542

Query: 555 AEEVWRVMRAKGLSKSYGFSRIE 577
           A  + + M+ +G+ K+ G S IE
Sbjct: 543 AAMIRKEMKDRGIEKTPGCSLIE 565



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 126/426 (29%), Positives = 202/426 (47%), Gaps = 8/426 (1%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E  LHL+ + L  + +  +   +   +K+C+   T    G  +   A+K G  AD  + +
Sbjct: 100 EDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLD-VGRGIQAYAVKRGLMADRFVLS 158

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           SLI MYA      +A  LFD +     + WN+II  + +NG ++  +EMF+ M   G   
Sbjct: 159 SLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAF 218

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
               L  +++ C +IG+ +LG+ +   V   G    +  + TAL+D+Y+KC     A R+
Sbjct: 219 DEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVR-NRNLMTALIDMYAKCGELGKARRL 277

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F+ M  R+ V+W+AMISG   +      + LF  MQ   V+P  VT+  VL ACA L  L
Sbjct: 278 FDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGAL 337

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
             GK +H Y           L  AL+  Y +C   +  A   FE   VK+   W+++I+G
Sbjct: 338 ETGKWVHSYIRRKRLSLTIILGTALVDFYAKCG-CIDDAVEAFESMPVKNSWTWTALIKG 396

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG-VHCYIMKAGLNF 366
            + +G   EA++LFS MR   IEP  VT + +L +C+    +  G           G+  
Sbjct: 397 MATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIKP 456

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFHG---YGEEALQLF 422
                  ++++  + G I  ++Q    M    + V W  L+S    H     GEEAL+  
Sbjct: 457 RAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKNVEIGEEALKQI 516

Query: 423 LEMQES 428
           + +  S
Sbjct: 517 VSLNPS 522


>gi|414887787|tpg|DAA63801.1| TPA: hypothetical protein ZEAMMB73_367984 [Zea mays]
          Length = 711

 Score =  297 bits (761), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 173/579 (29%), Positives = 308/579 (53%), Gaps = 5/579 (0%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACA-YAQTHQHFGLQLHC-TALKSG 58
           +V    + + L  Y   +    + ++    P V+KACA   +  Q   +Q +  T +  G
Sbjct: 135 LVDAGRFSEALRWYWDMVRDGSVVADRFTYPPVLKACAALGEVEQGRKVQENVETDIARG 194

Query: 59  -SDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMF 117
            +  +  +  +L+ M+AK      A  +F+ M  RD  SW ++I    + G ++  + + 
Sbjct: 195 IAKGNVFVQCALVDMFAKCGCLGEARNMFESMGVRDLASWTAMIGGAVRGGDWLEVMTLL 254

Query: 118 REMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSK 177
           + M   GF   + + A +I  C ++ EL  G  +H   +  G  +  + V  AL+D+Y K
Sbjct: 255 KRMKSEGFRPDSMIFATVIPACGKVKELRTGMALHGYAVKCGVGD-DICVPNALVDMYCK 313

Query: 178 CHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIV 237
           C    +A  +F  +  ++  SW+ +I+G   ++ Y+  + LF  M   G+KP   T+  +
Sbjct: 314 CARLDMAASLFWSIDHKDVFSWSTIIAGHSQNRIYNVSVSLFTEMVASGIKPNSTTIASI 373

Query: 238 LLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKD 297
           L + +ELR LR GK IH ++     +    L++AL+  YC     +  A+I+FE     D
Sbjct: 374 LPSISELRLLRYGKEIHCFSLRNRLEHSEFLASALIDFYCR-QGYIRDAQIVFEFKPKND 432

Query: 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHC 357
           +V+ +S+IRGY  + D   A++L   +  E + P+ VT++++L  C + S L  G  +H 
Sbjct: 433 LVVLNSMIRGYVVNKDSESALRLLRALLKEGLRPDHVTVVSVLPLCNQPSRLLQGKELHA 492

Query: 358 YIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEE 417
           Y ++  ++   S+ NAL +MY KCG +  +++IF  M  R+ V++ TLIS  G HG+ ++
Sbjct: 493 YAIRHNISSCFSVTNALTDMYCKCGCLEIANKIFLLMTERNTVTYNTLISSLGKHGHADQ 552

Query: 418 ALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYV 477
           A  LF  M+  GV PD +T +A+LS C+H GL+ +    +++++++  I    EHY+C V
Sbjct: 553 AFILFDLMKRDGVSPDKVTFVALLSCCSHGGLIDKGLCFYDSMLRDYNIPPDKEHYSCIV 612

Query: 478 DLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAA 537
           DL  +SGK++DA   ++ +   P   +L  L+SACR H R+++AE++A ++ E  P +  
Sbjct: 613 DLYSRSGKLDDAWSFIANLQEVPEIDVLGCLLSACRDHHRMDIAELVAERIFEQNPNDPG 672

Query: 538 NYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
            + LLS V + +G W     +  ++  + L K  G S I
Sbjct: 673 YHILLSNVYASAGMWSEVTRIRTMIEERSLKKRTGNSLI 711



 Score =  222 bits (565), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 151/510 (29%), Positives = 255/510 (50%), Gaps = 12/510 (2%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPE--SAYQLFDEMPYRDTISWNSIINCFTQ 106
           +LH   L  G     V++  L+  YA+        A ++FD MP R++ +WN++I     
Sbjct: 78  RLHAALLVRGYHRSTVLAAQLVRAYARMRDGGLGHAVRVFDGMPTRNSFAWNAVIKGLVD 137

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELL-AGIISLCSQIGELELGRQIHALVIVD---GSFE 162
            G +  +L  + +M   G V+        ++  C+ +GE+E GR++   V  D   G  +
Sbjct: 138 AGRFSEALRWYWDMVRDGSVVADRFTYPPVLKACAALGEVEQGRKVQENVETDIARGIAK 197

Query: 163 LSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM 222
            +VFV  AL+D+++KC     A  +FE M +R+  SWTAMI G +   ++   + L + M
Sbjct: 198 GNVFVQCALVDMFAKCGCLGEARNMFESMGVRDLASWTAMIGGAVRGGDWLEVMTLLKRM 257

Query: 223 QREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEA 282
           + EG +P  +    V+ AC ++++LR G A+HGYA  CG   D  +  AL+ MYC+C   
Sbjct: 258 KSEGFRPDSMIFATVIPACGKVKELRTGMALHGYAVKCGVGDDICVPNALVDMYCKCAR- 316

Query: 283 LHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSS 342
           L  A  +F     KDV  WS+II G+SQ+   + ++ LF+ M    I+PNS T+ +IL S
Sbjct: 317 LDMAASLFWSIDHKDVFSWSTIIAGHSQNRIYNVSVSLFTEMVASGIKPNSTTIASILPS 376

Query: 343 CTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSW 402
            +    L +G  +HC+ ++  L     + +AL++ Y + G I  +  +F      D V  
Sbjct: 377 ISELRLLRYGKEIHCFSLRNRLEHSEFLASALIDFYCRQGYIRDAQIVFEFKPKNDLVVL 436

Query: 403 TTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462
            ++I GY  +   E AL+L   + + G+ PD +TV+++L  CN    + + + L    ++
Sbjct: 437 NSMIRGYVVNKDSESALRLLRALLKEGLRPDHVTVVSVLPLCNQPSRLLQGKELHAYAIR 496

Query: 463 EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAE 522
              I+          D+  K G +E A K+   M  + +T   ++L+S+   HG  + A 
Sbjct: 497 H-NISSCFSVTNALTDMYCKCGCLEIANKIFLLMTER-NTVTYNTLISSLGKHGHADQAF 554

Query: 523 MLAHQLIE--AEPENAANYTLLSMVCSESG 550
           +L   +      P+      LLS  CS  G
Sbjct: 555 ILFDLMKRDGVSPDKVTFVALLS-CCSHGG 583



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 106/378 (28%), Positives = 193/378 (51%), Gaps = 31/378 (8%)

Query: 149 RQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI--ALRVFEQMVIRNEVSWTAMISGC 206
           R++HA ++V G +  S  ++  L+  Y++     +  A+RVF+ M  RN  +W A+I G 
Sbjct: 77  RRLHAALLVRG-YHRSTVLAAQLVRAYARMRDGGLGHAVRVFDGMPTRNSFAWNAVIKGL 135

Query: 207 IDSQNYDTGIDLFRAMQREG-VKPTRVTLTIVLLACAELRDLRNGKAIH---------GY 256
           +D+  +   +  +  M R+G V   R T   VL ACA L ++  G+ +          G 
Sbjct: 136 VDAGRFSEALRWYWDMVRDGSVVADRFTYPPVLKACAALGEVEQGRKVQENVETDIARGI 195

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
           A    F     +  AL+ M+ +C   L  AR +FE   V+D+  W+++I G  + GD  E
Sbjct: 196 AKGNVF-----VQCALVDMFAKCG-CLGEARNMFESMGVRDLASWTAMIGGAVRGGDWLE 249

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
            M L  RM+ E   P+S+    ++ +C +   L  G+ +H Y +K G+  D+ + NAL++
Sbjct: 250 VMTLLKRMKSEGFRPDSMIFATVIPACGKVKELRTGMALHGYAVKCGVGDDICVPNALVD 309

Query: 377 MYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAIT 436
           MY KC  +  +  +F  +  +D  SW+T+I+G+  +     ++ LF EM  SG++P++ T
Sbjct: 310 MYCKCARLDMAASLFWSIDHKDVFSWSTIIAGHSQNRIYNVSVSLFTEMVASGIKPNSTT 369

Query: 437 VLAILSACNHAGLVKEAE-----TLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACK 491
           + +IL + +   L++  +     +L N +   + +A A+  + C      + G I DA +
Sbjct: 370 IASILPSISELRLLRYGKEIHCFSLRNRLEHSEFLASALIDFYC------RQGYIRDA-Q 422

Query: 492 VVSTMPMKPSTRILSSLV 509
           +V     K    +L+S++
Sbjct: 423 IVFEFKPKNDLVVLNSMI 440


>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  297 bits (761), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 172/528 (32%), Positives = 287/528 (54%), Gaps = 50/528 (9%)

Query: 63  PVISNSLISMYAKFSKPESAYQLFD----------EMPYRDTISWNSIINCFTQNGFYVR 112
           P     LI +Y+K     SA  LFD          + P  ++   N+++  +   G    
Sbjct: 58  PHFLARLIILYSKLGDLHSARTLFDHRHHHHHGHTQAP--NSFLCNTMLRAYANAGRSYE 115

Query: 113 SLEMFREMYLCGFVLKAELLAGIISLC-SQIGELELGRQIHALVIVDGSFELSVFVSTAL 171
           +++++  M   G  +       ++ +C S++G +  G  +H  V+  G F   +FV  AL
Sbjct: 116 AIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAV-FGEVVHGQVVRTG-FGSDLFVEAAL 173

Query: 172 LDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTR 231
           +D+Y+KC     A  VF++M+IR+ V WTAMI+    ++     + LFR MQ EG     
Sbjct: 174 VDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDE 233

Query: 232 VTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFE 291
           +T   V  A  +L D R                                 A+  AR++F+
Sbjct: 234 ITAISVASAVGQLGDGR--------------------------------MAISRARLVFD 261

Query: 292 RTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSH 351
           R + ++ + W+S++ GY+Q+G  ++A+ LF++M+    +PN VT L ++S+C+       
Sbjct: 262 RMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHL 321

Query: 352 GLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFN--EMAARDFVSWTTLISGY 409
           G  +H +++ + ++ D ++ NA+M+MY KCG + ++ ++FN  E+  RD  SW  LISGY
Sbjct: 322 GRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGY 381

Query: 410 GFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA 469
           G HG+G+EAL+LF  MQ  GVEP+ IT  +ILSAC+HAGL+ E    F + M +  +   
Sbjct: 382 GVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFAD-MTKLSVRPE 440

Query: 470 IEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLI 529
           ++HYAC VD+LG++G + +A +++  +P +PS  +  +L+ ACRIHG  E+ E+ A+ L 
Sbjct: 441 MKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLF 500

Query: 530 EAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           + EPE+   Y L+S + + S  W   E V + M+++GL K   FS IE
Sbjct: 501 QLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIE 548



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 117/410 (28%), Positives = 199/410 (48%), Gaps = 42/410 (10%)

Query: 11  LHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLI 70
           L++Y Q +   G+  N    P V+K CA ++    FG  +H   +++G  +D  +  +L+
Sbjct: 119 LYIYMQRM---GVGVNNFTYPFVLKVCA-SELGAVFGEVVHGQVVRTGFGSDLFVEAALV 174

Query: 71  SMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE 130
            MYAK  +   A+++FD M  RD + W ++I  + Q    +++L +FR+M   GF L  E
Sbjct: 175 DMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGF-LGDE 233

Query: 131 LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQ 190
           + A  IS+ S +G+L  GR               + +S A L              VF++
Sbjct: 234 ITA--ISVASAVGQLGDGR---------------MAISRARL--------------VFDR 262

Query: 191 MVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNG 250
           M  RN +SW +M+SG   +      + LF  MQ     P  VT  I++ AC+ L     G
Sbjct: 263 MEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLG 322

Query: 251 KAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV--KDVVIWSSIIRGY 308
           + +H +      D D  L  A+M MY +C + L  A  +F   ++  +DV  W+ +I GY
Sbjct: 323 RKLHNFVISSKMDIDTTLRNAIMDMYMKCGD-LDTAVEMFNNCELGERDVSSWNVLISGY 381

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
              G   EA++LFSRM++E +EPN +T  +ILS+C+    +  G      + K  +  ++
Sbjct: 382 GVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTKLSVRPEM 441

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAAR--DFVSWTTLISGYGFHGYGE 416
                +++M  + G +  + ++  ++ +R  D V W  L+     HG  E
Sbjct: 442 KHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEV-WGALLLACRIHGNTE 490


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  297 bits (761), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 170/548 (31%), Positives = 298/548 (54%), Gaps = 10/548 (1%)

Query: 33  VIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES---AYQLFDEM 89
           +++ C   +  Q    Q+H   LK+    DP+I+ +++   A    P++   A  +F+ +
Sbjct: 27  ILQQCKTPKDLQ----QVHAHLLKTRRLLDPIITEAVLE-SAALLLPDTIDYALSIFNHI 81

Query: 90  PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGR 149
              ++ ++N +I           +L +F++M+           + ++  CS++  L  G 
Sbjct: 82  DKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGE 141

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
           Q+HAL++  G F+ + FV   L+ +Y+ C    +A  VF+ M  R+ V+W +M+SG   +
Sbjct: 142 QVHALILKSG-FKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKN 200

Query: 210 QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS 269
             +D  + LFR +    ++   VT+  VL+AC  L +L  G+ I  Y    G   ++ L+
Sbjct: 201 GLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLT 260

Query: 270 AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
            +L+ MY +C + +  AR +F+    +DVV WS++I GY+Q+    EA+ LF  M+   +
Sbjct: 261 TSLIDMYAKCGQ-VDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNV 319

Query: 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
            PN VT++++L SC        G  VH YI K  +   V++G  L++ Y+KCG I  S +
Sbjct: 320 YPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVE 379

Query: 390 IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL 449
           +F EM+ ++  +WT LI G   +G G+ AL+ F  M E+ V+P+ +T + +LSAC+HA L
Sbjct: 380 VFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACL 439

Query: 450 VKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLV 509
           V +   LFN++ ++  I   IEHY C VD+LG++G +E+A + +  MP  P+  +  +L+
Sbjct: 440 VDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLL 499

Query: 510 SACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSK 569
           ++CR H  +E+AE     +   EP ++ +Y LLS   +  G    A  V  +++ K + K
Sbjct: 500 ASCRAHKNIEMAEKSLEHITRLEPAHSGDYILLSNTYALVGRVEDAIRVRSLIKEKEIKK 559

Query: 570 SYGFSRIE 577
             G S IE
Sbjct: 560 IPGCSLIE 567



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 131/507 (25%), Positives = 235/507 (46%), Gaps = 59/507 (11%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           +  L L+K+ +H   +  +     SV+KAC+  +  +  G Q+H   LKSG  ++  + N
Sbjct: 103 DNALLLFKK-MHEKSVQHDKFTFSSVLKACSRMKALRE-GEQVHALILKSGFKSNEFVEN 160

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +LI MYA   +   A  +FD MP R  ++WNS+++ +T+NG +   +++FR++       
Sbjct: 161 TLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEF 220

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
               +  ++  C ++  LE+G  I   ++  G    +  ++T+L+D+Y+KC     A ++
Sbjct: 221 DDVTMISVLMACGRLANLEIGELIGEYIVSKG-LRRNNTLTTSLIDMYAKCGQVDTARKL 279

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F++M  R+ V+W+AMISG   +      ++LF  MQ+  V P  VT+  VL +CA L   
Sbjct: 280 FDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAY 339

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
             GK +H Y           L   L+  Y +C   +  +  +F+    K+V  W+++I+G
Sbjct: 340 ETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCG-YIDRSVEVFKEMSFKNVFTWTALIQG 398

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
            + +G+   A++ FS M    ++PN VT + +LS+C+    +  G               
Sbjct: 399 LANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQG--------------- 443

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDF------VSWTTLISGYGFHGYGEEALQL 421
                                 +FN M  RDF        +  ++   G  G+ EEA Q 
Sbjct: 444 --------------------RHLFNSM-RRDFDIEPRIEHYGCMVDILGRAGFLEEAYQF 482

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
              M      P+A+    +L++C     ++ AE    ++ +     L   H   Y+ LL 
Sbjct: 483 IDNMP---FPPNAVVWRTLLASCRAHKNIEMAEKSLEHITR-----LEPAHSGDYI-LLS 533

Query: 482 KS----GKIEDACKVVSTMPMKPSTRI 504
            +    G++EDA +V S +  K   +I
Sbjct: 534 NTYALVGRVEDAIRVRSLIKEKEIKKI 560


>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 683

 Score =  297 bits (761), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 179/593 (30%), Positives = 306/593 (51%), Gaps = 44/593 (7%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           +GL   + I  S +K+C  + TH     Q+H    + G   D V  N L++         
Sbjct: 33  TGLSQQSCI--SYLKSCK-SMTHLK---QIHAQIFRVGLHQDIVSLNKLMAFCTDPFNGN 86

Query: 81  SAY--QLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISL 138
             Y  ++F  + Y   + +N II  F + G Y R+L +F ++   G          +   
Sbjct: 87  LNYAEKMFKYIRYPCLLIYNLIIKAFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVFKA 146

Query: 139 CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
              +GE+    ++  LV   G  E   +V  +L+D+Y++     +   +F++M  R+ +S
Sbjct: 147 IGYLGEVSKAEKLRGLVTKTG-LEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVIS 205

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQRE-GVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
           W  MISG +  + ++  I++F  MQ E G+ P   T+   L AC  L+ L  GK IH Y 
Sbjct: 206 WNVMISGYVKCRRFEDAINVFCRMQEESGLMPDEATVVSTLSACTALKRLELGKKIHHYV 265

Query: 258 YCCGFDFDHHLSAALMHMYCECT------------------------------EALHPAR 287
                 F   +  AL+ MYC+C                                 L  AR
Sbjct: 266 RD-NVKFTPIIGNALLDMYCKCGCLSIARAVFEEMPSKNVICWTTMVSGYANCGELEEAR 324

Query: 288 IIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQS 347
            +FE + ++DVVIW+++I GY Q     EA+ LF  M++ +++P+   ++++L+ C +  
Sbjct: 325 ELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTG 384

Query: 348 FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLIS 407
            +  G  +H +I +  +  D  +G AL+ MY+KCG I  + +IF  +  +D  SWT++I 
Sbjct: 385 AIEQGKWIHEFIDENRIPIDAVVGTALIEMYAKCGFIEKALEIFYGLRVKDTASWTSIIC 444

Query: 408 GYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIA 467
           G   +G   +AL+LF +M+++GV PD IT + +LSAC+H GLV+E    FN++  E +I 
Sbjct: 445 GLAMNGKTSKALELFSKMKQAGVRPDDITFIGVLSACSHGGLVEEGRKFFNSMRMEYQIK 504

Query: 468 LAIEHYACYVDLLGKSGKIEDACKVVSTMPMKP---STRILSSLVSACRIHGRLEVAEML 524
             +EHY C VDLLG++G + +A +++  +P +    +  +  SL+SACRI+G +E+ E +
Sbjct: 505 PKVEHYGCLVDLLGRAGLLNEAEELIKKIPDENKAITVPLYGSLLSACRIYGNVEMGERV 564

Query: 525 AHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           A QL++ E  +++ +TLL+ + + +  W    +V R M+  G+ K+ G S IE
Sbjct: 565 AKQLVKFESSDSSVHTLLANIYAFADRWEDVTKVRRKMKDLGVKKTPGCSSIE 617



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 124/267 (46%), Gaps = 34/267 (12%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           +E  ++++ +    SGL  + A + S + AC  A      G ++H   ++      P+I 
Sbjct: 219 FEDAINVFCRMQEESGLMPDEATVVSTLSACT-ALKRLELGKKIH-HYVRDNVKFTPIIG 276

Query: 67  NSLISMYAK-------------------------------FSKPESAYQLFDEMPYRDTI 95
           N+L+ MY K                                 + E A +LF+  P RD +
Sbjct: 277 NALLDMYCKCGCLSIARAVFEEMPSKNVICWTTMVSGYANCGELEEARELFEGSPIRDVV 336

Query: 96  SWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALV 155
            W ++IN + Q   +  ++ +FREM +        ++  +++ C+Q G +E G+ IH   
Sbjct: 337 IWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQGKWIHEF- 395

Query: 156 IVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTG 215
           I +    +   V TAL+++Y+KC     AL +F  + +++  SWT++I G   +      
Sbjct: 396 IDENRIPIDAVVGTALIEMYAKCGFIEKALEIFYGLRVKDTASWTSIICGLAMNGKTSKA 455

Query: 216 IDLFRAMQREGVKPTRVTLTIVLLACA 242
           ++LF  M++ GV+P  +T   VL AC+
Sbjct: 456 LELFSKMKQAGVRPDDITFIGVLSACS 482


>gi|356498879|ref|XP_003518275.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 754

 Score =  297 bits (761), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 164/538 (30%), Positives = 289/538 (53%), Gaps = 13/538 (2%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           +H   +K+G   +  + + L+++YAK    E A ++F+ MP R+ ++W +++  F QN  
Sbjct: 86  VHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFENMPRRNVVAWTTLMVGFVQNSQ 145

Query: 110 YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVST 169
              ++ +F+EM   G       L+ ++  CS +  L+LG Q HA +I     +    V +
Sbjct: 146 PKHAIHVFQEMLYAGSYPSIYTLSAVLHACSSLQSLKLGDQFHAYII-KYHLDFDTSVGS 204

Query: 170 ALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKP 229
           AL  LYSKC     AL+ F ++  +N +SWT+ +S C D+     G+ LF  M  E +KP
Sbjct: 205 ALCSLYSKCGRLEDALKAFSRIREKNVISWTSAVSACGDNGAPVKGLRLFVEMISEDIKP 264

Query: 230 TRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARII 289
              TLT  L  C E+  L  G  +       G++ +  +  +L+++Y +    +   R  
Sbjct: 265 NEFTLTSALSQCCEIPSLELGTQVCSLCIKFGYESNLRVRNSLLYLYLKSGFIVEAHRF- 323

Query: 290 FERTKVKDVVIWSSIIRGYSQSGDL-----------SEAMKLFSRMRLERIEPNSVTLLA 338
           F R     +V W+++I G++Q  +L           SEA+K+FS++    ++P+  TL +
Sbjct: 324 FNRMDDVSMVTWNAMIAGHAQMMELTKDNLSACQRGSEALKIFSKLNQSGMKPDLFTLSS 383

Query: 339 ILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARD 398
           +LS C+R   +  G  +H   +K G   DV +  +L++MY+KCGSI  + + F EM+ R 
Sbjct: 384 VLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYNKCGSIERASKAFLEMSTRT 443

Query: 399 FVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFN 458
            ++WT++I+G+  HG  ++AL +F +M  +GV P+ +T + +LSAC+HAG+V +A   F 
Sbjct: 444 MIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRPNTVTFVGVLSACSHAGMVSQALNYFE 503

Query: 459 NVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRL 518
            + K+ KI   ++HY C VD+  + G++E A   +  M  +PS  I S+ ++ CR HG L
Sbjct: 504 IMQKKYKIKPVMDHYECMVDMFVRLGRLEQALNFIKKMNYEPSEFIWSNFIAGCRSHGNL 563

Query: 519 EVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
           E+    + QL+  +P++   Y LL  +   +  +     V ++M  + + K   +S I
Sbjct: 564 ELGFYASEQLLSLKPKDPETYVLLLNMYLSADRFDDVSRVRKMMEVEKVGKLKDWSWI 621



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 115/421 (27%), Positives = 206/421 (48%), Gaps = 21/421 (4%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           +  +H++++ L+ +G Y +   L +V+ AC+  Q+ +  G Q H   +K   D D  + +
Sbjct: 147 KHAIHVFQEMLY-AGSYPSIYTLSAVLHACSSLQSLK-LGDQFHAYIIKYHLDFDTSVGS 204

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +L S+Y+K  + E A + F  +  ++ ISW S ++    NG  V+ L +F EM       
Sbjct: 205 ALCSLYSKCGRLEDALKAFSRIREKNVISWTSAVSACGDNGAPVKGLRLFVEMISEDIKP 264

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
               L   +S C +I  LELG Q+ +L I  G +E ++ V  +LL LY K    + A R 
Sbjct: 265 NEFTLTSALSQCCEIPSLELGTQVCSLCIKFG-YESNLRVRNSLLYLYLKSGFIVEAHRF 323

Query: 188 FEQMVIRNEVSWTAMISGCID-----------SQNYDTGIDLFRAMQREGVKPTRVTLTI 236
           F +M   + V+W AMI+G               Q     + +F  + + G+KP   TL+ 
Sbjct: 324 FNRMDDVSMVTWNAMIAGHAQMMELTKDNLSACQRGSEALKIFSKLNQSGMKPDLFTLSS 383

Query: 237 VLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK 296
           VL  C+ +  +  G+ IH      GF  D  +S +L+ MY +C      ++   E +  +
Sbjct: 384 VLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYNKCGSIERASKAFLEMS-TR 442

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVH 356
            ++ W+S+I G+SQ G   +A+ +F  M L  + PN+VT + +LS+C+    +S  L  +
Sbjct: 443 TMIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRPNTVTFVGVLSACSHAGMVSQALN-Y 501

Query: 357 CYIMKAGLNFDVSIGN--ALMNMYSKCGSITSSHQIFNEM--AARDFVSWTTLISGYGFH 412
             IM+        + +   +++M+ + G +  +     +M     +F+ W+  I+G   H
Sbjct: 502 FEIMQKKYKIKPVMDHYECMVDMFVRLGRLEQALNFIKKMNYEPSEFI-WSNFIAGCRSH 560

Query: 413 G 413
           G
Sbjct: 561 G 561



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 110/226 (48%), Gaps = 8/226 (3%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           +L+ SG+  +   L SV+  C+     +  G Q+H   +K+G  +D ++S SLISMY K 
Sbjct: 368 KLNQSGMKPDLFTLSSVLSVCSRMLAIEQ-GEQIHAQTIKTGFLSDVIVSTSLISMYNKC 426

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
              E A + F EM  R  I+W S+I  F+Q+G   ++L +F +M L G         G++
Sbjct: 427 GSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRPNTVTFVGVL 486

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVS--TALLDLYSKCHHWLIALRVFEQMVIR 194
           S CS  G   + + ++   I+   +++   +     ++D++ +      AL   ++M   
Sbjct: 487 SACSHAG--MVSQALNYFEIMQKKYKIKPVMDHYECMVDMFVRLGRLEQALNFIKKMNYE 544

Query: 195 -NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLL 239
            +E  W+  I+GC    N + G   + + Q   +KP      ++LL
Sbjct: 545 PSEFIWSNFIAGCRSHGNLELG--FYASEQLLSLKPKDPETYVLLL 588



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 94/187 (50%), Gaps = 2/187 (1%)

Query: 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
           E   +  + +L  C  +   S    VH ++MK G + +  + + L+N+Y+KCG++  + +
Sbjct: 61  EEEKLFYVPLLQQCLDKRSYSGTQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARR 120

Query: 390 IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL 449
           +F  M  R+ V+WTTL+ G+  +   + A+ +F EM  +G  P   T+ A+L AC+    
Sbjct: 121 VFENMPRRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSIYTLSAVLHACSSLQS 180

Query: 450 VKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLV 509
           +K  +     ++K   +       +    L  K G++EDA K  S +  K +    +S V
Sbjct: 181 LKLGDQFHAYIIK-YHLDFDTSVGSALCSLYSKCGRLEDALKAFSRIREK-NVISWTSAV 238

Query: 510 SACRIHG 516
           SAC  +G
Sbjct: 239 SACGDNG 245


>gi|57899090|dbj|BAD86909.1| putative PPR986-12 [Oryza sativa Japonica Group]
          Length = 560

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 163/498 (32%), Positives = 274/498 (55%), Gaps = 8/498 (1%)

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A  LFDEMP RD ++W ++++ +  NG    +L++FR M   G       L+ +++ C  
Sbjct: 22  ARALFDEMPERDVVAWTAMLSGYASNGLRREALDVFRRMVAAGAAPNEYTLSSVLTACRG 81

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI-ALRVFEQM-VIRNEVSW 199
                +   +HA+ +  G   +  +V  AL+D Y+     ++ A R+F+ +   R   SW
Sbjct: 82  PCAPAMAMPLHAVAVRRGVDRMP-YVVNALIDSYASLAEGVVDARRLFDALGSGRTAASW 140

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
           T+MI+G        TG+ LF+ M ++GV+ +    +I L AC  + DL  G+ +H     
Sbjct: 141 TSMIAGYARWGQERTGLRLFKTMLKDGVELSTFACSIALHACTLVIDLCLGQQLHLQCIK 200

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
              D +  +  +L+ MYC C   L  AR +F+ T  ++++ W+++I GYSQ   L  A++
Sbjct: 201 KALDVNLAVVNSLIDMYCTCARILD-ARSLFDGTPERNLITWNTMIAGYSQCDPLM-ALQ 258

Query: 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           L   M     EPN  TL +I S+C   + L  G  VH  +++   + D+ +GNAL++MYS
Sbjct: 259 LLLEMN---DEPNCFTLTSITSACADLAALRCGKQVHGAVLRRSYSDDLQMGNALVDMYS 315

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           KCGSIT++  +F+ M  +D  SWT++I+GYG +GYG EA+QLF  M  +GV PD +  L+
Sbjct: 316 KCGSITNAKNVFDRMGCKDKFSWTSMIAGYGMNGYGNEAVQLFSSMIHAGVHPDHVVFLS 375

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           ++S+C+HAGLV E    F +++ E  +    E Y   V+LL ++G++ +A  ++ TMP  
Sbjct: 376 LISSCSHAGLVDEGWNFFRSMINEYNLQPNKEVYGSVVNLLARAGRLREALDLIDTMPFA 435

Query: 500 PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVW 559
           P   +  +L+ A ++H  +E+  + A ++ E  P++  NY +L+ + +    W       
Sbjct: 436 PDEYVWGALLGASKMHNNVEMGRLAARKITEINPDDVKNYIMLASIYAAGSKWGEYAFTR 495

Query: 560 RVMRAKGLSKSYGFSRIE 577
           R +R  G  K  G S IE
Sbjct: 496 RSLRGIGSRKEAGISWIE 513



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 120/450 (26%), Positives = 210/450 (46%), Gaps = 14/450 (3%)

Query: 3   SKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDAD 62
           S     + L ++++ +  +G   N   L SV+ AC          + LH  A++ G D  
Sbjct: 46  SNGLRREALDVFRR-MVAAGAAPNEYTLSSVLTAC-RGPCAPAMAMPLHAVAVRRGVDRM 103

Query: 63  PVISNSLISMYAKFSKP-ESAYQLFDEMPY-RDTISWNSIINCFTQNGFYVRSLEMFREM 120
           P + N+LI  YA  ++    A +LFD +   R   SW S+I  + + G     L +F+ M
Sbjct: 104 PYVVNALIDSYASLAEGVVDARRLFDALGSGRTAASWTSMIAGYARWGQERTGLRLFKTM 163

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
              G  L     +  +  C+ + +L LG+Q+H L  +  + ++++ V  +L+D+Y  C  
Sbjct: 164 LKDGVELSTFACSIALHACTLVIDLCLGQQLH-LQCIKKALDVNLAVVNSLIDMYCTCAR 222

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
            L A  +F+    RN ++W  MI+G          + L   M  E   P   TLT +  A
Sbjct: 223 ILDARSLFDGTPERNLITWNTMIAGYSQCDPL-MALQLLLEMNDE---PNCFTLTSITSA 278

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
           CA+L  LR GK +HG      +  D  +  AL+ MY +C  ++  A+ +F+R   KD   
Sbjct: 279 CADLAALRCGKQVHGAVLRRSYSDDLQMGNALVDMYSKCG-SITNAKNVFDRMGCKDKFS 337

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG-VHCYI 359
           W+S+I GY  +G  +EA++LFS M    + P+ V  L+++SSC+    +  G       I
Sbjct: 338 WTSMIAGYGMNGYGNEAVQLFSSMIHAGVHPDHVVFLSLISSCSHAGLVDEGWNFFRSMI 397

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA-ARDFVSWTTLISGYGFHGYGEEA 418
            +  L  +  +  +++N+ ++ G +  +  + + M  A D   W  L+     H   E  
Sbjct: 398 NEYNLQPNKEVYGSVVNLLARAGRLREALDLIDTMPFAPDEYVWGALLGASKMHNNVEMG 457

Query: 419 LQLFLEMQESGVEPDAITVLAILSACNHAG 448
                ++ E  + PD +    +L++   AG
Sbjct: 458 RLAARKITE--INPDDVKNYIMLASIYAAG 485


>gi|125525521|gb|EAY73635.1| hypothetical protein OsI_01524 [Oryza sativa Indica Group]
          Length = 560

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 163/498 (32%), Positives = 274/498 (55%), Gaps = 8/498 (1%)

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A  LFDEMP RD ++W ++++ +  NG    +L++FR M   G       L+ +++ C  
Sbjct: 22  ARALFDEMPERDVVAWTAMLSGYASNGLRREALDVFRRMVAAGAAPNEYTLSSVLTACRG 81

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI-ALRVFEQM-VIRNEVSW 199
                +   +HA+ +  G   +  +V  AL+D Y+     ++ A R+F+ +   R   SW
Sbjct: 82  PCAPAMAMPLHAVAVRRGVDRMP-YVVNALIDSYASLAEGVVDARRLFDALGSGRTAASW 140

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
           T+MI+G        TG+ LF+ M ++GV+ +    +I L AC  + DL  G+ +H     
Sbjct: 141 TSMIAGYARWGQERTGLRLFKTMLKDGVELSTFACSIALHACTLVIDLCLGQQLHLQCIK 200

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
              D +  +  +L+ MYC C   L  AR +F+ T  ++++ W+++I GYSQ   L  A++
Sbjct: 201 KALDVNLAVVNSLIDMYCTCARILD-ARSLFDGTPERNLITWNTMIAGYSQCDPLM-ALQ 258

Query: 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           L   M     EPN  TL +I S+C   + L  G  VH  +++   + D+ +GNAL++MYS
Sbjct: 259 LLLEMN---DEPNCFTLTSITSACADLAALRCGKQVHGAVLRRSYSDDLQMGNALVDMYS 315

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           KCGSIT++  +F+ M  +D  SWT++I+GYG +GYG EA+QLF  M  +GV PD +  L+
Sbjct: 316 KCGSITNAKNVFDRMGCKDKFSWTSMIAGYGMNGYGNEAVQLFSSMIHAGVHPDHVVFLS 375

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           ++S+C+HAGLV E    F +++ E  +    E Y   V+LL ++G++ +A  ++ TMP  
Sbjct: 376 LISSCSHAGLVDEGWNFFRSMINEYNLQPNKEVYGSVVNLLARAGRLREALDLIDTMPFA 435

Query: 500 PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVW 559
           P   +  +L+ A ++H  +E+  + A ++ E  P++  NY +L+ + +    W       
Sbjct: 436 PDEYVWGALLGASKMHNNVEMGRLAARKITEINPDDVKNYIMLASIYAAGSKWGEYAFTR 495

Query: 560 RVMRAKGLSKSYGFSRIE 577
           R +R  G  K  G S IE
Sbjct: 496 RSLRGIGSRKEAGISWIE 513



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 120/450 (26%), Positives = 210/450 (46%), Gaps = 14/450 (3%)

Query: 3   SKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDAD 62
           S     + L ++++ +  +G   N   L SV+ AC          + LH  A++ G D  
Sbjct: 46  SNGLRREALDVFRR-MVAAGAAPNEYTLSSVLTAC-RGPCAPAMAMPLHAVAVRRGVDRM 103

Query: 63  PVISNSLISMYAKFSKP-ESAYQLFDEMPY-RDTISWNSIINCFTQNGFYVRSLEMFREM 120
           P + N+LI  YA  ++    A +LFD +   R   SW S+I  + + G     L +F+ M
Sbjct: 104 PYVVNALIDSYASLAEGVVDARRLFDALGSGRTAASWTSMIAGYARWGQERTGLRLFKTM 163

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
              G  L     +  +  C+ + +L LG+Q+H L  +  + ++++ V  +L+D+Y  C  
Sbjct: 164 LKDGVELSTFACSIALHACTLVIDLCLGQQLH-LQCIKKALDVNLAVVNSLIDMYCTCAR 222

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
            L A  +F+    RN ++W  MI+G          + L   M  E   P   TLT +  A
Sbjct: 223 ILDARSLFDGTPERNLITWNTMIAGYSQCDPL-MALQLLLEMNDE---PNCFTLTSITSA 278

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
           CA+L  LR GK +HG      +  D  +  AL+ MY +C  ++  A+ +F+R   KD   
Sbjct: 279 CADLAALRCGKQVHGAVLRRSYSDDLQMGNALVDMYSKCG-SITNAKNVFDRMGCKDKFS 337

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG-VHCYI 359
           W+S+I GY  +G  +EA++LFS M    + P+ V  L+++SSC+    +  G       I
Sbjct: 338 WTSMIAGYGMNGYGNEAVQLFSSMIHAGVHPDHVVFLSLISSCSHAGLVDEGWNFFRSMI 397

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA-ARDFVSWTTLISGYGFHGYGEEA 418
            +  L  +  +  +++N+ ++ G +  +  + + M  A D   W  L+     H   E  
Sbjct: 398 NEYNLQPNKEVYGSVVNLLARAGRLREALDLIDTMPFAPDEYVWGALLGASKMHNNVEMG 457

Query: 419 LQLFLEMQESGVEPDAITVLAILSACNHAG 448
                ++ E  + PD +    +L++   AG
Sbjct: 458 RLAARKITE--INPDDVKNYIMLASIYAAG 485



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 40/63 (63%)

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
           G++  +  +F+EM  RD V+WT ++SGY  +G   EAL +F  M  +G  P+  T+ ++L
Sbjct: 17  GAVCHARALFDEMPERDVVAWTAMLSGYASNGLRREALDVFRRMVAAGAAPNEYTLSSVL 76

Query: 442 SAC 444
           +AC
Sbjct: 77  TAC 79


>gi|297836444|ref|XP_002886104.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331944|gb|EFH62363.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 723

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 176/583 (30%), Positives = 327/583 (56%), Gaps = 26/583 (4%)

Query: 5   HFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPV 64
           H +E+    +  +L   G   N + L  VI AC   ++    G ++H   ++SG      
Sbjct: 113 HGFEEEGLWWFSKLRVWGFEPNVSTLVLVIHAC---RSLWFDGEKIHGYVIRSGFWRISS 169

Query: 65  ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG 124
           + NS++ +Y++F    SA +LFDEM  RD ISW+ +I  + Q+   V  LE+F+EM    
Sbjct: 170 VQNSILCLYSEFDSL-SARKLFDEMSERDVISWSVVIRSYVQSQEPVLGLELFKEM---- 224

Query: 125 FVLKAEL------LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKC 178
            V +A+       +  ++  C+ + ++++GR +H   I  G   + VFV  +L+D+YSK 
Sbjct: 225 -VREAKTEPDCVTVTSVLKACAVLDDIDVGRSVHGFSIRRGFDLVDVFVRNSLIDMYSKG 283

Query: 179 HHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVL 238
           +    A RVF++   RN VSW ++++G + +Q YD  +++FR M++E ++   VTL  +L
Sbjct: 284 YDADSAFRVFDETTCRNIVSWNSILAGFVYNQRYDEALEMFRLMKKEALEADEVTLVSLL 343

Query: 239 LACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDV 298
             C         K+IHG     G++ +    ++LM  Y  C+  +  AR +F+    KDV
Sbjct: 344 QVCKFFEHPLPCKSIHGVIIRRGYESNEVALSSLMDAYTSCS-LVDDARTVFDSMSYKDV 402

Query: 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCY 358
           V  S++I G  + G   EA+ +F +M   R +PN++T++++LS+C+  + L      H  
Sbjct: 403 VSCSTMISGLGRCGRSDEAISIFCQM---RDKPNAITVISLLSACSVSAVLRTSKWAHGI 459

Query: 359 IMKAGLNF-DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEE 417
            ++ GL   D+S+  ++++ Y+KCG+I  + + F+++  +  VSWT +IS Y  +G  ++
Sbjct: 460 AIRRGLAINDISVDTSIVDAYAKCGAIDIARRTFDQITEKSIVSWTVIISAYAINGLPDK 519

Query: 418 ALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYV 477
           AL  F EM+     P+A+T LA LSACNH GLVK+   +F ++++E +   +++HY+C V
Sbjct: 520 ALASFDEMKRDSYTPNAVTYLAALSACNHGGLVKKGLMIFRSMVEEDQ-KPSLQHYSCIV 578

Query: 478 DLLGKSGKIEDACKVVSTMP--MKPSTRILSSLVSAC--RIHGRLEVAEMLAHQLIEAEP 533
           D+L ++G+I+ A +++  +P  +K       +++S C  R+   +  +E++A +++E EP
Sbjct: 579 DMLSRAGEIDTAMELIKNLPEDVKAGASAWGAILSGCRNRLKSGIITSEVVA-EVLELEP 637

Query: 534 ENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
             ++ Y L S V +   +W+    + R+++ + +    G+S +
Sbjct: 638 LCSSGYLLASSVFAAEKSWVDVAMMRRLVKERNVRVVAGYSMV 680



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 149/506 (29%), Positives = 263/506 (51%), Gaps = 30/506 (5%)

Query: 17  ELHPSGL-YSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           E+  +G+ +++  + P V KACA              + L  G ++   + NS+   Y K
Sbjct: 34  EIQSAGIQFNDPFVFPIVFKACA------------KLSWLLQGFESYVSVGNSIADFYMK 81

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
                S  + FD M  RD++SWN I+     +GF    L  F ++ + GF      L  +
Sbjct: 82  CGDLCSGLRAFDCMNSRDSVSWNVIVFGLLDHGFEEEGLWWFSKLRVWGFEPNVSTLVLV 141

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           I  C  +     G +IH  VI  G + +S  V  ++L LYS+    L A ++F++M  R+
Sbjct: 142 IHACRSL--WFDGEKIHGYVIRSGFWRISS-VQNSILCLYSEFDS-LSARKLFDEMSERD 197

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREG-VKPTRVTLTIVLLACAELRDLRNGKAIH 254
            +SW+ +I   + SQ    G++LF+ M RE   +P  VT+T VL ACA L D+  G+++H
Sbjct: 198 VISWSVVIRSYVQSQEPVLGLELFKEMVREAKTEPDCVTVTSVLKACAVLDDIDVGRSVH 257

Query: 255 GYAYCCGFDF-DHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGD 313
           G++   GFD  D  +  +L+ MY +  +A    R +F+ T  +++V W+SI+ G+  +  
Sbjct: 258 GFSIRRGFDLVDVFVRNSLIDMYSKGYDADSAFR-VFDETTCRNIVSWNSILAGFVYNQR 316

Query: 314 LSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGL---GVHCYIMKAGLNFDVSI 370
             EA+++F  M+ E +E + VTL+++L  C    F  H L    +H  I++ G   +   
Sbjct: 317 YDEALEMFRLMKKEALEADEVTLVSLLQVC---KFFEHPLPCKSIHGVIIRRGYESNEVA 373

Query: 371 GNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV 430
            ++LM+ Y+ C  +  +  +F+ M+ +D VS +T+ISG G  G  +EA+ +F +M++   
Sbjct: 374 LSSLMDAYTSCSLVDDARTVFDSMSYKDVVSCSTMISGLGRCGRSDEAISIFCQMRD--- 430

Query: 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDAC 490
           +P+AITV+++LSAC+ + +++ ++      ++       I      VD   K G I+ A 
Sbjct: 431 KPNAITVISLLSACSVSAVLRTSKWAHGIAIRRGLAINDISVDTSIVDAYAKCGAIDIAR 490

Query: 491 KVVSTMPMKPSTRILSSLVSACRIHG 516
           +    +  K S    + ++SA  I+G
Sbjct: 491 RTFDQITEK-SIVSWTVIISAYAING 515



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 107/399 (26%), Positives = 195/399 (48%), Gaps = 46/399 (11%)

Query: 161 FELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFR 220
           FE  V V  ++ D Y KC      LR F+ M  R+ VSW  ++ G +D    + G+  F 
Sbjct: 65  FESYVSVGNSIADFYMKCGDLCSGLRAFDCMNSRDSVSWNVIVFGLLDHGFEEEGLWWFS 124

Query: 221 AMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECT 280
            ++  G +P   TL +V+ AC  L    +G+ IHGY    GF     +  +++ +Y E  
Sbjct: 125 KLRVWGFEPNVSTLVLVIHACRSL--WFDGEKIHGYVIRSGFWRISSVQNSILCLYSEFD 182

Query: 281 EALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM-RLERIEPNSVTLLAI 339
                AR +F+    +DV+ WS +IR Y QS +    ++LF  M R  + EP+ VT+ ++
Sbjct: 183 SL--SARKLFDEMSERDVISWSVVIRSYVQSQEPVLGLELFKEMVREAKTEPDCVTVTSV 240

Query: 340 LSSCTRQSFLSHGLGVHCYIMKAGLNF-DVSIGNALMNMYSKCGSITSSHQIFNEMAARD 398
           L +C     +  G  VH + ++ G +  DV + N+L++MYSK     S+ ++F+E   R+
Sbjct: 241 LKACAVLDDIDVGRSVHGFSIRRGFDLVDVFVRNSLIDMYSKGYDADSAFRVFDETTCRN 300

Query: 399 FVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC-------------- 444
            VSW ++++G+ ++   +EAL++F  M++  +E D +T++++L  C              
Sbjct: 301 IVSWNSILAGFVYNQRYDEALEMFRLMKKEALEADEVTLVSLLQVCKFFEHPLPCKSIHG 360

Query: 445 ---------------------NHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS 483
                                    LV +A T+F+++  +  ++ +       +  LG+ 
Sbjct: 361 VIIRRGYESNEVALSSLMDAYTSCSLVDDARTVFDSMSYKDVVSCST-----MISGLGRC 415

Query: 484 GKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAE 522
           G+ ++A  +   M  KP+   + SL+SAC +   L  ++
Sbjct: 416 GRSDEAISIFCQMRDKPNAITVISLLSACSVSAVLRTSK 454



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 75/144 (52%), Gaps = 12/144 (8%)

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAIL-SSCTRQSFLSHGLGVHCYIM 360
           SS I+  S +G   E +  +S ++   I+ N   +  I+  +C + S+L  G   +    
Sbjct: 13  SSKIKQASVNGKWREVVSGYSEIQSAGIQFNDPFVFPIVFKACAKLSWLLQGFESY---- 68

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
                  VS+GN++ + Y KCG + S  + F+ M +RD VSW  ++ G   HG+ EE L 
Sbjct: 69  -------VSVGNSIADFYMKCGDLCSGLRAFDCMNSRDSVSWNVIVFGLLDHGFEEEGLW 121

Query: 421 LFLEMQESGVEPDAITVLAILSAC 444
            F +++  G EP+  T++ ++ AC
Sbjct: 122 WFSKLRVWGFEPNVSTLVLVIHAC 145


>gi|413932452|gb|AFW67003.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 719

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 175/530 (33%), Positives = 278/530 (52%), Gaps = 11/530 (2%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           Q+H  A+++G  AD  I + LI +Y++     +A ++F  M   D + + S+++   +NG
Sbjct: 157 QVHSLAVRAGFAADAWIGSCLIELYSRCGSLRAAEEVFRRMEAPDVVGYTSLVSALCRNG 216

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVI-VDGSFELSVFV 167
              R++++  +M   G       +  +++ C +     +G QIH  ++ V GS   SV+ 
Sbjct: 217 ELARAVDVLCQMTRQGLQPNEHTMTSMLAECPR----GIGEQIHGYMLKVMGS--QSVYA 270

Query: 168 STALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV 227
           STAL+D YS+   +  A  VFE +  +N VSW +M+  CI     D  + +F  M  EGV
Sbjct: 271 STALIDFYSRYGDFGTAKTVFENLESKNVVSWCSMMQLCIRDGRLDDALRVFSEMISEGV 330

Query: 228 KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPAR 287
           +P     +I L AC  +     G+ IH  A       D  +S AL+ MY   +  +    
Sbjct: 331 QPNEFAFSIALSACGSVC---LGRQIHCSAIKRDLMTDIRVSNALLSMYGR-SGFVSELE 386

Query: 288 IIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQS 347
            +  + +  D+V W++ I    Q+G   +A+ L  +M  E   PN     + LSSC   +
Sbjct: 387 AVLGKIENPDLVSWTAAISANFQNGFSEKAVALLLQMHSEGFTPNDYAFSSGLSSCADLA 446

Query: 348 FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLIS 407
            L  G  +HC  +K G +F V  GNAL+NMYSKCG I S+   F+ M   D +SW +LI 
Sbjct: 447 LLHQGRQLHCLALKLGCDFKVCTGNALINMYSKCGRIGSARLAFDVMDTHDVMSWNSLIH 506

Query: 408 GYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIA 467
           G   HG    AL+ F EM  S   PD  T L++L  CNHAGLVKE ET F  +     + 
Sbjct: 507 GLAQHGDANLALETFSEMCSSDWRPDDSTFLSVLVGCNHAGLVKEGETFFRQMTDRYGLT 566

Query: 468 LAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQ 527
               HYAC +D+LG++G+  +A +++  MP +P   I  +L+++C++H  L++ ++ A +
Sbjct: 567 PTPSHYACMIDMLGRNGRFAEALRMIENMPFEPDVLIWKTLLASCKLHRNLDIGKLAADK 626

Query: 528 LIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           L+E    ++A+Y L+S + +    W  AE V R M   G+ K  G+S IE
Sbjct: 627 LMELSERDSASYVLMSNLYAMHEEWRDAERVRRRMDEIGVKKDAGWSWIE 676



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 108/375 (28%), Positives = 185/375 (49%), Gaps = 9/375 (2%)

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A  LFD MP ++ ++W + I+  T+NG    +  MF +M   G           ++ C+ 
Sbjct: 89  ALDLFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFADMLESGVAPNDFACNAALAACAA 148

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
            G L LG Q+H+L +  G F    ++ + L++LYS+C     A  VF +M   + V +T+
Sbjct: 149 AGALGLGEQVHSLAVRAG-FAADAWIGSCLIELYSRCGSLRAAEEVFRRMEAPDVVGYTS 207

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           ++S    +      +D+   M R+G++P   T+T +L  C   R +  G+ IHGY     
Sbjct: 208 LVSALCRNGELARAVDVLCQMTRQGLQPNEHTMTSMLAECP--RGI--GEQIHGYMLKVM 263

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
                + S AL+  Y    +    A+ +FE  + K+VV W S+++   + G L +A+++F
Sbjct: 264 GSQSVYASTALIDFYSRYGD-FGTAKTVFENLESKNVVSWCSMMQLCIRDGRLDDALRVF 322

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
           S M  E ++PN       LS+C        G  +HC  +K  L  D+ + NAL++MY + 
Sbjct: 323 SEMISEGVQPNEFAFSIALSACGSVCL---GRQIHCSAIKRDLMTDIRVSNALLSMYGRS 379

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
           G ++    +  ++   D VSWT  IS    +G+ E+A+ L L+M   G  P+     + L
Sbjct: 380 GFVSELEAVLGKIENPDLVSWTAAISANFQNGFSEKAVALLLQMHSEGFTPNDYAFSSGL 439

Query: 442 SACNHAGLVKEAETL 456
           S+C    L+ +   L
Sbjct: 440 SSCADLALLHQGRQL 454



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 157/309 (50%), Gaps = 17/309 (5%)

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
           AL +F++M  +N V+WT  ISGC  +   +    +F  M   GV P        L ACA 
Sbjct: 89  ALDLFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFADMLESGVAPNDFACNAALAACAA 148

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
              L  G+ +H  A   GF  D  + + L+ +Y  C  +L  A  +F R +  DVV ++S
Sbjct: 149 AGALGLGEQVHSLAVRAGFAADAWIGSCLIELYSRCG-SLRAAEEVFRRMEAPDVVGYTS 207

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG--VHCYIMK 361
           ++    ++G+L+ A+ +  +M  + ++PN  T+ ++L+ C R      G+G  +H Y++K
Sbjct: 208 LVSALCRNGELARAVDVLCQMTRQGLQPNEHTMTSMLAECPR------GIGEQIHGYMLK 261

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
              +  V    AL++ YS+ G   ++  +F  + +++ VSW +++      G  ++AL++
Sbjct: 262 VMGSQSVYASTALIDFYSRYGDFGTAKTVFENLESKNVVSWCSMMQLCIRDGRLDDALRV 321

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKE--AETLFNNVMKEKKIALAIEHYACYVDL 479
           F EM   GV+P+       LSAC    L ++     +  ++M + +++ A+      + +
Sbjct: 322 FSEMISEGVQPNEFAFSIALSACGSVCLGRQIHCSAIKRDLMTDIRVSNAL------LSM 375

Query: 480 LGKSGKIED 488
            G+SG + +
Sbjct: 376 YGRSGFVSE 384



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 122/254 (48%), Gaps = 31/254 (12%)

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
           +F+R   K+VV W++ I G +++G    A  +F+ M    + PN     A L++C     
Sbjct: 92  LFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFADMLESGVAPNDFACNAALAACAAAGA 151

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
           L  G  VH   ++AG   D  IG+ L+ +YS+CGS+ ++ ++F  M A D V +T+L+S 
Sbjct: 152 LGLGEQVHSLAVRAGFAADAWIGSCLIELYSRCGSLRAAEEVFRRMEAPDVVGYTSLVSA 211

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468
              +G    A+ +  +M   G++P+  T+ ++L+ C   G+ ++       VM  + +  
Sbjct: 212 LCRNGELARAVDVLCQMTRQGLQPNEHTMTSMLAECPR-GIGEQIHGYMLKVMGSQSVYA 270

Query: 469 A---IEHYACYVD------------------------LLGKSGKIEDACKVVSTM---PM 498
           +   I+ Y+ Y D                        L  + G+++DA +V S M    +
Sbjct: 271 STALIDFYSRYGDFGTAKTVFENLESKNVVSWCSMMQLCIRDGRLDDALRVFSEMISEGV 330

Query: 499 KPSTRILSSLVSAC 512
           +P+    S  +SAC
Sbjct: 331 QPNEFAFSIALSAC 344



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 6/157 (3%)

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           DV +    ++   K G +  +  +F+ M  ++ V+WTT ISG   +G  E A  +F +M 
Sbjct: 69  DVVLDCKRLDGLMKSGRLGDALDLFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFADML 128

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSG 484
           ESGV P+     A L+AC  AG +   E + +  ++      A + +  +C ++L  + G
Sbjct: 129 ESGVAPNDFACNAALAACAAAGALGLGEQVHSLAVRA---GFAADAWIGSCLIELYSRCG 185

Query: 485 KIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA 521
            +  A +V   M   P     +SLVSA   +G L  A
Sbjct: 186 SLRAAEEVFRRME-APDVVGYTSLVSALCRNGELARA 221


>gi|115467784|ref|NP_001057491.1| Os06g0314100 [Oryza sativa Japonica Group]
 gi|54291635|dbj|BAD62428.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|113595531|dbj|BAF19405.1| Os06g0314100 [Oryza sativa Japonica Group]
 gi|125597005|gb|EAZ36785.1| hypothetical protein OsJ_21122 [Oryza sativa Japonica Group]
          Length = 992

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 176/566 (31%), Positives = 305/566 (53%), Gaps = 8/566 (1%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           + +   G+  +   + SVI  C + +   H G  +H  A++S  + +  + N+L++MYA 
Sbjct: 434 RRMQIEGVDPDALTVISVISKCRHTED-LHVGKSIHAYAVRSRLELNESVMNALLAMYAD 492

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
             +     +LF  M  R  ISWN+II+ F +NG  V  L  F +M L         L  +
Sbjct: 493 CGQLSICCKLFHTMEVRTLISWNTIISGFAENGDSVACLRFFCQMRLADMQFDLVTLIAL 552

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           IS  S I ++ +G  +H+L I  G   L V V+ AL+ +Y+ C       ++F+ +   N
Sbjct: 553 ISSLSAIEDITVGESVHSLAIRSGC-NLDVSVANALITMYTNCGIIQAGEKLFDSLSSVN 611

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC-AELRDLRNGKAIH 254
            +S+ A+++G   +  ++  + LF  M +   KP  +TL  +L  C ++L+    GK +H
Sbjct: 612 TISYNALMTGYRKNNLFEEILPLFYHMIKNDQKPNIITLLNLLPICHSQLQ----GKTVH 667

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
            YA       +  L  + + MY      L     +F     ++ ++W++I+    Q    
Sbjct: 668 SYAIRNFSKLETSLFTSAICMYSRFNN-LEYCHNLFCLVGERNNIVWNAILSACVQCKQA 726

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
             A   F +++   ++ ++VT+LA++S+C++         V    ++ G +  + + NAL
Sbjct: 727 GVAFDYFRQIQFLNVKTDAVTMLALISACSQLGKADLAECVTAIALQKGFDGTIIVLNAL 786

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           ++M+S+CGSI+ + +IF+    +D VSW+T+I+ Y  HG G  AL LFL M  SG++PD 
Sbjct: 787 IDMHSRCGSISFARKIFDISMEKDSVSWSTMINAYSMHGDGGSALDLFLMMVSSGIKPDD 846

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS 494
           IT +++LSAC+ +G +++  TLF +++ +  I   +EHYAC VDLLG++G +++A  +V+
Sbjct: 847 ITFVSVLSACSRSGFLEQGRTLFRSMLADHGITPRMEHYACMVDLLGRTGHLDEAYDIVT 906

Query: 495 TMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLG 554
           TMP +PS  +L SL+ ACR HG  ++ E +   L E++  N  +Y +LS + + +G W  
Sbjct: 907 TMPFRPSKSLLESLLGACRFHGNSKLGESVGKILTESDHGNPRSYVMLSNIYASAGKWSD 966

Query: 555 AEEVWRVMRAKGLSKSYGFSRIENEY 580
            E +   M AKGL K  G S I   Y
Sbjct: 967 YERLRSDMEAKGLIKDVGVSLIGGTY 992



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 125/438 (28%), Positives = 239/438 (54%), Gaps = 6/438 (1%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           F+ + L LY++        S+    P VI+ACA A +    G ++HC  +++G   +  +
Sbjct: 124 FHRELLGLYRE---VCAFGSDNFTFPPVIRACA-AVSCLRLGKEVHCRVVRTGHGGNVGV 179

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
             +L+ MYAK  + + + ++FD M  RD ISWN++I+ ++ NG  + + E  ++M   GF
Sbjct: 180 QTALLDMYAKSGQVDLSRRVFDGMKSRDLISWNAMISGYSLNGCLLEAAEALKQMQQDGF 239

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
              A  L GI+S+ S +G  + G  +HA  +  G       ++ A + +Y+   H   +L
Sbjct: 240 RPNASSLVGIVSMVSGLGVRDAGDPLHAFALKSGVLG-DESLTPAFISMYAAFGHLSSSL 298

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
            +F Q ++ N VS  +MIS C+    ++    +FR M+ +G+ P  VT+  +L  C+   
Sbjct: 299 SLFHQSLVDNLVSCNSMISVCMQHGAWEKAFGVFRLMRCKGLVPNLVTVVSILPCCSNFF 358

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
            + +G+++HG     G      + +AL+ MY +  + L  A  +F     K  ++W+S+I
Sbjct: 359 GINHGESVHGMVIKFGLAEQVSVVSALVSMYSKLGD-LDSAVFLFSSVTEKSQLLWNSLI 417

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
            GY  +   +  M    RM++E ++P+++T+++++S C     L  G  +H Y +++ L 
Sbjct: 418 SGYLVNNKWNMVMGSVRRMQIEGVDPDALTVISVISKCRHTEDLHVGKSIHAYAVRSRLE 477

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            + S+ NAL+ MY+ CG ++   ++F+ M  R  +SW T+ISG+  +G     L+ F +M
Sbjct: 478 LNESVMNALLAMYADCGQLSICCKLFHTMEVRTLISWNTIISGFAENGDSVACLRFFCQM 537

Query: 426 QESGVEPDAITVLAILSA 443
           + + ++ D +T++A++S+
Sbjct: 538 RLADMQFDLVTLIALISS 555



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 125/441 (28%), Positives = 220/441 (49%), Gaps = 9/441 (2%)

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYR---DTISWNSIINCFTQNGFYVRSLEMFR 118
           D  +    +  Y  F KP SA  +F    YR   +    N  + CF+ +GF+   L ++R
Sbjct: 75  DASVVAGAVERYLFFGKPASAAAVFAGF-YRGRAEVYDLNIAVRCFSDHGFHRELLGLYR 133

Query: 119 EMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKC 178
           E  +C F         +I  C+ +  L LG+++H  V+  G    +V V TALLD+Y+K 
Sbjct: 134 E--VCAFGSDNFTFPPVIRACAAVSCLRLGKEVHCRVVRTGHGG-NVGVQTALLDMYAKS 190

Query: 179 HHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVL 238
               ++ RVF+ M  R+ +SW AMISG   +       +  + MQ++G +P   +L  ++
Sbjct: 191 GQVDLSRRVFDGMKSRDLISWNAMISGYSLNGCLLEAAEALKQMQQDGFRPNASSLVGIV 250

Query: 239 LACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDV 298
              + L     G  +H +A   G   D  L+ A + MY      L  +  +F ++ V ++
Sbjct: 251 SMVSGLGVRDAGDPLHAFALKSGVLGDESLTPAFISMYAAFGH-LSSSLSLFHQSLVDNL 309

Query: 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCY 358
           V  +S+I    Q G   +A  +F  MR + + PN VT+++IL  C+    ++HG  VH  
Sbjct: 310 VSCNSMISVCMQHGAWEKAFGVFRLMRCKGLVPNLVTVVSILPCCSNFFGINHGESVHGM 369

Query: 359 IMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEA 418
           ++K GL   VS+ +AL++MYSK G + S+  +F+ +  +  + W +LISGY  +      
Sbjct: 370 VIKFGLAEQVSVVSALVSMYSKLGDLDSAVFLFSSVTEKSQLLWNSLISGYLVNNKWNMV 429

Query: 419 LQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVD 478
           +     MQ  GV+PDA+TV++++S C H   +   +++    ++  ++ L        + 
Sbjct: 430 MGSVRRMQIEGVDPDALTVISVISKCRHTEDLHVGKSIHAYAVRS-RLELNESVMNALLA 488

Query: 479 LLGKSGKIEDACKVVSTMPMK 499
           +    G++   CK+  TM ++
Sbjct: 489 MYADCGQLSICCKLFHTMEVR 509


>gi|357151860|ref|XP_003575929.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14820-like, partial [Brachypodium
           distachyon]
          Length = 498

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 158/459 (34%), Positives = 255/459 (55%), Gaps = 31/459 (6%)

Query: 149 RQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCID 208
           R  H + +  G+ E   FV TAL+  Y+ C     A RVF+ M  R+ V+W  M+    +
Sbjct: 13  RGTHGIAVRVGADE-DGFVGTALVGAYAACQRVAEARRVFDGMPERDLVAWGVMLDSYFN 71

Query: 209 SQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHL 268
           +QNY   + L   M+R  V P +V L  VL  C   R LR+GK IH Y        D  L
Sbjct: 72  TQNYRETLLLLNKMKRSRVVPDQVILATVLSTCGHTRHLRSGKTIHSYIQVSDIFVDARL 131

Query: 269 SAALMHMYCECTE------------------------------ALHPARIIFERTKVKDV 298
           S+AL++MY  C +                               +  AR IF     KDV
Sbjct: 132 SSALINMYASCMDMEMADKIYSGMQRKDLVSSTAMVCGYAKNGKIEIARSIFNHMAEKDV 191

Query: 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCY 358
           V WS++I  Y+++   SE + LF++M+   + P+ +T+L+++S+C     L     +H  
Sbjct: 192 VSWSAMISAYAENNQPSEVLNLFNKMQGCGVSPDEITMLSVISACANIGSLDKARWIHSI 251

Query: 359 IMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEA 418
           +   G    +SI NAL++M+SKCGS+T +  +FN M  ++ ++WT++I+ +  HG G  A
Sbjct: 252 VGNHGFYKILSICNALIDMFSKCGSLTLALNMFNAMPRKNVITWTSMIAAFAMHGDGPSA 311

Query: 419 LQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVD 478
           L LF +M+  GVEP+ +T L +L AC HAGLV E  +LF  +++E +I    EHY C VD
Sbjct: 312 LTLFGQMKGEGVEPNGVTFLVLLYACCHAGLVYEGRSLFECMLQEYRIEPKHEHYGCMVD 371

Query: 479 LLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAAN 538
           L+G++  +++A  ++ +M ++P+  I  SL++AC +HG +E+ E  A +++E +P +   
Sbjct: 372 LMGRAKLMQEAVDLIESMHIRPNVAIWGSLLAACWMHGDIELGEFAAKKILELDPNHDGA 431

Query: 539 YTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           Y LLS + ++SGNW  A+++  +M+  G+SK  G+S +E
Sbjct: 432 YVLLSNIHAKSGNWNNAQKLRVMMKVHGVSKETGYSWLE 470



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 104/414 (25%), Positives = 186/414 (44%), Gaps = 38/414 (9%)

Query: 51  HCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFY 110
           H  A++ G+D D  +  +L+  YA   +   A ++FD MP RD ++W  +++ +     Y
Sbjct: 16  HGIAVRVGADEDGFVGTALVGAYAACQRVAEARRVFDGMPERDLVAWGVMLDSYFNTQNY 75

Query: 111 VRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTA 170
             +L +  +M     V    +LA ++S C     L  G+ IH+ + V   F +   +S+A
Sbjct: 76  RETLLLLNKMKRSRVVPDQVILATVLSTCGHTRHLRSGKTIHSYIQVSDIF-VDARLSSA 134

Query: 171 LLDLYSKCHHW-------------------------------LIALRVFEQMVIRNEVSW 199
           L+++Y+ C                                   IA  +F  M  ++ VSW
Sbjct: 135 LINMYASCMDMEMADKIYSGMQRKDLVSSTAMVCGYAKNGKIEIARSIFNHMAEKDVVSW 194

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
           +AMIS   ++      ++LF  MQ  GV P  +T+  V+ ACA +  L   + IH     
Sbjct: 195 SAMISAYAENNQPSEVLNLFNKMQGCGVSPDEITMLSVISACANIGSLDKARWIHSIVGN 254

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
            GF     +  AL+ M+ +C  +L  A  +F     K+V+ W+S+I  ++  GD   A+ 
Sbjct: 255 HGFYKILSICNALIDMFSKCG-SLTLALNMFNAMPRKNVITWTSMIAAFAMHGDGPSALT 313

Query: 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV-HCYIMKAGLNFDVSIGNALMNMY 378
           LF +M+ E +EPN VT L +L +C     +  G  +  C + +  +         ++++ 
Sbjct: 314 LFGQMKGEGVEPNGVTFLVLLYACCHAGLVYEGRSLFECMLQEYRIEPKHEHYGCMVDLM 373

Query: 379 SKCGSITSSHQIFNEMAARDFVS-WTTLISGYGFHG---YGEEALQLFLEMQES 428
            +   +  +  +   M  R  V+ W +L++    HG    GE A +  LE+  +
Sbjct: 374 GRAKLMQEAVDLIESMHIRPNVAIWGSLLAACWMHGDIELGEFAAKKILELDPN 427



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 145/299 (48%), Gaps = 28/299 (9%)

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D V S +++  YAK  K E A  +F+ M  +D +SW+++I+ + +N      L +F +M 
Sbjct: 159 DLVSSTAMVCGYAKNGKIEIARSIFNHMAEKDVVSWSAMISAYAENNQPSEVLNLFNKMQ 218

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
            CG       +  +IS C+ IG L+  R IH++V   G +++ + +  AL+D++SKC   
Sbjct: 219 GCGVSPDEITMLSVISACANIGSLDKARWIHSIVGNHGFYKI-LSICNALIDMFSKCGSL 277

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
            +AL +F  M  +N ++WT+MI+      +  + + LF  M+ EGV+P  VT  ++L AC
Sbjct: 278 TLALNMFNAMPRKNVITWTSMIAAFAMHGDGPSALTLFGQMKGEGVEPNGVTFLVLLYAC 337

Query: 242 AELRDLRNGKAI-------------HGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
                +  G+++             H + Y C  D      A LM    +  E++H    
Sbjct: 338 CHAGLVYEGRSLFECMLQEYRIEPKHEH-YGCMVDLMGR--AKLMQEAVDLIESMHIR-- 392

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQS 347
                   +V IW S++      GD+   +  F+  ++  ++PN      +LS+   +S
Sbjct: 393 -------PNVAIWGSLLAACWMHGDIE--LGEFAAKKILELDPNHDGAYVLLSNIHAKS 442


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 167/535 (31%), Positives = 282/535 (52%), Gaps = 45/535 (8%)

Query: 86  FDEMPY----------RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
           FD  PY           + + WN+++  +  +   V +L+++  M   G +  +     +
Sbjct: 13  FDGFPYAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFL 72

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSK--------------CHHW 181
           +  C++    E G+QIH  V+  G +E  ++V T+L+ +Y++               H  
Sbjct: 73  LKSCAKSKAFEEGQQIHGHVLKLG-YEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRD 131

Query: 182 LI-----------------ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR 224
           ++                 A  +F+++ +++ VSW AMISG  ++ +Y   ++LF+ M +
Sbjct: 132 VVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMK 191

Query: 225 EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
             V+P   T+  VL ACA+ R +  G+ +H +    GF  +  +  AL+ +Y +C + + 
Sbjct: 192 TNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQ-VE 250

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
            A  +FE    KDVV W+++I GY+      EA+ LF  M      PN VT+++IL +C 
Sbjct: 251 TACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACA 310

Query: 345 RQSFLSHGLGVHCYIMKA--GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSW 402
               +  G  +H YI K    +    S+  +L++MY+KCG I ++HQ+FN M  +   SW
Sbjct: 311 HLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSW 370

Query: 403 TTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462
             +I G+  HG       LF  M+++G+EPD IT + +LSAC+H+G +     +F ++ +
Sbjct: 371 NAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQ 430

Query: 463 EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAE 522
           +  I   +EHY C +DLLG SG  ++A +++ TMPM+P   I  SL+ ACR HG LE+AE
Sbjct: 431 DYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAE 490

Query: 523 MLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
             A  L++ EPEN  +Y LLS + + +G W    +V  ++  KG+ K  G S IE
Sbjct: 491 SFARNLMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIE 545



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 144/519 (27%), Positives = 241/519 (46%), Gaps = 77/519 (14%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE- 80
           GL  N+   P ++K+CA ++  +  G Q+H   LK G + D  +  SLISMYA+  + E 
Sbjct: 61  GLLPNSYTFPFLLKSCAKSKAFEE-GQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLED 119

Query: 81  ------------------------------SAYQLFDEMPYRDTISWNSIINCFTQNGFY 110
                                         SA ++FDE+P +D +SWN++I+ + + G Y
Sbjct: 120 AHKVFDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSY 179

Query: 111 VRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTA 170
             +LE+F+EM           +  ++S C+Q   +ELGRQ+H+  I D  F  ++ +  A
Sbjct: 180 KEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSW-IDDHGFGSNLKIVNA 238

Query: 171 LLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPT 230
           L+DLYSKC     A  +FE +  ++ VSW  +I G      Y   + LF+ M R G  P 
Sbjct: 239 LIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPN 298

Query: 231 RVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDH--HLSAALMHMYCECTEALHPARI 288
            VT+  +L ACA L  +  G+ IH Y      D  +   L  +L+ MY +C + +  A  
Sbjct: 299 DVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGD-IEAAHQ 357

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
           +F     K +  W+++I G++  G  +    LFSRMR   IEP+ +T + +LS+C+    
Sbjct: 358 VFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGK 417

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
           L   LG H +                        S+T  + I  ++       +  +I  
Sbjct: 418 LD--LGRHIF-----------------------KSMTQDYDITPKLE-----HYGCMIDL 447

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468
            G  G  +EA ++   M    +EPD +   ++L AC   G ++ AE+   N+MK     +
Sbjct: 448 LGHSGLFKEAKEMIKTMP---MEPDGVIWCSLLKACRRHGNLELAESFARNLMK-----V 499

Query: 469 AIEHYACYV---DLLGKSGKIEDACKVVSTMPMKPSTRI 504
             E+   YV   ++   +G+ ++  KV + +  K   ++
Sbjct: 500 EPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKV 538



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/343 (27%), Positives = 171/343 (49%), Gaps = 21/343 (6%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           Y++ L L+K E+  + +  +   + +V+ ACA +++ +  G Q+H      G  ++  I 
Sbjct: 179 YKEALELFK-EMMKTNVRPDEGTMVTVLSACAQSRSVE-LGRQVHSWIDDHGFGSNLKIV 236

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           N+LI +Y+K  + E+A  LF+ +  +D +SWN++I  +T    Y  +L +F+EM   G  
Sbjct: 237 NALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGES 296

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFEL---SVFVSTALLDLYSKCHHWLI 183
                +  I+  C+ +G +++GR IH  V +D   +    +  + T+L+D+Y+KC     
Sbjct: 297 PNDVTIVSILPACAHLGAIDIGRWIH--VYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEA 354

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
           A +VF  M+ ++  SW AMI G       + G DLF  M++ G++P  +T   +L AC+ 
Sbjct: 355 AHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSH 414

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK------D 297
              L  G+ I           D+ ++  L H  C      H       +  +K      D
Sbjct: 415 SGKLDLGRHIFK-----SMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPD 469

Query: 298 VVIWSSIIRGYSQSGDLSEAMKLFSR--MRLERIEPNSVTLLA 338
            VIW S+++   + G+L E  + F+R  M++E   P S  LL+
Sbjct: 470 GVIWCSLLKACRRHGNL-ELAESFARNLMKVEPENPGSYVLLS 511


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 175/524 (33%), Positives = 291/524 (55%), Gaps = 26/524 (4%)

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +L SM+ K+    S Y            SWNSII  F ++G  +++L  F  M       
Sbjct: 37  NLRSMFGKYVDKTSVY------------SWNSIIADFARSGDSLQALYAFSSMRKLSLHP 84

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
                   I  CS + +L  G+QIH    V G +   +FV++AL+D+YSKC +   A ++
Sbjct: 85  NRSTFPCTIKSCSSLYDLCAGKQIHQQAFVFG-YGSDIFVASALIDMYSKCGYLNDARKL 143

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRA-----------MQREGVKPTRVTLTI 236
           F+++  RN VSWT+MISG + ++     + LF+            +   GV    V L  
Sbjct: 144 FDEIPERNVVSWTSMISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGC 203

Query: 237 VLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK 296
           V+ ACA +      + +HG A   GF+    +   LM  Y +C E +  +R +F+  +  
Sbjct: 204 VISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGE-ISVSRKVFDGMEET 262

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRM-RLERIEPNSVTLLAILSSCTRQSFLSHGLGV 355
           DV  W+S+I  Y+Q+G   EA  LFS M +   +  N+VTL A+L +C     L  G  +
Sbjct: 263 DVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCI 322

Query: 356 HCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYG 415
           H  ++K  L  ++ +G ++++MY KCG +  + + F+ +  ++  SWT +++GYG HG+G
Sbjct: 323 HDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHG 382

Query: 416 EEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC 475
           +EA+++F EM   G++P+ IT +++L+AC+HAGL+KE    FN +  E  +   IEHY+C
Sbjct: 383 KEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSC 442

Query: 476 YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPEN 535
            VDLLG++G +++A  ++  M +KP   +  SL+ ACRIH  +E+ E+ A +L + +P N
Sbjct: 443 MVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFKLDPSN 502

Query: 536 AANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIENE 579
              Y LLS + +++G W   E +  +M+  GL K+ G+S +E++
Sbjct: 503 CGYYVLLSNIYADAGRWDDVERMRILMKNHGLLKTPGYSIVEHK 546



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 119/417 (28%), Positives = 204/417 (48%), Gaps = 28/417 (6%)

Query: 13  LYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISM 72
           + K  LHP     N +  P  IK+C+ +      G Q+H  A   G  +D  ++++LI M
Sbjct: 77  MRKLSLHP-----NRSTFPCTIKSCS-SLYDLCAGKQIHQQAFVFGYGSDIFVASALIDM 130

Query: 73  YAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG-------- 124
           Y+K      A +LFDE+P R+ +SW S+I+ + QN     ++ +F+E  L          
Sbjct: 131 YSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREAVFLFKEFLLVDETDYDEIV 190

Query: 125 ---FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
                + + LL  +IS C+++    +   +H L +  G FE  + V   L+D Y+KC   
Sbjct: 191 GVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKG-FEGCLAVGNTLMDAYAKCGEI 249

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG-VKPTRVTLTIVLLA 240
            ++ +VF+ M   +  SW ++I+    +        LF  M + G V+   VTL+ VLLA
Sbjct: 250 SVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLA 309

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
           CA    L+ GK IH        + +  +  +++ MYC+C   +  AR  F+R K K+V  
Sbjct: 310 CAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGR-VEMARKAFDRLKRKNVKS 368

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           W+ ++ GY   G   EAMK+F  M    I+PN +T +++L++C+    L  G     +  
Sbjct: 369 WTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWH---WFN 425

Query: 361 KAGLNFDVSIG----NALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFH 412
           K    FDV  G    + ++++  + G +  ++ +  EM  + DF+ W +L+     H
Sbjct: 426 KMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGACRIH 482


>gi|356534091|ref|XP_003535591.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
           chloroplastic-like [Glycine max]
          Length = 903

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 166/571 (29%), Positives = 306/571 (53%), Gaps = 4/571 (0%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           +V    + + L LY + +  +G+Y N      ++   ++    + +G  LH   +  G +
Sbjct: 193 LVETSKWSEALQLYVKMIE-AGIYPNEFTFVKLLGMPSFLGLGKGYGKVLHSQLITFGVE 251

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
            + ++  ++I MYAK  + E A ++  + P  D   W SII+ F QN     ++    +M
Sbjct: 252 MNLMLKTAIICMYAKCRRMEDAIKVSQQTPKYDVCLWTSIISGFVQNSQVREAVNALVDM 311

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
            L G +      A +++  S +  LELG Q H+ VI+ G  E  ++V  AL+D+Y KC H
Sbjct: 312 ELSGILPNNFTYASLLNASSSVLSLELGEQFHSRVIMVG-LEGDIYVGNALVDMYMKCSH 370

Query: 181 WLI-ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLL 239
                ++ F  + + N +SWT++I+G  +    +  + LF  MQ  GV+P   TL+ +L 
Sbjct: 371 TTTNGVKAFRGIALPNVISWTSLIAGFAEHGFEEESVQLFAEMQAAGVQPNSFTLSTILG 430

Query: 240 ACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVV 299
           AC++++ +   K +HGY      D D  +  AL+  Y     A   A  +      +D++
Sbjct: 431 ACSKMKSIIQTKKLHGYIIKTQVDIDMAVGNALVDAYAGGGMA-DEAWSVIGMMNHRDII 489

Query: 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
            ++++    +Q GD   A+++ + M  + ++ +  +L + +S+      +  G  +HCY 
Sbjct: 490 TYTTLAARLNQQGDHEMALRVITHMCNDEVKMDEFSLASFISAAAGLGIMETGKQLHCYS 549

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEAL 419
            K+G     S+ N+L++ YSKCGS+  ++++F ++   D VSW  LISG   +G   +AL
Sbjct: 550 FKSGFERCNSVSNSLVHSYSKCGSMRDAYRVFKDITEPDRVSWNGLISGLASNGLISDAL 609

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479
             F +M+ +GV+PD++T L+++ AC+   L+ +    F ++ K   I   ++HY C VDL
Sbjct: 610 SAFDDMRLAGVKPDSVTFLSLIFACSQGSLLNQGLDYFYSMEKTYHITPKLDHYVCLVDL 669

Query: 480 LGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANY 539
           LG+ G++E+A  V+ TMP KP + I  +L++AC +HG + + E +A + +E +P + A Y
Sbjct: 670 LGRGGRLEEAMGVIETMPFKPDSVIYKTLLNACNLHGNVPLGEDMARRCLELDPCDPAIY 729

Query: 540 TLLSMVCSESGNWLGAEEVWRVMRAKGLSKS 570
            LL+ +   +G     ++  ++MR +GL +S
Sbjct: 730 LLLASLYDNAGLPDFGDKTRKLMRERGLRRS 760



 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 143/454 (31%), Positives = 240/454 (52%), Gaps = 9/454 (1%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G  +H   +K G   D  +SN+L+ +YAK      A  LFDEMP+RD +SW ++++  T+
Sbjct: 35  GACVHSPIIKVGLQHDLYLSNNLLCLYAKCFGVGQARHLFDEMPHRDVVSWTTLLSAHTR 94

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           N  +  +L++F  M   G       L+  +  CS +GE E G +IHA V+  G  EL+  
Sbjct: 95  NKHHFEALQLFDMMLGSGQCPNEFTLSSALRSCSALGEFEFGAKIHASVVKLG-LELNHV 153

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           + T L+DLY+KC   +   ++   +   + VSWT MIS  +++  +   + L+  M   G
Sbjct: 154 LGTTLVDLYTKCDCTVEPHKLLAFVKDGDVVSWTTMISSLVETSKWSEALQLYVKMIEAG 213

Query: 227 VKPTRVTLTIVLLACAELRDLRN--GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
           + P   T  + LL       L    GK +H      G + +  L  A++ MY +C   + 
Sbjct: 214 IYPNEFTF-VKLLGMPSFLGLGKGYGKVLHSQLITFGVEMNLMLKTAIICMYAKCRR-ME 271

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
            A  + ++T   DV +W+SII G+ Q+  + EA+     M L  I PN+ T  ++L++ +
Sbjct: 272 DAIKVSQQTPKYDVCLWTSIISGFVQNSQVREAVNALVDMELSGILPNNFTYASLLNASS 331

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSH-QIFNEMAARDFVSWT 403
               L  G   H  ++  GL  D+ +GNAL++MY KC   T++  + F  +A  + +SWT
Sbjct: 332 SVLSLELGEQFHSRVIMVGLEGDIYVGNALVDMYMKCSHTTTNGVKAFRGIALPNVISWT 391

Query: 404 TLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKE 463
           +LI+G+  HG+ EE++QLF EMQ +GV+P++ T+  IL AC+    + + + L   ++K 
Sbjct: 392 SLIAGFAEHGFEEESVQLFAEMQAAGVQPNSFTLSTILGACSKMKSIIQTKKLHGYIIKT 451

Query: 464 K-KIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
           +  I +A+ +    VD     G  ++A  V+  M
Sbjct: 452 QVDIDMAVGN--ALVDAYAGGGMADEAWSVIGMM 483



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 113/455 (24%), Positives = 229/455 (50%), Gaps = 5/455 (1%)

Query: 3   SKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDAD 62
           +KH +E  L L+   L  SG   N   L S +++C+ A     FG ++H + +K G + +
Sbjct: 95  NKHHFE-ALQLFDMMLG-SGQCPNEFTLSSALRSCS-ALGEFEFGAKIHASVVKLGLELN 151

Query: 63  PVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL 122
            V+  +L+ +Y K       ++L   +   D +SW ++I+   +   +  +L+++ +M  
Sbjct: 152 HVLGTTLVDLYTKCDCTVEPHKLLAFVKDGDVVSWTTMISSLVETSKWSEALQLYVKMIE 211

Query: 123 CGFVLKAELLAGIISLCSQIGELE-LGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
            G          ++ + S +G  +  G+ +H+ +I  G  E+++ + TA++ +Y+KC   
Sbjct: 212 AGIYPNEFTFVKLLGMPSFLGLGKGYGKVLHSQLITFG-VEMNLMLKTAIICMYAKCRRM 270

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             A++V +Q    +   WT++ISG + +      ++    M+  G+ P   T   +L A 
Sbjct: 271 EDAIKVSQQTPKYDVCLWTSIISGFVQNSQVREAVNALVDMELSGILPNNFTYASLLNAS 330

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           + +  L  G+  H      G + D ++  AL+ MY +C+         F    + +V+ W
Sbjct: 331 SSVLSLELGEQFHSRVIMVGLEGDIYVGNALVDMYMKCSHTTTNGVKAFRGIALPNVISW 390

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           +S+I G+++ G   E+++LF+ M+   ++PNS TL  IL +C++   +     +H YI+K
Sbjct: 391 TSLIAGFAEHGFEEESVQLFAEMQAAGVQPNSFTLSTILGACSKMKSIIQTKKLHGYIIK 450

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
             ++ D+++GNAL++ Y+  G    +  +   M  RD +++TTL +     G  E AL++
Sbjct: 451 TQVDIDMAVGNALVDAYAGGGMADEAWSVIGMMNHRDIITYTTLAARLNQQGDHEMALRV 510

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETL 456
              M    V+ D  ++ + +SA    G+++  + L
Sbjct: 511 ITHMCNDEVKMDEFSLASFISAAAGLGIMETGKQL 545



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 151/323 (46%), Gaps = 15/323 (4%)

Query: 229 PTRVTLT-IVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPAR 287
           P R   T + +L+    + L+ G  +H      G   D +LS  L+ +Y +C   +  AR
Sbjct: 13  PCRFRETCLQVLSLCNSQTLKEGACVHSPIIKVGLQHDLYLSNNLLCLYAKCF-GVGQAR 71

Query: 288 IIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQS 347
            +F+    +DVV W++++  ++++    EA++LF  M      PN  TL + L SC+   
Sbjct: 72  HLFDEMPHRDVVSWTTLLSAHTRNKHHFEALQLFDMMLGSGQCPNEFTLSSALRSCSALG 131

Query: 348 FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLIS 407
               G  +H  ++K GL  +  +G  L+++Y+KC      H++   +   D VSWTT+IS
Sbjct: 132 EFEFGAKIHASVVKLGLELNHVLGTTLVDLYTKCDCTVEPHKLLAFVKDGDVVSWTTMIS 191

Query: 408 GYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIA 467
                    EALQL+++M E+G+ P+  T + +L   +  GL K     +  V+  + I 
Sbjct: 192 SLVETSKWSEALQLYVKMIEAGIYPNEFTFVKLLGMPSFLGLGKG----YGKVLHSQLIT 247

Query: 468 LAIEH----YACYVDLLGKSGKIEDACKVVSTMPMKPS---TRILSSLVSACRIHGRLEV 520
             +E         + +  K  ++EDA KV    P       T I+S  V   ++  R  V
Sbjct: 248 FGVEMNLMLKTAIICMYAKCRRMEDAIKVSQQTPKYDVCLWTSIISGFVQNSQV--REAV 305

Query: 521 AEMLAHQLIEAEPENAANYTLLS 543
             ++  +L    P N    +LL+
Sbjct: 306 NALVDMELSGILPNNFTYASLLN 328


>gi|449440359|ref|XP_004137952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Cucumis sativus]
          Length = 595

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 178/588 (30%), Positives = 302/588 (51%), Gaps = 54/588 (9%)

Query: 38  AYAQTHQH--------FGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEM 89
           AY +  QH         G QLH   + S    D  + + LIS Y+K      AY +F ++
Sbjct: 5   AYGRLIQHCTDHLFFRVGKQLHARLVLSSVVPDNFLGSKLISFYSKSGSIRDAYNVFGKI 64

Query: 90  PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG--------FVLKAELLAGIISLCSQ 141
           P ++  SWN+++  +T +  +   L++F  +            F +   L A + SL S 
Sbjct: 65  PRKNIFSWNALLISYTLHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCALKA-LASLFSN 123

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
            G   L +++H+ ++  G  E  +FV  AL+  YS+C   ++A  +F++M  R+ VSW A
Sbjct: 124 SG---LAKEVHSFILRRG-LEYDIFVVNALITFYSRCDELVLARIMFDRMPERDIVSWNA 179

Query: 202 MISGCIDSQNYDTGIDLFRAMQRE-GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
           M++G     +Y+   +LFR M     VKP  +T   VL ACA+  DL  G  +H +    
Sbjct: 180 MLAGYSQGGSYEKCKELFRVMLSSLEVKPNALTAVSVLQACAQSNDLIFGIEVHRFVNES 239

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
               D  L  A++ +Y +C  +L  AR +FE    KD + + S+I GY   G +++AM L
Sbjct: 240 QIKMDVSLWNAVIGLYAKCG-SLDYARELFEEMLEKDAITYCSMISGYMVHGFVNQAMDL 298

Query: 321 FSRMRLERI-------------------------------EPNSVTLLAILSSCTRQSFL 349
           F      R+                                PN+VTL +IL   +  S L
Sbjct: 299 FREQERPRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFSTL 358

Query: 350 SHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGY 409
             G  +H Y ++   + ++ +  A+++ Y+KCG +  +  +F+++  R  ++WT++IS Y
Sbjct: 359 KGGKEIHGYAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSLIAWTSIISAY 418

Query: 410 GFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA 469
             HG    AL LF EM  +G++PD +T  ++L+AC H+G + EA  +FN ++ E  I   
Sbjct: 419 AVHGDANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELDEAWKIFNVLLPEYGIQPL 478

Query: 470 IEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLI 529
           +EHYAC V +L ++GK+ DA + +S MP++P+ ++  +L++   + G +E+ + +  +L 
Sbjct: 479 VEHYACMVGVLSRAGKLSDAVEFISKMPLEPTAKVWGALLNGASVAGDVELGKYVFDRLF 538

Query: 530 EAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           E EPEN  NY +++ + S+SG W  A+ +  +M+   L K  G S IE
Sbjct: 539 EIEPENTGNYVIMANLYSQSGRWKDADTIRDLMKEVRLKKIPGNSWIE 586



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 121/469 (25%), Positives = 232/469 (49%), Gaps = 42/469 (8%)

Query: 34  IKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRD 93
           +KA A   ++     ++H   L+ G + D  + N+LI+ Y++  +   A  +FD MP RD
Sbjct: 114 LKALASLFSNSGLAKEVHSFILRRGLEYDIFVVNALITFYSRCDELVLARIMFDRMPERD 173

Query: 94  TISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAG--IISLCSQIGELELGRQI 151
            +SWN+++  ++Q G Y +  E+FR M L    +K   L    ++  C+Q  +L  G ++
Sbjct: 174 IVSWNAMLAGYSQGGSYEKCKELFRVM-LSSLEVKPNALTAVSVLQACAQSNDLIFGIEV 232

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV-------------- 197
           H  V  +   ++ V +  A++ LY+KC     A  +FE+M+ ++ +              
Sbjct: 233 HRFV-NESQIKMDVSLWNAVIGLYAKCGSLDYARELFEEMLEKDAITYCSMISGYMVHGF 291

Query: 198 -----------------SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
                            +W A+ISG + +   +  +D+FRAMQ  G +P  VTL  +L  
Sbjct: 292 VNQAMDLFREQERPRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASILPV 351

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
            +    L+ GK IHGYA    +D + +++ A++  Y +C   LH A+++F++ K + ++ 
Sbjct: 352 FSHFSTLKGGKEIHGYAIRNTYDRNIYVATAIIDSYAKCG-YLHGAQLVFDQIKGRSLIA 410

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           W+SII  Y+  GD + A+ LF  M    I+P+ VT  ++L++C     L     +   ++
Sbjct: 411 WTSIISAYAVHGDANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELDEAWKIFNVLL 470

Query: 361 -KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS-WTTLISGYGFHGYGEEA 418
            + G+   V     ++ + S+ G ++ + +  ++M        W  L++G    G  E  
Sbjct: 471 PEYGIQPLVEHYACMVGVLSRAGKLSDAVEFISKMPLEPTAKVWGALLNGASVAGDVELG 530

Query: 419 LQLFLEMQESGVEPDAITVLAILSAC-NHAGLVKEAETLFNNVMKEKKI 466
             +F  + E  +EP+      I++   + +G  K+A+T+  ++MKE ++
Sbjct: 531 KYVFDRLFE--IEPENTGNYVIMANLYSQSGRWKDADTI-RDLMKEVRL 576


>gi|296089801|emb|CBI39620.3| unnamed protein product [Vitis vinifera]
          Length = 591

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 154/451 (34%), Positives = 261/451 (57%), Gaps = 4/451 (0%)

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI-ALR 186
            A  ++ ++  C  +  L  GR +H L I  G  +  ++V  AL+D+Y+ C   +  A  
Sbjct: 92  NAFTISSVLKACKGMKCLSYGRLVHGLAIKHG-LDGFIYVDNALMDMYATCCVSMDDACM 150

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VF  + ++NEVSWT +I+G     +   G+ +FR M  E V+    + +I + AC  +  
Sbjct: 151 VFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSIGS 210

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
              G+ +H      GF+ +  +  +++ MYC C+      R  +E  + +D++ W+++I 
Sbjct: 211 HTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQ-RDLITWNTLIA 269

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           GY +S + +E++ +FS M  E   PN  T  +I+++C   +FL+ G  +H  I++ GL+ 
Sbjct: 270 GYERS-NPTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLDG 328

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           ++++ NAL++MYSKCG+I  SHQ+F  M+ RD VSWT ++ GYG HGYGEEA++LF +M 
Sbjct: 329 NLALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMV 388

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
            SG+ PD +  +AILSAC+HAGLV E    F  ++ +  I+   E Y C VDLLG++GK+
Sbjct: 389 RSGIRPDRVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRAGKV 448

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546
           E+A +++ +MP KP   +    + AC+ H    + ++ AH++++  P  A  Y +LS + 
Sbjct: 449 EEAYELIESMPFKPDECVWGPFLGACKAHTFPNLGKLAAHRILDLRPHMAGTYVMLSNIY 508

Query: 547 SESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +  G W     + ++M+  G  K  G S +E
Sbjct: 509 AADGKWGEFARLRKLMKRMGNKKETGRSWVE 539



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 116/421 (27%), Positives = 201/421 (47%), Gaps = 17/421 (4%)

Query: 13  LYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISM 72
           +  +EL P     N   + SV+KAC   +    +G  +H  A+K G D    + N+L+ M
Sbjct: 84  MMNEELDP-----NAFTISSVLKACKGMKCLS-YGRLVHGLAIKHGLDGFIYVDNALMDM 137

Query: 73  YAKFS-KPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAEL 131
           YA      + A  +F  +  ++ +SW ++I  +T        L +FR+M L    L    
Sbjct: 138 YATCCVSMDDACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFS 197

Query: 132 LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM 191
            +  +  C+ IG    G Q+HA V   G FE ++ V  ++LD+Y +C  +  A R F +M
Sbjct: 198 FSIAVRACTSIGSHTFGEQLHAAVTKHG-FESNLPVMNSILDMYCRCSCFSEANRYFYEM 256

Query: 192 VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGK 251
             R+ ++W  +I+G  +  N    + +F  M+ EG  P   T T ++ ACA L  L  G+
Sbjct: 257 NQRDLITWNTLIAG-YERSNPTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQ 315

Query: 252 AIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQS 311
            IHG     G D +  LS AL+ MY +C   +  +  +F     +D+V W++++ GY   
Sbjct: 316 QIHGRIIRRGLDGNLALSNALIDMYSKCGN-IADSHQVFGGMSRRDLVSWTAMMIGYGTH 374

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF--DVS 369
           G   EA++LF +M    I P+ V  +AILS+C+    +  GL  +  +M    N   D  
Sbjct: 375 GYGEEAVELFDKMVRSGIRPDRVVFMAILSACSHAGLVDEGL-RYFKLMVGDYNISPDQE 433

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLIS---GYGFHGYGEEALQLFLEM 425
           I   ++++  + G +  ++++   M  + D   W   +     + F   G+ A    L++
Sbjct: 434 IYGCVVDLLGRAGKVEEAYELIESMPFKPDECVWGPFLGACKAHTFPNLGKLAAHRILDL 493

Query: 426 Q 426
           +
Sbjct: 494 R 494



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 172/354 (48%), Gaps = 12/354 (3%)

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           MI+G     N+     +F  M  E + P   T++ VL AC  ++ L  G+ +HG A   G
Sbjct: 64  MIAGYTSCNNHTHAWMVFCEMMNEELDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKHG 123

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
            D   ++  ALM MY  C  ++  A ++F    +K+ V W+++I GY+   D    +++F
Sbjct: 124 LDGFIYVDNALMDMYATCCVSMDDACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVF 183

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
            +M LE +E N  +    + +CT     + G  +H  + K G   ++ + N++++MY +C
Sbjct: 184 RQMLLEEVELNPFSFSIAVRACTSIGSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRC 243

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
              + +++ F EM  RD ++W TLI+GY       E+L +F  M+  G  P+  T  +I+
Sbjct: 244 SCFSEANRYFYEMNQRDLITWNTLIAGYE-RSNPTESLYVFSMMESEGFSPNCFTFTSIM 302

Query: 442 SACNHAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPM 498
           +AC     +   + +   +++   +  +AL+       +D+  K G I D+ +V   M  
Sbjct: 303 AACATLAFLNCGQQIHGRIIRRGLDGNLALS----NALIDMYSKCGNIADSHQVFGGMSR 358

Query: 499 KPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLSMVCSESG 550
           +      ++++     HG  E A  L  +++ +   P+      +LS  CS +G
Sbjct: 359 RDLVS-WTAMMIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFMAILS-ACSHAG 410



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 93/199 (46%), Gaps = 3/199 (1%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           ++L+++   +   G   N     S++ ACA      + G Q+H   ++ G D +  +SN+
Sbjct: 278 ESLYVFSM-MESEGFSPNCFTFTSIMAACA-TLAFLNCGQQIHGRIIRRGLDGNLALSNA 335

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           LI MY+K      ++Q+F  M  RD +SW +++  +  +G+   ++E+F +M   G    
Sbjct: 336 LIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSGIRPD 395

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
             +   I+S CS  G ++ G +   L++ D +      +   ++DL  +      A  + 
Sbjct: 396 RVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRAGKVEEAYELI 455

Query: 189 EQMVIR-NEVSWTAMISGC 206
           E M  + +E  W   +  C
Sbjct: 456 ESMPFKPDECVWGPFLGAC 474


>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 684

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 169/542 (31%), Positives = 284/542 (52%), Gaps = 5/542 (0%)

Query: 38  AYAQTHQHFGLQLHCTALKS-GSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTIS 96
           A + +    G  +H   +K+  S   P ++N LI+MY+K   PESA  +    P R+ +S
Sbjct: 16  AISTSSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPARNVVS 75

Query: 97  WNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVI 156
           W S+++   QNG +  +L  F EM   G          +    + +     G+QIHAL +
Sbjct: 76  WTSLVSGLAQNGHFSTALFEFFEMRREGVAPNDFTFPCVFKAVASLRLPVTGKQIHALAV 135

Query: 157 VDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGI 216
             G   L VFV  +  D+Y K      A ++F+++  RN  +W A IS  +        I
Sbjct: 136 KCGRI-LDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAYISNSVTDGRPKEAI 194

Query: 217 DLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMY 276
           + F   +R G +P  +T    L AC++   L  G  +HG  +  GFD D  +   L+  Y
Sbjct: 195 EAFIEFRRIGGQPNSITFCGFLNACSDGLLLDLGMQMHGLVFRSGFDTDVSVYNGLIDFY 254

Query: 277 CECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTL 336
            +C + +  + IIF    +K+ V W S++  Y Q+ +  +A  L+ R R E +E +   +
Sbjct: 255 GKCKQ-IRSSEIIFAEMGMKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKEIVETSDFMI 313

Query: 337 LAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA 396
            ++LS+C   + L  G  +H + +KA +  ++ +G+AL++MY KCG I  S Q F+EM  
Sbjct: 314 SSVLSACAGMAGLELGRSIHAHAVKACVERNIFVGSALVDMYGKCGCIEDSEQAFDEMPE 373

Query: 397 RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV--EPDAITVLAILSACNHAGLVKEAE 454
           ++ V+  +LI GY   G  + AL LF +M   G    P+ +T +++LSAC+ AG V+   
Sbjct: 374 KNLVTLNSLIGGYAHQGQVDMALALFEDMAPRGCGPAPNYMTFVSLLSACSRAGAVENGM 433

Query: 455 TLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRI 514
            +F+++     I    EHY+C VD+LG++G +E A + +  MP+KP+  +  +L +ACR+
Sbjct: 434 KIFDSMKSTYGIEPGAEHYSCIVDMLGRAGMVEQAFEFIKKMPIKPTISVWGALQNACRM 493

Query: 515 HGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFS 574
           HG+  +  + A  L + +P+++ N+ LLS   + +G W  A  V   M+  G+ K  G+S
Sbjct: 494 HGKPHLGILAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREEMKGVGIKKGAGYS 553

Query: 575 RI 576
            I
Sbjct: 554 WI 555



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 129/445 (28%), Positives = 218/445 (48%), Gaps = 12/445 (2%)

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
           +L A+ L  ++        + LGR +HA ++         F++  L+++YSK  H   A 
Sbjct: 3   LLTADALGLLLKNAISTSSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESAR 62

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
            V      RN VSWT+++SG   + ++ T +  F  M+REGV P   T   V  A A LR
Sbjct: 63  LVLRLTPARNVVSWTSLVSGLAQNGHFSTALFEFFEMRREGVAPNDFTFPCVFKAVASLR 122

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
               GK IH  A  CG   D  +  +   MYC+ T     AR +F+    +++  W++ I
Sbjct: 123 LPVTGKQIHALAVKCGRILDVFVGCSAFDMYCK-TRLRDDARKLFDEIPERNLETWNAYI 181

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
                 G   EA++ F   R    +PNS+T    L++C+    L  G+ +H  + ++G +
Sbjct: 182 SNSVTDGRPKEAIEAFIEFRRIGGQPNSITFCGFLNACSDGLLLDLGMQMHGLVFRSGFD 241

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            DVS+ N L++ Y KC  I SS  IF EM  ++ VSW +L++ Y  +   E+A  L+L  
Sbjct: 242 TDVSVYNGLIDFYGKCKQIRSSEIIFAEMGMKNAVSWCSLVAAYVQNHEDEKASVLYLRS 301

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLLGK 482
           ++  VE     + ++LSAC     ++   ++  + +K   E+ I +     +  VD+ GK
Sbjct: 302 RKEIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERNIFVG----SALVDMYGK 357

Query: 483 SGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANY-TL 541
            G IED+ +    MP K +   L+SL+      G++++A  L   +       A NY T 
Sbjct: 358 CGCIEDSEQAFDEMPEK-NLVTLNSLIGGYAHQGQVDMALALFEDMAPRGCGPAPNYMTF 416

Query: 542 LSMV--CSESGNWLGAEEVWRVMRA 564
           +S++  CS +G      +++  M++
Sbjct: 417 VSLLSACSRAGAVENGMKIFDSMKS 441


>gi|413932453|gb|AFW67004.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 913

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 175/530 (33%), Positives = 278/530 (52%), Gaps = 11/530 (2%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           Q+H  A+++G  AD  I + LI +Y++     +A ++F  M   D + + S+++   +NG
Sbjct: 157 QVHSLAVRAGFAADAWIGSCLIELYSRCGSLRAAEEVFRRMEAPDVVGYTSLVSALCRNG 216

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVI-VDGSFELSVFV 167
              R++++  +M   G       +  +++ C +     +G QIH  ++ V GS   SV+ 
Sbjct: 217 ELARAVDVLCQMTRQGLQPNEHTMTSMLAECPR----GIGEQIHGYMLKVMGS--QSVYA 270

Query: 168 STALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV 227
           STAL+D YS+   +  A  VFE +  +N VSW +M+  CI     D  + +F  M  EGV
Sbjct: 271 STALIDFYSRYGDFGTAKTVFENLESKNVVSWCSMMQLCIRDGRLDDALRVFSEMISEGV 330

Query: 228 KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPAR 287
           +P     +I L AC  +     G+ IH  A       D  +S AL+ MY   +  +    
Sbjct: 331 QPNEFAFSIALSACGSVC---LGRQIHCSAIKRDLMTDIRVSNALLSMYGR-SGFVSELE 386

Query: 288 IIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQS 347
            +  + +  D+V W++ I    Q+G   +A+ L  +M  E   PN     + LSSC   +
Sbjct: 387 AVLGKIENPDLVSWTAAISANFQNGFSEKAVALLLQMHSEGFTPNDYAFSSGLSSCADLA 446

Query: 348 FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLIS 407
            L  G  +HC  +K G +F V  GNAL+NMYSKCG I S+   F+ M   D +SW +LI 
Sbjct: 447 LLHQGRQLHCLALKLGCDFKVCTGNALINMYSKCGRIGSARLAFDVMDTHDVMSWNSLIH 506

Query: 408 GYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIA 467
           G   HG    AL+ F EM  S   PD  T L++L  CNHAGLVKE ET F  +     + 
Sbjct: 507 GLAQHGDANLALETFSEMCSSDWRPDDSTFLSVLVGCNHAGLVKEGETFFRQMTDRYGLT 566

Query: 468 LAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQ 527
               HYAC +D+LG++G+  +A +++  MP +P   I  +L+++C++H  L++ ++ A +
Sbjct: 567 PTPSHYACMIDMLGRNGRFAEALRMIENMPFEPDVLIWKTLLASCKLHRNLDIGKLAADK 626

Query: 528 LIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           L+E    ++A+Y L+S + +    W  AE V R M   G+ K  G+S IE
Sbjct: 627 LMELSERDSASYVLMSNLYAMHEEWRDAERVRRRMDEIGVKKDAGWSWIE 676



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 108/375 (28%), Positives = 185/375 (49%), Gaps = 9/375 (2%)

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A  LFD MP ++ ++W + I+  T+NG    +  MF +M   G           ++ C+ 
Sbjct: 89  ALDLFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFADMLESGVAPNDFACNAALAACAA 148

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
            G L LG Q+H+L +  G F    ++ + L++LYS+C     A  VF +M   + V +T+
Sbjct: 149 AGALGLGEQVHSLAVRAG-FAADAWIGSCLIELYSRCGSLRAAEEVFRRMEAPDVVGYTS 207

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           ++S    +      +D+   M R+G++P   T+T +L  C   R +  G+ IHGY     
Sbjct: 208 LVSALCRNGELARAVDVLCQMTRQGLQPNEHTMTSMLAECP--RGI--GEQIHGYMLKVM 263

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
                + S AL+  Y    +    A+ +FE  + K+VV W S+++   + G L +A+++F
Sbjct: 264 GSQSVYASTALIDFYSRYGD-FGTAKTVFENLESKNVVSWCSMMQLCIRDGRLDDALRVF 322

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
           S M  E ++PN       LS+C        G  +HC  +K  L  D+ + NAL++MY + 
Sbjct: 323 SEMISEGVQPNEFAFSIALSACGSVCL---GRQIHCSAIKRDLMTDIRVSNALLSMYGRS 379

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
           G ++    +  ++   D VSWT  IS    +G+ E+A+ L L+M   G  P+     + L
Sbjct: 380 GFVSELEAVLGKIENPDLVSWTAAISANFQNGFSEKAVALLLQMHSEGFTPNDYAFSSGL 439

Query: 442 SACNHAGLVKEAETL 456
           S+C    L+ +   L
Sbjct: 440 SSCADLALLHQGRQL 454



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 157/309 (50%), Gaps = 17/309 (5%)

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
           AL +F++M  +N V+WT  ISGC  +   +    +F  M   GV P        L ACA 
Sbjct: 89  ALDLFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFADMLESGVAPNDFACNAALAACAA 148

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
              L  G+ +H  A   GF  D  + + L+ +Y  C  +L  A  +F R +  DVV ++S
Sbjct: 149 AGALGLGEQVHSLAVRAGFAADAWIGSCLIELYSRCG-SLRAAEEVFRRMEAPDVVGYTS 207

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG--VHCYIMK 361
           ++    ++G+L+ A+ +  +M  + ++PN  T+ ++L+ C R      G+G  +H Y++K
Sbjct: 208 LVSALCRNGELARAVDVLCQMTRQGLQPNEHTMTSMLAECPR------GIGEQIHGYMLK 261

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
              +  V    AL++ YS+ G   ++  +F  + +++ VSW +++      G  ++AL++
Sbjct: 262 VMGSQSVYASTALIDFYSRYGDFGTAKTVFENLESKNVVSWCSMMQLCIRDGRLDDALRV 321

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKE--AETLFNNVMKEKKIALAIEHYACYVDL 479
           F EM   GV+P+       LSAC    L ++     +  ++M + +++ A+      + +
Sbjct: 322 FSEMISEGVQPNEFAFSIALSACGSVCLGRQIHCSAIKRDLMTDIRVSNAL------LSM 375

Query: 480 LGKSGKIED 488
            G+SG + +
Sbjct: 376 YGRSGFVSE 384



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 122/254 (48%), Gaps = 31/254 (12%)

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
           +F+R   K+VV W++ I G +++G    A  +F+ M    + PN     A L++C     
Sbjct: 92  LFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFADMLESGVAPNDFACNAALAACAAAGA 151

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
           L  G  VH   ++AG   D  IG+ L+ +YS+CGS+ ++ ++F  M A D V +T+L+S 
Sbjct: 152 LGLGEQVHSLAVRAGFAADAWIGSCLIELYSRCGSLRAAEEVFRRMEAPDVVGYTSLVSA 211

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468
              +G    A+ +  +M   G++P+  T+ ++L+ C   G+ ++       VM  + +  
Sbjct: 212 LCRNGELARAVDVLCQMTRQGLQPNEHTMTSMLAECPR-GIGEQIHGYMLKVMGSQSVYA 270

Query: 469 A---IEHYACYVD------------------------LLGKSGKIEDACKVVSTM---PM 498
           +   I+ Y+ Y D                        L  + G+++DA +V S M    +
Sbjct: 271 STALIDFYSRYGDFGTAKTVFENLESKNVVSWCSMMQLCIRDGRLDDALRVFSEMISEGV 330

Query: 499 KPSTRILSSLVSAC 512
           +P+    S  +SAC
Sbjct: 331 QPNEFAFSIALSAC 344



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 6/157 (3%)

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           DV +    ++   K G +  +  +F+ M  ++ V+WTT ISG   +G  E A  +F +M 
Sbjct: 69  DVVLDCKRLDGLMKSGRLGDALDLFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFADML 128

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSG 484
           ESGV P+     A L+AC  AG +   E + +  +   +   A + +  +C ++L  + G
Sbjct: 129 ESGVAPNDFACNAALAACAAAGALGLGEQVHSLAV---RAGFAADAWIGSCLIELYSRCG 185

Query: 485 KIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA 521
            +  A +V   M   P     +SLVSA   +G L  A
Sbjct: 186 SLRAAEEVFRRME-APDVVGYTSLVSALCRNGELARA 221


>gi|147784524|emb|CAN61725.1| hypothetical protein VITISV_032420 [Vitis vinifera]
          Length = 763

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 177/507 (34%), Positives = 269/507 (53%), Gaps = 6/507 (1%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
             L  Y Q L  SG+  +     S+IKAC+ +      G QLH   LKS   A  +  N+
Sbjct: 147 NALEFYFQMLQ-SGVMPDQFTFGSIIKACS-SLGDIGLGRQLHAHVLKSEFGAHIIAQNA 204

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           LISMY K +    A  +F  M  RD ISW S+I  F+Q G+ + +L  F+EM   G  L 
Sbjct: 205 LISMYTKSNVIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLP 264

Query: 129 AELLAG-IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
            E + G + S CS + + E GRQ+H + I  G     VF   +L D+Y+KC     A  V
Sbjct: 265 NEFIFGSVFSACSSLLQPEYGRQLHGMSIKFG-LGRDVFAGCSLCDMYAKCGLLSCARVV 323

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F Q+   + V+W A+I+G     +    I  F  M+ +G+ P  +T+  +L AC    +L
Sbjct: 324 FYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSEL 383

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK-DVVIWSSIIR 306
             G  +HGY    G D D  +   L+ MY +C+E L  A   FE  +   D+V W++I+ 
Sbjct: 384 YQGMQVHGYINKMGLDLDVPVCNTLLTMYAKCSE-LRDAIFFFEEMRCNADLVSWNAILT 442

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
                    E   L   M + +  P+ +TL  +L +      +  G  VHCY +K GLN 
Sbjct: 443 ACMHHDQAEEVFGLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGLNC 502

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           D+S+ N L+++Y+KCGS+ ++ +IF+ +   D VSW++LI GY   GYGEEAL+LF  M+
Sbjct: 503 DISVTNGLIDLYAKCGSLKTARKIFDSVINPDVVSWSSLILGYAQFGYGEEALKLFKTMR 562

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
              V+P+ +T + +L+AC+H GLV+E   L+  + KE  I    EH +C VDLL ++G +
Sbjct: 563 RLDVKPNHVTFVGVLTACSHVGLVEEGWQLYGTMEKEFGIVPTREHCSCMVDLLARAGCL 622

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACR 513
            +A   +  M   P   +  +L++AC+
Sbjct: 623 NEAEAFIHQMAFDPDIVVWKTLLAACK 649



 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 163/533 (30%), Positives = 262/533 (49%), Gaps = 13/533 (2%)

Query: 33  VIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYR 92
           +I AC+Y ++ +H G ++H   LKS S  D  + N +++MY K    + A ++FD MP R
Sbjct: 69  LISACSYLRSLEH-GRKIHDHMLKSKSHPDLTLQNHILNMYGKCGSLKDAQKVFDAMPER 127

Query: 93  DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIH 152
           + +SW S+I  ++QNG    +LE + +M   G +        II  CS +G++ LGRQ+H
Sbjct: 128 NVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLH 187

Query: 153 ALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNY 212
           A V+    F   +    AL+ +Y+K +  + AL VF +M  R+ +SW +MI+G       
Sbjct: 188 AHVL-KSEFGAHIIAQNALISMYTKSNVIIDALDVFSRMATRDLISWGSMIAGFSQLGYE 246

Query: 213 DTGIDLFRAMQREGVK-PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAA 271
              +  F+ M  +GV  P       V  AC+ L     G+ +HG +   G   D     +
Sbjct: 247 LEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCS 306

Query: 272 LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP 331
           L  MY +C   L  AR++F +    D+V W++II G++  GD  EA+  FS+MR + + P
Sbjct: 307 LCDMYAKCG-LLSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIP 365

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIF 391
           + +T+ ++L +CT  S L  G+ VH YI K GL+ DV + N L+ MY+KC  +  +   F
Sbjct: 366 DEITVRSLLCACTSPSELYQGMQVHGYINKMGLDLDVPVCNTLLTMYAKCSELRDAIFFF 425

Query: 392 NEMAAR-DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLV 450
            EM    D VSW  +++    H   EE   L   M  S   PD IT+  +L A      +
Sbjct: 426 EEMRCNADLVSWNAILTACMHHDQAEEVFGLLKLMCISQHRPDYITLTNVLGASAETVSI 485

Query: 451 KEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVS 510
           +    +    +K   +   I      +DL  K G ++ A K+  ++ + P     SSL+ 
Sbjct: 486 EIGNQVHCYALK-TGLNCDISVTNGLIDLYAKCGSLKTARKIFDSV-INPDVVSWSSLIL 543

Query: 511 ACRIHGRLEVAEMLAHQL--IEAEPENAANYTLLSMVCSESGNWLGAEEVWRV 561
                G  E A  L   +  ++ +P N   +  +   CS  G     EE W++
Sbjct: 544 GYAQFGYGEEALKLFKTMRRLDVKP-NHVTFVGVLTACSHVGL---VEEGWQL 592



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 114/401 (28%), Positives = 202/401 (50%), Gaps = 12/401 (2%)

Query: 124 GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
           GF L     A +IS CS +  LE GR+IH  ++   S    + +   +L++Y KC     
Sbjct: 58  GFCLTLSTYAYLISACSYLRSLEHGRKIHDHMLKSKSHP-DLTLQNHILNMYGKCGSLKD 116

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
           A +VF+ M  RN VSWT++I+G   +      ++ +  M + GV P + T   ++ AC+ 
Sbjct: 117 AQKVFDAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSS 176

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSA--ALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           L D+  G+ +H  A+    +F  H+ A  AL+ MY + +  +  A  +F R   +D++ W
Sbjct: 177 LGDIGLGRQLH--AHVLKSEFGAHIIAQNALISMYTK-SNVIIDALDVFSRMATRDLISW 233

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIE-PNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
            S+I G+SQ G   EA+  F  M  + +  PN     ++ S+C+      +G  +H   +
Sbjct: 234 GSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSI 293

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
           K GL  DV  G +L +MY+KCG ++ +  +F ++   D V+W  +I+G+ + G  +EA+ 
Sbjct: 294 KFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIA 353

Query: 421 LFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC--YVD 478
            F +M+  G+ PD ITV ++L AC     + +   +   +    K+ L ++   C   + 
Sbjct: 354 FFSQMRHQGLIPDEITVRSLLCACTSPSELYQGMQVHGYI---NKMGLDLDVPVCNTLLT 410

Query: 479 LLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLE 519
           +  K  ++ DA      M         +++++AC  H + E
Sbjct: 411 MYAKCSELRDAIFFFEEMRCNADLVSWNAILTACMHHDQAE 451



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 134/255 (52%), Gaps = 3/255 (1%)

Query: 193 IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE-GVKPTRVTLTIVLLACAELRDLRNGK 251
           +R E S    I+     + ++  I  F  +Q++ G   T  T   ++ AC+ LR L +G+
Sbjct: 24  LRAEQSSNEYITTLCKQKLFNEAIKAFEFLQKKTGFCLTLSTYAYLISACSYLRSLEHGR 83

Query: 252 AIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQS 311
            IH +        D  L   +++MY +C  +L  A+ +F+    ++VV W+S+I GYSQ+
Sbjct: 84  KIHDHMLKSKSHPDLTLQNHILNMYGKCG-SLKDAQKVFDAMPERNVVSWTSVIAGYSQN 142

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
           G    A++ + +M    + P+  T  +I+ +C+    +  G  +H +++K+     +   
Sbjct: 143 GQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQ 202

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
           NAL++MY+K   I  +  +F+ MA RD +SW ++I+G+   GY  EAL  F EM   GV 
Sbjct: 203 NALISMYTKSNVIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVY 262

Query: 432 -PDAITVLAILSACN 445
            P+     ++ SAC+
Sbjct: 263 LPNEFIFGSVFSACS 277



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 124/230 (53%), Gaps = 15/230 (6%)

Query: 281 EALHPARIIFERTKVKDVVIWSSIIRGYSQSGD----------LSEAMKLFSRMRLERIE 330
           +AL P ++ F    VK+ V+  S +R    S +           +EA+K F  ++ +   
Sbjct: 3   KALRP-QVGFATNNVKETVL--SKLRAEQSSNEYITTLCKQKLFNEAIKAFEFLQKKTGF 59

Query: 331 PNSVTLLA-ILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
             +++  A ++S+C+    L HG  +H +++K+  + D+++ N ++NMY KCGS+  + +
Sbjct: 60  CLTLSTYAYLISACSYLRSLEHGRKIHDHMLKSKSHPDLTLQNHILNMYGKCGSLKDAQK 119

Query: 390 IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL 449
           +F+ M  R+ VSWT++I+GY  +G G  AL+ + +M +SGV PD  T  +I+ AC+  G 
Sbjct: 120 VFDAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGD 179

Query: 450 VKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           +     L  +V+K +  A  I   A  + +  KS  I DA  V S M  +
Sbjct: 180 IGLGRQLHAHVLKSEFGAHIIAQNA-LISMYTKSNVIIDALDVFSRMATR 228


>gi|357461615|ref|XP_003601089.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490137|gb|AES71340.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 745

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 183/598 (30%), Positives = 302/598 (50%), Gaps = 40/598 (6%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           + L LY + +       N  +  +V+KAC   +  +  G  +H    ++  D D V+ N+
Sbjct: 87  EALSLYNEMIESKIEQPNQFLYSAVLKACGLVRNVE-LGKMVHYHIFQAKLDVDIVLMNA 145

Query: 69  LISMYAK----------------------------FSKP---ESAYQLFDEMPYRDTISW 97
           L+ MY K                            ++K    + A +LFD+MP  D +SW
Sbjct: 146 LLDMYVKCGSLRDAQRVFCEIPCKNATSWNTLILGYAKQGLIDDAMKLFDKMPEPDIVSW 205

Query: 98  NSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIV 157
           NSII     N    R+L     M+  G  +       ++  C    EL LGR+IH  +I 
Sbjct: 206 NSIIAGLVDNA-SSRALRFVSMMHGKGLKMDEFTFPSVLKACGCSDELMLGREIHCYIIK 264

Query: 158 DGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS-----WTAMISGCIDSQNY 212
            G FE S +  +AL+D+YS C     A ++F+Q    + VS     W +M+SG + + +Y
Sbjct: 265 SG-FESSCYCISALIDMYSSCKLLSEATKIFDQYFRNSSVSESLALWNSMLSGHVVNGDY 323

Query: 213 DTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAAL 272
              + +   M R GV+    T +IVL  C    +L     +HG+    G++ D  + + L
Sbjct: 324 VEALSMISHMHRSGVRFDFYTFSIVLKICMNFDNLSLASQVHGFVITSGYELDCVVGSIL 383

Query: 273 MHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPN 332
           + +Y +   +++ A  +FER   KDVV WSS+I G ++ G    A  LF  M    ++ +
Sbjct: 384 IDIYAK-QGSINNALRLFERLPDKDVVAWSSLITGCARFGSDKLAFSLFMDMIHLGLQID 442

Query: 333 SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFN 392
              +  +L +C+  +   HG  VH   +K G   +  +  AL++MY+KCG I  +  +F 
Sbjct: 443 HFVISIVLKACSSLASHQHGKQVHSLCLKKGYESEGVVTTALIDMYAKCGDIEDALSLFG 502

Query: 393 EMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKE 452
            ++  D +SWT++I G   +G  EEA+ L  +M ESG +P+ IT+L +L+AC H+GLV+E
Sbjct: 503 CLSEIDTMSWTSIIVGCAQNGRAEEAISLLHKMIESGTKPNKITILGVLTACRHSGLVEE 562

Query: 453 AETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSAC 512
           A  +FN++     +    EHY C VD+LG++G+ E+A K++S MP KP   I SSL+ AC
Sbjct: 563 AWDVFNSIETNHGLIPCPEHYNCMVDILGQAGRFEEAVKLISEMPFKPDKTIWSSLLGAC 622

Query: 513 RIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKS 570
             +   ++A ++A  L+   PE+ + Y +LS V +  G W    +V   ++  G  ++
Sbjct: 623 GTYKNRDLANIVAEHLLATSPEDVSVYIMLSNVYAALGMWDSVSKVRETVKKIGKKRA 680



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 146/553 (26%), Positives = 258/553 (46%), Gaps = 46/553 (8%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           LH   +KSG      I N++IS+Y+K S    A  +FDEMP+R+ +SW ++++  T +  
Sbjct: 25  LHSHIIKSGFCNHIFILNNMISVYSKCSSIIDARNMFDEMPHRNIVSWTTMVSVLTNSSM 84

Query: 110 YVRSLEMFREMYLCGFVLKAELL-AGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
              +L ++ EM         + L + ++  C  +  +ELG+ +H   I     ++ + + 
Sbjct: 85  PHEALSLYNEMIESKIEQPNQFLYSAVLKACGLVRNVELGKMVH-YHIFQAKLDVDIVLM 143

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR---- 224
            ALLD+Y KC     A RVF ++  +N  SW  +I G       D  + LF  M      
Sbjct: 144 NALLDMYVKCGSLRDAQRVFCEIPCKNATSWNTLILGYAKQGLIDDAMKLFDKMPEPDIV 203

Query: 225 --------------------------EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258
                                     +G+K    T   VL AC    +L  G+ IH Y  
Sbjct: 204 SWNSIIAGLVDNASSRALRFVSMMHGKGLKMDEFTFPSVLKACGCSDELMLGREIHCYII 263

Query: 259 CCGFDFDHHLSAALMHMYCECTEALHPARIIFER-----TKVKDVVIWSSIIRGYSQSGD 313
             GF+   +  +AL+ MY  C + L  A  IF++     +  + + +W+S++ G+  +GD
Sbjct: 264 KSGFESSCYCISALIDMYSSC-KLLSEATKIFDQYFRNSSVSESLALWNSMLSGHVVNGD 322

Query: 314 LSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNA 373
             EA+ + S M    +  +  T   +L  C     LS    VH +++ +G   D  +G+ 
Sbjct: 323 YVEALSMISHMHRSGVRFDFYTFSIVLKICMNFDNLSLASQVHGFVITSGYELDCVVGSI 382

Query: 374 LMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPD 433
           L+++Y+K GSI ++ ++F  +  +D V+W++LI+G    G  + A  LF++M   G++ D
Sbjct: 383 LIDIYAKQGSINNALRLFERLPDKDVVAWSSLITGCARFGSDKLAFSLFMDMIHLGLQID 442

Query: 434 AITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVV 493
              +  +L AC+     +  + + +  +K+   +  +   A  +D+  K G IEDA  + 
Sbjct: 443 HFVISIVLKACSSLASHQHGKQVHSLCLKKGYESEGVVTTA-LIDMYAKCGDIEDALSLF 501

Query: 494 STMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLSMVCSESGN 551
             +  +  T   +S++  C  +GR E A  L H++IE+  +P       +L+  C  SG 
Sbjct: 502 GCLS-EIDTMSWTSIIVGCAQNGRAEEAISLLHKMIESGTKPNKITILGVLT-ACRHSG- 558

Query: 552 WLGAEEVWRVMRA 564
               EE W V  +
Sbjct: 559 --LVEEAWDVFNS 569



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 120/223 (53%), Gaps = 11/223 (4%)

Query: 234 LTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERT 293
           + I    C   R ++N K++H +    GF     +   ++ +Y +C+  +  AR +F+  
Sbjct: 6   IQIAFRYCIRFRSIKNAKSLHSHIIKSGFCNHIFILNNMISVYSKCSSII-DARNMFDEM 64

Query: 294 KVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE-PNSVTLLAILSSCTRQSFLSHG 352
             +++V W++++   + S    EA+ L++ M   +IE PN     A+L +C     +  G
Sbjct: 65  PHRNIVSWTTMVSVLTNSSMPHEALSLYNEMIESKIEQPNQFLYSAVLKACGLVRNVELG 124

Query: 353 LGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFH 412
             VH +I +A L+ D+ + NAL++MY KCGS+  + ++F E+  ++  SW TLI GY   
Sbjct: 125 KMVHYHIFQAKLDVDIVLMNALLDMYVKCGSLRDAQRVFCEIPCKNATSWNTLILGYAKQ 184

Query: 413 GYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAET 455
           G  ++A++LF +M     EPD ++  +I+     AGLV  A +
Sbjct: 185 GLIDDAMKLFDKMP----EPDIVSWNSII-----AGLVDNASS 218


>gi|15228265|ref|NP_190368.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207726|sp|Q9STS9.1|PP268_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g47840
 gi|4741201|emb|CAB41867.1| putative protein [Arabidopsis thaliana]
 gi|332644818|gb|AEE78339.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 706

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 174/552 (31%), Positives = 291/552 (52%), Gaps = 3/552 (0%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           +T++L  V+KAC  + ++  +G  LH  A+K+   +   + +SL+ MY +  K + + ++
Sbjct: 107 DTSVLSVVLKACGQS-SNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKIDKSCRV 165

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL 145
           F EMP+R+ ++W +II      G Y   L  F EM     +      A  +  C+ + ++
Sbjct: 166 FSEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAGLRQV 225

Query: 146 ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISG 205
           + G+ IH  VIV G F  ++ V+ +L  +Y++C      L +FE M  R+ VSWT++I  
Sbjct: 226 KYGKAIHTHVIVRG-FVTTLCVANSLATMYTECGEMQDGLCLFENMSERDVVSWTSLIVA 284

Query: 206 CIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFD 265
                     ++ F  M+   V P   T   +  ACA L  L  G+ +H      G +  
Sbjct: 285 YKRIGQEVKAVETFIKMRNSQVPPNEQTFASMFSACASLSRLVWGEQLHCNVLSLGLNDS 344

Query: 266 HHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR 325
             +S ++M MY  C   L  A ++F+  + +D++ WS+II GY Q+G   E  K FS MR
Sbjct: 345 LSVSNSMMKMYSTCGN-LVSASVLFQGMRCRDIISWSTIIGGYCQAGFGEEGFKYFSWMR 403

Query: 326 LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSIT 385
               +P    L ++LS     + +  G  VH   +  GL  + ++ ++L+NMYSKCGSI 
Sbjct: 404 QSGTKPTDFALASLLSVSGNMAVIEGGRQVHALALCFGLEQNSTVRSSLINMYSKCGSIK 463

Query: 386 SSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
            +  IF E    D VS T +I+GY  HG  +EA+ LF +  + G  PD++T +++L+AC 
Sbjct: 464 EASMIFGETDRDDIVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFRPDSVTFISVLTACT 523

Query: 446 HAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRIL 505
           H+G +      FN + +   +  A EHY C VDLL ++G++ DA K+++ M  K    + 
Sbjct: 524 HSGQLDLGFHYFNMMQETYNMRPAKEHYGCMVDLLCRAGRLSDAEKMINEMSWKKDDVVW 583

Query: 506 SSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAK 565
           ++L+ AC+  G +E     A +++E +P  A     L+ + S +GN   A  V + M+AK
Sbjct: 584 TTLLIACKAKGDIERGRRAAERILELDPTCATALVTLANIYSSTGNLEEAANVRKNMKAK 643

Query: 566 GLSKSYGFSRIE 577
           G+ K  G+S I+
Sbjct: 644 GVIKEPGWSSIK 655



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 146/322 (45%), Gaps = 23/322 (7%)

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
           FD + HL + +          L  AR +F++    D+V W+SII+ Y  + +  EA+ LF
Sbjct: 41  FDPNSHLRSLIN------AGNLRAARQVFDKMPHGDIVSWTSIIKRYVTANNSDEALILF 94

Query: 322 SRMRL--ERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           S MR+    + P++  L  +L +C + S +++G  +H Y +K  L   V +G++L++MY 
Sbjct: 95  SAMRVVDHAVSPDTSVLSVVLKACGQSSNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYK 154

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           + G I  S ++F+EM  R+ V+WT +I+G    G  +E L  F EM  S    D  T   
Sbjct: 155 RVGKIDKSCRVFSEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAI 214

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKI-------ALAIEHYACYVDLLGKSGKIEDACKV 492
            L AC     VK  + +  +V+    +       +LA  +  C        G+++D   +
Sbjct: 215 ALKACAGLRQVKYGKAIHTHVIVRGFVTTLCVANSLATMYTEC--------GEMQDGLCL 266

Query: 493 VSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNW 552
              M  +      S +V+  RI   ++  E          P N   +  +   C+     
Sbjct: 267 FENMSERDVVSWTSLIVAYKRIGQEVKAVETFIKMRNSQVPPNEQTFASMFSACASLSRL 326

Query: 553 LGAEEVWRVMRAKGLSKSYGFS 574
           +  E++   + + GL+ S   S
Sbjct: 327 VWGEQLHCNVLSLGLNDSLSVS 348


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 160/508 (31%), Positives = 278/508 (54%), Gaps = 26/508 (5%)

Query: 94  TISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHA 153
           +++W  II C+  +G    SL  F  +   G      L   ++   +      L + +HA
Sbjct: 41  SLAWICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRASTLFKHFNLAQSLHA 100

Query: 154 LVIVDGSFELSVFVSTALLDLYSKCHHWLIAL----------------------RVFEQM 191
            VI  G F   ++ + AL+++YSK H  L  L                      ++F++M
Sbjct: 101 AVIRLG-FHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDRM 159

Query: 192 VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGK 251
            +R+ VSW  +I+G   +  Y+  +++ + M +E ++P   TL+ +L    E  ++  GK
Sbjct: 160 PVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKGK 219

Query: 252 AIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQS 311
            IHGYA   GFD D  + ++L+ MY +CT+ +  +   F     +D + W+SII G  Q+
Sbjct: 220 EIHGYAIRHGFDKDVFIGSSLIDMYAKCTQ-VELSVCAFHLLSNRDAISWNSIIAGCVQN 278

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
           G   + +  F RM  E+++P  V+  +++ +C   + L+ G  +H YI++ G + +  I 
Sbjct: 279 GRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIA 338

Query: 372 NALMNMYSKCGSITSSHQIFN--EMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
           ++L++MY+KCG+I  +  IFN  EM  RD VSWT +I G   HG+  +A+ LF EM   G
Sbjct: 339 SSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDG 398

Query: 430 VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
           V+P  +  +A+L+AC+HAGLV E    FN++ ++  +A  +EHYA   DLLG++G++E+A
Sbjct: 399 VKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAVADLLGRAGRLEEA 458

Query: 490 CKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSES 549
              +S M  +P+  + S+L++ACR H  +E+AE + ++++  +P N   + ++S + S +
Sbjct: 459 YDFISNMGEEPTGSVWSTLLAACRAHKNIELAEKVVNKILLVDPGNMGAHVIMSNIYSAA 518

Query: 550 GNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
             W  A ++   MR  GL K+   S IE
Sbjct: 519 QRWRDAAKLRVRMRKTGLKKTPACSWIE 546



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 119/418 (28%), Positives = 217/418 (51%), Gaps = 39/418 (9%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGL--QLHCTALKSGSDADPVISNSLISMYAKFS-- 77
           G+  +  + PS+++A   +   +HF L   LH   ++ G   D   +N+L++MY+KF   
Sbjct: 71  GISPDRHLFPSLLRA---STLFKHFNLAQSLHAAVIRLGFHFDLYTANALMNMYSKFHPH 127

Query: 78  --------------------KPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMF 117
                               K +S  +LFD MP RD +SWN++I    QNG Y  +L M 
Sbjct: 128 LSPLHEFPQARHNHNNKYSVKIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMV 187

Query: 118 REMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSK 177
           +EM        +  L+ I+ + ++   +  G++IH   I  G F+  VF+ ++L+D+Y+K
Sbjct: 188 KEMGKENLRPDSFTLSSILPIFTEHANVTKGKEIHGYAIRHG-FDKDVFIGSSLIDMYAK 246

Query: 178 CHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIV 237
           C    +++  F  +  R+ +SW ++I+GC+ +  +D G+  FR M +E VKP +V+ + V
Sbjct: 247 CTQVELSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSV 306

Query: 238 LLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV-- 295
           + ACA L  L  GK +H Y    GFD +  ++++L+ MY +C   +  AR IF + ++  
Sbjct: 307 IPACAHLTALNLGKQLHAYIIRLGFDDNKFIASSLLDMYAKCGN-IKMARYIFNKIEMCD 365

Query: 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV 355
           +D+V W++II G +  G   +A+ LF  M ++ ++P  V  +A+L++C+    +  G   
Sbjct: 366 RDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWK- 424

Query: 356 HCYIMKAGLNFDVSIG----NALMNMYSKCGSITSSHQIFNEMAARDFVS-WTTLISG 408
             Y      +F V+ G     A+ ++  + G +  ++   + M      S W+TL++ 
Sbjct: 425 --YFNSMQRDFGVAPGLEHYAAVADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAA 480



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 101/349 (28%), Positives = 168/349 (48%), Gaps = 28/349 (8%)

Query: 7   YEQTLHLYKQ----ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDAD 62
           YE+ L++ K+     L P   ++ ++ILP   +     +     G ++H  A++ G D D
Sbjct: 180 YEEALNMVKEMGKENLRPDS-FTLSSILPIFTEHANVTK-----GKEIHGYAIRHGFDKD 233

Query: 63  PVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL 122
             I +SLI MYAK ++ E +   F  +  RD ISWNSII    QNG + + L  FR M  
Sbjct: 234 VFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLK 293

Query: 123 CGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL 182
                     + +I  C+ +  L LG+Q+HA +I  G F+ + F++++LLD+Y+KC +  
Sbjct: 294 EKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLG-FDDNKFIASSLLDMYAKCGNIK 352

Query: 183 IALRVFE--QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
           +A  +F   +M  R+ VSWTA+I GC    +    + LF  M  +GVKP  V    VL A
Sbjct: 353 MARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTA 412

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA-------RIIFERT 293
           C+       G    G+ Y      D  ++  L H Y    + L  A         I    
Sbjct: 413 CSHA-----GLVDEGWKYFNSMQRDFGVAPGLEH-YAAVADLLGRAGRLEEAYDFISNMG 466

Query: 294 KVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSS 342
           +     +WS+++       ++  A K+ +++ L  ++P ++    I+S+
Sbjct: 467 EEPTGSVWSTLLAACRAHKNIELAEKVVNKILL--VDPGNMGAHVIMSN 513



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 88/192 (45%), Gaps = 23/192 (11%)

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           A+I+         + W  II+ Y+  G L  ++  F+ +R   I P+     ++L + T 
Sbjct: 29  AQIVKTTKATPHSLAWICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRASTL 88

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK----------------------CGS 383
               +    +H  +++ G +FD+   NALMNMYSK                         
Sbjct: 89  FKHFNLAQSLHAAVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVK 148

Query: 384 ITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
           I S  ++F+ M  RD VSW T+I+G   +G  EEAL +  EM +  + PD+ T+ +IL  
Sbjct: 149 IDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPI 208

Query: 444 -CNHAGLVKEAE 454
              HA + K  E
Sbjct: 209 FTEHANVTKGKE 220


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 184/582 (31%), Positives = 313/582 (53%), Gaps = 28/582 (4%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHF-GLQLHCTALKSGSDADPVISN 67
           Q+L +   ++  +GL++    L  +I+ C  +    HF GL    +  ++  + + +I N
Sbjct: 4   QSLRMIHAQMIKTGLHNTNYALSKLIEFCILSP---HFDGLPYAISVFETIQEPNLLIWN 60

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSL---EMFRE-MYLC 123
           ++   +A  S P SA +L+  M     IS   + N +T   F ++S    + F+E   + 
Sbjct: 61  TMFRGHALSSDPVSALKLYVCM-----ISLGLLPNSYTFP-FLLKSCAKSKAFKEGQQIH 114

Query: 124 GFVLKAE------LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSK 177
           G VLK        +   +IS+  Q G LE   ++      D S    V   TAL+  Y+ 
Sbjct: 115 GHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKV-----FDESPHRDVVSYTALIKGYAS 169

Query: 178 CHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIV 237
             +   A ++F+++ +++ VSW AMISG  ++ NY   ++LF+ M +  V+P   T+  V
Sbjct: 170 RGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTV 229

Query: 238 LLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKD 297
           + ACA+   +  G+ +H +    GF  +  +  AL+ +Y +C E L  A  +FE    KD
Sbjct: 230 VSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGE-LETACGLFEGLPYKD 288

Query: 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHC 357
           V+ W+++I GY+      EA+ LF  M      PN VT+L+IL +C     +  G  +H 
Sbjct: 289 VISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHV 348

Query: 358 YIMK--AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYG 415
           YI K   G+    S+  +L++MY+KCG I ++HQ+FN +  +   SW  +I G+  HG  
Sbjct: 349 YIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRA 408

Query: 416 EEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC 475
           + +  +F  M+++G+EPD IT + +LSAC+H+G++     +F ++ ++ K+   +EHY C
Sbjct: 409 DASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGC 468

Query: 476 YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPEN 535
            +DLLG SG  ++A ++++TM M+P   I  SL+ AC++HG +E+ E  A  LI+ EPEN
Sbjct: 469 MIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPEN 528

Query: 536 AANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
             +Y LLS + + +G W        ++  KG+ K  G S IE
Sbjct: 529 PGSYVLLSNIYATAGRWNEVANTRALLNDKGMKKVPGCSSIE 570


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 180/597 (30%), Positives = 311/597 (52%), Gaps = 49/597 (8%)

Query: 19  HPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSK 78
           HP   Y    +L       AYA++ +   L L      +  D +    N+L+S  A    
Sbjct: 41  HPPPTYVLNHLL------TAYARSGR---LPLARRLFDAMPDPNLFTRNALLSALAHARL 91

Query: 79  PESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLE-----MFREMYLCGFVLKAE--L 131
                +LF  MP RD +S+N++I  F+  G   R+       +  E  + G  ++     
Sbjct: 92  LPDMDRLFASMPQRDAVSYNALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRPSRIT 151

Query: 132 LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM 191
           ++G++   S +G+  LGRQ+H  ++  G F    F  + L+D+Y+K      A RVF++M
Sbjct: 152 MSGMVMAASALGDRALGRQVHCQIMRLG-FGAYAFTWSPLVDMYAKMGLIGDAKRVFDEM 210

Query: 192 VIRN-------------------------------EVSWTAMISGCIDSQNYDTGIDLFR 220
           V++N                                ++WT M++G   +      +D+FR
Sbjct: 211 VVKNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFR 270

Query: 221 AMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECT 280
            M+ EGV   + T   +L AC  L     GK IH Y     +D +  + +AL+ MY +C 
Sbjct: 271 RMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKC- 329

Query: 281 EALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAIL 340
            ++  A  +F R   K+++ W+++I GY Q+G   EA+++FS M+ + I+PN  TL +++
Sbjct: 330 RSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVI 389

Query: 341 SSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFV 400
           SSC   + L  G   HC  + +GL   +++ +AL+ +Y KCGSI  +H++F+EM   D V
Sbjct: 390 SSCANLASLEEGAQFHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQV 449

Query: 401 SWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNV 460
           S+T L+SGY   G  +E + LF +M   GV+P+ +T + +LSAC+ +GLV++  + F+++
Sbjct: 450 SYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVLSACSRSGLVEKGCSYFHSM 509

Query: 461 MKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEV 520
            ++  I L  +HY C +DL  +SG++++A + +  MP  P     ++L+SACR+ G +E+
Sbjct: 510 QQDHGIVLLDDHYTCMIDLYSRSGRLKEAEEFIRQMPRCPDAIGWATLLSACRLRGDMEI 569

Query: 521 AEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +  A  L++ +P+N A+Y LL  + +  G W     + R MR + + K  G S I+
Sbjct: 570 GKWAAENLLKTDPQNPASYVLLCSMHASKGEWSEVALLRRGMRDRQVKKEPGCSWIK 626



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 106/207 (51%), Gaps = 17/207 (8%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E+ + ++  E+   G+  N   L SVI +CA   + +  G Q HC AL SG      +S+
Sbjct: 364 EEAVRVF-SEMQTDGIKPNDFTLGSVISSCANLASLEE-GAQFHCMALVSGLRPYITVSS 421

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +L+++Y K    E A++LFDEMP+ D +S+ ++++ + Q G    ++++F +M L G   
Sbjct: 422 ALVTLYGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDLFEKMLLKGVKP 481

Query: 128 KAELLAGIISLCSQIGELELG-------RQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
                 G++S CS+ G +E G       +Q H +V++D  +       T ++DLYS+   
Sbjct: 482 NGVTFIGVLSACSRSGLVEKGCSYFHSMQQDHGIVLLDDHY-------TCMIDLYSRSGR 534

Query: 181 WLIALRVFEQMV-IRNEVSWTAMISGC 206
              A     QM    + + W  ++S C
Sbjct: 535 LKEAEEFIRQMPRCPDAIGWATLLSAC 561


>gi|449522252|ref|XP_004168141.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g37310-like [Cucumis sativus]
          Length = 635

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 178/588 (30%), Positives = 300/588 (51%), Gaps = 54/588 (9%)

Query: 38  AYAQTHQH--------FGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEM 89
           AY +  QH         G QLH   + S    D  + + LIS Y+K      AY +F ++
Sbjct: 5   AYGRLIQHCTDHLFFRVGKQLHARLVLSSVVPDNFLGSKLISFYSKSGSIRDAYNVFGKI 64

Query: 90  PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG--------FVLKAELLAGIISLCSQ 141
           P ++  SWN++   +T +  +   L++F  +            F +   L A + SL S 
Sbjct: 65  PRKNIFSWNALFISYTLHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCSLKA-LASLFSN 123

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
            G   L +++H+ ++  G  E  +FV  AL+  YS+C   ++A  +F++M  R+ VSW A
Sbjct: 124 SG---LAKEVHSFILRRG-LEYDIFVVNALITFYSRCDELVLARIMFDRMPERDTVSWNA 179

Query: 202 MISGCIDSQNYDTGIDLFRAMQRE-GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
           M++G     +Y+   +LFR M     VKP  +T   VL ACA+  DL  G  +H +    
Sbjct: 180 MLAGYSQGGSYEECKELFRVMLSSVEVKPNALTAVSVLQACAQSNDLTFGIEVHRFVNES 239

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
               D  L  A++ +Y +C   L  AR +FE    KD + + S+I GY   G +++AM L
Sbjct: 240 QIKMDVSLWNAVIGLYAKCG-ILDYARELFEEMPEKDGITYCSMISGYMVHGFVNQAMDL 298

Query: 321 FSRMRLERI-------------------------------EPNSVTLLAILSSCTRQSFL 349
           F      R+                                PN+VTL +IL   +  S L
Sbjct: 299 FREQERPRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFSTL 358

Query: 350 SHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGY 409
             G  +H Y ++   + ++ +  A+++ Y+KCG +  +  +F+++  R  ++WT++IS Y
Sbjct: 359 KGGKEIHGYAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSLIAWTSIISAY 418

Query: 410 GFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA 469
             HG    AL LF EM  +G++PD +T  ++L+AC H+G + EA  +FN ++ E  I   
Sbjct: 419 AVHGDANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELDEAWKIFNVLLPEYGIQPL 478

Query: 470 IEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLI 529
           +EHYAC V +L ++GK+ DA + +S MP++P+ ++  +L++   + G +E+ + +  +L 
Sbjct: 479 VEHYACMVGVLSRAGKLSDAVEFISKMPLEPTAKVWGALLNGASVAGDVELGKYVFDRLF 538

Query: 530 EAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           E EPEN  NY +++ + S+SG W  A+ +  +M+   L K  G S IE
Sbjct: 539 EIEPENTGNYVIMANLYSQSGRWKDADTIRDLMKEVRLKKIPGNSWIE 586



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 122/469 (26%), Positives = 231/469 (49%), Gaps = 42/469 (8%)

Query: 34  IKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRD 93
           +KA A   ++     ++H   L+ G + D  + N+LI+ Y++  +   A  +FD MP RD
Sbjct: 114 LKALASLFSNSGLAKEVHSFILRRGLEYDIFVVNALITFYSRCDELVLARIMFDRMPERD 173

Query: 94  TISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAG--IISLCSQIGELELGRQI 151
           T+SWN+++  ++Q G Y    E+FR M L    +K   L    ++  C+Q  +L  G ++
Sbjct: 174 TVSWNAMLAGYSQGGSYEECKELFRVM-LSSVEVKPNALTAVSVLQACAQSNDLTFGIEV 232

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV-------------- 197
           H  V  +   ++ V +  A++ LY+KC     A  +FE+M  ++ +              
Sbjct: 233 HRFV-NESQIKMDVSLWNAVIGLYAKCGILDYARELFEEMPEKDGITYCSMISGYMVHGF 291

Query: 198 -----------------SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
                            +W A+ISG + +   +  +D+FRAMQ  G +P  VTL  +L  
Sbjct: 292 VNQAMDLFREQERPRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASILPV 351

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
            +    L+ GK IHGYA    +D + +++ A++  Y +C   LH A+++F++ K + ++ 
Sbjct: 352 FSHFSTLKGGKEIHGYAIRNTYDRNIYVATAIIDSYAKCG-YLHGAQLVFDQIKGRSLIA 410

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           W+SII  Y+  GD + A+ LF  M    I+P+ VT  ++L++C     L     +   ++
Sbjct: 411 WTSIISAYAVHGDANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELDEAWKIFNVLL 470

Query: 361 -KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS-WTTLISGYGFHGYGEEA 418
            + G+   V     ++ + S+ G ++ + +  ++M        W  L++G    G  E  
Sbjct: 471 PEYGIQPLVEHYACMVGVLSRAGKLSDAVEFISKMPLEPTAKVWGALLNGASVAGDVELG 530

Query: 419 LQLFLEMQESGVEPDAITVLAILSAC-NHAGLVKEAETLFNNVMKEKKI 466
             +F  + E  +EP+      I++   + +G  K+A+T+  ++MKE ++
Sbjct: 531 KYVFDRLFE--IEPENTGNYVIMANLYSQSGRWKDADTI-RDLMKEVRL 576



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/375 (25%), Positives = 171/375 (45%), Gaps = 40/375 (10%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           YE+   L++  L    +  N     SV++ACA +     FG+++H    +S    D  + 
Sbjct: 190 YEECKELFRVMLSSVEVKPNALTAVSVLQACAQSNDLT-FGIEVHRFVNESQIKMDVSLW 248

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTI------------------------------- 95
           N++I +YAK    + A +LF+EMP +D I                               
Sbjct: 249 NAVIGLYAKCGILDYARELFEEMPEKDGITYCSMISGYMVHGFVNQAMDLFREQERPRLP 308

Query: 96  SWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALV 155
           +WN++I+   QN     ++++FR M   G       LA I+ + S    L+ G++IH   
Sbjct: 309 TWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGGKEIHGYA 368

Query: 156 IVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTG 215
           I + +++ +++V+TA++D Y+KC +   A  VF+Q+  R+ ++WT++IS      + +  
Sbjct: 369 IRN-TYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSLIAWTSIISAYAVHGDANVA 427

Query: 216 IDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY---AYCCGFDFDHHLSAAL 272
           + LF  M   G++P +VT T VL ACA   +L     I       Y      +H+  A +
Sbjct: 428 LSLFYEMLTNGIQPDQVTFTSVLAACAHSGELDEAWKIFNVLLPEYGIQPLVEHY--ACM 485

Query: 273 MHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPN 332
           + +     +       I +        +W +++ G S +GD+     +F   RL  IEP 
Sbjct: 486 VGVLSRAGKLSDAVEFISKMPLEPTAKVWGALLNGASVAGDVELGKYVFD--RLFEIEPE 543

Query: 333 SVTLLAILSSCTRQS 347
           +     I+++   QS
Sbjct: 544 NTGNYVIMANLYSQS 558


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 180/580 (31%), Positives = 306/580 (52%), Gaps = 51/580 (8%)

Query: 31  PSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMP 90
           P  IK+ + AQ       QLH   LK  + +     + L+S+Y+  +    + +LF+ + 
Sbjct: 16  PLSIKSRSQAQ-------QLHAQVLKFQASSL-CNLSLLLSIYSHINLLHDSLRLFNTIH 67

Query: 91  YRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQ 150
           +   ++W S+I C+T +G   +SL  F  M   G      +   ++  C+ + +L LG  
Sbjct: 68  FPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGES 127

Query: 151 IHALVIVDGSFELSVFVSTALLDLYSKC-------HHWLIALRVFEQMVIRNE------- 196
           +H  +I  G  +  ++   AL+++YSK           L A  VF++M  R         
Sbjct: 128 LHGYIIRVG-LDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSV 186

Query: 197 ------------------VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVL 238
                             VSW  +I+G   +  Y+  + + R M    +KP   TL+ VL
Sbjct: 187 LSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVL 246

Query: 239 LACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDV 298
              AE  D+  GK IHG +   G D D +++++L+ MY +CT      R +F     +D 
Sbjct: 247 PLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCR-VFTLLTERDG 305

Query: 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCY 358
           + W+SII G  Q+G   E ++ F +M + +I+P S +  +I+ +C   + L  G  +H Y
Sbjct: 306 ISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGY 365

Query: 359 IMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEA 418
           I + G + ++ I ++L++MY+KCG+I ++ QIF+ M  RD VSWT +I G   HG   +A
Sbjct: 366 ITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDA 425

Query: 419 LQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVD 478
           ++LF +M+  G++       A+L+AC+H GLV EA   FN++ ++  IA  +EHYA   D
Sbjct: 426 IELFEQMETEGIK-------AVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSD 478

Query: 479 LLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAAN 538
           LLG++G++E+A   +  M + P+  I ++L+SACR+H  +++AE +A++++E +P N   
Sbjct: 479 LLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHKNIDMAEKVANRILEVDPNNTGA 538

Query: 539 YTLLSMVCSESGNWLGAEEVWRV-MRAKGLSKSYGFSRIE 577
           Y LL+ + S +  W  A + WR  MR  G+ K+   S IE
Sbjct: 539 YILLANIYSAARRWKEAAK-WRASMRRIGIRKTPACSWIE 577



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/429 (27%), Positives = 211/429 (49%), Gaps = 50/429 (11%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFS--- 77
           SGLY +  + PSV+K+CA      + G  LH   ++ G D D    N+L++MY+K     
Sbjct: 100 SGLYPDHNVFPSVLKSCALLMD-LNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLE 158

Query: 78  -----------------------------KPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
                                          +S  ++F+ MP +D +SWN+II    +NG
Sbjct: 159 ESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNG 218

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
            Y  +L M REM        +  L+ ++ L ++  ++  G++IH   I  G  +  ++V+
Sbjct: 219 LYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQG-LDADIYVA 277

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
           ++L+D+Y+KC     + RVF  +  R+ +SW ++I+GC+ +  +D G+  FR M    +K
Sbjct: 278 SSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIK 337

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
           P   + + ++ ACA L  L  GK +HGY    GFD +  ++++L+ MY +C   +  A+ 
Sbjct: 338 PKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGN-IRTAKQ 396

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
           IF+R +++D+V W+++I G +  G   +A++LF +M  E I+       A+L++C+    
Sbjct: 397 IFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIK-------AVLTACSHGGL 449

Query: 349 LSHGLGVHCYIMKAGLNFDVSIG----NALMNMYSKCGSITSSHQIFNEMAARDFVS-WT 403
           +        Y      +F ++ G     A+ ++  + G +  ++     M      S W 
Sbjct: 450 VDEAWK---YFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWA 506

Query: 404 TLISGYGFH 412
           TL+S    H
Sbjct: 507 TLLSACRVH 515



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 80/237 (33%), Positives = 135/237 (56%), Gaps = 10/237 (4%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
            YE+TL + + E+  + L  ++  L SV+   A        G ++H  +++ G DAD  +
Sbjct: 219 LYEETLRMIR-EMGGANLKPDSFTLSSVLPLIA-ENVDISRGKEIHGCSIRQGLDADIYV 276

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
           ++SLI MYAK ++   + ++F  +  RD ISWNSII    QNG +   L  FR+M +   
Sbjct: 277 ASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKI 336

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
             K+   + I+  C+ +  L LG+Q+H  +  +G F+ ++F++++L+D+Y+KC +   A 
Sbjct: 337 KPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNG-FDENIFIASSLVDMYAKCGNIRTAK 395

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
           ++F++M +R+ VSWTAMI GC         I+LF  M+ EG+K        VL AC+
Sbjct: 396 QIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKA-------VLTACS 445


>gi|28564593|dbj|BAC57760.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50509708|dbj|BAD31746.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 703

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 185/600 (30%), Positives = 314/600 (52%), Gaps = 49/600 (8%)

Query: 15  KQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYA 74
           ++ L P+   S+  + P V     + ++H   G+QLH  +L  G    P++   L+S+Y 
Sbjct: 61  RRHLPPAAGTSHLLLRP-VAALLHHHRSHLRLGVQLHALSLSLGLSRHPILLPRLLSVYT 119

Query: 75  KFSK--PESAYQLFDE-MPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAEL 131
                 P +A    D  +P    + +N +I+   ++G  +++L  ++EM   G +     
Sbjct: 120 SHPSLLPSAASVAADSTLP----LPYNVLISSCLRHGLPLQALAAYQEMGKNGVLPDVFT 175

Query: 132 LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM 191
              ++  C++  EL LGR +H +       + ++F   AL+ +Y+KC     A +VF+ M
Sbjct: 176 YPSVLRACAEARELVLGRAVH-MHAAGAGMDGNLFFQNALMSMYAKCGDLASARKVFDGM 234

Query: 192 VIRNEVSWTAMIS-----------------------------------GCIDSQNYDTGI 216
           V R+ VSW +MIS                                   G I  ++Y   +
Sbjct: 235 VQRDVVSWNSMISSYAAVGQWAEAMELFRRMRDEGTEVNSVTWNTIAGGYIQMRDYRAAV 294

Query: 217 DLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY--CCGFDFDHHLSAALMH 274
            L R M R G +   VTL I L AC+ +  LR GK IHG A   CC  D    +S AL+ 
Sbjct: 295 GLIREMVRGGAEVDYVTLVIGLNACSRVGWLRLGKEIHGLAVRMCC--DQVESVSNALIT 352

Query: 275 MYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSV 334
           MY  C + +  AR++F   +   VV W++++  ++ S    EA  +F  M    ++PN V
Sbjct: 353 MYARCKD-MECARMLFRMLECPGVVTWNTMLSSFALSDCAEEASSIFREMICRGVKPNYV 411

Query: 335 TLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEM 394
           T++  L+ C R + L HG  +H +I+K G      + N+L++MYSK G ++ +  +F+ M
Sbjct: 412 TVVTYLALCARVANLQHGQELHGHIVKHGFKGYRLLWNSLIDMYSKSGRLSVAQNVFDTM 471

Query: 395 AARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAE 454
              D +S+T++I+GYG  G G  AL+LF +M +SG++PD I ++ +LSAC+H+GLV E E
Sbjct: 472 DDCDMISYTSMIAGYGMQGKGTVALRLFEQMIDSGIKPDHIIMVTVLSACSHSGLVLEGE 531

Query: 455 TLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRI 514
            LFN ++    I   +EHY+C +DL  ++G +E A +++   P  P++ + ++LV AC  
Sbjct: 532 ELFNKMVISYGIKPQMEHYSCMIDLYARAGLLEKAEEMLDHTPFPPTSTMWAALVGACHD 591

Query: 515 HGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFS 574
            G +E+ E  A +L+E   ENA +Y L++ + + +G W     V ++MR  G++K+ G +
Sbjct: 592 RGNIEIGERAARKLLEMRTENAGHYVLIANMYAAAGCWDELATVRKLMRDLGVTKAPGLA 651



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 123/458 (26%), Positives = 219/458 (47%), Gaps = 44/458 (9%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           Q L  Y QE+  +G+  +    PSV++ACA A+     G  +H  A  +G D +    N+
Sbjct: 156 QALAAY-QEMGKNGVLPDVFTYPSVLRACAEAR-ELVLGRAVHMHAAGAGMDGNLFFQNA 213

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM-------- 120
           L+SMYAK     SA ++FD M  RD +SWNS+I+ +   G +  ++E+FR M        
Sbjct: 214 LMSMYAKCGDLASARKVFDGMVQRDVVSWNSMISSYAAVGQWAEAMELFRRMRDEGTEVN 273

Query: 121 ----------------YLCGFVLKAELLAG---------IISL--CSQIGELELGRQIHA 153
                           Y     L  E++ G         +I L  CS++G L LG++IH 
Sbjct: 274 SVTWNTIAGGYIQMRDYRAAVGLIREMVRGGAEVDYVTLVIGLNACSRVGWLRLGKEIHG 333

Query: 154 LVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYD 213
           L +     ++   VS AL+ +Y++C     A  +F  +     V+W  M+S    S   +
Sbjct: 334 LAVRMCCDQVES-VSNALITMYARCKDMECARMLFRMLECPGVVTWNTMLSSFALSDCAE 392

Query: 214 TGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALM 273
               +FR M   GVKP  VT+   L  CA + +L++G+ +HG+    GF     L  +L+
Sbjct: 393 EASSIFREMICRGVKPNYVTVVTYLALCARVANLQHGQELHGHIVKHGFKGYRLLWNSLI 452

Query: 274 HMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNS 333
            MY + +  L  A+ +F+     D++ ++S+I GY   G  + A++LF +M    I+P+ 
Sbjct: 453 DMYSK-SGRLSVAQNVFDTMDDCDMISYTSMIAGYGMQGKGTVALRLFEQMIDSGIKPDH 511

Query: 334 VTLLAILSSCTRQSFLSHGLGV-HCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFN 392
           + ++ +LS+C+    +  G  + +  ++  G+   +   + ++++Y++ G +  + ++ +
Sbjct: 512 IIMVTVLSACSHSGLVLEGEELFNKMVISYGIKPQMEHYSCMIDLYARAGLLEKAEEMLD 571

Query: 393 EMA-ARDFVSWTTLISGYGFHG---YGEEALQLFLEMQ 426
                     W  L+      G    GE A +  LEM+
Sbjct: 572 HTPFPPTSTMWAALVGACHDRGNIEIGERAARKLLEMR 609


>gi|125555495|gb|EAZ01101.1| hypothetical protein OsI_23130 [Oryza sativa Indica Group]
          Length = 766

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 175/559 (31%), Positives = 291/559 (52%), Gaps = 5/559 (0%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           SG  ++   L S ++AC         G Q+H  ALKS   +D ++ N+L++MY+K    +
Sbjct: 146 SGTAADQFALGSAVRACT-ELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVD 204

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAG-IISLC 139
             + LF+ +  +D ISW SII  F Q GF + +L++FR+M + G     E   G     C
Sbjct: 205 DGFMLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFRKMIVEGSHHPNEFHFGSAFRAC 264

Query: 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSW 199
             +G  E G QIH L I     +  ++V  +L D+Y++  +   A   F ++   + VSW
Sbjct: 265 GAVGSWEYGEQIHGLSI-KYRLDRDLYVGCSLSDMYARFKNLDSARVAFYRIEAPDLVSW 323

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
            ++++           + LF  M+  G++P  +T+  +L AC     L +G+ IH Y   
Sbjct: 324 NSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVK 383

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
            G D D  +  +L+ MY  C++ L  A  +F   K +DVV W+SI+   +Q     E +K
Sbjct: 384 LGLDGDVSVCNSLLSMYARCSD-LSSAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLK 442

Query: 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           LFS +       + ++L  +LS+     +      VH Y  KAGL  D  + N L++ Y+
Sbjct: 443 LFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYA 502

Query: 380 KCGSITSSHQIFNEMAA-RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
           KCGS+  + ++F  M   RD  SW++LI GY   GY +EAL LF  M+  G+ P+ +T +
Sbjct: 503 KCGSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEALDLFSRMRSLGIRPNHVTFI 562

Query: 439 AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPM 498
            +L+AC+  G V E    ++ +  E  I    EH +C VDLL ++GK+ +A   +  MP 
Sbjct: 563 GVLTACSRVGFVNEGCYYYSIMEPEYGIVPTREHCSCIVDLLARAGKLTEAANFIDQMPF 622

Query: 499 KPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEV 558
           +P   +  +L++A ++H  +E+ +  A  ++  +P ++A Y LL  + + SGNW     +
Sbjct: 623 EPDIIMWKTLLAASKMHNDMEMGKRAAEGILNIDPSHSAAYVLLCNIYAASGNWNEFARL 682

Query: 559 WRVMRAKGLSKSYGFSRIE 577
            + MR  G+ KS G S ++
Sbjct: 683 KKAMRTSGVKKSPGKSWVK 701



 Score =  224 bits (572), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 139/457 (30%), Positives = 236/457 (51%), Gaps = 18/457 (3%)

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
            + V+ N LI+MY + + P+SA Q+FDEMP R+ +SW S+I    QNG    +L +F  M
Sbjct: 84  GNTVLGNHLITMYGRCAAPDSARQVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSM 143

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVD--GSFELSVFVSTALLDLYSKC 178
              G       L   +  C+++G++  GRQ+HA  +    GS    + V  AL+ +YSK 
Sbjct: 144 LRSGTAADQFALGSAVRACTELGDVGTGRQVHAHALKSERGS---DLIVQNALVTMYSKN 200

Query: 179 HHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK-PTRVTLTIV 237
                   +FE++  ++ +SW ++I+G          + +FR M  EG   P        
Sbjct: 201 GLVDDGFMLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFRKMIVEGSHHPNEFHFGSA 260

Query: 238 LLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKD 297
             AC  +     G+ IHG +     D D ++  +L  MY      L  AR+ F R +  D
Sbjct: 261 FRACGAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARFKN-LDSARVAFYRIEAPD 319

Query: 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHC 357
           +V W+SI+  YS  G LSEA+ LFS MR   + P+ +T+  +L +C  +  L HG  +H 
Sbjct: 320 LVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHS 379

Query: 358 YIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEE 417
           Y++K GL+ DVS+ N+L++MY++C  ++S+  +F+E+  +D V+W ++++    H + EE
Sbjct: 380 YLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSILTACAQHNHPEE 439

Query: 418 ALQLFLEMQESGVEPDAITVLAILSACNHAG---LVKE--AETLFNNVMKEKKIALAIEH 472
            L+LF  + +S    D I++  +LSA    G   +VK+  A      ++ ++ ++  +  
Sbjct: 440 VLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKAGLVDDRMLSNTL-- 497

Query: 473 YACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLV 509
               +D   K G ++DA ++   M         SSL+
Sbjct: 498 ----IDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLI 530


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 182/583 (31%), Positives = 316/583 (54%), Gaps = 19/583 (3%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGS-DADPVISN 67
           + + ++ Q L   G+Y N     +VI+AC      +  GL L    LK+G  D+   +  
Sbjct: 138 KAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFKT-GLCLFGFVLKTGYFDSHVCVGC 196

Query: 68  SLISMYAK---FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC- 123
            LI M+ K    +  ESA ++FD+M  ++ ++W  +I    Q G+   ++++F EM +  
Sbjct: 197 ELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSS 256

Query: 124 GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
           G+V     L G+IS+C++I  L LG+++H+ VI  G   L + V  +L+D+Y+KC     
Sbjct: 257 GYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRSG-LVLDLCVGCSLVDMYAKCGLVQE 315

Query: 184 ALRVFEQMVIRNEVSWTAMISGCI-DSQNYDT-GIDLFRAMQREG-VKPTRVTLTIVLLA 240
           A +VF+ M   N +SWTA+++G +     Y+   + +F  M  +G V P   T + VL A
Sbjct: 316 ARKVFDGMREHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKA 375

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPAR----IIFERTKVK 296
           CA L D   G+ +HG     G      +   L+ +Y + +  +  AR    ++FE+  V 
Sbjct: 376 CASLPDFDFGEQVHGQTIKLGLSAIDCVGNGLVSVYAK-SGRMESARKCFDVLFEKNLVS 434

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVH 356
           + V+  + ++ +    +L+    L   +       +S T  ++LS       +  G  +H
Sbjct: 435 ETVVDDTNVKDF----NLNSEQDLDREVEYVGSGVSSFTYASLLSGAACIGTIGKGEQIH 490

Query: 357 CYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGE 416
             ++K G   D+S+ NAL++MYSKCG+  ++ Q+FN+M   + ++WT++I+G+  HG+  
Sbjct: 491 AMVVKIGFRTDLSVNNALISMYSKCGNKEAALQVFNDMEDCNVITWTSIINGFAKHGFAS 550

Query: 417 EALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACY 476
           +AL+LF  M E+GV+P+ +T +A+LSAC+H GL+ EA   F ++     I   +EHYAC 
Sbjct: 551 KALELFYNMLETGVKPNDVTYIAVLSACSHVGLIDEAWKHFTSMRDNHGIVPRMEHYACM 610

Query: 477 VDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENA 536
           VDLLG+SG + +A + +++MP      +  + + +CR+H   ++ E  A  ++E EP + 
Sbjct: 611 VDLLGRSGLLSEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKMILEREPHDP 670

Query: 537 ANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIENE 579
           A Y LLS + +  G W     + + M+ K ++K  G S IE E
Sbjct: 671 ATYILLSNLYATEGRWEDVAAIRKNMKQKQITKEAGSSWIEVE 713



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 159/567 (28%), Positives = 276/567 (48%), Gaps = 31/567 (5%)

Query: 10  TLHLYKQE-LHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           TL+L   E  H + L +++ +L   I+       + H G  LH     S    D ++ NS
Sbjct: 38  TLNLTDTESTHNNKLITSSLLLKQCIRT-----KNTHLGKLLHHKLTTSNLPLDTLLLNS 92

Query: 69  LISMYAKFSKPESAYQLFDEM--PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           LI++Y+K + P +A+ +F  M    RD +S++SII+CF  N   ++++EMF ++ L   V
Sbjct: 93  LITLYSKSNDPITAFSIFQSMENSKRDVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGV 152

Query: 127 LKAEL-LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSK-CHHWLI- 183
              E     +I  C + G  + G  +   V+  G F+  V V   L+D++ K C    + 
Sbjct: 153 YPNEYCFTAVIRACLKGGFFKTGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLE 212

Query: 184 -ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM-QREGVKPTRVTLTIVLLAC 241
            A +VF++M  +N V+WT MI+        D  IDLF  M    G  P R TLT ++  C
Sbjct: 213 SARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVC 272

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           AE++ L  GK +H +    G   D  +  +L+ MY +C   +  AR +F+  +  +V+ W
Sbjct: 273 AEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCG-LVQEARKVFDGMREHNVMSW 331

Query: 302 SSIIRGYSQSGD--LSEAMKLFSRMRLE-RIEPNSVTLLAILSSCTRQSFLSHGLGVHCY 358
           ++++ GY + G     EAM++FS M L+  + PN  T   +L +C        G  VH  
Sbjct: 332 TALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQVHGQ 391

Query: 359 IMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL--ISGYGFHGYGE 416
            +K GL+    +GN L+++Y+K G + S+ + F+ +  ++ VS T +   +   F+   E
Sbjct: 392 TIKLGLSAIDCVGNGLVSVYAKSGRMESARKCFDVLFEKNLVSETVVDDTNVKDFNLNSE 451

Query: 417 EALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK-KIALAIEHYAC 475
           + L   +E   SGV   + T  ++LS     G + + E +   V+K   +  L++ +   
Sbjct: 452 QDLDREVEYVGSGVS--SFTYASLLSGAACIGTIGKGEQIHAMVVKIGFRTDLSVNN--A 507

Query: 476 YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EP 533
            + +  K G  E A +V + M    +    +S+++    HG    A  L + ++E   +P
Sbjct: 508 LISMYSKCGNKEAALQVFNDME-DCNVITWTSIINGFAKHGFASKALELFYNMLETGVKP 566

Query: 534 ENAANYTLLSMVCSESGNWLGAEEVWR 560
            +     +LS  CS  G     +E W+
Sbjct: 567 NDVTYIAVLS-ACSHVG---LIDEAWK 589



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 120/239 (50%), Gaps = 2/239 (0%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           +  + + ++   L   G+  N      V+KACA       FG Q+H   +K G  A   +
Sbjct: 345 YEREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFD-FGEQVHGQTIKLGLSAIDCV 403

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
            N L+S+YAK  + ESA + FD +  ++ +S   + +   ++       ++ RE+   G 
Sbjct: 404 GNGLVSVYAKSGRMESARKCFDVLFEKNLVSETVVDDTNVKDFNLNSEQDLDREVEYVGS 463

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
            + +   A ++S  + IG +  G QIHA+V+  G F   + V+ AL+ +YSKC +   AL
Sbjct: 464 GVSSFTYASLLSGAACIGTIGKGEQIHAMVVKIG-FRTDLSVNNALISMYSKCGNKEAAL 522

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
           +VF  M   N ++WT++I+G          ++LF  M   GVKP  VT   VL AC+ +
Sbjct: 523 QVFNDMEDCNVITWTSIINGFAKHGFASKALELFYNMLETGVKPNDVTYIAVLSACSHV 581


>gi|357140731|ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 695

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 178/563 (31%), Positives = 304/563 (53%), Gaps = 5/563 (0%)

Query: 19  HPSGLYSNTAI-LPSVIKACAYAQTHQHFGLQLHCTALKSGSDA-DPVISNSLISMYAKF 76
           H   L + T++ L + +++C  A   +  G  LH   + SG+ A    ++N LI+MY+  
Sbjct: 8   HSRSLDTATSLRLAAPLQSCGRAGDLR-LGRCLHARLVLSGAAAASTFLANHLITMYSHC 66

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
           +   SA +LFD MP  + +SW ++++  TQN  +  +L  F  M   G V     L+   
Sbjct: 67  ADVPSAVRLFDAMPRPNLVSWTTLVSGLTQNSMHRDALAAFSSMCRAGLVPTQFALSSAA 126

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
              + +     G Q+H + +  G F+  +FV++ L D+YSK    + A RVF+QM  ++ 
Sbjct: 127 RAAAALAARHAGAQLHCVGVRLG-FDAELFVASNLADMYSKSGLLVEACRVFDQMPQKDA 185

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREG-VKPTRVTLTIVLLACAELRDLRNGKAIHG 255
           V+WTAMI G   + N +  +  FR M+REG V   +  L  VL A   L+D    +AIH 
Sbjct: 186 VAWTAMIDGYAKNGNLEAAVIAFRDMRREGLVGADQHVLCSVLSASGGLKDGWLARAIHS 245

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
                GF+ +  +  AL  MY +  +  + AR++       +VV  +S+I GY ++  + 
Sbjct: 246 CVMKSGFEQEVAVRNALTDMYAKAADMDNAARVVKIDQGSLNVVSATSLIDGYIETDCIE 305

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           +A+ +F  +R + +EPN  T  +++  C  Q+ L  G  +H  ++K  L  D  + + L+
Sbjct: 306 KALLMFIELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAEVIKTSLISDSFVSSTLL 365

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           +MY KCG I+ S Q+F E+     ++W   I+    HG+G EA++ F  M  SG+ P+ I
Sbjct: 366 DMYGKCGLISLSIQLFKEIEYHTDIAWNAAINVLAQHGHGREAIRAFDRMTSSGIRPNHI 425

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           T +++L+AC+HAGLV E    F ++     I    EHY+C +D+ G++G++++A K +  
Sbjct: 426 TFVSLLTACSHAGLVDEGLKYFYSMKDHHGIEPKGEHYSCIIDMYGRAGRLDEAEKFIGE 485

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGA 555
           MP+KP+     SL+ ACR+ G  E+ E+ A  +++ EP+N   +  LS + +  G W   
Sbjct: 486 MPVKPNAYGWCSLLGACRMRGNKELGEIAADNMMKLEPDNTGVHVSLSGIYASLGQWEDV 545

Query: 556 EEVWRVMRAKGLSKSYGFSRIEN 578
           + V ++MR   + K  GFS +++
Sbjct: 546 KAVRKLMRDNRIKKLPGFSWVDS 568


>gi|302763107|ref|XP_002964975.1| hypothetical protein SELMODRAFT_30550 [Selaginella moellendorffii]
 gi|300167208|gb|EFJ33813.1| hypothetical protein SELMODRAFT_30550 [Selaginella moellendorffii]
          Length = 703

 Score =  295 bits (756), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 186/544 (34%), Positives = 302/544 (55%), Gaps = 16/544 (2%)

Query: 8   EQTLHLYKQ-ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           EQ L L+K+ EL P     N     SV  AC+    H+  G ++H     S  +A+  ++
Sbjct: 170 EQALQLFKRMELEP-----NEVTFASVFNACSLLPDHREVGKRIHDRIRGSHLEANVTVA 224

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
            ++++MY KF K   A Q+F+ + +++ +SWN+++  +TQN     +LE++ EM +   V
Sbjct: 225 TAIVTMYGKFGKVGMARQVFNGIQHKNVVSWNAMLGAYTQNNLDREALEVYHEM-VAQKV 283

Query: 127 LKAELLAGI-ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
            + E+   I + + + +  L+LG ++H L +  G ++ ++ V  AL+ +Y KC+    A 
Sbjct: 284 QRDEVTVVIALGISASLRLLKLGIELHELSVAHG-YDSNIKVQNALISMYGKCNELDAAR 342

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
           RVF ++   + VSWTA+I            ++L++ M+ EG++P +VT T VL AC+   
Sbjct: 343 RVFSKVRAHDVVSWTALIVAYTQHGRNREALELYKQMEGEGMEPDKVTFTSVLSACSNTS 402

Query: 246 DLRNGKAIHG--YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTK-VKDVVIWS 302
           DL  G+A+H    A   GF  D  L AAL++MY +C   L  +  IF+  K  K VV+W+
Sbjct: 403 DLELGQALHARLLARKDGFS-DGVLVAALINMYVKCGR-LDLSSEIFQSCKDTKAVVVWN 460

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
           ++I  Y Q G    A+ L+  M+   ++P+  TL +ILS+C     L  G  +H  I+ +
Sbjct: 461 AMITAYEQEGYSRAAVDLYDMMKQRGLDPDESTLSSILSACAELQDLEKGEQLHVEIIAS 520

Query: 363 -GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
              + +  + NAL++MY+ CG I  +  +F  M  RD VSWT LIS Y   G    AL+L
Sbjct: 521 RDCSQNPVVLNALISMYASCGEIREAKAVFKRMKNRDVVSWTILISAYVQGGDARRALRL 580

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
           +  M   GV+P   T L +  AC HAGLV E +  F + M E +I    +HY+C V +L 
Sbjct: 581 YRRMLVEGVQPTEPTFLCVFLACGHAGLVDECKWYFQS-MIEDRITPTFDHYSCVVTVLS 639

Query: 482 KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTL 541
           ++GK+E+A  ++ +MP  P +   +SL+ ACR HG L+ A   A + +E + +++A Y L
Sbjct: 640 RAGKLEEAEDLLHSMPFNPGSVGWTSLLGACRTHGDLKRARRAADEAMELDRQDSAPYVL 699

Query: 542 LSMV 545
           LS V
Sbjct: 700 LSNV 703



 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 137/507 (27%), Positives = 269/507 (53%), Gaps = 13/507 (2%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G ++H   + SG  +D  + + L+ MY K    + A Q+F  +P R   SWN II  F +
Sbjct: 5   GRRIHAHIVASGLASDGFLGDHLLQMYGKCGSVDDAIQVFHSLPRRSLFSWNFIIAAFAK 64

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           N    +++EMFR M   G    +  L+ ++  CS + +LE G++IH+  +  G    S+ 
Sbjct: 65  NRHGRKAIEMFRSMDSAGIKPDSATLSSVLGACSSLRDLEEGKKIHSRALARG-LSSSII 123

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           V  AL+ +Y++C    +A  VF+++  ++ VSW AMI+ C      +  + LF+ M+ E 
Sbjct: 124 VQNALVSMYARCSRLDVARVVFDKIESKSVVSWNAMIAACARQGEAEQALQLFKRMELE- 182

Query: 227 VKPTRVTLTIVLLACAELRDLRN-GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
             P  VT   V  AC+ L D R  GK IH        + +  ++ A++ MY +  + +  
Sbjct: 183 --PNEVTFASVFNACSLLPDHREVGKRIHDRIRGSHLEANVTVATAIVTMYGKFGK-VGM 239

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           AR +F   + K+VV W++++  Y+Q+    EA++++  M  ++++ + VT++  L     
Sbjct: 240 ARQVFNGIQHKNVVSWNAMLGAYTQNNLDREALEVYHEMVAQKVQRDEVTVVIALGISAS 299

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
              L  G+ +H   +  G + ++ + NAL++MY KC  + ++ ++F+++ A D VSWT L
Sbjct: 300 LRLLKLGIELHELSVAHGYDSNIKVQNALISMYGKCNELDAARRVFSKVRAHDVVSWTAL 359

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           I  Y  HG   EAL+L+ +M+  G+EPD +T  ++LSAC++   ++  + L   ++  K 
Sbjct: 360 IVAYTQHGRNREALELYKQMEGEGMEPDKVTFTSVLSACSNTSDLELGQALHARLLARKD 419

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG----RLEVA 521
                   A  +++  K G+++ + ++  +     +  + +++++A    G     +++ 
Sbjct: 420 GFSDGVLVAALINMYVKCGRLDLSSEIFQSCKDTKAVVVWNAMITAYEQEGYSRAAVDLY 479

Query: 522 EMLAHQLIEAEPENAANYTLLSMVCSE 548
           +M+  + +  +P+ +   ++LS  C+E
Sbjct: 480 DMMKQRGL--DPDESTLSSILS-ACAE 503



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 128/253 (50%), Gaps = 4/253 (1%)

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L  G+ IH +    G   D  L   L+ MY +C  ++  A  +F     + +  W+ II 
Sbjct: 2   LPQGRRIHAHIVASGLASDGFLGDHLLQMYGKCG-SVDDAIQVFHSLPRRSLFSWNFIIA 60

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
            ++++    +A+++F  M    I+P+S TL ++L +C+    L  G  +H   +  GL+ 
Sbjct: 61  AFAKNRHGRKAIEMFRSMDSAGIKPDSATLSSVLGACSSLRDLEEGKKIHSRALARGLSS 120

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
            + + NAL++MY++C  +  +  +F+++ ++  VSW  +I+     G  E+ALQLF  M+
Sbjct: 121 SIIVQNALVSMYARCSRLDVARVVFDKIESKSVVSWNAMIAACARQGEAEQALQLFKRME 180

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
              +EP+ +T  ++ +AC+     +E     ++ ++   +   +      V + GK GK+
Sbjct: 181 ---LEPNEVTFASVFNACSLLPDHREVGKRIHDRIRGSHLEANVTVATAIVTMYGKFGKV 237

Query: 487 EDACKVVSTMPMK 499
             A +V + +  K
Sbjct: 238 GMARQVFNGIQHK 250



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 104/199 (52%), Gaps = 4/199 (2%)

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
           L  G  +H +I+ +GL  D  +G+ L+ MY KCGS+  + Q+F+ +  R   SW  +I+ 
Sbjct: 2   LPQGRRIHAHIVASGLASDGFLGDHLLQMYGKCGSVDDAIQVFHSLPRRSLFSWNFIIAA 61

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468
           +  + +G +A+++F  M  +G++PD+ T+ ++L AC+    ++E + + +  +  + ++ 
Sbjct: 62  FAKNRHGRKAIEMFRSMDSAGIKPDSATLSSVLGACSSLRDLEEGKKIHSRALA-RGLSS 120

Query: 469 AIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
           +I      V +  +  ++ D  +VV       S    +++++AC   G  E A  L  ++
Sbjct: 121 SIIVQNALVSMYARCSRL-DVARVVFDKIESKSVVSWNAMIAACARQGEAEQALQLFKRM 179

Query: 529 IEAEPENAANYTLLSMVCS 547
            E EP N   +  +   CS
Sbjct: 180 -ELEP-NEVTFASVFNACS 196


>gi|125563707|gb|EAZ09087.1| hypothetical protein OsI_31353 [Oryza sativa Indica Group]
          Length = 810

 Score =  295 bits (756), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 186/568 (32%), Positives = 310/568 (54%), Gaps = 18/568 (3%)

Query: 13  LYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISM 72
           L  +E+  +G+  N     S++ ACA     +    Q+H   LK+    D V+  +LIS 
Sbjct: 257 LLLREMVRNGVAINKYTATSILLACAQMSMVRE-ASQIHGMVLKTEMYLDCVVKEALIST 315

Query: 73  YAKFSKPESAYQLFDEMPYRDTISWNSIINCF---TQNGFYVRSLEMFREMYLCGFVLKA 129
           Y  F   E + ++F+E     T+S  SI + F     N   +RS+++ R M+  G     
Sbjct: 316 YTNFGFIELSEKVFEEA---GTVSNRSIWSAFISGVSNHSLLRSVQLLRRMFHQGLRPND 372

Query: 130 ELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
           +  A + S    +  +E G Q+H+  I +G F   + V +AL  +YS+C +   + +VFE
Sbjct: 373 KCYASVFS---SVNSIEFGGQLHSSAIKEG-FIHGILVGSALSTMYSRCDNVQDSYKVFE 428

Query: 190 QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
           +M  R+ VSWTAM++G     +       FR M  +G KP  V+LT +L AC     L  
Sbjct: 429 EMQERDGVSWTAMVAGFATHGHSVEAFLTFRNMILDGFKPDHVSLTAILSACNRSECLLK 488

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
           GK +HG+     +     ++   + MY +C + +  AR IF+ T  KD V+WSS+I GY+
Sbjct: 489 GKEVHGHTLRV-YGETTFINDCFISMYSKC-QGVQTARRIFDATPCKDQVMWSSMISGYA 546

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
            +G   EA+ LF  M    I  +S    +ILS C   +   +   +H Y +KAG+  D S
Sbjct: 547 TNGCGEEAISLFQLMVAASIRIDSYICSSILSLCADIARPFYCKPLHGYAIKAGILSDQS 606

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
           + ++L+ +YS+ G++  S ++F+E++  D V+WTT+I GY  HG  + AL +F  M + G
Sbjct: 607 VSSSLVKVYSRSGNMDDSRKVFDEISVPDLVAWTTIIDGYAQHGSSQNALAMFDLMVQLG 666

Query: 430 VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
           V PD + ++++LSAC+  GLV++    FN++     +   ++HY C VDLLG+SG++ +A
Sbjct: 667 VRPDTVVLVSVLSACSRNGLVEQGFNYFNSMRTAYGVEPELQHYCCMVDLLGRSGRLAEA 726

Query: 490 CKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSES 549
              V +MPMKP   + S+LV+ACR+H    +   + +++ E    ++ ++  LS + + S
Sbjct: 727 KYFVDSMPMKPDLMVWSTLVAACRVHDDTVLGRFVENKIREGN-YDSGSFATLSNILANS 785

Query: 550 GNWLGAEEVWRVMRA-KGLSKSYGFSRI 576
           G+W   EEV R+ +  KG++K  G+S +
Sbjct: 786 GDW---EEVARIRKTMKGVNKEPGWSMV 810



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 143/499 (28%), Positives = 243/499 (48%), Gaps = 14/499 (2%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           Q++C A K G   +  +   ++ + AK  +   A ++F +      + WN+ ++   +NG
Sbjct: 90  QVYCAAWKDGLSGNAYVCTGMVDLLAKSGRLRDALRVFADGDPSSAVCWNAAVSGAVRNG 149

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
               ++EMFR+M        +   +G +S C+   EL +GR +H LV+     E  VFV 
Sbjct: 150 EGGLAVEMFRDMVWGSCEPNSFTYSGALSACAAGEELSVGRAVHGLVLRRDP-EYDVFVG 208

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
           T+L+++Y+KC     A+R F +M +RN VSWT  I+G +      + + L R M R GV 
Sbjct: 209 TSLVNMYAKCGDMGAAMREFWRMPVRNVVSWTTAIAGFVQDDEPVSAMLLLREMVRNGVA 268

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
             + T T +LLACA++  +R    IHG         D  +  AL+  Y          ++
Sbjct: 269 INKYTATSILLACAQMSMVREASQIHGMVLKTEMYLDCVVKEALISTYTNFGFIELSEKV 328

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
             E   V +  IWS+ I G S    L  +++L  RM  + + PN     ++ SS     F
Sbjct: 329 FEEAGTVSNRSIWSAFISGVSNH-SLLRSVQLLRRMFHQGLRPNDKCYASVFSSVNSIEF 387

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
              G  +H   +K G    + +G+AL  MYS+C ++  S+++F EM  RD VSWT +++G
Sbjct: 388 ---GGQLHSSAIKEGFIHGILVGSALSTMYSRCDNVQDSYKVFEEMQERDGVSWTAMVAG 444

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468
           +  HG+  EA   F  M   G +PD +++ AILSACN +  + + + +  + ++      
Sbjct: 445 FATHGHSVEAFLTFRNMILDGFKPDHVSLTAILSACNRSECLLKGKEVHGHTLRVYGETT 504

Query: 469 AIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
            I    C++ +  K   ++ A ++    P K    + SS++S    +G  E A  L   +
Sbjct: 505 FIND--CFISMYSKCQGVQTARRIFDATPCKDQV-MWSSMISGYATNGCGEEAISLFQLM 561

Query: 529 IEAEPENAANYTLLSMVCS 547
           +      AA+  + S +CS
Sbjct: 562 V------AASIRIDSYICS 574


>gi|46403989|gb|AAS93059.1| pentatricopeptide repeat protein [Oryza sativa Japonica Group]
          Length = 810

 Score =  295 bits (756), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 186/568 (32%), Positives = 310/568 (54%), Gaps = 18/568 (3%)

Query: 13  LYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISM 72
           L  +E+  +G+  N     S++ ACA     +    Q+H   LK+    D V+  +LIS 
Sbjct: 257 LLLREMVRNGVAINKYTATSILLACAQMSMVRE-ASQIHGMVLKTEMYLDCVVKEALIST 315

Query: 73  YAKFSKPESAYQLFDEMPYRDTISWNSIINCF---TQNGFYVRSLEMFREMYLCGFVLKA 129
           Y  F   E + ++F+E     T+S  SI + F     N   +RS+++ R M+  G     
Sbjct: 316 YTNFGFIELSEKVFEEA---GTVSNRSIWSAFISGVSNHSLLRSVQLLRRMFHQGLRPND 372

Query: 130 ELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
           +  A + S    +  +E G Q+H+  I +G F   + V +AL  +YS+C +   + +VFE
Sbjct: 373 KCYASVFS---SVNSIEFGGQLHSSAIKEG-FIHGILVGSALSTMYSRCDNVQDSYKVFE 428

Query: 190 QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
           +M  R+ VSWTAM++G     +       FR M  +G KP  V+LT +L AC     L  
Sbjct: 429 EMQERDGVSWTAMVAGFATHGHSVEAFLTFRNMILDGFKPDHVSLTAILSACNRSECLLK 488

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
           GK +HG+     +     ++   + MY +C + +  AR IF+ T  KD V+WSS+I GY+
Sbjct: 489 GKEVHGHTLRV-YGETTFINDCFISMYSKC-QGVQTARRIFDATPCKDQVMWSSMISGYA 546

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
            +G   EA+ LF  M    I  +S    +ILS C   +   +   +H Y +KAG+  D S
Sbjct: 547 TNGCGEEAISLFQLMVAASIRIDSYICSSILSLCADIARPFYCKPLHGYAIKAGILSDQS 606

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
           + ++L+ +YS+ G++  S ++F+E++  D V+WTT+I GY  HG  + AL +F  M + G
Sbjct: 607 VSSSLVKVYSRSGNMDDSRKVFDEISVPDLVAWTTIIDGYAQHGSSQNALAMFDLMVQLG 666

Query: 430 VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
           V PD + ++++LSAC+  GLV++    FN++     +   ++HY C VDLLG+SG++ +A
Sbjct: 667 VRPDTVVLVSVLSACSRNGLVEQGFNYFNSMRTAYGVEPELQHYCCMVDLLGRSGRLAEA 726

Query: 490 CKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSES 549
              V +MPMKP   + S+LV+ACR+H    +   + +++ E    ++ ++  LS + + S
Sbjct: 727 KYFVDSMPMKPDLMVWSTLVAACRVHDDTVLGRFVENKIREGN-YDSGSFATLSNILANS 785

Query: 550 GNWLGAEEVWRVMRA-KGLSKSYGFSRI 576
           G+W   EEV R+ +  KG++K  G+S +
Sbjct: 786 GDW---EEVARIRKTMKGVNKEPGWSMV 810



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 143/499 (28%), Positives = 243/499 (48%), Gaps = 14/499 (2%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           Q++C A K G   +  +   ++ + AK  +   A ++F +      + WN+ ++   +NG
Sbjct: 90  QVYCAAWKDGLSGNAYVCTGMVDLLAKSGRLRDALRVFADGDPSSAVCWNAAVSGAVRNG 149

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
               ++EMFR+M        +   +G +S C+   EL +GR +H LV+     E  VFV 
Sbjct: 150 EGGLAVEMFRDMVWGSCEPNSFTYSGALSACAAGEELSVGRAVHGLVLRRDP-EYDVFVG 208

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
           T+L+++Y+KC     A+R F +M +RN VSWT  I+G +      + + L R M R GV 
Sbjct: 209 TSLVNMYAKCGDMGAAMREFWRMPVRNVVSWTTAIAGFVQDDEPVSAMLLLREMVRNGVA 268

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
             + T T +LLACA++  +R    IHG         D  +  AL+  Y          ++
Sbjct: 269 INKYTATSILLACAQMSMVREASQIHGMVLKTEMYLDCVVKEALISTYTNFGFIELSEKV 328

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
             E   V +  IWS+ I G S    L  +++L  RM  + + PN     ++ SS     F
Sbjct: 329 FEEAGTVSNRSIWSAFISGVSNH-SLLRSVQLLRRMFHQGLRPNDKCYASVFSSVNSIEF 387

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
              G  +H   +K G    + +G+AL  MYS+C ++  S+++F EM  RD VSWT +++G
Sbjct: 388 ---GGQLHSSAIKEGFIHGILVGSALSTMYSRCDNVQDSYKVFEEMQERDGVSWTAMVAG 444

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468
           +  HG+  EA   F  M   G +PD +++ AILSACN +  + + + +  + ++      
Sbjct: 445 FATHGHSVEAFLTFRNMILDGFKPDHVSLTAILSACNRSECLLKGKEVHGHTLRVYGETT 504

Query: 469 AIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
            I    C++ +  K   ++ A ++    P K    + SS++S    +G  E A  L   +
Sbjct: 505 FIND--CFISMYSKCQGVQTARRIFDATPCKDQV-MWSSMISGYATNGCGEEAISLFQLM 561

Query: 529 IEAEPENAANYTLLSMVCS 547
           +      AA+  + S +CS
Sbjct: 562 V------AASIRIDSYICS 574


>gi|302754942|ref|XP_002960895.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
 gi|300171834|gb|EFJ38434.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
          Length = 903

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 177/570 (31%), Positives = 294/570 (51%), Gaps = 18/570 (3%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           Q +   G+      L   +  CA  +  Q     +H    +SG +   V+S +L S YA+
Sbjct: 217 QRMQLEGVRPARITLVIALTVCATIRQAQ----AIHFIVRESGLEQTLVVSTALASAYAR 272

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
                 A ++FD    RD +SWN+++  + Q+G    +  +F  M   G       L   
Sbjct: 273 LGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGISPSKVTLVNA 332

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
            + CS    L  GR IH   +  G  +  + +  ALLD+Y++C     A  +F+++   N
Sbjct: 333 STGCSS---LRFGRMIHGCALEKG-LDRDIVLGNALLDMYTRCGSPEEARHLFKRIPC-N 387

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA----ELRDLRNGK 251
            VSW  MI+G          ++LF+ MQ EG+ P R T   +L A A    E R +  G+
Sbjct: 388 AVSWNTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGR 447

Query: 252 AIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKD---VVIWSSIIRGY 308
            +H     CG+  +  +  A++ MY  C  A+  A   F+R  ++D   VV W++II   
Sbjct: 448 KLHSRIVSCGYASEPAIGTAVVKMYASCG-AIDEAAASFQRGAMEDRHDVVSWNAIISSL 506

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
           SQ G    A+  F RM L  + PN +T +A+L +C   + L+ G  VH ++  +G+  ++
Sbjct: 507 SQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGEIVHDHLRHSGMESNL 566

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAA-RDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
            +  AL +MY +CGS+ S+ +IF ++A  RD V +  +I+ Y  +G   EAL+LF  MQ+
Sbjct: 567 FVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQ 626

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487
            G  PD  + +++LSAC+H GL  E   +F ++ +   IA + +HYAC VD+LG++G + 
Sbjct: 627 EGSRPDEQSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLA 686

Query: 488 DACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCS 547
           DA +++  M +KP+  +  +L+ ACR +  ++   +    + E +P + + Y +LS + +
Sbjct: 687 DAEELIRCMDVKPTVLVWKTLLGACRKYRDVDRGRLANSMVRELDPGDESAYVVLSNILA 746

Query: 548 ESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +G W  A EV   M ++GL K  G S IE
Sbjct: 747 GAGKWDEAAEVRTEMESRGLRKEAGKSWIE 776



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 147/481 (30%), Positives = 240/481 (49%), Gaps = 29/481 (6%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G ++H   +  G + +  + N L+ +Y K        ++F  +  RD  SW +II  +T+
Sbjct: 48  GRRIHARIVSLGLEEE--LGNHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITAYTE 105

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           +G   R++ MF  M   G    A     ++  C+++G+L  GR IHA ++  G    SV 
Sbjct: 106 HGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLKGKSVL 165

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
            +  LL +Y  C     A+ +FE+M  R+ VSW A I+    S +    ++LF+ MQ EG
Sbjct: 166 ANL-LLHIYGSCGCVASAMLLFEKME-RDLVSWNAAIAANAQSGDLGIALELFQRMQLEG 223

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           V+P R+TL I L  CA    +R  +AIH      G +    +S AL   Y      L+ A
Sbjct: 224 VRPARITLVIALTVCA---TIRQAQAIHFIVRESGLEQTLVVSTALASAYARLGH-LYQA 279

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
           + +F+R   +DVV W++++  Y+Q G +SEA  LF+RM  E I P+ VTL+   + C   
Sbjct: 280 KEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGISPSKVTLVNASTGC--- 336

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
           S L  G  +H   ++ GL+ D+ +GNAL++MY++CGS   +  +F  +   + VSW T+I
Sbjct: 337 SSLRFGRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFKRIPC-NAVSWNTMI 395

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC----NHAGLVKEAETLFNNVM- 461
           +G    G  + A++LF  MQ  G+ P   T L +L A       A  + E   L + ++ 
Sbjct: 396 AGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVS 455

Query: 462 ----KEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILS--SLVSACRIH 515
                E  I  A+      V +    G I++A        M+    ++S  +++S+   H
Sbjct: 456 CGYASEPAIGTAV------VKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQH 509

Query: 516 G 516
           G
Sbjct: 510 G 510



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 116/405 (28%), Positives = 199/405 (49%), Gaps = 16/405 (3%)

Query: 145 LELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMIS 204
           L  GR+IHA ++   S  L   +   LL LY KC        VF ++ +R+E SWT +I+
Sbjct: 45  LSQGRRIHARIV---SLGLEEELGNHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIIT 101

Query: 205 GCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDF 264
              +       I +F  MQ+EGV+   VT   VL ACA L DL  G++IH +    G   
Sbjct: 102 AYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLKG 161

Query: 265 DHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM 324
              L+  L+H+Y  C   +  A ++FE+ + +D+V W++ I   +QSGDL  A++LF RM
Sbjct: 162 KSVLANLLLHIYGSCG-CVASAMLLFEKME-RDLVSWNAAIAANAQSGDLGIALELFQRM 219

Query: 325 RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSI 384
           +LE + P  +TL+  L+ C   + +     +H  + ++GL   + +  AL + Y++ G +
Sbjct: 220 QLEGVRPARITLVIALTVC---ATIRQAQAIHFIVRESGLEQTLVVSTALASAYARLGHL 276

Query: 385 TSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
             + ++F+  A RD VSW  ++  Y  HG+  EA  LF  M   G+ P  +T++   + C
Sbjct: 277 YQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGISPSKVTLVNASTGC 336

Query: 445 NHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRI 504
           +     +    + +    EK +   I      +D+  + G  E+A  +   +P    +  
Sbjct: 337 SSLRFGR----MIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFKRIPCNAVS-- 390

Query: 505 LSSLVSACRIHGRLEVA-EMLAHQLIEA-EPENAANYTLLSMVCS 547
            +++++     G+++ A E+     +E   P  A    LL  V S
Sbjct: 391 WNTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVAS 435



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 112/211 (53%), Gaps = 4/211 (1%)

Query: 234 LTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERT 293
           L  +L A  + R L  G+ IH  A       +  L   L+ +Y +C E+L     +F R 
Sbjct: 32  LVRLLRAAGDDRLLSQGRRIH--ARIVSLGLEEELGNHLLRLYLKC-ESLGDVEEVFSRL 88

Query: 294 KVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGL 353
           +V+D   W++II  Y++ G    A+ +F RM+ E +  ++VT LA+L +C R   LS G 
Sbjct: 89  EVRDEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGR 148

Query: 354 GVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHG 413
            +H +I+++GL     + N L+++Y  CG + S+  +F +M  RD VSW   I+     G
Sbjct: 149 SIHAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLLFEKM-ERDLVSWNAAIAANAQSG 207

Query: 414 YGEEALQLFLEMQESGVEPDAITVLAILSAC 444
               AL+LF  MQ  GV P  IT++  L+ C
Sbjct: 208 DLGIALELFQRMQLEGVRPARITLVIALTVC 238


>gi|242056803|ref|XP_002457547.1| hypothetical protein SORBIDRAFT_03g009160 [Sorghum bicolor]
 gi|241929522|gb|EES02667.1| hypothetical protein SORBIDRAFT_03g009160 [Sorghum bicolor]
          Length = 762

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 171/528 (32%), Positives = 288/528 (54%), Gaps = 2/528 (0%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           LH    K G  A  V+ N+L+  Y K     +A ++F EMP+RD+I++N++I   ++ G 
Sbjct: 155 LHPVVTKLGFGASVVVCNTLLDAYCKQGFIAAARRVFLEMPHRDSITYNAMIMGCSRQGR 214

Query: 110 YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVST 169
           +  +LE+F  M   G        + ++++ + + +L LGRQIH L  V  +   +VFV+ 
Sbjct: 215 HGEALELFAAMRREGVDTSHFTFSSLLTVATGMVDLHLGRQIHGL-FVRANPSCNVFVNN 273

Query: 170 ALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKP 229
           ALLD YSKC       ++F++M  R+ VS+  MIS C  ++     + LFR MQ  G   
Sbjct: 274 ALLDFYSKCDSLGDLKQLFDEMSERDNVSYNVMISACSWNRCGGMALQLFRDMQTLGFDR 333

Query: 230 TRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARII 289
             +    +L     L  ++ G+ IH      G   +  +  AL+ MY +C   L  A+ I
Sbjct: 334 RTLPYASLLSVAGALPHIKIGRQIHAQLILHGLTLEDFVGNALIDMYSKCG-MLDAAKTI 392

Query: 290 FERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFL 349
           F     K  + W+++I G  Q+G   EA++LF  MR   + P+  T  +I+ S +  + +
Sbjct: 393 FAYKSDKTAISWTALITGCVQNGQNEEALQLFCDMRRAGLSPDRATCSSIMKSSSSLAVI 452

Query: 350 SHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGY 409
             G  +H Y+ K+G    V  G+AL++MY+KCG +  + + FNEM  ++ ++W  +IS Y
Sbjct: 453 GIGRQLHAYLTKSGHMPSVFSGSALLDMYAKCGCLDEAIRTFNEMPEKNSITWNAVISAY 512

Query: 410 GFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA 469
             +G  + A+++F  M   G+ PD +T L++L+AC H GL +E    F+ +     ++  
Sbjct: 513 AQYGQAKNAIRMFDSMLHCGLCPDPVTFLSVLAACGHNGLAEECMKYFDLMRYYYSMSPW 572

Query: 470 IEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLI 529
            EHY+C +D LG++G  +   KV+  MP +    I SS++ +CRI+G  ++A + A +L 
Sbjct: 573 KEHYSCVIDTLGRAGCFDKIQKVIDEMPFEDDPIIWSSILHSCRIYGNQDLATVAAEKLF 632

Query: 530 EAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
              P +A  Y +LS + +++GNW GA  V ++MR +G+ K  G S +E
Sbjct: 633 TMVPTDATAYVILSNIYAKAGNWEGAARVKKIMRDRGVKKESGNSWVE 680



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 110/429 (25%), Positives = 204/429 (47%), Gaps = 16/429 (3%)

Query: 45  HFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCF 104
           H G Q+H   +++    +  ++N+L+  Y+K        QLFDEM  RD +S+N +I+  
Sbjct: 251 HLGRQIHGLFVRANPSCNVFVNNALLDFYSKCDSLGDLKQLFDEMSERDNVSYNVMISAC 310

Query: 105 TQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELS 164
           + N     +L++FR+M   GF  +    A ++S+   +  +++GRQIHA +I+ G   L 
Sbjct: 311 SWNRCGGMALQLFRDMQTLGFDRRTLPYASLLSVAGALPHIKIGRQIHAQLILHG-LTLE 369

Query: 165 VFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR 224
            FV  AL+D+YSKC     A  +F     +  +SWTA+I+GC+ +   +  + LF  M+R
Sbjct: 370 DFVGNALIDMYSKCGMLDAAKTIFAYKSDKTAISWTALITGCVQNGQNEEALQLFCDMRR 429

Query: 225 EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
            G+ P R T + ++ + + L  +  G+ +H Y    G        +AL+ MY +C   L 
Sbjct: 430 AGLSPDRATCSSIMKSSSSLAVIGIGRQLHAYLTKSGHMPSVFSGSALLDMYAKCG-CLD 488

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
            A   F     K+ + W+++I  Y+Q G    A+++F  M    + P+ VT L++L++C 
Sbjct: 489 EAIRTFNEMPEKNSITWNAVISAYAQYGQAKNAIRMFDSMLHCGLCPDPVTFLSVLAACG 548

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIG------NALMNMYSKCGSITSSHQIFNEMA-AR 397
                 +GL   C      + +  S+       + +++   + G      ++ +EM    
Sbjct: 549 H-----NGLAEECMKYFDLMRYYYSMSPWKEHYSCVIDTLGRAGCFDKIQKVIDEMPFED 603

Query: 398 DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLF 457
           D + W++++  +    YG + L      +   + P   T   ILS         E     
Sbjct: 604 DPIIWSSIL--HSCRIYGNQDLATVAAEKLFTMVPTDATAYVILSNIYAKAGNWEGAARV 661

Query: 458 NNVMKEKKI 466
             +M+++ +
Sbjct: 662 KKIMRDRGV 670



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 113/442 (25%), Positives = 181/442 (40%), Gaps = 47/442 (10%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           QTL   ++ L  + L S    LP           H   G Q+H   +  G   +  + N+
Sbjct: 327 QTLGFDRRTLPYASLLSVAGALP-----------HIKIGRQIHAQLILHGLTLEDFVGNA 375

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           LI MY+K    ++A  +F     +  ISW ++I    QNG    +L++F +M   G    
Sbjct: 376 LIDMYSKCGMLDAAKTIFAYKSDKTAISWTALITGCVQNGQNEEALQLFCDMRRAGLSPD 435

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
               + I+   S +  + +GRQ+HA +   G    SVF  +ALLD+Y+KC     A+R F
Sbjct: 436 RATCSSIMKSSSSLAVIGIGRQLHAYLTKSGHMP-SVFSGSALLDMYAKCGCLDEAIRTF 494

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
            +M  +N ++W A+IS           I +F +M   G+ P  VT   VL AC       
Sbjct: 495 NEMPEKNSITWNAVISAYAQYGQAKNAIRMFDSMLHCGLCPDPVTFLSVLAACGH----- 549

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYC--------ECTEALHPARIIFERTKVKDVVI 300
           NG A     Y     + + +S    H  C         C + +   ++I E     D +I
Sbjct: 550 NGLAEECMKYFDLMRYYYSMSPWKEHYSCVIDTLGRAGCFDKIQ--KVIDEMPFEDDPII 607

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           WSSI+      G+  + +   +  +L  + P   T   ILS+   ++    G      IM
Sbjct: 608 WSSILHSCRIYGN--QDLATVAAEKLFTMVPTDATAYVILSNIYAKAGNWEGAARVKKIM 665

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
           +         GN+ + +  K   + SS+   N M                     +E  +
Sbjct: 666 R-DRGVKKESGNSWVEIKQKI-YMFSSNDHTNPM----------------IDEIKKELER 707

Query: 421 LFLEMQESGVEPDAITVLAILS 442
           L+ EM + G EPD    L ++S
Sbjct: 708 LYEEMDKQGYEPDTSCALHMVS 729


>gi|225441064|ref|XP_002277923.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g03800-like [Vitis vinifera]
          Length = 882

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 185/570 (32%), Positives = 300/570 (52%), Gaps = 38/570 (6%)

Query: 46  FGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT 105
            G QLH   +K G      +SN+L+ +Y K    +S  QLFDEMP+RD  SWN++I+   
Sbjct: 189 LGCQLHAIVIKMGFLNYTFVSNALMGLYGKCGYLDSVLQLFDEMPHRDIASWNTVISSVV 248

Query: 106 QNGFYVRSLEMFREMY-LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELS 164
           +   Y R+ E+FR+M  + GF +    L+ I+     +  + +GR+IHA VI  G FE +
Sbjct: 249 KEMMYERAFELFRDMRRIDGFRIDHFTLSTILVAARGLASM-VGREIHAHVIKIG-FESN 306

Query: 165 VFVSTALLDLYSKCHH------------------WL-------------IALRVFEQMVI 193
           + V  AL+  Y+KC                    W              +AL VF++M  
Sbjct: 307 ISVINALIRFYTKCGSIKHVVALFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMPA 366

Query: 194 RNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAI 253
           RN +S+ A++SG   +      +  F  M  EGV+ T  TLT VL AC  L + +  K I
Sbjct: 367 RNSISYNAILSGFCQNGEGSKALAFFCRMVEEGVELTDFTLTGVLNACGLLMEAKISKQI 426

Query: 254 HGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDV-VIWSSIIRGYSQSG 312
           HG+    GF  +  + AAL+ M   C       ++  + +  +   +IW+S+I GY+++ 
Sbjct: 427 HGFILKFGFGSNACIEAALLDMCTRCGRMADAQKMFSQGSFSQSGSIIWTSMICGYARNA 486

Query: 313 DLSEAMKLFSRMRLE-RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
              EA+ LF + +LE  +  + V   A+L  C   +F   G  +HC+ +K+G   D+ +G
Sbjct: 487 QPEEAISLFCQSQLEGAMVVDKVASTAVLGVCGTLAFHEMGKQIHCHALKSGFLSDLGVG 546

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
           N+++ MYSKC ++  + ++FN M A D VSW  LI+G+  H  G+EAL ++ +M+++G++
Sbjct: 547 NSIITMYSKCSNMDDAIKVFNVMPAHDIVSWNGLIAGHLLHRQGDEALSVWSKMEKAGIK 606

Query: 432 PDAITVLAILSACNH--AGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
           PD +T + I+SA  H  + LV     LF ++     I   +EHY   V +LG  G +E+A
Sbjct: 607 PDTVTFVLIISAYRHTNSNLVDNCRRLFLSMKTIYHIDPTVEHYTSLVGVLGYWGLLEEA 666

Query: 490 CKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSES 549
            ++++ MP++P   +  +L+ ACRIH    + +  A  L+  +P + + Y L+S + S  
Sbjct: 667 EEMINKMPIEPEASVWRALLDACRIHSNTTIGKRAAKHLLAMKPLDPSTYILVSNLYSAY 726

Query: 550 GNWLGAEEVWRVMRAKGLSKSYGFSRIENE 579
           G W  ++ V   MR KG  K  G S I +E
Sbjct: 727 GRWHCSDMVREEMRVKGFRKHPGRSWIIHE 756



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 126/484 (26%), Positives = 234/484 (48%), Gaps = 43/484 (8%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           +H +  K   D    ++N+LI  Y K     +AY++F  +   + +S+ ++I+ F ++  
Sbjct: 94  VHASIFKLAEDIH--LANALIVAYLKLGMVPNAYKVFVGLSCPNVVSYTAMISGFAKSNR 151

Query: 110 YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVST 169
             +++E+F  M   G  L       I+++C ++ +LELG Q+HA+VI  G    + FVS 
Sbjct: 152 ERQAMEIFFRMRSSGIELNEFSFVAILTVCIRLLDLELGCQLHAIVIKMGFLNYT-FVSN 210

Query: 170 ALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR-EGVK 228
           AL+ LY KC +    L++F++M  R+  SW  +IS  +    Y+   +LFR M+R +G +
Sbjct: 211 ALMGLYGKCGYLDSVLQLFDEMPHRDIASWNTVISSVVKEMMYERAFELFRDMRRIDGFR 270

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
               TL+ +L+A   L  +  G+ IH +    GF+ +  +  AL+  Y +C    H    
Sbjct: 271 IDHFTLSTILVAARGLASMV-GREIHAHVIKIGFESNISVINALIRFYTKCGSIKHVVA- 328

Query: 289 IFERTKVKDVVIWS-------------------------------SIIRGYSQSGDLSEA 317
           +FE+ +V+DV+ W+                               +I+ G+ Q+G+ S+A
Sbjct: 329 LFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMPARNSISYNAILSGFCQNGEGSKA 388

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
           +  F RM  E +E    TL  +L++C           +H +I+K G   +  I  AL++M
Sbjct: 389 LAFFCRMVEEGVELTDFTLTGVLNACGLLMEAKISKQIHGFILKFGFGSNACIEAALLDM 448

Query: 378 YSKCGSITSSHQI--FNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ-ESGVEPDA 434
            ++CG +  + ++      +    + WT++I GY  +   EEA+ LF + Q E  +  D 
Sbjct: 449 CTRCGRMADAQKMFSQGSFSQSGSIIWTSMICGYARNAQPEEAISLFCQSQLEGAMVVDK 508

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIA-LAIEHYACYVDLLGKSGKIEDACKVV 493
           +   A+L  C      +  + +  + +K   ++ L + +    + +  K   ++DA KV 
Sbjct: 509 VASTAVLGVCGTLAFHEMGKQIHCHALKSGFLSDLGVGN--SIITMYSKCSNMDDAIKVF 566

Query: 494 STMP 497
           + MP
Sbjct: 567 NVMP 570



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 98/354 (27%), Positives = 164/354 (46%), Gaps = 44/354 (12%)

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELS--VFVSTALLDLYSKCHHWLIALRVFEQMV 192
           ++ L  +  ++EL + +HA +     F+L+  + ++ AL+  Y K      A +VF  + 
Sbjct: 78  LLDLSVRYDDVELIKAVHASI-----FKLAEDIHLANALIVAYLKLGMVPNAYKVFVGLS 132

Query: 193 IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKA 252
             N VS+TAMISG   S      +++F  M+  G++    +   +L  C  L DL  G  
Sbjct: 133 CPNVVSYTAMISGFAKSNRERQAMEIFFRMRSSGIELNEFSFVAILTVCIRLLDLELGCQ 192

Query: 253 IHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSG 312
           +H      GF     +S ALM +Y +C   L     +F+    +D+  W+++I    +  
Sbjct: 193 LHAIVIKMGFLNYTFVSNALMGLYGKCG-YLDSVLQLFDEMPHRDIASWNTVISSVVKEM 251

Query: 313 DLSEAMKLFSRM-RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
               A +LF  M R++    +  TL  IL +    + +  G  +H +++K G   ++S+ 
Sbjct: 252 MYERAFELFRDMRRIDGFRIDHFTLSTILVAARGLASMV-GREIHAHVIKIGFESNISVI 310

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGY---------------------- 409
           NAL+  Y+KCGSI     +F +M  RD ++WT +I+ Y                      
Sbjct: 311 NALIRFYTKCGSIKHVVALFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMPARNSI 370

Query: 410 -------GF--HGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAE 454
                  GF  +G G +AL  F  M E GVE    T+  +L+AC   GL+ EA+
Sbjct: 371 SYNAILSGFCQNGEGSKALAFFCRMVEEGVELTDFTLTGVLNAC---GLLMEAK 421



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 1/94 (1%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E+ + L+ Q      +  +     +V+  C     H+  G Q+HC ALKSG  +D  + N
Sbjct: 489 EEAISLFCQSQLEGAMVVDKVASTAVLGVCGTLAFHE-MGKQIHCHALKSGFLSDLGVGN 547

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSII 101
           S+I+MY+K S  + A ++F+ MP  D +SWN +I
Sbjct: 548 SIITMYSKCSNMDDAIKVFNVMPAHDIVSWNGLI 581


>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 178/531 (33%), Positives = 284/531 (53%), Gaps = 22/531 (4%)

Query: 53  TALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIIN-CFTQNGFYV 111
           T     S  D  +   +I+ YA+  + + A QLF EMP +D +SWNS+I  CF      +
Sbjct: 16  TVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSWNSMIKGCFDCADLTM 75

Query: 112 RSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTAL 171
            + ++F EM     V    ++ G +    Q G++E         + +G F    F   A 
Sbjct: 76  -ARKLFDEMPERSVVSWTTMINGFL----QFGKIE---------VAEGLFYKMPFRDIAA 121

Query: 172 LD--LYSKCHHWLI--ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV 227
            +  +Y  C +  +   LR+F++M  RN +SWT+MI G       +  + LFR M   GV
Sbjct: 122 WNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGV 181

Query: 228 --KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
             KPT  T   V+ ACA    L  G  IH + +  G+ FD ++SAAL+  Y  C +    
Sbjct: 182 EVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDS 241

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
            R+   +  + +VVIW++++ GY  +    +A+K+F  M  E + PN  +  + L+SC  
Sbjct: 242 LRVFHGKLHM-NVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCG 300

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
              L  G  +H   +K GL  DV +GN+L+ MY +CG++     IF  ++ ++ VSW ++
Sbjct: 301 LEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSV 360

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           I G   HG G  AL  F +M  S VEPD IT   +LSAC+H+G+ ++   LF    + K 
Sbjct: 361 IVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKS 420

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
             + ++HYAC VD+LG+SGK+E+A +++  MP+K ++ +   L+SAC +H +LEVAE  A
Sbjct: 421 AEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAERAA 480

Query: 526 HQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
             +I+ EP  ++ Y LLS + + +  W     + R M+ +G++K  G S I
Sbjct: 481 KCIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWI 531



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 110/451 (24%), Positives = 190/451 (42%), Gaps = 70/451 (15%)

Query: 8   EQTLHLYKQ------ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           E+ L L++Q      E+ P+     ++    VI ACA A    + G+Q+H    K G   
Sbjct: 167 EEALGLFRQMMGCGVEVKPT-----SSTYCCVITACANASA-LYQGVQIHAHVFKLGYSF 220

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D  IS +LI+ YA   + E + ++F    + + + W +++  +  N  +  +L++F EM 
Sbjct: 221 DAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMM 280

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
             G +         ++ C  +  L+ GR+IH   +  G  E  VFV  +L+ +Y +C + 
Sbjct: 281 REGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLG-LETDVFVGNSLIVMYYRCGNL 339

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
              + +F+++  +N VSW ++I GC         +  F  M R  V+P  +T T +L AC
Sbjct: 340 NDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSAC 399

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           +     + G+ +  Y     F  +      L H  C                 + D++  
Sbjct: 400 SHSGMSQKGRCLFKY-----FSENKSAEVKLDHYAC-----------------MVDIL-- 435

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
                   +SG L EA +L   M    ++ NS+  L +LS+CT  S L     V     K
Sbjct: 436 -------GRSGKLEEAEELIRNM---PVKANSMVWLVLLSACTMHSKLE----VAERAAK 481

Query: 362 AGLNFDVSIGNA---LMNMYSKCGSITSSHQIFNEMAARDFV-----SWTTL-------I 406
             ++ +    +A   L N+Y+     +   +I  EM  R        SW T+       +
Sbjct: 482 CIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWITIKGWRNEFL 541

Query: 407 SGYGFHGYGEEALQ----LFLEMQESGVEPD 433
           SG   H   +   Q    L  +++E G  PD
Sbjct: 542 SGDRSHPSSDRIYQKLEWLGGKLKELGYVPD 572



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/293 (21%), Positives = 136/293 (46%), Gaps = 40/293 (13%)

Query: 280 TEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAI 339
            + +  AR +F++    DV +++ +I GY+++     A++LF  M ++ +    V+  ++
Sbjct: 8   NQRIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVKDV----VSWNSM 63

Query: 340 LSSC----------------TRQSFLSHGLGVHCYI------MKAGLNF-----DVSIGN 372
           +  C                  +S +S    ++ ++      +  GL +     D++  N
Sbjct: 64  IKGCFDCADLTMARKLFDEMPERSVVSWTTMINGFLQFGKIEVAEGLFYKMPFRDIAAWN 123

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE- 431
           +++  Y   G +    ++F EM  R+ +SWT++I G   HG  EEAL LF +M   GVE 
Sbjct: 124 SMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEV 183

Query: 432 -PDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIED 488
            P + T   +++AC +A  + +   +  +V    K+  + + Y  A  +       ++ED
Sbjct: 184 KPTSSTYCCVITACANASALYQGVQIHAHVF---KLGYSFDAYISAALITFYANCKQMED 240

Query: 489 ACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA-EMLAHQLIEAEPENAANYT 540
           + +V     +  +  I ++LV+   ++ + E A ++    + E    N +++T
Sbjct: 241 SLRVFHG-KLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFT 292


>gi|255568474|ref|XP_002525211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535508|gb|EEF37177.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 654

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 171/562 (30%), Positives = 301/562 (53%), Gaps = 35/562 (6%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           QLH   +      +  +++ L+++Y+K +    A  +FD++P+++T S+N+++  ++ + 
Sbjct: 45  QLHARLILFSVTPENYLASKLVALYSKTNHLAFARYVFDQIPHKNTFSYNAMLISYSLHN 104

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCS-QIGELELGRQIHALVIVDGSFELSVFV 167
            +  +L++F  +     V    +   + SL S  + +++LG+++H  V+  G F+  VFV
Sbjct: 105 RHGDALDLFSSLASSNLVNNISITCLLKSLSSFTLSDVKLGKEVHGFVLRTG-FDADVFV 163

Query: 168 STALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM-QREG 226
             AL+  YSKC+   ++ +VF++M  R+ VSW +MISG      Y+    L+R M    G
Sbjct: 164 ENALITYYSKCYDLDLSRKVFDRMTKRDVVSWNSMISGYSQGGLYEDCKTLYREMVDFSG 223

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
            +P  VT+  VL AC + +DL  G  +H +      + D  +  AL+ +Y +C  +L  A
Sbjct: 224 FRPNGVTVVSVLQACGQTQDLAFGMEVHKFIVDNQVEIDISVCNALIGLYAKCG-SLDYA 282

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI----------------- 329
           R +F+    KD V + +II G    G + ++++LF  M+ + +                 
Sbjct: 283 RELFDEMSEKDEVTYGAIISGLMLHGYVDQSLELFRGMKTQILSTWNAVITGLVQNNRHE 342

Query: 330 --------------EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
                          PN+VTL ++LS+    S L  G  +H Y +K G + ++ +  A++
Sbjct: 343 GVLDLVREMQALGFRPNAVTLSSVLSTIAYFSSLKGGKEIHSYAIKIGYHRNIYVATAII 402

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           +MY+K G +  + ++F++   R  V WT +IS Y  HG    AL LF EM + G++PD +
Sbjct: 403 DMYAKSGYLRGAQRVFDQSKDRSLVIWTAIISAYAVHGDANLALGLFHEMLKQGIQPDPV 462

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           T  A+L+AC H G+V +A  +F ++ K+  I   +EHYAC V  LGK+ ++ +A + VS 
Sbjct: 463 TFTAVLAACAHCGMVDKAWEIFESMFKKYGIQPLVEHYACVVGALGKARRLSEAKEFVSK 522

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGA 555
           MP++PS ++  +L+    I   +E+ + +   L E EPEN  NY +++ + S++G W  A
Sbjct: 523 MPIEPSAKVWGALLHGASISSDVELGKSVCDYLFEIEPENTGNYVIMANLYSQAGRWKEA 582

Query: 556 EEVWRVMRAKGLSKSYGFSRIE 577
           +EV   M   GL K  G S IE
Sbjct: 583 DEVRERMNKVGLQKIPGSSWIE 604



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 107/358 (29%), Positives = 185/358 (51%), Gaps = 34/358 (9%)

Query: 18  LHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFS 77
           L  S L +N +I   +    ++  +    G ++H   L++G DAD  + N+LI+ Y+K  
Sbjct: 116 LASSNLVNNISITCLLKSLSSFTLSDVKLGKEVHGFVLRTGFDADVFVENALITYYSKCY 175

Query: 78  KPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY-LCGFVLKAELLAGII 136
             + + ++FD M  RD +SWNS+I+ ++Q G Y     ++REM    GF      +  ++
Sbjct: 176 DLDLSRKVFDRMTKRDVVSWNSMISGYSQGGLYEDCKTLYREMVDFSGFRPNGVTVVSVL 235

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
             C Q  +L  G ++H   IVD   E+ + V  AL+ LY+KC     A  +F++M  ++E
Sbjct: 236 QACGQTQDLAFGMEVHKF-IVDNQVEIDISVCNALIGLYAKCGSLDYARELFDEMSEKDE 294

Query: 197 V-------------------------------SWTAMISGCIDSQNYDTGIDLFRAMQRE 225
           V                               +W A+I+G + +  ++  +DL R MQ  
Sbjct: 295 VTYGAIISGLMLHGYVDQSLELFRGMKTQILSTWNAVITGLVQNNRHEGVLDLVREMQAL 354

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
           G +P  VTL+ VL   A    L+ GK IH YA   G+  + +++ A++ MY + +  L  
Sbjct: 355 GFRPNAVTLSSVLSTIAYFSSLKGGKEIHSYAIKIGYHRNIYVATAIIDMYAK-SGYLRG 413

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC 343
           A+ +F+++K + +VIW++II  Y+  GD + A+ LF  M  + I+P+ VT  A+L++C
Sbjct: 414 AQRVFDQSKDRSLVIWTAIISAYAVHGDANLALGLFHEMLKQGIQPDPVTFTAVLAAC 471



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 108/426 (25%), Positives = 192/426 (45%), Gaps = 80/426 (18%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
            YE    LY++ +  SG   N   + SV++AC   Q    FG+++H   + +  + D  +
Sbjct: 207 LYEDCKTLYREMVDFSGFRPNGVTVVSVLQACGQTQDLA-FGMEVHKFIVDNQVEIDISV 265

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTI------------------------------ 95
            N+LI +YAK    + A +LFDEM  +D +                              
Sbjct: 266 CNALIGLYAKCGSLDYARELFDEMSEKDEVTYGAIISGLMLHGYVDQSLELFRGMKTQIL 325

Query: 96  -SWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHAL 154
            +WN++I    QN  +   L++ REM   GF   A  L+ ++S  +    L+ G++IH+ 
Sbjct: 326 STWNAVITGLVQNNRHEGVLDLVREMQALGFRPNAVTLSSVLSTIAYFSSLKGGKEIHSY 385

Query: 155 VIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDT 214
            I  G +  +++V+TA++D+Y+K  +   A RVF+Q   R+ V WTA+IS      + + 
Sbjct: 386 AIKIG-YHRNIYVATAIIDMYAKSGYLRGAQRVFDQSKDRSLVIWTAIISAYAVHGDANL 444

Query: 215 GIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMH 274
            + LF  M ++G++P  VT T VL ACA                 CG          ++ 
Sbjct: 445 ALGLFHEMLKQGIQPDPVTFTAVLAACAH----------------CG----------MVD 478

Query: 275 MYCECTEALHPARIIFERTKVKDVVI-WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNS 333
              E  E++      F++  ++ +V  ++ ++    ++  LSEA +  S+M    IEP++
Sbjct: 479 KAWEIFESM------FKKYGIQPLVEHYACVVGALGKARRLSEAKEFVSKM---PIEPSA 529

Query: 334 VTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNA-----LMNMYSKCGSITSSH 388
               A+L   +  S +  G  V  Y+      F++   N      + N+YS+ G    + 
Sbjct: 530 KVWGALLHGASISSDVELGKSVCDYL------FEIEPENTGNYVIMANLYSQAGRWKEAD 583

Query: 389 QIFNEM 394
           ++   M
Sbjct: 584 EVRERM 589



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 71/151 (47%), Gaps = 2/151 (1%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           +V  + +E  L L + E+   G   N   L SV+   AY  + +  G ++H  A+K G  
Sbjct: 335 LVQNNRHEGVLDLVR-EMQALGFRPNAVTLSSVLSTIAYFSSLKG-GKEIHSYAIKIGYH 392

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
            +  ++ ++I MYAK      A ++FD+   R  + W +II+ +  +G    +L +F EM
Sbjct: 393 RNIYVATAIIDMYAKSGYLRGAQRVFDQSKDRSLVIWTAIISAYAVHGDANLALGLFHEM 452

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQI 151
              G          +++ C+  G ++   +I
Sbjct: 453 LKQGIQPDPVTFTAVLAACAHCGMVDKAWEI 483


>gi|297740028|emb|CBI30210.3| unnamed protein product [Vitis vinifera]
          Length = 900

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 185/570 (32%), Positives = 300/570 (52%), Gaps = 38/570 (6%)

Query: 46  FGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT 105
            G QLH   +K G      +SN+L+ +Y K    +S  QLFDEMP+RD  SWN++I+   
Sbjct: 207 LGCQLHAIVIKMGFLNYTFVSNALMGLYGKCGYLDSVLQLFDEMPHRDIASWNTVISSVV 266

Query: 106 QNGFYVRSLEMFREMY-LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELS 164
           +   Y R+ E+FR+M  + GF +    L+ I+     +  + +GR+IHA VI  G FE +
Sbjct: 267 KEMMYERAFELFRDMRRIDGFRIDHFTLSTILVAARGLASM-VGREIHAHVIKIG-FESN 324

Query: 165 VFVSTALLDLYSKCHH------------------WL-------------IALRVFEQMVI 193
           + V  AL+  Y+KC                    W              +AL VF++M  
Sbjct: 325 ISVINALIRFYTKCGSIKHVVALFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMPA 384

Query: 194 RNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAI 253
           RN +S+ A++SG   +      +  F  M  EGV+ T  TLT VL AC  L + +  K I
Sbjct: 385 RNSISYNAILSGFCQNGEGSKALAFFCRMVEEGVELTDFTLTGVLNACGLLMEAKISKQI 444

Query: 254 HGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDV-VIWSSIIRGYSQSG 312
           HG+    GF  +  + AAL+ M   C       ++  + +  +   +IW+S+I GY+++ 
Sbjct: 445 HGFILKFGFGSNACIEAALLDMCTRCGRMADAQKMFSQGSFSQSGSIIWTSMICGYARNA 504

Query: 313 DLSEAMKLFSRMRLE-RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
              EA+ LF + +LE  +  + V   A+L  C   +F   G  +HC+ +K+G   D+ +G
Sbjct: 505 QPEEAISLFCQSQLEGAMVVDKVASTAVLGVCGTLAFHEMGKQIHCHALKSGFLSDLGVG 564

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
           N+++ MYSKC ++  + ++FN M A D VSW  LI+G+  H  G+EAL ++ +M+++G++
Sbjct: 565 NSIITMYSKCSNMDDAIKVFNVMPAHDIVSWNGLIAGHLLHRQGDEALSVWSKMEKAGIK 624

Query: 432 PDAITVLAILSACNH--AGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
           PD +T + I+SA  H  + LV     LF ++     I   +EHY   V +LG  G +E+A
Sbjct: 625 PDTVTFVLIISAYRHTNSNLVDNCRRLFLSMKTIYHIDPTVEHYTSLVGVLGYWGLLEEA 684

Query: 490 CKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSES 549
            ++++ MP++P   +  +L+ ACRIH    + +  A  L+  +P + + Y L+S + S  
Sbjct: 685 EEMINKMPIEPEASVWRALLDACRIHSNTTIGKRAAKHLLAMKPLDPSTYILVSNLYSAY 744

Query: 550 GNWLGAEEVWRVMRAKGLSKSYGFSRIENE 579
           G W  ++ V   MR KG  K  G S I +E
Sbjct: 745 GRWHCSDMVREEMRVKGFRKHPGRSWIIHE 774



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 127/484 (26%), Positives = 234/484 (48%), Gaps = 43/484 (8%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           +H +  K   D    ++N+LI  Y K     +AY++F  +   + +S+ ++I+ F ++  
Sbjct: 112 VHASIFKLAEDIH--LANALIVAYLKLGMVPNAYKVFVGLSCPNVVSYTAMISGFAKSNR 169

Query: 110 YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVST 169
             +++E+F  M   G  L       I+++C ++ +LELG Q+HA+VI  G F    FVS 
Sbjct: 170 ERQAMEIFFRMRSSGIELNEFSFVAILTVCIRLLDLELGCQLHAIVIKMG-FLNYTFVSN 228

Query: 170 ALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR-EGVK 228
           AL+ LY KC +    L++F++M  R+  SW  +IS  +    Y+   +LFR M+R +G +
Sbjct: 229 ALMGLYGKCGYLDSVLQLFDEMPHRDIASWNTVISSVVKEMMYERAFELFRDMRRIDGFR 288

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
               TL+ +L+A   L  +  G+ IH +    GF+ +  +  AL+  Y +C    H    
Sbjct: 289 IDHFTLSTILVAARGLASMV-GREIHAHVIKIGFESNISVINALIRFYTKCGSIKHVVA- 346

Query: 289 IFERTKVKDVVIWS-------------------------------SIIRGYSQSGDLSEA 317
           +FE+ +V+DV+ W+                               +I+ G+ Q+G+ S+A
Sbjct: 347 LFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMPARNSISYNAILSGFCQNGEGSKA 406

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
           +  F RM  E +E    TL  +L++C           +H +I+K G   +  I  AL++M
Sbjct: 407 LAFFCRMVEEGVELTDFTLTGVLNACGLLMEAKISKQIHGFILKFGFGSNACIEAALLDM 466

Query: 378 YSKCGSITSSHQI--FNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ-ESGVEPDA 434
            ++CG +  + ++      +    + WT++I GY  +   EEA+ LF + Q E  +  D 
Sbjct: 467 CTRCGRMADAQKMFSQGSFSQSGSIIWTSMICGYARNAQPEEAISLFCQSQLEGAMVVDK 526

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIA-LAIEHYACYVDLLGKSGKIEDACKVV 493
           +   A+L  C      +  + +  + +K   ++ L + +    + +  K   ++DA KV 
Sbjct: 527 VASTAVLGVCGTLAFHEMGKQIHCHALKSGFLSDLGVGN--SIITMYSKCSNMDDAIKVF 584

Query: 494 STMP 497
           + MP
Sbjct: 585 NVMP 588



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 98/354 (27%), Positives = 164/354 (46%), Gaps = 44/354 (12%)

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELS--VFVSTALLDLYSKCHHWLIALRVFEQMV 192
           ++ L  +  ++EL + +HA +     F+L+  + ++ AL+  Y K      A +VF  + 
Sbjct: 96  LLDLSVRYDDVELIKAVHASI-----FKLAEDIHLANALIVAYLKLGMVPNAYKVFVGLS 150

Query: 193 IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKA 252
             N VS+TAMISG   S      +++F  M+  G++    +   +L  C  L DL  G  
Sbjct: 151 CPNVVSYTAMISGFAKSNRERQAMEIFFRMRSSGIELNEFSFVAILTVCIRLLDLELGCQ 210

Query: 253 IHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSG 312
           +H      GF     +S ALM +Y +C   L     +F+    +D+  W+++I    +  
Sbjct: 211 LHAIVIKMGFLNYTFVSNALMGLYGKCG-YLDSVLQLFDEMPHRDIASWNTVISSVVKEM 269

Query: 313 DLSEAMKLFSRM-RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
               A +LF  M R++    +  TL  IL +    + +  G  +H +++K G   ++S+ 
Sbjct: 270 MYERAFELFRDMRRIDGFRIDHFTLSTILVAARGLASMV-GREIHAHVIKIGFESNISVI 328

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGY---------------------- 409
           NAL+  Y+KCGSI     +F +M  RD ++WT +I+ Y                      
Sbjct: 329 NALIRFYTKCGSIKHVVALFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMPARNSI 388

Query: 410 -------GF--HGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAE 454
                  GF  +G G +AL  F  M E GVE    T+  +L+AC   GL+ EA+
Sbjct: 389 SYNAILSGFCQNGEGSKALAFFCRMVEEGVELTDFTLTGVLNAC---GLLMEAK 439



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 1/94 (1%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E+ + L+ Q      +  +     +V+  C     H+  G Q+HC ALKSG  +D  + N
Sbjct: 507 EEAISLFCQSQLEGAMVVDKVASTAVLGVCGTLAFHE-MGKQIHCHALKSGFLSDLGVGN 565

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSII 101
           S+I+MY+K S  + A ++F+ MP  D +SWN +I
Sbjct: 566 SIITMYSKCSNMDDAIKVFNVMPAHDIVSWNGLI 599


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 169/492 (34%), Positives = 273/492 (55%), Gaps = 13/492 (2%)

Query: 96  SWNSIINCFT------QNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGR 149
           S NS++  F        NG   R  E   EM + G  +       +++ C     L  G+
Sbjct: 15  SPNSVLQTFRPISQLCSNG---RLQEALLEMVMLGPEIGFHCYDALLNACLDKRALREGQ 71

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
           ++HA +I    +  + ++ T LL  Y KC     A +V ++M  +N VSWTAMIS    +
Sbjct: 72  RVHAHMI-KTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQT 130

Query: 210 QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS 269
            +    + +F  M R   KP   T   VL +C     L  GK IHG      +D    + 
Sbjct: 131 GHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQIHGLIVKWNYDSHIFVG 190

Query: 270 AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
           ++L+ MY +  + +  AR IFE    +DVV  ++II GY+Q G   EA+++F R++ E +
Sbjct: 191 SSLLDMYAKAGQ-IEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGM 249

Query: 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
            PN VT  ++L++ +  + L HG   HC++++  L F   + N+L++MYSKCG+++ + +
Sbjct: 250 RPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAQR 309

Query: 390 IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ-ESGVEPDAITVLAILSACNHAG 448
           +F+ M  R  +SW  ++ GY  HG G E L+LF  M+ E  V+PDA+T+LA+LS C+H  
Sbjct: 310 LFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGK 369

Query: 449 LVKEAETLFNN-VMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSS 507
           +     ++++  V  E  I    EHY C VD+LG++G+I++A + +  MP KP+  +L S
Sbjct: 370 MEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGS 429

Query: 508 LVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567
           L+ ACR+H  +++ E + H+LIE EPENA NY +LS + + +G W     V  +M  K +
Sbjct: 430 LLGACRVHLSVDIGEYVGHRLIEIEPENAGNYVILSNLYASAGRWEDVNNVRAMMMQKAV 489

Query: 568 SKSYGFSRIENE 579
           +K  G S I++E
Sbjct: 490 TKEPGRSWIQHE 501



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/354 (28%), Positives = 183/354 (51%), Gaps = 5/354 (1%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G ++H   +K+       +   L+  Y K    E A ++ DEMP ++ +SW ++I+ ++Q
Sbjct: 70  GQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQ 129

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
            G    +L +F EM            A +++ C +   L LG+QIH L IV  +++  +F
Sbjct: 130 TGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQIHGL-IVKWNYDSHIF 188

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           V ++LLD+Y+K      A  +FE +  R+ VS TA+I+G       +  +++F+ +Q EG
Sbjct: 189 VGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEG 248

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           ++P  VT   +L A + L  L +GK  H +       F   L  +L+ MY +C   L  A
Sbjct: 249 MRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGN-LSYA 307

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE-RIEPNSVTLLAILSSCTR 345
           + +F+    +  + W++++ GYS+ G   E ++LF  MR E R++P++VTLLA+LS C+ 
Sbjct: 308 QRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSH 367

Query: 346 QSFLSHGLGVHCYIMKA--GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR 397
                 GL ++  ++    G+  D      +++M  + G I  + +    M ++
Sbjct: 368 GKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAFEFIKRMPSK 421



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 110/220 (50%), Gaps = 7/220 (3%)

Query: 24  YSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAY 83
           ++   +L S I+A   A      G Q+H   +K   D+   + +SL+ MYAK  + E A 
Sbjct: 153 FTFATVLTSCIRASGLA-----LGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAR 207

Query: 84  QLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIG 143
           ++F+ +P RD +S  +II  + Q G    +LEMF+ +   G        A +++  S + 
Sbjct: 208 EIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLA 267

Query: 144 ELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMI 203
            L+ G+Q H  V+          +  +L+D+YSKC +   A R+F+ M  R  +SW AM+
Sbjct: 268 LLDHGKQAHCHVLRR-ELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMPERTAISWNAML 326

Query: 204 SGCIDSQNYDTGIDLFRAMQREG-VKPTRVTLTIVLLACA 242
            G          ++LFR M+ E  VKP  VTL  VL  C+
Sbjct: 327 VGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCS 366


>gi|124360491|gb|ABN08501.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 575

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 180/561 (32%), Positives = 295/561 (52%), Gaps = 78/561 (13%)

Query: 55  LKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSL 114
           LKSG D D  + N ++ +YAK+   E A +LFDEMP R    WN +I+ +          
Sbjct: 54  LKSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGY---------- 103

Query: 115 EMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDL 174
                 + CG   +A  L  ++      G+ E+ R              +V   T ++  
Sbjct: 104 ------WKCGNEEEASTLFHVM------GDQEISR--------------NVITWTTMITG 137

Query: 175 YSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG-VKPTRVT 233
           ++K  +   A   F++M  R+ VSW AM+SG       +  I LF  M   G V+P   T
Sbjct: 138 HAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETT 197

Query: 234 LTIVLLACAELRDLRNGKAI-HGYAYCCGFDFDHHLSAALMHMYCECT--EALHP----- 285
              V+ +C+ L D    ++I        GF  ++ +  AL+ M+ +C   EA H      
Sbjct: 198 WATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQL 257

Query: 286 --------------------------ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
                                     A+ +F++   +D V W+S+I GY+Q+G+  +A+K
Sbjct: 258 GVYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIK 317

Query: 320 LFSRM--RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
           LF  M    +  +P+ VT++++ S+C     L  G      +    +   +S+ N+L+NM
Sbjct: 318 LFEEMISSEDSRKPDEVTMVSVFSACGHLGELGLGNWAVSILKVNHIQISISVYNSLINM 377

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           YS+CGS+  +  IF EMA RD VS+ TLISG+  HG+G E+++L  +M+E G+EPD IT 
Sbjct: 378 YSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLSKMKEDGIEPDRITY 437

Query: 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
           +AIL+AC+HAGL+ E + LF ++         ++HYAC +D+LG++G++E+A K++ +MP
Sbjct: 438 IAILTACSHAGLLDEGQRLFESIKFPD-----VDHYACMIDMLGRAGRLEEAMKLIQSMP 492

Query: 498 MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEE 557
           M+P   I  SL++A  IH ++E+ E+ A +L + EP N+ NY LLS + + +G W   ++
Sbjct: 493 MEPHAGIYGSLLNATSIHKQVELGELAAAKLFKVEPHNSGNYALLSNIYASAGRWKEGDK 552

Query: 558 VWRVMRAKGLSKSYGFSRIEN 578
           V   MR +G+ K+ G S +E+
Sbjct: 553 VRDTMRKQGVKKTTGLSWLEH 573



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 154/356 (43%), Gaps = 73/356 (20%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACA------------------------YAQTH 43
           E+T+ L+   L P  +  +     +VI +C+                        Y    
Sbjct: 176 EETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKT 235

Query: 44  QHFGLQLHCTALKSGSD----------ADPVISNSLISMYAKFSKPESAYQLFDEMPYRD 93
               +   C  L++                V  N++IS YA+     SA  LFD+MP RD
Sbjct: 236 ALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRD 295

Query: 94  TISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE--LLAGIISLCSQIGELELGRQI 151
           T+SWNS+I  +TQNG   +++++F EM       K +   +  + S C  +GEL LG   
Sbjct: 296 TVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLGELGLGNWA 355

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQN 211
            +++ V+   ++S+ V  +L+++YS+C     A+ +F++M  R+ VS+  +ISG  +  +
Sbjct: 356 VSILKVN-HIQISISVYNSLINMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGH 414

Query: 212 YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAA 271
               I+L   M+ +G++P R+T   +L AC+    L  G+                    
Sbjct: 415 GMESIELLSKMKEDGIEPDRITYIAILTACSHAGLLDEGQR------------------- 455

Query: 272 LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
                            +FE  K  DV  ++ +I    ++G L EAMKL   M +E
Sbjct: 456 -----------------LFESIKFPDVDHYACMIDMLGRAGRLEEAMKLIQSMPME 494



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 110/233 (47%), Gaps = 20/233 (8%)

Query: 304 IIRGYSQSGDLSEA-MKLFSRMRLE-RIEPNSVTLLAILSSCTRQS--FLSHGLGVHCYI 359
           +++ YSQ G  S+  + LF  M     I+PN+     ++ S   +S  FL+H       +
Sbjct: 1   MLKYYSQIGVHSQVFVSLFKHMLQHCDIKPNASFYSVMMKSAGSESMLFLAH-------V 53

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEAL 419
           +K+G + D  + N ++ +Y+K G I  + ++F+EM  R    W  +ISGY   G  EEA 
Sbjct: 54  LKSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEAS 113

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479
            LF  M +  +  + IT   +++     G +K A   F+  M E+ +      +   +  
Sbjct: 114 TLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDK-MPERSVV----SWNAMLSG 168

Query: 480 LGKSGKIEDACKVVSTM----PMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
             + G  E+  ++ + M     ++P     ++++S+C   G   ++E +  +L
Sbjct: 169 YAQGGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKL 221


>gi|125577145|gb|EAZ18367.1| hypothetical protein OsJ_33897 [Oryza sativa Japonica Group]
          Length = 730

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 164/495 (33%), Positives = 274/495 (55%), Gaps = 14/495 (2%)

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
            A +LFD MP R+ ++W +++  +T N      LE+F EM   G       L   ++ C 
Sbjct: 91  DARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACL 150

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
              +++LG+Q+H   I  G+  ++  +  +L  LY+K      ALR F ++  +N ++WT
Sbjct: 151 ASCDVDLGKQVHGYAIKYGAESITS-MGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWT 209

Query: 201 AMISGCI-DSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
            MIS C  D +  + G+ LF  M  +GV P   TLT V+  C    DL  GK +  +++ 
Sbjct: 210 TMISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFK 269

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS---- 315
            G + +  +  + M++Y    E     R+ FE+ +   ++ W+++I GY+Q  D +    
Sbjct: 270 IGCETNLPVKNSTMYLYLRKGETDEAMRL-FEQMEDASIITWNAMISGYAQIMDSAKDDL 328

Query: 316 -------EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
                  +A+ +F  ++   ++P+  T  +ILS C+    L  G  +H   +K+G   DV
Sbjct: 329 QARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDV 388

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
            + +AL+NMY+KCG I  +++ F EM  R FV+WT++ISGY  HG  +EA+QLF EM+ +
Sbjct: 389 VVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLA 448

Query: 429 GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIED 488
           GV P+ IT +++LSAC++AGLV+EAE  F+ + KE  I   ++HY C +D+  + G++ED
Sbjct: 449 GVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVED 508

Query: 489 ACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSE 548
           A   +     +P+  I SSLV+ CR HG +E+A   A +L+E +P+    Y LL  +   
Sbjct: 509 AFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELKPKGIETYILLLNMYIS 568

Query: 549 SGNWLGAEEVWRVMR 563
           +  W     V ++M+
Sbjct: 569 TERWQDVARVRKLMK 583



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 120/434 (27%), Positives = 213/434 (49%), Gaps = 24/434 (5%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           E+   G Y +   L + + AC  A      G Q+H  A+K G+++   + NSL S+YAK 
Sbjct: 129 EMLEMGRYPSHYTLGATLNAC-LASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKL 187

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVR-SLEMFREMYLCGFVLKAELLAGI 135
              +SA + F  +P ++ I+W ++I+   ++   V   + +F +M + G +     L  +
Sbjct: 188 GSLDSALRAFWRIPEKNVITWTTMISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSV 247

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           +SLC    +L LG+Q+ A     G  E ++ V  + + LY +      A+R+FEQM   +
Sbjct: 248 MSLCGTRLDLNLGKQVQAFSFKIGC-ETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDAS 306

Query: 196 EVSWTAMISG---CIDSQNYD--------TGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
            ++W AMISG    +DS   D          + +FR ++R  +KP   T + +L  C+ +
Sbjct: 307 IITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAM 366

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
             L  G+ IH      GF  D  +++AL++MY +C   +  A   F     +  V W+S+
Sbjct: 367 MALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCG-CIQDANKAFLEMPTRTFVTWTSM 425

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCY-IMKAG 363
           I GYSQ G   EA++LF  MRL  + PN +T +++LS+C+    +      H + +MK  
Sbjct: 426 ISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEE--AEHYFDMMKKE 483

Query: 364 LNFDVSIGN--ALMNMYSKCGSITSSHQIFNEMA-ARDFVSWTTLISGYGFHGYGEEAL- 419
              +  + +   +++M+ + G +  +           +   W++L++G   HG  E A  
Sbjct: 484 YCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFY 543

Query: 420 --QLFLEMQESGVE 431
                LE++  G+E
Sbjct: 544 AADKLLELKPKGIE 557



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 89/164 (54%), Gaps = 1/164 (0%)

Query: 282 ALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILS 341
           A   AR +F+    ++VV W++++ GY+ +   +  +++F  M      P+  TL A L+
Sbjct: 88  AARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLN 147

Query: 342 SCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS 401
           +C     +  G  VH Y +K G     S+GN+L ++Y+K GS+ S+ + F  +  ++ ++
Sbjct: 148 ACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVIT 207

Query: 402 WTTLISGYGFHGYGEE-ALQLFLEMQESGVEPDAITVLAILSAC 444
           WTT+IS         E  + LF++M   GV P+  T+ +++S C
Sbjct: 208 WTTMISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLC 251



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 112/232 (48%), Gaps = 5/232 (2%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           Q L +++ +L  S +  +     S++  C+     +  G Q+H   +KSG  +D V++++
Sbjct: 336 QALTIFR-DLKRSVMKPDLFTFSSILSVCSAMMALEQ-GEQIHAQTIKSGFLSDVVVNSA 393

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           L++MY K    + A + F EMP R  ++W S+I+ ++Q+G    ++++F EM L G    
Sbjct: 394 LVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPN 453

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
                 ++S CS  G +E       ++  +   E  V     ++D++ +      A    
Sbjct: 454 EITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFI 513

Query: 189 EQMVIR-NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLL 239
           ++     NE  W+++++GC    N +  +  + A +   +KP  +   I+LL
Sbjct: 514 KRTGFEPNEAIWSSLVAGCRSHGNME--LAFYAADKLLELKPKGIETYILLL 563


>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Vitis vinifera]
          Length = 676

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 178/531 (33%), Positives = 284/531 (53%), Gaps = 22/531 (4%)

Query: 53  TALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIIN-CFTQNGFYV 111
           T     S  D  +   +I+ YA+  + + A QLF EMP +D +SWNS+I  CF      +
Sbjct: 32  TVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSWNSMIKGCFDCADLTM 91

Query: 112 RSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTAL 171
            + ++F EM     V    ++ G +    Q G++E         + +G F    F   A 
Sbjct: 92  -ARKLFDEMPERSVVSWTTMINGFL----QFGKIE---------VAEGLFYKMPFRDIAA 137

Query: 172 LD--LYSKCHHWLI--ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV 227
            +  +Y  C +  +   LR+F++M  RN +SWT+MI G       +  + LFR M   GV
Sbjct: 138 WNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGV 197

Query: 228 --KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
             KPT  T   V+ ACA    L  G  IH + +  G+ FD ++SAAL+  Y  C +    
Sbjct: 198 EVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDS 257

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
            R+   +  + +VVIW++++ GY  +    +A+K+F  M  E + PN  +  + L+SC  
Sbjct: 258 LRVFHGKLHM-NVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCG 316

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
              L  G  +H   +K GL  DV +GN+L+ MY +CG++     IF  ++ ++ VSW ++
Sbjct: 317 LEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSV 376

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           I G   HG G  AL  F +M  S VEPD IT   +LSAC+H+G+ ++   LF    + K 
Sbjct: 377 IVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKS 436

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
             + ++HYAC VD+LG+SGK+E+A +++  MP+K ++ +   L+SAC +H +LEVAE  A
Sbjct: 437 AEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAERAA 496

Query: 526 HQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
             +I+ EP  ++ Y LLS + + +  W     + R M+ +G++K  G S I
Sbjct: 497 KCIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWI 547



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 110/451 (24%), Positives = 190/451 (42%), Gaps = 70/451 (15%)

Query: 8   EQTLHLYKQ------ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           E+ L L++Q      E+ P+     ++    VI ACA A    + G+Q+H    K G   
Sbjct: 183 EEALGLFRQMMGCGVEVKPT-----SSTYCCVITACANASA-LYQGVQIHAHVFKLGYSF 236

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D  IS +LI+ YA   + E + ++F    + + + W +++  +  N  +  +L++F EM 
Sbjct: 237 DAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMM 296

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
             G +         ++ C  +  L+ GR+IH   +  G  E  VFV  +L+ +Y +C + 
Sbjct: 297 REGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLG-LETDVFVGNSLIVMYYRCGNL 355

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
              + +F+++  +N VSW ++I GC         +  F  M R  V+P  +T T +L AC
Sbjct: 356 NDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSAC 415

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           +     + G+ +  Y     F  +      L H  C                 + D++  
Sbjct: 416 SHSGMSQKGRCLFKY-----FSENKSAEVKLDHYAC-----------------MVDIL-- 451

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
                   +SG L EA +L   M    ++ NS+  L +LS+CT  S L     V     K
Sbjct: 452 -------GRSGKLEEAEELIRNM---PVKANSMVWLVLLSACTMHSKLE----VAERAAK 497

Query: 362 AGLNFDVSIGNA---LMNMYSKCGSITSSHQIFNEMAARDFV-----SWTTL-------I 406
             ++ +    +A   L N+Y+     +   +I  EM  R        SW T+       +
Sbjct: 498 CIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWITIKGWRNEFL 557

Query: 407 SGYGFHGYGEEALQ----LFLEMQESGVEPD 433
           SG   H   +   Q    L  +++E G  PD
Sbjct: 558 SGDRSHPSSDRIYQKLEWLGGKLKELGYVPD 588



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 67/317 (21%), Positives = 144/317 (45%), Gaps = 46/317 (14%)

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
           Y   C F +   ++  L +      + +  AR +F++    DV +++ +I GY+++    
Sbjct: 6   YTKFCTFSYQSMITDHLRN------QRIDEARTVFDKVSFPDVYLYTMMITGYARNYRFD 59

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSC----------------TRQSFLSHGLGVHCYI 359
            A++LF  M ++ +    V+  +++  C                  +S +S    ++ ++
Sbjct: 60  HALQLFYEMPVKDV----VSWNSMIKGCFDCADLTMARKLFDEMPERSVVSWTTMINGFL 115

Query: 360 ------MKAGLNF-----DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
                 +  GL +     D++  N+++  Y   G +    ++F EM  R+ +SWT++I G
Sbjct: 116 QFGKIEVAEGLFYKMPFRDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGG 175

Query: 409 YGFHGYGEEALQLFLEMQESGVE--PDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
              HG  EEAL LF +M   GVE  P + T   +++AC +A  + +   +  +V    K+
Sbjct: 176 LDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVF---KL 232

Query: 467 ALAIEHY--ACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA-EM 523
             + + Y  A  +       ++ED+ +V     +  +  I ++LV+   ++ + E A ++
Sbjct: 233 GYSFDAYISAALITFYANCKQMEDSLRVFHG-KLHMNVVIWTALVTGYGLNCKHEDALKV 291

Query: 524 LAHQLIEAEPENAANYT 540
               + E    N +++T
Sbjct: 292 FGEMMREGVLPNQSSFT 308


>gi|125555089|gb|EAZ00695.1| hypothetical protein OsI_22717 [Oryza sativa Indica Group]
          Length = 992

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 175/566 (30%), Positives = 304/566 (53%), Gaps = 8/566 (1%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           + +   G+  +   + SVI  C + +   H G  +H  A++S  + +  + N+L++MYA 
Sbjct: 434 RRMQIEGVDPDALTVISVISKCRHTE-DLHVGKSIHAYAVRSRLELNESVMNALLAMYAD 492

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
             +     +LF  M  R  ISWN+II+ F +NG  V  L  F +M L         L  +
Sbjct: 493 CGQLSICCKLFHTMEVRTLISWNTIISGFAENGDSVACLRFFCQMRLADMQFDLVTLIAL 552

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           IS  S I ++ +G  +H+L I  G   L V V+ AL+ +Y+ C       ++F+ +   N
Sbjct: 553 ISSLSAIEDITVGESVHSLAIRSGC-NLDVSVANALITMYTNCGIIQAGEKLFDSLSSVN 611

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC-AELRDLRNGKAIH 254
            +S+ A+++G   +  +   + LF  M +   KP  +TL  +L  C ++L+    GK +H
Sbjct: 612 TISYNALMTGYRKNNLFKEILPLFYHMIKNDQKPNIITLLNLLPICHSQLQ----GKTVH 667

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
            YA       +  L  + + MY      L     +F     ++ ++W++I+    Q    
Sbjct: 668 SYAIRNFSKLETSLFTSAICMYSRFNN-LEYCHNLFCLVGERNNIVWNAILSACVQCKQA 726

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
             A   F +++   ++ ++VT+LA++S+C++         V    ++ G +  + + NAL
Sbjct: 727 GVAFDYFRQIQFLNVKTDAVTMLALISACSQLGKADLAECVTAIALQKGFDGTIVVLNAL 786

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           ++M+S+CGSI+ + +IF+    +D VSW+T+I+ Y  HG G  AL LFL M  +G++PD 
Sbjct: 787 IDMHSRCGSISFARKIFDISMEKDSVSWSTMINAYSMHGDGGSALDLFLMMVSTGIKPDD 846

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS 494
           IT +++LSAC+ +G +++  TLF +++ +  I   +EHYAC VDLLG++G +++A  +V+
Sbjct: 847 ITFVSVLSACSRSGFLEQGRTLFRSMLADHGITPRMEHYACMVDLLGRTGHLDEAYDIVT 906

Query: 495 TMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLG 554
           TMP +PS  +L SL+ ACR HG  ++ E +   L E++  N  +Y +LS + + +G W  
Sbjct: 907 TMPFRPSKSLLESLLGACRFHGNSKLGESVGKILTESDHGNPRSYVMLSNIYASAGKWSD 966

Query: 555 AEEVWRVMRAKGLSKSYGFSRIENEY 580
            E +   M AKGL K  G S I   Y
Sbjct: 967 YERLRSDMEAKGLIKDVGVSLIGGTY 992



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 126/438 (28%), Positives = 239/438 (54%), Gaps = 6/438 (1%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           F+ + L LY++        S+    P VI+ACA A +    G ++HC  +++G   +  +
Sbjct: 124 FHRELLGLYRE---VCAFGSDNFTFPPVIRACA-AVSCLRLGKEVHCRVVRTGHGGNVGV 179

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
             +L+ MYAK  + + + ++FD M  RD ISWN++I+ ++ NG  + + E  ++M   GF
Sbjct: 180 QTALLDMYAKSGQVDLSRRVFDGMKSRDLISWNAMISGYSLNGCLLEAAEALKQMQQDGF 239

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
              A  L GI+S+ S +G  + G  +HA  +  G       V+ A + +Y+   H   +L
Sbjct: 240 RPNASSLVGIVSMVSGLGVRDAGDPLHAFALKSGVLG-DESVTPAFISMYAAFGHLSSSL 298

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
            +F Q ++ N VS  +MIS C+    ++    +FR M+ +G+ P  VT+  +L  C+   
Sbjct: 299 SLFHQSLVDNLVSCNSMISVCMQHGAWEKAFGVFRLMRCKGLVPNLVTVVSILPCCSNFF 358

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
            + +G+++HG     G      + +AL+ MY +  + L  A  +F     K  ++W+S+I
Sbjct: 359 GINHGESVHGMVIKFGLAEQVSVVSALVSMYSKLGD-LDSAVFLFSSVTEKSQLLWNSLI 417

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
            GY  +   +  M    RM++E ++P+++T+++++S C     L  G  +H Y +++ L 
Sbjct: 418 SGYLVNNKWNMVMGSVRRMQIEGVDPDALTVISVISKCRHTEDLHVGKSIHAYAVRSRLE 477

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            + S+ NAL+ MY+ CG ++   ++F+ M  R  +SW T+ISG+  +G     L+ F +M
Sbjct: 478 LNESVMNALLAMYADCGQLSICCKLFHTMEVRTLISWNTIISGFAENGDSVACLRFFCQM 537

Query: 426 QESGVEPDAITVLAILSA 443
           + + ++ D +T++A++S+
Sbjct: 538 RLADMQFDLVTLIALISS 555



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 124/441 (28%), Positives = 220/441 (49%), Gaps = 9/441 (2%)

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYR---DTISWNSIINCFTQNGFYVRSLEMFR 118
           D  +    +  Y  F KP SA  +F    YR   +    N  + CF+ +GF+   L ++R
Sbjct: 75  DASVVAGAVERYLFFGKPASAAAVFAGF-YRGRAEVYDLNIAVRCFSDHGFHRELLGLYR 133

Query: 119 EMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKC 178
           E  +C F         +I  C+ +  L LG+++H  V+  G    +V V TALLD+Y+K 
Sbjct: 134 E--VCAFGSDNFTFPPVIRACAAVSCLRLGKEVHCRVVRTGHGG-NVGVQTALLDMYAKS 190

Query: 179 HHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVL 238
               ++ RVF+ M  R+ +SW AMISG   +       +  + MQ++G +P   +L  ++
Sbjct: 191 GQVDLSRRVFDGMKSRDLISWNAMISGYSLNGCLLEAAEALKQMQQDGFRPNASSLVGIV 250

Query: 239 LACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDV 298
              + L     G  +H +A   G   D  ++ A + MY      L  +  +F ++ V ++
Sbjct: 251 SMVSGLGVRDAGDPLHAFALKSGVLGDESVTPAFISMYAAFGH-LSSSLSLFHQSLVDNL 309

Query: 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCY 358
           V  +S+I    Q G   +A  +F  MR + + PN VT+++IL  C+    ++HG  VH  
Sbjct: 310 VSCNSMISVCMQHGAWEKAFGVFRLMRCKGLVPNLVTVVSILPCCSNFFGINHGESVHGM 369

Query: 359 IMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEA 418
           ++K GL   VS+ +AL++MYSK G + S+  +F+ +  +  + W +LISGY  +      
Sbjct: 370 VIKFGLAEQVSVVSALVSMYSKLGDLDSAVFLFSSVTEKSQLLWNSLISGYLVNNKWNMV 429

Query: 419 LQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVD 478
           +     MQ  GV+PDA+TV++++S C H   +   +++    ++  ++ L        + 
Sbjct: 430 MGSVRRMQIEGVDPDALTVISVISKCRHTEDLHVGKSIHAYAVRS-RLELNESVMNALLA 488

Query: 479 LLGKSGKIEDACKVVSTMPMK 499
           +    G++   CK+  TM ++
Sbjct: 489 MYADCGQLSICCKLFHTMEVR 509


>gi|302805550|ref|XP_002984526.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
 gi|300147914|gb|EFJ14576.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
          Length = 792

 Score =  295 bits (754), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 181/575 (31%), Positives = 301/575 (52%), Gaps = 11/575 (1%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           F ++ L LY Q++   G+  ++    S + AC    T    G  +H   + S  ++D  +
Sbjct: 227 FCDEALDLY-QQMDADGIQPDSITFTSALLAC----TKLVDGKAIHARIVSSNMESD-FV 280

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
            ++LI+MYA+     SA Q F+++  +  + W S++  + Q   Y  +L+++  M   G 
Sbjct: 281 GSALINMYARCGDVSSARQAFEKIQNKHVVCWTSLMTAYVQTCHYREALDLYGRMDHEGV 340

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
                     +  C+ +G L+ G+ IH+ V   G F+ S+ V TALL +Y+KC     A 
Sbjct: 341 HADGVTYVTALGACASLGALKEGKAIHSRVFECG-FQ-SLVVHTALLTMYAKCGELDAAR 398

Query: 186 RVFEQM-VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
            VF ++   RN   WTAMIS    + +    ++L+  M  EG +P   T + VL AC+  
Sbjct: 399 AVFNRVRQKRNVYCWTAMISAYAQAGHTQEALELYDQMVAEGTRPNEYTFSNVLAACSSS 458

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
            DL  G  IHG+        +  +  AL+ MY +C  +L  A+  FE +  KD+V W+++
Sbjct: 459 GDLEAGMKIHGHVENSELASNVAVQNALVTMYAKCG-SLELAKSAFEASGRKDLVSWNAM 517

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK-AG 363
           I  Y+Q G   EA+ L+  M  + + P+ VT+ + LS+C     L  G  +H  ++K   
Sbjct: 518 IGAYAQHGLGREALDLYQTMTSQGVLPDEVTIASSLSACAISGSLQLGREIHSRVLKNQS 577

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
               + +  AL+NMY +CG + ++  +F +M  RD +SWT + S Y   G+ ++ L L+L
Sbjct: 578 FRSSLMVQTALVNMYGRCGRLETARSMFEDMGQRDVLSWTAMTSAYAQQGHADQVLDLYL 637

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS 483
           EM   G+ P+ IT  +IL  C+HAGL+      F  +  E ++    EH+ C VDLLG+S
Sbjct: 638 EMVLHGIRPNEITFTSILVGCSHAGLLARGVECFLEMQSEHEVVPIREHFLCMVDLLGRS 697

Query: 484 GKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLS 543
           G++ DA  +V +MP +P +    +++ +C+ H   + A+  A ++ E +PEN + Y+LLS
Sbjct: 698 GRLRDAEALVESMPYQPDSVAWLTVLGSCKTHSDADTAKRAARRVKELDPENTSLYSLLS 757

Query: 544 MVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIEN 578
            + + +G    A EV   M+  GL K  G S IE 
Sbjct: 758 SIFTAAGLPQEALEVQLSMKEMGLKKPPGQSLIEK 792



 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 129/446 (28%), Positives = 228/446 (51%), Gaps = 14/446 (3%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSK---PESAYQLFDEMPYRDTISWNSIINC 103
           G  +H   L++G   +  + N LI MY    +     +A+Q F  +  +    +N +++ 
Sbjct: 61  GKLVHRHLLRTGHGRNQFLGNLLIQMYGNCGEIHLARAAFQNFASI--KAVACYNQMLSA 118

Query: 104 FTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVI-VDGSFE 162
           + +NG + R+LE++  M   G          ++  CS +G L   R+IHA +I       
Sbjct: 119 YGKNGLWNRALELYHRMCEEGPEPDKITYFIVLGSCSAVGSLREAREIHASIIEAPQIIR 178

Query: 163 LSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM 222
            ++ +  AL+++Y KC     A +VF+ +  R+ VSWT+MIS   ++   D  +DL++ M
Sbjct: 179 DNLSLQNALVNMYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANNGFCDEALDLYQQM 238

Query: 223 QREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEA 282
             +G++P  +T T  LLAC +L D   GKAIH        + D  + +AL++MY  C + 
Sbjct: 239 DADGIQPDSITFTSALLACTKLVD---GKAIHARIVSSNMESD-FVGSALINMYARCGD- 293

Query: 283 LHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSS 342
           +  AR  FE+ + K VV W+S++  Y Q+    EA+ L+ RM  E +  + VT +  L +
Sbjct: 294 VSSARQAFEKIQNKHVVCWTSLMTAYVQTCHYREALDLYGRMDHEGVHADGVTYVTALGA 353

Query: 343 CTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEM-AARDFVS 401
           C     L  G  +H  + + G    + +  AL+ MY+KCG + ++  +FN +   R+   
Sbjct: 354 CASLGALKEGKAIHSRVFECGFQ-SLVVHTALLTMYAKCGELDAARAVFNRVRQKRNVYC 412

Query: 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVM 461
           WT +IS Y   G+ +EAL+L+ +M   G  P+  T   +L+AC+ +G ++    +  +V 
Sbjct: 413 WTAMISAYAQAGHTQEALELYDQMVAEGTRPNEYTFSNVLAACSSSGDLEAGMKIHGHV- 471

Query: 462 KEKKIALAIEHYACYVDLLGKSGKIE 487
           +  ++A  +      V +  K G +E
Sbjct: 472 ENSELASNVAVQNALVTMYAKCGSLE 497



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 155/304 (50%), Gaps = 16/304 (5%)

Query: 237 VLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFER-TKV 295
           +L  C  L  L  GK +H +    G   +  L   L+ MY  C E +H AR  F+    +
Sbjct: 48  LLQQCGRLGSLAEGKLVHRHLLRTGHGRNQFLGNLLIQMYGNCGE-IHLARAAFQNFASI 106

Query: 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV 355
           K V  ++ ++  Y ++G  + A++L+ RM  E  EP+ +T   +L SC+    L     +
Sbjct: 107 KAVACYNQMLSAYGKNGLWNRALELYHRMCEEGPEPDKITYFIVLGSCSAVGSLREAREI 166

Query: 356 HCYIMKAG--LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHG 413
           H  I++A   +  ++S+ NAL+NMY KCGS+  + ++F+ +  RD VSWT++IS Y  +G
Sbjct: 167 HASIIEAPQIIRDNLSLQNALVNMYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANNG 226

Query: 414 YGEEALQLFLEMQESGVEPDAITVLAILSACNH--AGLVKEAETLFNNVMKEKKIALAIE 471
           + +EAL L+ +M   G++PD+IT  + L AC     G    A  + +N M+   +  A+ 
Sbjct: 227 FCDEALDLYQQMDADGIQPDSITFTSALLACTKLVDGKAIHARIVSSN-MESDFVGSAL- 284

Query: 472 HYACYVDLLGKSGKIEDACKVVSTMPMKPS---TRILSSLVSACRIHGRLEVAEMLAHQL 528
                +++  + G +  A +    +  K     T ++++ V  C     L++   + H+ 
Sbjct: 285 -----INMYARCGDVSSARQAFEKIQNKHVVCWTSLMTAYVQTCHYREALDLYGRMDHEG 339

Query: 529 IEAE 532
           + A+
Sbjct: 340 VHAD 343


>gi|357507465|ref|XP_003624021.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499036|gb|AES80239.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 632

 Score =  295 bits (754), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 180/561 (32%), Positives = 295/561 (52%), Gaps = 78/561 (13%)

Query: 55  LKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSL 114
           LKSG D D  + N ++ +YAK+   E A +LFDEMP R    WN +I+ +          
Sbjct: 111 LKSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGY---------- 160

Query: 115 EMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDL 174
                 + CG   +A  L  ++      G+ E+ R              +V   T ++  
Sbjct: 161 ------WKCGNEEEASTLFHVM------GDQEISR--------------NVITWTTMITG 194

Query: 175 YSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG-VKPTRVT 233
           ++K  +   A   F++M  R+ VSW AM+SG       +  I LF  M   G V+P   T
Sbjct: 195 HAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETT 254

Query: 234 LTIVLLACAELRDLRNGKAI-HGYAYCCGFDFDHHLSAALMHMYCECT--EALHP----- 285
              V+ +C+ L D    ++I        GF  ++ +  AL+ M+ +C   EA H      
Sbjct: 255 WATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQL 314

Query: 286 --------------------------ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
                                     A+ +F++   +D V W+S+I GY+Q+G+  +A+K
Sbjct: 315 GVYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIK 374

Query: 320 LFSRM--RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
           LF  M    +  +P+ VT++++ S+C     L  G      +    +   +S+ N+L+NM
Sbjct: 375 LFEEMISSEDSRKPDEVTMVSVFSACGHLGELGLGNWAVSILKVNHIQISISVYNSLINM 434

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           YS+CGS+  +  IF EMA RD VS+ TLISG+  HG+G E+++L  +M+E G+EPD IT 
Sbjct: 435 YSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLSKMKEDGIEPDRITY 494

Query: 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
           +AIL+AC+HAGL+ E + LF ++         ++HYAC +D+LG++G++E+A K++ +MP
Sbjct: 495 IAILTACSHAGLLDEGQRLFESIKFPD-----VDHYACMIDMLGRAGRLEEAMKLIQSMP 549

Query: 498 MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEE 557
           M+P   I  SL++A  IH ++E+ E+ A +L + EP N+ NY LLS + + +G W   ++
Sbjct: 550 MEPHAGIYGSLLNATSIHKQVELGELAAAKLFKVEPHNSGNYALLSNIYASAGRWKEGDK 609

Query: 558 VWRVMRAKGLSKSYGFSRIEN 578
           V   MR +G+ K+ G S +E+
Sbjct: 610 VRDTMRKQGVKKTTGLSWLEH 630



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 154/356 (43%), Gaps = 73/356 (20%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACA------------------------YAQTH 43
           E+T+ L+   L P  +  +     +VI +C+                        Y    
Sbjct: 233 EETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKT 292

Query: 44  QHFGLQLHCTALKSGSD----------ADPVISNSLISMYAKFSKPESAYQLFDEMPYRD 93
               +   C  L++                V  N++IS YA+     SA  LFD+MP RD
Sbjct: 293 ALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRD 352

Query: 94  TISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE--LLAGIISLCSQIGELELGRQI 151
           T+SWNS+I  +TQNG   +++++F EM       K +   +  + S C  +GEL LG   
Sbjct: 353 TVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLGELGLGNWA 412

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQN 211
            +++ V+   ++S+ V  +L+++YS+C     A+ +F++M  R+ VS+  +ISG  +  +
Sbjct: 413 VSILKVN-HIQISISVYNSLINMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGH 471

Query: 212 YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAA 271
               I+L   M+ +G++P R+T   +L AC+    L  G+                    
Sbjct: 472 GMESIELLSKMKEDGIEPDRITYIAILTACSHAGLLDEGQR------------------- 512

Query: 272 LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
                            +FE  K  DV  ++ +I    ++G L EAMKL   M +E
Sbjct: 513 -----------------LFESIKFPDVDHYACMIDMLGRAGRLEEAMKLIQSMPME 551



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 129/274 (47%), Gaps = 23/274 (8%)

Query: 266 HHLSAALMHMYCECTEALHPARI---IFERTKVKDVVIWSSIIRGYSQSGDLSEA-MKLF 321
           HH +  ++ +  +CT  L P+     IF      DV +++ +++ YSQ G  S+  + LF
Sbjct: 17  HHQNHWVVLLLTQCTRFLAPSSYTCHIFHAATHPDVRVFTFMLKYYSQIGVHSQVFVSLF 76

Query: 322 SRMRLE-RIEPNSVTLLAILSSCTRQS--FLSHGLGVHCYIMKAGLNFDVSIGNALMNMY 378
             M     I+PN+     ++ S   +S  FL+H       ++K+G + D  + N ++ +Y
Sbjct: 77  KHMLQHCDIKPNASFYSVMMKSAGSESMLFLAH-------VLKSGYDRDHYVRNGILGIY 129

Query: 379 SKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
           +K G I  + ++F+EM  R    W  +ISGY   G  EEA  LF  M +  +  + IT  
Sbjct: 130 AKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVMGDQEISRNVITWT 189

Query: 439 AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-- 496
            +++     G +K A   F+  M E+ +      +   +    + G  E+  ++ + M  
Sbjct: 190 TMITGHAKKGNLKTARMYFDK-MPERSVV----SWNAMLSGYAQGGAPEETIRLFNDMLS 244

Query: 497 --PMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
              ++P     ++++S+C   G   ++E +  +L
Sbjct: 245 PGNVQPDETTWATVISSCSSLGDPCLSESIVRKL 278


>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
 gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  295 bits (754), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 153/436 (35%), Positives = 261/436 (59%), Gaps = 4/436 (0%)

Query: 144 ELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMI 203
            L L  Q+HA +IV G +  S  + T LL+L           ++F  +   +   +T++I
Sbjct: 24  RLYLLHQVHAHIIVSG-YGRSRSLLTKLLNLACAAGSISYTRQIFLAVPNPDSFLFTSLI 82

Query: 204 SGCIDSQNYDT-GIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGF 262
                S N+    +  +  M    V P+  T T V+ +CA+L  L++G+ +HG+    GF
Sbjct: 83  KSTSKSHNFSIYSLYFYSRMVLSNVSPSNYTFTSVIKSCADLSALKHGRVVHGHVLVHGF 142

Query: 263 DFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFS 322
             D ++ AAL+ +Y +C + ++ AR +F++ + + +V W+S+I GY Q+G   EA+ LF 
Sbjct: 143 GLDVYVQAALVALYGKCGDLIN-ARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFD 201

Query: 323 RMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCG 382
           RM+   +EP+S T +++LS+C      S G  VH YI+  GL+ +V +G +L+NMY +CG
Sbjct: 202 RMKETGVEPDSATFVSVLSACAHLGAFSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRCG 261

Query: 383 SITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILS 442
           +++ + ++F+ M  R+ V+WT +ISGYG +GYG +A++LF EM+ +G+ P++IT +A+LS
Sbjct: 262 NVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLFPNSITFVAVLS 321

Query: 443 ACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS-TMPMKPS 501
           AC HAGLV E   LF ++ +E  +   +EH  C VD+LG++G +++A   +   +P  P+
Sbjct: 322 ACAHAGLVNEGRRLFASIREEYHLVPGVEHNVCLVDMLGRAGLLDEAYNFIKEEIPENPA 381

Query: 502 TRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRV 561
             IL++++ AC++H   ++   +A  L+ AEPEN A+Y +LS + + +G     E V   
Sbjct: 382 PAILTAMLGACKMHKNFDLGAQVAEHLLAAEPENPAHYVILSNIYALAGRMDQVEIVRNN 441

Query: 562 MRAKGLSKSYGFSRIE 577
           M  K L K  G+S +E
Sbjct: 442 MIRKCLKKQVGYSTVE 457



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 79/275 (28%), Positives = 139/275 (50%), Gaps = 8/275 (2%)

Query: 3   SKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDAD 62
           S +F   +L+ Y + +  S +  +     SVIK+CA     +H G  +H   L  G   D
Sbjct: 88  SHNFSIYSLYFYSRMV-LSNVSPSNYTFTSVIKSCADLSALKH-GRVVHGHVLVHGFGLD 145

Query: 63  PVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL 122
             +  +L+++Y K     +A ++FD++  R  ++WNS+I+ + QNGF   ++ +F  M  
Sbjct: 146 VYVQAALVALYGKCGDLINARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFDRMKE 205

Query: 123 CGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL 182
            G    +     ++S C+ +G   LG  +H  ++ +G  +L+V + T+L+++Y +C +  
Sbjct: 206 TGVEPDSATFVSVLSACAHLGAFSLGCWVHEYIVGNG-LDLNVVLGTSLINMYIRCGNVS 264

Query: 183 IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
            A  VF+ M  RN V+WTAMISG   +      ++LF  M+R G+ P  +T   VL ACA
Sbjct: 265 KAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLFPNSITFVAVLSACA 324

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYC 277
               +  G+ +           ++HL   + H  C
Sbjct: 325 HAGLVNEGRRLFA-----SIREEYHLVPGVEHNVC 354



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 103/212 (48%), Gaps = 4/212 (1%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           F ++ + L+ + +  +G+  ++A   SV+ ACA+       G  +H   + +G D + V+
Sbjct: 192 FAKEAIGLFDR-MKETGVEPDSATFVSVLSACAHLGAFS-LGCWVHEYIVGNGLDLNVVL 249

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
             SLI+MY +      A ++FD M  R+ ++W ++I+ +  NG+  +++E+F EM   G 
Sbjct: 250 GTSLINMYIRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGL 309

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
              +     ++S C+  G +  GR++ A +  +      V  +  L+D+  +      A 
Sbjct: 310 FPNSITFVAVLSACAHAGLVNEGRRLFASIREEYHLVPGVEHNVCLVDMLGRAGLLDEAY 369

Query: 186 RVFEQMVIRNEVS--WTAMISGCIDSQNYDTG 215
              ++ +  N      TAM+  C   +N+D G
Sbjct: 370 NFIKEEIPENPAPAILTAMLGACKMHKNFDLG 401


>gi|225441775|ref|XP_002277828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Vitis vinifera]
          Length = 773

 Score =  295 bits (754), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 177/531 (33%), Positives = 290/531 (54%), Gaps = 3/531 (0%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G Q+H   +K G D D  +  SLISMY++     +A +++  + Y+D    N +I+ + +
Sbjct: 198 GEQIHGFVIKRGFDEDVFVGTSLISMYSRCGDLGAAEKVYSNLAYKDVRCLNFMISEYGK 257

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
            G   +++ +F  +   G          +IS C+   ++E+ R +H + I  G  +  + 
Sbjct: 258 AGCGEKAIGVFLHLLGSGLEPNDYTFTNVISACNGDIDVEVLRVLHGMCIKCGCGD-EIS 316

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           V  A++ +Y K      A + F  M  RN VSWTA++SG + + N    ++ F  +   G
Sbjct: 317 VGNAIVSVYVKHGMLEEAEKSFCGMGERNLVSWTALLSGYVKNGNGKKALEGFSQILELG 376

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           V         +L  C+E ++L  G  IHG+    G+  D  +  AL+ +Y +C + L  A
Sbjct: 377 VGFDSCCFATLLDGCSECKNLGLGLQIHGFVVKLGYVHDVSVGTALIDLYAKCRK-LRSA 435

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
           R++F     K++V +++I+ GY  + D  +AM LFS++RL  I+P+SVT   +LS    Q
Sbjct: 436 RLVFHSLLDKNIVSFNAILSGYIGA-DEEDAMALFSQLRLADIKPDSVTFARLLSLSADQ 494

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
           + L  G  +H YI+K G   + S+GNA++ MY+KCGSI  + Q+F  M   D +SW  +I
Sbjct: 495 ACLVKGKCLHAYIIKTGFEANPSVGNAVITMYAKCGSIGDACQLFYSMNYLDSISWNAVI 554

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
           S Y  HG G +AL LF EM++    PD IT+L++L AC+++GL++E   LFN++  +  I
Sbjct: 555 SAYALHGQGRKALILFEEMKKEEFVPDEITILSVLQACSYSGLLEEGFCLFNDMESKYGI 614

Query: 467 ALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAH 526
              IEH+AC VDLLG++G + +A   ++  P   S  +  +LV  C++HG L   ++ + 
Sbjct: 615 KPEIEHFACMVDLLGRAGYLSEAMSFINRSPFSGSPLLWRTLVHVCKLHGDLNFGQIASK 674

Query: 527 QLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            L++  PE A +Y L+S + +  G    A  V  VM    +SK  G S IE
Sbjct: 675 HLLDLAPEEAGSYILVSNLYAGGGMLNEAARVRTVMNDLKVSKEAGSSWIE 725



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 143/510 (28%), Positives = 257/510 (50%), Gaps = 14/510 (2%)

Query: 46  FGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT 105
            G  +H    K G   D    N+L+++Y KF+K   A  +FDEM  R+TI+W ++I    
Sbjct: 96  LGQAIHAFLAKLGYQNDAFRGNNLVNLYGKFNKLGDAQSVFDEMLVRNTITWTTLIKGHL 155

Query: 106 QNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSV 165
           Q         + REMY  G        + I+  C  +  L  G QIH  VI  G F+  V
Sbjct: 156 QVNDVESVFRIAREMYWVGEEFNEHTCSVILQACDSLENLVRGEQIHGFVIKRG-FDEDV 214

Query: 166 FVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
           FV T+L+ +YS+C     A +V+  +  ++      MIS    +   +  I +F  +   
Sbjct: 215 FVGTSLISMYSRCGDLGAAEKVYSNLAYKDVRCLNFMISEYGKAGCGEKAIGVFLHLLGS 274

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
           G++P   T T V+ AC    D+   + +HG    CG   +  +  A++ +Y +    L  
Sbjct: 275 GLEPNDYTFTNVISACNGDIDVEVLRVLHGMCIKCGCGDEISVGNAIVSVYVK-HGMLEE 333

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           A   F     +++V W++++ GY ++G+  +A++ FS++    +  +S     +L  C+ 
Sbjct: 334 AEKSFCGMGERNLVSWTALLSGYVKNGNGKKALEGFSQILELGVGFDSCCFATLLDGCSE 393

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
              L  GL +H +++K G   DVS+G AL+++Y+KC  + S+  +F+ +  ++ VS+  +
Sbjct: 394 CKNLGLGLQIHGFVVKLGYVHDVSVGTALIDLYAKCRKLRSARLVFHSLLDKNIVSFNAI 453

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILS-ACNHAGLVKEAETLFNNVMKEK 464
           +SGY      E+A+ LF +++ + ++PD++T   +LS + + A LVK  + L   ++K  
Sbjct: 454 LSGY-IGADEEDAMALFSQLRLADIKPDSVTFARLLSLSADQACLVK-GKCLHAYIIKTG 511

Query: 465 KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEML 524
             A      A  + +  K G I DAC++  +M    S    ++++SA  +HG+   A +L
Sbjct: 512 FEANPSVGNAV-ITMYAKCGSIGDACQLFYSMNYLDSIS-WNAVISAYALHGQGRKALIL 569

Query: 525 AHQLIEAE--PENAANYTLLSMV--CSESG 550
             ++ + E  P+     T+LS++  CS SG
Sbjct: 570 FEEMKKEEFVPD---EITILSVLQACSYSG 596



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 161/303 (53%), Gaps = 2/303 (0%)

Query: 143 GELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAM 202
           G+L LG+ IHA +   G ++   F    L++LY K +    A  VF++M++RN ++WT +
Sbjct: 92  GDLMLGQAIHAFLAKLG-YQNDAFRGNNLVNLYGKFNKLGDAQSVFDEMLVRNTITWTTL 150

Query: 203 ISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGF 262
           I G +   + ++   + R M   G +    T +++L AC  L +L  G+ IHG+    GF
Sbjct: 151 IKGHLQVNDVESVFRIAREMYWVGEEFNEHTCSVILQACDSLENLVRGEQIHGFVIKRGF 210

Query: 263 DFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFS 322
           D D  +  +L+ MY  C + L  A  ++     KDV   + +I  Y ++G   +A+ +F 
Sbjct: 211 DEDVFVGTSLISMYSRCGD-LGAAEKVYSNLAYKDVRCLNFMISEYGKAGCGEKAIGVFL 269

Query: 323 RMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCG 382
            +    +EPN  T   ++S+C     +     +H   +K G   ++S+GNA++++Y K G
Sbjct: 270 HLLGSGLEPNDYTFTNVISACNGDIDVEVLRVLHGMCIKCGCGDEISVGNAIVSVYVKHG 329

Query: 383 SITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILS 442
            +  + + F  M  R+ VSWT L+SGY  +G G++AL+ F ++ E GV  D+     +L 
Sbjct: 330 MLEEAEKSFCGMGERNLVSWTALLSGYVKNGNGKKALEGFSQILELGVGFDSCCFATLLD 389

Query: 443 ACN 445
            C+
Sbjct: 390 GCS 392


>gi|357129835|ref|XP_003566566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g05340-like [Brachypodium distachyon]
          Length = 614

 Score =  295 bits (754), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 183/565 (32%), Positives = 285/565 (50%), Gaps = 17/565 (3%)

Query: 28  AILPSVIKACAYAQTHQHFGLQLHCTALKSGS-----DADP------VISNSLISMYAKF 76
           A L  ++  C  A  H+  G  LH T +K+ S        P      V  N+L+SMYA+ 
Sbjct: 10  AYLSGLLSRCGRAADHR-LGAALHVTIVKNPSHFLLCPLRPSLRHVLVAWNALVSMYARC 68

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE--LLAG 134
            +   A ++FDEM  RD++SWNS+I          +   M R     G  +  +      
Sbjct: 69  GRHAEAARVFDEMRIRDSVSWNSLIGSSGAEDALSQFRRMLRSSSSPGGGVSCDHATFTT 128

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           ++S C++   L     +H LV+  G FE  V V  AL+  Y +C     A R F  M  R
Sbjct: 129 VLSACAREASLPTCAMVHGLVVSRG-FEAEVSVGNALVTAYFECESPGSAERAFHGMAER 187

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
           N ++WTAMISG    + Y   I LF+ M+R  V     T +  LLACA    L+ G+ IH
Sbjct: 188 NVITWTAMISGMAREELYKDSIVLFQQMRRT-VDANSATYSSSLLACAGSLALKEGQQIH 246

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
           G     G + D H+ + LM +Y +C   +     +F   +  D +  + I+ G++Q+G  
Sbjct: 247 GLVVKAGLETDLHVESGLMDLYSKCG-LMEDTLSVFRLCRQPDEISLTVILVGFAQNGLE 305

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
            +A +LF+ M  E I  ++  + A+L +    +  + G  +H  ++K     ++ + N L
Sbjct: 306 EKAFELFAEMAGEGILIDTNMVSAVLGAFGASAPFALGKQIHALVIKKCFGRNIYVCNGL 365

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
           +NMYSKCG +  S Q+FNE  +++ +SW ++I+ +  HG G E  +LF  M+  G  P  
Sbjct: 366 INMYSKCGELEESIQVFNETPSKNSISWNSIIAAFARHGQGSEVFKLFESMKADGANPTD 425

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS 494
           +T L++L  C+H G  K+   + N++  E  I   +EHYAC VD+LG++G +EDA   + 
Sbjct: 426 VTFLSLLHGCSHVGSAKKGLEILNSMSSEYGILPRVEHYACVVDMLGRAGLLEDARSFIE 485

Query: 495 TMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLG 554
             P K S  +  +L+ AC   G  E+ +  A +L+  +P++ A Y LLS + S  G W  
Sbjct: 486 DGPFKDSALLWQALMGACSFRGNSEIGKYAAEKLLHLDPDSPAAYVLLSNIYSSEGRWDD 545

Query: 555 AEEVWRVMRAKGLSKSYGFSRIENE 579
              V + MR  GL K  G S IE E
Sbjct: 546 RARVMKSMREMGLRKDTGKSWIELE 570


>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
 gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  294 bits (753), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 165/530 (31%), Positives = 273/530 (51%), Gaps = 2/530 (0%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G   H    ++  +    + NS++ MY K      A ++FDEM  R+ +SWN+II+ + +
Sbjct: 29  GRLFHEQMQRTVKNPPEFLENSVLKMYCKCGSLADARKVFDEMRERNLVSWNTIISAYAE 88

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           NG + +   MF  M             G +        LE+G+QIH+  I  G    +  
Sbjct: 89  NGVFDKGFCMFSNMLELETKPNGSTYIGFLRSLLNPSGLEIGKQIHSHAIRSG-LGSNAS 147

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           V+TA+ ++Y KC     A  VFE+M  +N V+WT ++ G   ++     + LF  M  EG
Sbjct: 148 VNTAISNMYVKCGWLEGAELVFEKMSEKNAVAWTGIMVGYTQAERQMDALALFAKMVNEG 207

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           V+      +IVL ACA L +L  G+ IHG+    G + +  +   L+  Y +C+  L  A
Sbjct: 208 VELDEYVFSIVLKACAGLEELNFGRQIHGHIVKLGLESEVSVGTPLVDFYVKCSN-LESA 266

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
              FE     + V WS++I GY Q G+  EA+K F  +R   ++ NS T  +I  +C+  
Sbjct: 267 TKAFEWISEPNDVSWSALITGYCQMGEFEEALKTFESLRTRSVDINSFTYTSIFQACSAL 326

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
           +  + G   H   +K+ L       +A++ MYS+CG +  + ++F  +   D V+WT +I
Sbjct: 327 ADFNSGAQAHADAIKSSLVAYQHGESAMITMYSRCGRLDYATRVFESIDDPDAVAWTAII 386

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
           +GY + G   EAL+LF  MQ+ GV P+A+T +A+L+AC+H+GLV E      ++     +
Sbjct: 387 AGYAYQGNAPEALKLFRRMQDCGVRPNAVTFIAVLTACSHSGLVIEGRQYLESMSSNYGV 446

Query: 467 ALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAH 526
           A  I+HY C VD+  ++G +++A +++ +MP  P       L+  C  +  LE+ E+ A 
Sbjct: 447 ATTIDHYDCMVDIYSRAGFLQEALELIRSMPFSPDAMSWKCLLGGCWTYRNLEIGELAAE 506

Query: 527 QLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
            L + +PE+ A Y L+  + +  G W  A  V ++M  + L K    S I
Sbjct: 507 NLFQLDPEDTAGYILMFNLYASFGKWKEAANVRKMMAERNLRKELSCSWI 556



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 113/420 (26%), Positives = 199/420 (47%), Gaps = 11/420 (2%)

Query: 135 IISLCSQIGELELGRQIHALV--IVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV 192
           +   C +I  L  GR  H  +   V    E   F+  ++L +Y KC     A +VF++M 
Sbjct: 16  LFEACGKIKSLFDGRLFHEQMQRTVKNPPE---FLENSVLKMYCKCGSLADARKVFDEMR 72

Query: 193 IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKA 252
            RN VSW  +IS   ++  +D G  +F  M     KP   T    L +      L  GK 
Sbjct: 73  ERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRSLLNPSGLEIGKQ 132

Query: 253 IHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSG 312
           IH +A   G   +  ++ A+ +MY +C   L  A ++FE+   K+ V W+ I+ GY+Q+ 
Sbjct: 133 IHSHAIRSGLGSNASVNTAISNMYVKCG-WLEGAELVFEKMSEKNAVAWTGIMVGYTQAE 191

Query: 313 DLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN 372
              +A+ LF++M  E +E +      +L +C     L+ G  +H +I+K GL  +VS+G 
Sbjct: 192 RQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVKLGLESEVSVGT 251

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
            L++ Y KC ++ S+ + F  ++  + VSW+ LI+GY   G  EEAL+ F  ++   V+ 
Sbjct: 252 PLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKTFESLRTRSVDI 311

Query: 433 DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKV 492
           ++ T  +I  AC+             + +K   +A      A  + +  + G+++ A +V
Sbjct: 312 NSFTYTSIFQACSALADFNSGAQAHADAIKSSLVAYQHGESA-MITMYSRCGRLDYATRV 370

Query: 493 VSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE--AEPENAANYTLLSMVCSESG 550
             ++   P     +++++     G    A  L  ++ +    P NA  +  +   CS SG
Sbjct: 371 FESID-DPDAVAWTAIIAGYAYQGNAPEALKLFRRMQDCGVRP-NAVTFIAVLTACSHSG 428



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 98/390 (25%), Positives = 169/390 (43%), Gaps = 44/390 (11%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G+  +  +   V+KACA  +   +FG Q+H   +K G +++  +   L+  Y K S  ES
Sbjct: 207 GVELDEYVFSIVLKACAGLE-ELNFGRQIHGHIVKLGLESEVSVGTPLVDFYVKCSNLES 265

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A + F+ +   + +SW+++I  + Q G +  +L+ F  +      + +     I   CS 
Sbjct: 266 ATKAFEWISEPNDVSWSALITGYCQMGEFEEALKTFESLRTRSVDINSFTYTSIFQACSA 325

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
           + +   G Q HA  I   S        +A++ +YS+C     A RVFE +   + V+WTA
Sbjct: 326 LADFNSGAQAHADAI-KSSLVAYQHGESAMITMYSRCGRLDYATRVFESIDDPDAVAWTA 384

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           +I+G     N    + LFR MQ  GV+P  VT   VL AC+      +G  I G  Y   
Sbjct: 385 IIAGYAYQGNAPEALKLFRRMQDCGVRPNAVTFIAVLTACS-----HSGLVIEGRQYLES 439

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
              ++ ++  + H  C                          ++  YS++G L EA++L 
Sbjct: 440 MSSNYGVATTIDHYDC--------------------------MVDIYSRAGFLQEALELI 473

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM-NMYSK 380
             M      P++++   +L  C     L  G      + +  L+ + + G  LM N+Y+ 
Sbjct: 474 RSMPF---SPDAMSWKCLLGGCWTYRNLEIGELAAENLFQ--LDPEDTAGYILMFNLYAS 528

Query: 381 CGSITSSHQIFNEMAARDF-----VSWTTL 405
            G    +  +   MA R+       SW T+
Sbjct: 529 FGKWKEAANVRKMMAERNLRKELSCSWITV 558


>gi|302788478|ref|XP_002976008.1| hypothetical protein SELMODRAFT_104228 [Selaginella moellendorffii]
 gi|300156284|gb|EFJ22913.1| hypothetical protein SELMODRAFT_104228 [Selaginella moellendorffii]
          Length = 495

 Score =  294 bits (753), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 155/486 (31%), Positives = 273/486 (56%), Gaps = 2/486 (0%)

Query: 65  ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG 124
           + NSL++MY K    E A + F+ M +R+ ISW++++  + Q G + ++L +F++M   G
Sbjct: 12  VGNSLLNMYGKCGGVEEAREFFESMTHRNVISWSTMVAAYAQRGDHDQALVLFQKMEEEG 71

Query: 125 FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
                     ++  C+    +E G  IH LV      ++ + V TAL+ +Y KC   + A
Sbjct: 72  VEPNEVTFLSVLDACANAEAVEQGEMIHRLV-ARKKLDVGLIVGTALVGMYGKCSRLIEA 130

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
            +VF+ +V ++ V+W+ MIS      +    I LF  M  +GV+P  + L  +L AC+  
Sbjct: 131 RQVFDGIVEKDVVTWSTMISAYAQLGHVREAIQLFGYMNLDGVRPNEIILMSILGACSSA 190

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
             L  GK  H     CGF  D      L+ MY +C + L  A+ +F   + +D++ WS++
Sbjct: 191 GALAEGKMTHELVVICGFGADVSTGNTLIKMYGKCGD-LASAKAVFGGMERRDLISWSAM 249

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
           +   ++ G   +A   F RM LE ++P+ VT +++L +C+    L  G  +H  I   G 
Sbjct: 250 LAVIAEHGHCKDAFVHFRRMDLEGVKPDYVTFVSLLDACSLLGALVEGHVIHTRIRAEGF 309

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
              + I N+L++MY KCGS+ ++ +IF+ M+ R+ ++WTT+I+    H  G+EAL+LF E
Sbjct: 310 QSVMYIENSLIDMYGKCGSLQAAREIFDRMSHRNVITWTTMITACVQHEQGKEALELFEE 369

Query: 425 MQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSG 484
           M+++GV+PD +  L+I+ +C+H+GLV+E    F  +++++     +EH+   +DLLG+SG
Sbjct: 370 MEKAGVQPDQVAFLSIIHSCSHSGLVEEGRIYFLKMVEDQSFTPGVEHFVGMLDLLGRSG 429

Query: 485 KIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSM 544
           K+ +A +++  MP++P     ++L+SAC+ H   E A  +A  ++   P +A  Y   S 
Sbjct: 430 KLNEAEELMEFMPVEPGVVGWNTLLSACKTHNDTERAGRVAGGMLVLGPGHAGPYVSFSN 489

Query: 545 VCSESG 550
           + S  G
Sbjct: 490 ILSGKG 495



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 124/388 (31%), Positives = 208/388 (53%), Gaps = 8/388 (2%)

Query: 166 FVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
           FV  +LL++Y KC     A   FE M  RN +SW+ M++      ++D  + LF+ M+ E
Sbjct: 11  FVGNSLLNMYGKCGGVEEAREFFESMTHRNVISWSTMVAAYAQRGDHDQALVLFQKMEEE 70

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
           GV+P  VT   VL ACA    +  G+ IH        D    +  AL+ MY +C+  L  
Sbjct: 71  GVEPNEVTFLSVLDACANAEAVEQGEMIHRLVARKKLDVGLIVGTALVGMYGKCSR-LIE 129

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           AR +F+    KDVV WS++I  Y+Q G + EA++LF  M L+ + PN + L++IL +C+ 
Sbjct: 130 ARQVFDGIVEKDVVTWSTMISAYAQLGHVREAIQLFGYMNLDGVRPNEIILMSILGACSS 189

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
              L+ G   H  ++  G   DVS GN L+ MY KCG + S+  +F  M  RD +SW+ +
Sbjct: 190 AGALAEGKMTHELVVICGFGADVSTGNTLIKMYGKCGDLASAKAVFGGMERRDLISWSAM 249

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK- 464
           ++    HG+ ++A   F  M   GV+PD +T +++L AC+  G + E   +   +  E  
Sbjct: 250 LAVIAEHGHCKDAFVHFRRMDLEGVKPDYVTFVSLLDACSLLGALVEGHVIHTRIRAEGF 309

Query: 465 KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEML 524
           +  + IE+    +D+ GK G ++ A ++   M  + +    +++++AC  H + + A  L
Sbjct: 310 QSVMYIEN--SLIDMYGKCGSLQAAREIFDRMSHR-NVITWTTMITACVQHEQGKEALEL 366

Query: 525 AHQLIEA--EPENAANYTLLSMVCSESG 550
             ++ +A  +P+  A  +++   CS SG
Sbjct: 367 FEEMEKAGVQPDQVAFLSIIH-SCSHSG 393



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 118/417 (28%), Positives = 199/417 (47%), Gaps = 12/417 (2%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           ++Q L L+ Q++   G+  N     SV+ ACA A+  +  G  +H    +   D   ++ 
Sbjct: 57  HDQALVLF-QKMEEEGVEPNEVTFLSVLDACANAEAVEQ-GEMIHRLVARKKLDVGLIVG 114

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
            +L+ MY K S+   A Q+FD +  +D ++W+++I+ + Q G    ++++F  M L G  
Sbjct: 115 TALVGMYGKCSRLIEARQVFDGIVEKDVVTWSTMISAYAQLGHVREAIQLFGYMNLDGVR 174

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
               +L  I+  CS  G L  G+  H LV++ G F   V     L+ +Y KC     A  
Sbjct: 175 PNEIILMSILGACSSAGALAEGKMTHELVVICG-FGADVSTGNTLIKMYGKCGDLASAKA 233

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VF  M  R+ +SW+AM++   +  +       FR M  EGVKP  VT   +L AC+ L  
Sbjct: 234 VFGGMERRDLISWSAMLAVIAEHGHCKDAFVHFRRMDLEGVKPDYVTFVSLLDACSLLGA 293

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L  G  IH      GF    ++  +L+ MY +C  +L  AR IF+R   ++V+ W+++I 
Sbjct: 294 LVEGHVIHTRIRAEGFQSVMYIENSLIDMYGKCG-SLQAAREIFDRMSHRNVITWTTMIT 352

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
              Q     EA++LF  M    ++P+ V  L+I+ SC+    +  G     Y +K   + 
Sbjct: 353 ACVQHEQGKEALELFEEMEKAGVQPDQVAFLSIIHSCSHSGLVEEG---RIYFLKMVEDQ 409

Query: 367 DVSIG----NALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFHGYGEEA 418
             + G      ++++  + G +  + ++   M      V W TL+S    H   E A
Sbjct: 410 SFTPGVEHFVGMLDLLGRSGKLNEAEELMEFMPVEPGVVGWNTLLSACKTHNDTERA 466


>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  294 bits (753), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 163/515 (31%), Positives = 284/515 (55%), Gaps = 6/515 (1%)

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           NSL+ +Y K  +   A  LFD MP R+ +SWN ++  +   G ++  L +F+ M      
Sbjct: 54  NSLVHLYVKCGQLGLARNLFDAMPLRNVVSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNA 113

Query: 127 LKAE-LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
              E +    +S CS  G ++ G Q H L+   G      +V +AL+ +YS+C H  +AL
Sbjct: 114 CPNEYVFTTALSACSHGGRVKEGMQCHGLLFKFG-LVCHQYVKSALVHMYSRCSHVELAL 172

Query: 186 RVFEQMV---IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
           +V + +    + +  S+ ++++  ++S   +  +++ R M  E V    VT   V+  CA
Sbjct: 173 QVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLCA 232

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
           ++RDL+ G  +H      G  FD  + + L+ MY +C E L+ AR +F+  + ++VV+W+
Sbjct: 233 QIRDLQLGLRVHARLLRGGLMFDEFVGSMLIDMYGKCGEVLN-ARNVFDGLQNRNVVVWT 291

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
           +++  Y Q+G   E++ LF+ M  E   PN  T   +L++C   + L HG  +H  + K 
Sbjct: 292 ALMTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHGDLLHARVEKL 351

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
           G    V + NAL+NMYSK GSI SS+ +F +M  RD ++W  +I GY  HG G++ALQ+F
Sbjct: 352 GFKNHVIVRNALINMYSKSGSIDSSYNVFTDMIYRDIITWNAMICGYSHHGLGKQALQVF 411

Query: 423 LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGK 482
            +M  +   P+ +T + +LSA +H GLVKE     N++M+  KI   +EHY C V LL +
Sbjct: 412 QDMVSAEECPNYVTFIGVLSAYSHLGLVKEGFYYLNHLMRNFKIEPGLEHYTCMVALLSR 471

Query: 483 SGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLL 542
           +G +++A   + T  +K       +L++AC +H   ++   +A  +++ +P +   YTLL
Sbjct: 472 AGLLDEAENFMKTTQVKWDVVAWRTLLNACHVHRNYDLGRRIAESVLQMDPHDVGTYTLL 531

Query: 543 SMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           S + +++  W G   + ++MR + + K  G S ++
Sbjct: 532 SNMYAKARRWDGVVTIRKLMRERNIKKEPGASWLD 566



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 118/469 (25%), Positives = 219/469 (46%), Gaps = 22/469 (4%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           + L L+K  +       N  +  + + AC++    +  G+Q H    K G      + ++
Sbjct: 99  EVLVLFKNMVSLQNACPNEYVFTTALSACSHGGRVKE-GMQCHGLLFKFGLVCHQYVKSA 157

Query: 69  LISMYAKFSKPESAYQLFDEMP---YRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
           L+ MY++ S  E A Q+ D +P     D  S+NS++N   ++G    ++E+ R M     
Sbjct: 158 LVHMYSRCSHVELALQVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDECV 217

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
                   G++ LC+QI +L+LG ++HA  ++ G      FV + L+D+Y KC   L A 
Sbjct: 218 AWDHVTYVGVMGLCAQIRDLQLGLRVHAR-LLRGGLMFDEFVGSMLIDMYGKCGEVLNAR 276

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
            VF+ +  RN V WTA+++  + +  ++  ++LF  M REG  P   T  ++L ACA + 
Sbjct: 277 NVFDGLQNRNVVVWTALMTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIA 336

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
            LR+G  +H      GF     +  AL++MY + + ++  +  +F     +D++ W+++I
Sbjct: 337 ALRHGDLLHARVEKLGFKNHVIVRNALINMYSK-SGSIDSSYNVFTDMIYRDIITWNAMI 395

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
            GYS  G   +A+++F  M      PN VT + +LS+ +    +  G     ++M+   N
Sbjct: 396 CGYSHHGLGKQALQVFQDMVSAEECPNYVTFIGVLSAYSHLGLVKEGFYYLNHLMR---N 452

Query: 366 FDVSIG----NALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFH---GYGEE 417
           F +  G      ++ + S+ G +  +         + D V+W TL++    H     G  
Sbjct: 453 FKIEPGLEHYTCMVALLSRAGLLDEAENFMKTTQVKWDVVAWRTLLNACHVHRNYDLGRR 512

Query: 418 ALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
             +  L+M     +P  +    +LS         +       +M+E+ I
Sbjct: 513 IAESVLQM-----DPHDVGTYTLLSNMYAKARRWDGVVTIRKLMRERNI 556



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 179/364 (49%), Gaps = 6/364 (1%)

Query: 138 LCSQIGELELGRQIHALVIVDGSFELSVFVS--TALLDLYSKCHHWLIALRVFEQMVIRN 195
           LC+ +  L  G+ +HA  ++         +S   +L+ LY KC    +A  +F+ M +RN
Sbjct: 21  LCADVKWLPFGKAMHAQFLIRNQTSNHSHISHLNSLVHLYVKCGQLGLARNLFDAMPLRN 80

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAM-QREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
            VSW  +++G +   N+   + LF+ M   +   P     T  L AC+    ++ G   H
Sbjct: 81  VVSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNACPNEYVFTTALSACSHGGRVKEGMQCH 140

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARII--FERTKVKDVVIWSSIIRGYSQSG 312
           G  +  G     ++ +AL+HMY  C+      +++       V D+  ++S++    +SG
Sbjct: 141 GLLFKFGLVCHQYVKSALVHMYSRCSHVELALQVLDTVPGEHVNDIFSYNSVLNALVESG 200

Query: 313 DLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN 372
              EA+++  RM  E +  + VT + ++  C +   L  GL VH  +++ GL FD  +G+
Sbjct: 201 RGEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQIRDLQLGLRVHARLLRGGLMFDEFVGS 260

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
            L++MY KCG + ++  +F+ +  R+ V WT L++ Y  +GY EE+L LF  M   G  P
Sbjct: 261 MLIDMYGKCGEVLNARNVFDGLQNRNVVVWTALMTAYLQNGYFEESLNLFTCMDREGTLP 320

Query: 433 DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKV 492
           +  T   +L+AC     ++  + L   V K       I   A  +++  KSG I+ +  V
Sbjct: 321 NEYTFAVLLNACAGIAALRHGDLLHARVEKLGFKNHVIVRNA-LINMYSKSGSIDSSYNV 379

Query: 493 VSTM 496
            + M
Sbjct: 380 FTDM 383



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 147/303 (48%), Gaps = 20/303 (6%)

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDH-HLS--AALMHMYCECTEALHP 285
           P+   L  +L  CA+++ L  GKA+H          +H H+S   +L+H+Y +C + L  
Sbjct: 10  PSLEELGKLLKLCADVKWLPFGKAMHAQFLIRNQTSNHSHISHLNSLVHLYVKCGQ-LGL 68

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM-RLERIEPNSVTLLAILSSCT 344
           AR +F+   +++VV W+ ++ GY   G+  E + LF  M  L+   PN       LS+C+
Sbjct: 69  ARNLFDAMPLRNVVSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNACPNEYVFTTALSACS 128

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA---RDFVS 401
               +  G+  H  + K GL     + +AL++MYS+C  +  + Q+ + +      D  S
Sbjct: 129 HGGRVKEGMQCHGLLFKFGLVCHQYVKSALVHMYSRCSHVELALQVLDTVPGEHVNDIFS 188

Query: 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHA-----GLVKEAETL 456
           + ++++     G GEEA+++   M +  V  D +T + ++  C        GL   A  L
Sbjct: 189 YNSVLNALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQIRDLQLGLRVHARLL 248

Query: 457 FNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG 516
              +M ++ +       +  +D+ GK G++ +A  V   +  + +  + ++L++A   +G
Sbjct: 249 RGGLMFDEFVG------SMLIDMYGKCGEVLNARNVFDGLQNR-NVVVWTALMTAYLQNG 301

Query: 517 RLE 519
             E
Sbjct: 302 YFE 304


>gi|449464614|ref|XP_004150024.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial-like [Cucumis sativus]
          Length = 647

 Score =  294 bits (753), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 186/574 (32%), Positives = 295/574 (51%), Gaps = 53/574 (9%)

Query: 9   QTLHLYKQELHPSGLYSNTA--ILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           Q+L  +K      GL  N     L   +KAC         G Q+H   + SG  +   +S
Sbjct: 56  QSLRFFKNNFR-WGLDGNADEFTLVLALKACC---GFPKLGRQIHGFVISSGFVSHITVS 111

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           NSL++MY K  + E A+ +F  +   D +SWN+I++ F ++     +L     M L G  
Sbjct: 112 NSLMNMYCKSGQLERAFSVFQNLHDPDIVSWNTILSGFEKS---ENALSFALRMNLNGVK 168

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
             +      +S C    E   G Q+H L +  G F+  VFV  AL+ +Y +  H + A +
Sbjct: 169 FDSVTYTTALSFCLDGEEFLFGWQLHTLALKCG-FKGDVFVGNALVTMYWRWEHLVDARK 227

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGID---LFRAMQREGVKPTRVTLTIVLLACAE 243
           VF++M  R+ VSW+AMI+G   +Q  D G+    +F  M REGVK   V +T  L  C  
Sbjct: 228 VFDEMPSRDRVSWSAMITGY--AQEGDNGLQAILVFVQMVREGVKFDNVPITGALSVCGH 285

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
            R+L  GK IH  A   G +    +   L+  Y +C E +  A+ +FE    ++V+  ++
Sbjct: 286 ERNLELGKQIHCVAVKTGHETHTSVGNVLISTYSKC-EIIEDAKAVFELINDRNVISLNA 344

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           I    S   D+S                                 L HG   H +++K G
Sbjct: 345 I----SAGEDIS---------------------------------LKHGQRCHSHLIKVG 367

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
           LN D  I  AL++MY+K GSI  S ++FNE +     +WT LISGY  HG  E  ++LF 
Sbjct: 368 LNVDPIISGALLDMYAKRGSIQESQRVFNETSKESQFAWTALISGYAQHGDYESVIKLFE 427

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS 483
           EM++  ++PDA+  L++L+AC+   +V      FN ++K+  I    EHY+C VD+LG++
Sbjct: 428 EMEKERIKPDAVIFLSVLTACSRNRMVDMGRQFFNMMIKDHMIEPEGEHYSCMVDMLGRA 487

Query: 484 GKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLS 543
           G++E+A ++++ +P  P    L SL+ ACR HG +E+AE +A+ L++ EP  +  Y L+S
Sbjct: 488 GRLEEAEEILARIPGGPGVSALQSLLGACRTHGNVEMAERIANDLMKKEPLESGPYVLMS 547

Query: 544 MVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            + ++ G+W    +V + MR +G+ K  GFS ++
Sbjct: 548 NLYAQKGDWEKVAKVRKEMRERGVMKEIGFSWVD 581



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 140/498 (28%), Positives = 235/498 (47%), Gaps = 29/498 (5%)

Query: 83  YQLFDEMPYRDTISWNSII-NCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           + LFD+ P  +  S+N ++ N   ++G + +SL  F+  +  G    A+    +++L + 
Sbjct: 27  HNLFDQSPPPNAASFNRVLLNYLPRDGAF-QSLRFFKNNFRWGLDGNADEFTLVLALKAC 85

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
            G  +LGRQIH  VI  G F   + VS +L+++Y K      A  VF+ +   + VSW  
Sbjct: 86  CGFPKLGRQIHGFVISSG-FVSHITVSNSLMNMYCKSGQLERAFSVFQNLHDPDIVSWNT 144

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           ++SG   S+N    +     M   GVK   VT T  L  C +  +   G  +H  A  CG
Sbjct: 145 ILSGFEKSEN---ALSFALRMNLNGVKFDSVTYTTALSFCLDGEEFLFGWQLHTLALKCG 201

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS-EAMKL 320
           F  D  +  AL+ MY    E L  AR +F+    +D V WS++I GY+Q GD   +A+ +
Sbjct: 202 FKGDVFVGNALVTMYWRW-EHLVDARKVFDEMPSRDRVSWSAMITGYAQEGDNGLQAILV 260

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
           F +M  E ++ ++V +   LS C  +  L  G  +HC  +K G     S+GN L++ YSK
Sbjct: 261 FVQMVREGVKFDNVPITGALSVCGHERNLELGKQIHCVAVKTGHETHTSVGNVLISTYSK 320

Query: 381 CGSITSSHQIFNEMAARDFVSWTTLISGYGFH-GYGEEALQLFLEMQESGVEPDAITVLA 439
           C  I  +  +F  +  R+ +S   + +G      +G+      +++   G+  D I   A
Sbjct: 321 CEIIEDAKAVFELINDRNVISLNAISAGEDISLKHGQRCHSHLIKV---GLNVDPIISGA 377

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP-- 497
           +L      G ++E++ +FN   KE + A     +   +    + G  E   K+   M   
Sbjct: 378 LLDMYAKRGSIQESQRVFNETSKESQFA-----WTALISGYAQHGDYESVIKLFEEMEKE 432

Query: 498 -MKPSTRILSSLVSACRIH-----GRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGN 551
            +KP   I  S+++AC  +     GR     M+   +IE E E   +Y+ +  +   +G 
Sbjct: 433 RIKPDAVIFLSVLTACSRNRMVDMGRQFFNMMIKDHMIEPEGE---HYSCMVDMLGRAGR 489

Query: 552 WLGAEEVW-RVMRAKGLS 568
              AEE+  R+    G+S
Sbjct: 490 LEEAEEILARIPGGPGVS 507


>gi|297841915|ref|XP_002888839.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297334680|gb|EFH65098.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 682

 Score =  294 bits (753), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 181/613 (29%), Positives = 311/613 (50%), Gaps = 49/613 (7%)

Query: 9   QTLHLYKQELHPSG------LYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDAD 62
           +T  L + +  PS       L+S  ++L + +   A+       GLQ+H   + SG +  
Sbjct: 24  KTFSLLRLQSSPSAVSGDVVLHSAASLLSACVDVLAFVP-----GLQIHAHCVSSGVEYH 78

Query: 63  PVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL 122
             +   L++ Y+ F+    A  + +       + WN +I  + +N  +   +  ++ M  
Sbjct: 79  SALVPKLVTFYSAFNLHREAQSINENSDILHPLPWNVLIASYAKNELFEEVVAAYKRMVS 138

Query: 123 CGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL 182
            G    A     ++  C +  ++  GR +H  + V  S++ S++V  AL+ +Y +  +  
Sbjct: 139 KGIRPDAFTYPSVLKACGETLDVASGRVVHGSIEVS-SYKCSLYVCNALISMYKRFGNVG 197

Query: 183 IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIV----- 237
           IA R+F+ M  R+ VSW A+I+       +    +LF  M+  GV+ + +T  I+     
Sbjct: 198 IARRLFDHMSERDAVSWNAVINCYASVGMWSEAFELFDKMRFSGVEVSVITWNIISGGYL 257

Query: 238 ------------------------------LLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
                                         L AC+ +  +R GK IHG A    +D   +
Sbjct: 258 HTGNYVGALGLISRMRNFPTSLDPVAMIIGLKACSLIGAIRLGKEIHGLAIHRSYDGIDN 317

Query: 268 LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
           +   L+ MY +C + L  A I+F++T+   +  W+SII GY+Q     EA  L   M L 
Sbjct: 318 VRNTLITMYSKCDD-LRNAFIVFQKTEENSLCTWNSIISGYAQVNKSEEASYLLREMLLA 376

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS-IGNALMNMYSKCGSITS 386
             +PN +TL +IL  C R + L HG   HCYI++     D + + N+L+++Y+K G I +
Sbjct: 377 GFQPNFITLASILPLCARIANLQHGKEFHCYILRRKCFKDYTMLWNSLVDVYAKSGKIVA 436

Query: 387 SHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH 446
           + Q+ N M+  D V++T+LI GYG  G G  AL LF EM  SG++PD +T++A+LSAC+H
Sbjct: 437 AKQVSNLMSEIDEVTYTSLIDGYGNQGEGRVALALFDEMIRSGIKPDPVTMVAVLSACSH 496

Query: 447 AGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILS 506
           + LV E + LF  +  +  I   ++H++C VDL G++G +  A  ++  MP +PS    +
Sbjct: 497 SKLVHEGQRLFMKMQPKYGIRPCLQHFSCMVDLYGRAGFLAKAKDIIHRMPYEPSGATWA 556

Query: 507 SLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566
           +L++AC IHG  E+ +  A +L+E +PEN   Y L++ + + +G+W    EV  +MR  G
Sbjct: 557 TLLNACHIHGNTEIGKWAAEKLLEMKPENPGYYVLIANMYATAGSWSKLAEVRTIMRDLG 616

Query: 567 LSKSYGFSRIENE 579
           + K  G + I  +
Sbjct: 617 VRKDPGCAWINTD 629



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 312 GDLSEAMKLFSRMRLERIEPNSVT-------LLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
           G L +A K FS +RL+   P++V+         ++LS+C        GL +H + + +G+
Sbjct: 17  GHLHDAFKTFSLLRLQS-SPSAVSGDVVLHSAASLLSACVDVLAFVPGLQIHAHCVSSGV 75

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
            +  ++   L+  YS       +  I         + W  LI+ Y  +   EE +  +  
Sbjct: 76  EYHSALVPKLVTFYSAFNLHREAQSINENSDILHPLPWNVLIASYAKNELFEEVVAAYKR 135

Query: 425 MQESGVEPDAITVLAILSAC 444
           M   G+ PDA T  ++L AC
Sbjct: 136 MVSKGIRPDAFTYPSVLKAC 155


>gi|242062166|ref|XP_002452372.1| hypothetical protein SORBIDRAFT_04g024590 [Sorghum bicolor]
 gi|241932203|gb|EES05348.1| hypothetical protein SORBIDRAFT_04g024590 [Sorghum bicolor]
          Length = 691

 Score =  294 bits (753), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 168/502 (33%), Positives = 277/502 (55%), Gaps = 5/502 (0%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           +E+  SG   N      V+ AC  ++  +  G Q+H   +++G D D   +N+L+ MY+K
Sbjct: 191 REMVWSGERPNEFGFSCVVNACTGSRDWET-GRQVHGMVVRTGYDKDVFTANALVDMYSK 249

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
               E A  +F+++P  D +SWN++I     +G   R+LE+  +M   G V     L+ +
Sbjct: 250 LGDIEMAAVVFEKIPAADVVSWNALIAGCVTHGHDHRALELLLQMKPLGVVPNVFTLSSV 309

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           +  C+  G   LGRQIH  +I     +   FV+  L+D+Y+K      A +VF+ M  R+
Sbjct: 310 LKACAGAGAFNLGRQIHGFMI-KADADSDEFVAVGLVDMYAKDGFLDDARKVFDFMPRRD 368

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK--PTRVTLTIVLLACAELRDLRNGKAI 253
            + W A+ISGC     +   + LF  M++EG+     R TL  VL + A L  + + K +
Sbjct: 369 LILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLAAVLKSTASLEAICHTKQV 428

Query: 254 HGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGD 313
           H  A   G   D H+   L+  Y +C   L  A  +FE +   D++  +S++   SQ   
Sbjct: 429 HALAEKIGLLSDSHVVNGLIDSYWKCGR-LDYAIKVFEESCSDDIISSTSMMTALSQCDH 487

Query: 314 LSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNA 373
             +A+KLF +M  + +EP+S  L ++L++C   S    G  VH +++K     DV  GNA
Sbjct: 488 GEDAIKLFVQMLRKGLEPDSFVLSSLLNACASLSAYEQGKQVHAHLIKRQFTSDVFAGNA 547

Query: 374 LMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPD 433
           L+  Y+KCGSI  +   F+ +  +  VSW+ +I G   HG+G+ AL+LF  M + GV P+
Sbjct: 548 LVYTYAKCGSIEDADMAFSGLPEKGVVSWSAMIGGLAQHGHGKRALELFHRMLDEGVAPN 607

Query: 434 AITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVV 493
            IT+ ++LSACNHAGLV +A+  F ++ +   I    EHYAC +D+LG++GK++DA ++V
Sbjct: 608 NITLTSVLSACNHAGLVDDAKKYFESMKEAFGIDRTEEHYACMIDILGRAGKLKDAMELV 667

Query: 494 STMPMKPSTRILSSLVSACRIH 515
           + MP + +  +  +L+ A R++
Sbjct: 668 NNMPFQANAAVWGALLGASRLN 689



 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 166/570 (29%), Positives = 290/570 (50%), Gaps = 19/570 (3%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           + +   G+  N   LP V+K CA       FG Q+H  A+ +    D  ++N+L++MY  
Sbjct: 92  RSMRGRGVPCNEYALPIVLK-CA---PDVRFGAQVHALAVATRLIQDVFVTNALVAMYGG 147

Query: 76  FSKPESAYQLFDEM-PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAG 134
           F   + A ++FDE    R+ +SWN +I+ + +N     ++ +FREM   G        + 
Sbjct: 148 FGMVDEAKRIFDEPGGERNAVSWNGMISAYVKNDRCRDAVGVFREMVWSGERPNEFGFSC 207

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           +++ C+   + E GRQ+H +V+  G ++  VF + AL+D+YSK     +A  VFE++   
Sbjct: 208 VVNACTGSRDWETGRQVHGMVVRTG-YDKDVFTANALVDMYSKLGDIEMAAVVFEKIPAA 266

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
           + VSW A+I+GC+   +    ++L   M+  GV P   TL+ VL ACA       G+ IH
Sbjct: 267 DVVSWNALIAGCVTHGHDHRALELLLQMKPLGVVPNVFTLSSVLKACAGAGAFNLGRQIH 326

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
           G+      D D  ++  L+ MY +    L  AR +F+    +D+++W+++I G S  G  
Sbjct: 327 GFMIKADADSDEFVAVGLVDMYAK-DGFLDDARKVFDFMPRRDLILWNALISGCSHDGRH 385

Query: 315 SEAMKLFSRMRLE--RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN 372
            E + LF RMR E   ++ N  TL A+L S      + H   VH    K GL  D  + N
Sbjct: 386 GEVLSLFHRMRKEGLDLDVNRTTLAAVLKSTASLEAICHTKQVHALAEKIGLLSDSHVVN 445

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
            L++ Y KCG +  + ++F E  + D +S T++++      +GE+A++LF++M   G+EP
Sbjct: 446 GLIDSYWKCGRLDYAIKVFEESCSDDIISSTSMMTALSQCDHGEDAIKLFVQMLRKGLEP 505

Query: 433 DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKV 492
           D+  + ++L+AC      ++ + +  +++K +  +      A  V    K G IEDA   
Sbjct: 506 DSFVLSSLLNACASLSAYEQGKQVHAHLIKRQFTSDVFAGNA-LVYTYAKCGSIEDADMA 564

Query: 493 VSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE--AEPENAANYTLLSMVCSESG 550
            S +P K      S+++     HG  + A  L H++++    P N    ++LS  C+ +G
Sbjct: 565 FSGLPEKGVVS-WSAMIGGLAQHGHGKRALELFHRMLDEGVAPNNITLTSVLS-ACNHAG 622

Query: 551 NWLGAEEVWRVMRAKGLSKSYGFSRIENEY 580
               A++ +  M+     +++G  R E  Y
Sbjct: 623 LVDDAKKYFESMK-----EAFGIDRTEEHY 647



 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 148/502 (29%), Positives = 246/502 (49%), Gaps = 43/502 (8%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G  LH   LKSG  A    SN L+S Y++   P +A  +FDE+P    +SW+S++  ++ 
Sbjct: 23  GAHLHSHLLKSGLLAS--YSNHLLSFYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSN 80

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           NG    +L  FR M   G V   E    I+  C+   ++  G Q+HAL +     +  VF
Sbjct: 81  NGMPRDALWAFRSMRGRG-VPCNEYALPIVLKCAP--DVRFGAQVHALAVATRLIQ-DVF 136

Query: 167 VSTALLDLYSKCHHWLIALRVF-EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
           V+ AL+ +Y        A R+F E    RN VSW  MIS  + +      + +FR M   
Sbjct: 137 VTNALVAMYGGFGMVDEAKRIFDEPGGERNAVSWNGMISAYVKNDRCRDAVGVFREMVWS 196

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
           G +P     + V+ AC   RD   G+ +HG     G+D D   + AL+ MY +  + +  
Sbjct: 197 GERPNEFGFSCVVNACTGSRDWETGRQVHGMVVRTGYDKDVFTANALVDMYSKLGD-IEM 255

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           A ++FE+    DVV W+++I G    G    A++L  +M+   + PN  TL ++L +C  
Sbjct: 256 AAVVFEKIPAADVVSWNALIAGCVTHGHDHRALELLLQMKPLGVVPNVFTLSSVLKACAG 315

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
               + G  +H +++KA  + D  +   L++MY+K G +  + ++F+ M  RD + W  L
Sbjct: 316 AGAFNLGRQIHGFMIKADADSDEFVAVGLVDMYAKDGFLDDARKVFDFMPRRDLILWNAL 375

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDA--ITVLAILSA-------CN----HA----- 447
           ISG    G   E L LF  M++ G++ D    T+ A+L +       C+    HA     
Sbjct: 376 ISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLAAVLKSTASLEAICHTKQVHALAEKI 435

Query: 448 GLVKEAET---LFNNVMKEKKIALAIEHY--ACYVDLLGKSGKI---------EDACKVV 493
           GL+ ++     L ++  K  ++  AI+ +  +C  D++  +  +         EDA K+ 
Sbjct: 436 GLLSDSHVVNGLIDSYWKCGRLDYAIKVFEESCSDDIISSTSMMTALSQCDHGEDAIKLF 495

Query: 494 STM---PMKPSTRILSSLVSAC 512
             M    ++P + +LSSL++AC
Sbjct: 496 VQMLRKGLEPDSFVLSSLLNAC 517



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 112/379 (29%), Positives = 180/379 (47%), Gaps = 7/379 (1%)

Query: 168 STALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV 227
           S  LL  YS+C     A  VF+++     VSW+++++   ++      +  FR+M+  GV
Sbjct: 40  SNHLLSFYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALWAFRSMRGRGV 99

Query: 228 KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPAR 287
                 L IVL  CA   D+R G  +H  A       D  ++ AL+ MY          R
Sbjct: 100 PCNEYALPIVL-KCAP--DVRFGAQVHALAVATRLIQDVFVTNALVAMYGGFGMVDEAKR 156

Query: 288 IIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQS 347
           I  E    ++ V W+ +I  Y ++    +A+ +F  M      PN      ++++CT   
Sbjct: 157 IFDEPGGERNAVSWNGMISAYVKNDRCRDAVGVFREMVWSGERPNEFGFSCVVNACTGSR 216

Query: 348 FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLIS 407
               G  VH  +++ G + DV   NAL++MYSK G I  +  +F ++ A D VSW  LI+
Sbjct: 217 DWETGRQVHGMVVRTGYDKDVFTANALVDMYSKLGDIEMAAVVFEKIPAADVVSWNALIA 276

Query: 408 GYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIA 467
           G   HG+   AL+L L+M+  GV P+  T+ ++L AC  AG       +   ++K    A
Sbjct: 277 GCVTHGHDHRALELLLQMKPLGVVPNVFTLSSVLKACAGAGAFNLGRQIHGFMIKAD--A 334

Query: 468 LAIEHYAC-YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAH 526
            + E  A   VD+  K G ++DA KV   MP +    + ++L+S C   GR      L H
Sbjct: 335 DSDEFVAVGLVDMYAKDGFLDDARKVFDFMPRRDLI-LWNALISGCSHDGRHGEVLSLFH 393

Query: 527 QLIEAEPENAANYTLLSMV 545
           ++ +   +   N T L+ V
Sbjct: 394 RMRKEGLDLDVNRTTLAAV 412


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  294 bits (753), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 164/465 (35%), Positives = 261/465 (56%), Gaps = 4/465 (0%)

Query: 115 EMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDL 174
           E   EM + G  ++ +    +++ C     +  G+++HA +I    +E  V++ T L+ L
Sbjct: 463 EALLEMGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMI-KTCYEPPVYLRTRLIVL 521

Query: 175 YSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTL 234
           Y+KC     A RV ++M  RN VSWTAMISG          + LF  M   G  P   T 
Sbjct: 522 YNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTF 581

Query: 235 TIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTK 294
             VL +C      + G+ IH       F+    + ++L+ MY +  +    AR +F+   
Sbjct: 582 ATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICE-ARRVFDGLP 640

Query: 295 VKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG 354
            +DVV  ++II GY+Q G   EA+ LF R++ E +  N VT  ++L++ +  + L HG  
Sbjct: 641 ERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQ 700

Query: 355 VHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGY 414
           VH ++++A L F V + N+L++MYSKCGS+T S +IF+ M  R  +SW  ++ GY  HG 
Sbjct: 701 VHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGL 760

Query: 415 GEEALQLF-LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK-IALAIEH 472
           G EA++LF L  +E+ V+PD++T LA+LS C+H G+      +F  ++ +K      IEH
Sbjct: 761 GREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEH 820

Query: 473 YACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE 532
           Y C VDL G++G++E+A + +  MP +P+  I  SL+ ACR+H  + + E +A +L+E E
Sbjct: 821 YGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIE 880

Query: 533 PENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            ENA NY +LS + + +G W     V  +M+ K + K  G S IE
Sbjct: 881 SENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIE 925



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 132/442 (29%), Positives = 228/442 (51%), Gaps = 15/442 (3%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPY 91
           SV+  C  +QT    G ++H   +K+  +    +   LI +Y K      A ++ DEMP 
Sbjct: 482 SVLTECI-SQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPE 540

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQI 151
           R+ +SW ++I+ ++Q G+   +L +F EM + G        A +++ C+     +LGRQI
Sbjct: 541 RNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQI 600

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQN 211
           H+LVI   SFE  +FV ++LLD+Y+K      A RVF+ +  R+ VS TA+ISG      
Sbjct: 601 HSLVI-KTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGL 659

Query: 212 YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAA 271
            +  +DLFR +QREG++   VT   VL A + L  L +G+ +H +       F   L  +
Sbjct: 660 DEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNS 719

Query: 272 LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE-RIE 330
           L+ MY +C  +L  +R IF+    + V+ W++++ GYS+ G   EA++LF  M+ E +++
Sbjct: 720 LIDMYSKCG-SLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVK 778

Query: 331 PNSVTLLAILSSCTRQSFLSHGLGVHCYIM--KAGLNFDVSIGNALMNMYSKCGSITSSH 388
           P+SVT LA+LS C+       GL +   ++  K G   ++     +++++ + G +  + 
Sbjct: 779 PDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAF 838

Query: 389 QIFNEMAARDFVS-WTTLISGYGFHG---YGEEALQLFLEMQESGVEPDAITVLAILSAC 444
           +   +M      + W +L+     H     GE   +  LE++          +L+ L A 
Sbjct: 839 EFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENA--GNYVILSNLYAS 896

Query: 445 NHAGLVKEAETLFNNVMKEKKI 466
             AG   +  T+   +MKEK +
Sbjct: 897 --AGRWDDVRTV-RELMKEKAV 915


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  294 bits (753), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 167/530 (31%), Positives = 299/530 (56%), Gaps = 3/530 (0%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           Q+H   +K G D+  V+SNSL+  Y K      A+QLF+++P RD++++N+++  +++ G
Sbjct: 219 QVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEG 278

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
           F   ++ +F +M   G+       A I++   Q+ ++E G+Q+H  V V  +F  +VFV+
Sbjct: 279 FNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFV-VKCNFVWNVFVA 337

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
            ALLD YSK    + A ++F +M   + +S+  +++    +      ++LF+ +Q  G  
Sbjct: 338 NALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGFD 397

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
                   +L   A   +L  G+ IH          +  +  +L+ MY +C E    A  
Sbjct: 398 RRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGE-FGEANR 456

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
           IF    ++  V W+++I  Y Q G   + +KLF  M+  +I  ++ T  +I+ +C   + 
Sbjct: 457 IFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRACASLAS 516

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
           L+ G  +H +I+ +G   +V  G+AL++MY+KCGSI  + Q+F EM  R+ VSW  LIS 
Sbjct: 517 LTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQMFQEMPVRNSVSWNALISA 576

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468
           Y  +G G+  L+LF EM  SG++PD++++L+IL AC+H GLV+E    F+++ +  K+  
Sbjct: 577 YAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSILCACSHCGLVEEGLQYFDSMTRIYKLVP 636

Query: 469 AIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
             EHYA  +D+L + G+ ++A K+++ MP +P   + SS++++C IH   E+A+  A+QL
Sbjct: 637 KKEHYASTIDMLCRGGRFDEAEKLMAQMPFEPDEIMWSSVLNSCGIHKNQELAKKAANQL 696

Query: 529 IEAEP-ENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
              +   +AA Y  +S + + +G W    +V + MR +G+ K   +S +E
Sbjct: 697 FNMKVLRDAAPYVTMSNIYAAAGEWDNVGKVKKAMRERGVKKVPAYSWVE 746



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 128/484 (26%), Positives = 249/484 (51%), Gaps = 9/484 (1%)

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
           +N++I  Y K      A  LFD M  R  ++W  +I  + QN  +  +  +F EM   G 
Sbjct: 135 TNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGI 194

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
                 LA ++S  ++   +   RQ+H+ VI  G ++ ++ VS +LLD Y K     +A 
Sbjct: 195 DPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLG-YDSTLVVSNSLLDSYCKTRSLGLAF 253

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
           ++F  +  R+ V++ A+++G          I+LF  MQ  G +PT  T   +L A  +L 
Sbjct: 254 QLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLD 313

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
           D+  G+ +HG+   C F ++  ++ AL+  Y +    +  +++ +E  +V D + ++ ++
Sbjct: 314 DIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEV-DGISYNVLV 372

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
             Y+ +G + E+++LF  ++    +  +     +LS       L  G  +H   +     
Sbjct: 373 TCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAI 432

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            ++ +GN+L++MY+KCG    +++IF+++A +  V WT +IS Y   G  E+ L+LF+EM
Sbjct: 433 SEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEM 492

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
           Q + +  DA T  +I+ AC     +   + L ++++    I+      A  VD+  K G 
Sbjct: 493 QRAKIGADAATYASIVRACASLASLTLGKQLHSHIIGSGYISNVFSGSA-LVDMYAKCGS 551

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLS 543
           I+DA ++   MP++ S    ++L+SA   +G  +    L  +++ +  +P++    +LLS
Sbjct: 552 IKDALQMFQEMPVRNSVS-WNALISAYAQNGDGDCTLRLFEEMVRSGLQPDSV---SLLS 607

Query: 544 MVCS 547
           ++C+
Sbjct: 608 ILCA 611



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 129/455 (28%), Positives = 224/455 (49%), Gaps = 44/455 (9%)

Query: 46  FGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT 105
           FG Q+H   +K     +  ++N+L+  Y+K  +   A +LF EMP  D IS+N ++ C+ 
Sbjct: 317 FGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYA 376

Query: 106 QNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSV 165
            NG    SLE+F+E+   GF  +    A ++S+ +    L++GRQIH+  IV  +    +
Sbjct: 377 WNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAIS-EI 435

Query: 166 FVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
            V  +L+D+Y+KC  +  A R+F  + I++ V WTAMIS  +    ++ G+ LF  MQR 
Sbjct: 436 LVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRA 495

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
            +     T   ++ ACA L  L  GK +H +    G+  +    +AL+ MY +C  ++  
Sbjct: 496 KIGADAATYASIVRACASLASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCG-SIKD 554

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           A  +F+   V++ V W+++I  Y+Q+GD    ++LF  M    ++P+SV+LL+IL +C+ 
Sbjct: 555 ALQMFQEMPVRNSVSWNALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSILCACS- 613

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
                     HC +++ GL +                   S  +I+  +  ++  + T  
Sbjct: 614 ----------HCGLVEEGLQY-----------------FDSMTRIYKLVPKKEHYASTID 646

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC----NHAGLVKEAETLFNNVM 461
           +   G  G  +EA +L  +M     EPD I   ++L++C    N     K A  LFN   
Sbjct: 647 MLCRG--GRFDEAEKLMAQMP---FEPDEIMWSSVLNSCGIHKNQELAKKAANQLFN--- 698

Query: 462 KEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
              K+      Y    ++   +G+ ++  KV   M
Sbjct: 699 --MKVLRDAAPYVTMSNIYAAAGEWDNVGKVKKAM 731



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/377 (25%), Positives = 186/377 (49%), Gaps = 20/377 (5%)

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
           Q G+L   R++      D     ++F +  ++  Y K  +   A  +F+ M  R  V+WT
Sbjct: 113 QRGDLNGARKL-----FDEMPHKNIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWT 167

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
            +I G   +  +     LF  M R G+ P  V+L  +L    E   +   + +H +    
Sbjct: 168 MLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKL 227

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
           G+D    +S +L+  YC+ T +L  A  +F     +D V +++++ GYS+ G   EA+ L
Sbjct: 228 GYDSTLVVSNSLLDSYCK-TRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINL 286

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
           F +M+     P   T  AIL++  +   +  G  VH +++K    ++V + NAL++ YSK
Sbjct: 287 FFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSK 346

Query: 381 CGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE----PDAIT 436
              +  + ++F EM   D +S+  L++ Y ++G  +E+L+LF E+Q +G +    P A  
Sbjct: 347 HDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATL 406

Query: 437 V-LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           + +A +S     G    ++T+  + + E  +  ++      VD+  K G+  +A ++ S 
Sbjct: 407 LSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSL------VDMYAKCGEFGEANRIFSD 460

Query: 496 MPMK---PSTRILSSLV 509
           + ++   P T ++SS V
Sbjct: 461 LAIQSSVPWTAMISSYV 477



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 65/160 (40%), Gaps = 36/160 (22%)

Query: 339 ILSSCTRQ-----SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNE 393
           I+  CTR      +     L V   I+K G N +    N L+  + + G +  + ++F+E
Sbjct: 67  IIKPCTRNLVTTLTAPKPHLHVDASIIKTGFNPNTYRSNFLVKSFLQRGDLNGARKLFDE 126

Query: 394 MAARDFVSWTTLISGYG--------------------------FHGYGE-----EALQLF 422
           M  ++  S  T+I GY                             GY +     EA  LF
Sbjct: 127 MPHKNIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLF 186

Query: 423 LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462
           +EM   G++PD +++  +LS       V E   + ++V+K
Sbjct: 187 IEMGRHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIK 226


>gi|6729034|gb|AAF27030.1|AC009177_20 hypothetical protein [Arabidopsis thaliana]
          Length = 548

 Score =  294 bits (753), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 172/538 (31%), Positives = 286/538 (53%), Gaps = 19/538 (3%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPES-----AYQLFDEMPYRDTISWNSIINC 103
           QLH   +KS    + +  + LI      + PE+     A  +F+ +       WNS+I  
Sbjct: 24  QLHGLMIKSSVIRNVIPLSRLIDFCT--TCPETMNLSYARSVFESIDCPSVYIWNSMIRG 81

Query: 104 FTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFEL 163
           ++ +    ++L  ++EM   G+         ++  CS + +++ G  +H  V+  G FE+
Sbjct: 82  YSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTG-FEV 140

Query: 164 SVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQ 223
           +++VST LL +Y  C      LRVFE +   N V+W ++ISG +++  +   I+ FR MQ
Sbjct: 141 NMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAFREMQ 200

Query: 224 REGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEAL 283
             GVK     +  +L+AC        G+    Y +     F+  L+ +L+ MY +C + L
Sbjct: 201 SNGVKANETIMVDLLVAC--------GRCFDPY-FQSKVGFNVILATSLIDMYAKCGD-L 250

Query: 284 HPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC 343
             AR +F+    + +V W+SII GYSQ+GD  EA+ +F  M    I P+ VT L+++ + 
Sbjct: 251 RTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDLGIAPDKVTFLSVIRAS 310

Query: 344 TRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWT 403
             Q     G  +H Y+ K G   D +I  AL+NMY+K G   S+ + F ++  +D ++WT
Sbjct: 311 MIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAKTGDAESAKKAFEDLEKKDTIAWT 370

Query: 404 TLISGYGFHGYGEEALQLFLEMQESG-VEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462
            +I G   HG+G EAL +F  MQE G   PD IT L +L AC+H GLV+E +  F  +  
Sbjct: 371 VVIIGLASHGHGNEALSIFQRMQEKGNATPDGITYLGVLYACSHIGLVEEGQRYFAEMRD 430

Query: 463 EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAE 522
              +   +EHY C VD+L ++G+ E+A ++V TMP+KP+  I  +L++ C IH  LE+ +
Sbjct: 431 LHGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVKPNVNIWGALLNGCDIHENLELTD 490

Query: 523 MLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIENEY 580
            +   + E E   +  Y LLS + +++G W   + +   M++K + K  G S +E  +
Sbjct: 491 RIRSMVAEPEELGSGIYVLLSNIYAKAGRWADVKLIRESMKSKRVDKVLGHSSVETMF 548



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 114/470 (24%), Positives = 224/470 (47%), Gaps = 31/470 (6%)

Query: 13  LYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISM 72
           ++ QE+   G   +    P V+KAC+  +  Q FG  +H   +K+G + +  +S  L+ M
Sbjct: 93  IFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQ-FGSCVHGFVVKTGFEVNMYVSTCLLHM 151

Query: 73  YAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELL 132
           Y    +     ++F+++P  + ++W S+I+ F  N  +  ++E FREM   G      ++
Sbjct: 152 YMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAFREMQSNGVKANETIM 211

Query: 133 AGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV 192
             ++  C +  +     ++            +V ++T+L+D+Y+KC     A  +F+ M 
Sbjct: 212 VDLLVACGRCFDPYFQSKVG----------FNVILATSLIDMYAKCGDLRTARYLFDGMP 261

Query: 193 IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA-----CAELRDL 247
            R  VSW ++I+G   + + +  + +F  M   G+ P +VT   V+ A     C++L   
Sbjct: 262 ERTLVSWNSIITGYSQNGDAEEALCMFLDMLDLGIAPDKVTFLSVIRASMIQGCSQL--- 318

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
             G++IH Y    GF  D  +  AL++MY +  +A   A+  FE  + KD + W+ +I G
Sbjct: 319 --GQSIHAYVSKTGFVKDAAIVCALVNMYAKTGDA-ESAKKAFEDLEKKDTIAWTVVIIG 375

Query: 308 YSQSGDLSEAMKLFSRMRLE-RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA-GLN 365
            +  G  +EA+ +F RM+ +    P+ +T L +L +C+    +  G      +    GL 
Sbjct: 376 LASHGHGNEALSIFQRMQEKGNATPDGITYLGVLYACSHIGLVEEGQRYFAEMRDLHGLE 435

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS-WTTLISGYGFHGYGEEALQLFLE 424
             V     ++++ S+ G    + ++   M  +  V+ W  L++G   H    E L+L   
Sbjct: 436 PTVEHYGCMVDILSRAGRFEEAERLVKTMPVKPNVNIWGALLNGCDIH----ENLELTDR 491

Query: 425 MQESGVEPDAI-TVLAILSACNHAGLVKEAET-LFNNVMKEKKIALAIEH 472
           ++    EP+ + + + +L +  +A   + A+  L    MK K++   + H
Sbjct: 492 IRSMVAEPEELGSGIYVLLSNIYAKAGRWADVKLIRESMKSKRVDKVLGH 541


>gi|115479139|ref|NP_001063163.1| Os09g0413300 [Oryza sativa Japonica Group]
 gi|113631396|dbj|BAF25077.1| Os09g0413300 [Oryza sativa Japonica Group]
          Length = 810

 Score =  294 bits (752), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 185/568 (32%), Positives = 310/568 (54%), Gaps = 18/568 (3%)

Query: 13  LYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISM 72
           L  +E+  +G+  N     S++ ACA     +    Q+H   LK+    D V+  +LIS 
Sbjct: 257 LLLREMVRNGVAINKYTATSILLACAQMSMVRE-ASQIHGMVLKTEMYLDCVVKEALIST 315

Query: 73  YAKFSKPESAYQLFDEMPYRDTISWNSIINCF---TQNGFYVRSLEMFREMYLCGFVLKA 129
           Y  F   E + ++F+E     T+S  SI + F     N   +RS+++ R M+  G     
Sbjct: 316 YTNFGFIELSEKVFEEA---GTVSNRSIWSAFISGVSNHSLLRSVQLLRRMFHQGLRPND 372

Query: 130 ELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
           +  A + S    +  +E G Q+H+  I +G F   + V +AL  +YS+C +   + +VFE
Sbjct: 373 KCYASVFS---SVNSIEFGGQLHSSAIKEG-FIHGILVGSALSTMYSRCDNVQDSYKVFE 428

Query: 190 QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
           +M  R+ VSWTAM++G     +       FR M  +G KP  V+LT +L AC     L  
Sbjct: 429 EMQERDGVSWTAMVAGFATHGHSVEAFLTFRNMILDGFKPDHVSLTAILSACNRPECLLK 488

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
           GK +HG+     +     ++   + MY +C + +  AR IF+ T  KD V+WSS+I GY+
Sbjct: 489 GKEVHGHTLRV-YGETTFINDCFISMYSKC-QGVQTARRIFDATPRKDQVMWSSMISGYA 546

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
            +G   EA+ LF  M    I  +S    +ILS C   +   +   +H Y +KAG+  D S
Sbjct: 547 TNGCGEEAISLFQLMVAASIRIDSYICSSILSLCADIARPFYCKPLHGYAIKAGILSDQS 606

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
           + ++L+ +YS+ G++  S ++F+E++  D V+WTT+I GY  HG  + AL +F  M + G
Sbjct: 607 VSSSLVKVYSRSGNMDDSRKVFDEISVPDLVAWTTIIDGYAQHGSSQNALAMFDLMVQLG 666

Query: 430 VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
           V PD + ++++LSAC+  GLV++    FN++     +   ++HY C VDLLG+SG++ +A
Sbjct: 667 VRPDTVVLVSVLSACSRNGLVEQGFNYFNSMRTAYGVEPELQHYCCMVDLLGRSGRLAEA 726

Query: 490 CKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSES 549
              V +MPMKP   + S+L++ACR+H    +   + +++ E    ++ ++  LS + + S
Sbjct: 727 KYFVDSMPMKPDLMVWSTLLAACRVHDDTVLGRFVENKIREGN-YDSGSFATLSNILANS 785

Query: 550 GNWLGAEEVWRVMRA-KGLSKSYGFSRI 576
           G+W   EEV R+ +  KG++K  G+S +
Sbjct: 786 GDW---EEVARIRKTMKGVNKEPGWSMV 810



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 143/499 (28%), Positives = 242/499 (48%), Gaps = 14/499 (2%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           Q++C A K G   +  +   ++ + AK  +   A ++F +      + WN+ ++   +NG
Sbjct: 90  QVYCAAWKDGLSGNAYVCTGMVDLLAKSGRLRDALRVFADGDPSSAVCWNAAVSGAVRNG 149

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
               ++EMFR+M        +   +G +S C+   EL +GR +H LV+     E  VFV 
Sbjct: 150 EGGLAVEMFRDMVWGSCEPNSFTYSGALSACAAGEELSVGRAVHGLVLRRDP-EYDVFVG 208

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
           T+L+++Y+KC     A+R F +M +RN VSWT  I+G +      + + L R M R GV 
Sbjct: 209 TSLVNMYAKCGDMGAAMREFWRMPVRNVVSWTTAIAGFVQDDEPVSAMLLLREMVRNGVA 268

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
             + T T +LLACA++  +R    IHG         D  +  AL+  Y          ++
Sbjct: 269 INKYTATSILLACAQMSMVREASQIHGMVLKTEMYLDCVVKEALISTYTNFGFIELSEKV 328

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
             E   V +  IWS+ I G S    L  +++L  RM  + + PN     ++ SS     F
Sbjct: 329 FEEAGTVSNRSIWSAFISGVSNH-SLLRSVQLLRRMFHQGLRPNDKCYASVFSSVNSIEF 387

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
              G  +H   +K G    + +G+AL  MYS+C ++  S+++F EM  RD VSWT +++G
Sbjct: 388 ---GGQLHSSAIKEGFIHGILVGSALSTMYSRCDNVQDSYKVFEEMQERDGVSWTAMVAG 444

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468
           +  HG+  EA   F  M   G +PD +++ AILSACN    + + + +  + ++      
Sbjct: 445 FATHGHSVEAFLTFRNMILDGFKPDHVSLTAILSACNRPECLLKGKEVHGHTLRVYGETT 504

Query: 469 AIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
            I    C++ +  K   ++ A ++    P K    + SS++S    +G  E A  L   +
Sbjct: 505 FIND--CFISMYSKCQGVQTARRIFDATPRKDQV-MWSSMISGYATNGCGEEAISLFQLM 561

Query: 529 IEAEPENAANYTLLSMVCS 547
           +      AA+  + S +CS
Sbjct: 562 V------AASIRIDSYICS 574


>gi|242067895|ref|XP_002449224.1| hypothetical protein SORBIDRAFT_05g006590 [Sorghum bicolor]
 gi|241935067|gb|EES08212.1| hypothetical protein SORBIDRAFT_05g006590 [Sorghum bicolor]
          Length = 570

 Score =  294 bits (752), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 176/545 (32%), Positives = 291/545 (53%), Gaps = 21/545 (3%)

Query: 48  LQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQN 107
           L +H  A+  G  A+   + SLI+  A  S    A ++FD  P RD   WN+++     +
Sbjct: 33  LPIHARAIVLGVSANLAFATSLIAGAAPASL-AYARRVFDAAPVRDAYMWNTLLRAHAHS 91

Query: 108 GFY--------VRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVI--- 156
             +        V +L +++ M   G          ++  C+   +  LGR +H   +   
Sbjct: 92  HSHSQSSHSHAVDALALYKRMRAAGVAPDHYTYPIVLPACAAARQPRLGRAVHGDAVRFA 151

Query: 157 VDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM--VIRNEVSWTAMISGCIDSQNYDT 214
           +DG      FV   L+ +Y +      A  VF +     R  VSWTAM++G + +  +  
Sbjct: 152 LDGDG----FVRCTLIAMYFQEGEVADAELVFAESHGSSRTVVSWTAMVAGYVQNYFFGE 207

Query: 215 GIDLFRAMQREGVKPTRVTLTIVLLACAELRD-LRNGKAIHGYAYCCGFDFDHHLSAALM 273
            + LF  M  EGV P  +TL I  L C + ++ L  G+ +HG+    GFD +  L+ AL+
Sbjct: 208 ALALFSTMVAEGVLPNEITL-ISFLPCLQGQEWLDAGEMVHGFVIRSGFDANIPLANALI 266

Query: 274 HMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNS 333
            MY +C  ++  A  +FE   V+ +V W++++  Y Q GD+ EA+K F RM  E++  + 
Sbjct: 267 AMYGKCG-SIPMAEALFEGMAVRSLVSWNTMVAIYEQHGDVVEAIKFFHRMLTEKVGFDC 325

Query: 334 VTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNE 393
           VTL+++LS+C R   L  G  VH +    GL+ D  IGN L++MY+KCG I  + ++F+ 
Sbjct: 326 VTLVSVLSACGRSGALETGKWVHEFARSHGLDADARIGNVLVDMYAKCGEIADARKVFDC 385

Query: 394 MAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEA 453
           +  R  VSW+ +IS Y  HG  EEAL+LF  M+  GV P++ T  A+L AC H+GLV E 
Sbjct: 386 LHVRGVVSWSAMISAYANHGDSEEALKLFCLMKSEGVRPNSFTFTAVLVACGHSGLVNEG 445

Query: 454 ETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACR 513
              FN+++ + +++  +EHYAC VD+LG++G++ +A +++  M + P   +  + +  C+
Sbjct: 446 LKHFNSILSDYQMSPTLEHYACIVDMLGRAGRLVEAYEIIRGMSLCPDKCVWGAFLGGCK 505

Query: 514 IHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGF 573
           +H  LE+AE +A  L ++   +   Y L+S +  E+G    AE + R M+   L K+ G 
Sbjct: 506 LHSNLELAEFVAKDLFQSGSNDVTFYVLMSNMYFEAGMLEDAERIRRAMKEMELKKTAGH 565

Query: 574 SRIEN 578
           S +  
Sbjct: 566 SAVNQ 570



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 143/478 (29%), Positives = 228/478 (47%), Gaps = 26/478 (5%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
             L LYK+ +  +G+  +    P V+ ACA A+     G  +H  A++   D D  +  +
Sbjct: 104 DALALYKR-MRAAGVAPDHYTYPIVLPACAAAR-QPRLGRAVHGDAVRFALDGDGFVRCT 161

Query: 69  LISMYAKFSKPESAYQLFDEM--PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           LI+MY +  +   A  +F E     R  +SW +++  + QN F+  +L +F  M   G V
Sbjct: 162 LIAMYFQEGEVADAELVFAESHGSSRTVVSWTAMVAGYVQNYFFGEALALFSTMVAEG-V 220

Query: 127 LKAELLAGIISLCSQIGE-LELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
           L  E+       C Q  E L+ G  +H  VI  G F+ ++ ++ AL+ +Y KC    +A 
Sbjct: 221 LPNEITLISFLPCLQGQEWLDAGEMVHGFVIRSG-FDANIPLANALIAMYGKCGSIPMAE 279

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDT--GIDLFRAMQREGVKPTRVTLTIVLLACAE 243
            +FE M +R+ VSW  M++  I  Q+ D    I  F  M  E V    VTL  VL AC  
Sbjct: 280 ALFEGMAVRSLVSWNTMVA--IYEQHGDVVEAIKFFHRMLTEKVGFDCVTLVSVLSACGR 337

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
              L  GK +H +A   G D D  +   L+ MY +C E +  AR +F+   V+ VV WS+
Sbjct: 338 SGALETGKWVHEFARSHGLDADARIGNVLVDMYAKCGE-IADARKVFDCLHVRGVVSWSA 396

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG-----VHCY 358
           +I  Y+  GD  EA+KLF  M+ E + PNS T  A+L +C     ++ GL      +  Y
Sbjct: 397 MISAYANHGDSEEALKLFCLMKSEGVRPNSFTFTAVLVACGHSGLVNEGLKHFNSILSDY 456

Query: 359 IMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA-ARDFVSWTTLISGYGFHGYGEE 417
            M   L     I    ++M  + G +  +++I   M+   D   W   + G   H   E 
Sbjct: 457 QMSPTLEHYACI----VDMLGRAGRLVEAYEIIRGMSLCPDKCVWGAFLGGCKLHSNLEL 512

Query: 418 ALQLFLEMQESGVEPDAITVLAILSACN-HAGLVKEAETLFNNVMKEKKIALAIEHYA 474
           A  +  ++ +SG   + +T   ++S     AG++++AE +    MKE ++     H A
Sbjct: 513 AEFVAKDLFQSG--SNDVTFYVLMSNMYFEAGMLEDAERI-RRAMKEMELKKTAGHSA 567



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 104/393 (26%), Positives = 170/393 (43%), Gaps = 38/393 (9%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V  +F+ + L L+   +   G+  N   L S +  C   Q     G  +H   ++SG DA
Sbjct: 200 VQNYFFGEALALFST-MVAEGVLPNEITLISFLP-CLQGQEWLDAGEMVHGFVIRSGFDA 257

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           +  ++N+LI+MY K      A  LF+ M  R  +SWN+++  + Q+G  V +++ F  M 
Sbjct: 258 NIPLANALIAMYGKCGSIPMAEALFEGMAVRSLVSWNTMVAIYEQHGDVVEAIKFFHRML 317

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
                     L  ++S C + G LE G+ +H      G  +    +   L+D+Y+KC   
Sbjct: 318 TEKVGFDCVTLVSVLSACGRSGALETGKWVHEFARSHG-LDADARIGNVLVDMYAKCGEI 376

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             A +VF+ + +R  VSW+AMIS   +  + +  + LF  M+ EGV+P   T T VL+AC
Sbjct: 377 ADARKVFDCLHVRGVVSWSAMISAYANHGDSEEALKLFCLMKSEGVRPNSFTFTAVLVAC 436

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
                  +G    G  +      D+ +S  L H  C                        
Sbjct: 437 GH-----SGLVNEGLKHFNSILSDYQMSPTLEHYAC------------------------ 467

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
             I+    ++G L EA ++   M L    P+     A L  C   S L     V   + +
Sbjct: 468 --IVDMLGRAGRLVEAYEIIRGMSL---CPDKCVWGAFLGGCKLHSNLELAEFVAKDLFQ 522

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEM 394
           +G N DV+    + NMY + G +  + +I   M
Sbjct: 523 SGSN-DVTFYVLMSNMYFEAGMLEDAERIRRAM 554


>gi|297797117|ref|XP_002866443.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312278|gb|EFH42702.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 749

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 174/575 (30%), Positives = 299/575 (52%), Gaps = 11/575 (1%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           FY   +  Y  E+    +  +   L + I+AC    +    G  +H   +  G  +   +
Sbjct: 144 FYRDGID-YFVEILGCDIVPDEYALSAAIQACIGVDSIV-VGEMVHAQVITRGFSSRTFV 201

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
           + SL+ MYAK  +   + ++F+ +  R+ +SWN++I+ F  NG Y  +   F  M     
Sbjct: 202 NTSLLGMYAKLGRIGDSCKVFNSLENRNQVSWNAMISGFVSNGLYAEAYNSFLRMLGEEI 261

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKC----HHW 181
                    +     Q+G++E GR I+ +    G  + ++ V TAL+D+++KC      W
Sbjct: 262 RPNVACFISVSKAIGQLGDVEKGRYINRIAFEIG-MQSNIHVGTALIDMFAKCGCVTESW 320

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
            + +  F    +   + W AMISG   S + +  + LF  M +  +K    T    L + 
Sbjct: 321 SVFVSNFSGCGVN--LPWNAMISGFTISGHGEEAMLLFLRMCQNNIKRDVYTYCSTLNSI 378

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A++R L   K +HG  +  G      L  ALM  Y +C E L   R +F+  +  + + W
Sbjct: 379 ADMRSLEYVKQLHGMIWKSG-SIGVSLCNALMDAYAKCGE-LDAMRKLFDTWEESNQISW 436

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           ++++  YSQS +  +A+ +FS+MR    +PN VT   +L+SC     L +G  VH    K
Sbjct: 437 TTLVTAYSQSSEWEDALSVFSQMREMGFQPNQVTFSGVLASCASLCSLEYGQQVHSLTCK 496

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
            G   D  + + L++MY+KCGS+  + ++F  +   D +SWT +ISGY  HG  ++AL+L
Sbjct: 497 TGFARDKCVESVLIDMYAKCGSVRDAIKVFESLKDPDVISWTAMISGYAQHGMAKDALEL 556

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
           F +M+     P++ T L +L AC+H GLV E    F+ + +   +   IEHYAC VD+LG
Sbjct: 557 FRKMELVLPNPNSATFLCLLFACSHGGLVDEGLRYFHLMEERYGLVPEIEHYACVVDILG 616

Query: 482 KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTL 541
           + G++ +A K +  MP++P  ++ S+L+ ACR+HG +++A++ A +++   P++ A   L
Sbjct: 617 RVGRLTEAWKFIMKMPIEPDEKVWSTLLGACRVHGNIQLAKIAAQKVLSYNPDDFAALVL 676

Query: 542 LSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
           LS    E+GN  G   V  +M+++ + K  G S I
Sbjct: 677 LSNTYREAGNIEGGLNVRNMMKSQAMRKETGMSWI 711



 Score =  208 bits (529), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 147/496 (29%), Positives = 243/496 (48%), Gaps = 20/496 (4%)

Query: 64  VISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC 123
           V+ N L+  Y+K S   SA Q+FDE+P +   SW  ++   T+NGFY   ++ F E+  C
Sbjct: 99  VMLNQLVIAYSKCSDFGSARQVFDEIPQKSVFSWTVLMVGATENGFYRDGIDYFVEILGC 158

Query: 124 GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
             V     L+  I  C  +  + +G  +HA VI  G F    FV+T+LL +Y+K      
Sbjct: 159 DIVPDEYALSAAIQACIGVDSIVVGEMVHAQVITRG-FSSRTFVNTSLLGMYAKLGRIGD 217

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
           + +VF  +  RN+VSW AMISG + +  Y    + F  M  E ++P       V  A  +
Sbjct: 218 SCKVFNSLENRNQVSWNAMISGFVSNGLYAEAYNSFLRMLGEEIRPNVACFISVSKAIGQ 277

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCEC---TEALHPARIIFERTKVKDVVI 300
           L D+  G+ I+  A+  G   + H+  AL+ M+ +C   TE+       F    V   + 
Sbjct: 278 LGDVEKGRYINRIAFEIGMQSNIHVGTALIDMFAKCGCVTESWSVFVSNFSGCGVN--LP 335

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           W+++I G++ SG   EAM LF RM    I+ +  T  + L+S      L +   +H  I 
Sbjct: 336 WNAMISGFTISGHGEEAMLLFLRMCQNNIKRDVYTYCSTLNSIADMRSLEYVKQLHGMIW 395

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
           K+G +  VS+ NALM+ Y+KCG + +  ++F+     + +SWTTL++ Y      E+AL 
Sbjct: 396 KSG-SIGVSLCNALMDAYAKCGELDAMRKLFDTWEESNQISWTTLVTAYSQSSEWEDALS 454

Query: 421 LFLEMQESGVEPDAITVLAILSACN-----HAGLVKEAETLFNNVMKEKKIALAIEHYAC 475
           +F +M+E G +P+ +T   +L++C        G    + T      ++K +   +     
Sbjct: 455 VFSQMREMGFQPNQVTFSGVLASCASLCSLEYGQQVHSLTCKTGFARDKCVESVL----- 509

Query: 476 YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPE- 534
            +D+  K G + DA KV  ++   P     ++++S    HG  + A  L  ++    P  
Sbjct: 510 -IDMYAKCGSVRDAIKVFESLK-DPDVISWTAMISGYAQHGMAKDALELFRKMELVLPNP 567

Query: 535 NAANYTLLSMVCSESG 550
           N+A +  L   CS  G
Sbjct: 568 NSATFLCLLFACSHGG 583



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 135/300 (45%), Gaps = 9/300 (3%)

Query: 230 TRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDF-DHHLSAALMHM---YCECTEALHP 285
           +  +L  ++   A+ R L+  K+IHG+     F   +  L+  L  +   Y +C++    
Sbjct: 60  SETSLIELIRESADERCLKKAKSIHGFVI--KFQLIEKSLTVMLNQLVIAYSKCSD-FGS 116

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           AR +F+    K V  W+ ++ G +++G   + +  F  +    I P+   L A + +C  
Sbjct: 117 ARQVFDEIPQKSVFSWTVLMVGATENGFYRDGIDYFVEILGCDIVPDEYALSAAIQACIG 176

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
              +  G  VH  ++  G +    +  +L+ MY+K G I  S ++FN +  R+ VSW  +
Sbjct: 177 VDSIVVGEMVHAQVITRGFSSRTFVNTSLLGMYAKLGRIGDSCKVFNSLENRNQVSWNAM 236

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           ISG+  +G   EA   FL M    + P+    +++  A    G V++   + N +  E  
Sbjct: 237 ISGFVSNGLYAEAYNSFLRMLGEEIRPNVACFISVSKAIGQLGDVEKGRYI-NRIAFEIG 295

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKV-VSTMPMKPSTRILSSLVSACRIHGRLEVAEML 524
           +   I      +D+  K G + ++  V VS           ++++S   I G  E A +L
Sbjct: 296 MQSNIHVGTALIDMFAKCGCVTESWSVFVSNFSGCGVNLPWNAMISGFTISGHGEEAMLL 355


>gi|125605681|gb|EAZ44717.1| hypothetical protein OsJ_29347 [Oryza sativa Japonica Group]
          Length = 701

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 186/568 (32%), Positives = 311/568 (54%), Gaps = 18/568 (3%)

Query: 13  LYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISM 72
           L  +E+  +G+  N     S++ ACA     +    Q+H   LK+    D V+  +LIS 
Sbjct: 148 LLLREMVRNGVAINKYTATSILLACAQMSMVRE-ASQIHGMVLKTEMYLDCVVKEALIST 206

Query: 73  YAKFSKPESAYQLFDEMPYRDTISWNSIINCF---TQNGFYVRSLEMFREMYLCGFVLKA 129
           Y  F   E + ++F+E     T+S  SI + F     N   +RS+++ R M+  G     
Sbjct: 207 YTNFGFIELSEKVFEEA---GTVSNRSIWSAFISGVSNHSLLRSVQLLRRMFHQGLRPND 263

Query: 130 ELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
           +  A   S+ S +  +E G Q+H+  I +G F   + V +AL  +YS+C +   + +VFE
Sbjct: 264 KCYA---SVFSSVNSIEFGGQLHSSAIKEG-FIHGILVGSALSTMYSRCDNVQDSYKVFE 319

Query: 190 QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
           +M  R+ VSWTAM++G     +       FR M  +G KP  V+LT +L AC     L  
Sbjct: 320 EMQERDGVSWTAMVAGFATHGHSVEAFLTFRNMILDGFKPDHVSLTAILSACNRPECLLK 379

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
           GK +HG+     +     ++   + MY +C + +  AR IF+ T  KD V+WSS+I GY+
Sbjct: 380 GKEVHGHTLRV-YGETTFINDCFISMYSKC-QGVQTARRIFDATPRKDQVMWSSMISGYA 437

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
            +G   EA+ LF  M    I  +S    +ILS C   +   +   +H Y +KAG+  D S
Sbjct: 438 TNGCGEEAISLFQLMVAASIRIDSYICSSILSLCADIARPFYCKPLHGYAIKAGILSDQS 497

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
           + ++L+ +YS+ G++  S ++F+E++  D V+WTT+I GY  HG  + AL +F  M + G
Sbjct: 498 VSSSLVKVYSRSGNMDDSRKVFDEISVPDLVAWTTIIDGYAQHGSSQNALAMFDLMVQLG 557

Query: 430 VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
           V PD + ++++LSAC+  GLV++    FN++     +   ++HY C VDLLG+SG++ +A
Sbjct: 558 VRPDTVVLVSVLSACSRNGLVEQGFNYFNSMRTAYGVEPELQHYCCMVDLLGRSGRLAEA 617

Query: 490 CKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSES 549
              V +MPMKP   + S+L++ACR+H    +   + +++ E    ++ ++  LS + + S
Sbjct: 618 KYFVDSMPMKPDLMVWSTLLAACRVHDDTVLGRFVENKIREGN-YDSGSFATLSNILANS 676

Query: 550 GNWLGAEEVWRVMRA-KGLSKSYGFSRI 576
           G+W   EEV R+ +  KG++K  G+S +
Sbjct: 677 GDW---EEVARIRKTMKGVNKEPGWSMV 701



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 138/479 (28%), Positives = 233/479 (48%), Gaps = 14/479 (2%)

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           ++ + AK  +   A ++F +      + WN+ ++   +NG    ++EMFR+M        
Sbjct: 1   MVDLLAKSGRLRDALRVFADGDPSSAVCWNAAVSGAVRNGEGGLAVEMFRDMVWGSCEPN 60

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
           +   +G +S C+   EL +GR +H LV+     E  VFV T+L+++Y+KC     A+R F
Sbjct: 61  SFTYSGALSACAAGEELSVGRAVHGLVLRRDP-EYDVFVGTSLVNMYAKCGDMGAAMREF 119

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
            +M +RN VSWT  I+G +      + + L R M R GV   + T T +LLACA++  +R
Sbjct: 120 WRMPVRNVVSWTTAIAGFVQDDEPVSAMLLLREMVRNGVAINKYTATSILLACAQMSMVR 179

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
               IHG         D  +  AL+  Y          ++  E   V +  IWS+ I G 
Sbjct: 180 EASQIHGMVLKTEMYLDCVVKEALISTYTNFGFIELSEKVFEEAGTVSNRSIWSAFISGV 239

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
           S    L  +++L  RM  + + PN     ++ SS     F   G  +H   +K G    +
Sbjct: 240 SNH-SLLRSVQLLRRMFHQGLRPNDKCYASVFSSVNSIEF---GGQLHSSAIKEGFIHGI 295

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
            +G+AL  MYS+C ++  S+++F EM  RD VSWT +++G+  HG+  EA   F  M   
Sbjct: 296 LVGSALSTMYSRCDNVQDSYKVFEEMQERDGVSWTAMVAGFATHGHSVEAFLTFRNMILD 355

Query: 429 GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIED 488
           G +PD +++ AILSACN    + + + +  + ++       I    C++ +  K   ++ 
Sbjct: 356 GFKPDHVSLTAILSACNRPECLLKGKEVHGHTLRVYGETTFIND--CFISMYSKCQGVQT 413

Query: 489 ACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCS 547
           A ++    P K    + SS++S    +G  E A  L   ++      AA+  + S +CS
Sbjct: 414 ARRIFDATPRKDQV-MWSSMISGYATNGCGEEAISLFQLMV------AASIRIDSYICS 465



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 139/528 (26%), Positives = 246/528 (46%), Gaps = 14/528 (2%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           N+      + ACA A      G  +H   L+   + D  +  SL++MYAK     +A + 
Sbjct: 60  NSFTYSGALSACA-AGEELSVGRAVHGLVLRRDPEYDVFVGTSLVNMYAKCGDMGAAMRE 118

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL 145
           F  MP R+ +SW + I  F Q+   V ++ + REM   G  +       I+  C+Q+  +
Sbjct: 119 FWRMPVRNVVSWTTAIAGFVQDDEPVSAMLLLREMVRNGVAINKYTATSILLACAQMSMV 178

Query: 146 ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM-VIRNEVSWTAMIS 204
               QIH +V+    + L   V  AL+  Y+      ++ +VFE+   + N   W+A IS
Sbjct: 179 REASQIHGMVLKTEMY-LDCVVKEALISTYTNFGFIELSEKVFEEAGTVSNRSIWSAFIS 237

Query: 205 GCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDF 264
           G + + +    + L R M  +G++P       V    + +  +  G  +H  A   GF  
Sbjct: 238 G-VSNHSLLRSVQLLRRMFHQGLRPNDKCYASVF---SSVNSIEFGGQLHSSAIKEGFIH 293

Query: 265 DHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM 324
              + +AL  MY  C + +  +  +FE  + +D V W++++ G++  G   EA   F  M
Sbjct: 294 GILVGSALSTMYSRC-DNVQDSYKVFEEMQERDGVSWTAMVAGFATHGHSVEAFLTFRNM 352

Query: 325 RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSI 384
            L+  +P+ V+L AILS+C R   L  G  VH + ++        I +  ++MYSKC  +
Sbjct: 353 ILDGFKPDHVSLTAILSACNRPECLLKGKEVHGHTLRV-YGETTFINDCFISMYSKCQGV 411

Query: 385 TSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
            ++ +IF+    +D V W+++ISGY  +G GEEA+ LF  M  + +  D+    +ILS C
Sbjct: 412 QTARRIFDATPRKDQVMWSSMISGYATNGCGEEAISLFQLMVAASIRIDSYICSSILSLC 471

Query: 445 NHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRI 504
                    + L    +K   I       +  V +  +SG ++D+ KV   + + P    
Sbjct: 472 ADIARPFYCKPLHGYAIK-AGILSDQSVSSSLVKVYSRSGNMDDSRKVFDEISV-PDLVA 529

Query: 505 LSSLVSACRIHGRLEVAEMLAHQLIE--AEPENAANYTLLSMVCSESG 550
            ++++     HG  + A  +   +++    P+     ++LS  CS +G
Sbjct: 530 WTTIIDGYAQHGSSQNALAMFDLMVQLGVRPDTVVLVSVLS-ACSRNG 576


>gi|357457743|ref|XP_003599152.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488200|gb|AES69403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 179/575 (31%), Positives = 300/575 (52%), Gaps = 14/575 (2%)

Query: 7   YEQTL--HLYKQELHPSGLY-SNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADP 63
           +E++L    + +  HP   Y + +A+LP    AC  AQ H  +G  LH    KSG +++ 
Sbjct: 433 FEESLGHFFWMRRTHPKTDYITISALLP----ACGSAQ-HLKWGRGLHGLITKSGLESNV 487

Query: 64  VISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC 123
            + NSL+SMYA+    E A  +F  MP RD ISWNS++    ++G Y  ++ +  EM   
Sbjct: 488 CVCNSLLSMYAQAGSSEDAELVFHTMPARDLISWNSMMASHVEDGKYSHAILLLVEMLKT 547

Query: 124 GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
              +        +S C  + +L++   +HA VI   +   ++ +   L+ +Y K      
Sbjct: 548 RKAMNYVTFTTALSACYNLEKLKI---VHAFVI-HFAVHHNLIIGNTLVTMYGKFGLMDE 603

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
           A +V + M  R+ V+W A+I G  D ++ +  I  F  M+REG+    +T+  +L  C  
Sbjct: 604 AQKVCKIMPERDVVTWNALIGGHADDKDPNATIQAFNLMRREGLLSNYITIVNLLGTCMS 663

Query: 244 LRDL-RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
              L ++G  IH +    GF+ D ++ ++L+ MY +C + L+ +  IF+    K+   W+
Sbjct: 664 PDYLLKHGMPIHAHIVVAGFELDTYVQSSLITMYAQCGD-LNTSSYIFDVLANKNSSTWN 722

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
           +I    +  G   EA+K  +RMR + ++ +  +    L++    + L  G  +H +I+K 
Sbjct: 723 AIFSANAHYGPGEEALKFIARMRNDGVDLDQFSFSVALATIGNLTVLDEGQQLHSWIIKL 782

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
           G   D  + NA M+MY KCG I    +I      R   SW  LIS    HG+  +A + F
Sbjct: 783 GFELDEYVLNATMDMYGKCGEIDDVFRILPIPKIRSKRSWNILISALARHGFFRQATEAF 842

Query: 423 LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGK 482
            EM + G++PD +T +++LSAC+H GLV E    F+++  E  +  AIEH  C +DLLG+
Sbjct: 843 HEMLDLGLKPDHVTFVSLLSACSHGGLVDEGLVYFSSMTSEFGVPTAIEHCVCIIDLLGR 902

Query: 483 SGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLL 542
           SG++ +A   +  MP+ P+  +  SL++AC++HG LE+    A +L E    + + Y L 
Sbjct: 903 SGRLAEAEGFIDKMPVPPNEFVWRSLLAACKVHGNLELGRKAADRLFELNSSDDSAYVLY 962

Query: 543 SMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           S VC+ +  W   E V + M ++ L K    S I+
Sbjct: 963 SNVCASTQRWGDVENVRKQMESQSLKKKPACSWIK 997



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 127/464 (27%), Positives = 235/464 (50%), Gaps = 26/464 (5%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G  LH   +K     +   +N+L++MY+KF   + A  +FD+M  R+  SWN++I+ F +
Sbjct: 166 GKALHALCVKDVIQQNTFYTNTLVNMYSKFGSIKYAQHVFDKMYDRNDASWNNMISGFVR 225

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELG-RQIHALVIVDGSFELSV 165
            G+Y ++++ F  M+  G    + ++A +++ C + G +  G RQIH  V+  G    +V
Sbjct: 226 VGWYHKAMQFFCHMFENGVTPSSYVIASMVTACDRSGCMTEGARQIHGYVVKCGLMS-NV 284

Query: 166 FVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
           FV T+LL  Y        A ++FE++   N VSWT+++    D+ +    ++++R ++  
Sbjct: 285 FVGTSLLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCYADNGHTKEVLNIYRHLRHN 344

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDH-HLSAALMHMYCECTEALH 284
           G+  T  T+  V+  C    D   G  I G     G D     ++ +L+ M+    +++ 
Sbjct: 345 GLICTGNTMATVIRTCGMFGDKTMGYQILGDVIKSGLDTSSVSVANSLISMFGN-YDSVE 403

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
            A  +F   + +D + W+SII   + +G   E++  F  MR    + + +T+ A+L +C 
Sbjct: 404 EASRVFNNMQERDTISWNSIITASAHNGRFEESLGHFFWMRRTHPKTDYITISALLPACG 463

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
               L  G G+H  I K+GL  +V + N+L++MY++ GS   +  +F+ M ARD +SW +
Sbjct: 464 SAQHLKWGRGLHGLITKSGLESNVCVCNSLLSMYAQAGSSEDAELVFHTMPARDLISWNS 523

Query: 405 LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK 464
           +++ +   G    A+ L +EM ++    + +T    LSAC              N+ K K
Sbjct: 524 MMASHVEDGKYSHAILLLVEMLKTRKAMNYVTFTTALSAC-------------YNLEKLK 570

Query: 465 KIALAIEHYACYVDLL---------GKSGKIEDACKVVSTMPMK 499
            +   + H+A + +L+         GK G +++A KV   MP +
Sbjct: 571 IVHAFVIHFAVHHNLIIGNTLVTMYGKFGLMDEAQKVCKIMPER 614



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 109/433 (25%), Positives = 204/433 (47%), Gaps = 9/433 (2%)

Query: 12  HLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLIS 71
           H+++  + PS     + ++ S++ AC  +        Q+H   +K G  ++  +  SL+ 
Sbjct: 238 HMFENGVTPS-----SYVIASMVTACDRSGCMTEGARQIHGYVVKCGLMSNVFVGTSLLH 292

Query: 72  MYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAEL 131
            Y        A +LF+E+   + +SW S++ C+  NG     L ++R +   G +     
Sbjct: 293 FYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCYADNGHTKEVLNIYRHLRHNGLICTGNT 352

Query: 132 LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM 191
           +A +I  C   G+  +G QI   VI  G    SV V+ +L+ ++        A RVF  M
Sbjct: 353 MATVIRTCGMFGDKTMGYQILGDVIKSGLDTSSVSVANSLISMFGNYDSVEEASRVFNNM 412

Query: 192 VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGK 251
             R+ +SW ++I+    +  ++  +  F  M+R   K   +T++ +L AC   + L+ G+
Sbjct: 413 QERDTISWNSIITASAHNGRFEESLGHFFWMRRTHPKTDYITISALLPACGSAQHLKWGR 472

Query: 252 AIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQS 311
            +HG     G + +  +  +L+ MY +   +   A ++F     +D++ W+S++  + + 
Sbjct: 473 GLHGLITKSGLESNVCVCNSLLSMYAQAGSS-EDAELVFHTMPARDLISWNSMMASHVED 531

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
           G  S A+ L   M   R   N VT    LS+C     L     VH +++   ++ ++ IG
Sbjct: 532 GKYSHAILLLVEMLKTRKAMNYVTFTTALSACYNLEKLKI---VHAFVIHFAVHHNLIIG 588

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
           N L+ MY K G +  + ++   M  RD V+W  LI G+         +Q F  M+  G+ 
Sbjct: 589 NTLVTMYGKFGLMDEAQKVCKIMPERDVVTWNALIGGHADDKDPNATIQAFNLMRREGLL 648

Query: 432 PDAITVLAILSAC 444
            + IT++ +L  C
Sbjct: 649 SNYITIVNLLGTC 661


>gi|147819178|emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera]
          Length = 787

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 162/562 (28%), Positives = 281/562 (50%), Gaps = 30/562 (5%)

Query: 18  LHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFS 77
           LH  G   N  +  +++K        +  G  +H    K G +++  +  +LI  Y+   
Sbjct: 130 LHREGHELNPFVFTTILKLLVSMDCGE-LGWGIHACIFKLGHESNAFVGTALIDAYSVCG 188

Query: 78  KPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS 137
           + + A ++FD + Y+D +SW  ++ CF +N  +  +L++F +M + GF       A +  
Sbjct: 189 RVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFK 248

Query: 138 LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197
            C  +   ++G+ +H   +    +EL ++V  ALLDLY+K      A   FE++  ++ +
Sbjct: 249 ACLGLEAFDVGKSVHGCAL-KSRYELDLYVGVALLDLYTKSGDIDDARXAFEEIPKKDVI 307

Query: 198 SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
            W+ MI+    S      +++F  M++  V P + T   VL ACA +  L  G  IH + 
Sbjct: 308 PWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHV 367

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
              G   D  +S ALM +Y +C    +   +  E     DV  W+++I G+ Q GD  +A
Sbjct: 368 IKIGLHSDVFVSNALMDVYAKCGRMENSMXLFAESPHRNDVTPWNTVIVGHVQLGDGEKA 427

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
           ++LF  M   R++   VT  + L +C   + L  GL +H   +K   + D+ + NAL++M
Sbjct: 428 LRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDM 487

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           Y+KCGSI  +  +F+ M  +D VSW  +ISGY  HG                        
Sbjct: 488 YAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGL----------------------- 524

Query: 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
                AC +AGL+ + +  F +++++  I   IEHY C V LLG+ G ++ A K++  +P
Sbjct: 525 -----ACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIP 579

Query: 498 MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEE 557
            +PS  +  +L+ AC IH  +E+  + A  ++E EP++ A + LLS + + +  W     
Sbjct: 580 FQPSVMVWRALLGACVIHNDIELGRISAQHVLEMEPQDKATHVLLSNMYATAKRWDNVAS 639

Query: 558 VWRVMRAKGLSKSYGFSRIENE 579
           V + M+ KG+ K  G S IE++
Sbjct: 640 VRKNMKRKGVKKEPGLSWIESQ 661



 Score =  243 bits (619), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 160/498 (32%), Positives = 257/498 (51%), Gaps = 19/498 (3%)

Query: 31  PSVIKACAYAQTHQH--------FGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESA 82
           PS   + AYA   Q          G  LHC  LK G   D    N L++MY K      A
Sbjct: 33  PSEFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDA 92

Query: 83  YQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQI 142
            +LFDEMP R+TIS+ ++I  + ++  ++ ++E+F  ++  G  L   +   I+ L   +
Sbjct: 93  SKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSM 152

Query: 143 GELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAM 202
              ELG  IHA +   G  E + FV TAL+D YS C    +A  VF+ ++ ++ VSWT M
Sbjct: 153 DCGELGWGIHACIFKLGH-ESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGM 211

Query: 203 ISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGF 262
           ++   ++  +   + LF  M+  G KP   T   V  AC  L     GK++HG A    +
Sbjct: 212 VTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRY 271

Query: 263 DFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFS 322
           + D ++  AL+ +Y +  + +  AR  FE    KDV+ WS +I  Y+QS    EA+++F 
Sbjct: 272 ELDLYVGVALLDLYTKSGD-IDDARXAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFF 330

Query: 323 RMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCG 382
           +MR   + PN  T  ++L +C     L+ G  +HC+++K GL+ DV + NALM++Y+KCG
Sbjct: 331 QMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCG 390

Query: 383 SITSSHQIFNEMAAR-DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
            + +S  +F E   R D   W T+I G+   G GE+AL+LFL M E  V+   +T  + L
Sbjct: 391 RMENSMXLFAESPHRNDVTPWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSAL 450

Query: 442 SACNHAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPM 498
            AC     ++    + +  +K   +K I +        +D+  K G I+DA ++V  +  
Sbjct: 451 RACASLAALEPGLQIHSLTVKTTFDKDIVVT----NALIDMYAKCGSIKDA-RLVFDLMN 505

Query: 499 KPSTRILSSLVSACRIHG 516
           K      ++++S   +HG
Sbjct: 506 KQDEVSWNAMISGYSMHG 523



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 107/423 (25%), Positives = 207/423 (48%), Gaps = 23/423 (5%)

Query: 98  NSIINCFTQNGFYVRSLEMFREMYLCGFVLKAEL----LAGIISLCSQIGELELGRQIHA 153
           N+ +  F++ GF V+S ++ +E    G V  +E      A  +  C Q  E   G+ +H 
Sbjct: 5   NNFLIRFSRRGFSVQSAKLTQE--FVGHVSPSEFNSHAYANALQDCIQKDEPSRGKGLHC 62

Query: 154 LVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYD 213
            ++  G   L +F    LL++Y K      A ++F++M  RN +S+  +I G  +S  + 
Sbjct: 63  EILKRGGC-LDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFL 121

Query: 214 TGIDLFRAMQREGVKPTRVTLTIVL-----LACAELRDLRNGKAIHGYAYCCGFDFDHHL 268
             I+LF  + REG +      T +L     + C EL     G  IH   +  G + +  +
Sbjct: 122 EAIELFVRLHREGHELNPFVFTTILKLLVSMDCGEL-----GWGIHACIFKLGHESNAFV 176

Query: 269 SAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER 328
             AL+  Y  C   +  AR +F+    KD+V W+ ++  ++++    EA+KLFS+MR+  
Sbjct: 177 GTALIDAYSVCGR-VDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVG 235

Query: 329 IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSH 388
            +PN+ T  ++  +C        G  VH   +K+    D+ +G AL+++Y+K G I  + 
Sbjct: 236 FKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDAR 295

Query: 389 QIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG 448
             F E+  +D + W+ +I+ Y      +EA+++F +M+++ V P+  T  ++L AC    
Sbjct: 296 XAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATME 355

Query: 449 LVKEAETLFNNVMKEKKIALAIEHYA--CYVDLLGKSGKIEDACKVVSTMPMKPSTRILS 506
            +     +  +V+   KI L  + +     +D+  K G++E++  + +  P +      +
Sbjct: 356 GLNLGNQIHCHVI---KIGLHSDVFVSNALMDVYAKCGRMENSMXLFAESPHRNDVTPWN 412

Query: 507 SLV 509
           +++
Sbjct: 413 TVI 415


>gi|357487403|ref|XP_003613989.1| hypothetical protein MTR_5g043450 [Medicago truncatula]
 gi|355515324|gb|AES96947.1| hypothetical protein MTR_5g043450 [Medicago truncatula]
          Length = 828

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 177/576 (30%), Positives = 302/576 (52%), Gaps = 4/576 (0%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V    Y + L +++  +   G+  ++ +L SV +AC      +     +H   ++ G   
Sbjct: 179 VENGVYREGLEMFRSMI-CEGIRPDSVMLLSVAEACGKIGCLR-LAKSVHGYVMREGMVG 236

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D  +SNSLI MY++      A +LF+ +  R T  W S+I+ + QN  +  +L++F +M 
Sbjct: 237 DGSLSNSLIVMYSQCGYLCRAKRLFECIDDRSTSCWTSMISAYNQNECFEEALDVFIKMQ 296

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
                     +  +++ C+++G L+ G+ +H  V+ +      + +  AL+D YS C   
Sbjct: 297 DSEVEPNDVTMISVLNSCARLGRLKEGKSVHCFVLRNAMGVTGLDLGPALIDFYSACWKM 356

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
               ++   +   N VSW  +IS        D  +  F  M  +G+ P   +L   + A 
Sbjct: 357 SSCEKLLHSIGNENIVSWNTLISFYAREGLNDEAMAFFACMVAKGIMPDSFSLASSISAS 416

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A    ++ G+ IHG+    GF FD  +  +LM MY +C  A   A  IF + K K +V W
Sbjct: 417 ASSGSIQFGQQIHGHVMKRGF-FDEFVQNSLMDMYSKCGFA-SSAYTIFNKIKHKSIVAW 474

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           + +I G+SQ+G   EA+ LF  M   R+E N VT L+ + +C+   +L  G  +H  I+ 
Sbjct: 475 NCMICGFSQNGISVEALSLFDEMFKNRLEINKVTFLSAIQACSNLGYLDKGKWIHHKIIV 534

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
            G   D+ I  AL++MY+KCG + ++ ++F+ +  +  VSW+T+I+ +G HG    A  L
Sbjct: 535 TGNQNDLYIDTALVDMYAKCGDLQTAQKVFDSIVEKSVVSWSTMIAAHGIHGQINAATSL 594

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
           F +M  S ++P+ +T + ILSAC HAG VKE +  FN +     I   +EH+A  VDLL 
Sbjct: 595 FHKMVLSNIKPNEVTFMNILSACRHAGSVKEGKFYFNTMRDYYGIVPNVEHFASIVDLLS 654

Query: 482 KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTL 541
           ++G I  A +++ ++    +  I  +L++ CRI+GR+++ E +A +L     ++   YTL
Sbjct: 655 RAGDINGAYEIIKSIRTPVAASIWGALLNGCRIYGRMDMIEYIAEELGGISTDDTGYYTL 714

Query: 542 LSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           LS + +E GNW  + +V   M   GL K  G+S +E
Sbjct: 715 LSNIYAEGGNWYESRKVRSKMEGMGLKKVPGYSTVE 750



 Score =  251 bits (642), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 175/570 (30%), Positives = 297/570 (52%), Gaps = 22/570 (3%)

Query: 4   KHFYEQTLHLYKQELH-PSGLYSNTAIL-PSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
            H + + L L+   +   S L  N A L PSVI+A          G +LH   LKSG   
Sbjct: 77  NHLFREVLSLFNHHIQMGSKLTQNCAFLYPSVIRAVT-GVGELIVGRKLHGRILKSGFCE 135

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D VI  SL+ MY +      A ++FDEM  RD + W+SII+C+ +NG Y   LEMFR M 
Sbjct: 136 DRVIGTSLVGMYGELCFLRDAKKVFDEMCVRDLVLWSSIISCYVENGVYREGLEMFRSMI 195

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
             G    + +L  +   C +IG L L + +H  V+ +G       +S +L+ +YS+C + 
Sbjct: 196 CEGIRPDSVMLLSVAEACGKIGCLRLAKSVHGYVMREGMVGDGS-LSNSLIVMYSQCGYL 254

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             A R+FE +  R+   WT+MIS    ++ ++  +D+F  MQ   V+P  VT+  VL +C
Sbjct: 255 CRAKRLFECIDDRSTSCWTSMISAYNQNECFEEALDVFIKMQDSEVEPNDVTMISVLNSC 314

Query: 242 AELRDLRNGKAIHGYAY-----CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK 296
           A L  L+ GK++H +         G D    L  AL+  Y  C + +     +      +
Sbjct: 315 ARLGRLKEGKSVHCFVLRNAMGVTGLD----LGPALIDFYSACWK-MSSCEKLLHSIGNE 369

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVH 356
           ++V W+++I  Y++ G   EAM  F+ M  + I P+S +L + +S+      +  G  +H
Sbjct: 370 NIVSWNTLISFYAREGLNDEAMAFFACMVAKGIMPDSFSLASSISASASSGSIQFGQQIH 429

Query: 357 CYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGE 416
            ++MK G  FD  + N+LM+MYSKCG  +S++ IFN++  +  V+W  +I G+  +G   
Sbjct: 430 GHVMKRGF-FDEFVQNSLMDMYSKCGFASSAYTIFNKIKHKSIVAWNCMICGFSQNGISV 488

Query: 417 EALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVM-KEKKIALAIEHYAC 475
           EAL LF EM ++ +E + +T L+ + AC++ G + + + + + ++    +  L I+    
Sbjct: 489 EALSLFDEMFKNRLEINKVTFLSAIQACSNLGYLDKGKWIHHKIIVTGNQNDLYID--TA 546

Query: 476 YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLI--EAEP 533
            VD+  K G ++ A KV  ++ ++ S    S++++A  IHG++  A  L H+++    +P
Sbjct: 547 LVDMYAKCGDLQTAQKVFDSI-VEKSVVSWSTMIAAHGIHGQINAATSLFHKMVLSNIKP 605

Query: 534 ENAANYTLLSMVCSESGNWLGAEEVWRVMR 563
                  +LS  C  +G+    +  +  MR
Sbjct: 606 NEVTFMNILS-ACRHAGSVKEGKFYFNTMR 634



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 98/321 (30%), Positives = 172/321 (53%), Gaps = 8/321 (2%)

Query: 139 CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
           CS +  L    Q+HA ++V  S   +   ST LL+ YS+      +  VF      +   
Sbjct: 11  CSTLRRLT---QLHAHLVVT-SLHNNPLASTKLLESYSQMGSLQSSRLVFYTHPSPDSFM 66

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTI---VLLACAELRDLRNGKAIHG 255
           ++ +I   + +  +   + LF    + G K T+    +   V+ A   + +L  G+ +HG
Sbjct: 67  FSVLIKCHLWNHLFREVLSLFNHHIQMGSKLTQNCAFLYPSVIRAVTGVGELIVGRKLHG 126

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
                GF  D  +  +L+ MY E    L  A+ +F+   V+D+V+WSSII  Y ++G   
Sbjct: 127 RILKSGFCEDRVIGTSLVGMYGELC-FLRDAKKVFDEMCVRDLVLWSSIISCYVENGVYR 185

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           E +++F  M  E I P+SV LL++  +C +   L     VH Y+M+ G+  D S+ N+L+
Sbjct: 186 EGLEMFRSMICEGIRPDSVMLLSVAEACGKIGCLRLAKSVHGYVMREGMVGDGSLSNSLI 245

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
            MYS+CG +  + ++F  +  R    WT++IS Y  +   EEAL +F++MQ+S VEP+ +
Sbjct: 246 VMYSQCGYLCRAKRLFECIDDRSTSCWTSMISAYNQNECFEEALDVFIKMQDSEVEPNDV 305

Query: 436 TVLAILSACNHAGLVKEAETL 456
           T++++L++C   G +KE +++
Sbjct: 306 TMISVLNSCARLGRLKEGKSV 326


>gi|359474850|ref|XP_002277741.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
 gi|297744624|emb|CBI37886.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 182/571 (31%), Positives = 308/571 (53%), Gaps = 6/571 (1%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           F  +++ L+ Q +  S L   +  +  V+ + A        G  +H   LK G D+D  +
Sbjct: 72  FRRKSMELFSQ-MRISSLVPTSFTMVGVLVSIA-GLGDPVLGQCVHGLILKYGLDSDFRV 129

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
             +L++ YAK      +Y++F+++     +S ++I++ F  N  +  ++ +F +    G 
Sbjct: 130 VTALLNAYAKCGNVVDSYRVFEQLENPGLVSCSAIVSGFVYNELFEEAVVLFNQFRKLGM 189

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
           V  A  +  +I  C  +    L   IH +V V  S  L V V+ ++LD+YS       A 
Sbjct: 190 VPNAATVLTLIRACVALESRRLCESIHGMV-VKLSLVLDVAVNNSVLDMYSSMLDLDAAT 248

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
           RVFE M  R+ +SWT MI+  +  +     + LFR M+  G+    V +  ++ ACA L 
Sbjct: 249 RVFEGMECRDVISWTTMINLLVCLEYASDALMLFRQMRNTGICNDVVVVMNLISACAILG 308

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
           DL+ G+ IH  A  CGF  +  L+ +++ MY +C + L  +R +F++T  K +V W+++I
Sbjct: 309 DLKRGREIHTQAIVCGFGSELPLTNSIIAMYSKCGD-LDSSRTVFDQTTGKSLVSWTAMI 367

Query: 306 RGYSQSGDLSEAMKLFSRMRLER-IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
            G  Q+G   EA+KL  +MR E     +S+ L+ +LS+    + L     +HCY  ++G 
Sbjct: 368 LGCVQNGYPREALKLLIKMRGEESFYLDSIMLIGVLSASGELALLELCQQLHCYAFESGF 427

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMA-ARDFVSWTTLISGYGFHGYGEEALQLFL 423
                + N+L++ YSKCG +  ++ +F +M   RD VSW  +++GYG +G+GE A+ L+ 
Sbjct: 428 PRYRLVQNSLISAYSKCGDVEPAYNVFGQMGYIRDIVSWNAILNGYGINGHGEIAVALYH 487

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS 483
           EM++    PDA T L +LSAC+H+GLV +   +FN +++E+ I  + +H  C VDLL ++
Sbjct: 488 EMRKGRENPDAATYLCVLSACSHSGLVDDGLVIFNQMVEERTIRPSQDHCGCIVDLLARA 547

Query: 484 GKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLS 543
           G   DA + VS    K       +L+S C++HG + +AE+ A ++ E +PE      LLS
Sbjct: 548 GCFSDAREFVSRYMEKMGPNAWRALLSGCQLHGNVGLAELAARRVCELDPEEPGQVVLLS 607

Query: 544 MVCSESGNWLGAEEVWRVMRAKGLSKSYGFS 574
            V +  G +  AE +   M+ K L K+ G S
Sbjct: 608 NVYASVGRFQDAEALRASMKKKELIKNPGIS 638



 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 140/510 (27%), Positives = 262/510 (51%), Gaps = 19/510 (3%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           +H +  +    +DP+  + L+S Y K     +A +LF+E+P RD +SW+ +I+ + +NGF
Sbjct: 13  IHTSTQRYPHGSDPINYSKLLSCYLKSGDIINAGKLFEEIPKRDVVSWSIMIHGYNRNGF 72

Query: 110 YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVI---VDGSFELSVF 166
             +S+E+F +M +   V  +  + G++   + +G+  LG+ +H L++   +D  F     
Sbjct: 73  RRKSMELFSQMRISSLVPTSFTMVGVLVSIAGLGDPVLGQCVHGLILKYGLDSDFR---- 128

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           V TALL+ Y+KC + + + RVFEQ+     VS +A++SG + ++ ++  + LF   ++ G
Sbjct: 129 VVTALLNAYAKCGNVVDSYRVFEQLENPGLVSCSAIVSGFVYNELFEEAVVLFNQFRKLG 188

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           + P   T+  ++ AC  L   R  ++IHG         D  ++ +++ MY    + L  A
Sbjct: 189 MVPNAATVLTLIRACVALESRRLCESIHGMVVKLSLVLDVAVNNSVLDMYSSMLD-LDAA 247

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
             +FE  + +DV+ W+++I         S+A+ LF +MR   I  + V ++ ++S+C   
Sbjct: 248 TRVFEGMECRDVISWTTMINLLVCLEYASDALMLFRQMRNTGICNDVVVVMNLISACAIL 307

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
             L  G  +H   +  G   ++ + N+++ MYSKCG + SS  +F++   +  VSWT +I
Sbjct: 308 GDLKRGREIHTQAIVCGFGSELPLTNSIIAMYSKCGDLDSSRTVFDQTTGKSLVSWTAMI 367

Query: 407 SGYGFHGYGEEALQLFLEMQ-ESGVEPDAITVLAILSACNHAGLVKEAETL----FNNVM 461
            G   +GY  EAL+L ++M+ E     D+I ++ +LSA     L++  + L    F +  
Sbjct: 368 LGCVQNGYPREALKLLIKMRGEESFYLDSIMLIGVLSASGELALLELCQQLHCYAFESGF 427

Query: 462 KEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA 521
              ++          +    K G +E A  V   M         +++++   I+G  E+A
Sbjct: 428 PRYRLV-----QNSLISAYSKCGDVEPAYNVFGQMGYIRDIVSWNAILNGYGINGHGEIA 482

Query: 522 EMLAHQLIEA-EPENAANYTLLSMVCSESG 550
             L H++ +  E  +AA Y  +   CS SG
Sbjct: 483 VALYHEMRKGRENPDAATYLCVLSACSHSG 512


>gi|147780613|emb|CAN69119.1| hypothetical protein VITISV_031846 [Vitis vinifera]
          Length = 654

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 154/443 (34%), Positives = 252/443 (56%), Gaps = 2/443 (0%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G   H  A+K  S  D  + +SL++MY K      A ++FD MP R+++SW ++I+ +  
Sbjct: 127 GRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYAS 186

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
                 +L +FR M          +   ++S  +    +  G+QIH + + +G   + V 
Sbjct: 187 QKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSI-VS 245

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           V  AL+ +Y+KC     AL+ FE    +N ++W+AMI+G   S + D  + LF +M   G
Sbjct: 246 VGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGXAQSGDSDKALKLFSSMHLSG 305

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           ++P+  T   V+ AC++L     GK +H Y    GF+   ++  AL+ MY +C+ ++  A
Sbjct: 306 IRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCS-SIVDA 364

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
           R  F+  +  D+V+W+S+I GY Q+G+  +A+ L+ RM +E I PN +T+ ++L +C+  
Sbjct: 365 RKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSL 424

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
           + L  G  +H   +K G   +V IG+AL  MY+KCG +     +F  M ARD +SW  +I
Sbjct: 425 AALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMI 484

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
           SG   +G G+EAL+LF EMQ  G +PD +T + ILSAC+H GLV+     F  +  E  +
Sbjct: 485 SGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFRMMFDEFGM 544

Query: 467 ALAIEHYACYVDLLGKSGKIEDA 489
              +EHYAC VD+L ++GK+++A
Sbjct: 545 DPRVEHYACMVDILSRAGKLKEA 567



 Score =  225 bits (573), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 153/507 (30%), Positives = 251/507 (49%), Gaps = 8/507 (1%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G  LH   +KS S     I+NSL+++YAK  +   A  +F+ +  +D +SWN IIN ++Q
Sbjct: 25  GKALHAQIIKSSSSC-VYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIINGYSQ 83

Query: 107 NGFYVRS--LEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELS 164
           +G    S  +E+F+ M        A   AG+ +  S + +   GR  HA+ I   S    
Sbjct: 84  HGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDSCR-D 142

Query: 165 VFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR 224
           VFV ++L+++Y K      A +VF+ M  RN VSW  MISG    +     + LFR M+R
Sbjct: 143 VFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRR 202

Query: 225 EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
           E         T VL A      + NGK IH  A   G      +  AL+ MY +C  +L 
Sbjct: 203 EEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCG-SLD 261

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
            A   FE +  K+ + WS++I G +QSGD  +A+KLFS M L  I P+  T + ++++C+
Sbjct: 262 DALQTFETSSDKNSITWSAMITGXAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACS 321

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
                  G  VH Y++K G    + +  AL++MY+KC SI  + + F+ +   D V WT+
Sbjct: 322 DLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTS 381

Query: 405 LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK 464
           +I GY  +G  E+AL L+  M+  G+ P+ +T+ ++L AC+    +++ + +    +K  
Sbjct: 382 MIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVK-Y 440

Query: 465 KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG-RLEVAEM 523
              L +   +    +  K G ++D   V   MP +      ++++S    +G   E  E+
Sbjct: 441 GFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVIS-WNAMISGLSQNGCGKEALEL 499

Query: 524 LAHQLIEAEPENAANYTLLSMVCSESG 550
                +E    +   +  +   CS  G
Sbjct: 500 FEEMQLEGTKPDYVTFVNILSACSHMG 526



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 86/280 (30%), Positives = 135/280 (48%), Gaps = 15/280 (5%)

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGY-----AYCCGFDFDHHLSAALMHMYCECTEAL 283
           P+  +    LL     R L+ GKA+H       + C       +++ +L+++Y +C + L
Sbjct: 4   PSNRSFFTALLQYTHNRSLQKGKALHAQIIKSSSSCV------YIANSLVNLYAKC-QRL 56

Query: 284 HPARIIFERTKVKDVVIWSSIIRGYSQSGDL--SEAMKLFSRMRLERIEPNSVTLLAILS 341
             A+ +FER + KDVV W+ II GYSQ G    S  M+LF RMR E   PN+ T   + +
Sbjct: 57  REAKFVFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFT 116

Query: 342 SCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS 401
           + +     + G   H   +K     DV +G++LMNMY K G    + ++F+ M  R+ VS
Sbjct: 117 AASTLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVS 176

Query: 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVM 461
           W T+ISGY       EAL LF  M+      +     ++LSA     LV   + +    +
Sbjct: 177 WATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAV 236

Query: 462 KEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPS 501
           K   +++     A  V +  K G ++DA +   T   K S
Sbjct: 237 KNGLLSIVSVGNA-LVTMYAKCGSLDDALQTFETSSDKNS 275



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/141 (34%), Positives = 73/141 (51%), Gaps = 2/141 (1%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E  L LY + +   G+  N   + SV+KAC+     +  G Q+H   +K G   +  I +
Sbjct: 393 EDALSLYGR-MEMEGILPNELTMASVLKACSSLAALEQ-GKQIHARTVKYGFGLEVPIGS 450

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +L +MYAK    +    +F  MP RD ISWN++I+  +QNG    +LE+F EM L G   
Sbjct: 451 ALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELFEEMQLEGTKP 510

Query: 128 KAELLAGIISLCSQIGELELG 148
                  I+S CS +G +E G
Sbjct: 511 DYVTFVNILSACSHMGLVERG 531


>gi|302762633|ref|XP_002964738.1| hypothetical protein SELMODRAFT_583 [Selaginella moellendorffii]
 gi|300166971|gb|EFJ33576.1| hypothetical protein SELMODRAFT_583 [Selaginella moellendorffii]
          Length = 644

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 170/561 (30%), Positives = 284/561 (50%), Gaps = 36/561 (6%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           Q++   G   +   L ++ +AC   +  +  G ++H        ++D V+ +SLI+MY K
Sbjct: 88  QQMQLEGNSPDRITLVTIFEACGNPENLED-GKKIHAYL---SCNSDVVLGSSLITMYGK 143

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
                 A  +F  M   +T++WNS++  F Q+     ++E++ EM  CGF+        +
Sbjct: 144 CGSLSEACLMFQSMEEWNTVAWNSLMGAFVQHDRVEAAMELYWEMLQCGFLPSRPTFLTV 203

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           ++  S +  L  G+ +H   +V+   E  V V TAL+++Y KC   + A+ VF++M   +
Sbjct: 204 LAAISSLESLRHGKLVHD-TLVEAGHEDDVVVQTALVNMYGKCGSVVEAVEVFDRMPRHD 262

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
            + W+A+IS  ++   Y+  + LFR MQ EG +P  VTL  VL AC   + L  GK IH 
Sbjct: 263 VILWSAVISAHVNCAEYEESLRLFRKMQLEGNRPNNVTLVSVLSACEGPQALETGKGIHE 322

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTE-------------------------------ALH 284
                G++ D  +  A++ MY +C                                 +  
Sbjct: 323 CVVEAGYEGDLIVGNAIVSMYGKCGSLEDAWDVFHRVPRRNGVPIGNALISMYGRCGSFG 382

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
            AR +F+    +D V W++++    Q     ++++LF +M  E   P+ VT+L +L+ C 
Sbjct: 383 KARDLFDSMAERDAVTWNTMMSVSEQLEHGRDSIQLFRQMLQEGTPPDKVTILTVLNVCA 442

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
               L  G  +  ++    L+ +  IGNA++NMY+KCGS   + +IF+ M  RD VSW  
Sbjct: 443 SLPALQEGKAICAWLDHTPLSANQMIGNAILNMYAKCGSRDEARRIFSVMQGRDAVSWNA 502

Query: 405 LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK 464
           LI  YG +  G  A Q+F  MQ  G  PDA+T   ILS C+H GL+ EA   F  + ++ 
Sbjct: 503 LIGAYGSYSRGRYAFQIFQAMQLEGSTPDAVTFTTILSVCSHGGLLGEAVKWFRWMREDY 562

Query: 465 KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEML 524
            +     HY C VDLLG+ G++ +A +V   MP      + ++L+SAC++HG  +  +  
Sbjct: 563 YVEAETGHYGCIVDLLGRLGRVPEAEEVAEKMPAGTDPIVWTTLLSACQVHGETQRGKRA 622

Query: 525 AHQLIEAEPENAANYTLLSMV 545
           A +L+E +PE  + Y +LS +
Sbjct: 623 AERLVELDPEVTSAYVVLSTI 643



 Score =  225 bits (573), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 154/559 (27%), Positives = 268/559 (47%), Gaps = 55/559 (9%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFD---EMPYRDTISWNSIINC 103
           G Q+H +  +S +  DPV+ N LI MY K      A Q+F    E    + ++W ++I  
Sbjct: 14  GRQIHASIARSSAPQDPVVGNWLIQMYLKCGSLIDASQVFYQLLETSVVNLVAWTALIAA 73

Query: 104 FTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFEL 163
           + +NG    ++ +F++M L G       L  I   C     LE G++IHA +    S   
Sbjct: 74  YARNGQTKLAIRLFQQMQLEGNSPDRITLVTIFEACGNPENLEDGKKIHAYL----SCNS 129

Query: 164 SVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQ 223
            V + ++L+ +Y KC     A  +F+ M   N V+W +++   +     +  ++L+  M 
Sbjct: 130 DVVLGSSLITMYGKCGSLSEACLMFQSMEEWNTVAWNSLMGAFVQHDRVEAAMELYWEML 189

Query: 224 REGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEAL 283
           + G  P+R T   VL A + L  LR+GK +H      G + D  +  AL++MY +C   +
Sbjct: 190 QCGFLPSRPTFLTVLAAISSLESLRHGKLVHDTLVEAGHEDDVVVQTALVNMYGKCGSVV 249

Query: 284 HPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC 343
                +F+R    DV++WS++I  +    +  E+++LF +M+LE   PN+VTL+++LS+C
Sbjct: 250 EAVE-VFDRMPRHDVILWSAVISAHVNCAEYEESLRLFRKMQLEGNRPNNVTLVSVLSAC 308

Query: 344 TRQSFLSHGLGVHCYIMKAGLNFD--------------------------------VSIG 371
                L  G G+H  +++AG   D                                V IG
Sbjct: 309 EGPQALETGKGIHECVVEAGYEGDLIVGNAIVSMYGKCGSLEDAWDVFHRVPRRNGVPIG 368

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
           NAL++MY +CGS   +  +F+ MA RD V+W T++S      +G +++QLF +M + G  
Sbjct: 369 NALISMYGRCGSFGKARDLFDSMAERDAVTWNTMMSVSEQLEHGRDSIQLFRQMLQEGTP 428

Query: 432 PDAITVLAILSACNHAGLVKEAETL-----FNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
           PD +T+L +L+ C     ++E + +        +   + I  AI      +++  K G  
Sbjct: 429 PDKVTILTVLNVCASLPALQEGKAICAWLDHTPLSANQMIGNAI------LNMYAKCGSR 482

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA-EMLAHQLIEAEPENAANYTLLSMV 545
           ++A ++ S M  + +    ++L+ A   + R   A ++     +E    +A  +T +  V
Sbjct: 483 DEARRIFSVMQGRDAVS-WNALIGAYGSYSRGRYAFQIFQAMQLEGSTPDAVTFTTILSV 541

Query: 546 CSESGNWLGAEEVW-RVMR 563
           CS  G  LG    W R MR
Sbjct: 542 CSH-GGLLGEAVKWFRWMR 559



 Score =  184 bits (468), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 122/386 (31%), Positives = 203/386 (52%), Gaps = 12/386 (3%)

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV-- 192
           ++  CS+  +L  GRQIHA  I   S      V   L+ +Y KC   + A +VF Q++  
Sbjct: 1   LLRQCSRSKDLARGRQIHA-SIARSSAPQDPVVGNWLIQMYLKCGSLIDASQVFYQLLET 59

Query: 193 -IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGK 251
            + N V+WTA+I+    +      I LF+ MQ EG  P R+TL  +  AC    +L +GK
Sbjct: 60  SVVNLVAWTALIAAYARNGQTKLAIRLFQQMQLEGNSPDRITLVTIFEACGNPENLEDGK 119

Query: 252 AIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQS 311
            IH Y  C   + D  L ++L+ MY +C  +L  A ++F+  +  + V W+S++  + Q 
Sbjct: 120 KIHAYLSC---NSDVVLGSSLITMYGKCG-SLSEACLMFQSMEEWNTVAWNSLMGAFVQH 175

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
             +  AM+L+  M      P+  T L +L++ +    L HG  VH  +++AG   DV + 
Sbjct: 176 DRVEAAMELYWEMLQCGFLPSRPTFLTVLAAISSLESLRHGKLVHDTLVEAGHEDDVVVQ 235

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
            AL+NMY KCGS+  + ++F+ M   D + W+ +IS +      EE+L+LF +MQ  G  
Sbjct: 236 TALVNMYGKCGSVVEAVEVFDRMPRHDVILWSAVISAHVNCAEYEESLRLFRKMQLEGNR 295

Query: 432 PDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACK 491
           P+ +T++++LSAC     ++  + +   V++       I   A  V + GK G +EDA  
Sbjct: 296 PNNVTLVSVLSACEGPQALETGKGIHECVVEAGYEGDLIVGNA-IVSMYGKCGSLEDAWD 354

Query: 492 VVSTMPMKPSTRILSSLVSACRIHGR 517
           V   +P +    I ++L+S   ++GR
Sbjct: 355 VFHRVPRRNGVPIGNALIS---MYGR 377


>gi|224115126|ref|XP_002332220.1| predicted protein [Populus trichocarpa]
 gi|222831877|gb|EEE70354.1| predicted protein [Populus trichocarpa]
          Length = 673

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 162/540 (30%), Positives = 299/540 (55%), Gaps = 17/540 (3%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           +H   +K+G+  +  + + L+++YAK     +A ++FD +P R+ + W +++  + QN  
Sbjct: 2   VHAHVIKTGTHEEFFVMSFLVNVYAKCGVMVNARKVFDNLPRRNVVVWTTLMTGYVQNSQ 61

Query: 110 YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELS--VFV 167
              ++E+F +M   G       L+  ++ CS +  + LG+Q HA +I    + +S    +
Sbjct: 62  PEVAVEVFGDMLESGSFPSNFTLSIALNACSSLESITLGKQFHAFII---KYRISHDSSI 118

Query: 168 STALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV 227
             AL  LYSK      +++ F +   ++ +SWT +IS C D+     G+ LF  M  E V
Sbjct: 119 GNALCSLYSKFGSLDSSVKAFRETGEKDVISWTTIISACGDNGRAGMGLRLFIEMLFENV 178

Query: 228 KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPAR 287
           +P   TLT VL  C+ ++    G  +H  +   G + +  ++ +L+++Y +C   +  A+
Sbjct: 179 EPNDFTLTSVLSLCSTIQSSDLGMQVHSLSTKLGHESNLRITNSLVYLYLKCG-CIDEAK 237

Query: 288 IIFERTKVKDVVIWSSIIRGYSQSGDL-----------SEAMKLFSRMRLERIEPNSVTL 336
            +F R + K+++ W+++I G++Q+ DL           +EA+ ++ ++     +P+  TL
Sbjct: 238 NLFNRMEYKNLITWNAMIAGHAQAMDLAKDNFSAQQTGTEALGMYLKLNRSGRKPDLFTL 297

Query: 337 LAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA 396
            +IL+ C+R + L  G  +H   +K+G   DV +G AL++MY KCGSI  + + F +M+ 
Sbjct: 298 SSILTVCSRLAALEQGEQIHAQTIKSGFLSDVVVGTALVDMYDKCGSIERARKAFLDMST 357

Query: 397 RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETL 456
           R  +SWT++I+ +  HG  + ALQLF +M+ +G  P+ IT + +L+AC+HAG+V EA   
Sbjct: 358 RTLISWTSMITSFARHGQSQHALQLFEDMRLAGFRPNQITFVGVLAACSHAGMVDEALEY 417

Query: 457 FNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG 516
           F  + KE KI   ++HY C VD+  + G++++A  V+  M ++P+  I   L++ CR HG
Sbjct: 418 FEIMQKEYKIKPVMDHYGCLVDMFVRLGRLDEAFDVIKRMDVEPNEFIWLLLIAGCRNHG 477

Query: 517 RLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
             E+    A QL++ +P +   Y +L  +   +  W     V R+M+ + + K   +SRI
Sbjct: 478 NEELGFYAAEQLLKLKPRSTETYVVLLNMYISAERWEDVSMVRRLMKEEKVGKLKDWSRI 537



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 128/468 (27%), Positives = 216/468 (46%), Gaps = 26/468 (5%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           ++  SG + +   L   + AC+  ++    G Q H   +K     D  I N+L S+Y+KF
Sbjct: 71  DMLESGSFPSNFTLSIALNACSSLESIT-LGKQFHAFIIKYRISHDSSIGNALCSLYSKF 129

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
              +S+ + F E   +D ISW +II+    NG     L +F EM           L  ++
Sbjct: 130 GSLDSSVKAFRETGEKDVISWTTIISACGDNGRAGMGLRLFIEMLFENVEPNDFTLTSVL 189

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
           SLCS I   +LG Q+H+L    G  E ++ ++ +L+ LY KC     A  +F +M  +N 
Sbjct: 190 SLCSTIQSSDLGMQVHSLSTKLGH-ESNLRITNSLVYLYLKCGCIDEAKNLFNRMEYKNL 248

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQ-------------REGVKPTRVTLTIVLLACAE 243
           ++W AMI+G   +Q  D   D F A Q             R G KP   TL+ +L  C+ 
Sbjct: 249 ITWNAMIAG--HAQAMDLAKDNFSAQQTGTEALGMYLKLNRSGRKPDLFTLSSILTVCSR 306

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
           L  L  G+ IH      GF  D  +  AL+ MY +C  ++  AR  F     + ++ W+S
Sbjct: 307 LAALEQGEQIHAQTIKSGFLSDVVVGTALVDMYDKCG-SIERARKAFLDMSTRTLISWTS 365

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           +I  +++ G    A++LF  MRL    PN +T + +L++C+    +   L  +  IM+  
Sbjct: 366 MITSFARHGQSQHALQLFEDMRLAGFRPNQITFVGVLAACSHAGMVDEALE-YFEIMQKE 424

Query: 364 LNFDVSIGN--ALMNMYSKCGSITSSHQIFNEM--AARDFVSWTTLISGYGFHGYGEEAL 419
                 + +   L++M+ + G +  +  +   M     +F+ W  LI+G   H  G E L
Sbjct: 425 YKIKPVMDHYGCLVDMFVRLGRLDEAFDVIKRMDVEPNEFI-WLLLIAGCRNH--GNEEL 481

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIA 467
             +   Q   ++P +     +L     +    E  ++   +MKE+K+ 
Sbjct: 482 GFYAAEQLLKLKPRSTETYVVLLNMYISAERWEDVSMVRRLMKEEKVG 529


>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
          Length = 599

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 164/502 (32%), Positives = 281/502 (55%), Gaps = 19/502 (3%)

Query: 93  DTISWNSIINCFTQNGFYVRSLEMFREMYLC-GFVLKAELLAGIISLCSQIGELELGRQI 151
           +T SWN  I  F  +     ++ +++ +  C G          +   C+++  + +G +I
Sbjct: 42  NTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEI 101

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQN 211
              V+  G F+  +FVS A++ L   C     A ++F++  +R+ VSW +MI+G +    
Sbjct: 102 LGHVLHLG-FDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGW 160

Query: 212 YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAA 271
               ++ +R M+ EG+KP  VT+  V+ +CA+L DL  G+  H Y    G      L+ A
Sbjct: 161 AYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANA 220

Query: 272 LMHMYCECTEALHPAR----------------IIFERTKVKDVVIWSSIIRGYSQSGDLS 315
           LM MY +C   L  AR                ++F+    KDVV W+++I GY  +    
Sbjct: 221 LMDMYMKCGN-LESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGK 279

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           EA+ LF+ M+   I P+ VT+++ LS+C++   L  G+ +H YI K  L+ +V++G AL+
Sbjct: 280 EALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALI 339

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           +MY+KCG IT + Q+F E+  R+ ++WT +ISG   HG    A+  F EM ++ V PD +
Sbjct: 340 DMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEV 399

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           T L +LSAC H GLV+E    F+ +  +  ++  ++HY+C VDLLG++G +E+A +++ +
Sbjct: 400 TFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKS 459

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGA 555
           MP++    +  +L  ACRIHG + + E  A +L++ +P ++  Y LL+ +  E+  W  A
Sbjct: 460 MPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEA 519

Query: 556 EEVWRVMRAKGLSKSYGFSRIE 577
            +  ++MR +G+ K+ G S IE
Sbjct: 520 GKXRKLMRQRGVEKTPGCSSIE 541



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 123/444 (27%), Positives = 210/444 (47%), Gaps = 32/444 (7%)

Query: 13  LYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISM 72
           LYK+ L   G   +    P + KACA     +  G ++    L  G D+D  +SN++I +
Sbjct: 65  LYKRVLQCDGTKPDNYTYPLLFKACARLSLIR-MGSEILGHVLHLGFDSDIFVSNAVIHL 123

Query: 73  YAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELL 132
                  + A ++FD+   RD +SWNS+IN + + G+   +L  +REM + G       +
Sbjct: 124 LVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTM 183

Query: 133 AGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV 192
            G++S C+Q+ +L+LGR+ H  +  +G  +L+V ++ AL+D+Y KC +   A ++F+ M 
Sbjct: 184 IGVVSSCAQLEDLDLGRESHCYIEENG-LKLTVPLANALMDMYMKCGNLESARKLFDSMT 242

Query: 193 IRNEVSWT----------------AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTI 236
            +  VSWT                AMI G + +      + LF  MQ   + P  VT+  
Sbjct: 243 NKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVS 302

Query: 237 VLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK 296
            L AC++L  L  G  IH Y        +  L  AL+ MY +C + +  A  +F+    +
Sbjct: 303 CLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGK-ITKAIQVFQELPGR 361

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVH 356
           + + W++II G +  G+   A+  FS M    + P+ VT L +LS+C     +  G    
Sbjct: 362 NSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEG---R 418

Query: 357 CYIMKAGLNFDVSIG----NALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGF 411
            Y  +    F++S      + ++++  + G +  + ++   M    D V W  L      
Sbjct: 419 KYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRI 478

Query: 412 HG---YGEEALQLFLEMQ--ESGV 430
           HG    GE A    L+M   +SG+
Sbjct: 479 HGNVLMGERAASKLLQMDPHDSGI 502


>gi|449447569|ref|XP_004141540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Cucumis sativus]
 gi|449481506|ref|XP_004156203.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Cucumis sativus]
          Length = 712

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 173/570 (30%), Positives = 294/570 (51%), Gaps = 44/570 (7%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G QLH   + SG   D  + + L+  Y+       A+ L +        SWN +I  + +
Sbjct: 98  GKQLHGHIISSGLVEDSFLVSKLVMFYSSLEFLPEAHTLVETSNLFRPCSWNILITSYVK 157

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           +  Y  ++  +++M   G          I+  C +   L+ G ++H   I   S   S+F
Sbjct: 158 HKLYEAAILAYKQMVSKGVRPDNFTFPSILKACGETQNLKFGLEVHK-SINSWSTPWSLF 216

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMIS---------------------- 204
           V  AL+ +Y +C     A  +F+ M+ R+ VSW +MIS                      
Sbjct: 217 VHNALISMYGRCGEVDTARNLFDNMLERDAVSWNSMISCYSSRGMWREAFELFESMQSKC 276

Query: 205 -------------GCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGK 251
                        GC+   N+   + L   M+  G+    V + I L AC+ +  +R GK
Sbjct: 277 LEINVVTWNIIAGGCLRVGNFTQALKLLSQMRNFGIHLDDVAMIIGLGACSHIGAIRLGK 336

Query: 252 AIHGYAYCCGFDFDHHLSA---ALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
            IHG+       + H LS    AL+ MY  C +  H A ++F     K  + W+S++ G 
Sbjct: 337 EIHGFTI---RHYHHMLSTVQNALVTMYARCKDIRH-AYMLFRLNDDKSRITWNSMLSGL 392

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK-AGLNFD 367
           +  G + EA+ LF  + L  +EP+ VT  +IL  C R + L HG   HCYI K       
Sbjct: 393 THLGRVEEALCLFRELLLFGVEPDYVTFASILPLCARVADLQHGREFHCYITKHRDFRDH 452

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
           + + NAL++MY++ G ++ + +IF  ++ +D V++T+LI+GYG  G G +A++LF EM+ 
Sbjct: 453 LLLWNALVDMYARAGKVSEAKRIFYSLSKKDEVTYTSLIAGYGMQGEGGKAVRLFEEMKR 512

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487
             ++PD IT++A+LSAC+H+GLV +AE LF  +     ++  +EHYAC  DL G+ G + 
Sbjct: 513 FQIKPDHITMIAVLSACSHSGLVNQAELLFAEMQSVHGLSPRLEHYACMADLFGRVGLLN 572

Query: 488 DACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCS 547
            A ++++ MP +P++ I ++L+ AC IHG +++ E  A +L+E  PE++  Y L++ + +
Sbjct: 573 KAKEIITRMPYRPTSAIWATLIGACCIHGNMDIGEWAAEKLLEMRPEHSGYYVLIANMYA 632

Query: 548 ESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +G+W    E+  +MR  G++K  G S ++
Sbjct: 633 AAGSWSKLAEIRTLMRDSGVAKIPGCSWVD 662



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 131/467 (28%), Positives = 221/467 (47%), Gaps = 47/467 (10%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V    YE  +  YKQ +   G+  +    PS++KAC   Q  + FGL++H +     +  
Sbjct: 156 VKHKLYEAAILAYKQMV-SKGVRPDNFTFPSILKACGETQNLK-FGLEVHKSINSWSTPW 213

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM- 120
              + N+LISMY +  + ++A  LFD M  RD +SWNS+I+C++  G +  + E+F  M 
Sbjct: 214 SLFVHNALISMYGRCGEVDTARNLFDNMLERDAVSWNSMISCYSSRGMWREAFELFESMQ 273

Query: 121 --------------------------------YLCGFVLKAELLAGIISL--CSQIGELE 146
                                            +  F +  + +A II L  CS IG + 
Sbjct: 274 SKCLEINVVTWNIIAGGCLRVGNFTQALKLLSQMRNFGIHLDDVAMIIGLGACSHIGAIR 333

Query: 147 LGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGC 206
           LG++IH   I      LS  V  AL+ +Y++C     A  +F     ++ ++W +M+SG 
Sbjct: 334 LGKEIHGFTIRHYHHMLST-VQNALVTMYARCKDIRHAYMLFRLNDDKSRITWNSMLSGL 392

Query: 207 IDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDH 266
                 +  + LFR +   GV+P  VT   +L  CA + DL++G+  H Y      DF  
Sbjct: 393 THLGRVEEALCLFRELLLFGVEPDYVTFASILPLCARVADLQHGREFHCYI-TKHRDFRD 451

Query: 267 H--LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM 324
           H  L  AL+ MY    +     RI +  +K KD V ++S+I GY   G+  +A++LF  M
Sbjct: 452 HLLLWNALVDMYARAGKVSEAKRIFYSLSK-KDEVTYTSLIAGYGMQGEGGKAVRLFEEM 510

Query: 325 RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA-GLNFDVSIGNALMNMYSKCGS 383
           +  +I+P+ +T++A+LS+C+    ++    +   +    GL+  +     + +++ + G 
Sbjct: 511 KRFQIKPDHITMIAVLSACSHSGLVNQAELLFAEMQSVHGLSPRLEHYACMADLFGRVGL 570

Query: 384 ITSSHQIFNEMAARDFVS-WTTLISGYGFHG---YGEEALQLFLEMQ 426
           +  + +I   M  R   + W TLI     HG    GE A +  LEM+
Sbjct: 571 LNKAKEIITRMPYRPTSAIWATLIGACCIHGNMDIGEWAAEKLLEMR 617



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 121/489 (24%), Positives = 211/489 (43%), Gaps = 46/489 (9%)

Query: 104 FTQNGFYVRSLEMF-----REMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVD 158
           F  +G   +S E F     R  Y   F L  + ++ ++  C++   L  G+Q+H  +I  
Sbjct: 49  FASHGQLSKSFEAFSLIQLRTSYNDSFDLILQSISILLVSCTKSSSLPPGKQLHGHIISS 108

Query: 159 GSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDL 218
           G  E S  VS  L+  YS       A  + E   +    SW  +I+  +  + Y+  I  
Sbjct: 109 GLVEDSFLVSK-LVMFYSSLEFLPEAHTLVETSNLFRPCSWNILITSYVKHKLYEAAILA 167

Query: 219 FRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCE 278
           ++ M  +GV+P   T   +L AC E ++L+ G  +H         +   +  AL+ MY  
Sbjct: 168 YKQMVSKGVRPDNFTFPSILKACGETQNLKFGLEVHKSINSWSTPWSLFVHNALISMYGR 227

Query: 279 CTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLA 338
           C E +  AR +F+    +D V W+S+I  YS  G   EA +LF  M+ + +E N VT   
Sbjct: 228 CGE-VDTARNLFDNMLERDAVSWNSMISCYSSRGMWREAFELFESMQSKCLEINVVTWNI 286

Query: 339 ILSSCTRQSFLSHGLGVHCYIMKAGLNFD------------------------------- 367
           I   C R    +  L +   +   G++ D                               
Sbjct: 287 IAGGCLRVGNFTQALKLLSQMRNFGIHLDDVAMIIGLGACSHIGAIRLGKEIHGFTIRHY 346

Query: 368 ----VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
                ++ NAL+ MY++C  I  ++ +F     +  ++W +++SG    G  EEAL LF 
Sbjct: 347 HHMLSTVQNALVTMYARCKDIRHAYMLFRLNDDKSRITWNSMLSGLTHLGRVEEALCLFR 406

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS 483
           E+   GVEPD +T  +IL  C     ++        + K +     +  +   VD+  ++
Sbjct: 407 ELLLFGVEPDYVTFASILPLCARVADLQHGREFHCYITKHRDFRDHLLLWNALVDMYARA 466

Query: 484 GKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL--IEAEPENAANYTL 541
           GK+ +A ++  ++  K      +SL++   + G    A  L  ++   + +P++     +
Sbjct: 467 GKVSEAKRIFYSLSKKDEV-TYTSLIAGYGMQGEGGKAVRLFEEMKRFQIKPDHITMIAV 525

Query: 542 LSMVCSESG 550
           LS  CS SG
Sbjct: 526 LS-ACSHSG 533


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 167/505 (33%), Positives = 276/505 (54%), Gaps = 26/505 (5%)

Query: 96  SWNSIINCFTQNGFYVRSLEMFREMYLC---GFVLKAELLAGIISLCSQIGELELGRQIH 152
           SW   I      G ++ ++ +F +M         + A L A + S C+ +G   L   +H
Sbjct: 14  SWAYQIRMAASQGQFLHAISLFLQMRASVAPRSSVPASLPAALKS-CAGLGLCTLAASLH 72

Query: 153 ALVIVDGSFELSVFVSTALLDLYSKC---HH-----------------WLIALRVFEQMV 192
           AL I  GSF    F + ALL+L  K    HH                 +    +VF++M+
Sbjct: 73  ALAIRSGSFA-DRFTANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFDEML 131

Query: 193 IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKA 252
            R+ VSW  +I GC + + +   + + R M R+G  P   TL+ VL   AE  D++ G  
Sbjct: 132 ERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGMV 191

Query: 253 IHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSG 312
           +HGYA   GFD D  + ++L+ MY  CT+  +  ++ F+     D V+W+S++ GY+Q+G
Sbjct: 192 VHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKV-FDSFSDCDAVLWNSMLAGYAQNG 250

Query: 313 DLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN 372
            + EA+ +F RM    + P  VT  +++ +    S L  G  +H Y+++A  N ++ I +
Sbjct: 251 SVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISS 310

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
           +L++MY KCG++  + ++FN + + D VSWT +I GY  HG   EA  LF  M+   V+P
Sbjct: 311 SLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNVKP 370

Query: 433 DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKV 492
           + IT LA+L+AC+HAGLV      FN++  +     ++EH A   D LG++G +++A   
Sbjct: 371 NHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEAYNF 430

Query: 493 VSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNW 552
           +S M +KP++ + S+L+ ACR+H    +AE +A ++ E EP++  ++ +LS + S SG W
Sbjct: 431 ISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPKSMGSHVILSNMYSASGRW 490

Query: 553 LGAEEVWRVMRAKGLSKSYGFSRIE 577
             A ++ + MR KG+ K    S IE
Sbjct: 491 NEAAQLRKSMRIKGMKKEPACSWIE 515



 Score =  187 bits (476), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 129/449 (28%), Positives = 227/449 (50%), Gaps = 45/449 (10%)

Query: 25  SNTAILPSVIKACAYAQTHQHFGL-----QLHCTALKSGSDADPVISNSLISMYAK---F 76
           S  A LP+ +K+CA        GL      LH  A++SGS AD   +N+L+++  K   F
Sbjct: 47  SVPASLPAALKSCA------GLGLCTLAASLHALAIRSGSFADRFTANALLNLCIKLPGF 100

Query: 77  SKP-----------------ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFRE 119
             P                 ES  ++FDEM  RD +SWN++I    ++  +  +L M RE
Sbjct: 101 HHPFGTNGPSGEGGLESAAYESMRKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVRE 160

Query: 120 MYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH 179
           M+  GF+     L+ ++ + ++  +++ G  +H   I +G F+  VFV ++L+D+Y+ C 
Sbjct: 161 MWRDGFMPDTFTLSTVLPIFAECADIKRGMVVHGYAIKNG-FDNDVFVGSSLIDMYANCT 219

Query: 180 HWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLL 239
               +++VF+     + V W +M++G   + + +  + +FR M + GV+P  VT + ++ 
Sbjct: 220 QMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIP 279

Query: 240 ACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVV 299
           A   L  LR GK +H Y     F+ +  +S++L+ MYC+C   +  AR +F   +  D+V
Sbjct: 280 AFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGN-VDIARRVFNGIQSPDIV 338

Query: 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
            W+++I GY+  G  +EA  LF RM L  ++PN +T LA+L++C+    + +G   +   
Sbjct: 339 SWTAMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWK-YFNS 397

Query: 360 MKAGLNFDVSIGN--ALMNMYSKCGSITSSHQIFNEMAARDFVS-WTTLISGYGFHG--- 413
           M     F  S+ +  AL +   + G +  ++   +EM  +   S W+TL+     H    
Sbjct: 398 MSNQYGFVPSLEHCAALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLLRACRVHKNTV 457

Query: 414 YGEEALQLFLEMQESGVEPDAITVLAILS 442
             EE  +   E+     EP ++    ILS
Sbjct: 458 LAEEVAKKIFEL-----EPKSMGSHVILS 481



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 168/383 (43%), Gaps = 45/383 (11%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           +E+   G   +T  L +V+   A     +  G+ +H  A+K+G D D  + +SLI MYA 
Sbjct: 159 REMWRDGFMPDTFTLSTVLPIFAECADIKR-GMVVHGYAIKNGFDNDVFVGSSLIDMYAN 217

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
            ++ + + ++FD     D + WNS++  + QNG    +L +FR M   G        + +
Sbjct: 218 CTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSL 277

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           I     +  L LG+Q+HA +I    F  ++F+S++L+D+Y KC +  IA RVF  +   +
Sbjct: 278 IPAFGNLSLLRLGKQLHAYLI-RARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPD 336

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
            VSWTAMI G            LF  M+   VKP  +T   VL AC+       G   +G
Sbjct: 337 IVSWTAMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHA-----GLVDNG 391

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
           + Y       +    +L H                           +++     ++GDL 
Sbjct: 392 WKYFNSMSNQYGFVPSLEHC--------------------------AALADTLGRAGDLD 425

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCT--RQSFLSHGLGVHCYIMKAGLNFDVSIGN- 372
           EA    S M   +I+P S     +L +C   + + L+  +    + ++       S+G+ 
Sbjct: 426 EAYNFISEM---KIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPK-----SMGSH 477

Query: 373 -ALMNMYSKCGSITSSHQIFNEM 394
             L NMYS  G    + Q+   M
Sbjct: 478 VILSNMYSASGRWNEAAQLRKSM 500


>gi|16905194|gb|AAL31064.1|AC090120_10 hypothetical protein [Oryza sativa Japonica Group]
 gi|31432781|gb|AAP54374.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 698

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 180/561 (32%), Positives = 306/561 (54%), Gaps = 4/561 (0%)

Query: 20  PSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA-DPVISNSLISMYAKFSK 78
           P+   + T  L S++++C  A   +  G  LH   + SG+ A    ++N LI+MY+  + 
Sbjct: 13  PAPDAATTVHLASLLQSCGRAGDLRR-GRLLHARLVLSGAAAASTFLANHLITMYSHCAD 71

Query: 79  PESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISL 138
             SA +LF  MP R+ +SW ++++  +QN  +  +L  F  M   G       L+     
Sbjct: 72  LASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARA 131

Query: 139 CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
            + +G    G Q+H + +  G F+  +FV++ L D+YSKC     A RVF+QM  ++ V+
Sbjct: 132 AAALGAPLPGAQLHCVGVRLG-FDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVA 190

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREG-VKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
           WTAMI G   + + +  +  FR M+REG V   +     VL A   L+D    K+IH   
Sbjct: 191 WTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCV 250

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
              GF+ +  +  AL+ MY +  +    +R++       +VV  +S+I GY ++  + EA
Sbjct: 251 TKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEA 310

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
           + ++  +R + +EPN  T  +++  C  Q+ L  G  +H  ++K  L  D  +G+ L++M
Sbjct: 311 LVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDM 370

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           Y KCG I+ S Q+FNE+  R  ++W  +I+ +  HG+G EA+Q F  M  SG+ P+ I  
Sbjct: 371 YGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAF 430

Query: 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
           +++L+AC+HAGLV E    F ++ +   I    EHY+C +D  G++G++++A K +S MP
Sbjct: 431 VSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMP 490

Query: 498 MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEE 557
           +KP+     SL+ ACR+ G  E+ E+ A  L++ EP N   +  LS + +  G W   + 
Sbjct: 491 IKPNAYGWCSLLGACRMRGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKA 550

Query: 558 VWRVMRAKGLSKSYGFSRIEN 578
           V ++MR   + K  GFS +++
Sbjct: 551 VRKLMRDSRIKKLPGFSWVDS 571


>gi|296087156|emb|CBI33530.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 166/534 (31%), Positives = 283/534 (52%), Gaps = 2/534 (0%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G+ +H   +K   +   +I N L+S+Y KF     A+QLFD MP RD +S+N++I+   +
Sbjct: 78  GMSVHTYLVKLNINGFILIWNKLLSLYLKFGHIHHAHQLFDTMPRRDVVSFNTMISASVR 137

Query: 107 NGFYVRSL-EMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSV 165
           N +    L  ++ +M            AG+I  C  +  L L    HA  +  G    + 
Sbjct: 138 NNYDALDLVGLYSKMKKEDVKPNHITFAGLIGACDGLIALRLRGIFHAHTVRCG-LSSNE 196

Query: 166 FVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
           FV ++L+D Y+K      A++ F +++  + VSW  MI GC  + + +  + +F  M + 
Sbjct: 197 FVGSSLVDGYAKQMKLEDAIKAFNEIMELDLVSWNIMIDGCARNNSKEHAVRMFSQMLKG 256

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
            V+    TLT ++  C++  DL++G   HG A   G   +  +  AL+ MY +C + +  
Sbjct: 257 NVRVDGFTLTSIIKTCSKPGDLKHGMQFHGSAIKLGLAHETPIYNALITMYSKCEKGVAS 316

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
              IF      +++ W+++I G+ Q+    EA+ LF  M    +  N  +  +IL     
Sbjct: 317 PVKIFGSISEPNIISWTAMISGFMQNEQNEEAIGLFKEMLRLGVRENDFSFSSILPVYGN 376

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
            + L  G  +H  I+K+    D+S+ NAL++MYSKCGS+  +H +F +M   D VS TT+
Sbjct: 377 LANLEQGKQIHARIIKSWFGLDLSVNNALIDMYSKCGSLEDAHLVFMKMGKHDVVSCTTM 436

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           I  YG HG G+EAL++  EM+  G+ PD +T L  L AC+H GLV+E   +F  ++++  
Sbjct: 437 IMSYGQHGKGKEALEILAEMKSEGLVPDGVTFLGCLYACSHGGLVEEGVRVFKIMIEDHN 496

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
           +    EH+AC VD+LG++G++ +A   +  M ++    +  +L+ ACR+HG + + E  A
Sbjct: 497 LKPKREHFACVVDMLGRAGRLNEAENFIDEMGIESDVLVWETLLGACRVHGEMVLGEKSA 556

Query: 526 HQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIENE 579
            +++E +P     Y LL+ + +E G+W     V   + + GL K  G S +  E
Sbjct: 557 QKIMELQPGRHGPYVLLANIYAERGSWEDKVMVREKLVSHGLKKQVGCSWVALE 610



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 117/432 (27%), Positives = 204/432 (47%), Gaps = 9/432 (2%)

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           I+  C+  G+L  G  +H   +V  +    + +   LL LY K  H   A ++F+ M  R
Sbjct: 65  ILQECTDAGDLRTGMSVHT-YLVKLNINGFILIWNKLLSLYLKFGHIHHAHQLFDTMPRR 123

Query: 195 NEVSWTAMISGCIDSQNYDT--GIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKA 252
           + VS+  MIS  +   NYD    + L+  M++E VKP  +T   ++ AC  L  LR    
Sbjct: 124 DVVSFNTMISASV-RNNYDALDLVGLYSKMKKEDVKPNHITFAGLIGACDGLIALRLRGI 182

Query: 253 IHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSG 312
            H +   CG   +  + ++L+  Y +  + L  A   F      D+V W+ +I G +++ 
Sbjct: 183 FHAHTVRCGLSSNEFVGSSLVDGYAKQMK-LEDAIKAFNEIMELDLVSWNIMIDGCARNN 241

Query: 313 DLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN 372
               A+++FS+M    +  +  TL +I+ +C++   L HG+  H   +K GL  +  I N
Sbjct: 242 SKEHAVRMFSQMLKGNVRVDGFTLTSIIKTCSKPGDLKHGMQFHGSAIKLGLAHETPIYN 301

Query: 373 ALMNMYSKC-GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
           AL+ MYSKC   + S  +IF  ++  + +SWT +ISG+  +   EEA+ LF EM   GV 
Sbjct: 302 ALITMYSKCEKGVASPVKIFGSISEPNIISWTAMISGFMQNEQNEEAIGLFKEMLRLGVR 361

Query: 432 PDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACK 491
            +  +  +IL    +   +++ + +   ++K     L +      +D+  K G +EDA  
Sbjct: 362 ENDFSFSSILPVYGNLANLEQGKQIHARIIKS-WFGLDLSVNNALIDMYSKCGSLEDAHL 420

Query: 492 VVSTMPMKPSTRILSSLVSACRIHGR-LEVAEMLAHQLIEAEPENAANYTLLSMVCSESG 550
           V   M  K      ++++ +   HG+  E  E+LA    E    +   +      CS  G
Sbjct: 421 VFMKMG-KHDVVSCTTMIMSYGQHGKGKEALEILAEMKSEGLVPDGVTFLGCLYACSHGG 479

Query: 551 NWLGAEEVWRVM 562
                  V+++M
Sbjct: 480 LVEEGVRVFKIM 491



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 117/236 (49%), Gaps = 15/236 (6%)

Query: 325 RLERIEPNSVTL---LAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
           +LE I+ +S        IL  CT    L  G+ VH Y++K  +N  + I N L+++Y K 
Sbjct: 48  KLETIDDHSFKFHQFSQILQECTDAGDLRTGMSVHTYLVKLNINGFILIWNKLLSLYLKF 107

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGE-EALQLFLEMQESGVEPDAITVLAI 440
           G I  +HQ+F+ M  RD VS+ T+IS    + Y   + + L+ +M++  V+P+ IT   +
Sbjct: 108 GHIHHAHQLFDTMPRRDVVSFNTMISASVRNNYDALDLVGLYSKMKKEDVKPNHITFAGL 167

Query: 441 LSACNHAGLVK-EAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDACKVVSTMP 497
           + AC+  GL+      +F+      +  L+   +  +  VD   K  K+EDA K  + + 
Sbjct: 168 IGACD--GLIALRLRGIFH--AHTVRCGLSSNEFVGSSLVDGYAKQMKLEDAIKAFNEI- 222

Query: 498 MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV--CSESGN 551
           M+      + ++  C  +   E A  +  Q+++        +TL S++  CS+ G+
Sbjct: 223 MELDLVSWNIMIDGCARNNSKEHAVRMFSQMLKGNVR-VDGFTLTSIIKTCSKPGD 277


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 172/553 (31%), Positives = 279/553 (50%), Gaps = 70/553 (12%)

Query: 55  LKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSL 114
           LK G D+D  I N+LI+MYA       A ++FD     D +SWNS+              
Sbjct: 153 LKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSM-------------- 198

Query: 115 EMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDL 174
                  L G+VL              +G +E  + ++     D   E +V  S +++ L
Sbjct: 199 -------LAGYVL--------------VGNVEEAKDVY-----DRMPERNVIASNSMIVL 232

Query: 175 YSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTL 234
           + K  +   A ++F +M  ++ VSW+A+IS    ++ Y+  + LF+ M   G+    V +
Sbjct: 233 FGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVV 292

Query: 235 TIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEA------------ 282
             VL AC+ L  +  GK +HG     G +   +L  AL+HMY  C E             
Sbjct: 293 LSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCC 352

Query: 283 ------------------LHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM 324
                             +  AR +F+    KD V WS++I GY+Q    +E + LF  M
Sbjct: 353 LDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEM 412

Query: 325 RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSI 384
           ++E  +P+   L++++S+CT  + L  G  +H YI K GL  ++ +G  L+NMY K G +
Sbjct: 413 QIEGTKPDETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCV 472

Query: 385 TSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
             + ++F  +  +   +W  LI G   +G  +++L+ F EM+E GV P+ IT +A+L AC
Sbjct: 473 EDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGAC 532

Query: 445 NHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRI 504
            H GLV E    FN++++E KI   I+HY C VDLLG++G +++A +++ +MPM P    
Sbjct: 533 RHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVST 592

Query: 505 LSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRA 564
             +L+ AC+ +G  E  E +  +L+E  P++     LLS + +  GNW+   EV  +MR 
Sbjct: 593 WGALLGACKKYGDNETGERIGRKLVELHPDHDGFNVLLSNIYASKGNWVDVLEVRGMMRQ 652

Query: 565 KGLSKSYGFSRIE 577
            G+ K+ G S IE
Sbjct: 653 HGVVKTPGCSMIE 665



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 148/327 (45%), Gaps = 50/327 (15%)

Query: 125 FVLKAELLAGIISL----CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
           F LK  L   I+      C  I +     QI + +I+ G F+ S F ++ LL   ++   
Sbjct: 18  FTLKPTLTLPILETHLQKCQNIKQF---NQILSQMILSGFFKDS-FAASRLLKFSTELPF 73

Query: 181 WLI--ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVL 238
             I  + ++F  +   N      M+ G +   +    I +++ M    V     T  I+ 
Sbjct: 74  ININQSYQIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILF 133

Query: 239 LACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDV 298
            +C+      +GK I  +    GFD D ++   L++MY  C   L  AR +F+ + V D+
Sbjct: 134 QSCSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGN-LSDARKVFDGSSVLDM 192

Query: 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCY 358
           V W+S++ GY   G++ EA  ++ RM  ER                              
Sbjct: 193 VSWNSMLAGYVLVGNVEEAKDVYDRMP-ER------------------------------ 221

Query: 359 IMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEA 418
                   +V   N+++ ++ K G++  + ++FNEM  +D VSW+ LIS Y  +   EEA
Sbjct: 222 --------NVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEA 273

Query: 419 LQLFLEMQESGVEPDAITVLAILSACN 445
           L LF EM  +G+  D + VL++LSAC+
Sbjct: 274 LILFKEMNANGIMVDEVVVLSVLSACS 300



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 122/251 (48%), Gaps = 7/251 (2%)

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECT-EALHP 285
           +KPT +TL I+     + ++++    I       GF  D   ++ L+    E     ++ 
Sbjct: 20  LKPT-LTLPILETHLQKCQNIKQFNQILSQMILSGFFKDSFAASRLLKFSTELPFININQ 78

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           +  IF   +  +  I +++++GY Q     +A+ ++  M    +  ++ T   +  SC+ 
Sbjct: 79  SYQIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSI 138

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
           +     G  +  +++K G + DV I N L+NMY+ CG+++ + ++F+  +  D VSW ++
Sbjct: 139 RLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSM 198

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           ++GY   G  EEA  ++  M E  V    I   +++      G V+EA  LFN  MK+K 
Sbjct: 199 LAGYVLVGNVEEAKDVYDRMPERNV----IASNSMIVLFGKKGNVEEACKLFNE-MKQKD 253

Query: 466 IALAIEHYACY 476
           +       +CY
Sbjct: 254 LVSWSALISCY 264


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 173/552 (31%), Positives = 295/552 (53%), Gaps = 8/552 (1%)

Query: 30  LPSVIKAC-AYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDE 88
           + S +K C A+     H   Q HC  L+ G   D  + N L+     F+  + A  +F +
Sbjct: 1   MGSELKKCFAWGLKSLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQ 60

Query: 89  MPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGE-LEL 147
            P+ +   +N++I     N  +  ++ ++  M   GF         ++  C+++     +
Sbjct: 61  TPHPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHV 120

Query: 148 GRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCI 207
           G  +H+LVI  G F+  VFV T L+ LYSK      A +VF+++  +N VSWTA+I G I
Sbjct: 121 GLSLHSLVIKTG-FDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYI 179

Query: 208 DSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
           +S  +   + LFR +   G++P   TL  +L AC+ + DL +G+ I GY    G   +  
Sbjct: 180 ESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVF 239

Query: 268 LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
           ++ +L+ MY +C  ++  AR +F+    KDVV WS++I+GY+ +G   EA+ +F  M+ E
Sbjct: 240 VATSLVDMYAKCG-SMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRE 298

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF--DVSIGNALMNMYSKCGSIT 385
            + P+   ++ + S+C+R   L   LG     +  G  F  +  +G AL++ Y+KCGS+ 
Sbjct: 299 NVRPDCYAMVGVFSACSRLGALE--LGNWARGLMDGDEFLSNPVLGTALIDFYAKCGSVA 356

Query: 386 SSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
            + ++F  M  +D V +  +ISG    G+   A  +F +M + G++PD  T + +L  C 
Sbjct: 357 QAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCT 416

Query: 446 HAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRIL 505
           HAGLV +    F+ +     +   IEHY C VDL  ++G + +A  ++ +MPM+ ++ + 
Sbjct: 417 HAGLVDDGHRYFSGMSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANSIVW 476

Query: 506 SSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAK 565
            +L+  CR+H   ++AE +  QLIE EP N+ +Y LLS + S S  W  AE++   +  K
Sbjct: 477 GALLGGCRLHKDTQLAEHVLKQLIELEPWNSGHYVLLSNIYSASHRWDEAEKIRSSLNQK 536

Query: 566 GLSKSYGFSRIE 577
           G+ K  G S +E
Sbjct: 537 GMQKLPGCSWVE 548



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 118/434 (27%), Positives = 209/434 (48%), Gaps = 14/434 (3%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           MVS   +   + +Y   +   G   +    P V+KAC     + H GL LH   +K+G D
Sbjct: 76  MVSNDAFRDAVSVYAS-MRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFD 134

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
            D  +   L+ +Y+K      A ++FDE+P ++ +SW +II  + ++G +  +L +FR +
Sbjct: 135 WDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGL 194

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
              G    +  L  I+  CS++G+L  GR I   +   GS   +VFV+T+L+D+Y+KC  
Sbjct: 195 LEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVG-NVFVATSLVDMYAKCGS 253

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
              A RVF+ MV ++ V W+A+I G   +      +D+F  MQRE V+P    +  V  A
Sbjct: 254 MEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSA 313

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
           C+ L  L  G    G      F  +  L  AL+  Y +C  ++  A+ +F+  + KD V+
Sbjct: 314 CSRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKCG-SVAQAKEVFKGMRRKDCVV 372

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           ++++I G +  G +  A  +F +M    ++P+  T + +L  CT    +  G   H Y  
Sbjct: 373 FNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVDDG---HRYFS 429

Query: 361 KAGLNFDVSIG----NALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFHG-- 413
                F V+        ++++ ++ G +  +  +   M    + + W  L+ G   H   
Sbjct: 430 GMSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANSIVWGALLGGCRLHKDT 489

Query: 414 -YGEEALQLFLEMQ 426
              E  L+  +E++
Sbjct: 490 QLAEHVLKQLIELE 503


>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 616

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 178/561 (31%), Positives = 288/561 (51%), Gaps = 35/561 (6%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAY--QLFDEMPYRDTISWNSIINCFTQN 107
           LH   +  G   + +    LIS  A     +  Y  ++FD++P  +   +NS+I  ++ +
Sbjct: 7   LHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLIRGYSNS 66

Query: 108 GFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFV 167
              + ++ +FR M   G       L  ++  C           +H L I  G   L VFV
Sbjct: 67  DDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGSL-VFV 125

Query: 168 STALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV 227
             AL+ +Y  C     A ++F+ +  +  VSW +MI G     N+     LFR M+  G+
Sbjct: 126 QNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKMREWGM 185

Query: 228 KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPAR 287
           +P   T   +L  C++ RDL  G+ +H      G   D  +  AL+ MY +C   LH A+
Sbjct: 186 EPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGN-LHSAQ 244

Query: 288 IIFERTKVKDVVIWSSIIRGYSQSGDLS-------------------------------E 316
            IF+RT+ K+VV W+S+I  Y+Q G +                                E
Sbjct: 245 AIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYRE 304

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
           A+ LF++MR  R+ P+  TL++IL++C++   L  G  +H YI+     + V++ N+L++
Sbjct: 305 ALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLID 364

Query: 377 MYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAIT 436
           MY+KCG + ++  IF EM  ++ VSW  +I     HG G EA++LF EMQ  G  PD IT
Sbjct: 365 MYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEIT 424

Query: 437 VLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
           +  +LSAC+H+GLV      F+ +    ++   IEHYAC VDLLG+ G + +A +++  M
Sbjct: 425 LTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELIGRM 484

Query: 497 PMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAE 556
           PMKP   +  +L+ ACRIHG +E+ + +  QL+E EP +   Y L+S +  E+  W   +
Sbjct: 485 PMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIYWEAQRWEDVK 544

Query: 557 EVWRVMRAKGLSKSYGFSRIE 577
           ++ ++M  +G+ K    S IE
Sbjct: 545 KIRKLMIDRGIKKGRAISSIE 565



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 123/445 (27%), Positives = 208/445 (46%), Gaps = 45/445 (10%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           SGL  N   LP V+KAC     +    + +H  A+K G  +   + N+LI++Y       
Sbjct: 82  SGLSPNEFTLPFVLKACGCKSAYWE-AVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIH 140

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
            A +LFD++  +  +SWNS+I  +   G +  +  +FR+M   G          ++S+CS
Sbjct: 141 CARKLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKMREWGMEPDGFTFVNLLSVCS 200

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH------------------WL 182
           Q  +L+LGR +H  + + G  ++ + V  AL+D+Y+KC +                  W 
Sbjct: 201 QSRDLDLGRYVHFCIEITG-VKIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWT 259

Query: 183 -------------IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKP 229
                        +A ++F+QM  +N VSW +MIS  +    Y   +DLF  M+   V P
Sbjct: 260 SMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVP 319

Query: 230 TRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARII 289
              TL  +L AC++L DL  GK IH Y       +   L  +L+ MY +C   +    I 
Sbjct: 320 DEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIF 379

Query: 290 FERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFL 349
            E    K++V W+ II   +  G   EA+KLF  M+ +   P+ +TL  +LS+C+    +
Sbjct: 380 LEMPG-KNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLV 438

Query: 350 SHGLGVHCYIMKAGLNFDVSIG----NALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTT 404
             GL    Y  + G+ + V         ++++  + G +  + ++   M  + D V W  
Sbjct: 439 DMGL---YYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELIGRMPMKPDVVVWGA 495

Query: 405 LISGYGFHG---YGEEALQLFLEMQ 426
           L+     HG    G++ L+  LE++
Sbjct: 496 LLGACRIHGNVEIGKQILKQLLELE 520



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 72/142 (50%), Gaps = 2/142 (1%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           Y + L L+ + +  S +  + A L S++ AC+        G ++H   L +       + 
Sbjct: 302 YREALDLFNK-MRNSRVVPDEATLVSILAACS-QLGDLVMGKKIHNYILSNKGAYGVTLY 359

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           NSLI MYAK     +A  +F EMP ++ +SWN II     +G  + ++++F EM   G +
Sbjct: 360 NSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTL 419

Query: 127 LKAELLAGIISLCSQIGELELG 148
                L G++S CS  G +++G
Sbjct: 420 PDEITLTGLLSACSHSGLVDMG 441


>gi|115473581|ref|NP_001060389.1| Os07g0635800 [Oryza sativa Japonica Group]
 gi|22293699|dbj|BAC10044.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113611925|dbj|BAF22303.1| Os07g0635800 [Oryza sativa Japonica Group]
 gi|125601219|gb|EAZ40795.1| hypothetical protein OsJ_25273 [Oryza sativa Japonica Group]
          Length = 705

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 167/579 (28%), Positives = 316/579 (54%), Gaps = 9/579 (1%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACA----YAQTHQHFGLQLHCTALK 56
           +V    + + L ++   ++   +  +    P VIKACA     AQ  + +  ++  T + 
Sbjct: 129 LVDAGRFSEALEMFWGMVNDGSVAVDGFTYPPVIKACAALGAVAQGRKVW--EMVETDIA 186

Query: 57  SGSDADPV-ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLE 115
           SG+    V +  +L+ M+AK    + A  +F+ M  RD  +W ++I     +G ++  ++
Sbjct: 187 SGNARPNVFVQCALVDMFAKCGCLDEARNVFESMQVRDLAAWTAMIGGTVHSGNWLEVVD 246

Query: 116 MFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLY 175
           +F  M   GF + + + A +IS C + GEL++G  +H   +  G+    ++VS AL+D+Y
Sbjct: 247 LFNHMRSEGFGVDSLIAATVISACGRAGELQVGTALHGCAVKSGA-SGDIYVSNALVDMY 305

Query: 176 SKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLT 235
            KC    +A  +F     ++ VSW+++I G   +  ++  + LF  M   G+ P   TL 
Sbjct: 306 CKCGCVEMADCLFWSTNSKDVVSWSSLIVGYSQNGMHNVSVSLFCEMISLGINPNSSTLA 365

Query: 236 IVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV 295
            +L   + L+ +R+GK IH ++   G +    + +AL+ +Y +    +  A  IF  T  
Sbjct: 366 SILPCLSVLKLIRSGKEIHCFSIRHGLERSEFVVSALIDLYSK-QGLIRVAETIFWLTLD 424

Query: 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV 355
           KD+ IW+S++ GY+ +G    A      ++   ++P+ VT++++L  C +   L  G  +
Sbjct: 425 KDLAIWNSMVAGYAVNGYSDSAFCALRLLQKVGLKPDHVTVVSVLPLCNQHHMLIQGKEL 484

Query: 356 HCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYG 415
           H Y++K  +N   S+ NAL++MY KCG +  + ++F  M  R+ V++  LIS +G H + 
Sbjct: 485 HAYVIKYCINSVCSVNNALLDMYCKCGFLEVAKEVFQLMTERNTVTYNILISSFGKHNHE 544

Query: 416 EEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC 475
           ++AL  F  M+  G+ PD +T +A+LS C+HAGL+ +   L+++++ +  I+   EHY+C
Sbjct: 545 DQALSFFDLMKRDGIAPDKVTFVALLSCCSHAGLIDKGLHLYHSMLHDYNISPEKEHYSC 604

Query: 476 YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPEN 535
            VDL  + GK+++A   +S M  +P   +L  L++ACR+H R+++AE++  ++ E  P +
Sbjct: 605 IVDLYSRCGKLDEAWCFMSNMAEEPEIDVLGGLLAACRVHNRMDIAELVGKRIFEQNPND 664

Query: 536 AANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFS 574
              + LLS + +++G W     +  +++ + L K  G S
Sbjct: 665 PGYHILLSNIYADAGMWSDVTRIRTMIQERNLKKETGNS 703



 Score =  236 bits (601), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 140/418 (33%), Positives = 222/418 (53%), Gaps = 5/418 (1%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           +LH   L  G     V+   L+  YAK      A ++FD MP R++ +WN++I      G
Sbjct: 74  RLHAAVLVGGHGHGTVLVAQLVRAYAKLGDVAHALRVFDGMPRRNSFAWNAVIKGLVDAG 133

Query: 109 FYVRSLEMFREMYLCGFV-LKAELLAGIISLCSQIGELELGRQIHALV---IVDGSFELS 164
            +  +LEMF  M   G V +       +I  C+ +G +  GR++  +V   I  G+   +
Sbjct: 134 RFSEALEMFWGMVNDGSVAVDGFTYPPVIKACAALGAVAQGRKVWEMVETDIASGNARPN 193

Query: 165 VFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR 224
           VFV  AL+D+++KC     A  VFE M +R+  +WTAMI G + S N+   +DLF  M+ 
Sbjct: 194 VFVQCALVDMFAKCGCLDEARNVFESMQVRDLAAWTAMIGGTVHSGNWLEVVDLFNHMRS 253

Query: 225 EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
           EG     +    V+ AC    +L+ G A+HG A   G   D ++S AL+ MYC+C   + 
Sbjct: 254 EGFGVDSLIAATVISACGRAGELQVGTALHGCAVKSGASGDIYVSNALVDMYCKCG-CVE 312

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
            A  +F  T  KDVV WSS+I GYSQ+G  + ++ LF  M    I PNS TL +IL   +
Sbjct: 313 MADCLFWSTNSKDVVSWSSLIVGYSQNGMHNVSVSLFCEMISLGINPNSSTLASILPCLS 372

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
               +  G  +HC+ ++ GL     + +AL+++YSK G I  +  IF     +D   W +
Sbjct: 373 VLKLIRSGKEIHCFSIRHGLERSEFVVSALIDLYSKQGLIRVAETIFWLTLDKDLAIWNS 432

Query: 405 LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462
           +++GY  +GY + A      +Q+ G++PD +TV+++L  CN   ++ + + L   V+K
Sbjct: 433 MVAGYAVNGYSDSAFCALRLLQKVGLKPDHVTVVSVLPLCNQHHMLIQGKELHAYVIK 490


>gi|224087027|ref|XP_002308034.1| predicted protein [Populus trichocarpa]
 gi|222854010|gb|EEE91557.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 172/533 (32%), Positives = 287/533 (53%), Gaps = 7/533 (1%)

Query: 46  FGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT 105
            G Q+H   +KSG + +  +  SLISMY++    + A ++F+ +  +D    N +I  + 
Sbjct: 28  LGEQIHGFVIKSGFEENVFVGTSLISMYSRSGNFDEAEKVFNGVGCKDLRCLNCMILEYG 87

Query: 106 QNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSV 165
           + G+  R++ +F  +   G          IIS C+    +E G+Q+H L +  G   L  
Sbjct: 88  KAGYEKRAIGVFIYLISVGLDPNDYTFTNIISTCN----VEEGKQLHGLAVKYGVL-LQT 142

Query: 166 FVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
            V  A++ +Y K      A R+F  M  +N +SWTA+ISG   +   +  +D F  ++  
Sbjct: 143 SVGNAVITMYGKNGMVEEAARMFSVMNKKNLISWTALISGYTRNGYGEKAVDGFLELRGC 202

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
           GV+     L  +L  C+E ++L  G  IHG     G+  D ++  AL+ +Y +C +    
Sbjct: 203 GVECDSGLLATILDGCSECKNLDLGTQIHGLVIKLGYPCDINIGTALIDLYAKC-KNFQS 261

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSE-AMKLFSRMRLERIEPNSVTLLAILSSCT 344
           AR +F     +    +++I+ G+ ++    E  M   S++RL  I+P+SV+   +LS   
Sbjct: 262 ARTVFNGLSPRSTASFNAILVGFIENDSNEEDPMVFLSQLRLAGIKPDSVSFSRLLSLSA 321

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
            ++ L  G G+H Y +K G    +S+ NAL+ MY+KCG +  ++Q FN M+A D +SW  
Sbjct: 322 NRASLVKGRGLHAYSIKTGFAGHISVSNALITMYAKCGIVEDAYQAFNSMSANDCISWNA 381

Query: 405 LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK 464
           +IS Y  HG GE+AL L+ EM+E G  PD IT+L IL AC ++GL ++   LFN +  + 
Sbjct: 382 IISAYSLHGQGEKALLLYQEMEEKGFTPDEITILVILQACTYSGLSEDGLHLFNTMESKY 441

Query: 465 KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEML 524
            I   +EHYAC VDLLG++G +  A  +++  P   ST +  +LV+ C++ G L + ++ 
Sbjct: 442 GIQPLLEHYACMVDLLGRAGYLSQAMDIINRSPFSESTLLWRTLVNVCKLCGDLNLGKLA 501

Query: 525 AHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +  L++  P+ A +Y L+S + +  G    A +V   M+   LSK  G S +E
Sbjct: 502 SKHLLDLSPDEAGSYVLVSNIYAGEGMIDEASKVRTTMKDLKLSKEAGSSWVE 554



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 120/435 (27%), Positives = 218/435 (50%), Gaps = 14/435 (3%)

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           I+  CS IG++ LG QIH  VI  G FE +VFV T+L+ +YS+  ++  A +VF  +  +
Sbjct: 16  ILQACSDIGDVVLGEQIHGFVIKSG-FEENVFVGTSLISMYSRSGNFDEAEKVFNGVGCK 74

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
           +      MI     +      I +F  +   G+ P   T T ++  C    ++  GK +H
Sbjct: 75  DLRCLNCMILEYGKAGYEKRAIGVFIYLISVGLDPNDYTFTNIISTC----NVEEGKQLH 130

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
           G A   G      +  A++ MY +       AR +F     K+++ W+++I GY+++G  
Sbjct: 131 GLAVKYGVLLQTSVGNAVITMYGKNGMVEEAAR-MFSVMNKKNLISWTALISGYTRNGYG 189

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
            +A+  F  +R   +E +S  L  IL  C+    L  G  +H  ++K G   D++IG AL
Sbjct: 190 EKAVDGFLELRGCGVECDSGLLATILDGCSECKNLDLGTQIHGLVIKLGYPCDINIGTAL 249

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL-EMQESGVEPD 433
           +++Y+KC +  S+  +FN ++ R   S+  ++ G+  +   EE   +FL +++ +G++PD
Sbjct: 250 IDLYAKCKNFQSARTVFNGLSPRSTASFNAILVGFIENDSNEEDPMVFLSQLRLAGIKPD 309

Query: 434 AITVLAILS-ACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKV 492
           +++   +LS + N A LVK    L    +K    A  I      + +  K G +EDA + 
Sbjct: 310 SVSFSRLLSLSANRASLVK-GRGLHAYSIK-TGFAGHISVSNALITMYAKCGIVEDAYQA 367

Query: 493 VSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV--CSESG 550
            ++M         ++++SA  +HG+ E A +L +Q +E +       T+L ++  C+ SG
Sbjct: 368 FNSMSANDCIS-WNAIISAYSLHGQGEKA-LLLYQEMEEKGFTPDEITILVILQACTYSG 425

Query: 551 NWLGAEEVWRVMRAK 565
                  ++  M +K
Sbjct: 426 LSEDGLHLFNTMESK 440



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 118/221 (53%), Gaps = 5/221 (2%)

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
           G K    T  ++L AC+++ D+  G+ IHG+    GF+ +  +  +L+ MY   +     
Sbjct: 5   GEKFNEHTCVVILQACSDIGDVVLGEQIHGFVIKSGFEENVFVGTSLISMYSR-SGNFDE 63

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           A  +F     KD+   + +I  Y ++G    A+ +F  +    ++PN  T   I+S+C  
Sbjct: 64  AEKVFNGVGCKDLRCLNCMILEYGKAGYEKRAIGVFIYLISVGLDPNDYTFTNIISTCN- 122

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
              +  G  +H   +K G+    S+GNA++ MY K G +  + ++F+ M  ++ +SWT L
Sbjct: 123 ---VEEGKQLHGLAVKYGVLLQTSVGNAVITMYGKNGMVEEAARMFSVMNKKNLISWTAL 179

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH 446
           ISGY  +GYGE+A+  FLE++  GVE D+  +  IL  C+ 
Sbjct: 180 ISGYTRNGYGEKAVDGFLELRGCGVECDSGLLATILDGCSE 220



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 88/168 (52%), Gaps = 5/168 (2%)

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIF 391
           N  T + IL +C+    +  G  +H +++K+G   +V +G +L++MYS+ G+   + ++F
Sbjct: 9   NEHTCVVILQACSDIGDVVLGEQIHGFVIKSGFEENVFVGTSLISMYSRSGNFDEAEKVF 68

Query: 392 NEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVK 451
           N +  +D      +I  YG  GY + A+ +F+ +   G++P+  T   I+S CN    V+
Sbjct: 69  NGVGCKDLRCLNCMILEYGKAGYEKRAIGVFIYLISVGLDPNDYTFTNIISTCN----VE 124

Query: 452 EAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           E + L    +K   + L        + + GK+G +E+A ++ S M  K
Sbjct: 125 EGKQLHGLAVK-YGVLLQTSVGNAVITMYGKNGMVEEAARMFSVMNKK 171


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 177/581 (30%), Positives = 306/581 (52%), Gaps = 26/581 (4%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHF-GLQLHCTALKSGSDADPVISN 67
           Q+L +   ++  +GL++    L  +++ C  +    HF GL    +   +  +   +I N
Sbjct: 16  QSLRIIHAQMIKTGLHNTNYALSKLLEXCVLSP---HFDGLPYAISVFDTIQEPXLLIWN 72

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT---------QNGFYVRSLEMFR 118
           ++   +A  S P SA +L+  M     +S   + N +T         ++  +    ++  
Sbjct: 73  TMFRGHALSSDPVSALKLYVCM-----VSLGLLPNSYTFPFLLKSCAKSXAFKEGQQLHG 127

Query: 119 EMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKC 178
           ++   GF L   +   +IS+  Q G LE  +++      D S    V   TAL+  Y+  
Sbjct: 128 QVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKV-----XDKSSHRDVVSYTALITGYASR 182

Query: 179 HHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVL 238
                A ++F+++ +++ VSW A ISG  ++ NY   ++LF+ M +  V+P   T+  VL
Sbjct: 183 GXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVL 242

Query: 239 LACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDV 298
            ACA+   +  G+ +H +    GF  +  +  AL+ +Y +C E L  A  +F+    KDV
Sbjct: 243 SACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGE-LETACGLFQGLSNKDV 301

Query: 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCY 358
           + W+++I GY+      EA+ LF  M     +PN VT+L+ILS+C     +  G  +H Y
Sbjct: 302 ISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVY 361

Query: 359 IMK--AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGE 416
           I K   G+    S+  +L++MY+KCG I ++ Q+F+ M  R   SW  +I G+  HG   
Sbjct: 362 IDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRAN 421

Query: 417 EALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACY 476
            A  +F  M+++G+EPD IT + +LSAC+H+G++     +F ++ ++ K+   +EHY C 
Sbjct: 422 AAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCM 481

Query: 477 VDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENA 536
           +DL G SG  ++A K+++TM M+P   I  SL+ AC++HG +E+ E  A  LI+ EPEN 
Sbjct: 482 IDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPENP 541

Query: 537 ANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +Y LLS + + +  W    +   ++  KG+ K  G S IE
Sbjct: 542 GSYVLLSNIYATAERWNEVAKTRALLNDKGMKKVPGCSSIE 582


>gi|224094823|ref|XP_002310252.1| predicted protein [Populus trichocarpa]
 gi|222853155|gb|EEE90702.1| predicted protein [Populus trichocarpa]
          Length = 540

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 174/499 (34%), Positives = 282/499 (56%), Gaps = 12/499 (2%)

Query: 84  QLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIG 143
            LFDE+P+RD  S NS +  ++++G ++ + ++F  ++     L A     ++  CS + 
Sbjct: 47  NLFDELPHRDLYSLNSQLASYSRDGNFLATWDLFSRIHSAFLDLDAYTFTPVLRACSALP 106

Query: 144 ELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMI 203
           + + GRQ+HAL+I  G+ +L     TA++D+YSK      +++VFE+M  R+ V+W A++
Sbjct: 107 DTKCGRQVHALMIKTGT-DLGTITKTAVMDMYSKYGCLGESVKVFEEMEFRDVVTWNALV 165

Query: 204 SGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFD 263
           S  +        + +FRAM+RE V+ T  TL  VL ACA ++  R GK +HG     G D
Sbjct: 166 SSFLRHGLAKEALGVFRAMRRESVEITEFTLCSVLKACAFIKAFRQGKQVHGLVIVMGRD 225

Query: 264 FDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSR 323
               L  AL+  Y          ++    +  KD V+ +S+I G  +     EA  + S 
Sbjct: 226 L-VVLGTALIDFYSNVGYISEAMKVFSCLSCRKDEVLRNSLIAGCVKHRRYEEAFLVMST 284

Query: 324 MRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS 383
           MR     PN+V L   L++C+  S L  G+ +HC  ++ G   +  + N L++MY+KCG 
Sbjct: 285 MR-----PNAVALTTALAACSDNSDLWIGMQIHCVALRFGFIANTQVCNVLLDMYAKCGR 339

Query: 384 ITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG--VEPDAITVLAIL 441
           I  S  IF+ +  +  VSWT++I  YG HG+G+EAL+LF EM + G  V P+++T+LA+L
Sbjct: 340 ILKSRSIFDGICHKTVVSWTSMIDAYGRHGHGDEALKLFKEMGQEGSRVLPNSLTLLAVL 399

Query: 442 SACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK-- 499
           SAC H+GLVKE + LFN+  ++  +  + EHY+C +D+LG++G+IEDA  +   M  K  
Sbjct: 400 SACGHSGLVKEGQELFNSAREKYGLDPSQEHYSCVIDILGRAGQIEDAWCLFHDMVKKGI 459

Query: 500 -PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEV 558
            P+  + ++LV+AC ++  +   E  A  L+E EP N   + L+S   +    W   E +
Sbjct: 460 GPTAAVWAALVNACCLNLDVSRGEFAAKHLLELEPNNDGIHVLVSKFYASIDRWDVVESL 519

Query: 559 WRVMRAKGLSKSYGFSRIE 577
              MR KGL+K  G S ++
Sbjct: 520 RNNMRKKGLTKVLGSSWLD 538



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 132/460 (28%), Positives = 230/460 (50%), Gaps = 28/460 (6%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
            +H + L  +      V++AC+ A      G Q+H   +K+G+D   +   +++ MY+K+
Sbjct: 82  RIHSAFLDLDAYTFTPVLRACS-ALPDTKCGRQVHALMIKTGTDLGTITKTAVMDMYSKY 140

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
                + ++F+EM +RD ++WN++++ F ++G    +L +FR M      +    L  ++
Sbjct: 141 GCLGESVKVFEEMEFRDVVTWNALVSSFLRHGLAKEALGVFRAMRRESVEITEFTLCSVL 200

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR-N 195
             C+ I     G+Q+H LVIV G  +L V + TAL+D YS   +   A++VF  +  R +
Sbjct: 201 KACAFIKAFRQGKQVHGLVIVMGR-DL-VVLGTALIDFYSNVGYISEAMKVFSCLSCRKD 258

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
           EV   ++I+GC+  + Y+    +   M     +P  V LT  L AC++  DL  G  IH 
Sbjct: 259 EVLRNSLIAGCVKHRRYEEAFLVMSTM-----RPNAVALTTALAACSDNSDLWIGMQIHC 313

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
            A   GF  +  +   L+ MY +C   L  +R IF+    K VV W+S+I  Y + G   
Sbjct: 314 VALRFGFIANTQVCNVLLDMYAKCGRIL-KSRSIFDGICHKTVVSWTSMIDAYGRHGHGD 372

Query: 316 EAMKLFSRMRLE--RIEPNSVTLLAILSSCTRQSFLSHGLGV-HCYIMKAGLNFDVSIGN 372
           EA+KLF  M  E  R+ PNS+TLLA+LS+C     +  G  + +    K GL+      +
Sbjct: 373 EALKLFKEMGQEGSRVLPNSLTLLAVLSACGHSGLVKEGQELFNSAREKYGLDPSQEHYS 432

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDF----VSWTTLISGYGFH---GYGEEALQLFLEM 425
            ++++  + G I  +  +F++M  +        W  L++    +     GE A +  LE+
Sbjct: 433 CVIDILGRAGQIEDAWCLFHDMVKKGIGPTAAVWAALVNACCLNLDVSRGEFAAKHLLEL 492

Query: 426 QESGVEPDAITVLA--ILSACNHAGLVKEAETLFNNVMKE 463
           + +    D I VL     ++ +   +V   E+L NN+ K+
Sbjct: 493 EPNN---DGIHVLVSKFYASIDRWDVV---ESLRNNMRKK 526


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 175/545 (32%), Positives = 293/545 (53%), Gaps = 43/545 (7%)

Query: 60  DADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFRE 119
           D + +  NS+++ Y +  +P+ A  +FD+M  R+TISWN +++ +  NG    + E+F  
Sbjct: 126 DKNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDR 185

Query: 120 M--------------YLC-GFVLKAELL------AGIISLCSQIGEL-ELGRQIHALVIV 157
           M              Y+  G + +AE L        ++S    +G L + GR   A  + 
Sbjct: 186 MPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLF 245

Query: 158 DGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGID 217
           D   E  V   T ++  Y +    + A  +F++M  RN VSWT MI+G + +Q  D    
Sbjct: 246 DMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARK 305

Query: 218 LFRAMQREGVKPTRVTLTIVLLA---CAEL---RDLRNGKAIHGYAYCCGFDFDHHLSAA 271
           LF  M     +   V+ T +L     C  L    +L N   I     C           A
Sbjct: 306 LFEVMP----EKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVAC----------NA 351

Query: 272 LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP 331
           ++  + +  E +  AR +F++ + KD   WS++I+ Y + G   +A++LF  M+ E I P
Sbjct: 352 MILCFGQNGE-VPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRP 410

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIF 391
           N  +L+++LS C   + L HG  +H  ++++  + DV + + L++MY KCG++  + Q+F
Sbjct: 411 NFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVF 470

Query: 392 NEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVK 451
           +  A +D V W ++I+GY  HG G EAL++F +M  SG+ PD +T + +LSAC++ G VK
Sbjct: 471 DRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVK 530

Query: 452 EAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSA 511
           +   +FN++  + ++   IEHYAC VDLLG++GK+ +A  ++  MPM+    I  +L+ A
Sbjct: 531 KGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGA 590

Query: 512 CRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSY 571
           CR H +L++AE+ A +L+  EP+NA  + LLS + +  G W    E+ R MR + +SK  
Sbjct: 591 CRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYP 650

Query: 572 GFSRI 576
           G S I
Sbjct: 651 GCSWI 655



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 117/399 (29%), Positives = 184/399 (46%), Gaps = 55/399 (13%)

Query: 52  CTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYV 111
           C       + D V   ++I  Y +  +   A  LFDEMP R+ +SW ++I  + QN    
Sbjct: 242 CRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVD 301

Query: 112 RSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL-ELGRQIHALVIVDGSFELSVFVSTA 170
            + ++F  M     V    +L G  + C ++ E  EL    +A+ I       SV    A
Sbjct: 302 IARKLFEVMPEKNEVSWTAMLKGYTN-CGRLDEASEL---FNAMPIK------SVVACNA 351

Query: 171 LLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPT 230
           ++  + +      A +VF+QM  ++E +W+AMI            ++LFR MQREG++P 
Sbjct: 352 MILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPN 411

Query: 231 RVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIF 290
             +L  VL  CA L +L +G+ IH       FD D ++++ L+ MY +C   L  A+ +F
Sbjct: 412 FPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGN-LAKAKQVF 470

Query: 291 ERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLS 350
           +R  VKDVV+W+SII GY+Q G   EA+++F  M    I P+ VT + +LS+C       
Sbjct: 471 DRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSAC------- 523

Query: 351 HGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS-----WTTL 405
                                       S  G++    +IFN M  +  V      +  +
Sbjct: 524 ----------------------------SYTGNVKKGLEIFNSMETKYQVEQKIEHYACM 555

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
           +   G  G   EA+ L  +M    +E DAI   A+L AC
Sbjct: 556 VDLLGRAGKLNEAMDLIEKMP---MEADAIIWGALLGAC 591



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 94/198 (47%), Gaps = 3/198 (1%)

Query: 10  TLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSL 69
            L L++  +   G+  N   L SV+  CA      H G ++H   ++S  D D  +++ L
Sbjct: 396 ALELFRM-MQREGIRPNFPSLISVLSVCAGLANLDH-GREIHAQLVRSQFDLDVYVASVL 453

Query: 70  ISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKA 129
           +SMY K      A Q+FD    +D + WNSII  + Q+G  V +L +F +M+  G +   
Sbjct: 454 LSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDD 513

Query: 130 ELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
               G++S CS  G ++ G +I   +      E  +     ++DL  +      A+ + E
Sbjct: 514 VTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIE 573

Query: 190 QMVIR-NEVSWTAMISGC 206
           +M +  + + W A++  C
Sbjct: 574 KMPMEADAIIWGALLGAC 591



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 73/340 (21%), Positives = 151/340 (44%), Gaps = 46/340 (13%)

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
           YC  F    +   +L+  Y    + +  AR++F+  + K+++ W+SI+ GY Q+    EA
Sbjct: 93  YCSNFIISRN---SLITRYSRLGQ-IEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEA 148

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
             +F +M     E N+++   ++S       ++    V   + +     +V    A++  
Sbjct: 149 QNMFDKMS----ERNTISWNGLVSGYINNGMINEAREVFDRMPER----NVVSWTAMVRG 200

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           Y K G I+ +  +F +M  ++ VSWT ++ G    G  +EA +LF  M E     D +T 
Sbjct: 201 YVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEK----DVVTR 256

Query: 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALA--IEHYA--CYVDLLGK----------- 482
             ++      G + EA  LF+ + +   ++    I  Y     VD+  K           
Sbjct: 257 TNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEV 316

Query: 483 -----------SGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA 531
                       G++++A ++ + MP+K S    ++++     +G +  A  +  Q+ E 
Sbjct: 317 SWTAMLKGYTNCGRLDEASELFNAMPIK-SVVACNAMILCFGQNGEVPKARQVFDQMRE- 374

Query: 532 EPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSY 571
             ++   ++ +  V    G  L A E++R+M+ +G+  ++
Sbjct: 375 --KDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNF 412


>gi|242066256|ref|XP_002454417.1| hypothetical protein SORBIDRAFT_04g030430 [Sorghum bicolor]
 gi|241934248|gb|EES07393.1| hypothetical protein SORBIDRAFT_04g030430 [Sorghum bicolor]
          Length = 703

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 160/549 (29%), Positives = 302/549 (55%), Gaps = 9/549 (1%)

Query: 33  VIKACAYAQTHQHFGLQLHCTALKS-GSDADPVISNSLISMYAKFSKPESAYQLFDEMPY 91
           +++ACA   +  H G  +H  A++S  +  D  ++ +++ MYA+      A   +  +  
Sbjct: 103 LLRACAALPSLAH-GRAVHAVAIRSCTASEDAFVATAIVQMYARCGDMVGAINAYGVLEK 161

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMF-REMYLCGFVLKAELLAGIISLCSQIGELELGRQ 150
            D +   S++  + QNG    +LE F R +   G +L    L   +S  +Q+G +  G+ 
Sbjct: 162 PDIVLRTSVVTGYEQNGMAEEALEFFARNVVGQGVMLTPVTLVSAMSAAAQLGHVRKGQA 221

Query: 151 IHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQ 210
            HA V V  S    + +   +L  Y K   +  ++R+FE M  R+ ++W+ MI G +   
Sbjct: 222 CHAYV-VRNSLGYDLALVNTVLSFYVKIGDFQASMRLFEGMTDRDVITWSCMIKGYVQHG 280

Query: 211 NYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSA 270
           +   G+ ++R M +  V+P  VTL  VL ACA + D   GK +H  A   G + +  ++ 
Sbjct: 281 DAHEGLRMYREMVKARVQPNSVTLVSVLQACALVVDAEEGKRVHRVAVSIGCELEVGVAT 340

Query: 271 ALMHMY--CECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER 328
           AL+ MY  C C E    A  +F R   KDVV W+++I G +Q+    E++ +F  M L+ 
Sbjct: 341 ALVDMYMKCSCHE---EAMCLFHRMPKKDVVAWAAVIGGLTQNELPGESLHVFKCMLLDD 397

Query: 329 IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSH 388
             P+++T++ +L++C+        + +H Y+++ G N +  +  AL+++YSKCG I S+ 
Sbjct: 398 HVPDAITMVKVLAACSEFGGTRLAICLHGYLVRNGFNNNAFVAAALLDLYSKCGDIDSAV 457

Query: 389 QIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG 448
           ++F     +D V W ++I+GYG HG G+EA+ L+  M  S ++P+++T +++LSAC+H+G
Sbjct: 458 RVFEGTTEKDIVVWGSMIAGYGAHGLGQEAVALYQRMIASSIQPNSVTFVSVLSACSHSG 517

Query: 449 LVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSL 508
           LV+E   +F+++ +   +    EH +  VDLLG++G++++A + +  M  +       +L
Sbjct: 518 LVQEGIQIFDSMTQVFGVVPNAEHQSAMVDLLGRAGELQEAIRFIRGMDGRAVAHTWCAL 577

Query: 509 VSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLS 568
           ++ACR H   +++++ A  L++ +P++   Y LL+ + +    W   ++   ++R + L 
Sbjct: 578 LAACREHNNTKMSKVAAKSLLKLDPDHVGYYNLLTNIYAYDEKWESVKDTRDMVRGRDLR 637

Query: 569 KSYGFSRIE 577
           K  G+S +E
Sbjct: 638 KVPGYSSVE 646



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 131/226 (57%), Gaps = 10/226 (4%)

Query: 233 TLTIVLLACAELRDLRNGKAIHGYAY-CCGFDFDHHLSAALMHMYCECTEALHP--ARII 289
           T +++L ACA L  L +G+A+H  A   C    D  ++ A++ MY  C + +    A  +
Sbjct: 99  TFSLLLRACAALPSLAHGRAVHAVAIRSCTASEDAFVATAIVQMYARCGDMVGAINAYGV 158

Query: 290 FERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRL-ERIEPNSVTLLAILSSCTRQSF 348
            E+    D+V+ +S++ GY Q+G   EA++ F+R  + + +    VTL++ +S+  +   
Sbjct: 159 LEK---PDIVLRTSVVTGYEQNGMAEEALEFFARNVVGQGVMLTPVTLVSAMSAAAQLGH 215

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
           +  G   H Y+++  L +D+++ N +++ Y K G   +S ++F  M  RD ++W+ +I G
Sbjct: 216 VRKGQACHAYVVRNSLGYDLALVNTVLSFYVKIGDFQASMRLFEGMTDRDVITWSCMIKG 275

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAE 454
           Y  HG   E L+++ EM ++ V+P+++T++++L AC    LV +AE
Sbjct: 276 YVQHGDAHEGLRMYREMVKARVQPNSVTLVSVLQAC---ALVVDAE 318



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 100/199 (50%), Gaps = 10/199 (5%)

Query: 266 HHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR 325
           HHL+A ++  Y         AR +F+        + ++++R + ++     A+ L  R+R
Sbjct: 38  HHLTAHVLAWYPPGL-----ARDLFDEFPSPTPRLANALLRAHIRARQWRAAILLGPRLR 92

Query: 326 LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA-GLNFDVSIGNALMNMYSKCGSI 384
           + R++  + +LL  L +C     L+HG  VH   +++   + D  +  A++ MY++CG +
Sbjct: 93  V-RLDGFTFSLL--LRACAALPSLAHGRAVHAVAIRSCTASEDAFVATAIVQMYARCGDM 149

Query: 385 TSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE-MQESGVEPDAITVLAILSA 443
             +   +  +   D V  T++++GY  +G  EEAL+ F   +   GV    +T+++ +SA
Sbjct: 150 VGAINAYGVLEKPDIVLRTSVVTGYEQNGMAEEALEFFARNVVGQGVMLTPVTLVSAMSA 209

Query: 444 CNHAGLVKEAETLFNNVMK 462
               G V++ +     V++
Sbjct: 210 AAQLGHVRKGQACHAYVVR 228


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 157/431 (36%), Positives = 246/431 (57%), Gaps = 3/431 (0%)

Query: 148 GRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCI 207
           G+Q+H+L+   G F+ ++FV TAL+D+Y+KC     A+RVF+QM  RN VSW +MI G  
Sbjct: 29  GQQLHSLIHKHG-FDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFF 87

Query: 208 DSQNYDTGIDLFRAMQREG-VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDH 266
            +  YD  + +F+ + RE  V P  V+++ VL ACA +  L  G+ +HG     G     
Sbjct: 88  HNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKFGLVPLT 147

Query: 267 HLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRL 326
           ++  +LM MY +C         +F+    +DVV W+ ++ G+ Q+    EA   F  MR 
Sbjct: 148 YVMNSLMDMYFKC-RFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRR 206

Query: 327 ERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITS 386
           E I P+  +   +L S    + L  G  +H  I+K G   ++ I  +L+ MY+KCGS+  
Sbjct: 207 EGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVD 266

Query: 387 SHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH 446
           ++Q+F  +   + +SWT +IS Y  HG   + ++LF  M   G+EP  +T + +LSAC+H
Sbjct: 267 AYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSH 326

Query: 447 AGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILS 506
            G V+E    FN++ K   +    EHYAC VDLLG++G +++A + + +MPMKP+  +  
Sbjct: 327 TGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWG 386

Query: 507 SLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566
           +L+ ACR +G L++    A +L E EP N  NY LL+ +C+ SG    A EV R+M   G
Sbjct: 387 ALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVLLANMCTRSGRLEEANEVRRLMGVNG 446

Query: 567 LSKSYGFSRIE 577
           + K  G S I+
Sbjct: 447 VRKEPGCSWID 457



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 132/455 (29%), Positives = 230/455 (50%), Gaps = 20/455 (4%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           SG Y N     S++ A A      H G QLH    K G DA+  +  +L+ MYAK +   
Sbjct: 4   SGPYPNQFTFSSILSASAATMMVLH-GQQLHSLIHKHGFDANIFVGTALVDMYAKCADMH 62

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAEL-LAGIISLC 139
           SA ++FD+MP R+ +SWNS+I  F  N  Y R++ +F+++     V+  E+ ++ ++S C
Sbjct: 63  SAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSAC 122

Query: 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSW 199
           + +G L  GRQ+H +V+  G   L+ +V  +L+D+Y KC  +   +++F+ +  R+ V+W
Sbjct: 123 ANMGGLNFGRQVHGVVVKFGLVPLT-YVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTW 181

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
             ++ G + +  ++   + F  M+REG+ P   + + VL + A L  L  G AIH     
Sbjct: 182 NVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIK 241

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
            G+  +  +  +L+ MY +C  +L  A  +FE  +  +V+ W+++I  Y   G  ++ ++
Sbjct: 242 LGYVKNMCILGSLITMYAKCG-SLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIE 300

Query: 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA--GLNFDVSIGNALMNM 377
           LF  M  E IEP+ VT + +LS+C+    +  GL  H   MK    +N        ++++
Sbjct: 301 LFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLA-HFNSMKKIHDMNPGPEHYACMVDL 359

Query: 378 YSKCGSITSSHQIFNEMAARDFVS-WTTLISG---YGFHGYGEEALQLFLEMQESGVEPD 433
             + G +  + +    M  +   S W  L+     YG    G EA +   EM+     P 
Sbjct: 360 LGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEP--YNPG 417

Query: 434 AITVLAILSACNHAGLVKEAETL-----FNNVMKE 463
              +LA  + C  +G ++EA  +      N V KE
Sbjct: 418 NYVLLA--NMCTRSGRLEEANEVRRLMGVNGVRKE 450



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 165/333 (49%), Gaps = 9/333 (2%)

Query: 222 MQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTE 281
           M+  G  P + T + +L A A    + +G+ +H   +  GFD +  +  AL+ MY +C +
Sbjct: 1   MRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCAD 60

Query: 282 ALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSR-MRLERIEPNSVTLLAIL 340
            +H A  +F++   +++V W+S+I G+  +     A+ +F   +R + + PN V++ ++L
Sbjct: 61  -MHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVL 119

Query: 341 SSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFV 400
           S+C     L+ G  VH  ++K GL     + N+LM+MY KC       ++F  +  RD V
Sbjct: 120 SACANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVV 179

Query: 401 SWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNV 460
           +W  L+ G+  +   EEA   F  M+  G+ PD  +   +L +      + +   + + +
Sbjct: 180 TWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQI 239

Query: 461 MKEKKIA-LAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG-RL 518
           +K   +  + I      + +  K G + DA +V   +    +    ++++SA ++HG   
Sbjct: 240 IKLGYVKNMCI--LGSLITMYAKCGSLVDAYQVFEGIE-DHNVISWTAMISAYQLHGCAN 296

Query: 519 EVAEMLAHQLIEA-EPENAANYTLLSMVCSESG 550
           +V E+  H L E  EP +     +LS  CS +G
Sbjct: 297 QVIELFEHMLSEGIEPSHVTFVCVLS-ACSHTG 328


>gi|255542116|ref|XP_002512122.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549302|gb|EEF50791.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 800

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 163/513 (31%), Positives = 288/513 (56%), Gaps = 4/513 (0%)

Query: 65  ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG 124
           ++++L+ MY++     SA ++F  M  R   SW ++I+C+ ++ ++ ++L++F EM    
Sbjct: 237 LNDALVLMYSRCDDFSSAERIFSNMFNRSIASWTAMISCYNRSRWFKQALQVFVEMLEFK 296

Query: 125 FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
               A  +  ++S C+    L  G+ +H   +     +    +  AL++ Y++       
Sbjct: 297 VAPNAVTIMAVLSSCAGFNLLREGKSVHCYAVKHIDLDDDS-LGPALIEYYAQFGKLSYC 355

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
            +V   +  RN +SW  +IS       +   + +F  MQR+G  P   +L+  + ACA +
Sbjct: 356 EKVLHTIGKRNIISWNMLISVYASQGLFKEALGIFVQMQRQGQIPDSFSLSSSISACANV 415

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
             L  G  IHGYA       D  +  +L+ MY +C   +  A +IF+R + K VV W+S+
Sbjct: 416 GLLWLGHQIHGYAIKRHI-LDEFVQNSLIDMYSKCGH-VDLAYLIFDRIQSKSVVAWNSM 473

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
           I G+SQ G+  EA++LF +M L  ++ N VT L  + +C+    L  G  +H  ++  G+
Sbjct: 474 ICGFSQIGNSLEAIRLFDQMYLNCLDMNEVTFLTAIQACSHMGHLEKGKWLHHKLIAYGV 533

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
             D+ I  AL++MY+KCG +  +H++F+ M+ R  VSW+ +I G G HG  + A+ LF E
Sbjct: 534 KKDLFIDTALIDMYAKCGDLRIAHRVFDSMSERSVVSWSAMIGGCGMHGDIDAAISLFAE 593

Query: 425 MQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSG 484
           M +  ++P+ IT + ILSAC+H+G V+E +  FN+ MK  ++   +EH+AC VDLL ++G
Sbjct: 594 MIQREMKPNDITFMNILSACSHSGYVEEGKFYFNS-MKNFEVEPNLEHFACMVDLLSRAG 652

Query: 485 KIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSM 544
            +++A +++++MP      I  +L++ CRIH R+++   +   L++   ++   YTLLS 
Sbjct: 653 DLDEAYRIINSMPFPAEASIWGALLNGCRIHQRMDMIRNIERDLLDMRTDDTGYYTLLSN 712

Query: 545 VCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           + +E GNW  + +V   M+  GL K  G+S IE
Sbjct: 713 IYAEEGNWDVSRKVRSAMKGIGLKKVPGYSTIE 745



 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 162/552 (29%), Positives = 285/552 (51%), Gaps = 12/552 (2%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V  +F  + + LY + ++     S+  I  SV++ACA    +   G ++H   +K G D 
Sbjct: 75  VWSNFCGEAISLYNKMIYKQIPISDF-IFSSVLRACA-GFGNLDVGEEVHGRIIKYGLDV 132

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D V+  SL+ MY       +A ++FD M  RD +SW+SII+C+  NG     LEMFR + 
Sbjct: 133 DHVVETSLLGMYGDLGCLSNAKKVFDNMTTRDLVSWSSIISCYVDNGESSEGLEMFRLLV 192

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
                L +  +  I   C ++G L L + +H   I+    E    ++ AL+ +YS+C  +
Sbjct: 193 SQDVELDSVTMLSIAGACGELGFLRLAKSVHG-CIIRQRIETRGPLNDALVLMYSRCDDF 251

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             A R+F  M  R+  SWTAMIS    S+ +   + +F  M    V P  VT+  VL +C
Sbjct: 252 SSAERIFSNMFNRSIASWTAMISCYNRSRWFKQALQVFVEMLEFKVAPNAVTIMAVLSSC 311

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A    LR GK++H YA       D  L  AL+  Y +  +  +  +++    K ++++ W
Sbjct: 312 AGFNLLREGKSVHCYAVKHIDLDDDSLGPALIEYYAQFGKLSYCEKVLHTIGK-RNIISW 370

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           + +I  Y+  G   EA+ +F +M+ +   P+S +L + +S+C     L  G  +H Y +K
Sbjct: 371 NMLISVYASQGLFKEALGIFVQMQRQGQIPDSFSLSSSISACANVGLLWLGHQIHGYAIK 430

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
             +  D  + N+L++MYSKCG +  ++ IF+ + ++  V+W ++I G+   G   EA++L
Sbjct: 431 RHI-LDEFVQNSLIDMYSKCGHVDLAYLIFDRIQSKSVVAWNSMICGFSQIGNSLEAIRL 489

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK-KIALAIEHYACYVDLL 480
           F +M  + ++ + +T L  + AC+H G +++ + L + ++    K  L I+     +D+ 
Sbjct: 490 FDQMYLNCLDMNEVTFLTAIQACSHMGHLEKGKWLHHKLIAYGVKKDLFID--TALIDMY 547

Query: 481 GKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE--PENAAN 538
            K G +  A +V  +M  + S    S+++  C +HG ++ A  L  ++I+ E  P +   
Sbjct: 548 AKCGDLRIAHRVFDSMSER-SVVSWSAMIGGCGMHGDIDAAISLFAEMIQREMKPNDITF 606

Query: 539 YTLLSMVCSESG 550
             +LS  CS SG
Sbjct: 607 MNILS-ACSHSG 617



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 134/509 (26%), Positives = 245/509 (48%), Gaps = 9/509 (1%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           LH   L +G   DP  S  LI  Y++    +S+  +F+     D+  W  +I C   + F
Sbjct: 20  LHSHLLVTGLHHDPQASTKLIESYSQIGCLQSSKLVFETFQNPDSFMWAVLIKCHVWSNF 79

Query: 110 YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVST 169
              ++ ++ +M      +   + + ++  C+  G L++G ++H  +I  G  ++   V T
Sbjct: 80  CGEAISLYNKMIYKQIPISDFIFSSVLRACAGFGNLDVGEEVHGRIIKYG-LDVDHVVET 138

Query: 170 ALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKP 229
           +LL +Y        A +VF+ M  R+ VSW+++IS  +D+     G+++FR +  + V+ 
Sbjct: 139 SLLGMYGDLGCLSNAKKVFDNMTTRDLVSWSSIISCYVDNGESSEGLEMFRLLVSQDVEL 198

Query: 230 TRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARII 289
             VT+  +  AC EL  LR  K++HG       +    L+ AL+ MY  C +    A  I
Sbjct: 199 DSVTMLSIAGACGELGFLRLAKSVHGCIIRQRIETRGPLNDALVLMYSRCDD-FSSAERI 257

Query: 290 FERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFL 349
           F     + +  W+++I  Y++S    +A+++F  M   ++ PN+VT++A+LSSC   + L
Sbjct: 258 FSNMFNRSIASWTAMISCYNRSRWFKQALQVFVEMLEFKVAPNAVTIMAVLSSCAGFNLL 317

Query: 350 SHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGY 409
             G  VHCY +K     D S+G AL+  Y++ G ++   ++ + +  R+ +SW  LIS Y
Sbjct: 318 REGKSVHCYAVKHIDLDDDSLGPALIEYYAQFGKLSYCEKVLHTIGKRNIISWNMLISVY 377

Query: 410 GFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA 469
              G  +EAL +F++MQ  G  PD+ ++ + +SAC + GL+     +    +K   +   
Sbjct: 378 ASQGLFKEALGIFVQMQRQGQIPDSFSLSSSISACANVGLLWLGHQIHGYAIKRHILDEF 437

Query: 470 IEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLI 529
           +++    +D+  K G ++ A  +   +  K      S +    +I   LE   +     +
Sbjct: 438 VQN--SLIDMYSKCGHVDLAYLIFDRIQSKSVVAWNSMICGFSQIGNSLEAIRLFDQMYL 495

Query: 530 EAEPENAANYTLLSMVCS-----ESGNWL 553
                N   +      CS     E G WL
Sbjct: 496 NCLDMNEVTFLTAIQACSHMGHLEKGKWL 524


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 175/545 (32%), Positives = 293/545 (53%), Gaps = 43/545 (7%)

Query: 60  DADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFRE 119
           D + +  NS+++ Y +  +P+ A  +FD+M  R+TISWN +++ +  NG    + E+F  
Sbjct: 126 DKNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDR 185

Query: 120 M--------------YLC-GFVLKAELL------AGIISLCSQIGEL-ELGRQIHALVIV 157
           M              Y+  G + +AE L        ++S    +G L + GR   A  + 
Sbjct: 186 MPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLF 245

Query: 158 DGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGID 217
           D   E  V   T ++  Y +    + A  +F++M  RN VSWT MI+G + +Q  D    
Sbjct: 246 DMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARK 305

Query: 218 LFRAMQREGVKPTRVTLTIVLLA---CAEL---RDLRNGKAIHGYAYCCGFDFDHHLSAA 271
           LF  M     +   V+ T +L     C  L    +L N   I     C           A
Sbjct: 306 LFEVMP----EKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVAC----------NA 351

Query: 272 LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP 331
           ++  + +  E +  AR +F++ + KD   WS++I+ Y + G   +A++LF  M+ E I P
Sbjct: 352 MILCFGQNGE-VPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRP 410

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIF 391
           N  +L+++LS C   + L HG  +H  ++++  + DV + + L++MY KCG++  + Q+F
Sbjct: 411 NFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVF 470

Query: 392 NEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVK 451
           +  A +D V W ++I+GY  HG G EAL++F +M  SG+ PD +T + +LSAC++ G VK
Sbjct: 471 DRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVK 530

Query: 452 EAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSA 511
           +   +FN++  + ++   IEHYAC VDLLG++GK+ +A  ++  MPM+    I  +L+ A
Sbjct: 531 KGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGA 590

Query: 512 CRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSY 571
           CR H +L++AE+ A +L+  EP+NA  + LLS + +  G W    E+ R MR + +SK  
Sbjct: 591 CRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYP 650

Query: 572 GFSRI 576
           G S I
Sbjct: 651 GCSWI 655



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 117/399 (29%), Positives = 184/399 (46%), Gaps = 55/399 (13%)

Query: 52  CTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYV 111
           C       + D V   ++I  Y +  +   A  LFDEMP R+ +SW ++I  + QN    
Sbjct: 242 CRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVD 301

Query: 112 RSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL-ELGRQIHALVIVDGSFELSVFVSTA 170
            + ++F  M     V    +L G  + C ++ E  EL    +A+ I       SV    A
Sbjct: 302 IARKLFEVMPEKNEVSWTAMLKGYTN-CGRLDEASEL---FNAMPIK------SVVACNA 351

Query: 171 LLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPT 230
           ++  + +      A +VF+QM  ++E +W+AMI            ++LFR MQREG++P 
Sbjct: 352 MILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPN 411

Query: 231 RVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIF 290
             +L  VL  CA L +L +G+ IH       FD D ++++ L+ MY +C   L  A+ +F
Sbjct: 412 FPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGN-LAKAKQVF 470

Query: 291 ERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLS 350
           +R  VKDVV+W+SII GY+Q G   EA+++F  M    I P+ VT + +LS+C       
Sbjct: 471 DRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSAC------- 523

Query: 351 HGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS-----WTTL 405
                                       S  G++    +IFN M  +  V      +  +
Sbjct: 524 ----------------------------SYTGNVKKGLEIFNSMETKYQVEQKIEHYACM 555

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
           +   G  G   EA+ L  +M    +E DAI   A+L AC
Sbjct: 556 VDLLGRAGKLNEAMDLIEKMP---MEADAIIWGALLGAC 591



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 94/198 (47%), Gaps = 3/198 (1%)

Query: 10  TLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSL 69
            L L++  +   G+  N   L SV+  CA      H G ++H   ++S  D D  +++ L
Sbjct: 396 ALELFRM-MQREGIRPNFPSLISVLSVCAGLANLDH-GREIHAQLVRSQFDLDVYVASVL 453

Query: 70  ISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKA 129
           +SMY K      A Q+FD    +D + WNSII  + Q+G  V +L +F +M+  G +   
Sbjct: 454 LSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDD 513

Query: 130 ELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
               G++S CS  G ++ G +I   +      E  +     ++DL  +      A+ + E
Sbjct: 514 VTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIE 573

Query: 190 QMVIR-NEVSWTAMISGC 206
           +M +  + + W A++  C
Sbjct: 574 KMPMEADAIIWGALLGAC 591



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 73/340 (21%), Positives = 151/340 (44%), Gaps = 46/340 (13%)

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
           YC  F    +   +L+  Y    + +  AR++F+  + K+++ W+SI+ GY Q+    EA
Sbjct: 93  YCSNFIISRN---SLITRYSRLGQ-IEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEA 148

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
             +F +M     E N+++   ++S       ++    V   + +     +V    A++  
Sbjct: 149 QNMFDKMS----ERNTISWNGLVSGYINNGMINEAREVFDRMPER----NVVSWTAMVRG 200

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           Y K G I+ +  +F +M  ++ VSWT ++ G    G  +EA +LF  M E     D +T 
Sbjct: 201 YVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEK----DVVTR 256

Query: 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALA--IEHYA--CYVDLLGK----------- 482
             ++      G + EA  LF+ + +   ++    I  Y     VD+  K           
Sbjct: 257 TNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEV 316

Query: 483 -----------SGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA 531
                       G++++A ++ + MP+K S    ++++     +G +  A  +  Q+ E 
Sbjct: 317 SWTAMLKGYTNCGRLDEASELFNAMPIK-SVVACNAMILCFGQNGEVPKARQVFDQMRE- 374

Query: 532 EPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSY 571
             ++   ++ +  V    G  L A E++R+M+ +G+  ++
Sbjct: 375 --KDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNF 412


>gi|297607519|ref|NP_001060096.2| Os07g0578800 [Oryza sativa Japonica Group]
 gi|255677918|dbj|BAF22010.2| Os07g0578800 [Oryza sativa Japonica Group]
          Length = 967

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 167/505 (33%), Positives = 276/505 (54%), Gaps = 26/505 (5%)

Query: 96  SWNSIINCFTQNGFYVRSLEMFREMYLC---GFVLKAELLAGIISLCSQIGELELGRQIH 152
           SW   I      G ++ ++ +F +M         + A L A + S C+ +G   L   +H
Sbjct: 331 SWAYQIRMAASQGQFLHAISLFLQMRASVAPRSSVPASLPAALKS-CAGLGLCTLAASLH 389

Query: 153 ALVIVDGSFELSVFVSTALLDLYSKC---HH-----------------WLIALRVFEQMV 192
           AL I  GSF    F + ALL+L  K    HH                 +    +VF++M+
Sbjct: 390 ALAIRSGSFA-DRFTANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFDEML 448

Query: 193 IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKA 252
            R+ VSW  +I GC + + +   + + R M R+G  P   TL+ VL   AE  D++ G  
Sbjct: 449 ERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGMV 508

Query: 253 IHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSG 312
           +HGYA   GFD D  + ++L+ MY  CT+  +  ++ F+     D V+W+S++ GY+Q+G
Sbjct: 509 VHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKV-FDSFSDCDAVLWNSMLAGYAQNG 567

Query: 313 DLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN 372
            + EA+ +F RM    + P  VT  +++ +    S L  G  +H Y+++A  N ++ I +
Sbjct: 568 SVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISS 627

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
           +L++MY KCG++  + ++FN + + D VSWT +I GY  HG   EA  LF  M+   V+P
Sbjct: 628 SLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNVKP 687

Query: 433 DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKV 492
           + IT LA+L+AC+HAGLV      FN++  +     ++EH A   D LG++G +++A   
Sbjct: 688 NHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEAYNF 747

Query: 493 VSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNW 552
           +S M +KP++ + S+L+ ACR+H    +AE +A ++ E EP++  ++ +LS + S SG W
Sbjct: 748 ISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPKSMGSHVILSNMYSASGRW 807

Query: 553 LGAEEVWRVMRAKGLSKSYGFSRIE 577
             A ++ + MR KG+ K    S IE
Sbjct: 808 NEAAQLRKSMRIKGMKKEPACSWIE 832



 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 129/449 (28%), Positives = 227/449 (50%), Gaps = 45/449 (10%)

Query: 25  SNTAILPSVIKACAYAQTHQHFGL-----QLHCTALKSGSDADPVISNSLISMYAK---F 76
           S  A LP+ +K+CA        GL      LH  A++SGS AD   +N+L+++  K   F
Sbjct: 364 SVPASLPAALKSCA------GLGLCTLAASLHALAIRSGSFADRFTANALLNLCIKLPGF 417

Query: 77  SKP-----------------ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFRE 119
             P                 ES  ++FDEM  RD +SWN++I    ++  +  +L M RE
Sbjct: 418 HHPFGTNGPSGEGGLESAAYESMRKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVRE 477

Query: 120 MYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH 179
           M+  GF+     L+ ++ + ++  +++ G  +H   I +G F+  VFV ++L+D+Y+ C 
Sbjct: 478 MWRDGFMPDTFTLSTVLPIFAECADIKRGMVVHGYAIKNG-FDNDVFVGSSLIDMYANCT 536

Query: 180 HWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLL 239
               +++VF+     + V W +M++G   + + +  + +FR M + GV+P  VT + ++ 
Sbjct: 537 QMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIP 596

Query: 240 ACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVV 299
           A   L  LR GK +H Y     F+ +  +S++L+ MYC+C   +  AR +F   +  D+V
Sbjct: 597 AFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGN-VDIARRVFNGIQSPDIV 655

Query: 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
            W+++I GY+  G  +EA  LF RM L  ++PN +T LA+L++C+    + +G   +   
Sbjct: 656 SWTAMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWK-YFNS 714

Query: 360 MKAGLNFDVSIGN--ALMNMYSKCGSITSSHQIFNEMAARDFVS-WTTLISGYGFHG--- 413
           M     F  S+ +  AL +   + G +  ++   +EM  +   S W+TL+     H    
Sbjct: 715 MSNQYGFVPSLEHCAALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLLRACRVHKNTV 774

Query: 414 YGEEALQLFLEMQESGVEPDAITVLAILS 442
             EE  +   E+     EP ++    ILS
Sbjct: 775 LAEEVAKKIFEL-----EPKSMGSHVILS 798



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 102/383 (26%), Positives = 169/383 (44%), Gaps = 45/383 (11%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           +E+   G   +T  L +V+   A     +  G+ +H  A+K+G D D  + +SLI MYA 
Sbjct: 476 REMWRDGFMPDTFTLSTVLPIFAECADIKR-GMVVHGYAIKNGFDNDVFVGSSLIDMYAN 534

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
            ++ + + ++FD     D + WNS++  + QNG    +L +FR M   G        + +
Sbjct: 535 CTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSL 594

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           I     +  L LG+Q+HA +I    F  ++F+S++L+D+Y KC +  IA RVF  +   +
Sbjct: 595 IPAFGNLSLLRLGKQLHAYLI-RARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPD 653

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
            VSWTAMI G            LF  M+   VKP  +T   VL AC+       G   +G
Sbjct: 654 IVSWTAMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHA-----GLVDNG 708

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
           + Y       +    +L H  C                        +++     ++GDL 
Sbjct: 709 WKYFNSMSNQYGFVPSLEH--C------------------------AALADTLGRAGDLD 742

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCT--RQSFLSHGLGVHCYIMKAGLNFDVSIGN- 372
           EA    S M   +I+P S     +L +C   + + L+  +    + ++       S+G+ 
Sbjct: 743 EAYNFISEM---KIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPK-----SMGSH 794

Query: 373 -ALMNMYSKCGSITSSHQIFNEM 394
             L NMYS  G    + Q+   M
Sbjct: 795 VILSNMYSASGRWNEAAQLRKSM 817


>gi|326522859|dbj|BAJ88475.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 691

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 172/533 (32%), Positives = 272/533 (51%), Gaps = 9/533 (1%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G Q+H  A+++G   D  + + L+ +YA+     +A  +   M   D +++ S+++   +
Sbjct: 116 GEQVHSLAVRAGFVGDAWVGSCLVELYARCGSTRAAEAVLARMESPDVVAYTSLVSALCR 175

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           +G +  + E   +M   G +     +  I++ C     L LG QIH  +I    F  SV+
Sbjct: 176 SGEFGMAAEALGQMMGHGVMPNEHTVTSILAACC---PLVLGVQIHGYMIKAMGFSQSVY 232

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
            S+ L+D YS+   + +A  VF+ +  +N V+W  M+   I     +  + LF  M  EG
Sbjct: 233 TSSTLVDFYSRNGEFDMAKTVFDNLQCKNVVTWCTMMQLHIRDGRPEDALQLFDEMISEG 292

Query: 227 V-KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
           V  P     +I L AC     +  G  +H  A   G      +S AL+ MY      +  
Sbjct: 293 VVSPNEFAFSIALGAC---ESIALGSQLHSLAIKHGLASHLRVSNALLSMYGRIG-LVQQ 348

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
              +F   +  D+V W++ I  Y Q+G   +A+ L SRM  + + PN     ++LSSC  
Sbjct: 349 LEAMFRGIEDPDIVSWTAAISAYFQNGHGEKAIALLSRMHSQGLTPNDYAFSSVLSSCAD 408

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
            + L  G   HC  +K G +     GNAL+NMYSKCG I  +   F+ M  RD  SW +L
Sbjct: 409 LALLDQGRQFHCLALKLGCDVKTCTGNALINMYSKCGQIVPARLAFDIMDHRDVTSWNSL 468

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKE-K 464
           I G+  HG  +  L+ F EM  +G EP+  T+L +L+ACNHAGLV E    F + M    
Sbjct: 469 IHGHAQHGEVDMVLKAFSEMCSNGGEPNESTLLGVLAACNHAGLVDEGVAFFRSAMAGLY 528

Query: 465 KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEML 524
              L   HYAC VD+LG+SG+ +DA  ++  MP +P   +  +L+++CR+HG LE   + 
Sbjct: 529 GTFLTPPHYACMVDMLGRSGRFDDALCLIEEMPFEPGVLVWKTLLASCRLHGNLETGRLA 588

Query: 525 AHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           A +L+E   +++A+Y L+S + +  G W  A+ V R M   G+ K  G S +E
Sbjct: 589 AEKLVELSDQDSASYVLMSGIHAMHGEWRDADMVRRRMDEAGVRKEAGRSWVE 641



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 109/383 (28%), Positives = 182/383 (47%), Gaps = 12/383 (3%)

Query: 75  KFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK--AELL 132
           K  +   A  LFD MP ++ ++W S ++  T+NG    + EMF +M   G  L   A   
Sbjct: 41  KAGRVADALDLFDRMPRKNVVAWTSAVSGLTRNGRPEAAGEMFADMVESGVALNDFACNA 100

Query: 133 AGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV 192
           A      +  G L  G Q+H+L +  G F    +V + L++LY++C     A  V  +M 
Sbjct: 101 ALAACAAAGPGALRTGEQVHSLAVRAG-FVGDAWVGSCLVELYARCGSTRAAEAVLARME 159

Query: 193 IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKA 252
             + V++T+++S    S  +    +    M   GV P   T+T +L AC     L  G  
Sbjct: 160 SPDVVAYTSLVSALCRSGEFGMAAEALGQMMGHGVMPNEHTVTSILAACCP---LVLGVQ 216

Query: 253 IHGYAY-CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQS 311
           IHGY     GF    + S+ L+  Y    E    A+ +F+  + K+VV W ++++ + + 
Sbjct: 217 IHGYMIKAMGFSQSVYTSSTLVDFYSRNGE-FDMAKTVFDNLQCKNVVTWCTMMQLHIRD 275

Query: 312 GDLSEAMKLFSRMRLER-IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSI 370
           G   +A++LF  M  E  + PN       L +C     ++ G  +H   +K GL   + +
Sbjct: 276 GRPEDALQLFDEMISEGVVSPNEFAFSIALGACES---IALGSQLHSLAIKHGLASHLRV 332

Query: 371 GNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV 430
            NAL++MY + G +     +F  +   D VSWT  IS Y  +G+GE+A+ L   M   G+
Sbjct: 333 SNALLSMYGRIGLVQQLEAMFRGIEDPDIVSWTAAISAYFQNGHGEKAIALLSRMHSQGL 392

Query: 431 EPDAITVLAILSACNHAGLVKEA 453
            P+     ++LS+C    L+ + 
Sbjct: 393 TPNDYAFSSVLSSCADLALLDQG 415



 Score = 42.7 bits (99), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 91/198 (45%), Gaps = 15/198 (7%)

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPD--AITV 437
           K G +  +  +F+ M  ++ V+WT+ +SG   +G  E A ++F +M ESGV  +  A   
Sbjct: 41  KAGRVADALDLFDRMPRKNVVAWTSAVSGLTRNGRPEAAGEMFADMVESGVALNDFACNA 100

Query: 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
                A    G ++  E + +  ++   +  A    +C V+L  + G    A  V++ M 
Sbjct: 101 ALAACAAAGPGALRTGEQVHSLAVRAGFVGDAWVG-SCLVELYARCGSTRAAEAVLARME 159

Query: 498 MKPSTRILSSLVSACRIHGRLEVA-----EMLAHQLIEAEPENAANYTLLSMVCSESGNW 552
             P     +SLVSA    G   +A     +M+ H ++  E      +T+ S++ +     
Sbjct: 160 -SPDVVAYTSLVSALCRSGEFGMAAEALGQMMGHGVMPNE------HTVTSILAACCPLV 212

Query: 553 LGAEEVWRVMRAKGLSKS 570
           LG +    +++A G S+S
Sbjct: 213 LGVQIHGYMIKAMGFSQS 230


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 169/555 (30%), Positives = 299/555 (53%), Gaps = 5/555 (0%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           + A L +V+  CA  +     G  +H  A+K   D + V++N+L+ MY+K      A  +
Sbjct: 288 DVATLATVLPVCARDR-EIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVI 346

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE--LLAGIISLCSQIG 143
           F     ++ +SWN+++  F+  G   ++ ++ R+M   G  L+A+   +   + +C +  
Sbjct: 347 FKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVCFEES 406

Query: 144 ELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMI 203
            L   +++H   +       +  V+ A +  Y+KC     A RVF  +  +   SW A+I
Sbjct: 407 VLPNLKELHCYSLKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALI 466

Query: 204 SGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFD 263
            G   S +    +D +  M+  G+ P   T+  +L AC++++ L+ GK +HG       +
Sbjct: 467 GGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNRLE 526

Query: 264 FDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSR 323
            D  +  +L+ +Y  C E L  A ++F+  + K +V W++++ GY Q+G    A+ LF +
Sbjct: 527 RDSFVYISLLSLYIHCGE-LSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERALSLFRQ 585

Query: 324 MRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS 383
           M L  ++P  ++++++  +C+    L  G   H Y +K  L  +  I  ++++MY+K GS
Sbjct: 586 MVLYGVQPCEISMMSVFGACSLLPSLRLGREAHGYALKCLLEDNAFIACSVIDMYAKNGS 645

Query: 384 ITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
           +  S ++FN +  R   SW  ++ GYG HG  +EA++LF EMQ +G  PD +T L +L+A
Sbjct: 646 VMESFKVFNGLKERSVASWNAMVMGYGIHGRAKEAIKLFEEMQRTGHCPDELTFLGVLTA 705

Query: 444 CNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS-TMPMKPST 502
           CNH+GLV E  T  + +     +   ++HYAC +D+L ++GK+++A K+ +  M  +P  
Sbjct: 706 CNHSGLVHEGLTYLDQMKTLFGMNPTLKHYACVIDMLVRAGKLDEALKIATEEMSEEPGV 765

Query: 503 RILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVM 562
            I + L+S+CRIH  LE+ E +A +L  +EPE   NY LLS + + SG W    +V + M
Sbjct: 766 GIWNFLLSSCRIHKNLEMGEKIAAKLFVSEPEKPENYVLLSNLYAGSGKWDEVRKVRQRM 825

Query: 563 RAKGLSKSYGFSRIE 577
           +   L K  G S IE
Sbjct: 826 KEMSLRKDAGCSWIE 840



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 152/533 (28%), Positives = 268/533 (50%), Gaps = 18/533 (3%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
            Y   L ++ + +  SGL  +    P V+KACA     Q  GL +H   +K+    D  +
Sbjct: 163 LYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQ-VGLAVHGLVVKTRLVEDVFV 221

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF----YVRSLEMFREMY 121
           SN+L+S Y        A ++F  MP R+ +SWNS+I  F+ NG     ++   +M  +  
Sbjct: 222 SNALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDD 281

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
              F      LA ++ +C++  E+ +G+ +H L +   S +  V V+ AL+D+YSKC   
Sbjct: 282 EIAFTPDVATLATVLPVCARDREIGVGKGVHGLAM-KLSLDKEVVVNNALMDMYSKCGCI 340

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG--VKPTRVTLTIVLL 239
             A  +F+    +N VSW  M+ G   + +     DL R M   G  ++   VT+   + 
Sbjct: 341 NDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVP 400

Query: 240 ACAELRDLRNGKAIHGYAYCCGFDFDHHLSA-ALMHMYCECTEALHPARIIFERTKVKDV 298
            C E   L N K +H Y+    F  ++ L A A +  Y +C  +L  A  +F   + K V
Sbjct: 401 VCFEESVLPNLKELHCYSLKQEFVHNNELVANAFVASYAKCG-SLSYAHRVFCSIRSKTV 459

Query: 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCY 358
             W+++I GYSQS D   ++  + +M+   + P+  T+ ++LS+C++   L  G  VH  
Sbjct: 460 NSWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGL 519

Query: 359 IMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEA 418
           I++  L  D  +  +L+++Y  CG ++++H +F+ M  +  VSW T+++GY  +G+ E A
Sbjct: 520 IIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERA 579

Query: 419 LQLFLEMQESGVEPDAITVLAILSACN---HAGLVKEAETLFNNVMKEKKIALAIEHYAC 475
           L LF +M   GV+P  I+++++  AC+      L +EA       + E    +A      
Sbjct: 580 LSLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLGREAHGYALKCLLEDNAFIA----CS 635

Query: 476 YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
            +D+  K+G + ++ KV + +  + S    +++V    IHGR + A  L  ++
Sbjct: 636 VIDMYAKNGSVMESFKVFNGLKER-SVASWNAMVMGYGIHGRAKEAIKLFEEM 687



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 120/411 (29%), Positives = 217/411 (52%), Gaps = 10/411 (2%)

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D V+   +I+MY+    P+ +  +FD +  ++   WN++I+ +++N  Y   LEMF +M 
Sbjct: 116 DDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFVKMI 175

Query: 122 L-CGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
              G +        ++  C+ + E+++G  +H LV+     E  VFVS AL+  Y     
Sbjct: 176 TESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVE-DVFVSNALVSFYGTNGS 234

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQ-NYDTGIDLFRAMQRE---GVKPTRVTLTI 236
              ALRVF+ M  RN VSW +MI    D+  + +  + L + M+++      P   TL  
Sbjct: 235 VSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLAT 294

Query: 237 VLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK 296
           VL  CA  R++  GK +HG A     D +  ++ ALM MY +C   ++ A++IF+    K
Sbjct: 295 VLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCG-CINDAQVIFKLNNNK 353

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRL--ERIEPNSVTLLAILSSCTRQSFLSHGLG 354
           +VV W++++ G+S +GD+ +   L  +M      +  + VT+L  +  C  +S L +   
Sbjct: 354 NVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVCFEESVLPNLKE 413

Query: 355 VHCYIMKAG-LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHG 413
           +HCY +K   ++ +  + NA +  Y+KCGS++ +H++F  + ++   SW  LI GY    
Sbjct: 414 LHCYSLKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQSS 473

Query: 414 YGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK 464
               +L  + +M+ SG+ PD  TV ++LSAC+    +K  + +   +++ +
Sbjct: 474 DPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNR 524



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 152/311 (48%), Gaps = 14/311 (4%)

Query: 144 ELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMI 203
           +++LGR+IH LV           + T ++ +YS C     +  VF+ +  +N   W A+I
Sbjct: 96  DIQLGRKIHQLVSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVI 155

Query: 204 SGCIDSQNYDTGIDLFRAMQRE-GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGF 262
           S    ++ Y   +++F  M  E G+ P   T   V+ ACA + +++ G A+HG       
Sbjct: 156 SSYSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRL 215

Query: 263 DFDHHLSAALMHMYC---ECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
             D  +S AL+  Y      ++AL   +I+ ER    ++V W+S+IR +S +G   E   
Sbjct: 216 VEDVFVSNALVSFYGTNGSVSDALRVFKIMPER----NLVSWNSMIRVFSDNGLSEECFL 271

Query: 320 LFSRMRLERIE----PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           L  +M  +  E    P+  TL  +L  C R   +  G GVH   MK  L+ +V + NALM
Sbjct: 272 LLGQMMEKDDEIAFTPDVATLATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNALM 331

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG--VEPD 433
           +MYSKCG I  +  IF     ++ VSW T++ G+   G   +   L  +M   G  +  D
Sbjct: 332 DMYSKCGCINDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRAD 391

Query: 434 AITVLAILSAC 444
            +T+L  +  C
Sbjct: 392 EVTILNAVPVC 402


>gi|242066372|ref|XP_002454475.1| hypothetical protein SORBIDRAFT_04g031840 [Sorghum bicolor]
 gi|241934306|gb|EES07451.1| hypothetical protein SORBIDRAFT_04g031840 [Sorghum bicolor]
          Length = 706

 Score =  293 bits (749), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 184/564 (32%), Positives = 297/564 (52%), Gaps = 45/564 (7%)

Query: 25  SNTAILP------SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSK 78
           S+ A+ P      +V++AC  A+  +  G  +H   +  G   DP +  SL++MYAK   
Sbjct: 128 SDAAVRPNEFTAAAVLQACGLARD-ERLGRMVHGYLVAGGFCGDPFVVGSLVNMYAKAGD 186

Query: 79  PESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISL 138
             SA +L   +P RD +SW +II+    NG     LE+F  M   G +     +  +I  
Sbjct: 187 VVSARRLVLGLPCRDVVSWTAIISGCVLNGMLEEGLEVFVMMLEDGVLPNNVTMLSVIQA 246

Query: 139 CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
           CS +G  EL   +HALV++    E    V  +L+ +Y+K                     
Sbjct: 247 CSLMGASELFSPVHALVVLL-ELEHDASVVNSLIMMYAK--------------------- 284

Query: 199 WTAMISGCIDSQNYDTGIDLFRA--MQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
                +G ++       I LFR   ++   V      L  VL  C     ++NG  +H +
Sbjct: 285 -----NGFVEE-----AIWLFRGFYLKSGNVCSNEDVLAAVLYGCTISGSVKNGVGVHAH 334

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
               G      +  +LM MY    E +  A  +FE  KVKD+V W++II   ++S  ++E
Sbjct: 335 TIKIGAFPSISIENSLMGMYAR-FEQIDAAHFVFEGMKVKDIVSWNTIISCLAKSDRVNE 393

Query: 317 AMKLFSRMRLER--IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
           AM+LFS +      + P+ VT+L+IL +C+    L  G  +H YIMK+G  +DVSI NAL
Sbjct: 394 AMELFSVLHAAAGGLAPDFVTVLSILQACSNAGLLHQGQMLHGYIMKSGFVYDVSICNAL 453

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE-PD 433
           + MY+K G I  +  IF  M  +D VSW ++I+ YG HG G  AL++F +++++G   P+
Sbjct: 454 ITMYAKLGRIDFAEMIFERMDIKDLVSWNSMINAYGMHGDGHLALRVFHQLKDAGTPVPN 513

Query: 434 AITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVV 493
           AIT ++++SAC+H+GL+ E    F ++ ++  I  +++HYAC VDLLG+SG+  +A + +
Sbjct: 514 AITFVSVISACSHSGLISEGYKCFESMGRDHSIEPSMDHYACVVDLLGRSGRFAEAEEFI 573

Query: 494 STMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWL 553
             MP+ P++ I   L++AC++HG +++AE  A +L   EPE+      LS   + +G W 
Sbjct: 574 RDMPVHPNSSIWGPLLAACQLHGNVDLAEKAAKELSALEPESDIWRVSLSNTYASAGRWR 633

Query: 554 GAEEVWRVMRAKGLSKSYGFSRIE 577
            A ++   MR  GL K  G+S ++
Sbjct: 634 DAAKIRTEMRRVGLRKETGWSFVD 657



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 149/516 (28%), Positives = 245/516 (47%), Gaps = 50/516 (9%)

Query: 50  LHCTALKSGSDADP----VISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT 105
           LH   LKSG+   P      +NSL+  Y +      A +L D  P RD  ++ S+I+   
Sbjct: 48  LHAALLKSGALRSPQAPLAATNSLLHAYLQCGLLSRALRLLDGTPRRDAATYASLISAHC 107

Query: 106 QNGFYVRSLEMFREMYLCG----FVLKAELLAG-IISLCSQIGELELGRQIHALVIVDGS 160
           + G  + +L  F +M   G     V   E  A  ++  C    +  LGR +H   +V G 
Sbjct: 108 RLGAPLDALRAFLDMLDWGCSDAAVRPNEFTAAAVLQACGLARDERLGRMVHGY-LVAGG 166

Query: 161 FELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFR 220
           F    FV  +L+++Y+K    + A R+   +  R+ VSWTA+ISGC+ +   + G+++F 
Sbjct: 167 FCGDPFVVGSLVNMYAKAGDVVSARRLVLGLPCRDVVSWTAIISGCVLNGMLEEGLEVFV 226

Query: 221 AMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECT 280
            M  +GV P  VT+  V+ AC+                              +    E  
Sbjct: 227 MMLEDGVLPNNVTMLSVIQACS------------------------------LMGASELF 256

Query: 281 EALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE--RIEPNSVTLLA 338
             +H   ++ E      VV  +S+I  Y+++G + EA+ LF    L+   +  N   L A
Sbjct: 257 SPVHALVVLLELEHDASVV--NSLIMMYAKNGFVEEAIWLFRGFYLKSGNVCSNEDVLAA 314

Query: 339 ILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARD 398
           +L  CT    + +G+GVH + +K G    +SI N+LM MY++   I ++H +F  M  +D
Sbjct: 315 VLYGCTISGSVKNGVGVHAHTIKIGAFPSISIENSLMGMYARFEQIDAAHFVFEGMKVKD 374

Query: 399 FVSWTTLISGYGFHGYGEEALQLF--LEMQESGVEPDAITVLAILSACNHAGLVKEAETL 456
            VSW T+IS         EA++LF  L     G+ PD +TVL+IL AC++AGL+ + + L
Sbjct: 375 IVSWNTIISCLAKSDRVNEAMELFSVLHAAAGGLAPDFVTVLSILQACSNAGLLHQGQML 434

Query: 457 FNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG 516
              +MK   +   +      + +  K G+I+ A  +   M +K      +S+++A  +HG
Sbjct: 435 HGYIMKSGFV-YDVSICNALITMYAKLGRIDFAEMIFERMDIKDLVS-WNSMINAYGMHG 492

Query: 517 RLEVAEMLAHQLIEAEPENAANYTLLSMV--CSESG 550
              +A  + HQL +A        T +S++  CS SG
Sbjct: 493 DGHLALRVFHQLKDAGTPVPNAITFVSVISACSHSG 528



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 157/338 (46%), Gaps = 19/338 (5%)

Query: 6   FYEQTLHLYKQELHPSG-LYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPV 64
           F E+ + L++     SG + SN  +L +V+  C  + + ++ G+ +H   +K G+     
Sbjct: 287 FVEEAIWLFRGFYLKSGNVCSNEDVLAAVLYGCTISGSVKN-GVGVHAHTIKIGAFPSIS 345

Query: 65  ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG 124
           I NSL+ MYA+F + ++A+ +F+ M  +D +SWN+II+C  ++     ++E+F  ++   
Sbjct: 346 IENSLMGMYARFEQIDAAHFVFEGMKVKDIVSWNTIISCLAKSDRVNEAMELFSVLHAAA 405

Query: 125 FVLKAELLA--GIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL 182
             L  + +    I+  CS  G L  G+ +H  ++  G F   V +  AL+ +Y+K     
Sbjct: 406 GGLAPDFVTVLSILQACSNAGLLHQGQMLHGYIMKSG-FVYDVSICNALITMYAKLGRID 464

Query: 183 IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK-PTRVTLTIVLLAC 241
            A  +FE+M I++ VSW +MI+      +    + +F  ++  G   P  +T   V+ AC
Sbjct: 465 FAEMIFERMDIKDLVSWNSMINAYGMHGDGHLALRVFHQLKDAGTPVPNAITFVSVISAC 524

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVV-- 299
           +      +G    GY        DH +  ++ H  C         R       ++D+   
Sbjct: 525 SH-----SGLISEGYKCFESMGRDHSIEPSMDHYACVVDLLGRSGRFAEAEEFIRDMPVH 579

Query: 300 ----IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNS 333
               IW  ++      G++  A K  +   L  +EP S
Sbjct: 580 PNSSIWGPLLAACQLHGNVDLAEK--AAKELSALEPES 615


>gi|326487167|dbj|BAJ89568.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 691

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 172/533 (32%), Positives = 272/533 (51%), Gaps = 9/533 (1%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G Q+H  A+++G   D  + + L+ +YA+     +A  +   M   D +++ S+++   +
Sbjct: 116 GEQVHSLAVRAGFVGDAWVGSCLVELYARCGSTRAAEAVLARMESPDVVAYTSLVSALCR 175

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           +G +  + E   +M   G +     +  I++ C     L LG QIH  +I    F  SV+
Sbjct: 176 SGEFGMAAEALGQMMGHGVMPNEHTVTSILAACC---PLVLGVQIHGYMIKAMGFSQSVY 232

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
            S+ L+D YS+   + +A  VF+ +  +N V+W  M+   I     +  + LF  M  EG
Sbjct: 233 TSSTLVDFYSRNGEFDMAKTVFDNLQCKNVVTWCTMMQLHIRDGRPEDALQLFDEMISEG 292

Query: 227 V-KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
           V  P     +I L AC     +  G  +H  A   G      +S AL+ MY      +  
Sbjct: 293 VVSPNEFAFSIALGAC---ESIALGSQLHSLAIKHGLASHLRVSNALLSMYGRIG-LVQQ 348

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
              +F   +  D+V W++ I  Y Q+G   +A+ L SRM  + + PN     ++LSSC  
Sbjct: 349 LEAMFRGIEDPDIVSWTAAISAYFQNGHGEKAIALLSRMHSQGLTPNDYAFSSVLSSCAD 408

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
            + L  G   HC  +K G +     GNAL+NMYSKCG I  +   F+ M  RD  SW +L
Sbjct: 409 LALLDQGRQFHCLALKLGCDVKTCTGNALINMYSKCGQIVPARLAFDIMDHRDVTSWNSL 468

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKE-K 464
           I G+  HG  +  L+ F EM  +G EP+  T+L +L+ACNHAGLV E    F + M    
Sbjct: 469 IHGHAQHGEVDMVLKAFSEMCSNGGEPNESTLLGVLAACNHAGLVDEGVAFFRSAMAGLY 528

Query: 465 KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEML 524
              L   HYAC VD+LG+SG+ +DA  ++  MP +P   +  +L+++CR+HG LE   + 
Sbjct: 529 GTFLTPPHYACMVDMLGRSGRFDDALCLIEEMPFEPGVLVWKTLLASCRLHGNLETGRLA 588

Query: 525 AHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           A +L+E   +++A+Y L+S + +  G W  A+ V R M   G+ K  G S +E
Sbjct: 589 AEKLVELSDQDSASYVLMSGIHAMHGEWRDADMVRRRMDEAGVRKEAGRSWVE 641



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 109/383 (28%), Positives = 182/383 (47%), Gaps = 12/383 (3%)

Query: 75  KFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK--AELL 132
           K  +   A  LFD MP ++ ++W S ++  T+NG    + EMF +M   G  L   A   
Sbjct: 41  KAGRVADALDLFDRMPRKNVVAWTSAVSGLTRNGRPEAAGEMFADMVESGVALNDFACNA 100

Query: 133 AGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV 192
           A      +  G L  G Q+H+L +  G F    +V + L++LY++C     A  V  +M 
Sbjct: 101 ALAACAAAGPGALRTGEQVHSLAVRAG-FVGDAWVGSCLVELYARCGSTRAAEAVLARME 159

Query: 193 IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKA 252
             + V++T+++S    S  +    +    M   GV P   T+T +L AC     L  G  
Sbjct: 160 SPDVVAYTSLVSALCRSGEFGMAAEALGQMMGHGVMPNEHTVTSILAACCP---LVLGVQ 216

Query: 253 IHGYAY-CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQS 311
           IHGY     GF    + S+ L+  Y    E    A+ +F+  + K+VV W ++++ + + 
Sbjct: 217 IHGYMIKAMGFSQSVYTSSTLVDFYSRNGE-FDMAKTVFDNLQCKNVVTWCTMMQLHIRD 275

Query: 312 GDLSEAMKLFSRMRLER-IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSI 370
           G   +A++LF  M  E  + PN       L +C     ++ G  +H   +K GL   + +
Sbjct: 276 GRPEDALQLFDEMISEGVVSPNEFAFSIALGACES---IALGSQLHSLAIKHGLASHLRV 332

Query: 371 GNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV 430
            NAL++MY + G +     +F  +   D VSWT  IS Y  +G+GE+A+ L   M   G+
Sbjct: 333 SNALLSMYGRIGLVQQLEAMFRGIEDPDIVSWTAAISAYFQNGHGEKAIALLSRMHSQGL 392

Query: 431 EPDAITVLAILSACNHAGLVKEA 453
            P+     ++LS+C    L+ + 
Sbjct: 393 TPNDYAFSSVLSSCADLALLDQG 415


>gi|297843412|ref|XP_002889587.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335429|gb|EFH65846.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 558

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 171/539 (31%), Positives = 300/539 (55%), Gaps = 9/539 (1%)

Query: 45  HFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMP--YRDTISWNSIIN 102
           H   Q+H   +  G   + V+ +SL + Y + ++ + A   FD +P   R+  SWN+I++
Sbjct: 21  HHTQQVHAKVIIHGFQDEVVLGSSLTNAYIQSNRLDFATASFDRIPCWKRNRHSWNTILS 80

Query: 103 CFTQNG--FYVRSLEMFREMYL-CGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDG 159
            ++++   +Y   L ++  M   C  V    L+  I + C  +G LE G  IH L + +G
Sbjct: 81  GYSKSKSCYYSDVLLLYNRMRRHCDGVDSFNLVFAIKA-CVGLGLLENGMLIHGLAMKNG 139

Query: 160 SFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLF 219
             +   +V+ +L+++Y++      A +VF++M +RN V W  ++ G +          LF
Sbjct: 140 -LDKDDYVAPSLVEMYAQFGTMESAQKVFDEMPVRNSVLWGVLMKGYLKYSKDSEVFRLF 198

Query: 220 RAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGF-DFDHHLSAALMHMYCE 278
             M+  G+    +TL  ++ AC  +   + GK +HG +    F D   +L A+++ MY +
Sbjct: 199 YLMRDTGLALDALTLICLVKACGNVSAGKEGKCVHGLSIRRSFIDQSGYLEASIIDMYVK 258

Query: 279 CTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLA 338
           C   L  AR +FE +  ++VV+W+++I G+++     EA+ LF +M  E I PN  TL A
Sbjct: 259 C-RLLDNARKLFETSVERNVVMWTTLISGFAKCERAVEAIDLFRQMLGESILPNHCTLAA 317

Query: 339 ILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARD 398
           IL SC+    L HG  VH Y+++ G+  D     + ++ Y++CG+I  + ++F+ M  R+
Sbjct: 318 ILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDTYARCGNIQMARKVFDMMPKRN 377

Query: 399 FVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFN 458
            +SW+++I+ +G +G  EEAL  F  M+   + P+++T +++LSAC+H+G VKE    F 
Sbjct: 378 VISWSSMINAFGINGLFEEALDCFDNMKSQNLVPNSVTFVSLLSACSHSGNVKEGWKQFE 437

Query: 459 NVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRL 518
           ++ ++  +    EHYAC VDLLG++G+I +A   +  MP+KP      +L+SACRIH  +
Sbjct: 438 SMTRDYGLVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASAWGALLSACRIHKEV 497

Query: 519 EVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           ++A  +A +L+  EP+ ++ Y LLS + +++G W     V   M  KG  K  G S  E
Sbjct: 498 DLAGEIAEKLLSMEPDESSVYVLLSNIYADAGMWEMVNCVRHKMGIKGYRKPMGLSATE 556



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 126/456 (27%), Positives = 228/456 (50%), Gaps = 23/456 (5%)

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI- 193
           ++S+ SQ   L   +Q+HA VI+ G F+  V + ++L + Y + +    A   F+++   
Sbjct: 10  LLSILSQTKTLHHTQQVHAKVIIHG-FQDEVVLGSSLTNAYIQSNRLDFATASFDRIPCW 68

Query: 194 -RNEVSWTAMISGCIDSQN--YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNG 250
            RN  SW  ++SG   S++  Y   + L+  M+R         L   + AC  L  L NG
Sbjct: 69  KRNRHSWNTILSGYSKSKSCYYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLENG 128

Query: 251 KAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQ 310
             IHG A   G D D +++ +L+ MY +    +  A+ +F+   V++ V+W  +++GY +
Sbjct: 129 MLIHGLAMKNGLDKDDYVAPSLVEMYAQFG-TMESAQKVFDEMPVRNSVLWGVLMKGYLK 187

Query: 311 SGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVH-CYIMKAGLNFDVS 369
               SE  +LF  MR   +  +++TL+ ++ +C   S    G  VH   I ++ ++    
Sbjct: 188 YSKDSEVFRLFYLMRDTGLALDALTLICLVKACGNVSAGKEGKCVHGLSIRRSFIDQSGY 247

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
           +  ++++MY KC  + ++ ++F     R+ V WTTLISG+       EA+ LF +M    
Sbjct: 248 LEASIIDMYVKCRLLDNARKLFETSVERNVVMWTTLISGFAKCERAVEAIDLFRQMLGES 307

Query: 430 VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
           + P+  T+ AIL +C+  G ++  +++ +  M    I +   ++  ++D   + G I+ A
Sbjct: 308 ILPNHCTLAAILVSCSSLGSLRHGKSV-HGYMIRNGIEMDAVNFTSFIDTYARCGNIQMA 366

Query: 490 CKVVSTMPMKPSTRILSSLVSACRIHGRLEVA-----EMLAHQLIEAEPENAANYTLLSM 544
            KV   MP K +    SS+++A  I+G  E A      M +  L+   P +    +LLS 
Sbjct: 367 RKVFDMMP-KRNVISWSSMINAFGINGLFEEALDCFDNMKSQNLV---PNSVTFVSLLS- 421

Query: 545 VCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIENEY 580
            CS SGN    +E W+  + + +++ YG    E  Y
Sbjct: 422 ACSHSGN---VKEGWK--QFESMTRDYGLVPEEEHY 452



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 77/171 (45%), Gaps = 9/171 (5%)

Query: 338 AILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA-- 395
           A+LS  ++   L H   VH  ++  G   +V +G++L N Y +   +  +   F+ +   
Sbjct: 9   ALLSILSQTKTLHHTQQVHAKVIIHGFQDEVVLGSSLTNAYIQSNRLDFATASFDRIPCW 68

Query: 396 ARDFVSWTTLISGYGFHG--YGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEA 453
            R+  SW T++SGY      Y  + L L+  M+      D+  ++  + AC   GL++  
Sbjct: 69  KRNRHSWNTILSGYSKSKSCYYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLENG 128

Query: 454 ETLFNNVMKEKKIALAIEHYAC--YVDLLGKSGKIEDACKVVSTMPMKPST 502
             +    MK     L  + Y     V++  + G +E A KV   MP++ S 
Sbjct: 129 MLIHGLAMKN---GLDKDDYVAPSLVEMYAQFGTMESAQKVFDEMPVRNSV 176


>gi|356571125|ref|XP_003553731.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g05240-like [Glycine max]
          Length = 552

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 171/547 (31%), Positives = 287/547 (52%), Gaps = 14/547 (2%)

Query: 43  HQHFGLQL--HCTALKSGSDADPVISNSLIS--MYAKFSKPESAYQLFDEMPYRDTISWN 98
           HQ+  L L   C +++       +I + LI   + + F    +A  +F ++       WN
Sbjct: 3   HQNTILSLLARCKSMRELKKLRGLILSKLIDFCVDSXFGDINNADLVFRQIDAPSVYIWN 62

Query: 99  SIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVD 158
           S+I  F  N     S+ ++R++   G+         ++  C  I + + G+ IH  ++  
Sbjct: 63  SMIRGFVNNHNPRMSMLLYRQLIENGYSPDHFTFPFVLKACCAIADQDCGKCIHCCIVKS 122

Query: 159 GSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDL 218
           G FE   + +T LL +Y  C      L+VF+ + I N V+WT +I+G +++      + +
Sbjct: 123 G-FEADAYTATGLLHMYVSCADMKSGLKVFDNIPIWNVVAWTCLIAGYVNNNQPYEALKV 181

Query: 219 FRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFD-------FDHHLSAA 271
           F+ M   GV+P  +T+   L+ CA  RD   G+ +H +    G+D        +  L+ A
Sbjct: 182 FKDMSHCGVEPNEITMVNALIXCARSRDFDTGQWVHQHIRKAGYDPFMSTSNSNIILATA 241

Query: 272 LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP 331
           ++ MY +C  +   AR +F +   +++V W+S+I  Y+Q     EA+ LF  M    I P
Sbjct: 242 ILEMYAKCG-SFKIARDLFNKMPQRNIVSWNSMINAYNQYERHKEALDLFFDMWTSGIYP 300

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIF 391
           +  T L++LS C     L+ G  VH Y+ K G+  D+S+  AL++MY+K G + S+ +IF
Sbjct: 301 DKATFLSVLSVCAHLCALALGQTVHAYLXKTGIGTDISLATALLDMYAKTGGLGSAQKIF 360

Query: 392 NEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE-SGVEPDAITVLAILSACNHAGLV 450
           + +  RD V WT++I+G   HG G EAL +F  M E S + PD IT + +L AC+H GLV
Sbjct: 361 SSLQKRDVVMWTSMINGLAMHGDGNEALGMFQTMHEDSSLVPDHITYIGVLFACSHVGLV 420

Query: 451 KEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVS 510
           +EA+  F  + +   I    EHY C VDLL +SG   +A +++ TM ++P+  I  +L+ 
Sbjct: 421 EEAKKHFRLMTEMYSIVPGREHYGCMVDLLSRSGHFGEAERLMETMAIQPNISIXGALLY 480

Query: 511 ACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKS 570
            C+IH  L VA  +  +L E E   +  + LLS + +++G W       +VM+ K ++K 
Sbjct: 481 GCQIHENLXVANQVKERLTELESCQSGAHVLLSNIYAKAGRWEDVNGTRKVMKHKRITKI 540

Query: 571 YGFSRIE 577
            G S +E
Sbjct: 541 IGHSSVE 547



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 95/202 (47%), Gaps = 13/202 (6%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           ++  SG+Y + A   SV+  CA+       G  +H    K+G   D  ++ +L+ MYAK 
Sbjct: 292 DMWTSGIYPDKATFLSVLSVCAHLCALA-LGQTVHAYLXKTGIGTDISLATALLDMYAKT 350

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELL-AGI 135
               SA ++F  +  RD + W S+IN    +G    +L MF+ M+    ++   +   G+
Sbjct: 351 GGLGSAQKIFSSLQKRDVVMWTSMINGLAMHGDGNEALGMFQTMHEDSSLVPDHITYIGV 410

Query: 136 ISLCSQIGELELGRQIHALV-----IVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQ 190
           +  CS +G +E  ++   L+     IV G       V     DL S+  H+  A R+ E 
Sbjct: 411 LFACSHVGLVEEAKKHFRLMTEMYSIVPGREHYGCMV-----DLLSRSGHFGEAERLMET 465

Query: 191 MVIRNEVSWT-AMISGCIDSQN 211
           M I+  +S   A++ GC   +N
Sbjct: 466 MAIQPNISIXGALLYGCQIHEN 487


>gi|297832866|ref|XP_002884315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330155|gb|EFH60574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 861

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 191/597 (31%), Positives = 298/597 (49%), Gaps = 26/597 (4%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V  +     L  +K E+       + +I  SV+++CA A +    G QLH  ALKS   A
Sbjct: 215 VQNNLLSLALKFFK-EMQKVNAGVSQSIYASVLRSCA-ALSELRLGGQLHAHALKSDFAA 272

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D ++  + + MYAK    + A  LFD+    +  S+N++I  ++Q     ++L +F  + 
Sbjct: 273 DGIVRTATLDMYAKCDNMQDAQILFDKSENLNRQSYNAMITGYSQEEHGFKALLLFHRLM 332

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
             G       L+G+   C+ +  L  G QI+ L I   S  L V V+ A +D+Y KC   
Sbjct: 333 SSGLGFDEISLSGVFRACALVKGLSEGLQIYDLAI-KSSLSLDVCVANAAIDMYGKCQAL 391

Query: 182 LIALRVFEQMVIRNEVSWTAMISGC-IDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
             A RVF++M  R+ VSW A+I+    + + Y+T + LF +M R  ++P   T   VL A
Sbjct: 392 AEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYET-LFLFVSMLRSRIEPDEFTFGSVLKA 450

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI---IFERTKVKD 297
           C     L  G  IH      G   +  +  +L+ MY +C       +I    F+RT V  
Sbjct: 451 CTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRTNVSG 509

Query: 298 V----------------VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILS 341
                            V W+SII GY       +A  LF+RM    I P+  T   +L 
Sbjct: 510 TMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLD 569

Query: 342 SCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS 401
           +C   +    G  +H  ++K  L  DV I + L++MYSKCG +  S  +F +   RDFV+
Sbjct: 570 TCANLASAGLGKQIHAQVIKKELQSDVYISSTLVDMYSKCGDLHDSRLMFEKSLRRDFVT 629

Query: 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVM 461
           W  +I GY  HG GEEA+QLF  M    ++P+ +T ++IL AC H GL+ +    F  + 
Sbjct: 630 WNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMK 689

Query: 462 KEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIH-GRLEV 520
           ++  +   + HY+  VD+LGKSGK++ A +++  MP +    I  +L+  C IH   +EV
Sbjct: 690 RDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEV 749

Query: 521 AEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           AE     L+  +P++++ YTLLS V +++G W    ++ R MR   L K  G S +E
Sbjct: 750 AEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVE 806



 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 138/433 (31%), Positives = 240/433 (55%), Gaps = 4/433 (0%)

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D V  N +I+ YAK +    A   F+ MP RD +SWNS+++ + QNG  ++S+E+F +M 
Sbjct: 71  DVVSWNKMINGYAKSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMG 130

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
             G        A I+ +CS + +  LG QIH +V+  G  +  V  ++ALLD+Y+K   +
Sbjct: 131 RAGTEFDGRTFAIILKVCSCLEDTSLGMQIHGVVVRVGC-DTDVVAASALLDMYAKGKRF 189

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
           + +LRVF+ +  +N VSW+A+I+GC+ +      +  F+ MQ+     ++     VL +C
Sbjct: 190 VESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSC 249

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A L +LR G  +H +A    F  D  +  A + MY +C + +  A+I+F++++  +   +
Sbjct: 250 AALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKC-DNMQDAQILFDKSENLNRQSY 308

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           +++I GYSQ     +A+ LF R+    +  + ++L  +  +C     LS GL ++   +K
Sbjct: 309 NAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYDLAIK 368

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
           + L+ DV + NA ++MY KC ++  + ++F+EM  RD VSW  +I+ +  +G G E L L
Sbjct: 369 SSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFL 428

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
           F+ M  S +EPD  T  ++L AC    L    E + ++++K   +A         +D+  
Sbjct: 429 FVSMLRSRIEPDEFTFGSVLKACTGGSLGYGME-IHSSIVK-SGMASNSSVGCSLIDMYS 486

Query: 482 KSGKIEDACKVVS 494
           K G IE+A K+ S
Sbjct: 487 KCGMIEEAEKIHS 499



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 146/539 (27%), Positives = 264/539 (48%), Gaps = 27/539 (5%)

Query: 33  VIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYR 92
           ++K C+  +     G+Q+H   ++ G D D V +++L+ MYAK  +   + ++F  +P +
Sbjct: 144 ILKVCSCLED-TSLGMQIHGVVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEK 202

Query: 93  DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIH 152
           +++SW++II    QN     +L+ F+EM      +   + A ++  C+ + EL LG Q+H
Sbjct: 203 NSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLH 262

Query: 153 ALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNY 212
           A  +    F     V TA LD+Y+KC +   A  +F++    N  S+ AMI+G    ++ 
Sbjct: 263 AHAL-KSDFAADGIVRTATLDMYAKCDNMQDAQILFDKSENLNRQSYNAMITGYSQEEHG 321

Query: 213 DTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAAL 272
              + LF  +   G+    ++L+ V  ACA ++ L  G  I+  A       D  ++ A 
Sbjct: 322 FKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYDLAIKSSLSLDVCVANAA 381

Query: 273 MHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPN 332
           + MY +C +AL  A  +F+  + +D V W++II  + Q+G   E + LF  M   RIEP+
Sbjct: 382 IDMYGKC-QALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPD 440

Query: 333 SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFN 392
             T  ++L +CT  S L +G+ +H  I+K+G+  + S+G +L++MYSKCG I  + +I +
Sbjct: 441 EFTFGSVLKACTGGS-LGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHS 499

Query: 393 EMAARDF--------------------VSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
               R                      VSW ++ISGY      E+A  LF  M E G+ P
Sbjct: 500 RFFQRTNVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITP 559

Query: 433 DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKV 492
           D  T   +L  C +       + +   V+K K++   +   +  VD+  K G + D+ ++
Sbjct: 560 DKFTYATVLDTCANLASAGLGKQIHAQVIK-KELQSDVYISSTLVDMYSKCGDLHDS-RL 617

Query: 493 VSTMPMKPSTRILSSLVSACRIHGRLEVA-EMLAHQLIEAEPENAANYTLLSMVCSESG 550
           +    ++      ++++     HG+ E A ++    ++E    N   +  +   C+  G
Sbjct: 618 MFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMG 676



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 109/395 (27%), Positives = 185/395 (46%), Gaps = 34/395 (8%)

Query: 139 CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
           C++ G LELG+Q HA +I+ G F  + FV   LL +Y+    ++ A  VF++M +R+ VS
Sbjct: 16  CAKQGALELGKQAHAHMILSG-FRPTTFVLNCLLQVYTNSRDFVSASMVFDRMPLRDVVS 74

Query: 199 WTAMISGCIDS-----------------------------QNYDT--GIDLFRAMQREGV 227
           W  MI+G   S                             QN +T   I++F  M R G 
Sbjct: 75  WNKMINGYAKSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGT 134

Query: 228 KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPAR 287
           +    T  I+L  C+ L D   G  IHG     G D D   ++AL+ MY +    +   R
Sbjct: 135 EFDGRTFAIILKVCSCLEDTSLGMQIHGVVVRVGCDTDVVAASALLDMYAKGKRFVESLR 194

Query: 288 IIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQS 347
            +F+    K+ V WS+II G  Q+  LS A+K F  M+      +     ++L SC   S
Sbjct: 195 -VFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALS 253

Query: 348 FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLIS 407
            L  G  +H + +K+    D  +  A ++MY+KC ++  +  +F++    +  S+  +I+
Sbjct: 254 ELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDKSENLNRQSYNAMIT 313

Query: 408 GYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIA 467
           GY    +G +AL LF  +  SG+  D I++  +  AC     + E   +++  +K   ++
Sbjct: 314 GYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYDLAIK-SSLS 372

Query: 468 LAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPST 502
           L +      +D+ GK   + +A +V   M  + + 
Sbjct: 373 LDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAV 407


>gi|357143265|ref|XP_003572861.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Brachypodium distachyon]
          Length = 697

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 165/549 (30%), Positives = 308/549 (56%), Gaps = 10/549 (1%)

Query: 33  VIKACAYAQTHQHFGLQLHCTALKSGSD-ADPVISNSLISMYAKFSKPESAYQLFDEMPY 91
           ++KACA      H G  LH  A++S +   D  ++ +L+ MYAK      +   ++    
Sbjct: 105 LLKACAMLPALAH-GRALHALAIRSCTAYTDAFVAAALVHMYAKCRGMVGSINAYNAFSE 163

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMF-REMYLCGFVLKAELLAGIISLCSQIGELELGRQ 150
            D +   S++  + QN     +LE F R +   GF+     L  +IS  +Q+ ++  G+ 
Sbjct: 164 PDMVLRTSMVTGYEQNRMAAEALEFFSRHVVGQGFMPSPVTLVSVISAAAQLKDVLNGQA 223

Query: 151 IHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQ 210
            HA VI + +FE  + +  A+L  Y +      A R+FE M  ++ V+W+ M++G + S 
Sbjct: 224 CHAFVIRN-NFEYDLVLVNAILGFYMRIGAVQAARRLFEGMTEKDVVTWSCMVTGYVQSG 282

Query: 211 NYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSA 270
           +    +  ++ M   G+KP  VT+  V+ AC+   D+  G+ +H  A   G + +  ++ 
Sbjct: 283 DICEALTAYKKMVEAGIKPNAVTVVSVVQACSLAPDIEEGRRVHDIAVKIGCELEMTVAT 342

Query: 271 ALMHMY--CECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER 328
           AL+ MY  C C E    A  +F R   KD V W+ +I G++Q+G   E+M++F  M    
Sbjct: 343 ALVDMYMKCSCHE---EAMQLFCRMSKKDAVAWAVVISGFTQNGLPDESMRVFKCMLFGG 399

Query: 329 IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSH 388
             P++VT++ +L++C+    +     +H Y++  G    + +  AL+++YSKCG++  + 
Sbjct: 400 PFPDAVTMVKVLAACSESGVMRQAFCLHGYLVITGFCDKIFVAAALVDLYSKCGNLGCAV 459

Query: 389 QIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG 448
           ++F     +D V W+++ISGYG HG G++A++LF  M  S V+P+++T +++LSAC+H+G
Sbjct: 460 RVFESAMEKDVVLWSSMISGYGVHGLGQQAVELFQMMVASSVKPNSLTFVSVLSACSHSG 519

Query: 449 LVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSL 508
           LV+E + +F ++ +   +     H++  VDLLG++G++++A K++     +       +L
Sbjct: 520 LVQEGKRIFESMTQVYGVVPNAVHHSAMVDLLGRAGELQEAAKLLHGNG-RADAHTWCAL 578

Query: 509 VSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLS 568
           ++ACR H   E++E++A +L++ +P++A  Y LL+ + +   NW  A+E   ++R +GL+
Sbjct: 579 LAACRAHHDTEMSEVVAAKLLKLDPDHAGYYNLLNNIYTFDENWSSAKENRNIIRDRGLN 638

Query: 569 KSYGFSRIE 577
           K  G S +E
Sbjct: 639 KVPGCSAVE 647



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 190/357 (53%), Gaps = 21/357 (5%)

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
           ++HA ++  G    S  +++ +L  Y       +A  +F+++ +       A++   + +
Sbjct: 25  RLHAHLLRSGHLHSSHHLTSHVLASYPTG----LARHLFDEIPVPTPRLANALLRAHVRA 80

Query: 210 QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY-CCGFDFDHHL 268
           + +   + L   ++   V+P   TL+++L ACA L  L +G+A+H  A   C    D  +
Sbjct: 81  RQWCDALLLIPCLR---VRPDAFTLSLLLKACAMLPALAHGRALHALAIRSCTAYTDAFV 137

Query: 269 SAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRL-E 327
           +AAL+HMY +C   +      +      D+V+ +S++ GY Q+   +EA++ FSR  + +
Sbjct: 138 AAALVHMYAKCRGMVGSIN-AYNAFSEPDMVLRTSMVTGYEQNRMAAEALEFFSRHVVGQ 196

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
              P+ VTL++++S+  +   + +G   H ++++    +D+ + NA++  Y + G++ ++
Sbjct: 197 GFMPSPVTLVSVISAAAQLKDVLNGQACHAFVIRNNFEYDLVLVNAILGFYMRIGAVQAA 256

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHA 447
            ++F  M  +D V+W+ +++GY   G   EAL  + +M E+G++P+A+TV++++ AC+ A
Sbjct: 257 RRLFEGMTEKDVVTWSCMVTGYVQSGDICEALTAYKKMVEAGIKPNAVTVVSVVQACSLA 316

Query: 448 GLVKEAETLFNNVMK-----EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
             ++E   + +  +K     E  +A A+      VD+  K    E+A ++   M  K
Sbjct: 317 PDIEEGRRVHDIAVKIGCELEMTVATAL------VDMYMKCSCHEEAMQLFCRMSKK 367


>gi|296087629|emb|CBI34885.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 177/581 (30%), Positives = 294/581 (50%), Gaps = 65/581 (11%)

Query: 60  DADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFRE 119
           + + V  ++LIS   K+ + E +   F+  P+++ +SW + I+ F +NG    +L++F  
Sbjct: 115 ERNEVSWSALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFR 174

Query: 120 MYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS----------- 168
           +   G          ++  C ++G+  LG  I  LV+  G FE  + VS           
Sbjct: 175 LLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLVVKAG-FEHYLSVSNSLITLSLRMG 233

Query: 169 --------------------TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCID 208
                               TA+LD Y +      A R+F++M  RNE+SW+AMI+    
Sbjct: 234 EIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQ 293

Query: 209 SQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHL 268
           S   +  + LF  M +EG KP        L A A LR L  G  IHG+    G D D  +
Sbjct: 294 SGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFI 353

Query: 269 SAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSG---------------- 312
            ++L+ +YC+C +     R++F+    K+VV W+S++ GYS +G                
Sbjct: 354 GSSLIDLYCKCGKP-DDGRLVFDLILEKNVVCWNSMVGGYSINGRLEETEELFELIPEKN 412

Query: 313 DLS---------------EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHC 357
           D+S               + +++F+ + +    PN  T  ++L +C   + L  G+ VH 
Sbjct: 413 DVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHG 472

Query: 358 YIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEE 417
            I+K G+ +D+ +G AL +MY+KCG I SS Q+F  M  ++ +SWT +I G    G+  E
Sbjct: 473 KIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVE 532

Query: 418 ALQLFLEMQE-SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACY 476
           +L LF EM+  S V P+ + +L++L AC+H GLV +    FN++ K   I    +HY C 
Sbjct: 533 SLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGKHYTCV 592

Query: 477 VDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENA 536
           VDLL +SG++ +A + + T+P +P     ++L+S C+ +   ++AE  A +L +    N+
Sbjct: 593 VDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDEKIAERTAKKLWQLAENNS 652

Query: 537 ANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           A Y LLS + + +G W+    + ++MR KGL KS G S +E
Sbjct: 653 AGYVLLSNIYASAGRWIDVSNIRKLMREKGLKKSGGCSWVE 693



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 133/522 (25%), Positives = 215/522 (41%), Gaps = 118/522 (22%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G  LH   +K+G  +   I+  L+ +Y    K     Q+  E    D +  N +I+ + Q
Sbjct: 40  GNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQIVKEFDGSDLVVSNCMISAYVQ 99

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
            G  V++  +F EM     V  + L++G++                      G  E S++
Sbjct: 100 WGNLVQARLLFDEMPERNEVSWSALISGLMKY--------------------GRVEESMW 139

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
                                FE+   +N VSWTA ISG + +      + LF  +   G
Sbjct: 140 Y--------------------FERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESG 179

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS----------------- 269
           V+P  VT T V+ AC EL D   G +I G     G  F+H+LS                 
Sbjct: 180 VRPNDVTFTSVVRACGELGDFGLGMSILGLVVKAG--FEHYLSVSNSLITLSLRMGEIDL 237

Query: 270 ----------------AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGD 313
                            A++  Y E T  L  AR IF+    ++ + WS++I  YSQSG 
Sbjct: 238 ARRVFDRMEKRDVVSWTAILDAYVE-TGDLREARRIFDEMPERNEISWSAMIARYSQSGY 296

Query: 314 LSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNA 373
             EA+KLFS+M  E  +PN       LS+      LS G+ +H ++ K G++ DV IG++
Sbjct: 297 AEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSS 356

Query: 374 LMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHG-------------------Y 414
           L+++Y KCG       +F+ +  ++ V W +++ GY  +G                   +
Sbjct: 357 LIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEETEELFELIPEKNDVSW 416

Query: 415 G------------EEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462
           G            E+ L++F  +  SG  P+  T  ++L AC     + +   +   ++K
Sbjct: 417 GTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIK 476

Query: 463 EKKIALAIEHYACYV-----DLLGKSGKIEDACKVVSTMPMK 499
                L I+ Y  +V     D+  K G I  + +V   MP K
Sbjct: 477 -----LGIQ-YDIFVGTALTDMYAKCGDIGSSKQVFERMPEK 512



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 110/458 (24%), Positives = 204/458 (44%), Gaps = 72/458 (15%)

Query: 18  LHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTAL--KSGSDADPVISNSLISMYAK 75
           L  SG+  N     SV++AC        FGL +    L  K+G +    +SNSLI++  +
Sbjct: 175 LLESGVRPNDVTFTSVVRACG---ELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLR 231

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINC-------------------------------F 104
             + + A ++FD M  RD +SW +I++                                +
Sbjct: 232 MGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARY 291

Query: 105 TQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELS 164
           +Q+G+   +L++F +M   GF       A  +S  + +  L  G  IH  V   G  +  
Sbjct: 292 SQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKIG-IDKD 350

Query: 165 VFVSTALLDLYSKCHH----WLIALRVFEQMVI--------------------------- 193
           VF+ ++L+DLY KC       L+   + E+ V+                           
Sbjct: 351 VFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEETEELFELIPE 410

Query: 194 RNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAI 253
           +N+VSW  +I+G ++++  +  +++F  +   G  P + T + VL ACA +  L  G  +
Sbjct: 411 KNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNV 470

Query: 254 HGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGD 313
           HG     G  +D  +  AL  MY +C + +  ++ +FER   K+ + W+ +I+G ++SG 
Sbjct: 471 HGKIIKLGIQYDIFVGTALTDMYAKCGD-IGSSKQVFERMPEKNEISWTVMIQGLAESGF 529

Query: 314 LSEAMKLFSRM-RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA-GLNFDVSIG 371
             E++ LF  M R   + PN + LL++L +C+    +  GL     + K  G+       
Sbjct: 530 AVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGKHY 589

Query: 372 NALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISG 408
             ++++ S+ G +  + +    +  + +  +W  L+SG
Sbjct: 590 TCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSG 627



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 119/269 (44%), Gaps = 35/269 (13%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           + E+ L L+ + +   G   N +     + A A  +     G+ +H    K G D D  I
Sbjct: 296 YAEEALKLFSKMVQ-EGFKPNISCFACTLSALASLRALSA-GINIHGHVTKIGIDKDVFI 353

Query: 66  SNSLISMYAKFSKPESAYQLFD-------------------------------EMPYRDT 94
            +SLI +Y K  KP+    +FD                                +P ++ 
Sbjct: 354 GSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEETEELFELIPEKND 413

Query: 95  ISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHAL 154
           +SW +II  + +N    + LE+F  + + G        + ++  C+ I  L+ G  +H  
Sbjct: 414 VSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGK 473

Query: 155 VIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDT 214
           +I  G  +  +FV TAL D+Y+KC     + +VFE+M  +NE+SWT MI G  +S     
Sbjct: 474 IIKLG-IQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVE 532

Query: 215 GIDLFRAMQREG-VKPTRVTLTIVLLACA 242
            + LF  M+R   V P  + L  VL AC+
Sbjct: 533 SLILFEEMERTSEVAPNELMLLSVLFACS 561



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 94/208 (45%), Gaps = 18/208 (8%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E+ L ++   L  SG   N +   SV+ ACA   +    G+ +H   +K G   D  +  
Sbjct: 430 EKVLEVFNT-LLVSGQTPNKSTFSSVLCACASIASLDK-GMNVHGKIIKLGIQYDIFVGT 487

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +L  MYAK     S+ Q+F+ MP ++ ISW  +I    ++GF V SL +F EM     V 
Sbjct: 488 ALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVA 547

Query: 128 KAEL-LAGIISLCSQIGELELG-------RQIHALVIVDGSFELSVFVSTALLDLYSKCH 179
             EL L  ++  CS  G ++ G        +++ +      +       T ++DL S+  
Sbjct: 548 PNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGKHY-------TCVVDLLSRSG 600

Query: 180 HWLIALRVFEQMVIRNEV-SWTAMISGC 206
               A      +  + E  +W A++SGC
Sbjct: 601 RLYEAEEFIRTIPFQPEANAWAALLSGC 628


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 162/460 (35%), Positives = 259/460 (56%), Gaps = 4/460 (0%)

Query: 120 MYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH 179
           M + G  ++ +    +++ C     +  G+++HA +I    +E  V++ T L+ LY+KC 
Sbjct: 1   MGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMI-KTCYEPPVYLRTRLIVLYNKCR 59

Query: 180 HWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLL 239
               A RV ++M  RN VSWTAMISG          + LF  M   G  P   T   VL 
Sbjct: 60  CLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLT 119

Query: 240 ACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVV 299
           +C      + G+ IH       F+    + ++L+ MY +  +    AR +F+    +DVV
Sbjct: 120 SCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICE-ARRVFDGLPERDVV 178

Query: 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
             ++II GY+Q G   EA+ LF R++ E +  N VT  ++L++ +  + L HG  VH ++
Sbjct: 179 SCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHV 238

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEAL 419
           ++A L F V + N+L++MYSKCGS+T S +IF+ M  R  +SW  ++ GY  HG G EA+
Sbjct: 239 LRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAV 298

Query: 420 QLF-LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK-IALAIEHYACYV 477
           +LF L  +E+ V+PD++T LA+LS C+H G+      +F  ++ +K      IEHY C V
Sbjct: 299 ELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVV 358

Query: 478 DLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAA 537
           DL G++G++E+A + +  MP +P+  I  SL+ ACR+H  + + E +A +L+E E ENA 
Sbjct: 359 DLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAG 418

Query: 538 NYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           NY +LS + + +G W     V  +M+ K + K  G S IE
Sbjct: 419 NYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIE 458



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 132/442 (29%), Positives = 228/442 (51%), Gaps = 15/442 (3%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPY 91
           SV+  C  +QT    G ++H   +K+  +    +   LI +Y K      A ++ DEMP 
Sbjct: 15  SVLTECI-SQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPE 73

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQI 151
           R+ +SW ++I+ ++Q G+   +L +F EM + G        A +++ C+     +LGRQI
Sbjct: 74  RNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQI 133

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQN 211
           H+LVI   SFE  +FV ++LLD+Y+K      A RVF+ +  R+ VS TA+ISG      
Sbjct: 134 HSLVI-KTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGL 192

Query: 212 YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAA 271
            +  +DLFR +QREG++   VT   VL A + L  L +G+ +H +       F   L  +
Sbjct: 193 DEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNS 252

Query: 272 LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE-RIE 330
           L+ MY +C  +L  +R IF+    + V+ W++++ GYS+ G   EA++LF  M+ E +++
Sbjct: 253 LIDMYSKCG-SLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVK 311

Query: 331 PNSVTLLAILSSCTRQSFLSHGLGVHCYIM--KAGLNFDVSIGNALMNMYSKCGSITSSH 388
           P+SVT LA+LS C+       GL +   ++  K G   ++     +++++ + G +  + 
Sbjct: 312 PDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAF 371

Query: 389 QIFNEMAARDFVS-WTTLISGYGFHG---YGEEALQLFLEMQESGVEPDAITVLAILSAC 444
           +   +M      + W +L+     H     GE   +  LE++          +L+ L A 
Sbjct: 372 EFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENA--GNYVILSNLYAS 429

Query: 445 NHAGLVKEAETLFNNVMKEKKI 466
             AG   +  T+   +MKEK +
Sbjct: 430 --AGRWDDVRTV-RELMKEKAV 448


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 175/539 (32%), Positives = 284/539 (52%), Gaps = 43/539 (7%)

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM------ 120
           N++++ Y    +P  A +LFD+MP R+TISWN +++ + +NG    + ++F +M      
Sbjct: 51  NAIVAGYFHNKRPAEAQKLFDKMPERNTISWNGLVSGYVKNGMISEARKVFDKMPERNVV 110

Query: 121 --------YLC-GFVLKAELL------AGIISLCSQIGEL-ELGRQIHALVIVDGSFELS 164
                   Y+  G + +AELL        ++S    +G L E GR   A  + D      
Sbjct: 111 SWTSMVRGYVQEGLIDEAELLFWRMPEKNVVSWTVMLGGLIEDGRVDEARRLFDMIPVKD 170

Query: 165 VFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR 224
           V  ST ++           A  +F++M  RN V+WT+MISG   +   D    LF  M  
Sbjct: 171 VVASTNMIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVMPD 230

Query: 225 EGVKPTRVTLTIVLLA------CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCE 278
           +      VT T +L          E  +L     +   A C G           M M   
Sbjct: 231 K----NEVTWTAMLKGYTRSGRINEAAELFKAMPVKPVAACNG-----------MIMGFG 275

Query: 279 CTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLA 338
               +  AR +F++ K KD   WS++I+ Y + G   EA+ LFS M+ E + PN  ++++
Sbjct: 276 LNGEVGKARWVFDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIIS 335

Query: 339 ILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARD 398
           ILS C   + L HG  VH  ++++  + D+ + + L+ MY KCG + +  ++F+  +++D
Sbjct: 336 ILSVCGSLASLDHGRQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKD 395

Query: 399 FVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFN 458
            V W ++I+GY  HG+GE+AL++F EM  SG  PD IT + +LSAC + G VKE   +F 
Sbjct: 396 IVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGLEIFE 455

Query: 459 NVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRL 518
           ++  + ++    EHYAC VDLLG++GK+ +A  ++  MP++    +  +L+SACR H  L
Sbjct: 456 SMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLSACRTHKNL 515

Query: 519 EVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           ++AE+ A +L++ EP +A  Y LLS + +    W    E+ + MRA+ +SKS G S IE
Sbjct: 516 DLAEIAAKKLLQLEPSSAGPYILLSNLYASQSRWKDVAELRKTMRARNVSKSPGCSWIE 574



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/383 (25%), Positives = 177/383 (46%), Gaps = 29/383 (7%)

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D V S ++I       +   A ++FDEMP R+ ++W S+I+ +  N     + ++F  M 
Sbjct: 170 DVVASTNMIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVMP 229

Query: 122 LCGFVLKAELLAGII--SLCSQIGELELGRQIHALVIVDG---SFELSVFVSTALLDLYS 176
               V    +L G       ++  EL     +  +   +G    F L+  V  A      
Sbjct: 230 DKNEVTWTAMLKGYTRSGRINEAAELFKAMPVKPVAACNGMIMGFGLNGEVGKA------ 283

Query: 177 KCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYD-TGIDLFRAMQREGVKPTRVTLT 235
               W     VF+QM  +++ +W+A+I    + + ++   + LF  MQREGV+P   ++ 
Sbjct: 284 ---RW-----VFDQMKEKDDGTWSALIK-IYERKGFELEALALFSLMQREGVRPNFPSII 334

Query: 236 IVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV 295
            +L  C  L  L +G+ +H       FD D ++S+ L+ MY +C + +   R +F+R   
Sbjct: 335 SILSVCGSLASLDHGRQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKR-VFDRFSS 393

Query: 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV 355
           KD+V+W+SII GY+Q G   +A+++F  M      P+ +T + +LS+C     +  GL +
Sbjct: 394 KDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGLEI 453

Query: 356 HCYIMKAGLNFDVSIGN--ALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFH 412
               MK+    D    +   ++++  + G +  +  +   M    D + W  L+S    H
Sbjct: 454 F-ESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLSACRTH 512

Query: 413 ---GYGEEALQLFLEMQESGVEP 432
                 E A +  L+++ S   P
Sbjct: 513 KNLDLAEIAAKKLLQLEPSSAGP 535



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 124/291 (42%), Gaps = 16/291 (5%)

Query: 4   KHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADP 63
           K F  + L L+   +   G+  N   + S++  C    +  H G Q+H   ++S  D D 
Sbjct: 308 KGFELEALALFSL-MQREGVRPNFPSIISILSVCGSLASLDH-GRQVHSQLVRSHFDLDI 365

Query: 64  VISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC 123
            +S+ LI+MY K     +  ++FD    +D + WNSII  + Q+GF  ++LE+F EM+  
Sbjct: 366 YVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSS 425

Query: 124 GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
           G         G++S C   G+++ G +I   +      +        ++DL  +      
Sbjct: 426 GAAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTEHYACMVDLLGRAGKLNE 485

Query: 184 ALRVFEQMVIR-NEVSWTAMISGCIDSQNYDTG-IDLFRAMQREGVKPTRVTLTIVLLA- 240
           A+ + E M +  + + W A++S C   +N D   I   + +Q E        L   L A 
Sbjct: 486 AMNLIENMPVEADAIVWGALLSACRTHKNLDLAEIAAKKLLQLEPSSAGPYILLSNLYAS 545

Query: 241 ------CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
                  AELR     + +     C   + D+ +     HM+     A HP
Sbjct: 546 QSRWKDVAELRKTMRARNVSKSPGCSWIEVDNKV-----HMFTGGGSASHP 591



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/322 (21%), Positives = 134/322 (41%), Gaps = 49/322 (15%)

Query: 60  DADPVISNSLISMYAKFSKPESAYQLFDEMPY---------------------------- 91
           D + V   +++  Y +  +   A +LF  MP                             
Sbjct: 230 DKNEVTWTAMLKGYTRSGRINEAAELFKAMPVKPVAACNGMIMGFGLNGEVGKARWVFDQ 289

Query: 92  ---RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELG 148
              +D  +W+++I  + + GF + +L +F  M   G       +  I+S+C  +  L+ G
Sbjct: 290 MKEKDDGTWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHG 349

Query: 149 RQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCID 208
           RQ+H+  +V   F+L ++VS+ L+ +Y KC   +   RVF++   ++ V W ++I+G   
Sbjct: 350 RQVHSQ-LVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQ 408

Query: 209 SQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHL 268
               +  +++F  M   G  P  +T   VL AC        GK   G          + +
Sbjct: 409 HGFGEKALEVFHEMFSSGAAPDEITFIGVLSACG-----YTGKVKEGLEIFESMKSKYQV 463

Query: 269 SAALMHMYCEC-----TEALHPARIIFERTKVK-DVVIWSSIIRG--YSQSGDLSEAMKL 320
                H  C          L+ A  + E   V+ D ++W +++      ++ DL+E    
Sbjct: 464 DQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLSACRTHKNLDLAE---- 519

Query: 321 FSRMRLERIEPNSVTLLAILSS 342
            +  +L ++EP+S     +LS+
Sbjct: 520 IAAKKLLQLEPSSAGPYILLSN 541



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 128/291 (43%), Gaps = 60/291 (20%)

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           AR IF+  + K V  W++I+ GY  +   +EA KLF +M     E N+++          
Sbjct: 35  ARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKMP----ERNTISW--------- 81

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
                                     N L++ Y K G I+ + ++F++M  R+ VSWT++
Sbjct: 82  --------------------------NGLVSGYVKNGMISEARKVFDKMPERNVVSWTSM 115

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           + GY   G  +EA  LF  M E  V    ++   +L      G V EA  LF+       
Sbjct: 116 VRGYVQEGLIDEAELLFWRMPEKNV----VSWTVMLGGLIEDGRVDEARRLFD------- 164

Query: 466 IALAIEHYACYVDLLG---KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAE 522
             + ++      +++G     G++ +A ++   MP + +    +S++S   ++ +++V  
Sbjct: 165 -MIPVKDVVASTNMIGGLCSEGRLSEAREIFDEMPQR-NVVAWTSMISGYAMNNKVDV-- 220

Query: 523 MLAHQLIEAEPE-NAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYG 572
             A +L E  P+ N   +T +    + SG    A E+++ M  K ++   G
Sbjct: 221 --ARKLFEVMPDKNEVTWTAMLKGYTRSGRINEAAELFKAMPVKPVAACNG 269



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 80/174 (45%), Gaps = 18/174 (10%)

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           +++ G I  +  IF+++ ++   SW  +++GY  +    EA +LF +M E     + I+ 
Sbjct: 26  FARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKMPER----NTISW 81

Query: 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
             ++S     G++ EA  +F+  M E+ +         YV    + G I++A  +   MP
Sbjct: 82  NGLVSGYVKNGMISEARKVFDK-MPERNVVSWTSMVRGYV----QEGLIDEAELLFWRMP 136

Query: 498 MK---PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSE 548
            K     T +L  L+   R+     + +M+  + +       A+  ++  +CSE
Sbjct: 137 EKNVVSWTVMLGGLIEDGRVDEARRLFDMIPVKDV------VASTNMIGGLCSE 184


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 167/561 (29%), Positives = 300/561 (53%), Gaps = 7/561 (1%)

Query: 20  PSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKP 79
           P    + T  L S+ +      ++     Q+   AL       P+I       Y +    
Sbjct: 8   PISSRNPTKTLLSLFRFTKTLASNHQLNAQILVNALHRSLLFGPMI----FGAYIQLGSL 63

Query: 80  ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLC 139
             A + F+ + + +  SWN+I+   ++N  +   L++F+ M   G ++ +  L   +  C
Sbjct: 64  HVASKAFNHITFENLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLVDSFNLVFAVKAC 123

Query: 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSW 199
             +   +  +  H+L I     E   +V+ AL+++Y++      A +VFE++ ++N V W
Sbjct: 124 FGLSLFQGAKLFHSLAI-KLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSVIW 182

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
             MI G ++        +LF  M+R G +     +  ++ AC  +   + GK  HG    
Sbjct: 183 GVMIKGHLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCIK 242

Query: 260 CGF-DFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAM 318
             F D +  L  +L+ MY +C   L  A  +FE    +DVV+WS+II G++++G   E++
Sbjct: 243 KNFIDSNFFLQTSLVDMYMKCG-FLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESI 301

Query: 319 KLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMY 378
            +F +M  + + PNSVT  +I+ +C+    L  G  VH Y+++ G+  DV    + ++MY
Sbjct: 302 SMFRQMLADSVTPNSVTFASIVLACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMY 361

Query: 379 SKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
           +KCG I +++++F ++  ++  SW+T+I+G+G HG   EAL LF EM+     P+++T +
Sbjct: 362 AKCGCIVTAYRVFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFV 421

Query: 439 AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPM 498
           ++LSAC+H+G ++E  + F ++ ++  I    EHYAC VDLLG++GKI++A   ++ MP 
Sbjct: 422 SVLSACSHSGRIEEGWSHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPT 481

Query: 499 KPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEV 558
           +P      +L+ ACRIH R E+AE +A +L+  E + +  Y +LS + ++ G W   ++ 
Sbjct: 482 EPGASAWGALLGACRIHRRAELAEEVAKKLLPLESDQSGVYVMLSNIYADVGMWEMVKKT 541

Query: 559 WRVMRAKGLSKSYGFSRIENE 579
              M  KG+ K  GF+ IE E
Sbjct: 542 RLKMCEKGIHKIVGFTSIEIE 562



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 73/140 (52%), Gaps = 2/140 (1%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           +++ +++Q L  S +  N+    S++ AC+   + +  G  +H   +++G + D     S
Sbjct: 299 ESISMFRQMLADS-VTPNSVTFASIVLACSSLGSLKQ-GRSVHGYMIRNGVELDVKNYTS 356

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
            I MYAK     +AY++F ++P ++  SW+++IN F  +G    +L +F EM     +  
Sbjct: 357 FIDMYAKCGCIVTAYRVFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPN 416

Query: 129 AELLAGIISLCSQIGELELG 148
           +     ++S CS  G +E G
Sbjct: 417 SVTFVSVLSACSHSGRIEEG 436


>gi|357494773|ref|XP_003617675.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519010|gb|AET00634.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 758

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 171/531 (32%), Positives = 289/531 (54%), Gaps = 6/531 (1%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G  LH   +K+G      I +S++SMY K   P  AYQ F E+  +D +SW S+I  + +
Sbjct: 233 GRCLHGLVVKNGIGCLLDIQSSVLSMYCKCGVPREAYQSFSEVINKDLLSWTSMIRVYAR 292

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
            G     +  F EM          ++  I+S      ++  G+  H L+I    +     
Sbjct: 293 FGMMSDCVRFFWEMLENQVCPDGMVIGCILSGFGNSVDVYGGKAFHGLII-RRHYAPDEM 351

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           V  +LL +Y K      A R+F++     E  W  MI G          I LFR MQ  G
Sbjct: 352 VDNSLLSMYCKFGMLSFAERLFQRSQGSIEY-WNFMIVGYGRIGKNVKCIQLFREMQYLG 410

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           ++   V +   + +C +L ++  G++IH        D    ++ +L+ MY +C + ++ +
Sbjct: 411 IRSESVGIVSAIASCGQLGEINLGRSIHCNVIKGFVDETISVTNSLIEMYGKC-DKMNVS 469

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
             IF R++ +DV++W+++I  +       EA+ LF  M +E   PN+ TL+ +LS+C+  
Sbjct: 470 WRIFNRSE-RDVILWNALISAHIHVKHYEEAISLFDIMIMEDQNPNTATLVVVLSACSHL 528

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
           +FL  G  +H YI + G   ++ +G AL++MY+KCG +  S ++F+ M  +D + W  +I
Sbjct: 529 AFLEKGERLHRYINEKGFKLNLPLGTALVDMYAKCGQLEKSREVFDSMMEKDVICWNAMI 588

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
           SGYG +GY E A+++F  M+ES V+P+ IT L++LSAC HAGLV+E + +F   M+   +
Sbjct: 589 SGYGMNGYAESAIEIFNLMEESNVKPNEITFLSLLSACAHAGLVEEGKNVFAK-MQSYSV 647

Query: 467 ALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAH 526
              ++HY C VDLLG+S  +E+A ++V +MP+ P   +  +L+SAC+ H ++E+   +  
Sbjct: 648 KPNLKHYTCMVDLLGRSCNLEEAEELVLSMPIPPDGGVWGALLSACKTHNQIEMGIRIGK 707

Query: 527 QLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAK-GLSKSYGFSRI 576
             I++EPEN   Y +++ + S  G W  AE V R M+ +  + K  G+S +
Sbjct: 708 NAIDSEPENDGYYIMVANMYSSIGRWDEAENVRRTMKDRCSMGKKAGWSMV 758



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 130/525 (24%), Positives = 247/525 (47%), Gaps = 11/525 (2%)

Query: 48  LQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQN 107
           L  H   + +G+  +P I+  LIS+Y   + P S+  LF  +P++DT  WNS +      
Sbjct: 28  LPFHAVTVTTGNSTNPFIAAKLISLYDTLNHPTSSSTLFHSLPFKDTFLWNSFLKTLFSR 87

Query: 108 GFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFV 167
             Y + L  +  M     +        + S  +    +  G  +HAL    G F  +  V
Sbjct: 88  SLYPQFLSFYSLMRSENVLPNHFTFPMVASSYAHFMMIRSGMNLHALACKVGFFPENSAV 147

Query: 168 STALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG- 226
            ++ + LYS+C     A++VF+++ +R+ V+WTA++ G + +   + G++    M R G 
Sbjct: 148 GSSFVSLYSRCDEMNDAVKVFDEIPVRDVVAWTALVIGYVQNGESEMGLECISEMYRVGD 207

Query: 227 --VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
              KP   TL    LAC  L DL +G+ +HG     G      + ++++ MYC+C     
Sbjct: 208 DSQKPNARTLEGGFLACGNLGDLVSGRCLHGLVVKNGIGCLLDIQSSVLSMYCKCG-VPR 266

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
            A   F     KD++ W+S+IR Y++ G +S+ ++ F  M   ++ P+ + +  ILS   
Sbjct: 267 EAYQSFSEVINKDLLSWTSMIRVYARFGMMSDCVRFFWEMLENQVCPDGMVIGCILSGFG 326

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
               +  G   H  I++     D  + N+L++MY K G ++ + ++F + +      W  
Sbjct: 327 NSVDVYGGKAFHGLIIRRHYAPDEMVDNSLLSMYCKFGMLSFAERLF-QRSQGSIEYWNF 385

Query: 405 LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK 464
           +I GYG  G   + +QLF EMQ  G+  +++ +++ +++C   G +    ++  NV+K  
Sbjct: 386 MIVGYGRIGKNVKCIQLFREMQYLGIRSESVGIVSAIASCGQLGEINLGRSIHCNVIK-G 444

Query: 465 KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGR--LEVAE 522
            +   I      +++ GK  K+  + ++ +    +    + ++L+SA  IH +   E   
Sbjct: 445 FVDETISVTNSLIEMYGKCDKMNVSWRIFNR--SERDVILWNALISA-HIHVKHYEEAIS 501

Query: 523 MLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567
           +    ++E +  N A   ++   CS        E + R +  KG 
Sbjct: 502 LFDIMIMEDQNPNTATLVVVLSACSHLAFLEKGERLHRYINEKGF 546



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 156/313 (49%), Gaps = 6/313 (1%)

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           +ISL  +I  L+     HA+ +  G+   + F++  L+ LY   +H   +  +F  +  +
Sbjct: 14  LISLSKRITTLQSLLPFHAVTVTTGN-STNPFIAAKLISLYDTLNHPTSSSTLFHSLPFK 72

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
           +   W + +        Y   +  +  M+ E V P   T  +V  + A    +R+G  +H
Sbjct: 73  DTFLWNSFLKTLFSRSLYPQFLSFYSLMRSENVLPNHFTFPMVASSYAHFMMIRSGMNLH 132

Query: 255 GYAYCCGFDFDHH-LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGD 313
             A   GF  ++  + ++ + +Y  C E ++ A  +F+   V+DVV W++++ GY Q+G+
Sbjct: 133 ALACKVGFFPENSAVGSSFVSLYSRCDE-MNDAVKVFDEIPVRDVVAWTALVIGYVQNGE 191

Query: 314 LSEAMKLFS---RMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSI 370
               ++  S   R+  +  +PN+ TL     +C     L  G  +H  ++K G+   + I
Sbjct: 192 SEMGLECISEMYRVGDDSQKPNARTLEGGFLACGNLGDLVSGRCLHGLVVKNGIGCLLDI 251

Query: 371 GNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV 430
            +++++MY KCG    ++Q F+E+  +D +SWT++I  Y   G   + ++ F EM E+ V
Sbjct: 252 QSSVLSMYCKCGVPREAYQSFSEVINKDLLSWTSMIRVYARFGMMSDCVRFFWEMLENQV 311

Query: 431 EPDAITVLAILSA 443
            PD + +  ILS 
Sbjct: 312 CPDGMVIGCILSG 324



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 121/238 (50%), Gaps = 3/238 (1%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           +E+   G+ S +  + S I +C       + G  +HC  +K   D    ++NSLI MY K
Sbjct: 404 REMQYLGIRSESVGIVSAIASCG-QLGEINLGRSIHCNVIKGFVDETISVTNSLIEMYGK 462

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
             K   ++++F+    RD I WN++I+       Y  ++ +F  M +         L  +
Sbjct: 463 CDKMNVSWRIFNR-SERDVILWNALISAHIHVKHYEEAISLFDIMIMEDQNPNTATLVVV 521

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           +S CS +  LE G ++H  +   G F+L++ + TAL+D+Y+KC     +  VF+ M+ ++
Sbjct: 522 LSACSHLAFLEKGERLHRYINEKG-FKLNLPLGTALVDMYAKCGQLEKSREVFDSMMEKD 580

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAI 253
            + W AMISG   +   ++ I++F  M+   VKP  +T   +L ACA    +  GK +
Sbjct: 581 VICWNAMISGYGMNGYAESAIEIFNLMEESNVKPNEITFLSLLSACAHAGLVEEGKNV 638


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 183/577 (31%), Positives = 308/577 (53%), Gaps = 18/577 (3%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHF-GLQLHCTALKSGSDADPVISN 67
           Q+L +   ++  +GL++    L  +I+   ++    HF GL    +   S  + + +I N
Sbjct: 16  QSLRIIHAKMIKTGLHNTNYALSKLIE---FSVLSPHFDGLTYAISVFDSIQEPNLLIWN 72

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSL---EMFRE-MYLC 123
           ++   +A  S P SA  L+  M     IS   + N +T   F +++    + FRE   + 
Sbjct: 73  TMFRGHALSSDPVSALYLYVCM-----ISLGLVPNSYTFP-FLLKACAKSKAFREGQQIH 126

Query: 124 GFVLKAELLAGIISLCSQIGE-LELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL 182
           G VLK      +    S I   ++ GR   A  + D S    V   TAL+  Y+   +  
Sbjct: 127 GHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIX 186

Query: 183 IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
            A ++F+++ +++ VSW A+ISG  ++ NY   ++LF+ M +  VKP   T+  VL ACA
Sbjct: 187 SAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACA 246

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
           +   +  G+ +H +    GF  +  +  AL+ +Y +C E +  A  +FE    KDV+ W+
Sbjct: 247 QSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGE-VETASGLFEGLSYKDVISWN 305

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK- 361
           ++I GY+      EA+ LF  M      PN VT+L+IL +C     +  G  +H YI K 
Sbjct: 306 TLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKR 365

Query: 362 -AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
             G++   S+  +L++MY+KCG I ++ Q+F+ M  R   SW  +I G+  HG    A  
Sbjct: 366 LKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFD 425

Query: 421 LFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLL 480
           +F  M++ G+EPD IT + +LSAC+H+G++     +F ++ ++ KI   +EHY C +DLL
Sbjct: 426 IFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLL 485

Query: 481 GKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYT 540
           G SG  ++A +++++M M P   I  SL+ AC++HG +E+ E  A  LI+ EP+N+ +Y 
Sbjct: 486 GHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPKNSGSYV 545

Query: 541 LLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           LLS + + +G W    +   ++  KG+ K  G S IE
Sbjct: 546 LLSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIE 582


>gi|242076522|ref|XP_002448197.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
 gi|241939380|gb|EES12525.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
          Length = 766

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 178/560 (31%), Positives = 290/560 (51%), Gaps = 6/560 (1%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           SG   +   L S I AC+        G Q+H  A+K  S +D ++ N+L++MY+K     
Sbjct: 142 SGTMPDQFALGSAICACS-ELGDLGLGRQVHAQAIKWESGSDLIVQNALVTMYSKSGSVG 200

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAG-IISLC 139
             + LF+ +  +D ISW SII    Q G  + +L++FREM   G     E   G +   C
Sbjct: 201 DGFALFERIRDKDLISWGSIIAGLAQQGREMDALQIFREMIAEGVHHPNEFHFGSVFRAC 260

Query: 140 SQI-GELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
           S +   LE G QIH  V V    + + +   +L D+Y++C+    A +VF ++   + VS
Sbjct: 261 SVVVNSLEYGEQIHG-VSVKYQLDRNSYAGCSLSDMYARCNELDSARKVFYRIESPDLVS 319

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258
           W ++I+           + LF  M+  G++P  +T+  +L AC     L  G++IH Y  
Sbjct: 320 WNSLINAFSAKGLLSEAMVLFSEMRDSGLRPDGITVMALLCACVGYDALHQGRSIHSYLV 379

Query: 259 CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAM 318
             G   D  +S +L+ MY  C +    A  +F  T  +DVV W+SI+    Q   L +  
Sbjct: 380 KLGLGGDVIVSNSLLSMYARCLD-FSSAMDVFHETHDRDVVTWNSILTACVQHQHLEDVF 438

Query: 319 KLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMY 378
           KLFS +       + ++L  +LS+     +      VH Y  K GL  D  + N L++ Y
Sbjct: 439 KLFSLLHRSMPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKVGLVGDAMLSNGLIDTY 498

Query: 379 SKCGSITSSHQIFNEMA-ARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           +KCGS+  ++++F  M   RD  SW++LI GY   GY +EAL LF  M+  GV+P+ +T 
Sbjct: 499 AKCGSLDDANKLFEIMGTGRDVFSWSSLIVGYAQFGYAKEALDLFARMRNLGVKPNHVTF 558

Query: 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
           + +L+AC+  GLV E    ++ +  E  I    EH +C +DLL ++G++ +A K V  MP
Sbjct: 559 VGVLTACSRVGLVDEGCYYYSIMKPEYGIVPTREHCSCVLDLLARAGRLSEAAKFVDQMP 618

Query: 498 MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEE 557
            +P   +  +L++A R H  +++ +  A  ++  +P ++A Y LL  + + SGNW     
Sbjct: 619 FEPDIIMWKTLLAASRTHNDVDMGKRAAEGVLNIDPSHSAAYVLLCNIYASSGNWNEFAR 678

Query: 558 VWRVMRAKGLSKSYGFSRIE 577
           + + MR+ G+ KS G S I+
Sbjct: 679 LKKDMRSSGVQKSPGKSWIK 698



 Score =  218 bits (555), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 140/452 (30%), Positives = 228/452 (50%), Gaps = 9/452 (1%)

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           + ++SN LI+MY +   P+SA  +FD M  R+ +SW ++I    QN     ++ +F  M 
Sbjct: 81  NTILSNHLITMYGRCGAPDSARVVFDGMLDRNPVSWAAVIAAHAQNSRCADAMGLFSSML 140

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIV--DGSFELSVFVSTALLDLYSKCH 179
             G +     L   I  CS++G+L LGRQ+HA  I    GS    + V  AL+ +YSK  
Sbjct: 141 RSGTMPDQFALGSAICACSELGDLGLGRQVHAQAIKWESGS---DLIVQNALVTMYSKSG 197

Query: 180 HWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV-KPTRVTLTIVL 238
                  +FE++  ++ +SW ++I+G          + +FR M  EGV  P       V 
Sbjct: 198 SVGDGFALFERIRDKDLISWGSIIAGLAQQGREMDALQIFREMIAEGVHHPNEFHFGSVF 257

Query: 239 LACA-ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKD 297
            AC+  +  L  G+ IHG +     D + +   +L  MY  C E L  AR +F R +  D
Sbjct: 258 RACSVVVNSLEYGEQIHGVSVKYQLDRNSYAGCSLSDMYARCNE-LDSARKVFYRIESPD 316

Query: 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHC 357
           +V W+S+I  +S  G LSEAM LFS MR   + P+ +T++A+L +C     L  G  +H 
Sbjct: 317 LVSWNSLINAFSAKGLLSEAMVLFSEMRDSGLRPDGITVMALLCACVGYDALHQGRSIHS 376

Query: 358 YIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEE 417
           Y++K GL  DV + N+L++MY++C   +S+  +F+E   RD V+W ++++    H + E+
Sbjct: 377 YLVKLGLGGDVIVSNSLLSMYARCLDFSSAMDVFHETHDRDVVTWNSILTACVQHQHLED 436

Query: 418 ALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYV 477
             +LF  +  S    D I++  +LSA    G  +  + +     K   +  A+      +
Sbjct: 437 VFKLFSLLHRSMPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKVGLVGDAMLSNG-LI 495

Query: 478 DLLGKSGKIEDACKVVSTMPMKPSTRILSSLV 509
           D   K G ++DA K+   M         SSL+
Sbjct: 496 DTYAKCGSLDDANKLFEIMGTGRDVFSWSSLI 527



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 122/430 (28%), Positives = 212/430 (49%), Gaps = 16/430 (3%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
             L ++++ +     + N     SV +AC+       +G Q+H  ++K   D +     S
Sbjct: 232 DALQIFREMIAEGVHHPNEFHFGSVFRACSVVVNSLEYGEQIHGVSVKYQLDRNSYAGCS 291

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           L  MYA+ ++ +SA ++F  +   D +SWNS+IN F+  G    ++ +F EM   G    
Sbjct: 292 LSDMYARCNELDSARKVFYRIESPDLVSWNSLINAFSAKGLLSEAMVLFSEMRDSGLRPD 351

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
              +  ++  C     L  GR IH+ ++  G     V VS +LL +Y++C  +  A+ VF
Sbjct: 352 GITVMALLCACVGYDALHQGRSIHSYLVKLG-LGGDVIVSNSLLSMYARCLDFSSAMDVF 410

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
            +   R+ V+W ++++ C+  Q+ +    LF  + R      R++L  VL A AEL    
Sbjct: 411 HETHDRDVVTWNSILTACVQHQHLEDVFKLFSLLHRSMPSLDRISLNNVLSASAELGYFE 470

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV-KDVVIWSSIIRG 307
             K +H YA+  G   D  LS  L+  Y +C  +L  A  +FE     +DV  WSS+I G
Sbjct: 471 MVKQVHAYAFKVGLVGDAMLSNGLIDTYAKCG-SLDDANKLFEIMGTGRDVFSWSSLIVG 529

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCY---IMKA-- 362
           Y+Q G   EA+ LF+RMR   ++PN VT + +L++C+R   +  G    CY   IMK   
Sbjct: 530 YAQFGYAKEALDLFARMRNLGVKPNHVTFVGVLTACSRVGLVDEG----CYYYSIMKPEY 585

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA-ARDFVSWTTLISGYGFHG---YGEEA 418
           G+       + ++++ ++ G ++ + +  ++M    D + W TL++    H     G+ A
Sbjct: 586 GIVPTREHCSCVLDLLARAGRLSEAAKFVDQMPFEPDIIMWKTLLAASRTHNDVDMGKRA 645

Query: 419 LQLFLEMQES 428
            +  L +  S
Sbjct: 646 AEGVLNIDPS 655



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 98/312 (31%), Positives = 165/312 (52%), Gaps = 7/312 (2%)

Query: 139 CSQIGELELGRQIHALVIV----DGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           CS++  L  GR +H  ++     D     +  +S  L+ +Y +C     A  VF+ M+ R
Sbjct: 52  CSRLRSLPQGRLVHRHLLASSARDRFLAHNTILSNHLITMYGRCGAPDSARVVFDGMLDR 111

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
           N VSW A+I+    +      + LF +M R G  P +  L   + AC+EL DL  G+ +H
Sbjct: 112 NPVSWAAVIAAHAQNSRCADAMGLFSSMLRSGTMPDQFALGSAICACSELGDLGLGRQVH 171

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
             A       D  +  AL+ MY + + ++     +FER + KD++ W SII G +Q G  
Sbjct: 172 AQAIKWESGSDLIVQNALVTMYSK-SGSVGDGFALFERIRDKDLISWGSIIAGLAQQGRE 230

Query: 315 SEAMKLFSRMRLERI-EPNSVTLLAILSSCT-RQSFLSHGLGVHCYIMKAGLNFDVSIGN 372
            +A+++F  M  E +  PN     ++  +C+   + L +G  +H   +K  L+ +   G 
Sbjct: 231 MDALQIFREMIAEGVHHPNEFHFGSVFRACSVVVNSLEYGEQIHGVSVKYQLDRNSYAGC 290

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
           +L +MY++C  + S+ ++F  + + D VSW +LI+ +   G   EA+ LF EM++SG+ P
Sbjct: 291 SLSDMYARCNELDSARKVFYRIESPDLVSWNSLINAFSAKGLLSEAMVLFSEMRDSGLRP 350

Query: 433 DAITVLAILSAC 444
           D ITV+A+L AC
Sbjct: 351 DGITVMALLCAC 362



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 106/211 (50%), Gaps = 7/211 (3%)

Query: 241 CAELRDLRNGKAIHGY--AYCCGFDFDHH---LSAALMHMYCECTEALHPARIIFERTKV 295
           C+ LR L  G+ +H +  A      F  H   LS  L+ MY  C  A   AR++F+    
Sbjct: 52  CSRLRSLPQGRLVHRHLLASSARDRFLAHNTILSNHLITMYGRCG-APDSARVVFDGMLD 110

Query: 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV 355
           ++ V W+++I  ++Q+   ++AM LFS M      P+   L + + +C+    L  G  V
Sbjct: 111 RNPVSWAAVIAAHAQNSRCADAMGLFSSMLRSGTMPDQFALGSAICACSELGDLGLGRQV 170

Query: 356 HCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYG 415
           H   +K     D+ + NAL+ MYSK GS+     +F  +  +D +SW ++I+G    G  
Sbjct: 171 HAQAIKWESGSDLIVQNALVTMYSKSGSVGDGFALFERIRDKDLISWGSIIAGLAQQGRE 230

Query: 416 EEALQLFLEMQESGV-EPDAITVLAILSACN 445
            +ALQ+F EM   GV  P+     ++  AC+
Sbjct: 231 MDALQIFREMIAEGVHHPNEFHFGSVFRACS 261


>gi|50080253|gb|AAT69588.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|222632650|gb|EEE64782.1| hypothetical protein OsJ_19638 [Oryza sativa Japonica Group]
          Length = 870

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 184/578 (31%), Positives = 311/578 (53%), Gaps = 17/578 (2%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           F E+ L LY + L  +G+  +    P V++ C         G ++H   L+ G   +  +
Sbjct: 177 FLEEALDLYYRMLW-AGMRPDVYTFPCVLRTCG-GIPDWRMGREVHAHVLRFGFGDEVDV 234

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
            N+L++MYAK     +A ++FD M   D ISWN++I    +N      LE+F  M     
Sbjct: 235 LNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTM----- 289

Query: 126 VLKAELLAGIISLCS------QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH 179
            L+ E+   ++++ S       + E+   +++H   +  G F + V    +L+ +Y+   
Sbjct: 290 -LENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRG-FAIDVAFCNSLIQMYTSLG 347

Query: 180 HWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLL 239
               A ++F +M  ++ +SWTAMISG   +   D  ++++  M+   V P  VT+   L 
Sbjct: 348 RMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALA 407

Query: 240 ACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVV 299
           ACA L  L  G  +H  A   GF     ++ AL+ MY + ++ +  A  +F+    KDVV
Sbjct: 408 ACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAK-SKHIDKAIEVFKFMAEKDVV 466

Query: 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
            WSS+I G+  +    EA+  F R  L  ++PNSVT +A LS+C     L  G  +H Y+
Sbjct: 467 SWSSMIAGFCFNHRSFEALYYF-RYMLGHVKPNSVTFIAALSACAATGALRSGKEIHAYV 525

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEAL 419
           ++ G+  +  + NAL+++Y KCG  + +   F+  + +D VSW  ++SG+  HG G+ AL
Sbjct: 526 LRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIAL 585

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479
            LF +M E G  PD +T +A+L AC+ AG+V +   LF+ + ++  I   ++HYAC VDL
Sbjct: 586 SLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIVPNLKHYACMVDL 645

Query: 480 LGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANY 539
           L + GK+ +A  +++ MP+KP   +  +L++ CRIH  +E+ E+ A  ++E EP + A +
Sbjct: 646 LSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGELAAKVILELEPNDVAYH 705

Query: 540 TLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            LL  + +++G W     V + MR KGL +  G S +E
Sbjct: 706 VLLCDLYTDAGKWAQVARVRKTMREKGLEQDNGCSWVE 743



 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 156/539 (28%), Positives = 271/539 (50%), Gaps = 32/539 (5%)

Query: 34  IKACAYAQT-HQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYR 92
           ++ACA A   H  FGL+L                N+++SM  +F +   A+++F +MP R
Sbjct: 116 MRACARADAEHPSFGLRL---------------GNAMLSMLVRFGEIWHAWRVFAKMPER 160

Query: 93  DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIH 152
           D  SWN ++  + + GF   +L+++  M   G          ++  C  I +  +GR++H
Sbjct: 161 DVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVH 220

Query: 153 ALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNY 212
           A V+  G F   V V  AL+ +Y+KC   + A +VF+ M + + +SW AMI+G  ++   
Sbjct: 221 AHVLRFG-FGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFENHEC 279

Query: 213 DTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAAL 272
           + G++LF  M    V+P  +T+T V +A   L ++   K +HG+A   GF  D     +L
Sbjct: 280 EAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSL 339

Query: 273 MHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPN 332
           + MY      +  A  IF R + KD + W+++I GY ++G   +A+++++ M L  + P+
Sbjct: 340 IQMYTSLGR-MGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVSPD 398

Query: 333 SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFN 392
            VT+ + L++C     L  G+ +H      G    V + NAL+ MY+K   I  + ++F 
Sbjct: 399 DVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFK 458

Query: 393 EMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKE 452
            MA +D VSW+++I+G+ F+    EAL  F  M    V+P+++T +A LSAC   G ++ 
Sbjct: 459 FMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYML-GHVKPNSVTFIAALSACAATGALRS 517

Query: 453 AETLFNNVMKEKKIALAIEHYA--CYVDLLGKSGKIEDACKVVSTMPMKPSTR---ILSS 507
            + +   V+   +  +  E Y     +DL  K G+   A    S    K       +LS 
Sbjct: 518 GKEIHAYVL---RCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSG 574

Query: 508 LVSACRIHGRLEVAEMLAHQLIE-AEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAK 565
            V+    HG  ++A  L +Q++E  E  +   +  L   CS +G  +   E++ +M  K
Sbjct: 575 FVA----HGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEK 629



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 3/144 (2%)

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           S+ +R     G L++A+ L          P+    +A+   C  +  +  G+        
Sbjct: 68  SAALRALCSHGQLAQALWLLES---SPEPPDEGAYVALFRLCEWRRAVDAGMRACARADA 124

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
              +F + +GNA+++M  + G I  + ++F +M  RD  SW  ++ GYG  G+ EEAL L
Sbjct: 125 EHPSFGLRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDL 184

Query: 422 FLEMQESGVEPDAITVLAILSACN 445
           +  M  +G+ PD  T   +L  C 
Sbjct: 185 YYRMLWAGMRPDVYTFPCVLRTCG 208


>gi|147812109|emb|CAN61522.1| hypothetical protein VITISV_010801 [Vitis vinifera]
          Length = 674

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 172/542 (31%), Positives = 287/542 (52%), Gaps = 16/542 (2%)

Query: 45  HFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSII--- 101
           H G QLH   +K G      + N ++ +Y K  +     ++FDEMP ++ +SWN++I   
Sbjct: 90  HGGKQLHAHVIKLGXCNLLSLQNQVLHVYVKCKEFNDVCKMFDEMPLKNVVSWNTLICGV 149

Query: 102 ---NC---FTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALV 155
              NC     + GF+      FR+M L         L G++    ++ ++ + RQ+H  +
Sbjct: 150 VEGNCKFALVRLGFHC-----FRQMVLEMMAPNCITLNGLLRASIELNDVGICRQLHCFI 204

Query: 156 IVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTG 215
           +  G F+ + FV +AL+D Y+K      A   F+++  R+ V W  M+S    +      
Sbjct: 205 LKSG-FDSNCFVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYALNGVQGKA 263

Query: 216 IDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHM 275
             +F+ M+ EGVK    T T ++ +C  L     GK +HG      FD D  +++AL+ M
Sbjct: 264 FGVFKLMRLEGVKGDXFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVLVASALVDM 323

Query: 276 YCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVT 335
           Y +  E +  AR  F+   VK++V W+++  GY Q GD  E M+L   M      P+ + 
Sbjct: 324 YSK-NENIEDARKAFDGMJVKNIVSWTTMXVGYGQHGDGKEXMRLLQEMIRVYTYPDELA 382

Query: 336 LLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA 395
           L +ILSSC   S  S  + VH Y+++ G    +SI NAL++ YSKCGSI S+ Q F+ +A
Sbjct: 383 LASILSSCGNLSATSEVVQVHAYVVENGFEAFLSIANALVSAYSKCGSIGSAFQSFSSVA 442

Query: 396 ARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAET 455
             D +SWT+L+  Y FHG  ++ + +F ++  S V PD +  L +LSAC H G V E   
Sbjct: 443 EPDIISWTSLMGAYAFHGLSKQGVDVFEKILSSNVRPDKVAFLGVLSACAHGGFVLEGLH 502

Query: 456 LFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIH 515
            FN ++   +I    EHY   +DLLG++G +++A  ++++MP++P +  L + + AC+++
Sbjct: 503 YFNLMINVYQIMPDSEHYTSIIDLLGRAGFLDEAVNLLTSMPVEPRSDTLGAFLGACKVY 562

Query: 516 GRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSR 575
             + +A   + +L   EP     Y+L+S + +  G+W     V ++MR +   K  G S 
Sbjct: 563 RNVGLARWASEKLFVMEPNEPGKYSLMSNMYASVGHWFDVARVRKLMRERCDFKVPGCSW 622

Query: 576 IE 577
           +E
Sbjct: 623 ME 624



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 115/421 (27%), Positives = 208/421 (49%), Gaps = 11/421 (2%)

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           + + +++G L  G+Q+HA VI  G   L + +   +L +Y KC  +    ++F++M ++N
Sbjct: 80  LKISAKLGFLHGGKQLHAHVIKLGXCNL-LSLQNQVLHVYVKCKEFNDVCKMFDEMPLKN 138

Query: 196 EVSWTAMISGCIDSQN----YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGK 251
            VSW  +I G ++          G   FR M  E + P  +TL  +L A  EL D+   +
Sbjct: 139 VVSWNTLICGVVEGNCKFALVRLGFHCFRQMVLEMMAPNCITLNGLLRASIELNDVGICR 198

Query: 252 AIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQS 311
            +H +    GFD +  + +AL+  Y +    +  A+  F+    +D+V+W+ ++  Y+ +
Sbjct: 199 QLHCFILKSGFDSNCFVGSALVDSYAK-FGLVDEAQSAFDEVSSRDLVLWNVMVSCYALN 257

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
           G   +A  +F  MRLE ++ +  T  ++++SC        G  VH  I++   + DV + 
Sbjct: 258 GVQGKAFGVFKLMRLEGVKGDXFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVLVA 317

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
           +AL++MYSK  +I  + + F+ M  ++ VSWTT+  GYG HG G+E ++L  EM      
Sbjct: 318 SALVDMYSKNENIEDARKAFDGMJVKNIVSWTTMXVGYGQHGDGKEXMRLLQEMIRVYTY 377

Query: 432 PDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACK 491
           PD + + +ILS+C +     E   +   V+ E      +      V    K G I  A +
Sbjct: 378 PDELALASILSSCGNLSATSEVVQVHAYVV-ENGFEAFLSIANALVSAYSKCGSIGSAFQ 436

Query: 492 VVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLSMVCSES 549
             S++  +P     +SL+ A   HG  +    +  +++ +   P+  A   +LS  C+  
Sbjct: 437 SFSSVA-EPDIISWTSLMGAYAFHGLSKQGVDVFEKILSSNVRPDKVAFLGVLS-ACAHG 494

Query: 550 G 550
           G
Sbjct: 495 G 495



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 103/243 (42%), Gaps = 55/243 (22%)

Query: 339 ILSSCTRQSFLSHGLGV-------------HCYIMKAGLNFDVSIGNALMNMYSKCGSIT 385
           ++ SC+  SF SH L +             H +++K G    +S+ N ++++Y KC    
Sbjct: 66  LVDSCSTHSFSSHALKISAKLGFLHGGKQLHAHVIKLGXCNLLSLQNQVLHVYVKCKEFN 125

Query: 386 SSHQIFNEMAARDFVSWTTLISGY------------GFHGYGEEALQLF----------- 422
              ++F+EM  ++ VSW TLI G             GFH + +  L++            
Sbjct: 126 DVCKMFDEMPLKNVVSWNTLICGVVEGNCKFALVRLGFHCFRQMVLEMMAPNCITLNGLL 185

Query: 423 ---LEMQE-------------SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
              +E+ +             SG + +     A++ +    GLV EA++ F+ V   + +
Sbjct: 186 RASIELNDVGICRQLHCFILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAFDEV-SSRDL 244

Query: 467 ALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAH 526
            L     +CY  L G  GK     K++    +K      +S++++C + G   + + + H
Sbjct: 245 VLWNVMVSCYA-LNGVQGKAFGVFKLMRLEGVKGDXFTFTSMINSCGVLGSCGLGKQV-H 302

Query: 527 QLI 529
            LI
Sbjct: 303 GLI 305


>gi|356565618|ref|XP_003551036.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Glycine max]
          Length = 619

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 185/563 (32%), Positives = 282/563 (50%), Gaps = 43/563 (7%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           EL  +G+  +  + P V+KACA        G  +H   +  G +++  + NS++ MY+K 
Sbjct: 93  ELRRNGVVPDGYVFPKVLKACAQLSRFGS-GRGVHKDVVVFGEESNLQVRNSVLDMYSKC 151

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
               SA Q+FDEM  RD  SWNS+++ +  NG   +++E+   M   G            
Sbjct: 152 GDVGSARQVFDEMSERDVFSWNSMMSGYVWNGLPHKAVEVLGVMKKDG------------ 199

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
             C                      E  V     ++D Y +      A RVF ++   N 
Sbjct: 200 --C--------------------GCEPDVVTWNTVMDAYCRMGQCCEASRVFGEIEDPNV 237

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREG-VKPTRVTLTIVLLACAELRDLRNGKAIHG 255
           +SWT +ISG      +D  + +FR M   G V P    L+ VL++C  L  L +GK IHG
Sbjct: 238 ISWTILISGYAGVGRHDVSLGIFRQMVNVGMVSPDVDALSGVLVSCRHLGALASGKEIHG 297

Query: 256 YAY--CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGD 313
           Y     CG  F     AAL+ +Y      L  A  +F R    DVV W+++I G    G 
Sbjct: 298 YGLKIMCGDVFYRSAGAALLMLYAGWGR-LDCADNVFWRMDKSDVVTWNAMIFGLVDVGL 356

Query: 314 LSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNA 373
           +  A+  F  M+   +  +  T+ +IL  C     L  G  +H Y+ K   +  + + NA
Sbjct: 357 VDLALDCFREMQGRGVGIDGRTISSILPVCD----LRCGKEIHAYVRKCNFSGVIPVYNA 412

Query: 374 LMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPD 433
           L++MYS  G I  ++ +F+ M ARD VSW T+I G+G HG G+ AL+L  EM  SGV PD
Sbjct: 413 LIHMYSIRGCIAYAYSVFSTMVARDLVSWNTIIGGFGTHGLGQTALELLQEMSGSGVRPD 472

Query: 434 AITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVV 493
            +T    LSAC+H+GLV E   LF  + K+  +  A EH++C VD+L ++G++EDA   +
Sbjct: 473 LVTFSCALSACSHSGLVNEGIELFYRMTKDFSMTPAREHFSCVVDMLARAGRLEDAFHFI 532

Query: 494 STMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWL 553
           + MP +P+  +  +L++AC+ H  + V ++ A +LI  EP  A +Y  LS + S +G W 
Sbjct: 533 NQMPQEPNNHVWGALLAACQEHQNISVGKLAAEKLISLEPHEAGHYVTLSNIYSRAGRWD 592

Query: 554 GAEEVWRVMRAKGLSKSYGFSRI 576
            A  V ++M   GL K  G S +
Sbjct: 593 DAARVRKMMDGHGLLKPSGHSLV 615



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 105/417 (25%), Positives = 189/417 (45%), Gaps = 42/417 (10%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPY 91
           S+++AC      +    QLH   L +GS  +      LI +YA  +   SA  L  ++ +
Sbjct: 10  SLLQACKTLNQAK----QLHHRILLTGSHHNHFFVTKLIQIYADSNDLRSAVTLLHQISH 65

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQI 151
            +  ++ SI++  +++G   + ++ + E+   G V    +   ++  C+Q+     GR +
Sbjct: 66  PNVFAFTSILSFHSRHGLGHQCIQTYAELRRNGVVPDGYVFPKVLKACAQLSRFGSGRGV 125

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQN 211
           H  V+V G  E ++ V  ++LD+YSKC     A +VF++M  R+  SW +M+SG + +  
Sbjct: 126 HKDVVVFGE-ESNLQVRNSVLDMYSKCGDVGSARQVFDEMSERDVFSWNSMMSGYVWNGL 184

Query: 212 YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAA 271
               +++   M+++G                                 CG + D      
Sbjct: 185 PHKAVEVLGVMKKDG---------------------------------CGCEPDVVTWNT 211

Query: 272 LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM-RLERIE 330
           +M  YC   +    +R +F   +  +V+ W+ +I GY+  G    ++ +F +M  +  + 
Sbjct: 212 VMDAYCRMGQCCEASR-VFGEIEDPNVISWTILISGYAGVGRHDVSLGIFRQMVNVGMVS 270

Query: 331 PNSVTLLAILSSCTRQSFLSHGLGVHCYIMK--AGLNFDVSIGNALMNMYSKCGSITSSH 388
           P+   L  +L SC     L+ G  +H Y +K   G  F  S G AL+ +Y+  G +  + 
Sbjct: 271 PDVDALSGVLVSCRHLGALASGKEIHGYGLKIMCGDVFYRSAGAALLMLYAGWGRLDCAD 330

Query: 389 QIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
            +F  M   D V+W  +I G    G  + AL  F EMQ  GV  D  T+ +IL  C+
Sbjct: 331 NVFWRMDKSDVVTWNAMIFGLVDVGLVDLALDCFREMQGRGVGIDGRTISSILPVCD 387



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 138/284 (48%), Gaps = 7/284 (2%)

Query: 237 VLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK 296
           +L AC   + L   K +H      G   +H     L+ +Y +  + L  A  +  +    
Sbjct: 11  LLQAC---KTLNQAKQLHHRILLTGSHHNHFFVTKLIQIYADSND-LRSAVTLLHQISHP 66

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVH 356
           +V  ++SI+  +S+ G   + ++ ++ +R   + P+      +L +C + S    G GVH
Sbjct: 67  NVFAFTSILSFHSRHGLGHQCIQTYAELRRNGVVPDGYVFPKVLKACAQLSRFGSGRGVH 126

Query: 357 CYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGE 416
             ++  G   ++ + N++++MYSKCG + S+ Q+F+EM+ RD  SW +++SGY ++G   
Sbjct: 127 KDVVVFGEESNLQVRNSVLDMYSKCGDVGSARQVFDEMSERDVFSWNSMMSGYVWNGLPH 186

Query: 417 EALQLFLEMQES--GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYA 474
           +A+++   M++   G EPD +T   ++ A    G   EA  +F  +     I+  I   +
Sbjct: 187 KAVEVLGVMKKDGCGCEPDVVTWNTVMDAYCRMGQCCEASRVFGEIEDPNVISWTIL-IS 245

Query: 475 CYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRL 518
            Y  +      +    ++V+   + P    LS ++ +CR  G L
Sbjct: 246 GYAGVGRHDVSLGIFRQMVNVGMVSPDVDALSGVLVSCRHLGAL 289


>gi|302764012|ref|XP_002965427.1| hypothetical protein SELMODRAFT_84339 [Selaginella moellendorffii]
 gi|300166241|gb|EFJ32847.1| hypothetical protein SELMODRAFT_84339 [Selaginella moellendorffii]
          Length = 495

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 154/486 (31%), Positives = 271/486 (55%), Gaps = 2/486 (0%)

Query: 65  ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG 124
           + NSL++MY K    E A + F+ M +R+ ISW++++  + Q G + ++L +F++M   G
Sbjct: 12  VGNSLLNMYGKCGGVEEAREFFESMTHRNVISWSTMVAAYAQRGDHDQALVLFQKMEEEG 71

Query: 125 FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
                     ++  C+    +E G  IH L       ++ + V TAL+ +Y KC   + A
Sbjct: 72  VEPNEVTFLSVLDACANAEAVEQGEMIHRLA-ARKKLDVGLIVGTALVGMYGKCSRLIEA 130

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
            +VF+ +V ++ V+W+ MIS      +    I LF  M  +GV+P  + L  +L AC+  
Sbjct: 131 RQVFDGIVEKDVVTWSTMISAYAQLGHVREAIQLFGYMNLDGVRPNEIILMSILGACSSA 190

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
             L  GK  H     CGF  D      L+ MY +C + L  A+ +F   + +D++ WS++
Sbjct: 191 GALAEGKMTHELVVICGFGADVSTGNTLIKMYGKCGD-LASAKAVFGGMERRDLISWSAM 249

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
           +   ++ G   +A   F RM LE ++P+ VT +++L +C+    L  G  +H  I   G 
Sbjct: 250 LAVIAEHGHCKDAFVHFRRMDLEGVKPDYVTFVSLLDACSLLGALVEGNVIHTRIRAEGF 309

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
              + I N+L++MY KCGS+ ++  IF+ M+ R+ ++WTT+I+    H  G+EAL+LF E
Sbjct: 310 QSVMYIENSLIDMYGKCGSLQAARGIFDRMSHRNVITWTTMITACVQHEQGKEALELFEE 369

Query: 425 MQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSG 484
           M+++GV+PD +  L+I+ +C+H+GLV+E    F  +++++     +EH+   +DLLG+SG
Sbjct: 370 MEKAGVQPDQVAFLSIIHSCSHSGLVEEGRIYFLKMVEDQSFTPGVEHFVGMLDLLGRSG 429

Query: 485 KIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSM 544
           K+ +A +++  MP++P     ++L+SAC+ H   E A  +A  ++   P +A  Y   S 
Sbjct: 430 KLNEAEELMEFMPVEPGVVGWNTLLSACKTHNDTERAGRVAGGMLVLGPGHAGPYVSFSN 489

Query: 545 VCSESG 550
           + S  G
Sbjct: 490 ILSGKG 495



 Score =  211 bits (538), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 125/388 (32%), Positives = 208/388 (53%), Gaps = 8/388 (2%)

Query: 166 FVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
           FV  +LL++Y KC     A   FE M  RN +SW+ M++      ++D  + LF+ M+ E
Sbjct: 11  FVGNSLLNMYGKCGGVEEAREFFESMTHRNVISWSTMVAAYAQRGDHDQALVLFQKMEEE 70

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
           GV+P  VT   VL ACA    +  G+ IH  A     D    +  AL+ MY +C+  L  
Sbjct: 71  GVEPNEVTFLSVLDACANAEAVEQGEMIHRLAARKKLDVGLIVGTALVGMYGKCSR-LIE 129

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           AR +F+    KDVV WS++I  Y+Q G + EA++LF  M L+ + PN + L++IL +C+ 
Sbjct: 130 ARQVFDGIVEKDVVTWSTMISAYAQLGHVREAIQLFGYMNLDGVRPNEIILMSILGACSS 189

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
              L+ G   H  ++  G   DVS GN L+ MY KCG + S+  +F  M  RD +SW+ +
Sbjct: 190 AGALAEGKMTHELVVICGFGADVSTGNTLIKMYGKCGDLASAKAVFGGMERRDLISWSAM 249

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK- 464
           ++    HG+ ++A   F  M   GV+PD +T +++L AC+  G + E   +   +  E  
Sbjct: 250 LAVIAEHGHCKDAFVHFRRMDLEGVKPDYVTFVSLLDACSLLGALVEGNVIHTRIRAEGF 309

Query: 465 KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEML 524
           +  + IE+    +D+ GK G ++ A  +   M  + +    +++++AC  H + + A  L
Sbjct: 310 QSVMYIEN--SLIDMYGKCGSLQAARGIFDRMSHR-NVITWTTMITACVQHEQGKEALEL 366

Query: 525 AHQLIEA--EPENAANYTLLSMVCSESG 550
             ++ +A  +P+  A  +++   CS SG
Sbjct: 367 FEEMEKAGVQPDQVAFLSIIH-SCSHSG 393



 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 119/417 (28%), Positives = 200/417 (47%), Gaps = 12/417 (2%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           ++Q L L+ Q++   G+  N     SV+ ACA A+  +  G  +H  A +   D   ++ 
Sbjct: 57  HDQALVLF-QKMEEEGVEPNEVTFLSVLDACANAEAVEQ-GEMIHRLAARKKLDVGLIVG 114

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
            +L+ MY K S+   A Q+FD +  +D ++W+++I+ + Q G    ++++F  M L G  
Sbjct: 115 TALVGMYGKCSRLIEARQVFDGIVEKDVVTWSTMISAYAQLGHVREAIQLFGYMNLDGVR 174

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
               +L  I+  CS  G L  G+  H LV++ G F   V     L+ +Y KC     A  
Sbjct: 175 PNEIILMSILGACSSAGALAEGKMTHELVVICG-FGADVSTGNTLIKMYGKCGDLASAKA 233

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VF  M  R+ +SW+AM++   +  +       FR M  EGVKP  VT   +L AC+ L  
Sbjct: 234 VFGGMERRDLISWSAMLAVIAEHGHCKDAFVHFRRMDLEGVKPDYVTFVSLLDACSLLGA 293

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L  G  IH      GF    ++  +L+ MY +C  +L  AR IF+R   ++V+ W+++I 
Sbjct: 294 LVEGNVIHTRIRAEGFQSVMYIENSLIDMYGKCG-SLQAARGIFDRMSHRNVITWTTMIT 352

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
              Q     EA++LF  M    ++P+ V  L+I+ SC+    +  G     Y +K   + 
Sbjct: 353 ACVQHEQGKEALELFEEMEKAGVQPDQVAFLSIIHSCSHSGLVEEG---RIYFLKMVEDQ 409

Query: 367 DVSIG----NALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFHGYGEEA 418
             + G      ++++  + G +  + ++   M      V W TL+S    H   E A
Sbjct: 410 SFTPGVEHFVGMLDLLGRSGKLNEAEELMEFMPVEPGVVGWNTLLSACKTHNDTERA 466


>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Glycine max]
          Length = 1033

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 190/557 (34%), Positives = 299/557 (53%), Gaps = 7/557 (1%)

Query: 25  SNTAILPSVIKACAYAQTHQHFGLQLHCTALKSG-SDADPVISNSLISMYAKFSKPESAY 83
           S+ A+L S     +  +  +  G ++H   +++   D   +I N+L+++YAK +  ++A 
Sbjct: 351 SSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNAR 410

Query: 84  QLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIG 143
            +F  MP +DT+SWNSII+    N  +  ++  F  M   G V     +   +S C+ +G
Sbjct: 411 SIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMVPSKFSVISTLSSCASLG 470

Query: 144 ELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMI 203
            + LG+QIH   I  G  +L V VS ALL LY++        +VF  M   ++VSW + I
Sbjct: 471 WIMLGQQIHGEGIKCG-LDLDVSVSNALLTLYAETDCMEEYQKVFFLMPEYDQVSWNSFI 529

Query: 204 SGCIDSQ-NYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGF 262
                S+ +    I  F  M + G KP RVT   +L A + L  L  G+ IH        
Sbjct: 530 GALATSEASVLQAIKYFLEMMQAGWKPNRVTFINILSAVSSLSLLELGRQIHALILKHSV 589

Query: 263 DFDHHLSAALMHMYCECTEALHPARIIFER-TKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
             D+ +   L+  Y +C E +    IIF R ++ +D V W+++I GY  +G L +AM L 
Sbjct: 590 ADDNAIENTLLAFYGKC-EQMEDCEIIFSRMSERRDEVSWNAMISGYIHNGILHKAMGLV 648

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
             M  +    +  TL  +LS+C   + L  G+ VH   ++A L  +V +G+AL++MY+KC
Sbjct: 649 WLMMQKGQRLDDFTLATVLSACASVATLERGMEVHACAIRACLEAEVVVGSALVDMYAKC 708

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
           G I  + + F  M  R+  SW ++ISGY  HG+G +AL+LF +M++ G  PD +T + +L
Sbjct: 709 GKIDYASRFFELMPVRNIYSWNSMISGYARHGHGGKALKLFTQMKQHGQLPDHVTFVGVL 768

Query: 442 SACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPS 501
           SAC+H GLV E    F ++ +  ++A  IEH++C VDLLG++G ++   + + TMPM P+
Sbjct: 769 SACSHVGLVDEGFEHFKSMGEVYELAPRIEHFSCMVDLLGRAGDVKKLEEFIKTMPMNPN 828

Query: 502 TRILSSLVSA-CRIHGR-LEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVW 559
             I  +++ A CR + R  E+    A  LIE EP NA NY LLS + +  G W   EE  
Sbjct: 829 ALIWRTILGACCRANSRNTELGRRAAKMLIELEPLNAVNYVLLSNMHAAGGKWEDVEEAR 888

Query: 560 RVMRAKGLSKSYGFSRI 576
             MR   + K  G S +
Sbjct: 889 LAMRNAEVKKEAGCSWV 905



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 118/416 (28%), Positives = 217/416 (52%), Gaps = 17/416 (4%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           QLH    K+G  +D    N+L++++ +     SA +LFDEMP ++ +SW+ +++ + QNG
Sbjct: 60  QLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGYAQNG 119

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGE--LELGRQIHALVIVDGSFELSVF 166
               +  +FR +   G +     +   +  C ++G   L+LG +IH L I    +   + 
Sbjct: 120 MPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGL-ISKSPYASDMV 178

Query: 167 VSTALLDLYSKCHHWL-IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
           +S  L+ +YS C   +  A RVFE++ ++   SW ++IS      +  +   LF +MQRE
Sbjct: 179 LSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSSMQRE 238

Query: 226 GV----KPTRVTL-TIVLLACAELR-DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCEC 279
                 +P   T  ++V +AC+ +   L   + +        F  D ++ +AL+  +   
Sbjct: 239 ATELNCRPNEYTFCSLVTVACSLVDCGLTLLEQMLARIEKSSFVKDLYVGSALVSGFAR- 297

Query: 280 TEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAI 339
              +  A++IFE+   ++ V  + ++ G ++     EA K+F  M+ + +E N+ +   +
Sbjct: 298 YGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEMK-DLVEINASSYAVL 356

Query: 340 LSSCTRQSFLSH----GLGVHCYIMKAGL-NFDVSIGNALMNMYSKCGSITSSHQIFNEM 394
           LS+ T  S L      G  VH Y+++  L +  + IGNAL+N+Y+KC +I ++  IF  M
Sbjct: 357 LSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNARSIFQLM 416

Query: 395 AARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLV 450
            ++D VSW ++ISG   +   EEA+  F  M+ +G+ P   +V++ LS+C   G +
Sbjct: 417 PSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMVPSKFSVISTLSSCASLGWI 472



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 120/434 (27%), Positives = 211/434 (48%), Gaps = 17/434 (3%)

Query: 21  SGLYSNTAILPSVIKACA-YAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKP 79
           +GL  N   + S ++AC          G+++H    KS   +D V+SN L+SMY+  S  
Sbjct: 134 AGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYASDMVLSNVLMSMYSHCSAS 193

Query: 80  -ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE-----LLA 133
            + A ++F+E+  + + SWNSII+ + + G  + + ++F  M      L          +
Sbjct: 194 IDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSSMQREATELNCRPNEYTFCS 253

Query: 134 GIISLCSQIG-ELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV 192
            +   CS +   L L  Q+ A  I   SF   ++V +AL+  +++      A  +FEQM 
Sbjct: 254 LVTVACSLVDCGLTLLEQMLAR-IEKSSFVKDLYVGSALVSGFARYGLIDSAKMIFEQMD 312

Query: 193 IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL----R 248
            RN V+   ++ G       +    +F+ M ++ V+    +  ++L A  E  +L    R
Sbjct: 313 DRNAVTMNGLMVGLARQHQGEEAAKIFKEM-KDLVEINASSYAVLLSAFTEFSNLKEGKR 371

Query: 249 NGKAIHGYAYCCGF-DFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
            G+ +H Y       D    +  AL+++Y +C  A+  AR IF+    KD V W+SII G
Sbjct: 372 KGQEVHAYLIRNALVDVWILIGNALVNLYAKCN-AIDNARSIFQLMPSKDTVSWNSIISG 430

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
              +    EA+  F  MR   + P+  ++++ LSSC    ++  G  +H   +K GL+ D
Sbjct: 431 LDHNERFEEAVACFHTMRRNGMVPSKFSVISTLSSCASLGWIMLGQQIHGEGIKCGLDLD 490

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGE-EALQLFLEMQ 426
           VS+ NAL+ +Y++   +    ++F  M   D VSW + I           +A++ FLEM 
Sbjct: 491 VSVSNALLTLYAETDCMEEYQKVFFLMPEYDQVSWNSFIGALATSEASVLQAIKYFLEMM 550

Query: 427 ESGVEPDAITVLAI 440
           ++G +P+ +T + I
Sbjct: 551 QAGWKPNRVTFINI 564



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 116/399 (29%), Positives = 191/399 (47%), Gaps = 21/399 (5%)

Query: 145 LELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMIS 204
           +E   Q+H L I        VF    L++++ +  + + A ++F++M  +N VSW+ ++S
Sbjct: 55  VEDAHQLH-LQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVS 113

Query: 205 GCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD--LRNGKAIHGYAYCCGF 262
           G   +   D    LFR +   G+ P    +   L AC EL    L+ G  IHG      +
Sbjct: 114 GYAQNGMPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPY 173

Query: 263 DFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFS 322
             D  LS  LM MY  C+ ++  AR +FE  K+K    W+SII  Y + GD   A KLFS
Sbjct: 174 ASDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFS 233

Query: 323 RMRLERIE----PNSVTLLAILS-SCTRQSFLSHGLGV----HCYIMKAGLNFDVSIGNA 373
            M+ E  E    PN  T  ++++ +C   S +  GL +       I K+    D+ +G+A
Sbjct: 234 SMQREATELNCRPNEYTFCSLVTVAC---SLVDCGLTLLEQMLARIEKSSFVKDLYVGSA 290

Query: 374 LMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPD 433
           L++ +++ G I S+  IF +M  R+ V+   L+ G      GEEA ++F EM++  VE +
Sbjct: 291 LVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEMKDL-VEIN 349

Query: 434 AITVLAILSACNHAGLVKEAETLFNNV----MKEKKIALAIEHYACYVDLLGKSGKIEDA 489
           A +   +LSA      +KE +     V    ++   + + I      V+L  K   I++A
Sbjct: 350 ASSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNA 409

Query: 490 CKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
             +   MP K +    +S++S    + R E A    H +
Sbjct: 410 RSIFQLMPSKDTVS-WNSIISGLDHNERFEEAVACFHTM 447



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 98/212 (46%), Gaps = 14/212 (6%)

Query: 341 SSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFV 400
            SCT +   +H L  H  I K GL  DV   N L+N++ + G++ S+ ++F+EM  ++ V
Sbjct: 51  DSCTVED--AHQL--HLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLV 106

Query: 401 SWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG-----LVKEAET 455
           SW+ L+SGY  +G  +EA  LF  +  +G+ P+   + + L AC   G     L  E   
Sbjct: 107 SWSCLVSGYAQNGMPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHG 166

Query: 456 LFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIH 515
           L +       + L+    + Y      S  I+DA +V   + MK S    S +   CR  
Sbjct: 167 LISKSPYASDMVLSNVLMSMYSHC---SASIDDARRVFEEIKMKTSASWNSIISVYCRRG 223

Query: 516 GRLEVAEMLAHQLIEAEPEN--AANYTLLSMV 545
             +   ++ +    EA   N     YT  S+V
Sbjct: 224 DAISAFKLFSSMQREATELNCRPNEYTFCSLV 255


>gi|297816218|ref|XP_002875992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321830|gb|EFH52251.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 721

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 174/530 (32%), Positives = 289/530 (54%), Gaps = 8/530 (1%)

Query: 53  TALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVR 112
            A  S  + +    N ++  YAK SK   A QLFDE P  DT+S+N++I+ +      V 
Sbjct: 64  AAFDSTEEPNVFSYNVIVKAYAKDSKIHIARQLFDENPQPDTVSYNTLISGYADARETVA 123

Query: 113 SLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALL 172
           ++ +F+ M   GF +    L+G+I+ C     ++L +Q+H    V G F+    V+ A +
Sbjct: 124 AMVLFKRMRELGFEVDGFTLSGLIAACCD--RVDLIKQLHCFA-VSGGFDSYSSVNNAFV 180

Query: 173 DLYSKCHHWLIALRVFEQMV-IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTR 231
             YSK      A+ VF  M  +R+EVSW +MI      +     + L++ M  +G K   
Sbjct: 181 TYYSKGGLLREAVSVFYGMDGLRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDM 240

Query: 232 VTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCEC--TEALHPARII 289
            TL  VL A   L  L  G+  HG     GF  + H+ + L+  Y +C   + +  +  +
Sbjct: 241 FTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKV 300

Query: 290 FERTKVKDVVIWSSIIRGYSQSGDLSE-AMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
           F+     D+V+W+++I GYS + + SE A+K F +M+     P+  + + + S+C+  S 
Sbjct: 301 FQEILSPDLVLWNTMISGYSMNEEHSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSS 360

Query: 349 LSHGLGVHCYIMKAGLNFD-VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLIS 407
            S G  +H   +K+ +  + +S+ NAL+++Y K G++  + ++F+ M   + VS+  +I 
Sbjct: 361 PSQGKQIHGLAIKSNIPSNRISVNNALISLYYKSGNLLDARRVFDRMPELNAVSFNCMIK 420

Query: 408 GYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIA 467
           GY  HG+G EAL+L+  M +SG+ P+ IT +AILSAC H G V E +  FN + +  KI 
Sbjct: 421 GYAQHGHGTEALRLYQRMLDSGIAPNNITFVAILSACAHCGKVDEGQKYFNTMKETFKIE 480

Query: 468 LAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQ 527
              EHY+C +DLLG++GK+E+A + +  MP KP +   ++L+ ACR H  + +AE  A +
Sbjct: 481 PEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAAKE 540

Query: 528 LIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           L+  +P  A  Y +L+ + +++G W     V + MR K + K  G S IE
Sbjct: 541 LMVMQPLAATPYVMLANMYADAGKWEEMASVRKSMRGKRIRKKPGCSWIE 590



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 61/146 (41%), Gaps = 33/146 (22%)

Query: 339 ILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCG---------------- 382
           +L S   +   + G  +H   +K+ +     + N  +N+YSKCG                
Sbjct: 15  LLKSVAERDLFT-GKSLHALYVKSIVASSTYLSNHFVNLYSKCGCLSYARAAFDSTEEPN 73

Query: 383 ---------------SITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
                           I  + Q+F+E    D VS+ TLISGY        A+ LF  M+E
Sbjct: 74  VFSYNVIVKAYAKDSKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFKRMRE 133

Query: 428 SGVEPDAITVLAILSA-CNHAGLVKE 452
            G E D  T+  +++A C+   L+K+
Sbjct: 134 LGFEVDGFTLSGLIAACCDRVDLIKQ 159


>gi|125559296|gb|EAZ04832.1| hypothetical protein OsI_27010 [Oryza sativa Indica Group]
          Length = 700

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 165/577 (28%), Positives = 311/577 (53%), Gaps = 5/577 (0%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACA-YAQTHQHFGLQLHCTALKSGS 59
           +V    + + L ++   ++   +  +    P VIKACA      Q   +     A  +  
Sbjct: 124 LVDAGRFSEALEMFWGMVNDGSVAVDGFTYPPVIKACAALGAVAQGRKVWEMVEADIASG 183

Query: 60  DADP--VISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMF 117
           +A P   +  +L+ M+AK    + A  +F+ M  RD  +W ++I     +G ++  +++F
Sbjct: 184 NARPNVFVQCALVDMFAKCGCLDEARNVFESMQVRDLAAWTAMIGGTVHSGNWLEVVDLF 243

Query: 118 REMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSK 177
             M   GF + + + A +IS C + GEL++G  +H   +  G+    ++VS AL+D+Y K
Sbjct: 244 NHMRSEGFGVDSLIAATVISACGRAGELQVGTALHGCAVKSGA-SGDIYVSNALVDMYCK 302

Query: 178 CHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIV 237
           C    +A  +F     ++ VSW+++I G   +  ++  + LF  M   G+ P   TL  +
Sbjct: 303 CGCVEMADCLFWSTNSKDVVSWSSLIVGYSQNGMHNVSVSLFCEMISLGINPNSSTLASI 362

Query: 238 LLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKD 297
           L   + L+ +R+GK IH ++   G +    + +AL+ +Y +    +  A  IF  T  KD
Sbjct: 363 LPCLSVLKLIRSGKEIHCFSIRHGLERSEFVVSALIDLYSK-QGLIRVAETIFWLTLDKD 421

Query: 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHC 357
           + IW+S++ GY+ +G    A      ++   ++P+ VT++++L  C +   L  G  +H 
Sbjct: 422 LAIWNSMVAGYAVNGYSDSAFCALRLLQKVGLKPDHVTVVSVLPLCNQHHMLIQGKELHA 481

Query: 358 YIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEE 417
           Y++K  +N   S+ NAL++MY KCG +  + ++F  M  R+ V++  LIS +G H + ++
Sbjct: 482 YVIKYCINSVCSVNNALLDMYCKCGFLEVAKEVFQLMTERNTVTYNILISSFGKHNHEDQ 541

Query: 418 ALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYV 477
           AL  F  M+  G+ PD +T +A+LS C+HAGL+ +   L+++++ +  I+   EHY+C V
Sbjct: 542 ALSFFDLMKRDGIAPDKVTFVALLSCCSHAGLIDKGLHLYHSMLHDYNISPEKEHYSCIV 601

Query: 478 DLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAA 537
           DL  + GK+++A   +S M  +P   +L  L++ACR+H R+++AE++  ++ E  P +  
Sbjct: 602 DLYSRCGKLDEAWCFMSNMAEEPEIDVLGGLLAACRVHNRMDIAELVGKRIFEQNPNDPG 661

Query: 538 NYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFS 574
            + LLS + +++G W     +  +++ + L K  G S
Sbjct: 662 YHILLSNIYADAGMWSDVTRIRTMIQERNLKKETGNS 698



 Score =  236 bits (601), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 140/418 (33%), Positives = 222/418 (53%), Gaps = 5/418 (1%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           +LH   L  G     V+   L+  YAK      A ++FD MP R++ +WN++I      G
Sbjct: 69  RLHAAVLVGGHGHGTVLVAQLVRAYAKLGDVAHALRVFDGMPRRNSFAWNAVIKGLVDAG 128

Query: 109 FYVRSLEMFREMYLCGFV-LKAELLAGIISLCSQIGELELGRQIHALV---IVDGSFELS 164
            +  +LEMF  M   G V +       +I  C+ +G +  GR++  +V   I  G+   +
Sbjct: 129 RFSEALEMFWGMVNDGSVAVDGFTYPPVIKACAALGAVAQGRKVWEMVEADIASGNARPN 188

Query: 165 VFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR 224
           VFV  AL+D+++KC     A  VFE M +R+  +WTAMI G + S N+   +DLF  M+ 
Sbjct: 189 VFVQCALVDMFAKCGCLDEARNVFESMQVRDLAAWTAMIGGTVHSGNWLEVVDLFNHMRS 248

Query: 225 EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
           EG     +    V+ AC    +L+ G A+HG A   G   D ++S AL+ MYC+C   + 
Sbjct: 249 EGFGVDSLIAATVISACGRAGELQVGTALHGCAVKSGASGDIYVSNALVDMYCKCG-CVE 307

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
            A  +F  T  KDVV WSS+I GYSQ+G  + ++ LF  M    I PNS TL +IL   +
Sbjct: 308 MADCLFWSTNSKDVVSWSSLIVGYSQNGMHNVSVSLFCEMISLGINPNSSTLASILPCLS 367

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
               +  G  +HC+ ++ GL     + +AL+++YSK G I  +  IF     +D   W +
Sbjct: 368 VLKLIRSGKEIHCFSIRHGLERSEFVVSALIDLYSKQGLIRVAETIFWLTLDKDLAIWNS 427

Query: 405 LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462
           +++GY  +GY + A      +Q+ G++PD +TV+++L  CN   ++ + + L   V+K
Sbjct: 428 MVAGYAVNGYSDSAFCALRLLQKVGLKPDHVTVVSVLPLCNQHHMLIQGKELHAYVIK 485


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  291 bits (746), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 173/559 (30%), Positives = 297/559 (53%), Gaps = 5/559 (0%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           SG+  N      V+ AC  ++  +  G ++H   +++G D D   +N+L+ MY+K     
Sbjct: 196 SGVRPNEFGFSCVVNACTGSRDLEA-GRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIH 254

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
            A  +F ++P  D +SWN+ I+    +G    +LE+  +M   G V     L+ I+  C+
Sbjct: 255 MAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACA 314

Query: 141 QIGELELG--RQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
             G       RQIH  +I     +   ++  AL+D+Y+K      A +VFE +  ++ + 
Sbjct: 315 GAGAGAFALGRQIHGFMI-KACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLL 373

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258
           W A+ISGC     +   + LF  M++EG    R TL  VL + A L  + +   +H  A 
Sbjct: 374 WNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAE 433

Query: 259 CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAM 318
             GF  D H+   L+  Y +C   L  A  +FE     +++ ++S+I   SQ     +A+
Sbjct: 434 KIGFLSDSHVVNGLIDSYWKCN-CLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAI 492

Query: 319 KLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMY 378
           KLF  M  + +EP+   L ++L++C   S    G  VH +++K     DV  GNAL+  Y
Sbjct: 493 KLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTY 552

Query: 379 SKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
           +KCGSI  +   F+ +  +  VSW+ +I G   HG+G+ AL +F  M +  + P+ IT+ 
Sbjct: 553 AKCGSIEDADLAFSGLPDKGVVSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLT 612

Query: 439 AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPM 498
           ++L ACNHAGLV EA+  F+++ +   I    EHY+C +DLLG++GK++DA ++V++MP 
Sbjct: 613 SVLCACNHAGLVDEAKGYFSSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPF 672

Query: 499 KPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEV 558
           + +  +  +L++A R+H   E+ ++ A +L   EPE +  + LL+   + +G W    +V
Sbjct: 673 EANAAVWGALLAASRVHRDPELGKLAAEKLFVLEPEKSGTHVLLANTYASAGMWDEVAKV 732

Query: 559 WRVMRAKGLSKSYGFSRIE 577
            ++M+   + K    S +E
Sbjct: 733 RKLMKDSKVKKEPAMSWVE 751



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 148/511 (28%), Positives = 241/511 (47%), Gaps = 44/511 (8%)

Query: 39  YAQTHQHF-GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISW 97
           YA T   F G  +H   LKSG        N L+S Y+K   P SA ++FDE P    +SW
Sbjct: 14  YAATQSLFLGAHIHAHLLKSG--LLHAFRNHLLSFYSKCRLPGSARRVFDETPDPCHVSW 71

Query: 98  NSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIV 157
           +S++  ++ N     +L  FR M   G V   E    I+  C+   +  LG Q+HA+ + 
Sbjct: 72  SSLVTAYSNNALPREALAAFRAMRARG-VRCNEFALPIVLKCAP--DAGLGVQVHAVAVS 128

Query: 158 DGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV-IRNEVSWTAMISGCIDSQNYDTGI 216
            G     +FV+ AL+ +Y        A RVF++    RN VSW  M+S  + +      +
Sbjct: 129 TG-LSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAV 187

Query: 217 DLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMY 276
           +LF  M   GV+P     + V+ AC   RDL  G+ +H      G+D D   + AL+ MY
Sbjct: 188 ELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMY 247

Query: 277 CECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTL 336
            +  + +H A ++F +    DVV W++ I G    G    A++L  +M+   + PN  TL
Sbjct: 248 SKLGD-IHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTL 306

Query: 337 LAILSSCTRQSFLSHGLG--VHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEM 394
            +IL +C      +  LG  +H +++KA  + D  IG AL++MY+K G +  + ++F  +
Sbjct: 307 SSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWI 366

Query: 395 AARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN--------- 445
             +D + W  LISG    G   E+L LF  M++ G + +  T+ A+L +           
Sbjct: 367 PRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTT 426

Query: 446 --HA-----GLVKEAETL--------------FNNVMKEKKIALAIEHYACYVDLLGKSG 484
             HA     G + ++  +              + N + E+  +  I  +   +  L +  
Sbjct: 427 QVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCD 486

Query: 485 KIEDACKVVSTM---PMKPSTRILSSLVSAC 512
             EDA K+   M    ++P   +LSSL++AC
Sbjct: 487 HGEDAIKLFMEMLRKGLEPDPFVLSSLLNAC 517



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 119/422 (28%), Positives = 205/422 (48%), Gaps = 10/422 (2%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGL-QLHCTALKSGSDADPVISNSLISMYAK 75
           ++  SGL  N   L S++KACA A         Q+H   +K+ +D+D  I  +L+ MYAK
Sbjct: 293 QMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAK 352

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
           +   + A ++F+ +P +D + WN++I+  +  G +  SL +F  M   G  +    LA +
Sbjct: 353 YGLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAV 412

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           +   + +  +    Q+HAL    G F     V   L+D Y KC+    A +VFE+    N
Sbjct: 413 LKSTASLEAISDTTQVHALAEKIG-FLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDN 471

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
            +++T+MI+      + +  I LF  M R+G++P    L+ +L ACA L     GK +H 
Sbjct: 472 IIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHA 531

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
           +     F  D     AL++ Y +C  ++  A + F     K VV WS++I G +Q G   
Sbjct: 532 HLIKRKFMTDVFAGNALVYTYAKCG-SIEDADLAFSGLPDKGVVSWSAMIGGLAQHGHGK 590

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA-GLNFDVSIGNAL 374
            A+ +F RM  ERI PN +TL ++L +C     +    G    + +  G++      + +
Sbjct: 591 RALDVFRRMVDERIAPNHITLTSVLCACNHAGLVDEAKGYFSSMKEMFGIDRTEEHYSCM 650

Query: 375 MNMYSKCGSITSSHQIFNEMA-ARDFVSWTTLISGYGFHGYGE----EALQLF-LEMQES 428
           +++  + G +  + ++ N M    +   W  L++    H   E     A +LF LE ++S
Sbjct: 651 IDLLGRAGKLDDAMELVNSMPFEANAAVWGALLAASRVHRDPELGKLAAEKLFVLEPEKS 710

Query: 429 GV 430
           G 
Sbjct: 711 GT 712



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 117/388 (30%), Positives = 190/388 (48%), Gaps = 9/388 (2%)

Query: 130 ELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
           E ++ +++  +    L LG  IHA ++  G   L  F    LL  YSKC     A RVF+
Sbjct: 5   ESISPLLTRYAATQSLFLGAHIHAHLLKSGL--LHAF-RNHLLSFYSKCRLPGSARRVFD 61

Query: 190 QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
           +      VSW+++++   ++      +  FRAM+  GV+     L IVL  CA   D   
Sbjct: 62  ETPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVL-KCAP--DAGL 118

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
           G  +H  A   G   D  ++ AL+ MY          R+  E  + ++ V W+ ++  + 
Sbjct: 119 GVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFV 178

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
           ++   S+A++LF  M    + PN      ++++CT    L  G  VH  +++ G + DV 
Sbjct: 179 KNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVF 238

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
             NAL++MYSK G I  +  +F ++   D VSW   ISG   HG+ + AL+L L+M+ SG
Sbjct: 239 TANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSG 298

Query: 430 VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYA-CYVDLLGKSGKIED 488
           + P+  T+ +IL AC  AG    A     +    K  A + ++     VD+  K G ++D
Sbjct: 299 LVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDD 358

Query: 489 ACKVVSTMPMKPSTRILSSLVSACRIHG 516
           A KV   +P K    + ++L+S C  HG
Sbjct: 359 ARKVFEWIPRK-DLLLWNALISGCS-HG 384


>gi|297604953|ref|NP_001056393.2| Os05g0574800 [Oryza sativa Japonica Group]
 gi|255676596|dbj|BAF18307.2| Os05g0574800 [Oryza sativa Japonica Group]
          Length = 857

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 184/578 (31%), Positives = 311/578 (53%), Gaps = 17/578 (2%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           F E+ L LY + L  +G+  +    P V++ C         G ++H   L+ G   +  +
Sbjct: 177 FLEEALDLYYRMLW-AGMRPDVYTFPCVLRTCG-GIPDWRMGREVHAHVLRFGFGDEVDV 234

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
            N+L++MYAK     +A ++FD M   D ISWN++I    +N      LE+F  M     
Sbjct: 235 LNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTM----- 289

Query: 126 VLKAELLAGIISLCS------QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH 179
            L+ E+   ++++ S       + E+   +++H   +  G F + V    +L+ +Y+   
Sbjct: 290 -LENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRG-FAIDVAFCNSLIQMYTSLG 347

Query: 180 HWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLL 239
               A ++F +M  ++ +SWTAMISG   +   D  ++++  M+   V P  VT+   L 
Sbjct: 348 RMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALA 407

Query: 240 ACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVV 299
           ACA L  L  G  +H  A   GF     ++ AL+ MY + ++ +  A  +F+    KDVV
Sbjct: 408 ACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAK-SKHIDKAIEVFKFMAEKDVV 466

Query: 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
            WSS+I G+  +    EA+  F R  L  ++PNSVT +A LS+C     L  G  +H Y+
Sbjct: 467 SWSSMIAGFCFNHRSFEALYYF-RYMLGHVKPNSVTFIAALSACAATGALRSGKEIHAYV 525

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEAL 419
           ++ G+  +  + NAL+++Y KCG  + +   F+  + +D VSW  ++SG+  HG G+ AL
Sbjct: 526 LRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIAL 585

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479
            LF +M E G  PD +T +A+L AC+ AG+V +   LF+ + ++  I   ++HYAC VDL
Sbjct: 586 SLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIVPNLKHYACMVDL 645

Query: 480 LGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANY 539
           L + GK+ +A  +++ MP+KP   +  +L++ CRIH  +E+ E+ A  ++E EP + A +
Sbjct: 646 LSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGELAAKVILELEPNDVAYH 705

Query: 540 TLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            LL  + +++G W     V + MR KGL +  G S +E
Sbjct: 706 VLLCDLYTDAGKWAQVARVRKTMREKGLEQDNGCSWVE 743



 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 156/539 (28%), Positives = 271/539 (50%), Gaps = 32/539 (5%)

Query: 34  IKACAYAQT-HQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYR 92
           ++ACA A   H  FGL+L                N+++SM  +F +   A+++F +MP R
Sbjct: 116 MRACARADAEHPSFGLRL---------------GNAMLSMLVRFGEIWHAWRVFAKMPER 160

Query: 93  DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIH 152
           D  SWN ++  + + GF   +L+++  M   G          ++  C  I +  +GR++H
Sbjct: 161 DVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVH 220

Query: 153 ALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNY 212
           A V+  G F   V V  AL+ +Y+KC   + A +VF+ M + + +SW AMI+G  ++   
Sbjct: 221 AHVLRFG-FGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFENHEC 279

Query: 213 DTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAAL 272
           + G++LF  M    V+P  +T+T V +A   L ++   K +HG+A   GF  D     +L
Sbjct: 280 EAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSL 339

Query: 273 MHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPN 332
           + MY      +  A  IF R + KD + W+++I GY ++G   +A+++++ M L  + P+
Sbjct: 340 IQMYTSLGR-MGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVSPD 398

Query: 333 SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFN 392
            VT+ + L++C     L  G+ +H      G    V + NAL+ MY+K   I  + ++F 
Sbjct: 399 DVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFK 458

Query: 393 EMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKE 452
            MA +D VSW+++I+G+ F+    EAL  F  M    V+P+++T +A LSAC   G ++ 
Sbjct: 459 FMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYML-GHVKPNSVTFIAALSACAATGALRS 517

Query: 453 AETLFNNVMKEKKIALAIEHYA--CYVDLLGKSGKIEDACKVVSTMPMKPSTR---ILSS 507
            + +   V+   +  +  E Y     +DL  K G+   A    S    K       +LS 
Sbjct: 518 GKEIHAYVL---RCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSG 574

Query: 508 LVSACRIHGRLEVAEMLAHQLIE-AEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAK 565
            V+    HG  ++A  L +Q++E  E  +   +  L   CS +G  +   E++ +M  K
Sbjct: 575 FVA----HGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEK 629



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 3/144 (2%)

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           S+ +R     G L++A+ L          P+    +A+   C  +  +  G+        
Sbjct: 68  SAALRALCSHGQLAQALWLLES---SPEPPDEGAYVALFRLCEWRRAVDAGMRACARADA 124

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
              +F + +GNA+++M  + G I  + ++F +M  RD  SW  ++ GYG  G+ EEAL L
Sbjct: 125 EHPSFGLRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDL 184

Query: 422 FLEMQESGVEPDAITVLAILSACN 445
           +  M  +G+ PD  T   +L  C 
Sbjct: 185 YYRMLWAGMRPDVYTFPCVLRTCG 208


>gi|302761660|ref|XP_002964252.1| hypothetical protein SELMODRAFT_82268 [Selaginella moellendorffii]
 gi|300167981|gb|EFJ34585.1| hypothetical protein SELMODRAFT_82268 [Selaginella moellendorffii]
          Length = 740

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 170/510 (33%), Positives = 279/510 (54%), Gaps = 11/510 (2%)

Query: 46  FGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT 105
            G  +H    + G      + N+LISMY K    E + ++F+ M  +D +SW ++I  + 
Sbjct: 228 LGRSIHLRITRGGDGGGTRLENALISMYGKLENLEESLRVFEVMANKDVVSWTAMITAYA 287

Query: 106 QNGFYVRSLEMFREMYLCGFVLKAELL-AGIISLCSQIGELELGRQIHALVIVDGSFELS 164
           QNG    +LE++R M L   V    +  A ++  CS +G+L  G++I+A V     F++ 
Sbjct: 288 QNGHERLALELYRRMELEKRVRPDRVTYAAVLGACSGLGDLSTGKEIYARV-CSSDFDVD 346

Query: 165 VFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR 224
             + T+L+ LY KCH    A  VF+ +  R+ +++ AM++    + + D  ++L+R M  
Sbjct: 347 AALKTSLVGLYGKCHCLEDAKEVFDSISSRDRLAYNAMLAAYAQNGHPDDALNLYRQMMD 406

Query: 225 -EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEAL 283
            EGV+PT  +  + L+AC  L+DL  GK++HG     G   D  L+  L+  Y E   +L
Sbjct: 407 LEGVEPTDTSFAVALMACTALKDLVTGKSLHGRIQVAGIKLDEVLATTLVGFYGEVG-SL 465

Query: 284 HPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC 343
             A  IFE+  VKDV  +S++I  YSQ+G    AM +++ M  + I+P+ V  +++LS+C
Sbjct: 466 EEAERIFEQMPVKDVFSYSAMIGAYSQNGCEGRAMTIYAEMDQQGIKPDEVAFISVLSAC 525

Query: 344 TRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWT 403
           +          VH  I+ AG   D ++G AL+ MY+K G++  S +IF  M +RD VSWT
Sbjct: 526 SSNLATE----VHTEIVHAGFEADGALGTALVCMYAKSGNLEESRRIFGAMKSRDSVSWT 581

Query: 404 TLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKE 463
            +IS +  HG   EA  LF  M   G++    T+ ++L + + +G V  A   F  +  +
Sbjct: 582 AMISAFARHGC--EAKLLFQGMALDGIDAKGSTLTSMLVSYSQSG-VDAARGFFVAMQGD 638

Query: 464 KKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEM 523
                A EHY+C VDLL +SG++ +A ++V +MP++P      +L+ AC+ HG LE A+ 
Sbjct: 639 FGTCPAAEHYSCLVDLLARSGRVGEAKELVDSMPLEPDFVPWMTLLGACKTHGDLEQAKS 698

Query: 524 LAHQLIEAEPENAANYTLLSMVCSESGNWL 553
            A  ++E +  +   Y +LS +CS  G  L
Sbjct: 699 AARGVLEVDSHSPGAYLVLSTLCSGWGTKL 728



 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 157/526 (29%), Positives = 262/526 (49%), Gaps = 14/526 (2%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           N+     V++AC+ A      G  +  +   S    D V+  +++ MY +    E A Q 
Sbjct: 108 NSVTFLGVLEACS-ALGDLDLGRTVDSSIAGSEWRDDVVVGTAVVGMYGRCRSIEEARQR 166

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL 145
           FD MP ++ +SWN+++  + +NG    +L   REM L G  L       +I + +Q+G L
Sbjct: 167 FDSMPVKNVVSWNALVTSYARNGHPCGALRALREMDLDGTKLNPVTFLLVIEVATQLGSL 226

Query: 146 ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISG 205
            LGR IH L I  G       +  AL+ +Y K  +   +LRVFE M  ++ VSWTAMI+ 
Sbjct: 227 SLGRSIH-LRITRGGDGGGTRLENALISMYGKLENLEESLRVFEVMANKDVVSWTAMITA 285

Query: 206 CIDSQNYDTGIDLFRAMQREG-VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDF 264
              + +    ++L+R M+ E  V+P RVT   VL AC+ L DL  GK I+       FD 
Sbjct: 286 YAQNGHERLALELYRRMELEKRVRPDRVTYAAVLGACSGLGDLSTGKEIYARVCSSDFDV 345

Query: 265 DHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM 324
           D  L  +L+ +Y +C   L  A+ +F+    +D + +++++  Y+Q+G   +A+ L+ +M
Sbjct: 346 DAALKTSLVGLYGKC-HCLEDAKEVFDSISSRDRLAYNAMLAAYAQNGHPDDALNLYRQM 404

Query: 325 -RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS 383
             LE +EP   +    L +CT    L  G  +H  I  AG+  D  +   L+  Y + GS
Sbjct: 405 MDLEGVEPTDTSFAVALMACTALKDLVTGKSLHGRIQVAGIKLDEVLATTLVGFYGEVGS 464

Query: 384 ITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
           +  + +IF +M  +D  S++ +I  Y  +G    A+ ++ EM + G++PD +  +++LSA
Sbjct: 465 LEEAERIFEQMPVKDVFSYSAMIGAYSQNGCEGRAMTIYAEMDQQGIKPDEVAFISVLSA 524

Query: 444 CNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTR 503
           C+ + L  E  T   +   E   AL       Y     KSG +E++ ++   M  + S  
Sbjct: 525 CS-SNLATEVHTEIVHAGFEADGALGTALVCMYA----KSGNLEESRRIFGAMKSRDSVS 579

Query: 504 ILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSES 549
             ++++SA   HG       L  Q +  +  +A   TL SM+ S S
Sbjct: 580 -WTAMISAFARHG---CEAKLLFQGMALDGIDAKGSTLTSMLVSYS 621



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 135/472 (28%), Positives = 242/472 (51%), Gaps = 8/472 (1%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEM 89
           L S I ACA +      G QLH  A+    D + +++NSLI+MY K      A +LF  +
Sbjct: 13  LVSAISACASSGNLAR-GRQLHAAAIARRLDRETLLANSLIAMYGKCHSLAEAERLFHSL 71

Query: 90  PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGR 149
             +D ++WN++I  FT NG    +++++  M   G       L G++  CS +G+L+LGR
Sbjct: 72  ERKDPVTWNTMIGAFTHNGQPRLAVDLYARMG-SGDRNSVTFL-GVLEACSALGDLDLGR 129

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
            + +  I    +   V V TA++ +Y +C     A + F+ M ++N VSW A+++    +
Sbjct: 130 TVDS-SIAGSEWRDDVVVGTAVVGMYGRCRSIEEARQRFDSMPVKNVVSWNALVTSYARN 188

Query: 210 QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS 269
            +    +   R M  +G K   VT  +V+    +L  L  G++IH      G      L 
Sbjct: 189 GHPCGALRALREMDLDGTKLNPVTFLLVIEVATQLGSLSLGRSIHLRITRGGDGGGTRLE 248

Query: 270 AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE-R 328
            AL+ MY +  E L  +  +FE    KDVV W+++I  Y+Q+G    A++L+ RM LE R
Sbjct: 249 NALISMYGKL-ENLEESLRVFEVMANKDVVSWTAMITAYAQNGHERLALELYRRMELEKR 307

Query: 329 IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSH 388
           + P+ VT  A+L +C+    LS G  ++  +  +  + D ++  +L+ +Y KC  +  + 
Sbjct: 308 VRPDRVTYAAVLGACSGLGDLSTGKEIYARVCSSDFDVDAALKTSLVGLYGKCHCLEDAK 367

Query: 389 QIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE-SGVEPDAITVLAILSACNHA 447
           ++F+ +++RD +++  +++ Y  +G+ ++AL L+ +M +  GVEP   +    L AC   
Sbjct: 368 EVFDSISSRDRLAYNAMLAAYAQNGHPDDALNLYRQMMDLEGVEPTDTSFAVALMACTAL 427

Query: 448 GLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
             +   ++L   + +   I L        V   G+ G +E+A ++   MP+K
Sbjct: 428 KDLVTGKSLHGRI-QVAGIKLDEVLATTLVGFYGEVGSLEEAERIFEQMPVK 478



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 117/409 (28%), Positives = 194/409 (47%), Gaps = 24/409 (5%)

Query: 132 LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM 191
           L   IS C+  G L  GRQ+HA  I     +    ++ +L+ +Y KCH    A R+F  +
Sbjct: 13  LVSAISACASSGNLARGRQLHAAAIAR-RLDRETLLANSLIAMYGKCHSLAEAERLFHSL 71

Query: 192 VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGK 251
             ++ V+W  MI     +      +DL+  M   G + + VT   VL AC+ L DL  G+
Sbjct: 72  ERKDPVTWNTMIGAFTHNGQPRLAVDLYARMG-SGDRNS-VTFLGVLEACSALGDLDLGR 129

Query: 252 AIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQS 311
            +        +  D  +  A++ MY  C  ++  AR  F+   VK+VV W++++  Y+++
Sbjct: 130 TVDSSIAGSEWRDDVVVGTAVVGMYGRC-RSIEEARQRFDSMPVKNVVSWNALVTSYARN 188

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
           G    A++    M L+  + N VT L ++   T+   LS G  +H  I + G      + 
Sbjct: 189 GHPCGALRALREMDLDGTKLNPVTFLLVIEVATQLGSLSLGRSIHLRITRGGDGGGTRLE 248

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ-ESGV 430
           NAL++MY K  ++  S ++F  MA +D VSWT +I+ Y  +G+   AL+L+  M+ E  V
Sbjct: 249 NALISMYGKLENLEESLRVFEVMANKDVVSWTAMITAYAQNGHERLALELYRRMELEKRV 308

Query: 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMKEK-KIALAIEHYACYVDLLGKSGKIEDA 489
            PD +T  A+L AC+  G +   + ++  V      +  A++     V L GK   +EDA
Sbjct: 309 RPDRVTYAAVLGACSGLGDLSTGKEIYARVCSSDFDVDAALK--TSLVGLYGKCHCLEDA 366

Query: 490 CKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAAN 538
            +V  ++  +                 RL    MLA       P++A N
Sbjct: 367 KEVFDSISSRD----------------RLAYNAMLAAYAQNGHPDDALN 399



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 90/176 (51%), Gaps = 3/176 (1%)

Query: 324 MRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS 383
           M   RI P+  TL++ +S+C     L+ G  +H   +   L+ +  + N+L+ MY KC S
Sbjct: 1   MEERRILPHRTTLVSAISACASSGNLARGRQLHAAAIARRLDRETLLANSLIAMYGKCHS 60

Query: 384 ITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
           +  + ++F+ +  +D V+W T+I  +  +G    A+ L+  M     + +++T L +L A
Sbjct: 61  LAEAERLFHSLERKDPVTWNTMIGAFTHNGQPRLAVDLYARMGSG--DRNSVTFLGVLEA 118

Query: 444 CNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           C+  G +    T+ +++   +     +   A  V + G+   IE+A +   +MP+K
Sbjct: 119 CSALGDLDLGRTVDSSIAGSEWRDDVVVGTAV-VGMYGRCRSIEEARQRFDSMPVK 173


>gi|356543252|ref|XP_003540076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 934

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 174/544 (31%), Positives = 288/544 (52%), Gaps = 11/544 (2%)

Query: 27  TAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLF 86
           +A+LP     C  AQ  + +G  LH   +KSG +++  + NSL+SMY++  K E A  +F
Sbjct: 265 SALLP----VCGSAQNLR-WGRGLHGMVVKSGLESNVCVCNSLLSMYSQAGKSEDAEFVF 319

Query: 87  DEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELE 146
            +M  RD ISWNS++     NG Y R+LE+  EM               +S C  +  L+
Sbjct: 320 HKMRERDLISWNSMMASHVDNGNYPRALELLIEMLQTRKATNYVTFTTALSACYNLETLK 379

Query: 147 LGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGC 206
           +   +HA VI+ G    ++ +  AL+ +Y K      A RV + M  R+EV+W A+I G 
Sbjct: 380 I---VHAFVILLG-LHHNLIIGNALVTMYGKFGSMAAAQRVCKIMPDRDEVTWNALIGGH 435

Query: 207 IDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN-GKAIHGYAYCCGFDFD 265
            D++  +  I+ F  ++ EGV    +T+  +L A     DL + G  IH +    GF+ +
Sbjct: 436 ADNKEPNAAIEAFNLLREEGVPVNYITIVNLLSAFLSPDDLLDHGMPIHAHIVVAGFELE 495

Query: 266 HHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR 325
             + ++L+ MY +C + L+ +  IF+    K+   W++I+   +  G   EA+KL  +MR
Sbjct: 496 TFVQSSLITMYAQCGD-LNTSNYIFDVLANKNSSTWNAILSANAHYGPGEEALKLIIKMR 554

Query: 326 LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSIT 385
            + I  +  +     +     + L  G  +H  I+K G   +  + NA M+MY KCG I 
Sbjct: 555 NDGIHLDQFSFSVAHAIIGNLTLLDEGQQLHSLIIKHGFESNDYVLNATMDMYGKCGEID 614

Query: 386 SSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
              +I  +  +R   SW  LIS    HG+ ++A + F EM + G+ PD +T +++LSAC+
Sbjct: 615 DVFRILPQPRSRSQRSWNILISALARHGFFQQAREAFHEMLDLGLRPDHVTFVSLLSACS 674

Query: 446 HAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRIL 505
           H GLV E    F+++  +  +   IEH  C +DLLG++GK+ +A   ++ MP+ P+  + 
Sbjct: 675 HGGLVDEGLAYFSSMSTKFGVPTGIEHCVCIIDLLGRAGKLTEAENFINKMPVPPTDLVW 734

Query: 506 SSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAK 565
            SL++AC+IHG LE+A   A +L E +  + + Y L S VC+ +  W   E V + M + 
Sbjct: 735 RSLLAACKIHGNLELARKAADRLFELDSSDDSAYVLYSNVCASTRRWRDVENVRKQMESH 794

Query: 566 GLSK 569
            + K
Sbjct: 795 NIKK 798



 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 154/548 (28%), Positives = 282/548 (51%), Gaps = 17/548 (3%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           ++ + +Y++ L   G+Y N   + +VI++C      +  G Q+  + +KSG D    ++N
Sbjct: 142 KEVMSVYRR-LRRDGVYCNENAMATVIRSCG-VLVDKMLGYQVLGSVIKSGLDTTVSVAN 199

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           SLISM+      E A  +FD+M  RDTISWNSII     NG   +SLE F +M       
Sbjct: 200 SLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNGHCEKSLEYFSQMRYTHAKT 259

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
               ++ ++ +C     L  GR +H +V+  G  E +V V  +LL +YS+      A  V
Sbjct: 260 DYITISALLPVCGSAQNLRWGRGLHGMVVKSG-LESNVCVCNSLLSMYSQAGKSEDAEFV 318

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F +M  R+ +SW +M++  +D+ NY   ++L   M +       VT T  L AC  L  L
Sbjct: 319 FHKMRERDLISWNSMMASHVDNGNYPRALELLIEMLQTRKATNYVTFTTALSACYNLETL 378

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
              K +H +    G   +  +  AL+ MY +   ++  A+ + +    +D V W+++I G
Sbjct: 379 ---KIVHAFVILLGLHHNLIIGNALVTMYGKFG-SMAAAQRVCKIMPDRDEVTWNALIGG 434

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSS-CTRQSFLSHGLGVHCYIMKAGLNF 366
           ++ + + + A++ F+ +R E +  N +T++ +LS+  +    L HG+ +H +I+ AG   
Sbjct: 435 HADNKEPNAAIEAFNLLREEGVPVNYITIVNLLSAFLSPDDLLDHGMPIHAHIVVAGFEL 494

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           +  + ++L+ MY++CG + +S+ IF+ +A ++  +W  ++S    +G GEEAL+L ++M+
Sbjct: 495 ETFVQSSLITMYAQCGDLNTSNYIFDVLANKNSSTWNAILSANAHYGPGEEALKLIIKMR 554

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYA--CYVDLLGKSG 484
             G+  D  +     +   +  L+ E + L + ++K          Y     +D+ GK G
Sbjct: 555 NDGIHLDQFSFSVAHAIIGNLTLLDEGQQLHSLIIKH---GFESNDYVLNATMDMYGKCG 611

Query: 485 KIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE--AEPENAANYTLL 542
           +I+D  +++   P   S R  + L+SA   HG  + A    H++++    P++    +LL
Sbjct: 612 EIDDVFRIL-PQPRSRSQRSWNILISALARHGFFQQAREAFHEMLDLGLRPDHVTFVSLL 670

Query: 543 SMVCSESG 550
           S  CS  G
Sbjct: 671 S-ACSHGG 677



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 123/432 (28%), Positives = 222/432 (51%), Gaps = 17/432 (3%)

Query: 72  MYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAEL 131
           MY+KF   E A  +FD+MP R+  SWN++++ F + G+Y ++++ F  M   G    + +
Sbjct: 1   MYSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYV 60

Query: 132 LAGIISLCSQIGELELGR-QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR-VFE 189
            A +++ C + G +  G  Q+HA VI  G     VFV T+LL  Y     W+  +  VF+
Sbjct: 61  AASLVTACDRSGCMTEGAFQVHAHVIKCG-LACDVFVGTSLLHFYGT-FGWVAEVDMVFK 118

Query: 190 QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
           ++   N VSWT+++ G   +      + ++R ++R+GV      +  V+ +C  L D   
Sbjct: 119 EIEEPNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSCGVLVDKML 178

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
           G  + G     G D    ++ +L+ M+  C +++  A  +F+  K +D + W+SII    
Sbjct: 179 GYQVLGSVIKSGLDTTVSVANSLISMFGNC-DSIEEASCVFDDMKERDTISWNSIITASV 237

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
            +G   ++++ FS+MR    + + +T+ A+L  C     L  G G+H  ++K+GL  +V 
Sbjct: 238 HNGHCEKSLEYFSQMRYTHAKTDYITISALLPVCGSAQNLRWGRGLHGMVVKSGLESNVC 297

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
           + N+L++MYS+ G    +  +F++M  RD +SW ++++ +  +G    AL+L +EM ++ 
Sbjct: 298 VCNSLLSMYSQAGKSEDAEFVFHKMRERDLISWNSMMASHVDNGNYPRALELLIEMLQTR 357

Query: 430 VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY----ACYVDLLGKSGK 485
              + +T    LSAC         ETL   ++    I L + H        V + GK G 
Sbjct: 358 KATNYVTFTTALSAC------YNLETL--KIVHAFVILLGLHHNLIIGNALVTMYGKFGS 409

Query: 486 IEDACKVVSTMP 497
           +  A +V   MP
Sbjct: 410 MAAAQRVCKIMP 421



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 109/438 (24%), Positives = 215/438 (49%), Gaps = 6/438 (1%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           +Y++ +  +   L   G+  ++ +  S++ AC  +        Q+H   +K G   D  +
Sbjct: 38  WYQKAMQFFCHMLE-HGVRPSSYVAASLVTACDRSGCMTEGAFQVHAHVIKCGLACDVFV 96

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
             SL+  Y  F        +F E+   + +SW S++  +  NG     + ++R +   G 
Sbjct: 97  GTSLLHFYGTFGWVAEVDMVFKEIEEPNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGV 156

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
                 +A +I  C  + +  LG Q+   VI  G  + +V V+ +L+ ++  C     A 
Sbjct: 157 YCNENAMATVIRSCGVLVDKMLGYQVLGSVIKSG-LDTTVSVANSLISMFGNCDSIEEAS 215

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
            VF+ M  R+ +SW ++I+  + + + +  ++ F  M+    K   +T++ +L  C   +
Sbjct: 216 CVFDDMKERDTISWNSIITASVHNGHCEKSLEYFSQMRYTHAKTDYITISALLPVCGSAQ 275

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
           +LR G+ +HG     G + +  +  +L+ MY +  ++   A  +F + + +D++ W+S++
Sbjct: 276 NLRWGRGLHGMVVKSGLESNVCVCNSLLSMYSQAGKS-EDAEFVFHKMRERDLISWNSMM 334

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
             +  +G+   A++L   M   R   N VT    LS+C     L     VH +++  GL+
Sbjct: 335 ASHVDNGNYPRALELLIEMLQTRKATNYVTFTTALSACYNLETLKI---VHAFVILLGLH 391

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            ++ IGNAL+ MY K GS+ ++ ++   M  RD V+W  LI G+  +     A++ F  +
Sbjct: 392 HNLIIGNALVTMYGKFGSMAAAQRVCKIMPDRDEVTWNALIGGHADNKEPNAAIEAFNLL 451

Query: 426 QESGVEPDAITVLAILSA 443
           +E GV  + IT++ +LSA
Sbjct: 452 REEGVPVNYITIVNLLSA 469


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 165/529 (31%), Positives = 279/529 (52%), Gaps = 4/529 (0%)

Query: 51  HCTALKSGSDADPVISNSLISMYAKFSK-PESAYQLFDEMPYR-DTISWNSIINCFTQNG 108
           HC  L+     D  + + ++     FS   +    +F + P   +T  +N++I       
Sbjct: 24  HCRLLRLNLHHDNDLLSIILRSTINFSNNAQYPILVFHKTPTNSNTFLYNTMIRGMVSKD 83

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
            +  ++ ++  M+    V  +   + ++  C+++    LG  IH+LV   G F+  VFV 
Sbjct: 84  RFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFHLGVMIHSLVFKTG-FDCDVFVK 142

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
           T ++  YSKC     A +VF+ MV++N VSWT MI GCI+   +   +DLFR +   G++
Sbjct: 143 TNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREAVDLFRGLLESGLR 202

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
           P    +  VL ACA L DL +G+ I      CG   +  ++ +L+ MY +C  ++  AR 
Sbjct: 203 PDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRNVFVATSLVDMYTKCG-SMEEARF 261

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
           +F+    KD+V WS++I+GY+ +G   EA++LF  MR   + P+   ++  LSSC     
Sbjct: 262 VFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGALSSCASLGA 321

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
           L  G      +       +  +G +L++ Y+KCGS+  +  ++  M  +D V +  +ISG
Sbjct: 322 LELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDRVVFNAVISG 381

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468
              +G    A  +F +M + G+ P+  T + +L  C HAGLV +    FN++  +  +  
Sbjct: 382 LAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRHYFNSMSHDFSVTP 441

Query: 469 AIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
            IEHY C VDLL ++G +++A  ++  MPMK +  +  SL+  CR+H   ++AE +  QL
Sbjct: 442 TIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLHRETQLAEHVLKQL 501

Query: 529 IEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           IE EP N+ +Y LLS + S S  W  AE++   +  KG+ K  G+S +E
Sbjct: 502 IELEPWNSGHYVLLSNIYSASRRWDEAEKIRSTVNEKGMQKLPGYSWVE 550



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 110/434 (25%), Positives = 209/434 (48%), Gaps = 15/434 (3%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           MVSK  +   +HLY   +H + +  ++     V+KACA      H G+ +H    K+G D
Sbjct: 79  MVSKDRFNNAVHLYAS-MHKAAIVPDSFTFSFVLKACARLNLF-HLGVMIHSLVFKTGFD 136

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
            D  +  +++  Y+K      A+++FD+M  ++ +SW  +I    + G +  ++++FR +
Sbjct: 137 CDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREAVDLFRGL 196

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
              G      ++  ++  C+++G+LE GR I    + +     +VFV+T+L+D+Y+KC  
Sbjct: 197 LESGLRPDGFVIVRVLRACARLGDLESGRWIDR-CMRECGLSRNVFVATSLVDMYTKCGS 255

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
              A  VF+ MV ++ V W+AMI G   +      I+LF  M++  V+P    +   L +
Sbjct: 256 MEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGALSS 315

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
           CA L  L  G    G      F  +  L  +L+  Y +C  ++  A  +++  K KD V+
Sbjct: 316 CASLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKCG-SMEEALGVYKMMKEKDRVV 374

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           ++++I G +  G +  A  +F +M    I PN  T + +L  CT    +  G     Y  
Sbjct: 375 FNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDG---RHYFN 431

Query: 361 KAGLNFDVSIG----NALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFH--- 412
               +F V+        ++++ ++ G +  +H +   M  + + + W +L+ G   H   
Sbjct: 432 SMSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLHRET 491

Query: 413 GYGEEALQLFLEMQ 426
              E  L+  +E++
Sbjct: 492 QLAEHVLKQLIELE 505


>gi|224058449|ref|XP_002299515.1| predicted protein [Populus trichocarpa]
 gi|222846773|gb|EEE84320.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 166/512 (32%), Positives = 276/512 (53%), Gaps = 5/512 (0%)

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
           SN+++SMYA+  +   A ++FDE+   D +SW   I   +       ++E+FR +   G 
Sbjct: 12  SNAVMSMYARCGREVDAIKVFDEIAEPDVVSWTERIGTASDGH---EAVELFRIVLSLGL 68

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
            +    L  ++S+   +  L  G+QI AL    G F++ V VS AL+ +Y KC     A 
Sbjct: 69  DVNEYTLINVLSMIGGVKFLNAGKQIQALCHKTGYFQV-VSVSNALVSMYGKCGQICDAC 127

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
           RVF  M+IR+ VSW ++IS C ++   +  +++F  M+   ++PT  TL  +L A +   
Sbjct: 128 RVFYNMIIRDSVSWNSLISACSENGFVNQALEVFYQMRELSLQPTIHTLASILEAVSNSN 187

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
           + +    IH     CGF FD  + + L+  Y  C       R+  E  KV ++V  +++I
Sbjct: 188 NTKQVIQIHSLVVKCGFMFDVSMISCLITAYGRCNSMDESKRVFAEIDKV-NLVHLNTMI 246

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
             + ++G  ++A+ L+  +     + +S T   IL +C+  + +  G  VH  ++K G +
Sbjct: 247 TTFVRAGYYTDALALYQTIWSLHRKVDSRTFSIILKACSAITDMQLGRAVHSLVLKTGFD 306

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            D  + ++++++Y KCGSI  + + F   +     +W  ++ GY  HG  +E   LF +M
Sbjct: 307 QDSFVESSVIDIYCKCGSIGQAEKAFRSSSMNSLAAWNAMMMGYAHHGCYQEVFDLFNKM 366

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
            + G+EPD IT L +LS+C H GLVKEA    +++ +   I   +EHYAC +DLLG+ G 
Sbjct: 367 SQFGIEPDEITYLGVLSSCCHGGLVKEARHYLDSMFELHGIIPHLEHYACMIDLLGRVGL 426

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV 545
           +EDA K +  MP++P   I   L+SAC IHG +E+  + A +L+E  PEN + Y LLS +
Sbjct: 427 LEDAKKTIDHMPIQPDVHIWQILLSACNIHGHVELGRVAARKLLEIHPENESAYILLSNL 486

Query: 546 CSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +  G W     + + M+ K L K  G S I+
Sbjct: 487 YASVGMWNAVGRLRKEMKEKNLRKEPGSSWIQ 518



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/378 (26%), Positives = 184/378 (48%), Gaps = 16/378 (4%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G Q+     K+G      +SN+L+SMY K  +   A ++F  M  RD++SWNS+I+  ++
Sbjct: 91  GKQIQALCHKTGYFQVVSVSNALVSMYGKCGQICDACRVFYNMIIRDSVSWNSLISACSE 150

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           NGF  ++LE+F +M           LA I+   S     +   QIH+LV+  G F   V 
Sbjct: 151 NGFVNQALEVFYQMRELSLQPTIHTLASILEAVSNSNNTKQVIQIHSLVVKCG-FMFDVS 209

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           + + L+  Y +C+    + RVF ++   N V    MI+  + +  Y   + L++ +    
Sbjct: 210 MISCLITAYGRCNSMDESKRVFAEIDKVNLVHLNTMITTFVRAGYYTDALALYQTIWSLH 269

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
            K    T +I+L AC+ + D++ G+A+H      GFD D  + ++++ +YC+C  ++  A
Sbjct: 270 RKVDSRTFSIILKACSAITDMQLGRAVHSLVLKTGFDQDSFVESSVIDIYCKCG-SIGQA 328

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR- 345
              F  + +  +  W++++ GY+  G   E   LF++M    IEP+ +T L +LSSC   
Sbjct: 329 EKAFRSSSMNSLAAWNAMMMGYAHHGCYQEVFDLFNKMSQFGIEPDEITYLGVLSSCCHG 388

Query: 346 ------QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR-D 398
                 + +L     +H      G+   +     ++++  + G +  + +  + M  + D
Sbjct: 389 GLVKEARHYLDSMFELH------GIIPHLEHYACMIDLLGRVGLLEDAKKTIDHMPIQPD 442

Query: 399 FVSWTTLISGYGFHGYGE 416
              W  L+S    HG+ E
Sbjct: 443 VHIWQILLSACNIHGHVE 460



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 146/282 (51%), Gaps = 4/282 (1%)

Query: 164 SVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQ 223
           S+  S A++ +Y++C   + A++VF+++   + VSWT  I    D       ++LFR + 
Sbjct: 8   SMHFSNAVMSMYARCGREVDAIKVFDEIAEPDVVSWTERIGTASDGHE---AVELFRIVL 64

Query: 224 REGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEAL 283
             G+     TL  VL     ++ L  GK I    +  G+     +S AL+ MY +C +  
Sbjct: 65  SLGLDVNEYTLINVLSMIGGVKFLNAGKQIQALCHKTGYFQVVSVSNALVSMYGKCGQIC 124

Query: 284 HPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC 343
              R +F    ++D V W+S+I   S++G +++A+++F +MR   ++P   TL +IL + 
Sbjct: 125 DACR-VFYNMIIRDSVSWNSLISACSENGFVNQALEVFYQMRELSLQPTIHTLASILEAV 183

Query: 344 TRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWT 403
           +  +     + +H  ++K G  FDVS+ + L+  Y +C S+  S ++F E+   + V   
Sbjct: 184 SNSNNTKQVIQIHSLVVKCGFMFDVSMISCLITAYGRCNSMDESKRVFAEIDKVNLVHLN 243

Query: 404 TLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
           T+I+ +   GY  +AL L+  +     + D+ T   IL AC+
Sbjct: 244 TMITTFVRAGYYTDALALYQTIWSLHRKVDSRTFSIILKACS 285



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 95/232 (40%), Gaps = 21/232 (9%)

Query: 2   VSKHFYEQTLHLYKQ--ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGS 59
           V   +Y   L LY+    LH      ++     ++KAC+ A T    G  +H   LK+G 
Sbjct: 250 VRAGYYTDALALYQTIWSLHRK---VDSRTFSIILKACS-AITDMQLGRAVHSLVLKTGF 305

Query: 60  DADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFRE 119
           D D  + +S+I +Y K      A + F         +WN+++  +  +G Y    ++F +
Sbjct: 306 DQDSFVESSVIDIYCKCGSIGQAEKAFRSSSMNSLAAWNAMMMGYAHHGCYQEVFDLFNK 365

Query: 120 MYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS-----TALLDL 174
           M   G         G++S C   G ++  R       +D  FEL   +        ++DL
Sbjct: 366 MSQFGIEPDEITYLGVLSSCCHGGLVKEARH-----YLDSMFELHGIIPHLEHYACMIDL 420

Query: 175 YSKCHHWLIALRVFEQMVIRNEVS-WTAMISGCIDSQNYDTGIDLFRAMQRE 225
             +      A +  + M I+ +V  W  ++S C    N    ++L R   R+
Sbjct: 421 LGRVGLLEDAKKTIDHMPIQPDVHIWQILLSAC----NIHGHVELGRVAARK 468


>gi|255565124|ref|XP_002523554.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223537116|gb|EEF38749.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 611

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 181/563 (32%), Positives = 287/563 (50%), Gaps = 46/563 (8%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           S +  +  + P V++AC      +  G+ +H   +  G +++  + NSLI MY K     
Sbjct: 90  SDVLPDNYVFPKVLRACTQLLWFEG-GIWIHKDVIVCGCESNLQVCNSLIDMYVKCGNAR 148

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
           SA  +F+EM  RD  SWNS+I+ +  NG    ++E+   M L GF               
Sbjct: 149 SARLVFEEMEERDLFSWNSMISGYVSNGLADLAVELLNCMRLDGF--------------- 193

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
                                E  V     L+D Y +   +  A  V +Q+   N +SWT
Sbjct: 194 ---------------------EPDVVTWNTLMDAYCQMGRFDEAWEVLKQIEQPNIISWT 232

Query: 201 AMISGCIDSQNYDTGIDLFRAMQ-REGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
            +IS       +D  + +F+ M  RE V P    L  VL++C  +  LR+GK IHGY   
Sbjct: 233 TLISSYSKIGEHDMSLRVFQDMIIREVVSPDLDCLCSVLVSCRHIGALRSGKEIHGYGTK 292

Query: 260 CGFD--FDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
              +  F     AAL+ MY +C   +  A  +FE     D+V W+++I G+ +     +A
Sbjct: 293 METNTVFYSSAGAALLTMYAKCGR-IQDAINVFELMDKSDIVTWNAMILGFVELDLGKQA 351

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA-GLNFDVSIGNALMN 376
           ++ F  M+   I+ +  T+  IL  C     L +G  +H Y+ K+  L+  V++ NA+++
Sbjct: 352 IECFREMQRMDIKNDQTTISTILPVCD----LQYGNPIHAYVRKSITLSSVVTVWNAVIH 407

Query: 377 MYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAIT 436
           MY KCG + S++ IF  M  +D VSW T+I G+G HG+G+ AL+L  EM  SG+ P++ T
Sbjct: 408 MYCKCGCVRSAYTIFCSMPNKDVVSWNTMIGGFGMHGHGQAALKLLKEMILSGIFPNSTT 467

Query: 437 VLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
             ++LSAC+H+GLV E   LF ++ ++  I   +EHY+C VD+L ++G+  DA   +  M
Sbjct: 468 FTSVLSACSHSGLVDEGFRLFRSMTEDYSITPRMEHYSCIVDMLARAGQFADAVTFIHKM 527

Query: 497 PMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAE 556
           P++P   I  +L++ACR +  L+   + A QLI  EP+ A +Y  LS + + +G W  A 
Sbjct: 528 PLEPDKSIWGALLAACRAYQNLDFGRLAAEQLIRMEPKCAGHYVTLSNIYARAGRWDDAG 587

Query: 557 EVWRVMRAKGLSKSYGFSRIENE 579
            V + +  KGL K  G S IE  
Sbjct: 588 RVRKEIEGKGLVKPSGQSLIETR 610



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 135/524 (25%), Positives = 238/524 (45%), Gaps = 49/524 (9%)

Query: 45  HFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCF 104
           H G Q+H     SG   DP +   LI MYA      SA +LFD+MP  +  +W +I   +
Sbjct: 12  HAGKQIHQQITVSGWGKDPFMLTKLIQMYADCDHLFSAQRLFDKMPQPNVYAWTAIFGFY 71

Query: 105 TQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELS 164
            ++G Y + ++ +  M     +    +   ++  C+Q+   E G  IH  VIV G  E +
Sbjct: 72  LRHGMYDKCVQNYGFMKYSDVLPDNYVFPKVLRACTQLLWFEGGIWIHKDVIVCGC-ESN 130

Query: 165 VFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR 224
           + V  +L+D+Y KC +   A  VFE+M  R+  SW +MISG + +   D  ++L   M+ 
Sbjct: 131 LQVCNSLIDMYVKCGNARSARLVFEEMEERDLFSWNSMISGYVSNGLADLAVELLNCMRL 190

Query: 225 EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
           +G +P  VT                                      LM  YC+      
Sbjct: 191 DGFEPDVVTWN-----------------------------------TLMDAYCQMGR-FD 214

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRL-ERIEPNSVTLLAILSSC 343
            A  + ++ +  +++ W+++I  YS+ G+   ++++F  M + E + P+   L ++L SC
Sbjct: 215 EAWEVLKQIEQPNIISWTTLISSYSKIGEHDMSLRVFQDMIIREVVSPDLDCLCSVLVSC 274

Query: 344 TRQSFLSHGLGVHCYIMKAGLN--FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS 401
                L  G  +H Y  K   N  F  S G AL+ MY+KCG I  +  +F  M   D V+
Sbjct: 275 RHIGALRSGKEIHGYGTKMETNTVFYSSAGAALLTMYAKCGRIQDAINVFELMDKSDIVT 334

Query: 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVM 461
           W  +I G+     G++A++ F EMQ   ++ D  T+  IL  C+    ++    +   V 
Sbjct: 335 WNAMILGFVELDLGKQAIECFREMQRMDIKNDQTTISTILPVCD----LQYGNPIHAYVR 390

Query: 462 KEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA 521
           K   ++  +  +   + +  K G +  A  +  +MP K      ++++    +HG  + A
Sbjct: 391 KSITLSSVVTVWNAVIHMYCKCGCVRSAYTIFCSMPNKDVVS-WNTMIGGFGMHGHGQAA 449

Query: 522 -EMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRA 564
            ++L   ++     N+  +T +   CS SG     +E +R+ R+
Sbjct: 450 LKLLKEMILSGIFPNSTTFTSVLSACSHSGL---VDEGFRLFRS 490



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 163/364 (44%), Gaps = 39/364 (10%)

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           ++ LCS +  L  G+QIH  + V G +    F+ T L+ +Y+ C H   A R+F++M   
Sbjct: 1   MLQLCSNLKSLHAGKQIHQQITVSG-WGKDPFMLTKLIQMYADCDHLFSAQRLFDKMPQP 59

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
           N  +WTA+    +    YD  +  +  M+   V P       VL AC +L     G  IH
Sbjct: 60  NVYAWTAIFGFYLRHGMYDKCVQNYGFMKYSDVLPDNYVFPKVLRACTQLLWFEGGIWIH 119

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
                CG + +  +  +L+ MY +C  A   AR++FE  + +D+  W+S+I GY  +G  
Sbjct: 120 KDVIVCGCESNLQVCNSLIDMYVKCGNA-RSARLVFEEMEERDLFSWNSMISGYVSNGLA 178

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
             A++L + MRL+  EP+ VT                                    N L
Sbjct: 179 DLAVELLNCMRLDGFEPDVVTW-----------------------------------NTL 203

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM-QESGVEPD 433
           M+ Y + G    + ++  ++   + +SWTTLIS Y   G  + +L++F +M     V PD
Sbjct: 204 MDAYCQMGRFDEAWEVLKQIEQPNIISWTTLISSYSKIGEHDMSLRVFQDMIIREVVSPD 263

Query: 434 AITVLAILSACNHAGLVKEAETLFNNVMK-EKKIALAIEHYACYVDLLGKSGKIEDACKV 492
              + ++L +C H G ++  + +     K E          A  + +  K G+I+DA  V
Sbjct: 264 LDCLCSVLVSCRHIGALRSGKEIHGYGTKMETNTVFYSSAGAALLTMYAKCGRIQDAINV 323

Query: 493 VSTM 496
              M
Sbjct: 324 FELM 327



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 140/287 (48%), Gaps = 10/287 (3%)

Query: 237 VLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK 296
           +L  C+ L+ L  GK IH      G+  D  +   L+ MY +C + L  A+ +F++    
Sbjct: 1   MLQLCSNLKSLHAGKQIHQQITVSGWGKDPFMLTKLIQMYADC-DHLFSAQRLFDKMPQP 59

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVH 356
           +V  W++I   Y + G   + ++ +  M+   + P++     +L +CT+  +   G+ +H
Sbjct: 60  NVYAWTAIFGFYLRHGMYDKCVQNYGFMKYSDVLPDNYVFPKVLRACTQLLWFEGGIWIH 119

Query: 357 CYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGE 416
             ++  G   ++ + N+L++MY KCG+  S+  +F EM  RD  SW ++ISGY  +G  +
Sbjct: 120 KDVIVCGCESNLQVCNSLIDMYVKCGNARSARLVFEEMEERDLFSWNSMISGYVSNGLAD 179

Query: 417 EALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACY 476
            A++L   M+  G EPD +T   ++ A    G   EA  +   + +   I+     +   
Sbjct: 180 LAVELLNCMRLDGFEPDVVTWNTLMDAYCQMGRFDEAWEVLKQIEQPNIIS-----WTTL 234

Query: 477 VDLLGKSGKIEDACKVVSTMPMK----PSTRILSSLVSACRIHGRLE 519
           +    K G+ + + +V   M ++    P    L S++ +CR  G L 
Sbjct: 235 ISSYSKIGEHDMSLRVFQDMIIREVVSPDLDCLCSVLVSCRHIGALR 281


>gi|147859209|emb|CAN83551.1| hypothetical protein VITISV_001173 [Vitis vinifera]
          Length = 728

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 177/581 (30%), Positives = 293/581 (50%), Gaps = 65/581 (11%)

Query: 60  DADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFRE 119
           + + V  ++LIS   K+ + E +   F+  P+++ +SW + I+ F +NG    +L++F  
Sbjct: 115 ERNEVSWSALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFR 174

Query: 120 MYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS----------- 168
           +   G          ++  C ++G+  LG  I  LV+  G FE  + VS           
Sbjct: 175 LLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLVVKAG-FEHYLSVSNSLITLSLRMG 233

Query: 169 --------------------TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCID 208
                               TA+LD Y +      A R+F++M  RNE+SW+AMI+    
Sbjct: 234 EIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQ 293

Query: 209 SQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHL 268
           S   +  + LF  M +EG KP        L A A LR L  G  IHG+    G D D  +
Sbjct: 294 SGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFI 353

Query: 269 SAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSG---------------- 312
            ++L+ +YC+C +     R++F+    K+VV W+S++ GYS +G                
Sbjct: 354 GSSLIDLYCKCGKP-DDGRLVFDLILEKNVVCWNSMVGGYSINGRLEEXEELFELIPEKN 412

Query: 313 DLS---------------EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHC 357
           D S               + +++F+ + +    PN  T  ++L +C   + L  G+ VH 
Sbjct: 413 DXSWGTIJAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHG 472

Query: 358 YIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEE 417
            I+K G+ +D+ +G AL +MY+KCG I SS Q+F  M  ++ +SWT +I G    G+  E
Sbjct: 473 KIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVE 532

Query: 418 ALQLFLEMQE-SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACY 476
           +L LF EM+  S V P+ + +L++L AC+H GLV +    FN++ K   I    +HY C 
Sbjct: 533 SLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGKHYTCV 592

Query: 477 VDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENA 536
           VDLL +SG++ +A + + T+P +P     ++L+S C+ +   ++AE  A +L +    N+
Sbjct: 593 VDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDEKIAERTAKKLWQLAENNS 652

Query: 537 ANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           A Y LLS + + +G W+    + ++MR KGL KS G S +E
Sbjct: 653 AGYVLLSNIYASAGRWIDVSNIRKLMREKGLKKSGGCSWVE 693



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 133/522 (25%), Positives = 215/522 (41%), Gaps = 118/522 (22%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G  LH   +K+G  +   I+  L+ +Y    K     Q+  E    D +  N +I+ + Q
Sbjct: 40  GNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQIVKEFDGSDLVVSNCMISAYVQ 99

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
            G  V++  +F EM     V  + L++G++                      G  E S++
Sbjct: 100 WGNLVQARLLFDEMPERNEVSWSALISGLMKY--------------------GRVEESMW 139

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
                                FE+   +N VSWTA ISG + +      + LF  +   G
Sbjct: 140 Y--------------------FERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESG 179

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS----------------- 269
           V+P  VT T V+ AC EL D   G +I G     G  F+H+LS                 
Sbjct: 180 VRPNDVTFTSVVRACGELGDFGLGMSILGLVVKAG--FEHYLSVSNSLITLSLRMGEIDL 237

Query: 270 ----------------AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGD 313
                            A++  Y E T  L  AR IF+    ++ + WS++I  YSQSG 
Sbjct: 238 ARRVFDRMEKRDVVSWTAILDAYVE-TGDLREARRIFDEMPERNEISWSAMIARYSQSGY 296

Query: 314 LSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNA 373
             EA+KLFS+M  E  +PN       LS+      LS G+ +H ++ K G++ DV IG++
Sbjct: 297 AEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSS 356

Query: 374 LMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHG-------------------Y 414
           L+++Y KCG       +F+ +  ++ V W +++ GY  +G                   +
Sbjct: 357 LIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEEXEELFELIPEKNDXSW 416

Query: 415 G------------EEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462
           G            E+ L++F  +  SG  P+  T  ++L AC     + +   +   ++K
Sbjct: 417 GTIJAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIK 476

Query: 463 EKKIALAIEHYACYV-----DLLGKSGKIEDACKVVSTMPMK 499
                L I+ Y  +V     D+  K G I  + +V   MP K
Sbjct: 477 -----LGIQ-YDIFVGTALTDMYAKCGDIGSSKQVFERMPEK 512



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 108/458 (23%), Positives = 203/458 (44%), Gaps = 72/458 (15%)

Query: 18  LHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTAL--KSGSDADPVISNSLISMYAK 75
           L  SG+  N     SV++AC        FGL +    L  K+G +    +SNSLI++  +
Sbjct: 175 LLESGVRPNDVTFTSVVRACG---ELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLR 231

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINC-------------------------------F 104
             + + A ++FD M  RD +SW +I++                                +
Sbjct: 232 MGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARY 291

Query: 105 TQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELS 164
           +Q+G+   +L++F +M   GF       A  +S  + +  L  G  IH  V   G  +  
Sbjct: 292 SQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKIG-IDKD 350

Query: 165 VFVSTALLDLYSKCHH----WLIALRVFEQMVI--------------------------- 193
           VF+ ++L+DLY KC       L+   + E+ V+                           
Sbjct: 351 VFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEEXEELFELIPE 410

Query: 194 RNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAI 253
           +N+ SW  +J+G ++++  +  +++F  +   G  P + T + VL ACA +  L  G  +
Sbjct: 411 KNDXSWGTIJAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNV 470

Query: 254 HGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGD 313
           HG     G  +D  +  AL  MY +C + +  ++ +FER   K+ + W+ +I+G ++SG 
Sbjct: 471 HGKIIKLGIQYDIFVGTALTDMYAKCGD-IGSSKQVFERMPEKNEISWTVMIQGLAESGF 529

Query: 314 LSEAMKLFSRM-RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA-GLNFDVSIG 371
             E++ LF  M R   + PN + LL++L +C+    +  GL     + K  G+       
Sbjct: 530 AVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGKHY 589

Query: 372 NALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISG 408
             ++++ S+ G +  + +    +  + +  +W  L+SG
Sbjct: 590 TCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSG 627



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 119/269 (44%), Gaps = 35/269 (13%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           + E+ L L+ + +   G   N +     + A A  +     G+ +H    K G D D  I
Sbjct: 296 YAEEALKLFSKMVQ-EGFKPNISCFACTLSALASLRALSA-GINIHGHVTKIGIDKDVFI 353

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYV-------------- 111
            +SLI +Y K  KP+    +FD +  ++ + WNS++  ++ NG                 
Sbjct: 354 GSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEEXEELFELIPEKND 413

Query: 112 -----------------RSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHAL 154
                            + LE+F  + + G        + ++  C+ I  L+ G  +H  
Sbjct: 414 XSWGTIJAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGK 473

Query: 155 VIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDT 214
           +I  G  +  +FV TAL D+Y+KC     + +VFE+M  +NE+SWT MI G  +S     
Sbjct: 474 IIKLG-IQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVE 532

Query: 215 GIDLFRAMQREG-VKPTRVTLTIVLLACA 242
            + LF  M+R   V P  + L  VL AC+
Sbjct: 533 SLILFEEMERTSEVAPNELMLLSVLFACS 561



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 94/208 (45%), Gaps = 18/208 (8%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E+ L ++   L  SG   N +   SV+ ACA   +    G+ +H   +K G   D  +  
Sbjct: 430 EKVLEVFNT-LLVSGQTPNKSTFSSVLCACASIASLDK-GMNVHGKIIKLGIQYDIFVGT 487

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +L  MYAK     S+ Q+F+ MP ++ ISW  +I    ++GF V SL +F EM     V 
Sbjct: 488 ALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVA 547

Query: 128 KAEL-LAGIISLCSQIGELELG-------RQIHALVIVDGSFELSVFVSTALLDLYSKCH 179
             EL L  ++  CS  G ++ G        +++ +      +       T ++DL S+  
Sbjct: 548 PNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGKHY-------TCVVDLLSRSG 600

Query: 180 HWLIALRVFEQMVIRNEV-SWTAMISGC 206
               A      +  + E  +W A++SGC
Sbjct: 601 RLYEAEEFIRTIPFQPEANAWAALLSGC 628


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 178/582 (30%), Positives = 307/582 (52%), Gaps = 28/582 (4%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHF-GLQLHCTALKSGSDADPVISN 67
           Q+L L   ++  +GL++    L  +++ C  +    HF GL    +  ++  + + +I N
Sbjct: 47  QSLRLIHAQMIKTGLHNTNYALSKLLELCVISP---HFDGLPYAISVFETIQEPNLLIWN 103

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT---------QNGFYVRSLEMFR 118
           ++   +A  S P SA +L+  M     IS   + N +T         ++  +    ++  
Sbjct: 104 TMFRGHALSSDPVSALKLYVCM-----ISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHG 158

Query: 119 EMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKC 178
            +   G+ L   +   +IS+  Q G LE  R++      D S    V   TAL+  Y+  
Sbjct: 159 HVLKLGYDLDLFVHTSLISVYVQNGRLEDARKV-----FDRSPHRDVVSYTALIKGYASR 213

Query: 179 HHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVL 238
            +   A ++F+++ +++ VSW AMISG  ++ NY   ++LF+ M +  ++P   T+  V+
Sbjct: 214 GYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVV 273

Query: 239 LACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDV 298
            ACA+   +  G+ +H +    GF  +  +  +LM +Y +C E L  A  +FE    KDV
Sbjct: 274 SACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGE-LETACGLFEGLLYKDV 332

Query: 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCY 358
           + W+++I GY+      EA+ LF  M      PN VT+L+IL +C     +  G  +H Y
Sbjct: 333 ISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVY 392

Query: 359 I---MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYG 415
           I   +K+  N   S+  +L++MY+KCG I ++HQ+FN +  +   SW  +I G+  HG  
Sbjct: 393 IDKRLKSATNAS-SLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRA 451

Query: 416 EEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC 475
           + A  +F  M++ G+EPD IT + +LSAC+ +G++     +F  + ++ KI   +EHY C
Sbjct: 452 DAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGC 511

Query: 476 YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPEN 535
            +DLLG SG  ++A ++++ M M+P   I  SL+ AC+I G +E+ E  A  LI+ EPEN
Sbjct: 512 MIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSLLKACKIRGNVELGESFAQNLIKIEPEN 571

Query: 536 AANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
              Y LLS + + +G W    ++  ++  KG+ K  G S IE
Sbjct: 572 PGCYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIE 613


>gi|359488823|ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245824 [Vitis vinifera]
          Length = 1984

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 176/574 (30%), Positives = 291/574 (50%), Gaps = 65/574 (11%)

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           ++LIS   K+ + E +   F+  P+++ +SW + I+ F +NG    +L++F  +   G  
Sbjct: 122 SALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVR 181

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS------------------ 168
                   ++  C ++G+  LG  I  LV+  G FE  + VS                  
Sbjct: 182 PNDVTFTSVVRACGELGDFGLGMSILGLVVKAG-FEHYLSVSNSLITLSLRMGEIDLARR 240

Query: 169 -------------TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTG 215
                        TA+LD Y +      A R+F++M  RNE+SW+AMI+    S   +  
Sbjct: 241 VFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEA 300

Query: 216 IDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHM 275
           + LF  M +EG KP        L A A LR L  G  IHG+    G D D  + ++L+ +
Sbjct: 301 LKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDL 360

Query: 276 YCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSG----------------DLS---- 315
           YC+C +     R++F+    K+VV W+S++ GYS +G                D+S    
Sbjct: 361 YCKCGKP-DDGRLVFDLILEKNVVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTI 419

Query: 316 -----------EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
                      + +++F+ + +    PN  T  ++L +C   + L  G+ VH  I+K G+
Sbjct: 420 IAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGI 479

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
            +D+ +G AL +MY+KCG I SS Q+F  M  ++ +SWT +I G    G+  E+L LF E
Sbjct: 480 QYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEE 539

Query: 425 MQE-SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS 483
           M+  S V P+ + +L++L AC+H GLV +    FN++ K   I    +HY C VDLL +S
Sbjct: 540 MERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRS 599

Query: 484 GKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLS 543
           G++ +A + + T+P +P     ++L+S C+ +   ++AE  A +L +    N+A Y LLS
Sbjct: 600 GRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDEKIAERTAKKLWQLAENNSAGYVLLS 659

Query: 544 MVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            + + +G W+    + ++MR KGL KS G S +E
Sbjct: 660 NIYASAGRWIDVSNIRKLMREKGLKKSGGCSWVE 693



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 133/522 (25%), Positives = 216/522 (41%), Gaps = 118/522 (22%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G  LH   +K+G  +   I+  L+ +Y    K     Q+  E    D +  N +I+ + Q
Sbjct: 40  GNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQIVKEFDGSDLVVSNCMISAYVQ 99

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
            G  V++  +F EM     V  + L++G+         ++ GR   ++            
Sbjct: 100 WGNLVQARLLFDEMPERNEVSWSALISGL---------MKYGRVEESM------------ 138

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
                         W      FE+   +N VSWTA ISG + +      + LF  +   G
Sbjct: 139 --------------WY-----FERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESG 179

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS----------------- 269
           V+P  VT T V+ AC EL D   G +I G     G  F+H+LS                 
Sbjct: 180 VRPNDVTFTSVVRACGELGDFGLGMSILGLVVKAG--FEHYLSVSNSLITLSLRMGEIDL 237

Query: 270 ----------------AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGD 313
                            A++  Y E T  L  AR IF+    ++ + WS++I  YSQSG 
Sbjct: 238 ARRVFDRMEKRDVVSWTAILDAYVE-TGDLREARRIFDEMPERNEISWSAMIARYSQSGY 296

Query: 314 LSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNA 373
             EA+KLFS+M  E  +PN       LS+      LS G+ +H ++ K G++ DV IG++
Sbjct: 297 AEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSS 356

Query: 374 LMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHG-------------------Y 414
           L+++Y KCG       +F+ +  ++ V W +++ GY  +G                   +
Sbjct: 357 LIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEETEELFELIPEKNDVSW 416

Query: 415 G------------EEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462
           G            E+ L++F  +  SG  P+  T  ++L AC     + +   +   ++K
Sbjct: 417 GTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIK 476

Query: 463 EKKIALAIEHYACYV-----DLLGKSGKIEDACKVVSTMPMK 499
                L I+ Y  +V     D+  K G I  + +V   MP K
Sbjct: 477 -----LGIQ-YDIFVGTALTDMYAKCGDIGSSKQVFERMPEK 512



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 109/455 (23%), Positives = 203/455 (44%), Gaps = 72/455 (15%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTAL--KSGSDADPVISNSLISMYAKFSK 78
           SG+  N     SV++AC        FGL +    L  K+G +    +SNSLI++  +  +
Sbjct: 178 SGVRPNDVTFTSVVRACGELG---DFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGE 234

Query: 79  PESAYQLFDEMPYRDTISWNSIINC-------------------------------FTQN 107
            + A ++FD M  RD +SW +I++                                ++Q+
Sbjct: 235 IDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQS 294

Query: 108 GFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFV 167
           G+   +L++F +M   GF       A  +S  + +  L  G  IH  V   G  +  VF+
Sbjct: 295 GYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKIG-IDKDVFI 353

Query: 168 STALLDLYSKCHH----WLIALRVFEQMVI---------------------------RNE 196
            ++L+DLY KC       L+   + E+ V+                           +N+
Sbjct: 354 GSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEETEELFELIPEKND 413

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           VSW  +I+G ++++  +  +++F  +   G  P + T + VL ACA +  L  G  +HG 
Sbjct: 414 VSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGK 473

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
               G  +D  +  AL  MY +C + +  ++ +FER   K+ + W+ +I+G ++SG   E
Sbjct: 474 IIKLGIQYDIFVGTALTDMYAKCGD-IGSSKQVFERMPEKNEISWTVMIQGLAESGFAVE 532

Query: 317 AMKLFSRM-RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA-GLNFDVSIGNAL 374
           ++ LF  M R   + PN + LL++L +C+    +  GL     + K  G+         +
Sbjct: 533 SLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGKHYTCV 592

Query: 375 MNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISG 408
           +++ S+ G +  + +    +  + +  +W  L+SG
Sbjct: 593 VDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSG 627



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 119/269 (44%), Gaps = 35/269 (13%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           + E+ L L+ + +   G   N +     + A A  +     G+ +H    K G D D  I
Sbjct: 296 YAEEALKLFSKMVQ-EGFKPNISCFACTLSALASLRALSA-GINIHGHVTKIGIDKDVFI 353

Query: 66  SNSLISMYAKFSKPESAYQLFD-------------------------------EMPYRDT 94
            +SLI +Y K  KP+    +FD                                +P ++ 
Sbjct: 354 GSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEETEELFELIPEKND 413

Query: 95  ISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHAL 154
           +SW +II  + +N    + LE+F  + + G        + ++  C+ I  L+ G  +H  
Sbjct: 414 VSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGK 473

Query: 155 VIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDT 214
           +I  G  +  +FV TAL D+Y+KC     + +VFE+M  +NE+SWT MI G  +S     
Sbjct: 474 IIKLG-IQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVE 532

Query: 215 GIDLFRAMQREG-VKPTRVTLTIVLLACA 242
            + LF  M+R   V P  + L  VL AC+
Sbjct: 533 SLILFEEMERTSEVAPNELMLLSVLFACS 561



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 88/195 (45%), Gaps = 17/195 (8%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           SG   N +   SV+ ACA   +    G+ +H   +K G   D  +  +L  MYAK     
Sbjct: 442 SGQTPNKSTFSSVLCACASIASLDK-GMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIG 500

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAEL-LAGIISLC 139
           S+ Q+F+ MP ++ ISW  +I    ++GF V SL +F EM     V   EL L  ++  C
Sbjct: 501 SSKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFAC 560

Query: 140 SQIGELELG-------RQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV 192
           S  G ++ G        +++ +      +       T ++DL S+      A      + 
Sbjct: 561 SHCGLVDKGLWYFNSMEKVYGIKPKGKHY-------TCVVDLLSRSGRLYEAEEFIRTIP 613

Query: 193 IRNEV-SWTAMISGC 206
            + E  +W A++SGC
Sbjct: 614 FQPEANAWAALLSGC 628


>gi|79475105|ref|NP_193221.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122236284|sp|Q0WSH6.1|PP312_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14850; AltName: Full=Protein LOVASTATIN INSENSITIVE
           1
 gi|110735893|dbj|BAE99922.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658109|gb|AEE83509.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 684

 Score =  291 bits (745), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 168/542 (30%), Positives = 280/542 (51%), Gaps = 5/542 (0%)

Query: 38  AYAQTHQHFGLQLHCTALKS-GSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTIS 96
           A + +    G  +H   +K+  S   P ++N LI+MY+K   PESA  +    P R+ +S
Sbjct: 16  AISASSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPARNVVS 75

Query: 97  WNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVI 156
           W S+I+   QNG +  +L  F EM   G V             + +     G+QIHAL +
Sbjct: 76  WTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQIHALAV 135

Query: 157 VDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGI 216
             G   L VFV  +  D+Y K      A ++F+++  RN  +W A IS  +        I
Sbjct: 136 KCGRI-LDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAI 194

Query: 217 DLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMY 276
           + F   +R    P  +T    L AC++   L  G  +HG     GFD D  +   L+  Y
Sbjct: 195 EAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFY 254

Query: 277 CECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTL 336
            +C + +  + IIF     K+ V W S++  Y Q+ +  +A  L+ R R + +E +   +
Sbjct: 255 GKCKQ-IRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMI 313

Query: 337 LAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA 396
            ++LS+C   + L  G  +H + +KA +   + +G+AL++MY KCG I  S Q F+EM  
Sbjct: 314 SSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPE 373

Query: 397 RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV--EPDAITVLAILSACNHAGLVKEAE 454
           ++ V+  +LI GY   G  + AL LF EM   G    P+ +T +++LSAC+ AG V+   
Sbjct: 374 KNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGM 433

Query: 455 TLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRI 514
            +F+++     I    EHY+C VD+LG++G +E A + +  MP++P+  +  +L +ACR+
Sbjct: 434 KIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNACRM 493

Query: 515 HGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFS 574
           HG+ ++  + A  L + +P+++ N+ LLS   + +G W  A  V   ++  G+ K  G+S
Sbjct: 494 HGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYS 553

Query: 575 RI 576
            I
Sbjct: 554 WI 555



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 129/445 (28%), Positives = 218/445 (48%), Gaps = 12/445 (2%)

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
           +L A+ L  ++        + LGR +HA ++         F++  L+++YSK  H   A 
Sbjct: 3   LLSADALGLLLKNAISASSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESAR 62

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
            V      RN VSWT++ISG   + ++ T +  F  M+REGV P   T      A A LR
Sbjct: 63  LVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLR 122

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
               GK IH  A  CG   D  +  +   MYC+ T     AR +F+    +++  W++ I
Sbjct: 123 LPVTGKQIHALAVKCGRILDVFVGCSAFDMYCK-TRLRDDARKLFDEIPERNLETWNAFI 181

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
                 G   EA++ F   R     PNS+T  A L++C+    L+ G+ +H  ++++G +
Sbjct: 182 SNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFD 241

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            DVS+ N L++ Y KC  I SS  IF EM  ++ VSW +L++ Y  +   E+A  L+L  
Sbjct: 242 TDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRS 301

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLLGK 482
           ++  VE     + ++LSAC     ++   ++  + +K   E+ I +     +  VD+ GK
Sbjct: 302 RKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVG----SALVDMYGK 357

Query: 483 SGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANY-TL 541
            G IED+ +    MP K +    +SL+      G++++A  L  ++         NY T 
Sbjct: 358 CGCIEDSEQAFDEMPEK-NLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTF 416

Query: 542 LSMV--CSESGNWLGAEEVWRVMRA 564
           +S++  CS +G      +++  MR+
Sbjct: 417 VSLLSACSRAGAVENGMKIFDSMRS 441


>gi|302822426|ref|XP_002992871.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
 gi|300139319|gb|EFJ06062.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
          Length = 716

 Score =  291 bits (745), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 168/570 (29%), Positives = 301/570 (52%), Gaps = 9/570 (1%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           Q L L+  E+   G+ ++  I+ S++ AC   Q  +  G +LH   + +G   D  +  +
Sbjct: 13  QALELWG-EMEERGIVADKFIVTSLVAACTKLQALEE-GRRLHEHLIITGFRTDIPLETA 70

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           L+ MYAK    + A ++F+ M  +D  +W+SII  + + G    ++ ++R M   G    
Sbjct: 71  LLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLYRRMIAEGVEPN 130

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
               A  +  C+ +  L  GR IH  ++     +  V    +LL++Y KC   + A +VF
Sbjct: 131 VVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVL-QDSLLNMYLKCDEMVEARKVF 189

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR-EGVKPTRVTLTIVLLACAELRDL 247
           E M  RN  S+TAMIS  + +  +   ++LF  M + E ++P   T   +L A   L +L
Sbjct: 190 EGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNL 249

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
             G+ +H +    GFD +  +  AL+ MY +C   +  AR +F+    ++V+ W+S+I  
Sbjct: 250 EKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVE-ARKVFDSMTARNVISWTSMIAA 308

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
           Y+Q G+  EA+ LF RM    +EP+ V+  + L++C     L  G  +H  +++A L   
Sbjct: 309 YAQHGNPQEALNLFKRMD---VEPSGVSFSSALNACALLGALDEGREIHHRVVEANLA-S 364

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
             +  +L++MY++CGS+  + ++FN M  RD  S   +I+ +  HG  ++AL+++ +M++
Sbjct: 365 PQMETSLLSMYARCGSLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRKMEQ 424

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487
            G+  D IT +++L AC+H  LV +      +++ +  +   +EHY C VD+LG+SG++ 
Sbjct: 425 EGIPADGITFVSVLVACSHTSLVADCRDFLQSLVMDHGVVPLVEHYLCMVDVLGRSGRLG 484

Query: 488 DACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCS 547
           DA ++V TMP +       +L+S C+ HG L+  E  A ++ E  P     Y  LS + +
Sbjct: 485 DAEELVETMPYQADAVAWMTLLSGCKRHGDLDRGERAARKVFELAPAETLPYVFLSNMYA 544

Query: 548 ESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +  +  A  V + M  +G+++    S IE
Sbjct: 545 AAKRFDDARRVRKEMEERGVTRPVAVSYIE 574



 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 138/452 (30%), Positives = 247/452 (54%), Gaps = 10/452 (2%)

Query: 100 IINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDG 159
           +I    + G  +++LE++ EM   G V    ++  +++ C+++  LE GR++H  +I+ G
Sbjct: 1   MIAACVREGRPLQALELWGEMEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITG 60

Query: 160 SFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLF 219
            F   + + TALL +Y+KC     A RVFE M I++  +W+++I+    +   +  + L+
Sbjct: 61  -FRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLY 119

Query: 220 RAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCEC 279
           R M  EGV+P  VT    L  CA +  L +G+AIH          D  L  +L++MY +C
Sbjct: 120 RRMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKC 179

Query: 280 TEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM-RLERIEPNSVTLLA 338
            E +  AR +FE  K ++V  ++++I  Y Q+G+ +EA++LFSRM ++E IEPN+ T   
Sbjct: 180 DEMVE-ARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFAT 238

Query: 339 ILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARD 398
           IL +      L  G  VH ++   G + +V + NAL+ MY KCGS   + ++F+ M AR+
Sbjct: 239 ILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARN 298

Query: 399 FVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFN 458
            +SWT++I+ Y  HG  +EAL LF  M    VEP  ++  + L+AC   G + E   + +
Sbjct: 299 VISWTSMIAAYAQHGNPQEALNLFKRMD---VEPSGVSFSSALNACALLGALDEGREIHH 355

Query: 459 NVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRL 518
            V++    +  +E     + +  + G ++DA +V + M  + +    +++++A   HGR 
Sbjct: 356 RVVEANLASPQME--TSLLSMYARCGSLDDARRVFNRMKTRDAFSC-NAMIAAFTQHGRK 412

Query: 519 EVAEMLAHQL-IEAEPENAANYTLLSMVCSES 549
           + A  +  ++  E  P +   +  + + CS +
Sbjct: 413 KQALRIYRKMEQEGIPADGITFVSVLVACSHT 444


>gi|242046440|ref|XP_002461091.1| hypothetical protein SORBIDRAFT_02g040530 [Sorghum bicolor]
 gi|241924468|gb|EER97612.1| hypothetical protein SORBIDRAFT_02g040530 [Sorghum bicolor]
          Length = 695

 Score =  291 bits (745), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 172/579 (29%), Positives = 303/579 (52%), Gaps = 5/579 (0%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACA-YAQTHQHFGLQLHCTA--LKS 57
           +V    + + L  Y   +    + ++    P V+KACA      Q   +Q +  A   + 
Sbjct: 119 LVDAGRFSEALQWYWDMVGDGSVVADRFTYPPVLKACAALGVVEQGRKVQENVEADIARG 178

Query: 58  GSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMF 117
            +  +  +  +L+ M+AK      A  +F+ M  RD  +W ++I      G ++  + + 
Sbjct: 179 IAKCNVFVQCALVDMFAKCGCLGEARNVFESMEVRDLAAWTAMIGGTVHGGDWLEVMTLL 238

Query: 118 REMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSK 177
           + M   GF   + +LA +I  C ++ EL  G  +H  V+  G   +   V  AL+D+Y K
Sbjct: 239 KRMKSEGFRPDSMILATVIPACGKVKELRTGTALHGCVVKCG-VGVDTCVLNALVDMYCK 297

Query: 178 CHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIV 237
           C     A  +F  +  ++ +SW+ +I+G   ++ Y   + LF  M   GVKP   TL  +
Sbjct: 298 CARLDFAASLFWSIDHKDVISWSTIIAGHSQNRRYHVSVSLFSEMVASGVKPNSTTLASI 357

Query: 238 LLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKD 297
           L + +ELR  R GK IH ++   G +    L++AL+  Y     ++  A I+FE T   D
Sbjct: 358 LPSLSELRLFRYGKEIHCFSLRNGLEHSEFLASALIDFYSR-QGSIKEAEIVFEFTPKND 416

Query: 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHC 357
           +V+ +S+I GY  + D   A++L   +  E + P+ VT++++L  C + S L  G  +H 
Sbjct: 417 LVVSNSMIGGYVVNEDSESALRLLRALLKEGLRPDRVTVVSVLPLCNQHSRLLQGKELHA 476

Query: 358 YIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEE 417
           Y ++  ++   S+ NAL +MY KCG +  + +IF  M  R+ V++ TLIS  G HG+ E+
Sbjct: 477 YAIRHNISSCCSVSNALTDMYCKCGCLELAFEIFLLMTERNTVTYNTLISSLGKHGHAEQ 536

Query: 418 ALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYV 477
           A  LF  M+  GV PD +T +A+LS C+H GL+ +    +++++++  I+   EHY+C V
Sbjct: 537 AFFLFDLMKRDGVSPDKVTFVALLSCCSHEGLIDKGLCFYDSMLRDYNISPDKEHYSCIV 596

Query: 478 DLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAA 537
           DL  +SG+++ A   ++ +   P   +L  L+SACR H R+++AE++A ++ E  P +  
Sbjct: 597 DLYSRSGRLDAAWSFIANLQEVPEIDVLGCLLSACREHNRMDIAELVAERIFEQNPNDPG 656

Query: 538 NYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
            + LLS + + +G W     +  ++  + L K  G S I
Sbjct: 657 YHILLSNIYASAGMWSEVTRIRTMIEERSLKKRTGNSLI 695



 Score =  218 bits (555), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 151/510 (29%), Positives = 254/510 (49%), Gaps = 12/510 (2%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPE--SAYQLFDEMPYRDTISWNSIINCFTQ 106
           +LH   L  G     V++  L+  YA+        A ++FD M  R++ +WN++I     
Sbjct: 62  RLHAALLVRGYRTSTVLAAQLVRAYARLRDGGLGHAVRVFDGMLTRNSFAWNAVIKGLVD 121

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELL-AGIISLCSQIGELELGRQIHALVIVD---GSFE 162
            G +  +L+ + +M   G V+        ++  C+ +G +E GR++   V  D   G  +
Sbjct: 122 AGRFSEALQWYWDMVGDGSVVADRFTYPPVLKACAALGVVEQGRKVQENVEADIARGIAK 181

Query: 163 LSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM 222
            +VFV  AL+D+++KC     A  VFE M +R+  +WTAMI G +   ++   + L + M
Sbjct: 182 CNVFVQCALVDMFAKCGCLGEARNVFESMEVRDLAAWTAMIGGTVHGGDWLEVMTLLKRM 241

Query: 223 QREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEA 282
           + EG +P  + L  V+ AC ++++LR G A+HG    CG   D  +  AL+ MYC+C   
Sbjct: 242 KSEGFRPDSMILATVIPACGKVKELRTGTALHGCVVKCGVGVDTCVLNALVDMYCKCAR- 300

Query: 283 LHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSS 342
           L  A  +F     KDV+ WS+II G+SQ+     ++ LFS M    ++PNS TL +IL S
Sbjct: 301 LDFAASLFWSIDHKDVISWSTIIAGHSQNRRYHVSVSLFSEMVASGVKPNSTTLASILPS 360

Query: 343 CTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSW 402
            +      +G  +HC+ ++ GL     + +AL++ YS+ GSI  +  +F      D V  
Sbjct: 361 LSELRLFRYGKEIHCFSLRNGLEHSEFLASALIDFYSRQGSIKEAEIVFEFTPKNDLVVS 420

Query: 403 TTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462
            ++I GY  +   E AL+L   + + G+ PD +TV+++L  CN    + + + L    ++
Sbjct: 421 NSMIGGYVVNEDSESALRLLRALLKEGLRPDRVTVVSVLPLCNQHSRLLQGKELHAYAIR 480

Query: 463 EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAE 522
              I+          D+  K G +E A ++   M  + +T   ++L+S+   HG  E A 
Sbjct: 481 H-NISSCCSVSNALTDMYCKCGCLELAFEIFLLMTER-NTVTYNTLISSLGKHGHAEQAF 538

Query: 523 MLAHQLIE--AEPENAANYTLLSMVCSESG 550
            L   +      P+      LLS  CS  G
Sbjct: 539 FLFDLMKRDGVSPDKVTFVALLS-CCSHEG 567



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 104/366 (28%), Positives = 185/366 (50%), Gaps = 30/366 (8%)

Query: 149 RQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI--ALRVFEQMVIRNEVSWTAMISGC 206
           R++HA ++V G +  S  ++  L+  Y++     +  A+RVF+ M+ RN  +W A+I G 
Sbjct: 61  RRLHAALLVRG-YRTSTVLAAQLVRAYARLRDGGLGHAVRVFDGMLTRNSFAWNAVIKGL 119

Query: 207 IDSQNYDTGIDLFRAMQREG-VKPTRVTLTIVLLACAELRDLRNGKAIH---------GY 256
           +D+  +   +  +  M  +G V   R T   VL ACA L  +  G+ +          G 
Sbjct: 120 VDAGRFSEALQWYWDMVGDGSVVADRFTYPPVLKACAALGVVEQGRKVQENVEADIARGI 179

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
           A C  F     +  AL+ M+ +C   L  AR +FE  +V+D+  W+++I G    GD  E
Sbjct: 180 AKCNVF-----VQCALVDMFAKCG-CLGEARNVFESMEVRDLAAWTAMIGGTVHGGDWLE 233

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
            M L  RM+ E   P+S+ L  ++ +C +   L  G  +H  ++K G+  D  + NAL++
Sbjct: 234 VMTLLKRMKSEGFRPDSMILATVIPACGKVKELRTGTALHGCVVKCGVGVDTCVLNALVD 293

Query: 377 MYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAIT 436
           MY KC  +  +  +F  +  +D +SW+T+I+G+  +     ++ LF EM  SGV+P++ T
Sbjct: 294 MYCKCARLDFAASLFWSIDHKDVISWSTIIAGHSQNRRYHVSVSLFSEMVASGVKPNSTT 353

Query: 437 VLAILSACNHAGLVKEAE-----TLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACK 491
           + +IL + +   L +  +     +L N +   + +A A+      +D   + G I++A  
Sbjct: 354 LASILPSLSELRLFRYGKEIHCFSLRNGLEHSEFLASAL------IDFYSRQGSIKEAEI 407

Query: 492 VVSTMP 497
           V    P
Sbjct: 408 VFEFTP 413


>gi|125550837|gb|EAY96546.1| hypothetical protein OsI_18451 [Oryza sativa Indica Group]
          Length = 591

 Score =  291 bits (745), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 174/516 (33%), Positives = 268/516 (51%), Gaps = 9/516 (1%)

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC-GF 125
           N+L+SMYA+  + E A ++FDEM  RD +SWNS+I      G    +L +FR M      
Sbjct: 61  NALVSMYARCGRREDAARVFDEMRVRDAVSWNSLIAASRGAG---DALALFRRMLRSDAR 117

Query: 126 VLKAELLAGIISLCSQIGELELGR--QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
                    ++S C++ G   L     +H LV+  G FE  V V  AL+  Y +C     
Sbjct: 118 ACDRATFTTVLSECARAGAASLPACAMVHGLVVSCG-FEAEVPVGNALVTAYFECGSPAS 176

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
           A RVF  M  +N ++WTAMISG   ++ Y     LF  M R  V     T +  LLACA 
Sbjct: 177 AERVFHGMAEKNVITWTAMISGMARAELYKESFSLFGQMIRT-VDANNATYSCTLLACAR 235

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
               R G+ +HG     GF+ D H+ + LM +Y +C   +  A  +F   +  D V  + 
Sbjct: 236 SLAAREGQQVHGLVVKAGFEADLHVESGLMDVYSKCG-LMEDALTVFRSCREPDEVFLTV 294

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           I+ G++Q+G   +A +LF+ M     E +  T+  +L +    +  + G  +H  ++K  
Sbjct: 295 ILVGFAQNGLEEKAFELFAEMVGAGNEIDENTVSTVLGAFGASAPFALGKQIHALVIKRC 354

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
              +  + N L+NMYSKCG +  S Q+F+EM +++ VSW ++I+ +  HG+G E  QLF 
Sbjct: 355 FGVNTYVCNGLVNMYSKCGELRESVQVFDEMPSKNSVSWNSIIAAFARHGHGSEVYQLFE 414

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS 483
            M+  G +P  +T L++L AC+H G  K+   + N++  +  +   +EHYAC VD+LG++
Sbjct: 415 SMKADGAKPTDVTFLSLLHACSHVGSAKKGLEILNSMSSQYGVLPRMEHYACVVDMLGRA 474

Query: 484 GKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLS 543
           G ++DA   +   P   S  +  +L+ AC  HG  EV +  A +L+  +P   A Y LLS
Sbjct: 475 GLLDDAKSFIEDGPFTDSALLWQALMGACSFHGNSEVGKHAAEKLLLLDPSCTAAYVLLS 534

Query: 544 MVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIENE 579
            + S  G W    +V + M   GL K  G S IE E
Sbjct: 535 NIYSSEGRWDDRAKVMKRMSEMGLRKDTGKSWIELE 570



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 127/443 (28%), Positives = 217/443 (48%), Gaps = 39/443 (8%)

Query: 132 LAGIISLCSQIGELELGRQIHALVIVDGS-FELS--------VFVS-TALLDLYSKCHHW 181
            +G+++ C + G+L LG  +HA V+ + + F L         V V+  AL+ +Y++C   
Sbjct: 14  FSGLLASCGREGDLRLGAALHAAVVKNPAHFRLCASRPWLRHVLVAWNALVSMYARCGRR 73

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKP-TRVTLTIVLLA 240
             A RVF++M +R+ VSW ++I+    S+     + LFR M R   +   R T T VL  
Sbjct: 74  EDAARVFDEMRVRDAVSWNSLIAA---SRGAGDALALFRRMLRSDARACDRATFTTVLSE 130

Query: 241 CAELRDLRNGKA-------IHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERT 293
           CA     R G A       +HG    CGF+ +  +  AL+  Y EC       R +F   
Sbjct: 131 CA-----RAGAASLPACAMVHGLVVSCGFEAEVPVGNALVTAYFECGSPASAER-VFHGM 184

Query: 294 KVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGL 353
             K+V+ W+++I G +++    E+  LF +M +  ++ N+ T    L +C R      G 
Sbjct: 185 AEKNVITWTAMISGMARAELYKESFSLFGQM-IRTVDANNATYSCTLLACARSLAAREGQ 243

Query: 354 GVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHG 413
            VH  ++KAG   D+ + + LM++YSKCG +  +  +F      D V  T ++ G+  +G
Sbjct: 244 QVHGLVVKAGFEADLHVESGLMDVYSKCGLMEDALTVFRSCREPDEVFLTVILVGFAQNG 303

Query: 414 YGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY 473
             E+A +LF EM  +G E D  TV  +L A   +      + +   V+K       +  Y
Sbjct: 304 LEEKAFELFAEMVGAGNEIDENTVSTVLGAFGASAPFALGKQIHALVIKR---CFGVNTY 360

Query: 474 AC--YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGR-LEVAEMLAHQLIE 530
            C   V++  K G++ ++ +V   MP K S    +S+++A   HG   EV ++   + ++
Sbjct: 361 VCNGLVNMYSKCGELRESVQVFDEMPSKNSVS-WNSIIAAFARHGHGSEVYQLF--ESMK 417

Query: 531 AEPENAANYTLLSMV--CSESGN 551
           A+     + T LS++  CS  G+
Sbjct: 418 ADGAKPTDVTFLSLLHACSHVGS 440



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 101/411 (24%), Positives = 183/411 (44%), Gaps = 6/411 (1%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQL-HCTALKSGSDADPVISN 67
             L L+++ L       + A   +V+  CA A         + H   +  G +A+  + N
Sbjct: 103 DALALFRRMLRSDARACDRATFTTVLSECARAGAASLPACAMVHGLVVSCGFEAEVPVGN 162

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +L++ Y +   P SA ++F  M  ++ I+W ++I+   +   Y  S  +F +M       
Sbjct: 163 ALVTAYFECGSPASAERVFHGMAEKNVITWTAMISGMARAELYKESFSLFGQMIRTVDAN 222

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
            A     +++    +   E G+Q+H LV+  G FE  + V + L+D+YSKC     AL V
Sbjct: 223 NATYSCTLLACARSLAARE-GQQVHGLVVKAG-FEADLHVESGLMDVYSKCGLMEDALTV 280

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F      +EV  T ++ G   +   +   +LF  M   G +    T++ VL A       
Sbjct: 281 FRSCREPDEVFLTVILVGFAQNGLEEKAFELFAEMVGAGNEIDENTVSTVLGAFGASAPF 340

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
             GK IH       F  + ++   L++MY +C E L  +  +F+    K+ V W+SII  
Sbjct: 341 ALGKQIHALVIKRCFGVNTYVCNGLVNMYSKCGE-LRESVQVFDEMPSKNSVSWNSIIAA 399

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV-HCYIMKAGLNF 366
           +++ G  SE  +LF  M+ +  +P  VT L++L +C+       GL + +    + G+  
Sbjct: 400 FARHGHGSEVYQLFESMKADGAKPTDVTFLSLLHACSHVGSAKKGLEILNSMSSQYGVLP 459

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARD-FVSWTTLISGYGFHGYGE 416
            +     +++M  + G +  +     +    D  + W  L+    FHG  E
Sbjct: 460 RMEHYACVVDMLGRAGLLDDAKSFIEDGPFTDSALLWQALMGACSFHGNSE 510



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 125/253 (49%), Gaps = 4/253 (1%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           M     Y+++  L+ Q +    + +N A     + ACA +   +  G Q+H   +K+G +
Sbjct: 199 MARAELYKESFSLFGQMIRT--VDANNATYSCTLLACARSLAARE-GQQVHGLVVKAGFE 255

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
           AD  + + L+ +Y+K    E A  +F      D +    I+  F QNG   ++ E+F EM
Sbjct: 256 ADLHVESGLMDVYSKCGLMEDALTVFRSCREPDEVFLTVILVGFAQNGLEEKAFELFAEM 315

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
              G  +    ++ ++          LG+QIHALVI    F ++ +V   L+++YSKC  
Sbjct: 316 VGAGNEIDENTVSTVLGAFGASAPFALGKQIHALVI-KRCFGVNTYVCNGLVNMYSKCGE 374

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
              +++VF++M  +N VSW ++I+      +      LF +M+ +G KPT VT   +L A
Sbjct: 375 LRESVQVFDEMPSKNSVSWNSIIAAFARHGHGSEVYQLFESMKADGAKPTDVTFLSLLHA 434

Query: 241 CAELRDLRNGKAI 253
           C+ +   + G  I
Sbjct: 435 CSHVGSAKKGLEI 447


>gi|242067301|ref|XP_002448927.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
 gi|241934770|gb|EES07915.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
          Length = 572

 Score =  291 bits (744), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 161/459 (35%), Positives = 257/459 (55%), Gaps = 31/459 (6%)

Query: 149 RQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCID 208
           R  HAL    GS +   FV TAL+  Y+ C     A +VF+ M +R+ VSW  M+     
Sbjct: 90  RGAHALAFRVGSLD-DGFVRTALVGAYAACGCVGDARKVFDGMAVRDVVSWGVMLDSYCQ 148

Query: 209 SQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHL 268
           ++NY   +  F  M+  GV   ++ L  VL AC  +R LR GK+IH Y        + HL
Sbjct: 149 TRNYKEALLQFAKMKNSGVLSDQLILATVLSACGHIRHLRTGKSIHSYMLVSDILINAHL 208

Query: 269 SAALMHMYCECT-----EALHP-------------------------ARIIFERTKVKDV 298
           S+AL+++Y  C      E L+                          AR IF+    KDV
Sbjct: 209 SSALINLYASCASMEMAEKLYNGMPRKDLVSSTAMVFGYARNRKFEIARYIFDGMPEKDV 268

Query: 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCY 358
           V WS++I GY+ S   +EA+ LF+ M+   I P+ VT+L+++S+C     L     +H +
Sbjct: 269 VSWSAMISGYADSNQPNEALSLFNDMQECGIRPDEVTMLSVISACANLGSLDKAKWIHAF 328

Query: 359 IMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEA 418
           I   GLN  + I NAL++M++KCG I  +  IFNEM  ++ ++WT++I+ +  HG G+ A
Sbjct: 329 IKNNGLNKILHICNALIDMFAKCGGINLALNIFNEMPQKNVITWTSMITAFAMHGDGKSA 388

Query: 419 LQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVD 478
           L LF +M+  GVEP+ +T L +L AC HAGLV E  +LF++++++  I    EHY C VD
Sbjct: 389 LCLFEQMRNEGVEPNEVTFLNLLYACCHAGLVHEGRSLFSSMVQQYGIEPKHEHYGCMVD 448

Query: 479 LLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAAN 538
           LLG++  +++A  ++ +M ++P+  +  SL++AC +HG L++    A ++++ +P +   
Sbjct: 449 LLGRAKLMQEAVNLIESMHLRPNVPVWGSLLAACWMHGDLKLGAFAAKKILQLDPNHDGA 508

Query: 539 YTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
             LLS +  +S N   A+EV  VM+ +G+SK  G S ++
Sbjct: 509 SVLLSKIYMKSDNLNDAQEVRDVMKLQGVSKETGLSWMD 547



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 107/371 (28%), Positives = 175/371 (47%), Gaps = 37/371 (9%)

Query: 13  LYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISM 72
           L +  L P G  +    LP+++++ A       +    H  A + GS  D  +  +L+  
Sbjct: 59  LRRTGLPPPGPRA----LPALLRSAARCVGAGAYVRGAHALAFRVGSLDDGFVRTALVGA 114

Query: 73  YAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELL 132
           YA       A ++FD M  RD +SW  +++ + Q   Y  +L  F +M   G +    +L
Sbjct: 115 YAACGCVGDARKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLQFAKMKNSGVLSDQLIL 174

Query: 133 AGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKC-------------- 178
           A ++S C  I  L  G+ IH+ ++V     ++  +S+AL++LY+ C              
Sbjct: 175 ATVLSACGHIRHLRTGKSIHSYMLVS-DILINAHLSSALINLYASCASMEMAEKLYNGMP 233

Query: 179 -----------------HHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRA 221
                              + IA  +F+ M  ++ VSW+AMISG  DS   +  + LF  
Sbjct: 234 RKDLVSSTAMVFGYARNRKFEIARYIFDGMPEKDVVSWSAMISGYADSNQPNEALSLFND 293

Query: 222 MQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTE 281
           MQ  G++P  VT+  V+ ACA L  L   K IH +    G +   H+  AL+ M+ +C  
Sbjct: 294 MQECGIRPDEVTMLSVISACANLGSLDKAKWIHAFIKNNGLNKILHICNALIDMFAKCG- 352

Query: 282 ALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILS 341
            ++ A  IF     K+V+ W+S+I  ++  GD   A+ LF +MR E +EPN VT L +L 
Sbjct: 353 GINLALNIFNEMPQKNVITWTSMITAFAMHGDGKSALCLFEQMRNEGVEPNEVTFLNLLY 412

Query: 342 SCTRQSFLSHG 352
           +C     +  G
Sbjct: 413 ACCHAGLVHEG 423



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/362 (23%), Positives = 165/362 (45%), Gaps = 38/362 (10%)

Query: 3   SKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLH----------- 51
           ++++ E  L   K  +  SG+ S+  IL +V+ AC + + H   G  +H           
Sbjct: 149 TRNYKEALLQFAK--MKNSGVLSDQLILATVLSACGHIR-HLRTGKSIHSYMLVSDILIN 205

Query: 52  -------------CTALKSGSD-------ADPVISNSLISMYAKFSKPESAYQLFDEMPY 91
                        C +++            D V S +++  YA+  K E A  +FD MP 
Sbjct: 206 AHLSSALINLYASCASMEMAEKLYNGMPRKDLVSSTAMVFGYARNRKFEIARYIFDGMPE 265

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQI 151
           +D +SW+++I+ +  +     +L +F +M  CG       +  +IS C+ +G L+  + I
Sbjct: 266 KDVVSWSAMISGYADSNQPNEALSLFNDMQECGIRPDEVTMLSVISACANLGSLDKAKWI 325

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQN 211
           HA +  +G  ++ + +  AL+D+++KC    +AL +F +M  +N ++WT+MI+      +
Sbjct: 326 HAFIKNNGLNKI-LHICNALIDMFAKCGGINLALNIFNEMPQKNVITWTSMITAFAMHGD 384

Query: 212 YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAI-HGYAYCCGFDFDHHLSA 270
             + + LF  M+ EGV+P  VT   +L AC     +  G+++        G +  H    
Sbjct: 385 GKSALCLFEQMRNEGVEPNEVTFLNLLYACCHAGLVHEGRSLFSSMVQQYGIEPKHEHYG 444

Query: 271 ALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE 330
            ++ +            +I       +V +W S++      GDL   +  F+  ++ +++
Sbjct: 445 CMVDLLGRAKLMQEAVNLIESMHLRPNVPVWGSLLAACWMHGDLK--LGAFAAKKILQLD 502

Query: 331 PN 332
           PN
Sbjct: 503 PN 504


>gi|225435652|ref|XP_002283361.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36730
           [Vitis vinifera]
          Length = 461

 Score =  291 bits (744), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 159/430 (36%), Positives = 247/430 (57%), Gaps = 5/430 (1%)

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV-SWTAMISGCID 208
           Q+H+L++          +S  +  + S    +  A  VF+++ IR  + +W ++I     
Sbjct: 20  QLHSLILKTAKDHNPDLISQFIFSISSVSIEF--ARLVFDRLPIRAPIFAWNSIIRAYTK 77

Query: 209 SQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHL 268
           S      + LF  MQR G+KP   T   V+ AC     +  G A+H      GFD D ++
Sbjct: 78  SSVPIEAVKLFSQMQRVGLKPDNFTYPFVVKACGRSLVVGAGGAMHSIIVKAGFDSDRYV 137

Query: 269 SAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER 328
              L+ MY     A+  AR +F    V+DVV WSS+I GY      ++A+ +F  M L  
Sbjct: 138 GNTLLRMYANLN-AVGLARRVFNEMTVRDVVSWSSMIAGYVACNCQADALMVFRHMMLAN 196

Query: 329 IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSH 388
            +PNSVTL+++LS+CTR   +  G  +H YI+   +  DV++G A++ MYSKCG I  + 
Sbjct: 197 EKPNSVTLVSLLSACTRLLNIGVGESIHSYIIVNCIGLDVALGTAILEMYSKCGHIEKAL 256

Query: 389 QIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG 448
           ++FN +  ++  SWT +ISG   H +GE+A+ LF +M+++G++PD+++   ILSAC+H G
Sbjct: 257 KVFNSLTEKNLQSWTIMISGLADHSHGEDAISLFTQMEQTGLQPDSMSFSEILSACSHLG 316

Query: 449 LVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSL 508
           LV E +T F+ ++K   I   +EHY C VD+  ++G IE+A +++  MPM+P++ IL S 
Sbjct: 317 LVDEGQTFFSQMVKIYNIRPTMEHYGCMVDMFARAGMIEEAYEIIKNMPMEPNSVILRSF 376

Query: 509 VSACRIHGRL-EVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567
           + ACR  GR+    E L   L+E EP+  ANY L S V S SG W  A ++   M+ KGL
Sbjct: 377 IGACRNDGRVFGFDENLRRLLLEIEPDLGANYVLASGVSSLSGCWNEAADLRVSMKEKGL 436

Query: 568 SKSYGFSRIE 577
            K  G+SR+E
Sbjct: 437 KKVPGWSRVE 446



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 107/403 (26%), Positives = 192/403 (47%), Gaps = 20/403 (4%)

Query: 40  AQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTI-SWN 98
           ++T  H  LQLH   LK+  D +P + +  I   +  S  E A  +FD +P R  I +WN
Sbjct: 12  SKTTTHL-LQLHSLILKTAKDHNPDLISQFIFSISSVSI-EFARLVFDRLPIRAPIFAWN 69

Query: 99  SIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVD 158
           SII  +T++   + ++++F +M   G          ++  C +   +  G  +H+ +IV 
Sbjct: 70  SIIRAYTKSSVPIEAVKLFSQMQRVGLKPDNFTYPFVVKACGRSLVVGAGGAMHS-IIVK 128

Query: 159 GSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDL 218
             F+   +V   LL +Y+  +   +A RVF +M +R+ VSW++MI+G +        + +
Sbjct: 129 AGFDSDRYVGNTLLRMYANLNAVGLARRVFNEMTVRDVVSWSSMIAGYVACNCQADALMV 188

Query: 219 FRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCE 278
           FR M     KP  VTL  +L AC  L ++  G++IH Y        D  L  A++ MY +
Sbjct: 189 FRHMMLANEKPNSVTLVSLLSACTRLLNIGVGESIHSYIIVNCIGLDVALGTAILEMYSK 248

Query: 279 CTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLA 338
           C   +  A  +F     K++  W+ +I G +      +A+ LF++M    ++P+S++   
Sbjct: 249 CGH-IEKALKVFNSLTEKNLQSWTIMISGLADHSHGEDAISLFTQMEQTGLQPDSMSFSE 307

Query: 339 ILSSCTRQSFLSHGLGVHCYIMKA-GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA- 396
           ILS+C+    +  G      ++K   +   +     +++M+++ G I  +++I   M   
Sbjct: 308 ILSACSHLGLVDEGQTFFSQMVKIYNIRPTMEHYGCMVDMFARAGMIEEAYEIIKNMPME 367

Query: 397 ------RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPD 433
                 R F+       G  F G+ E   +L LE     +EPD
Sbjct: 368 PNSVILRSFIG-ACRNDGRVF-GFDENLRRLLLE-----IEPD 403



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 162/335 (48%), Gaps = 37/335 (11%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           + + L+ Q +   GL  +    P V+KAC  +      G  +H   +K+G D+D  + N+
Sbjct: 83  EAVKLFSQ-MQRVGLKPDNFTYPFVVKACGRSLVVGAGG-AMHSIIVKAGFDSDRYVGNT 140

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           L+ MYA  +    A ++F+EM  RD +SW+S+I  +        +L +FR M L      
Sbjct: 141 LLRMYANLNAVGLARRVFNEMTVRDVVSWSSMIAGYVACNCQADALMVFRHMMLANEKPN 200

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
           +  L  ++S C+++  + +G  IH+ +IV+    L V + TA+L++YSKC H   AL+VF
Sbjct: 201 SVTLVSLLSACTRLLNIGVGESIHSYIIVN-CIGLDVALGTAILEMYSKCGHIEKALKVF 259

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
             +  +N  SWT MISG  D  + +  I LF  M++ G++P  ++ + +L AC+ L    
Sbjct: 260 NSLTEKNLQSWTIMISGLADHSHGEDAISLFTQMEQTGLQPDSMSFSEILSACSHL---- 315

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
            G    G  +       +++   + H  C                          ++  +
Sbjct: 316 -GLVDEGQTFFSQMVKIYNIRPTMEHYGC--------------------------MVDMF 348

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC 343
           +++G + EA ++   M +   EPNSV L + + +C
Sbjct: 349 ARAGMIEEAYEIIKNMPM---EPNSVILRSFIGAC 380


>gi|297824663|ref|XP_002880214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297326053|gb|EFH56473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 585

 Score =  291 bits (744), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 168/516 (32%), Positives = 283/516 (54%), Gaps = 24/516 (4%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSII------- 101
           Q H   +K G+       N L+  Y K  + + A +LFDEM  R+ ++WN +I       
Sbjct: 57  QKHGFMVKQGTYNSLFFQNKLLQAYTKIREFDDADKLFDEMLVRNIVTWNILIHGVIHRD 116

Query: 102 ---NCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVD 158
              N     GF   S  +  E+     +L      G+I LC+    +E G Q+H+L++  
Sbjct: 117 GDTNHRAHLGFCYLSRSLLSEV-----ILDHVSFIGLIRLCTDSTNVEAGNQLHSLIVKQ 171

Query: 159 GSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDL 218
           G  E + F+ST+L+D Y KC     A +VFE +++R+ V W A++S  + +   D    L
Sbjct: 172 G-LESNCFLSTSLVDFYGKCGLIGEARQVFEAVLVRDLVLWNALVSSYVLNGMIDEAFGL 230

Query: 219 FRAM--QREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMY 276
            + M  ++ G      TL+ +L AC     ++ GK IH   +   + FD  ++ AL++MY
Sbjct: 231 LKLMSSEKNGFTGDDFTLSSLLSACG----IKQGKQIHAIVFKLSYLFDIPVATALVNMY 286

Query: 277 CECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTL 336
            + +  +  A   FE   V+++V W+++I G+ Q+G+  EAM+LF +M  E ++P+ +T 
Sbjct: 287 AK-SNHMSDAHKCFESMVVRNIVSWNAMIVGFGQNGEGREAMRLFGQMLRENLQPDELTF 345

Query: 337 LAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA 396
            ++L SCT+ S +     V   + K G    +S+ N+L++ YS+ G+++ +   F+ +  
Sbjct: 346 ASVLCSCTKFSAIWEIKQVQAMVTKKGSAEFLSVANSLISSYSRTGNLSEALLCFHSIRE 405

Query: 397 RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETL 456
            D VSWT++I     HG+ EE+L++F  M +  ++PD IT L +LSAC+H GLV+E    
Sbjct: 406 PDLVSWTSVIGALASHGFAEESLRIFESMLQK-LQPDKITFLEVLSACSHGGLVQEGLRC 464

Query: 457 FNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG 516
           F  + +  KI    EHY C +DLLG++G I++A  V+ +MP +PST  L++   AC IH 
Sbjct: 465 FKRMTEVYKIEPEEEHYTCLIDLLGRAGFIDEAFDVLKSMPTEPSTHALAAFTGACNIHE 524

Query: 517 RLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNW 552
           ++E  +  A +L+E EP    NY+++S   +  G+W
Sbjct: 525 KIESMKWGAKKLLEIEPSKPVNYSIMSNAYASEGHW 560


>gi|147862014|emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera]
          Length = 822

 Score =  291 bits (744), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 173/599 (28%), Positives = 303/599 (50%), Gaps = 41/599 (6%)

Query: 17  ELHPSGLYSNTAILP--SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYA 74
            LH S    +  + P  S++ +C   ++    G QLH   +  G +  P++   L++ Y+
Sbjct: 162 RLHASSASQDLIVHPISSLLSSCTDVKSLAE-GRQLHGHIISLGFEQHPILVPKLVTFYS 220

Query: 75  KFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAG 134
            F+    A+ + +         WN +I+ + +NGF  ++L  +++M   G          
Sbjct: 221 AFNLLVDAHVITENSNILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPS 280

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           ++  C +  +L  G+++H   I     + S+ V  AL+ +Y KC    IA  +F+++  R
Sbjct: 281 VLKACGEELDLGFGKEVHE-SINASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIPER 339

Query: 195 NEVSWTAMIS-----------------------------------GCIDSQNYDTGIDLF 219
           + VSW +MIS                                   G + + NY   ++L 
Sbjct: 340 DAVSWNSMISVYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELL 399

Query: 220 RAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCEC 279
             M++ G     V L I L AC+ + D + GK IH +A    F     +  +L+ MY  C
Sbjct: 400 SQMRKXGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNSLITMYSRC 459

Query: 280 TEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAI 339
            +  H A ++F+  + K ++ W+SII G        EA  L   M L  IEPN VT+ ++
Sbjct: 460 KDLKH-AYLLFQLMEAKSLISWNSIISGCCHMDRSEEASFLLREMLLSGIEPNYVTIASV 518

Query: 340 LSSCTRQSFLSHGLGVHCYIMK-AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARD 398
           L  C R + L HG   HCY+ +       + + NAL++MY++ G +  + ++F+ +  RD
Sbjct: 519 LPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERD 578

Query: 399 FVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFN 458
            +++T++I+GYG  G G+ AL+LF EM    ++PD IT++A+LSAC+H+GLV + + LF 
Sbjct: 579 KMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQGQLLFE 638

Query: 459 NVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRL 518
            +     +   +EH+AC  DL G++G +  A +++  MP KP+  + ++L+ ACRIH   
Sbjct: 639 KMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRNMPYKPTPAMWATLIGACRIHRNT 698

Query: 519 EVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           E+ E  A +L+E +PEN   Y L++ + + +G W    +V   MR  G+ K+ G + ++
Sbjct: 699 EIGEWAAEKLLEMKPENPGYYVLIANMYAAAGCWNKLAKVRXFMRDLGVRKAPGCAWVD 757



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 137/467 (29%), Positives = 224/467 (47%), Gaps = 47/467 (10%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V   F ++ L  YKQ +   G+  +    PSV+KAC   +    FG ++H +   S    
Sbjct: 251 VRNGFCQKALSAYKQMVK-KGIRPDNFTYPSVLKACG-EELDLGFGKEVHESINASRIKW 308

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
             ++ N+LISMY K  K   A  LFD++P RD +SWNS+I+ +   G +  + E+F  M+
Sbjct: 309 SLIVHNALISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSMW 368

Query: 122 -------------LCGFVLKA-------ELL-------------AGIISL--CSQIGELE 146
                        + G  L+        ELL             A II L  CS IG+ +
Sbjct: 369 AEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKXGSHLDSVALIIGLGACSHIGDAK 428

Query: 147 LGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGC 206
           LG++IH+  I     E+   V  +L+ +YS+C     A  +F+ M  ++ +SW ++ISGC
Sbjct: 429 LGKEIHSFAIRSCFGEVDT-VKNSLITMYSRCKDLKHAYLLFQLMEAKSLISWNSIISGC 487

Query: 207 IDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDH 266
                 +    L R M   G++P  VT+  VL  CA + +L++GK  H Y      DF  
Sbjct: 488 CHMDRSEEASFLLREMLLSGIEPNYVTIASVLPLCARVANLQHGKEFHCY-MTRREDFKD 546

Query: 267 H--LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM 324
           H  L  AL+ MY    + L  AR +F+    +D + ++S+I GY   G+   A+KLF  M
Sbjct: 547 HLLLWNALVDMYARSGKVLE-ARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEM 605

Query: 325 RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA-GLNFDVSIGNALMNMYSKCGS 383
              +I+P+ +T++A+LS+C+    ++ G  +   +    GL   +     + +++ + G 
Sbjct: 606 NNFQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGL 665

Query: 384 ITSSHQIFNEMAARDFVS-WTTLISGYGFHG---YGEEALQLFLEMQ 426
           +  + +I   M  +   + W TLI     H     GE A +  LEM+
Sbjct: 666 LNKAKEIIRNMPYKPTPAMWATLIGACRIHRNTEIGEWAAEKLLEMK 712


>gi|222630191|gb|EEE62323.1| hypothetical protein OsJ_17112 [Oryza sativa Japonica Group]
          Length = 591

 Score =  291 bits (744), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 174/516 (33%), Positives = 269/516 (52%), Gaps = 9/516 (1%)

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC-GF 125
           NSL+SMYA+  + E A ++FDEM  RD +SWNS+I      G    +L +FR M      
Sbjct: 61  NSLVSMYARCGRREDAARVFDEMRVRDAVSWNSLIAASRGAG---DALALFRRMLRSDAR 117

Query: 126 VLKAELLAGIISLCSQIGELELGR--QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
                    ++S C++ G   L     +H LV+  G FE  V V  AL+  Y +C     
Sbjct: 118 ACDRATFTTVLSECARAGAASLPACAMVHGLVVSCG-FEAEVPVGNALVTAYFECGSPAS 176

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
           A RVF  M  +N ++WTAMISG   ++ Y     LF  M R  V     T +  LLACA 
Sbjct: 177 AERVFHGMAEKNVITWTAMISGMARAELYKESFSLFGQMIRT-VDANNATYSCALLACAR 235

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
               R G+ +HG     GF+ D H+ + LM +Y +C   +  A  +F   +  D V  + 
Sbjct: 236 SLAAREGQQVHGLVVKAGFEDDLHVESGLMDVYSKCG-LMEDALTVFRSCREPDEVFLTV 294

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           I+ G++Q+G   +A +LF+ M     E +  T+ A+L +    +  + G  +H  ++K  
Sbjct: 295 ILVGFAQNGLEEKAFELFAEMVGAGNEIDENTVSAVLGAFGASAPFALGKQIHALVIKRC 354

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
              +  + N L+NMYSKCG +  S ++F+EM +++ VSW ++I+ +  HG+G E  QLF 
Sbjct: 355 FGVNTYVCNGLVNMYSKCGELRESVRVFDEMPSKNSVSWNSIIAAFARHGHGSEVYQLFE 414

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS 483
            M+  G +P  +T L++L AC+H G  K+   + N++  +  +   +EHYAC VD+LG++
Sbjct: 415 SMKADGAKPTDVTFLSLLHACSHVGSAKKGLEILNSMSSQYGVLPRMEHYACVVDMLGRA 474

Query: 484 GKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLS 543
           G ++DA   +   P   +  +  +L+ AC  HG  EV +  A +L+  +P   A Y LLS
Sbjct: 475 GLLDDAKSFIEDGPFTDNALLWQALMGACSFHGNSEVGKYAAEKLLLLDPSCTAAYVLLS 534

Query: 544 MVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIENE 579
            + S  G W    +V + M   GL K  G S IE E
Sbjct: 535 NIYSSEGRWDDRAKVMKRMSEMGLRKDTGKSWIELE 570



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 127/443 (28%), Positives = 218/443 (49%), Gaps = 39/443 (8%)

Query: 132 LAGIISLCSQIGELELGRQIHALVIVDGS-FELS--------VFVS-TALLDLYSKCHHW 181
            +G+++ C + G+L LG  +HA V+ + + F L         V V+  +L+ +Y++C   
Sbjct: 14  FSGLLASCGREGDLRLGAALHAAVVKNPAHFRLCASRPWLRHVLVAWNSLVSMYARCGRR 73

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKP-TRVTLTIVLLA 240
             A RVF++M +R+ VSW ++I+    S+     + LFR M R   +   R T T VL  
Sbjct: 74  EDAARVFDEMRVRDAVSWNSLIAA---SRGAGDALALFRRMLRSDARACDRATFTTVLSE 130

Query: 241 CAELRDLRNGKA-------IHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERT 293
           CA     R G A       +HG    CGF+ +  +  AL+  Y EC       R +F   
Sbjct: 131 CA-----RAGAASLPACAMVHGLVVSCGFEAEVPVGNALVTAYFECGSPASAER-VFHGM 184

Query: 294 KVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGL 353
             K+V+ W+++I G +++    E+  LF +M +  ++ N+ T    L +C R      G 
Sbjct: 185 AEKNVITWTAMISGMARAELYKESFSLFGQM-IRTVDANNATYSCALLACARSLAAREGQ 243

Query: 354 GVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHG 413
            VH  ++KAG   D+ + + LM++YSKCG +  +  +F      D V  T ++ G+  +G
Sbjct: 244 QVHGLVVKAGFEDDLHVESGLMDVYSKCGLMEDALTVFRSCREPDEVFLTVILVGFAQNG 303

Query: 414 YGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY 473
             E+A +LF EM  +G E D  TV A+L A   +      + +   V+K       +  Y
Sbjct: 304 LEEKAFELFAEMVGAGNEIDENTVSAVLGAFGASAPFALGKQIHALVIKR---CFGVNTY 360

Query: 474 AC--YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGR-LEVAEMLAHQLIE 530
            C   V++  K G++ ++ +V   MP K S    +S+++A   HG   EV ++   + ++
Sbjct: 361 VCNGLVNMYSKCGELRESVRVFDEMPSKNSVS-WNSIIAAFARHGHGSEVYQLF--ESMK 417

Query: 531 AEPENAANYTLLSMV--CSESGN 551
           A+     + T LS++  CS  G+
Sbjct: 418 ADGAKPTDVTFLSLLHACSHVGS 440



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 101/411 (24%), Positives = 182/411 (44%), Gaps = 6/411 (1%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQL-HCTALKSGSDADPVISN 67
             L L+++ L       + A   +V+  CA A         + H   +  G +A+  + N
Sbjct: 103 DALALFRRMLRSDARACDRATFTTVLSECARAGAASLPACAMVHGLVVSCGFEAEVPVGN 162

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +L++ Y +   P SA ++F  M  ++ I+W ++I+   +   Y  S  +F +M       
Sbjct: 163 ALVTAYFECGSPASAERVFHGMAEKNVITWTAMISGMARAELYKESFSLFGQMIRTVDAN 222

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
            A     +++    +   E G+Q+H LV+  G FE  + V + L+D+YSKC     AL V
Sbjct: 223 NATYSCALLACARSLAARE-GQQVHGLVVKAG-FEDDLHVESGLMDVYSKCGLMEDALTV 280

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F      +EV  T ++ G   +   +   +LF  M   G +    T++ VL A       
Sbjct: 281 FRSCREPDEVFLTVILVGFAQNGLEEKAFELFAEMVGAGNEIDENTVSAVLGAFGASAPF 340

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
             GK IH       F  + ++   L++MY +C E     R +F+    K+ V W+SII  
Sbjct: 341 ALGKQIHALVIKRCFGVNTYVCNGLVNMYSKCGELRESVR-VFDEMPSKNSVSWNSIIAA 399

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV-HCYIMKAGLNF 366
           +++ G  SE  +LF  M+ +  +P  VT L++L +C+       GL + +    + G+  
Sbjct: 400 FARHGHGSEVYQLFESMKADGAKPTDVTFLSLLHACSHVGSAKKGLEILNSMSSQYGVLP 459

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARD-FVSWTTLISGYGFHGYGE 416
            +     +++M  + G +  +     +    D  + W  L+    FHG  E
Sbjct: 460 RMEHYACVVDMLGRAGLLDDAKSFIEDGPFTDNALLWQALMGACSFHGNSE 510



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 124/253 (49%), Gaps = 4/253 (1%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           M     Y+++  L+ Q +    + +N A     + ACA +   +  G Q+H   +K+G +
Sbjct: 199 MARAELYKESFSLFGQMIRT--VDANNATYSCALLACARSLAARE-GQQVHGLVVKAGFE 255

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
            D  + + L+ +Y+K    E A  +F      D +    I+  F QNG   ++ E+F EM
Sbjct: 256 DDLHVESGLMDVYSKCGLMEDALTVFRSCREPDEVFLTVILVGFAQNGLEEKAFELFAEM 315

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
              G  +    ++ ++          LG+QIHALVI    F ++ +V   L+++YSKC  
Sbjct: 316 VGAGNEIDENTVSAVLGAFGASAPFALGKQIHALVI-KRCFGVNTYVCNGLVNMYSKCGE 374

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
              ++RVF++M  +N VSW ++I+      +      LF +M+ +G KPT VT   +L A
Sbjct: 375 LRESVRVFDEMPSKNSVSWNSIIAAFARHGHGSEVYQLFESMKADGAKPTDVTFLSLLHA 434

Query: 241 CAELRDLRNGKAI 253
           C+ +   + G  I
Sbjct: 435 CSHVGSAKKGLEI 447


>gi|255578965|ref|XP_002530335.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
 gi|223530139|gb|EEF32051.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
          Length = 1530

 Score =  291 bits (744), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 149/455 (32%), Positives = 266/455 (58%), Gaps = 8/455 (1%)

Query: 125  FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI- 183
            F +    L   +  C  I ++   +Q+HAL+  +     ++ V+  LL +Y   HH  + 
Sbjct: 1078 FFMDPNCLISTLLNCKNICQI---KQLHALITTNSVLYNNLTVANKLLYVY--VHHKCLT 1132

Query: 184  -ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
             A  +F++M  +N VSW+ MI G +    +      F+ + R GV+P   TL  V+ AC 
Sbjct: 1133 DAYALFDEMPQKNPVSWSIMIGGFVKVGEFMQCYKTFKELIRNGVQPDNYTLPFVIKACR 1192

Query: 243  ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
            +   L  G+ IH      G   DH + AAL+ MY +C + +  A+++F+    KD+V W+
Sbjct: 1193 DTVALDMGRLIHCVVLKYGLHLDHFVCAALVDMYAKC-KVIEDAKLLFDVMPSKDLVTWT 1251

Query: 303  SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
             +I GY++ G+  E++ LF  +R E   P+ + +++I+++C +   ++    VH Y+ + 
Sbjct: 1252 VMIGGYAECGNAKESLVLFDHLREEGFVPDKIAMVSIVNACAKLGAMNKARFVHEYVNRN 1311

Query: 363  GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
              + DV +G A+++MY+KCG + S+ +IF+ M  ++ +SW+ +I+ YG+HG G++AL+LF
Sbjct: 1312 RFSLDVILGTAMIDMYAKCGDVDSAREIFDNMHHKNVISWSAMIAAYGYHGQGKKALELF 1371

Query: 423  LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGK 482
              M  SG+ P+ IT +++L AC+HAGLV++  TL + + +   +   I+H+ C VDLLG+
Sbjct: 1372 PMMLSSGILPNNITFVSLLYACSHAGLVEDGLTLLSLMWESFGVRPDIKHHTCMVDLLGR 1431

Query: 483  SGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLL 542
            +G++ +A + +  M ++    + SSL+ ACRIH R+++AE  A  L+E +P+N  NY LL
Sbjct: 1432 AGQLTEAFRFIENMTVEKDEGLWSSLLGACRIHKRIDLAEKAAKSLLELQPQNPGNYILL 1491

Query: 543  SMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            S + + +G W    ++  +M  + L K  G++ IE
Sbjct: 1492 SNIYANAGQWKDVAKIRDLMTKRKLKKIPGYTWIE 1526



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 103/368 (27%), Positives = 187/368 (50%), Gaps = 7/368 (1%)

Query: 64   VISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC 123
             ++N L+ +Y        AY LFDEMP ++ +SW+ +I  F + G +++  + F+E+   
Sbjct: 1116 TVANKLLYVYVHHKCLTDAYALFDEMPQKNPVSWSIMIGGFVKVGEFMQCYKTFKELIRN 1175

Query: 124  GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
            G       L  +I  C     L++GR IH +V+  G   L  FV  AL+D+Y+KC     
Sbjct: 1176 GVQPDNYTLPFVIKACRDTVALDMGRLIHCVVLKYG-LHLDHFVCAALVDMYAKCKVIED 1234

Query: 184  ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
            A  +F+ M  ++ V+WT MI G  +  N    + LF  ++ EG  P ++ +  ++ ACA+
Sbjct: 1235 AKLLFDVMPSKDLVTWTVMIGGYAECGNAKESLVLFDHLREEGFVPDKIAMVSIVNACAK 1294

Query: 244  LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
            L  +   + +H Y     F  D  L  A++ MY +C + +  AR IF+    K+V+ WS+
Sbjct: 1295 LGAMNKARFVHEYVNRNRFSLDVILGTAMIDMYAKCGD-VDSAREIFDNMHHKNVISWSA 1353

Query: 304  IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA- 362
            +I  Y   G   +A++LF  M    I PN++T +++L +C+    +  GL +   + ++ 
Sbjct: 1354 MIAAYGYHGQGKKALELFPMMLSSGILPNNITFVSLLYACSHAGLVEDGLTLLSLMWESF 1413

Query: 363  GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA-RDFVSWTTLISGYGFH---GYGEEA 418
            G+  D+     ++++  + G +T + +    M   +D   W++L+     H      E+A
Sbjct: 1414 GVRPDIKHHTCMVDLLGRAGQLTEAFRFIENMTVEKDEGLWSSLLGACRIHKRIDLAEKA 1473

Query: 419  LQLFLEMQ 426
             +  LE+Q
Sbjct: 1474 AKSLLELQ 1481



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/294 (29%), Positives = 140/294 (47%), Gaps = 9/294 (3%)

Query: 16   QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
            +EL  +G+  +   LP VIKAC         G  +HC  LK G   D  +  +L+ MYAK
Sbjct: 1170 KELIRNGVQPDNYTLPFVIKACRDT-VALDMGRLIHCVVLKYGLHLDHFVCAALVDMYAK 1228

Query: 76   FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
                E A  LFD MP +D ++W  +I  + + G    SL +F  +   GFV     +  I
Sbjct: 1229 CKVIEDAKLLFDVMPSKDLVTWTVMIGGYAECGNAKESLVLFDHLREEGFVPDKIAMVSI 1288

Query: 136  ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
            ++ C+++G +   R +H  V  +  F L V + TA++D+Y+KC     A  +F+ M  +N
Sbjct: 1289 VNACAKLGAMNKARFVHEYVNRN-RFSLDVILGTAMIDMYAKCGDVDSAREIFDNMHHKN 1347

Query: 196  EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
             +SW+AMI+           ++LF  M   G+ P  +T   +L AC+    + +G  +  
Sbjct: 1348 VISWSAMIAAYGYHGQGKKALELFPMMLSSGILPNNITFVSLLYACSHAGLVEDGLTLLS 1407

Query: 256  Y---AYCCGFDFDHHLS-AALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
                ++    D  HH     L+    + TEA    R I   T  KD  +WSS++
Sbjct: 1408 LMWESFGVRPDIKHHTCMVDLLGRAGQLTEAF---RFIENMTVEKDEGLWSSLL 1458


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  291 bits (744), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 159/445 (35%), Positives = 256/445 (57%), Gaps = 4/445 (0%)

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           +++ C     +  G+++HA +I    +   V++ST L+ LY+KC     A  VF++M  R
Sbjct: 16  LLNECVNKRAVREGQRVHAHMI-KTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMRER 74

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
           N VSWTAMISG          + LF  M R   +P   T   VL +C        G+ IH
Sbjct: 75  NVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIH 134

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
            + +   ++    + ++L+ MY +    +H AR +FE    +DVV  ++II GY+Q G  
Sbjct: 135 SHIFKRNYENHIFVGSSLLDMYAKAGR-IHEARGVFECLPERDVVSCTAIISGYAQLGLD 193

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
            EA++LF R++ E +  N VT  ++L++ +  + L HG  VH ++++  L F V + N+L
Sbjct: 194 EEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSL 253

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF-LEMQESGVEPD 433
           ++MYSKCG++  + +IFN M  R  +SW  ++ GY  HG G E ++LF L  +E+ V+PD
Sbjct: 254 IDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPD 313

Query: 434 AITVLAILSACNHAGLVKEAETLFNNVMKE-KKIALAIEHYACYVDLLGKSGKIEDACKV 492
           ++T LA+LS C+H GL  +   +F+ +M    +I   IEHY C +DLLG++G++E+A ++
Sbjct: 314 SVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFEL 373

Query: 493 VSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNW 552
           +  MP +P+  I  SL+ ACR+H    + E +  +L+E EPENA NY +LS + + +G W
Sbjct: 374 IKKMPFEPTAAIWGSLLGACRVHSNTNIGEFVGCRLLEIEPENAGNYVILSNLYASAGRW 433

Query: 553 LGAEEVWRVMRAKGLSKSYGFSRIE 577
                V  +M  K + K  G S IE
Sbjct: 434 EDVRNVRELMMEKAVIKEPGRSWIE 458



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 114/370 (30%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G ++H   +K+       +S  LI +Y K      A  +FDEM  R+ +SW ++I+ ++Q
Sbjct: 29  GQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMRERNVVSWTAMISGYSQ 88

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
            GF   +L +F +M            A ++S C+     ELGRQIH+  I   ++E  +F
Sbjct: 89  RGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSH-IFKRNYENHIF 147

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           V ++LLD+Y+K      A  VFE +  R+ VS TA+ISG       +  ++LF  +QREG
Sbjct: 148 VGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREG 207

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           +    VT   +L A + L  L +GK +H +   C   F   L  +L+ MY +C   L+ A
Sbjct: 208 MSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGN-LNYA 266

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE-RIEPNSVTLLAILSSCTR 345
           R IF    V+ V+ W++++ GYS+ G   E +KLF  MR E +++P+SVT LA+LS C+ 
Sbjct: 267 RKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSH 326

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGN--ALMNMYSKCGSITSSHQIFNEMAARDFVS-W 402
                 GL +   +M  G   +  I +   ++++  + G +  + ++  +M      + W
Sbjct: 327 GGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIKKMPFEPTAAIW 386

Query: 403 TTLISGYGFH 412
            +L+     H
Sbjct: 387 GSLLGACRVH 396



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 96/320 (30%), Positives = 170/320 (53%), Gaps = 9/320 (2%)

Query: 235 TIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTK 294
            ++L  C   R +R G+ +H +     +    +LS  L+ +Y +C E L  AR +F+  +
Sbjct: 14  NMLLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKC-ECLGCARHVFDEMR 72

Query: 295 VKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG 354
            ++VV W+++I GYSQ G  SEA+ LF +M     EPN  T   +LSSCT  S    G  
Sbjct: 73  ERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQ 132

Query: 355 VHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGY 414
           +H +I K      + +G++L++MY+K G I  +  +F  +  RD VS T +ISGY   G 
Sbjct: 133 IHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 192

Query: 415 GEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK-EKKIALAIEHY 473
            EEAL+LF  +Q  G+  + +T  ++L+A +    +   + + ++V++ E    + +++ 
Sbjct: 193 DEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQN- 251

Query: 474 ACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGR-LEVAEM--LAHQLIE 530
              +D+  K G +  A K+ + MP++      + LV   + HG+ +EV ++  L  +  +
Sbjct: 252 -SLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSK-HGKGIEVVKLFKLMREENK 309

Query: 531 AEPENAANYTLLSMVCSESG 550
            +P++     +LS  CS  G
Sbjct: 310 VKPDSVTFLAVLSG-CSHGG 328



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 128/530 (24%), Positives = 213/530 (40%), Gaps = 95/530 (17%)

Query: 4   KHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADP 63
           + F  + LHL+ Q L  S    N     +V+ +C      +  G Q+H    K   +   
Sbjct: 89  RGFASEALHLFVQMLR-SDTEPNEFTFATVLSSCTGFSGFE-LGRQIHSHIFKRNYENHI 146

Query: 64  VISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMF----RE 119
            + +SL+ MYAK  +   A  +F+ +P RD +S  +II+ + Q G    +LE+F    RE
Sbjct: 147 FVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQRE 206

Query: 120 MYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH 179
                +V  A LL  +    S +  L+ G+Q+H+ V+        V +  +L+D+YSKC 
Sbjct: 207 GMSSNYVTYASLLTAL----SGLAALDHGKQVHSHVL-RCELPFYVVLQNSLIDMYSKCG 261

Query: 180 HWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG-VKPTRVTLTIVL 238
           +   A ++F  M +R  +SW AM+ G          + LF+ M+ E  VKP  VT   VL
Sbjct: 262 NLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVL 321

Query: 239 LACAELRDLRNGKAIHGYAYCCGFD-FDH------HLSAALMHMYCECTEALHPARIIFE 291
             C+           HG     G + FD        + A + H  C              
Sbjct: 322 SGCS-----------HGGLEDKGLEMFDEMMNGGDEIEAGIEHYGC-------------- 356

Query: 292 RTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSH 351
                       +I    ++G + EA +L  +M     EP +    ++L +C   S  + 
Sbjct: 357 ------------VIDLLGRAGRVEEAFELIKKMPF---EPTAAIWGSLLGACRVHSNTNI 401

Query: 352 GLGVHCYIMKAGLNFDVSIGN--ALMNMYSKCGSITSSHQIFNEMAARDFV-----SWT- 403
           G  V C +++       + GN   L N+Y+  G       +   M  +  +     SW  
Sbjct: 402 GEFVGCRLLEIEPE---NAGNYVILSNLYASAGRWEDVRNVRELMMEKAVIKEPGRSWIE 458

Query: 404 ------TLISGYGFHGYGEEAL----QLFLEMQESGVEPDAITVLAILSA-------CNH 446
                 T  +    H   EE      +L ++ +ESG  PD   VL  +           H
Sbjct: 459 LDQTIHTFYASDRSHPRREEVFLKVRELLVKFKESGYVPDQSCVLYDVDEEQKEKILLGH 518

Query: 447 A-------GLVKEAETLFNNVMKEKKIALAIEHYACYV-DLLGKSGKIED 488
           +       GL+  +E +   V+K  +I +   ++A +V  + G+   I D
Sbjct: 519 SEKLALAFGLISTSEGVPLRVIKNLRICVDCHNFAKFVSKVYGRQVSIRD 568


>gi|413918945|gb|AFW58877.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 768

 Score =  291 bits (744), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 175/551 (31%), Positives = 285/551 (51%), Gaps = 6/551 (1%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEM 89
           L S ++ACA        G Q+H  A+KS +    ++ N+L++MY+K       + LF+ +
Sbjct: 149 LGSAVRACA-ELGDLGLGRQVHAQAIKSDNGGHLIVQNALVTMYSKSGSVGDGFALFERI 207

Query: 90  PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAG-IISLCSQ-IGELEL 147
             +D  SW SII    Q G  + +L +FREM   G     E   G +   CS  I  LE 
Sbjct: 208 RDKDLFSWGSIIAGLAQQGREMDALHIFREMIAEGMHHPNEFHFGSVFRACSVVINSLEY 267

Query: 148 GRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCI 207
           G QIH L  V    + + +   +L D+Y++C+    A++VF ++   + VSW ++I+   
Sbjct: 268 GEQIHGLC-VKYKLDRNSYAGCSLGDMYARCNKLDSAMKVFYRIESPDLVSWNSLINAFS 326

Query: 208 DSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
                   + LF  M+   +KP  +T+  +L AC     LR G++IH Y    G   D  
Sbjct: 327 ADGLLSEAMVLFSEMRYSSLKPDGITVMALLCACVGCDALRQGRSIHSYLVKLGLGGDVM 386

Query: 268 LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
           +  +L+ MY  C +    A  +F  T  +DVV W+SI+    Q   + +  KLF  +   
Sbjct: 387 VCNSLISMYTRCLD-FPSAMDVFHETNDRDVVTWNSILTACVQHRHMEDVFKLFRLLHSS 445

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
               + ++L  +LS+     +      VH Y  K GL  D  + NAL++ Y+KCGS+  +
Sbjct: 446 MPSLDRISLNNVLSASAELGYFEMAKQVHAYAFKVGLVSDAILSNALIDTYAKCGSLDDA 505

Query: 388 HQIFNEMA-ARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH 446
           +++F  M   RD  SW++LI GY   GY +EAL LF  M+  GV+P+ +T + +L AC+ 
Sbjct: 506 NKLFEIMGTGRDVFSWSSLIVGYAQFGYAKEALDLFARMRNLGVKPNHVTFVGVLIACSR 565

Query: 447 AGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILS 506
            GLV E    ++ +  E  I    EH +C +DLL ++G++ +A K V  MP +P   + +
Sbjct: 566 VGLVDEGCYYYSIMEPEYGIVPTKEHCSCVIDLLARAGRLSEAAKFVDQMPFEPDIIMWN 625

Query: 507 SLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566
           +L++A R H  +E+ +  A  ++  +P ++A Y LL  + + SGNW     + + MR+ G
Sbjct: 626 TLLAASRTHNDVEMGKRAAEGVLNIDPSHSAAYVLLCNIYASSGNWNEFARLKKDMRSSG 685

Query: 567 LSKSYGFSRIE 577
           + KS G S I+
Sbjct: 686 VQKSPGKSWIK 696



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 138/451 (30%), Positives = 227/451 (50%), Gaps = 7/451 (1%)

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           + ++SN LI+MY + + P+SA  +FD M  R+ +SW ++I    QN     ++ +F  M 
Sbjct: 79  NTILSNHLITMYGRCAAPDSARMVFDGMLDRNPVSWAAVIAAHAQNSRCADAMGLFSSML 138

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVI-VDGSFELSVFVSTALLDLYSKCHH 180
             G       L   +  C+++G+L LGRQ+HA  I  D    L   V  AL+ +YSK   
Sbjct: 139 RLGTAPDEFALGSAVRACAELGDLGLGRQVHAQAIKSDNGGHL--IVQNALVTMYSKSGS 196

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV-KPTRVTLTIVLL 239
                 +FE++  ++  SW ++I+G          + +FR M  EG+  P       V  
Sbjct: 197 VGDGFALFERIRDKDLFSWGSIIAGLAQQGREMDALHIFREMIAEGMHHPNEFHFGSVFR 256

Query: 240 ACA-ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDV 298
           AC+  +  L  G+ IHG       D + +   +L  MY  C + L  A  +F R +  D+
Sbjct: 257 ACSVVINSLEYGEQIHGLCVKYKLDRNSYAGCSLGDMYARCNK-LDSAMKVFYRIESPDL 315

Query: 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCY 358
           V W+S+I  +S  G LSEAM LFS MR   ++P+ +T++A+L +C     L  G  +H Y
Sbjct: 316 VSWNSLINAFSADGLLSEAMVLFSEMRYSSLKPDGITVMALLCACVGCDALRQGRSIHSY 375

Query: 359 IMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEA 418
           ++K GL  DV + N+L++MY++C    S+  +F+E   RD V+W ++++    H + E+ 
Sbjct: 376 LVKLGLGGDVMVCNSLISMYTRCLDFPSAMDVFHETNDRDVVTWNSILTACVQHRHMEDV 435

Query: 419 LQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVD 478
            +LF  +  S    D I++  +LSA    G  + A+ +     K   ++ AI   A  +D
Sbjct: 436 FKLFRLLHSSMPSLDRISLNNVLSASAELGYFEMAKQVHAYAFKVGLVSDAILSNA-LID 494

Query: 479 LLGKSGKIEDACKVVSTMPMKPSTRILSSLV 509
              K G ++DA K+   M         SSL+
Sbjct: 495 TYAKCGSLDDANKLFEIMGTGRDVFSWSSLI 525



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 124/432 (28%), Positives = 217/432 (50%), Gaps = 20/432 (4%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
             LH++++ +     + N     SV +AC+       +G Q+H   +K   D +     S
Sbjct: 230 DALHIFREMIAEGMHHPNEFHFGSVFRACSVVINSLEYGEQIHGLCVKYKLDRNSYAGCS 289

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           L  MYA+ +K +SA ++F  +   D +SWNS+IN F+ +G    ++ +F EM      LK
Sbjct: 290 LGDMYARCNKLDSAMKVFYRIESPDLVSWNSLINAFSADGLLSEAMVLFSEMRYSS--LK 347

Query: 129 AELLAGIISLCSQIG--ELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
            + +  +  LC+ +G   L  GR IH+ ++  G     V V  +L+ +Y++C  +  A+ 
Sbjct: 348 PDGITVMALLCACVGCDALRQGRSIHSYLVKLG-LGGDVMVCNSLISMYTRCLDFPSAMD 406

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VF +   R+ V+W ++++ C+  ++ +    LFR +        R++L  VL A AEL  
Sbjct: 407 VFHETNDRDVVTWNSILTACVQHRHMEDVFKLFRLLHSSMPSLDRISLNNVLSASAELGY 466

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV-KDVVIWSSII 305
               K +H YA+  G   D  LS AL+  Y +C  +L  A  +FE     +DV  WSS+I
Sbjct: 467 FEMAKQVHAYAFKVGLVSDAILSNALIDTYAKCG-SLDDANKLFEIMGTGRDVFSWSSLI 525

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCY---IMKA 362
            GY+Q G   EA+ LF+RMR   ++PN VT + +L +C+R   +  G    CY   IM+ 
Sbjct: 526 VGYAQFGYAKEALDLFARMRNLGVKPNHVTFVGVLIACSRVGLVDEG----CYYYSIMEP 581

Query: 363 --GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA-ARDFVSWTTLISGYGFHG---YGE 416
             G+       + ++++ ++ G ++ + +  ++M    D + W TL++    H     G+
Sbjct: 582 EYGIVPTKEHCSCVIDLLARAGRLSEAAKFVDQMPFEPDIIMWNTLLAASRTHNDVEMGK 641

Query: 417 EALQLFLEMQES 428
            A +  L +  S
Sbjct: 642 RAAEGVLNIDPS 653



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 150/321 (46%), Gaps = 25/321 (7%)

Query: 241 CAELRDLRNGKAIH--------GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFER 292
           C+ LR    G+ +H        G AY      +  LS  L+ MY  C  A   AR++F+ 
Sbjct: 50  CSRLRSFPQGRLVHRHLLASSAGAAYLAR---NTILSNHLITMYGRCA-APDSARMVFDG 105

Query: 293 TKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHG 352
              ++ V W+++I  ++Q+   ++AM LFS M      P+   L + + +C     L  G
Sbjct: 106 MLDRNPVSWAAVIAAHAQNSRCADAMGLFSSMLRLGTAPDEFALGSAVRACAELGDLGLG 165

Query: 353 LGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFH 412
             VH   +K+     + + NAL+ MYSK GS+     +F  +  +D  SW ++I+G    
Sbjct: 166 RQVHAQAIKSDNGGHLIVQNALVTMYSKSGSVGDGFALFERIRDKDLFSWGSIIAGLAQQ 225

Query: 413 GYGEEALQLFLEMQESGV-EPDAITVLAILSACNHA-GLVKEAETLFNNVMKEKKIALAI 470
           G   +AL +F EM   G+  P+     ++  AC+     ++  E +    +K K   L  
Sbjct: 226 GREMDALHIFREMIAEGMHHPNEFHFGSVFRACSVVINSLEYGEQIHGLCVKYK---LDR 282

Query: 471 EHYA-CYV-DLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
             YA C + D+  +  K++ A KV   +   P     +SL++A    G L  A +L  ++
Sbjct: 283 NSYAGCSLGDMYARCNKLDSAMKVFYRIE-SPDLVSWNSLINAFSADGLLSEAMVLFSEM 341

Query: 529 IEA--EPENAANYTLLSMVCS 547
             +  +P+     T+++++C+
Sbjct: 342 RYSSLKPD---GITVMALLCA 359


>gi|302803813|ref|XP_002983659.1| hypothetical protein SELMODRAFT_328 [Selaginella moellendorffii]
 gi|300148496|gb|EFJ15155.1| hypothetical protein SELMODRAFT_328 [Selaginella moellendorffii]
          Length = 917

 Score =  291 bits (744), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 169/542 (31%), Positives = 298/542 (54%), Gaps = 13/542 (2%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           F ++ +HL+++ L   G+  +     S+I   A  Q  +     +    ++SG + D  +
Sbjct: 387 FCDEAVHLFRRML-AEGITPDKFTFISIIDGTARMQEAKILSELM----VESGVELDVFL 441

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
            ++LI+M++++     A  LFD+M  RD + W SII+ + Q+G    +L   R M L G 
Sbjct: 442 VSALINMHSRYGNVREARSLFDDMKDRDIVMWTSIISSYVQHGSSDDALGCTRLMRLEGL 501

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
           +     L   ++ C+ +  L  G+ IHA  I  G F  S  V  AL+++Y+KC     A 
Sbjct: 502 MGNDFTLVTALNACASLTALSEGKLIHAHAIERG-FAASPAVGNALINMYAKCGCLEEAD 560

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
           RVF Q   +N VSW  + +  +    +   + LF+ MQ EG+K  +V+   VL  C+   
Sbjct: 561 RVFHQ-CGKNLVSWNTIAAAYVQRDKWREALQLFQEMQLEGLKADKVSFVTVLNGCSSAS 619

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
           +   G+ IH      G + DH +S AL++MY   +++L  A  IF R + +D+V W+++I
Sbjct: 620 E---GRKIHNILLETGMESDHIVSTALLNMYT-ASKSLDEASRIFSRMEFRDIVSWNAMI 675

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILS--SCTRQSFLSHGLGVHCYIMKAG 363
            G ++ G   EA+++F RM+LE + P+ ++ + +L+  S +  S L     V   I   G
Sbjct: 676 AGKAEHGLSREAIQMFQRMQLEGVAPDKISFVTVLNAFSGSSPSSLKQARLVEKLISDQG 735

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
              D  +GNA+++M+ + G +  + + F  +  RD  SW  +++ +  HG  E+AL+LF 
Sbjct: 736 YETDTIVGNAIVSMFGRSGRLAEARRAFERIRERDAASWNVIVTAHAQHGEVEQALKLFR 795

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS 483
            MQ+    PD+IT++++LSAC+H GL++E    F ++ +E  IA + EHY C VDLL ++
Sbjct: 796 RMQQESSRPDSITLVSVLSACSHGGLIEEGYHHFTSMGREFGIAGSQEHYGCVVDLLARA 855

Query: 484 GKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLS 543
           G+++ A +++  MP+  S  +  +L+SAC++ G  + A+ +  +++E +P   A Y +LS
Sbjct: 856 GRLDQAEELLRKMPVPASYVLWMTLLSACKVQGDEKRAKRVGERVMELDPRRPAAYVVLS 915

Query: 544 MV 545
            V
Sbjct: 916 SV 917



 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 146/483 (30%), Positives = 262/483 (54%), Gaps = 9/483 (1%)

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D ++ N+ I MY K    E A  +F  + +   +SWNS++  F ++G + ++ ++F+ M 
Sbjct: 36  DDLVQNATIHMYGKCGCVEDAVSVFQSLDHPSQVSWNSLLAAFARDGQFQQAFQIFQRMK 95

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
           L G          ++  CS IG+L  G+ +H  V+  G  E +V V T+L+ +Y KC   
Sbjct: 96  LQGLAPDRITFVTVLDGCSAIGDLSRGKLLHGFVLEAG-LERNVMVGTSLIKMYGKCGCV 154

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             A RVF+++ +++ VSWT+MI   +        ++LF  M+  GV P R+T    + AC
Sbjct: 155 EDARRVFDKLALQDVVSWTSMIMTYVQHDRCVEALELFHRMRPSGVLPNRITYATAISAC 214

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A +  + +GK IH      GF+ D  +S A+++MY +C  +L  AR +FER    + V W
Sbjct: 215 AHVESMADGKLIHSQVLEDGFESDVVVSCAIVNMYGKCG-SLEDAREVFERMPHPNTVSW 273

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLER-IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           ++I+   +Q G   EA+  F RM+L+  I P+ VT + IL++C+  + L+ G  +H  I+
Sbjct: 274 NAIVAACTQHGCCVEALWYFQRMQLQGGITPDKVTFITILNACSSPATLTFGELLHECIL 333

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
           + G +  + +GN +M MYS CG I ++   F+ M  RD +SW T+ISG+   G+ +EA+ 
Sbjct: 334 QCGYDTHLIVGNCIMTMYSSCGRIDNAAAFFSTMVERDAISWNTIISGHAQAGFCDEAVH 393

Query: 421 LFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLL 480
           LF  M   G+ PD  T ++I+   +    ++EA+ L + +M E  + L +   +  +++ 
Sbjct: 394 LFRRMLAEGITPDKFTFISII---DGTARMQEAKIL-SELMVESGVELDVFLVSALINMH 449

Query: 481 GKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYT 540
            + G + +A  +   M  +    + +S++S+   HG  + A +   +L+  E     ++T
Sbjct: 450 SRYGNVREARSLFDDMKDRDIV-MWTSIISSYVQHGSSDDA-LGCTRLMRLEGLMGNDFT 507

Query: 541 LLS 543
           L++
Sbjct: 508 LVT 510



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 135/440 (30%), Positives = 236/440 (53%), Gaps = 9/440 (2%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           + L L+ + + PSG+  N     + I ACA+ ++    G  +H   L+ G ++D V+S +
Sbjct: 187 EALELFHR-MRPSGVLPNRITYATAISACAHVESMAD-GKLIHSQVLEDGFESDVVVSCA 244

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           +++MY K    E A ++F+ MP+ +T+SWN+I+   TQ+G  V +L  F+ M L G +  
Sbjct: 245 IVNMYGKCGSLEDAREVFERMPHPNTVSWNAIVAACTQHGCCVEALWYFQRMQLQGGITP 304

Query: 129 AEL-LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
            ++    I++ CS    L  G  +H  ++  G ++  + V   ++ +YS C     A   
Sbjct: 305 DKVTFITILNACSSPATLTFGELLHECILQCG-YDTHLIVGNCIMTMYSSCGRIDNAAAF 363

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F  MV R+ +SW  +ISG   +   D  + LFR M  EG+ P + T   ++   A +++ 
Sbjct: 364 FSTMVERDAISWNTIISGHAQAGFCDEAVHLFRRMLAEGITPDKFTFISIIDGTARMQE- 422

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
              K +       G + D  L +AL++M+      +  AR +F+  K +D+V+W+SII  
Sbjct: 423 --AKILSELMVESGVELDVFLVSALINMHSRYGN-VREARSLFDDMKDRDIVMWTSIISS 479

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
           Y Q G   +A+     MRLE +  N  TL+  L++C   + LS G  +H + ++ G    
Sbjct: 480 YVQHGSSDDALGCTRLMRLEGLMGNDFTLVTALNACASLTALSEGKLIHAHAIERGFAAS 539

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
            ++GNAL+NMY+KCG +  + ++F++   ++ VSW T+ + Y       EALQLF EMQ 
Sbjct: 540 PAVGNALINMYAKCGCLEEADRVFHQ-CGKNLVSWNTIAAAYVQRDKWREALQLFQEMQL 598

Query: 428 SGVEPDAITVLAILSACNHA 447
            G++ D ++ + +L+ C+ A
Sbjct: 599 EGLKADKVSFVTVLNGCSSA 618



 Score =  225 bits (573), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 156/533 (29%), Positives = 272/533 (51%), Gaps = 17/533 (3%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G+  +     +++ AC+   T   FG  LH   L+ G D   ++ N +++MY+   + ++
Sbjct: 301 GITPDKVTFITILNACSSPATLT-FGELLHECILQCGYDTHLIVGNCIMTMYSSCGRIDN 359

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A   F  M  RD ISWN+II+   Q GF   ++ +FR M   G          II   ++
Sbjct: 360 AAAFFSTMVERDAISWNTIISGHAQAGFCDEAVHLFRRMLAEGITPDKFTFISIIDGTAR 419

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
           + E     +I + ++V+   EL VF+ +AL++++S+  +   A  +F+ M  R+ V WT+
Sbjct: 420 MQEA----KILSELMVESGVELDVFLVSALINMHSRYGNVREARSLFDDMKDRDIVMWTS 475

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           +IS  +   + D  +   R M+ EG+     TL   L ACA L  L  GK IH +A   G
Sbjct: 476 IISSYVQHGSSDDALGCTRLMRLEGLMGNDFTLVTALNACASLTALSEGKLIHAHAIERG 535

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
           F     +  AL++MY +C   L  A  +F +   K++V W++I   Y Q     EA++LF
Sbjct: 536 FAASPAVGNALINMYAKCG-CLEEADRVFHQCG-KNLVSWNTIAAAYVQRDKWREALQLF 593

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
             M+LE ++ + V+ + +L+ C   S  S G  +H  +++ G+  D  +  AL+NMY+  
Sbjct: 594 QEMQLEGLKADKVSFVTVLNGC---SSASEGRKIHNILLETGMESDHIVSTALLNMYTAS 650

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
            S+  + +IF+ M  RD VSW  +I+G   HG   EA+Q+F  MQ  GV PD I+ + +L
Sbjct: 651 KSLDEASRIFSRMEFRDIVSWNAMIAGKAEHGLSREAIQMFQRMQLEGVAPDKISFVTVL 710

Query: 442 SACNHAGL--VKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           +A + +    +K+A  L   ++ ++            V + G+SG++ +A +    +  +
Sbjct: 711 NAFSGSSPSSLKQAR-LVEKLISDQGYETDTIVGNAIVSMFGRSGRLAEARRAFERIRER 769

Query: 500 PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV--CSESG 550
            +    + +V+A   HG +E A  L  ++ + E     + TL+S++  CS  G
Sbjct: 770 DAAS-WNVIVTAHAQHGEVEQALKLFRRM-QQESSRPDSITLVSVLSACSHGG 820



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 105/364 (28%), Positives = 188/364 (51%), Gaps = 6/364 (1%)

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           ++ LC++   +  GR +H+ V     F     V  A + +Y KC     A+ VF+ +   
Sbjct: 8   LLGLCAKKSAIAEGRFVHSRVEAS-EFRRDDLVQNATIHMYGKCGCVEDAVSVFQSLDHP 66

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
           ++VSW ++++       +     +F+ M+ +G+ P R+T   VL  C+ + DL  GK +H
Sbjct: 67  SQVSWNSLLAAFARDGQFQQAFQIFQRMKLQGLAPDRITFVTVLDGCSAIGDLSRGKLLH 126

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
           G+    G + +  +  +L+ MY +C   +  AR +F++  ++DVV W+S+I  Y Q    
Sbjct: 127 GFVLEAGLERNVMVGTSLIKMYGKCG-CVEDARRVFDKLALQDVVSWTSMIMTYVQHDRC 185

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
            EA++LF RMR   + PN +T    +S+C     ++ G  +H  +++ G   DV +  A+
Sbjct: 186 VEALELFHRMRPSGVLPNRITYATAISACAHVESMADGKLIHSQVLEDGFESDVVVSCAI 245

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ-ESGVEPD 433
           +NMY KCGS+  + ++F  M   + VSW  +++    HG   EAL  F  MQ + G+ PD
Sbjct: 246 VNMYGKCGSLEDAREVFERMPHPNTVSWNAIVAACTQHGCCVEALWYFQRMQLQGGITPD 305

Query: 434 AITVLAILSACNHAGLVKEAETLFNNVMK-EKKIALAIEHYACYVDLLGKSGKIEDACKV 492
            +T + IL+AC+    +   E L   +++      L + +  C + +    G+I++A   
Sbjct: 306 KVTFITILNACSSPATLTFGELLHECILQCGYDTHLIVGN--CIMTMYSSCGRIDNAAAF 363

Query: 493 VSTM 496
            STM
Sbjct: 364 FSTM 367



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 89/286 (31%), Positives = 159/286 (55%), Gaps = 3/286 (1%)

Query: 231 RVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIF 290
           R T   +L  CA+   +  G+ +H       F  D  +  A +HMY +C   +  A  +F
Sbjct: 2   RGTFLALLGLCAKKSAIAEGRFVHSRVEASEFRRDDLVQNATIHMYGKCG-CVEDAVSVF 60

Query: 291 ERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLS 350
           +       V W+S++  +++ G   +A ++F RM+L+ + P+ +T + +L  C+    LS
Sbjct: 61  QSLDHPSQVSWNSLLAAFARDGQFQQAFQIFQRMKLQGLAPDRITFVTVLDGCSAIGDLS 120

Query: 351 HGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYG 410
            G  +H ++++AGL  +V +G +L+ MY KCG +  + ++F+++A +D VSWT++I  Y 
Sbjct: 121 RGKLLHGFVLEAGLERNVMVGTSLIKMYGKCGCVEDARRVFDKLALQDVVSWTSMIMTYV 180

Query: 411 FHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAI 470
            H    EAL+LF  M+ SGV P+ IT    +SAC H   + + + + + V+++   +  +
Sbjct: 181 QHDRCVEALELFHRMRPSGVLPNRITYATAISACAHVESMADGKLIHSQVLEDGFESDVV 240

Query: 471 EHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG 516
              A  V++ GK G +EDA +V   MP  P+T   +++V+AC  HG
Sbjct: 241 VSCA-IVNMYGKCGSLEDAREVFERMP-HPNTVSWNAIVAACTQHG 284


>gi|413923618|gb|AFW63550.1| hypothetical protein ZEAMMB73_399779 [Zea mays]
          Length = 1118

 Score =  291 bits (744), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 160/551 (29%), Positives = 306/551 (55%), Gaps = 13/551 (2%)

Query: 33   VIKACAYAQTHQHFGLQLHCTALKS-GSDADPVISNSLISMYAKFSKPESAYQLFDEMPY 91
            +++AC    +  H G  +H  A++S  +  D  ++ +++ MY++      A   +  +  
Sbjct: 572  LLRACTALPSLTH-GRAVHAAAVRSCTASEDAFVATAIVQMYSRCGDMAGAINAYGMLEK 630

Query: 92   RDTISWNSIINCFTQNGFYVRSLEMF-REMYLCGFVLKAELLAGIISLCSQIGELELGRQ 150
             D +   S++  + QNG    +LE F R +   G ++    L  ++S  +Q+G +  G+ 
Sbjct: 631  PDIVLRTSVVTGYEQNGMAEEALEFFARNVVGQGVLVTPVTLVSVMSAAAQLGHVRKGQA 690

Query: 151  IHALVIVDG-SFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
             HA V+ +  S++L++    A+L  Y K      ++R+FE M  R+ ++W+ MI G +  
Sbjct: 691  CHAYVVRNSLSYDLALV--NAVLGFYVKIGDLQASMRLFEGMTDRDVITWSCMIKGYVQH 748

Query: 210  QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS 269
             +  TG  ++R M +  V+P  VTL  VL ACA + D   GK +H  A   G + +  ++
Sbjct: 749  GDAHTGFRMYREMVKARVQPNSVTLVSVLQACALVVDAEEGKRLHRVAVSIGCELELGVA 808

Query: 270  AALMHMYCECT---EALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRL 326
             AL+ MY +C+   EA+     +F R   KDVV W+++I G +Q+    E++  F  M L
Sbjct: 809  TALVDMYMKCSCHEEAMR----LFHRMPKKDVVAWAAVIGGLTQNELPGESLHSFKCMLL 864

Query: 327  ERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITS 386
                P++VT++ +L++C+        + +H Y+++ G N +  +  AL+++YSKCG + S
Sbjct: 865  NDHVPDAVTMVKVLAACSEFGGNRLAICLHGYLVRNGFNNNAFVAAALLDLYSKCGDLDS 924

Query: 387  SHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH 446
            + ++F     +D V W ++I+GYG HG G+EA+ L+  M  S ++P+ +T L++LSAC+H
Sbjct: 925  AVRVFEGTTEKDIVVWGSMIAGYGAHGLGQEAVALYQRMIASSIQPNNVTFLSVLSACSH 984

Query: 447  AGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILS 506
            +GLV+E   +F+++ +   +    EH +  VDLLG++G++++A +V+  M  +       
Sbjct: 985  SGLVQEGIQIFDSMTQVFGVVPNAEHQSAMVDLLGRAGELQEAIRVIRDMDGRAVAHTWC 1044

Query: 507  SLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566
            +L++ACR H   +++E+ A  L++ +P++   Y LL+ + +    W   ++   +++ + 
Sbjct: 1045 ALLAACRKHNNTKMSEVAAKNLLKLDPDHVGYYNLLTNLYAFDEKWENVKDTRDMVKGRD 1104

Query: 567  LSKSYGFSRIE 577
            L K  G+S +E
Sbjct: 1105 LRKVAGYSSVE 1115



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 179/354 (50%), Gaps = 15/354 (4%)

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
            +HA ++  G    S  ++  +L  Y       +A  +F+++         A++   I +
Sbjct: 492 HLHANILRSGLLHSSHHLTAHVLACYPPG----LARDLFDEIRSPTPRLANALLRAHIRA 547

Query: 210 QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY-CCGFDFDHHL 268
           + +   I L    QR  V+    TL+++L AC  L  L +G+A+H  A   C    D  +
Sbjct: 548 RQWRAAILLG---QRLRVRRDGFTLSLLLRACTALPSLTHGRAVHAAAVRSCTASEDAFV 604

Query: 269 SAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRL-E 327
           + A++ MY  C + +  A   +   +  D+V+ +S++ GY Q+G   EA++ F+R  + +
Sbjct: 605 ATAIVQMYSRCGD-MAGAINAYGMLEKPDIVLRTSVVTGYEQNGMAEEALEFFARNVVGQ 663

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
            +    VTL++++S+  +   +  G   H Y+++  L++D+++ NA++  Y K G + +S
Sbjct: 664 GVLVTPVTLVSVMSAAAQLGHVRKGQACHAYVVRNSLSYDLALVNAVLGFYVKIGDLQAS 723

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHA 447
            ++F  M  RD ++W+ +I GY  HG      +++ EM ++ V+P+++T++++L AC   
Sbjct: 724 MRLFEGMTDRDVITWSCMIKGYVQHGDAHTGFRMYREMVKARVQPNSVTLVSVLQAC--- 780

Query: 448 GLVKEAE--TLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
            LV +AE     + V       L +      VD+  K    E+A ++   MP K
Sbjct: 781 ALVVDAEEGKRLHRVAVSIGCELELGVATALVDMYMKCSCHEEAMRLFHRMPKK 834


>gi|357168001|ref|XP_003581434.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Brachypodium distachyon]
          Length = 757

 Score =  291 bits (744), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 173/559 (30%), Positives = 287/559 (51%), Gaps = 5/559 (0%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           SG   +   L S ++ACA        G Q+H  A+KS + +D ++ N+L++MY+K     
Sbjct: 136 SGTAPDQFALGSTVRACA-ELGDIGVGRQVHAQAMKSENGSDLIVQNALVTMYSKSGLVA 194

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAG-IISLC 139
             + LF  M  +D ISW SII  F Q G  + +L++FREM   G     E   G + S C
Sbjct: 195 DGFLLFGRMREKDPISWGSIIAGFAQQGCEMEALQIFREMVAEGMHHPNEFHFGSVFSAC 254

Query: 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSW 199
             +G LE G QIH+L  V    + + +   +L D+Y++C     A RVF  +   + VSW
Sbjct: 255 GVLGSLEYGEQIHSLS-VKYRLDHNSYAGCSLSDMYARCKKLESAKRVFYGIDAPDLVSW 313

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
            ++I+ C         + L   M+  G++P  +T+  +L AC     +++G+ +H Y   
Sbjct: 314 NSIINACSVEGLLSEAMVLLSEMRGSGLRPDGITVRGLLCACVGCDAIQHGRLMHSYLVK 373

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
            G D D  +  +L+ MY  C +    A  +F  T+ +DVV W+SI+    Q   L    K
Sbjct: 374 LGLDGDVSVCNSLLSMYARCMD-FSSAMDVFHETRDRDVVTWNSILTACVQHQHLEVVFK 432

Query: 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           LF+ ++      + ++L  +LS+     +      VH    K GL  D  + N L++ Y+
Sbjct: 433 LFNLLQRSLPSLDRISLNNVLSASAELGYFEMVKQVHTCTFKVGLVNDTMLSNGLIDTYA 492

Query: 380 KCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
           KCGS+  + ++F  M    D  SW++LI GY   GY  +AL LF  M+  GV P+ +T +
Sbjct: 493 KCGSLDDAVKLFEMMGTNSDVFSWSSLIVGYAQSGYPRKALDLFARMRNLGVRPNHVTFV 552

Query: 439 AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPM 498
            +L+AC+  GLV E    ++ +  E  +    EH +C +DLL ++G++ +A K V  MP 
Sbjct: 553 GVLTACSRVGLVDEGCYYYSIMEPEHGVLPTREHCSCVIDLLARAGRLTEAAKFVDQMPF 612

Query: 499 KPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEV 558
           +P   +  +L++  + H  +E+    A  ++  +P ++A Y LL  + S SG+W     +
Sbjct: 613 EPDIVMWKTLLAGSKTHNDVEMGRRAAEGILNIDPSHSAAYVLLCNIYSASGDWNEFARL 672

Query: 559 WRVMRAKGLSKSYGFSRIE 577
            + MR+ G+ KS G S ++
Sbjct: 673 KKAMRSSGVKKSPGKSWVK 691



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 140/460 (30%), Positives = 228/460 (49%), Gaps = 26/460 (5%)

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           + V++N LI+MY + + PESA  +FDEMP ++ +SW S+I    QN     +L +F  M 
Sbjct: 75  NTVLNNHLITMYGRCAAPESARLVFDEMPAKNPVSWASVIAAHAQNRRSTDALGLFSSML 134

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIV--DGSFELSVFVSTALLDLYSKCH 179
             G       L   +  C+++G++ +GRQ+HA  +   +GS    + V  AL+ +YSK  
Sbjct: 135 RSGTAPDQFALGSTVRACAELGDIGVGRQVHAQAMKSENGS---DLIVQNALVTMYSKSG 191

Query: 180 HWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV-KPTRVTLTIVL 238
                  +F +M  ++ +SW ++I+G          + +FR M  EG+  P       V 
Sbjct: 192 LVADGFLLFGRMREKDPISWGSIIAGFAQQGCEMEALQIFREMVAEGMHHPNEFHFGSVF 251

Query: 239 LACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDV 298
            AC  L  L  G+ IH  +     D + +   +L  MY  C + L  A+ +F      D+
Sbjct: 252 SACGVLGSLEYGEQIHSLSVKYRLDHNSYAGCSLSDMYARCKK-LESAKRVFYGIDAPDL 310

Query: 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCY 358
           V W+SII   S  G LSEAM L S MR   + P+ +T+  +L +C     + HG  +H Y
Sbjct: 311 VSWNSIINACSVEGLLSEAMVLLSEMRGSGLRPDGITVRGLLCACVGCDAIQHGRLMHSY 370

Query: 359 IMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEA 418
           ++K GL+ DVS+ N+L++MY++C   +S+  +F+E   RD V+W ++++    H + E  
Sbjct: 371 LVKLGLDGDVSVCNSLLSMYARCMDFSSAMDVFHETRDRDVVTWNSILTACVQHQHLEVV 430

Query: 419 LQLFLEMQESGVEPDAITVLAILSACNHAG---LVKEAET------LFNNVMKEKKIALA 469
            +LF  +Q S    D I++  +LSA    G   +VK+  T      L N+ M    +   
Sbjct: 431 FKLFNLLQRSLPSLDRISLNNVLSASAELGYFEMVKQVHTCTFKVGLVNDTMLSNGL--- 487

Query: 470 IEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLV 509
                  +D   K G ++DA K+   M         SSL+
Sbjct: 488 -------IDTYAKCGSLDDAVKLFEMMGTNSDVFSWSSLI 520



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 159/309 (51%), Gaps = 4/309 (1%)

Query: 139 CSQIGELELGRQIHA--LVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
           CS++  L LG  +H   L   D +   +  ++  L+ +Y +C     A  VF++M  +N 
Sbjct: 48  CSRLRALCLGCLVHRHLLASPDPNLVRNTVLNNHLITMYGRCAAPESARLVFDEMPAKNP 107

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           VSW ++I+    ++     + LF +M R G  P +  L   + ACAEL D+  G+ +H  
Sbjct: 108 VSWASVIAAHAQNRRSTDALGLFSSMLRSGTAPDQFALGSTVRACAELGDIGVGRQVHAQ 167

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
           A       D  +  AL+ MY + +  +    ++F R + KD + W SII G++Q G   E
Sbjct: 168 AMKSENGSDLIVQNALVTMYSK-SGLVADGFLLFGRMREKDPISWGSIIAGFAQQGCEME 226

Query: 317 AMKLFSRMRLERI-EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           A+++F  M  E +  PN     ++ S+C     L +G  +H   +K  L+ +   G +L 
Sbjct: 227 ALQIFREMVAEGMHHPNEFHFGSVFSACGVLGSLEYGEQIHSLSVKYRLDHNSYAGCSLS 286

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           +MY++C  + S+ ++F  + A D VSW ++I+     G   EA+ L  EM+ SG+ PD I
Sbjct: 287 DMYARCKKLESAKRVFYGIDAPDLVSWNSIINACSVEGLLSEAMVLLSEMRGSGLRPDGI 346

Query: 436 TVLAILSAC 444
           TV  +L AC
Sbjct: 347 TVRGLLCAC 355



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 133/264 (50%), Gaps = 8/264 (3%)

Query: 268 LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
           L+  L+ MY  C  A   AR++F+    K+ V W+S+I  ++Q+   ++A+ LFS M   
Sbjct: 78  LNNHLITMYGRCA-APESARLVFDEMPAKNPVSWASVIAAHAQNRRSTDALGLFSSMLRS 136

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
              P+   L + + +C     +  G  VH   MK+    D+ + NAL+ MYSK G +   
Sbjct: 137 GTAPDQFALGSTVRACAELGDIGVGRQVHAQAMKSENGSDLIVQNALVTMYSKSGLVADG 196

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV-EPDAITVLAILSACNH 446
             +F  M  +D +SW ++I+G+   G   EALQ+F EM   G+  P+     ++ SAC  
Sbjct: 197 FLLFGRMREKDPISWGSIIAGFAQQGCEMEALQIFREMVAEGMHHPNEFHFGSVFSACGV 256

Query: 447 AGLVKEAETLFNNVMKEKKIALAIEHYA-CYV-DLLGKSGKIEDACKVVSTMPMKPSTRI 504
            G ++  E + +  +K +   L    YA C + D+  +  K+E A +V   +   P    
Sbjct: 257 LGSLEYGEQIHSLSVKYR---LDHNSYAGCSLSDMYARCKKLESAKRVFYGID-APDLVS 312

Query: 505 LSSLVSACRIHGRLEVAEMLAHQL 528
            +S+++AC + G L  A +L  ++
Sbjct: 313 WNSIINACSVEGLLSEAMVLLSEM 336


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 168/531 (31%), Positives = 286/531 (53%), Gaps = 3/531 (0%)

Query: 48  LQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQN 107
           LQ+H   ++ G  A  ++ NSL+  Y K    + A QLF EMP +D++S+N +I  +T+ 
Sbjct: 163 LQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITGYTKY 222

Query: 108 GFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFV 167
           GF   +L++F +M    F       A ++ +     ++  G+QIH L I   S+   +FV
Sbjct: 223 GFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAI-KTSYVWDIFV 281

Query: 168 STALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV 227
           + ALLD YSK  +  +A  +F++M   + VS+  +I+G   +  Y+   DLF+ +Q    
Sbjct: 282 ANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKRLQGTSF 341

Query: 228 KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPAR 287
                    +L   A   +L  G+  H  A       +  +  AL+ MY +C E    A 
Sbjct: 342 DRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVGNALVDMYAKC-EKFEDAN 400

Query: 288 IIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQS 347
            IF     ++ V W++II  Y Q G   EA+K+F  M  E +  +  T  + L +    +
Sbjct: 401 RIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENVHGDQATFASTLKASANLA 460

Query: 348 FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLIS 407
            +S G  +H  +++ GL   V  G+ L++MY+ CGS+  + ++F EM  R+ V W  LIS
Sbjct: 461 SVSLGKQLHSSVIRLGLLSSVFSGSVLVDMYANCGSMKDAIEVFKEMPDRNIVCWNALIS 520

Query: 408 GYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIA 467
            Y  +G  E     F +M ESG+ PD+++ L++L+AC+H GLV++A   FN++ +  K+ 
Sbjct: 521 AYSQNGDAEATFSSFADMIESGLYPDSVSFLSVLTACSHRGLVEKALWYFNSMTQVYKLD 580

Query: 468 LAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQ 527
              +HYA  +D+L +SG+  +A  ++S MP +P   + SS++++CRIH   ++A+  A Q
Sbjct: 581 PRRKHYATMIDVLCRSGRFNEAENLISEMPFEPDEVMWSSVLNSCRIHKNQDLAKKAADQ 640

Query: 528 LIEAEP-ENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           L + +   +AA Y  +S + +E+G W  A +V + MR +G+ K   +S +E
Sbjct: 641 LFKMDALRDAAAYVNMSNIYAEAGKWENAAKVKKAMRERGVKKVTAYSWVE 691



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 137/499 (27%), Positives = 224/499 (44%), Gaps = 54/499 (10%)

Query: 6   FYEQTLHLYKQ----ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           F E+ L L+ Q    +  PSG ++  A+L       +       FG Q+H  A+K+    
Sbjct: 224 FREEALKLFMQMRNMDFQPSG-FTFAAML-----GMSVGSEDVIFGQQIHGLAIKTSYVW 277

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D  ++N+L+  Y+K    + A  LFDEMP  D +S+N II  +  NG Y +S ++F+ + 
Sbjct: 278 DIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKRLQ 337

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
              F  K    A ++S+ +    L +GRQ HA  +V  +    V V  AL+D+Y+KC  +
Sbjct: 338 GTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVS-EVQVGNALVDMYAKCEKF 396

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             A R+F  +  RN V WTA+IS  +    ++  + +F+ M RE V   + T    L A 
Sbjct: 397 EDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENVHGDQATFASTLKAS 456

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A L  +  GK +H      G        + L+ MY  C  ++  A  +F+    +++V W
Sbjct: 457 ANLASVSLGKQLHSSVIRLGLLSSVFSGSVLVDMYANCG-SMKDAIEVFKEMPDRNIVCW 515

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           +++I  YSQ+GD       F+ M    + P+SV+ L++L++C+ +  +   L        
Sbjct: 516 NALISAYSQNGDAEATFSSFADMIESGLYPDSVSFLSVLTACSHRGLVEKALWY------ 569

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
                                   S  Q++     R    + T+I      G   EA  L
Sbjct: 570 ----------------------FNSMTQVYKLDPRRK--HYATMIDVLCRSGRFNEAENL 605

Query: 422 FLEMQESGVEPDAITVLAILSAC----NHAGLVKEAETLFNNVMKEKKIALAIEHYACYV 477
             EM     EPD +   ++L++C    N     K A+ LF   M   + A A   Y    
Sbjct: 606 ISEMP---FEPDEVMWSSVLNSCRIHKNQDLAKKAADQLFK--MDALRDAAA---YVNMS 657

Query: 478 DLLGKSGKIEDACKVVSTM 496
           ++  ++GK E+A KV   M
Sbjct: 658 NIYAEAGKWENAAKVKKAM 676



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 130/486 (26%), Positives = 233/486 (47%), Gaps = 7/486 (1%)

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           N ++S Y K      A +LF+ M  R+ +SW  +I  ++QN     +  ++ EM   G  
Sbjct: 81  NMMVSGYVKSRNLFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVK 140

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
                 A ++S       L+   QIH+ +I  G F  S+ V  +L+D Y K     IA +
Sbjct: 141 PDHITFATLLSGFDDTTTLKEVLQIHSHIIRFG-FSASLIVFNSLVDSYCKTCCLDIASQ 199

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           +F +M  ++ VS+  MI+G       +  + LF  M+    +P+  T   +L       D
Sbjct: 200 LFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSED 259

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           +  G+ IHG A    + +D  ++ AL+  Y +  + +  A+ +F+     D V ++ II 
Sbjct: 260 VIFGQQIHGLAIKTSYVWDIFVANALLDFYSK-HDYIDLAKNLFDEMPELDGVSYNIIIT 318

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           GY+ +G   ++  LF R++    +  +     +LS    +  LS G   H   +      
Sbjct: 319 GYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVS 378

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           +V +GNAL++MY+KC     +++IF  +A R+ V WT +IS Y   G+ EEAL++F EM 
Sbjct: 379 EVQVGNALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMN 438

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
              V  D  T  + L A  +   V   + L ++V++   ++ ++   +  VD+    G +
Sbjct: 439 RENVHGDQATFASTLKASANLASVSLGKQLHSSVIRLGLLS-SVFSGSVLVDMYANCGSM 497

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE--PENAANYTLLSM 544
           +DA +V   MP + +    ++L+SA   +G  E        +IE+   P++ +  ++L+ 
Sbjct: 498 KDAIEVFKEMPDR-NIVCWNALISAYSQNGDAEATFSSFADMIESGLYPDSVSFLSVLT- 555

Query: 545 VCSESG 550
            CS  G
Sbjct: 556 ACSHRG 561



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 158/365 (43%), Gaps = 46/365 (12%)

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQ-------------------- 223
           A ++F++M  RN  S   M+SG + S+N     +LF +M                     
Sbjct: 65  ARQLFDEMPYRNTSSVNMMVSGYVKSRNLFRARELFESMFSRNEVSWTIMIGGYSQNNQP 124

Query: 224 -----------REGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAAL 272
                      R GVKP  +T   +L    +   L+    IH +    GF     +  +L
Sbjct: 125 KEAFNLYTEMCRSGVKPDHITFATLLSGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSL 184

Query: 273 MHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPN 332
           +  YC+ T  L  A  +F     KD V ++ +I GY++ G   EA+KLF +MR    +P+
Sbjct: 185 VDSYCK-TCCLDIASQLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPS 243

Query: 333 SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFN 392
             T  A+L        +  G  +H   +K    +D+ + NAL++ YSK   I  +  +F+
Sbjct: 244 GFTFAAMLGMSVGSEDVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFD 303

Query: 393 EMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN-----HA 447
           EM   D VS+  +I+GY ++G  E++  LF  +Q +  +        +LS          
Sbjct: 304 EMPELDGVSYNIIITGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSM 363

Query: 448 GLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK---PSTRI 504
           G    A+ +    + E ++  A+      VD+  K  K EDA ++ + +  +   P T I
Sbjct: 364 GRQTHAQAVVTTAVSEVQVGNAL------VDMYAKCEKFEDANRIFANLAYRNSVPWTAI 417

Query: 505 LSSLV 509
           +S  V
Sbjct: 418 ISIYV 422



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 99/189 (52%), Gaps = 11/189 (5%)

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
           N +++ Y K  ++  + ++F  M +R+ VSWT +I GY  +   +EA  L+ EM  SGV+
Sbjct: 81  NMMVSGYVKSRNLFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVK 140

Query: 432 PDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACK 491
           PD IT   +LS  +    +KE   + +++++    + ++  +   VD   K+  ++ A +
Sbjct: 141 PDHITFATLLSGFDDTTTLKEVLQIHSHIIR-FGFSASLIVFNSLVDSYCKTCCLDIASQ 199

Query: 492 VVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL--IEAEPENAANYTLLSMVCSES 549
           + S MP K S    + +++    +G  E A  L  Q+  ++ +P   + +T  +M+    
Sbjct: 200 LFSEMPTKDSVS-FNVMITGYTKYGFREEALKLFMQMRNMDFQP---SGFTFAAML---- 251

Query: 550 GNWLGAEEV 558
           G  +G+E+V
Sbjct: 252 GMSVGSEDV 260


>gi|15221400|ref|NP_172104.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174948|sp|Q9LND4.1|PPR14_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06140, mitochondrial; Flags: Precursor
 gi|8810476|gb|AAF80137.1|AC024174_19 Contains similarity to a hypothetical protein F24K9.13 gi|6006885
           from Arabidopsis thaliana gb|AC008153 and contains
           multiple PPR PF|01535 repeats [Arabidopsis thaliana]
 gi|332189825|gb|AEE27946.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 558

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 175/544 (32%), Positives = 304/544 (55%), Gaps = 10/544 (1%)

Query: 40  AQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMP--YRDTISW 97
           A+T  H   Q+H   +  G + + V+ +SL + Y + ++ + A   F+ +P   R+  SW
Sbjct: 17  AKTLNHTQ-QVHAKVIIHGFEDEVVLGSSLTNAYIQSNRLDFATSSFNRIPCWKRNRHSW 75

Query: 98  NSIINCFTQNGF--YVRSLEMFREMYL-CGFVLKAELLAGIISLCSQIGELELGRQIHAL 154
           N+I++ ++++    Y   L ++  M   C  V    L+  I + C  +G LE G  IH L
Sbjct: 76  NTILSGYSKSKTCCYSDVLLLYNRMRRHCDGVDSFNLVFAIKA-CVGLGLLENGILIHGL 134

Query: 155 VIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDT 214
            + +G  +   +V+ +L+++Y++      A +VF+++ +RN V W  ++ G +       
Sbjct: 135 AMKNG-LDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVRNSVLWGVLMKGYLKYSKDPE 193

Query: 215 GIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGF-DFDHHLSAALM 273
              LF  M+  G+    +TL  ++ AC  +   + GK +HG +    F D   +L A+++
Sbjct: 194 VFRLFCLMRDTGLALDALTLICLVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQASII 253

Query: 274 HMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNS 333
            MY +C   L  AR +FE +  ++VV+W+++I G+++     EA  LF +M  E I PN 
Sbjct: 254 DMYVKC-RLLDNARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQ 312

Query: 334 VTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNE 393
            TL AIL SC+    L HG  VH Y+++ G+  D     + ++MY++CG+I  +  +F+ 
Sbjct: 313 CTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVFDM 372

Query: 394 MAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEA 453
           M  R+ +SW+++I+ +G +G  EEAL  F +M+   V P+++T +++LSAC+H+G VKE 
Sbjct: 373 MPERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVKEG 432

Query: 454 ETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACR 513
              F ++ ++  +    EHYAC VDLLG++G+I +A   +  MP+KP      +L+SACR
Sbjct: 433 WKQFESMTRDYGVVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASAWGALLSACR 492

Query: 514 IHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGF 573
           IH  +++A  +A +L+  EPE ++ Y LLS + +++G W     V R M  KG  K  G 
Sbjct: 493 IHKEVDLAGEIAEKLLSMEPEKSSVYVLLSNIYADAGMWEMVNCVRRKMGIKGYRKHVGQ 552

Query: 574 SRIE 577
           S  E
Sbjct: 553 SATE 556



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 126/444 (28%), Positives = 220/444 (49%), Gaps = 19/444 (4%)

Query: 7   YEQTLHLY-KQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           Y   L LY +   H  G+ S   +    IKAC      ++ G+ +H  A+K+G D D  +
Sbjct: 90  YSDVLLLYNRMRRHCDGVDSFNLVF--AIKACVGLGLLEN-GILIHGLAMKNGLDKDDYV 146

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL--- 122
           + SL+ MYA+    ESA ++FDE+P R+++ W  ++  + +   Y +  E+FR   L   
Sbjct: 147 APSLVEMYAQLGTMESAQKVFDEIPVRNSVLWGVLMKGYLK---YSKDPEVFRLFCLMRD 203

Query: 123 CGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL 182
            G  L A  L  ++  C  +   ++G+ +H + I     + S ++  +++D+Y KC    
Sbjct: 204 TGLALDALTLICLVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLD 263

Query: 183 IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
            A ++FE  V RN V WT +ISG    +      DLFR M RE + P + TL  +L++C+
Sbjct: 264 NARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCS 323

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
            L  LR+GK++HGY    G + D     + + MY  C   +  AR +F+    ++V+ WS
Sbjct: 324 SLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCGN-IQMARTVFDMMPERNVISWS 382

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG-VHCYIMK 361
           S+I  +  +G   EA+  F +M+ + + PNSVT +++LS+C+    +  G          
Sbjct: 383 SMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRD 442

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS-WTTLISGYGFHGYGEEALQ 420
            G+  +      ++++  + G I  +    + M  +   S W  L+S    H    + + 
Sbjct: 443 YGVVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASAWGALLSACRIH----KEVD 498

Query: 421 LFLEMQES--GVEPDAITVLAILS 442
           L  E+ E    +EP+  +V  +LS
Sbjct: 499 LAGEIAEKLLSMEPEKSSVYVLLS 522



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 121/454 (26%), Positives = 221/454 (48%), Gaps = 17/454 (3%)

Query: 134 GIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI 193
            ++++ SQ   L   +Q+HA VI+ G FE  V + ++L + Y + +    A   F ++  
Sbjct: 9   ALLTILSQAKTLNHTQQVHAKVIIHG-FEDEVVLGSSLTNAYIQSNRLDFATSSFNRIPC 67

Query: 194 --RNEVSWTAMISGCIDSQN--YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
             RN  SW  ++SG   S+   Y   + L+  M+R         L   + AC  L  L N
Sbjct: 68  WKRNRHSWNTILSGYSKSKTCCYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLEN 127

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
           G  IHG A   G D D +++ +L+ MY +    +  A+ +F+   V++ V+W  +++GY 
Sbjct: 128 GILIHGLAMKNGLDKDDYVAPSLVEMYAQLG-TMESAQKVFDEIPVRNSVLWGVLMKGYL 186

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVH-CYIMKAGLNFDV 368
           +     E  +LF  MR   +  +++TL+ ++ +C        G  VH   I ++ ++   
Sbjct: 187 KYSKDPEVFRLFCLMRDTGLALDALTLICLVKACGNVFAGKVGKCVHGVSIRRSFIDQSD 246

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
            +  ++++MY KC  + ++ ++F     R+ V WTTLISG+       EA  LF +M   
Sbjct: 247 YLQASIIDMYVKCRLLDNARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRE 306

Query: 429 GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIED 488
            + P+  T+ AIL +C+  G ++  +++ +  M    I +   ++  ++D+  + G I+ 
Sbjct: 307 SILPNQCTLAAILVSCSSLGSLRHGKSV-HGYMIRNGIEMDAVNFTSFIDMYARCGNIQM 365

Query: 489 ACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE--PENAANYTLLSMVC 546
           A  V   MP +      SS+++A  I+G  E A    H++      P +    +LLS  C
Sbjct: 366 ARTVFDMMPERNVIS-WSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLS-AC 423

Query: 547 SESGNWLGAEEVWRVMRAKGLSKSYGFSRIENEY 580
           S SGN    +E W+  + + +++ YG    E  Y
Sbjct: 424 SHSGN---VKEGWK--QFESMTRDYGVVPEEEHY 452


>gi|357114751|ref|XP_003559158.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 695

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 174/543 (32%), Positives = 278/543 (51%), Gaps = 22/543 (4%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G Q+H  A+++G   D  + +SL+ +Y++     +A  +FD M   D + + S+++ F +
Sbjct: 112 GEQVHSLAVRAGFAGDSWVGSSLVELYSRCGDLGAAKGVFDRMESPDVVGYTSLVSAFCR 171

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVI-VDGSFELSV 165
           +G +  +++   +M   G       +A I+  C       LG Q+HA +I   G    S+
Sbjct: 172 SGEFELAVDTLHQMLRQGVEPNEHTMASILGSCC---PFVLGEQVHAYMIKAMGLHSQSM 228

Query: 166 FVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
           + S+AL+D YS+   + +A  VF  +  +N V+W +M+   I     +  + +F  M  E
Sbjct: 229 YASSALIDFYSRNSEFDMAKAVFNNLHCKNVVTWCSMMQLHIRDGRPEDALQVFDDMISE 288

Query: 226 GV-KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMY---CECTE 281
           GV +P     +I L AC  +     G+ +H  A       D  +S AL+ MY   C   E
Sbjct: 289 GVVEPNEFAFSIALGACGSIA---LGRQLHSSAIKRNLTSDLRVSNALLSMYGRICHVQE 345

Query: 282 ALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILS 341
                  + +  +  D+V W++ I    Q+G   +A+ L S +    + PN     + LS
Sbjct: 346 L----EAVLKDIENPDIVSWTTAISANFQNGFSEKAIALLSMLHSRGLMPNDYAFSSALS 401

Query: 342 SCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS 401
           SC   + L  G   HC  +K G +  +  GNAL+N+YSKCG I  +   F+ M  RD  S
Sbjct: 402 SCADLALLDQGRQFHCLALKLGCDLKICTGNALINLYSKCGQIAPAKLAFDVMDHRDVTS 461

Query: 402 WTTLISGYGFHGYGEEALQLFLEMQE-SGVEPDAITVLAILSACNHAGLVKEAETLFNNV 460
           W +LI GY  HG    ALQ+F EM+   G EPD  + L +L+ACNHAG+V E   LF  +
Sbjct: 462 WNSLIHGYAQHGDASMALQVFGEMRSIRGTEPDESSFLGVLAACNHAGMVNEGVALFRAI 521

Query: 461 MKEKK--IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRL 518
               +     +  HYAC VD++G+SG+ +DA ++V  MP +P   I  +L+++CR+HG L
Sbjct: 522 ASHSQHGATPSPSHYACVVDMMGRSGRFDDALRLVEEMPFRPGALIWKTLLASCRLHGNL 581

Query: 519 EVAEMLAHQLIE----AEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFS 574
           E  E+ A +L+E     E  ++A+Y L+S + +  G W  A  V R M   G+ K  G S
Sbjct: 582 ETGELAAERLMELSEGGEDRDSASYVLMSGIHAMRGEWRDAYRVRRRMDEAGVRKEAGCS 641

Query: 575 RIE 577
            +E
Sbjct: 642 WVE 644



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 114/443 (25%), Positives = 205/443 (46%), Gaps = 13/443 (2%)

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A  LFD MP ++ ++W S ++  T+NG    ++  F +M   G           ++ C+ 
Sbjct: 46  ALDLFDRMPRKNIVAWTSAVSGLTRNGRPEAAMAAFADMVASGVAPNDFAFNAALAACAD 105

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
              L  G Q+H+L +  G F    +V ++L++LYS+C     A  VF++M   + V +T+
Sbjct: 106 ASALRAGEQVHSLAVRAG-FAGDSWVGSSLVELYSRCGDLGAAKGVFDRMESPDVVGYTS 164

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY-CC 260
           ++S    S  ++  +D    M R+GV+P   T+  +L +C        G+ +H Y     
Sbjct: 165 LVSAFCRSGEFELAVDTLHQMLRQGVEPNEHTMASILGSCCP---FVLGEQVHAYMIKAM 221

Query: 261 GFDFDH-HLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
           G      + S+AL+  Y   +E    A+ +F     K+VV W S+++ + + G   +A++
Sbjct: 222 GLHSQSMYASSALIDFYSRNSE-FDMAKAVFNNLHCKNVVTWCSMMQLHIRDGRPEDALQ 280

Query: 320 LFSRMRLER-IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMY 378
           +F  M  E  +EPN       L +C     ++ G  +H   +K  L  D+ + NAL++MY
Sbjct: 281 VFDDMISEGVVEPNEFAFSIALGACGS---IALGRQLHSSAIKRNLTSDLRVSNALLSMY 337

Query: 379 SKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
            +   +     +  ++   D VSWTT IS    +G+ E+A+ L   +   G+ P+     
Sbjct: 338 GRICHVQELEAVLKDIENPDIVSWTTAISANFQNGFSEKAIALLSMLHSRGLMPNDYAFS 397

Query: 439 AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPM 498
           + LS+C    L+ +    F+ +  +    L I      ++L  K G+I  A      M  
Sbjct: 398 SALSSCADLALLDQGRQ-FHCLALKLGCDLKICTGNALINLYSKCGQIAPAKLAFDVMDH 456

Query: 499 KPSTRILSSLVSACRIHGRLEVA 521
           +  T   +SL+     HG   +A
Sbjct: 457 RDVTS-WNSLIHGYAQHGDASMA 478



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 90/163 (55%)

Query: 282 ALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILS 341
           +L  A  +F+R   K++V W+S + G +++G    AM  F+ M    + PN     A L+
Sbjct: 42  SLGDALDLFDRMPRKNIVAWTSAVSGLTRNGRPEAAMAAFADMVASGVAPNDFAFNAALA 101

Query: 342 SCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS 401
           +C   S L  G  VH   ++AG   D  +G++L+ +YS+CG + ++  +F+ M + D V 
Sbjct: 102 ACADASALRAGEQVHSLAVRAGFAGDSWVGSSLVELYSRCGDLGAAKGVFDRMESPDVVG 161

Query: 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
           +T+L+S +   G  E A+    +M   GVEP+  T+ +IL +C
Sbjct: 162 YTSLVSAFCRSGEFELAVDTLHQMLRQGVEPNEHTMASILGSC 204



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 81/172 (47%), Gaps = 10/172 (5%)

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           K GS+  +  +F+ M  ++ V+WT+ +SG   +G  E A+  F +M  SGV P+     A
Sbjct: 39  KSGSLGDALDLFDRMPRKNIVAWTSAVSGLTRNGRPEAAMAAFADMVASGVAPNDFAFNA 98

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDACKVVSTMP 497
            L+AC  A  ++  E + +  +   +   A + +  +  V+L  + G +  A  V   M 
Sbjct: 99  ALAACADASALRAGEQVHSLAV---RAGFAGDSWVGSSLVELYSRCGDLGAAKGVFDRME 155

Query: 498 MKPSTRILSSLVSA-CRIHGRLEVAEMLAHQLIE--AEPENAANYTLLSMVC 546
             P     +SLVSA CR  G  E+A    HQ++    EP      ++L   C
Sbjct: 156 -SPDVVGYTSLVSAFCR-SGEFELAVDTLHQMLRQGVEPNEHTMASILGSCC 205


>gi|255559100|ref|XP_002520572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540232|gb|EEF41805.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 695

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 184/573 (32%), Positives = 319/573 (55%), Gaps = 17/573 (2%)

Query: 13  LYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD--ADPVISNSLI 70
           + K  + PS + S   + P++     +   +  +G+      LK G++   D  + +S I
Sbjct: 91  MMKWGIKPSPV-SFVNVFPAISSVGDFKNANVLYGM-----LLKLGNEYANDLFVVSSAI 144

Query: 71  SMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMF-REMYLCGFVLKA 129
           SMYA+    +   ++FD    +    WN++I    QN  ++  + +F + M     +L  
Sbjct: 145 SMYAELGCLDLCRKVFDSCLEKSAEVWNTMIGGHIQNNSFLEGVYLFLQAMKTEHTILDD 204

Query: 130 ELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
                 ++  SQ+  L LG+Q+HA  + + +  LSV V  A+L +YS+C+    +  VFE
Sbjct: 205 VTFLSALTAVSQLQCLGLGQQMHAFTMKNHTV-LSVTVLNAILVMYSRCNSVQTSFEVFE 263

Query: 190 QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
           +M  ++ VSW  MISG I +   + G+ L   MQ++G     VT+T +L A + LR+   
Sbjct: 264 KMPEKDVVSWNTMISGFIQNGLDEEGLMLVYEMQKQGFIADSVTVTSLLSAASNLRNREI 323

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV--KDVVIWSSIIRG 307
           GK  H Y    G  FD  + + L+ MY + +  +  ++ +FE   +  +D   W+++I G
Sbjct: 324 GKQTHAYLIRHGIKFDG-MDSYLIDMYAK-SGLIRISQRVFENNNIQNRDQATWNAVIAG 381

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
           Y+Q+G + +A   F  M  + + PN+VTL +IL +C+    ++ G  +H   ++  L+ +
Sbjct: 382 YTQNGLVEQAFITFRLMLEQNLRPNAVTLASILPACSSLGSINLGKQLHGVSIRYSLDQN 441

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
           + +  AL++MYSK G+I  +  +F + + R+ V++TT+I GYG HG GE AL LF  M++
Sbjct: 442 IFVRTALVDMYSKSGAINYAESVFTQSSERNSVTYTTMILGYGQHGMGENALSLFHSMKK 501

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487
           SG++PDAIT +A+LSAC++AGLV E   +F ++ ++ KI  +  HY C  D+LG+ G++ 
Sbjct: 502 SGIQPDAITFVAVLSACSYAGLVDEGLRIFESMKRDFKIQPSTAHYCCVADMLGRVGRVI 561

Query: 488 DACKVVSTMPMKPST-RILSSLVSACRIHGRLEVAEMLAHQLIEAEP-ENAANY-TLLSM 544
           +A + V  +  +     I  SL+ ACR+HG +E+ E ++++L+E    +  A Y  LLS 
Sbjct: 562 EAYEFVKQLGEEGHVIEIWGSLLGACRLHGHIELGEEVSNRLLEMNSVDRLAGYQVLLSN 621

Query: 545 VCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           + +E  NW   +++ + MR KGL K  G S I+
Sbjct: 622 MYAEEANWETVDKLRKSMREKGLRKEVGCSWID 654



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 122/474 (25%), Positives = 235/474 (49%), Gaps = 11/474 (2%)

Query: 83  YQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQI 142
           +++F  M  RD I+WN++++ + +   YV ++  FR M   G          +    S +
Sbjct: 54  HKVFKTMHKRDVIAWNTMVSWYVKTERYVEAIRQFRLMMKWGIKPSPVSFVNVFPAISSV 113

Query: 143 GELELGRQIHALVIVDGS-FELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
           G+ +    ++ +++  G+ +   +FV ++ + +Y++     +  +VF+  + ++   W  
Sbjct: 114 GDFKNANVLYGMLLKLGNEYANDLFVVSSAISMYAELGCLDLCRKVFDSCLEKSAEVWNT 173

Query: 202 MISGCIDSQNYDTGIDLF-RAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
           MI G I + ++  G+ LF +AM+ E      VT    L A ++L+ L  G+ +H +    
Sbjct: 174 MIGGHIQNNSFLEGVYLFLQAMKTEHTILDDVTFLSALTAVSQLQCLGLGQQMHAFTMKN 233

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
                  +  A++ MY  C  ++  +  +FE+   KDVV W+++I G+ Q+G   E + L
Sbjct: 234 HTVLSVTVLNAILVMYSRCN-SVQTSFEVFEKMPEKDVVSWNTMISGFIQNGLDEEGLML 292

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
              M+ +    +SVT+ ++LS+ +       G   H Y+++ G+ FD  + + L++MY+K
Sbjct: 293 VYEMQKQGFIADSVTVTSLLSAASNLRNREIGKQTHAYLIRHGIKFD-GMDSYLIDMYAK 351

Query: 381 CGSITSSHQIF--NEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
            G I  S ++F  N +  RD  +W  +I+GY  +G  E+A   F  M E  + P+A+T+ 
Sbjct: 352 SGLIRISQRVFENNNIQNRDQATWNAVIAGYTQNGLVEQAFITFRLMLEQNLRPNAVTLA 411

Query: 439 AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPM 498
           +IL AC+  G +   + L + V     +   I      VD+  KSG I  A + V T   
Sbjct: 412 SILPACSSLGSINLGKQL-HGVSIRYSLDQNIFVRTALVDMYSKSGAINYA-ESVFTQSS 469

Query: 499 KPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLSMVCSESG 550
           + ++   ++++     HG  E A  L H + ++  +P+      +LS  CS +G
Sbjct: 470 ERNSVTYTTMILGYGQHGMGENALSLFHSMKKSGIQPDAITFVAVLS-ACSYAG 522


>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
           [Vitis vinifera]
          Length = 788

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 185/564 (32%), Positives = 289/564 (51%), Gaps = 52/564 (9%)

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM- 120
           +PV  N++++ YAK  + + A +LFD MP +D +SWNS++  +T+NG     L+ F EM 
Sbjct: 139 NPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMA 198

Query: 121 ---------YLCGFVLKAEL---------------LAGIISLCSQIGELELGRQIHALVI 156
                     + GFV   +L               ++ +  LC   G    G+   A  +
Sbjct: 199 ERDVVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLC---GFARFGKIAEARRL 255

Query: 157 VDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGI 216
            D     +V    A++  Y +  H   A+ +F +M  +N +SWT +I+G +     D   
Sbjct: 256 FDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEAR 315

Query: 217 DLFRAMQREGV-----------KPTRVTLTIVLLACAELRDLR-NGKAIHGYAYCCGFDF 264
            L   M    V           +  R+     +     +RD+      I GY+ C   D 
Sbjct: 316 QLLNQMPYRNVAAQTAMISGYVQNKRMDDARQIFNQISIRDVVCWNTMIAGYSQCGRMDE 375

Query: 265 DHHLSAALMHM-----------YCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGD 313
             HL   ++             Y +  + +  A  IFE  K K++V W+S+I G +Q+G 
Sbjct: 376 ALHLFKQMVKKDIVSWNTMVASYAQVGQ-MDAAIKIFEEMKEKNIVSWNSLISGLTQNGS 434

Query: 314 LSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNA 373
             +A+K F  M  E  +P+  T    LSSC   + L  G  +H  +MK+G   D+ + NA
Sbjct: 435 YLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNA 494

Query: 374 LMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPD 433
           L+ MY+KCGSI+S+  +F ++   D VSW +LI+ Y  +G G EAL+LF +M+  GV PD
Sbjct: 495 LITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPD 554

Query: 434 AITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVV 493
            +T + ILSAC+H GL+ +   LF  +++   I    EHYAC VDLLG++G++E+A ++V
Sbjct: 555 EVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLV 614

Query: 494 STMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWL 553
             M +  +  I  +L+ ACRIHG LE+A+  A +L+E EP   +NY LLS + +E+G W 
Sbjct: 615 RGMKINANAGIWGALLGACRIHGNLELAKFAAEKLLEFEPHKTSNYVLLSNMQAEAGRWD 674

Query: 554 GAEEVWRVMRAKGLSKSYGFSRIE 577
               V R+M+ KG  K  G+S IE
Sbjct: 675 EVARVRRLMKEKGAEKQPGWSWIE 698



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 123/484 (25%), Positives = 220/484 (45%), Gaps = 64/484 (13%)

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           + V  NS+IS +AK  +   A QLFD MP R+ +SWNS+I  +  N     + ++F +M 
Sbjct: 45  NTVTHNSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEARQLFDKMP 104

Query: 122 ---LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKC 178
              L  + L       +I+  ++ GEL   R +  L+     ++ +     A++  Y+K 
Sbjct: 105 TRDLYSWTL-------MITCYTRNGELAKARNLFNLL----PYKWNPVCCNAMVAGYAKN 153

Query: 179 HHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVL 238
             +  A R+F+ M  ++ VSW +M++G   +     G+  F  M    V    V+  +++
Sbjct: 154 RQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDV----VSWNLMV 209

Query: 239 LACAELRDLR----------NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
               E+ DL           N   +      CGF             + +  E    AR 
Sbjct: 210 DGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGF-----------ARFGKIAE----ARR 254

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
           +F++  +++VV W+++I  Y Q+  + EA+ LF    +E  E NS++   +++   R   
Sbjct: 255 LFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLF----MEMPEKNSISWTTVINGYVRMGK 310

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
           L         ++      +V+   A+++ Y +   +  + QIFN+++ RD V W T+I+G
Sbjct: 311 LDEAR----QLLNQMPYRNVAAQTAMISGYVQNKRMDDARQIFNQISIRDVVCWNTMIAG 366

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468
           Y   G  +EAL LF +M    V+ D ++   ++++    G +  A  +F   MKEK I  
Sbjct: 367 YSQCGRMDEALHLFKQM----VKKDIVSWNTMVASYAQVGQMDAAIKIFEE-MKEKNIV- 420

Query: 469 AIEHYACYVDLLGKSGKIEDACKVVSTM---PMKPSTRILSSLVSACRIHGRLEVAEMLA 525
               +   +  L ++G   DA K    M     KP     +  +S+C     L+V + L 
Sbjct: 421 ---SWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQL- 476

Query: 526 HQLI 529
           HQL+
Sbjct: 477 HQLV 480



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 86/174 (49%), Gaps = 2/174 (1%)

Query: 34  IKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRD 93
           + +CA+    Q  G QLH   +KSG   D  +SN+LI+MYAK     SA  LF ++ + D
Sbjct: 461 LSSCAHLAALQ-VGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFD 519

Query: 94  TISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHA 153
            +SWNS+I  +  NG    +L++F +M + G         GI+S CS +G ++ G ++  
Sbjct: 520 VVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFK 579

Query: 154 LVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR-NEVSWTAMISGC 206
            ++   + E        ++DL  +      A ++   M I  N   W A++  C
Sbjct: 580 CMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGAC 633



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 70/316 (22%), Positives = 127/316 (40%), Gaps = 61/316 (19%)

Query: 264 FDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSR 323
           F H+L    +    +  EA+     +F+    K+ V  +S+I  ++++G +S+A +LF  
Sbjct: 16  FRHNLKITQLGKSGQIDEAIK----VFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDG 71

Query: 324 MRLERIEPNSVTLLAILSSC----TRQSF--------LSHGLGVHCYIMKAGL------- 364
           M    I   +  + A L +      RQ F         S  L + CY     L       
Sbjct: 72  MPQRNIVSWNSMIAAYLHNDRVEEARQLFDKMPTRDLYSWTLMITCYTRNGELAKARNLF 131

Query: 365 -----NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEAL 419
                 ++    NA++  Y+K      + ++F+ M A+D VSW ++++GY  +G     L
Sbjct: 132 NLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGL 191

Query: 420 QLFLEMQESGV---------------------------EPDAITVLAILSACNHAGLVKE 452
           Q F EM E  V                            P+ ++ + +L      G + E
Sbjct: 192 QFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAE 251

Query: 453 AETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSAC 512
           A  LF+  M  + +       A YV    ++  +++A  +   MP K S    + +    
Sbjct: 252 ARRLFDQ-MPIRNVVAWNAMIAAYV----QNCHVDEAISLFMEMPEKNSISWTTVINGYV 306

Query: 513 RIHGRLEVAEMLAHQL 528
           R+ G+L+ A  L +Q+
Sbjct: 307 RM-GKLDEARQLLNQM 321


>gi|297801640|ref|XP_002868704.1| EMB2744 [Arabidopsis lyrata subsp. lyrata]
 gi|297314540|gb|EFH44963.1| EMB2744 [Arabidopsis lyrata subsp. lyrata]
          Length = 710

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 171/552 (30%), Positives = 285/552 (51%), Gaps = 9/552 (1%)

Query: 30  LPSVIKACA---YAQTHQHFGLQLHCTALKSGSDADPVIS-NSLISMYAKFSKPESAYQL 85
           L  ++K CA   Y +T +   +  H       S A  V   NSLI++Y K  +   A ++
Sbjct: 34  LNELLKVCANSSYLRTGE--SIHGHLIVTNQSSRAKDVYQINSLINLYVKCGETVRARKV 91

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII-SLCSQIGE 144
           FD MP R+ +SW +++  +  +GF    L++F+ M         E +A ++   CS  G 
Sbjct: 92  FDLMPERNVVSWCAMMKGYQNSGFDFEVLKLFKSMVFSDESRPNEFVATVVFKSCSSSGR 151

Query: 145 LELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMIS 204
           +E G+Q H   +  G      FV   L+ +YS C     A+RV + +   +   +++ +S
Sbjct: 152 IEEGKQFHGCFLKSGLMSHE-FVRNTLVYMYSLCSGNGEAIRVLDDLPYCDLSVFSSALS 210

Query: 205 GCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDF 264
           G ++   +  G ++ R M +E +    +T    L  C+ LRDL   + IH      GF+ 
Sbjct: 211 GYLECGAFKEGAEVLRRMAKEDLVLDNITYLSCLRLCSNLRDLNLARQIHSRMVRLGFNS 270

Query: 265 DHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM 324
           +   S A+++MY +C + L+  R+ F+ T  +++V+ ++I+  Y Q     EA+ LFS+M
Sbjct: 271 EVEASGAIINMYGKCGKVLYAQRV-FDNTHAQNIVLNTTIMDAYFQDKSFEEALNLFSKM 329

Query: 325 RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSI 384
             + + PN  T    L+S    S L HG  +H  ++K+G    V +GNAL+NMY+K GSI
Sbjct: 330 DTKEVPPNEYTFAISLNSIAELSLLKHGDLLHGLVLKSGYRNHVMVGNALVNMYAKSGSI 389

Query: 385 TSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
             + + F+ M  RD V+W T+I G+  HG G E L+ F  M  +G  P+ IT + +L AC
Sbjct: 390 EDARKAFSGMTFRDIVTWNTMICGFSHHGLGREGLEAFDRMMIAGEIPNRITFIGVLQAC 449

Query: 445 NHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRI 504
           +H G V++    FN +MK+  +   ++HY C V LL K+G  +DA   + T P++     
Sbjct: 450 SHVGFVEQGLYYFNQLMKKFNVQPDLQHYTCIVGLLSKAGMFKDAEDFMRTAPIEWDVVA 509

Query: 505 LSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRA 564
             +L++AC +     + + +A   I   P ++  Y LLS + ++S  W G  EV  +M  
Sbjct: 510 WRALLNACYVRRNFRLGKKVAEYAIYKYPNDSGVYVLLSNIHAKSREWEGVAEVRSLMNK 569

Query: 565 KGLSKSYGFSRI 576
           +G+ K  G S I
Sbjct: 570 RGVKKEPGVSWI 581


>gi|77552605|gb|ABA95402.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 1000

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 178/561 (31%), Positives = 297/561 (52%), Gaps = 6/561 (1%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           GL  +   L S++  CA +    H G  +H   L+S  D+   + N+L++MY+   K   
Sbjct: 241 GLRPDATTLCSLMSVCASSDHFSH-GSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSD 299

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A  LF  M  RD ISWN++I+ + QN     +L+   +++           +  +  CS 
Sbjct: 300 AEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSS 359

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
            G L  G+ +HA+V+   S + ++ V  +L+ +Y KC+    A +VF+ M   + VS+  
Sbjct: 360 PGALIDGKMVHAIVL-QLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNV 418

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN-GKAIHGYAYCC 260
           +I G    ++    + +F  M+  G+KP  +T+  +  + A   DL N G+ +H Y    
Sbjct: 419 LIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINIHGSFASSNDLHNYGRPLHAYIIRT 478

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
           GF  D +++ +L+ MY +C   L  +  IF     K++V W++II    Q G   EA+KL
Sbjct: 479 GFLSDEYVANSLITMYAKCGN-LESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEALKL 537

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
           F  M+    + + V L   LSSC   + L  G+ +H   MK+GL+ D  + NA M+MY K
Sbjct: 538 FIDMQHAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGK 597

Query: 381 CGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
           CG +    Q+  + A R    W TLISGY  +GY +EA + F +M  +G +PD +T +A+
Sbjct: 598 CGKMDEMLQVVPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVATGRKPDYVTFVAL 657

Query: 441 LSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKP 500
           LSAC+HAGLV +    +N++     ++  I+H  C VDLLG+ G+  +A K +  MP+ P
Sbjct: 658 LSACSHAGLVDKGIDYYNSMASSFGVSPGIKHCVCIVDLLGRLGRFAEAEKFIEEMPVLP 717

Query: 501 STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWR 560
           +  I  SL+S+ R H  LE+    A +L+E +P + + Y LLS + + +  W   +++  
Sbjct: 718 NDLIWRSLLSSSRTHKNLEIGRKTAKKLLELDPFDDSAYVLLSNLYATNARWADVDKLRS 777

Query: 561 VMRAKGLSKSYGFS--RIENE 579
            M+   ++K    S  +++NE
Sbjct: 778 HMKTININKRPACSWLKLKNE 798



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 159/555 (28%), Positives = 278/555 (50%), Gaps = 14/555 (2%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           + S  + E+ L  Y+Q +   G+  N     +V+  C   + ++  GLQ+    + SG  
Sbjct: 120 LSSNGYLEEALRAYRQ-MRRDGVPCNANAFATVVSLCGSLE-NEVPGLQVASQVIVSGLQ 177

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
               ++NSLI+M+    +   A +LFD M   DTISWN++I+ ++  G   +   +F +M
Sbjct: 178 NQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDM 237

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
              G    A  L  ++S+C+       G  IH+L +   S + SV V  AL+++YS    
Sbjct: 238 RHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCL-RSSLDSSVTVINALVNMYSAAGK 296

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
              A  +F  M  R+ +SW  MIS  + + N    +     +      P  +T +  L A
Sbjct: 297 LSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGA 356

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
           C+    L +GK +H          +  +  +L+ MY +C  ++  A  +F+     D+V 
Sbjct: 357 CSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCN-SMEDAEKVFQSMPTHDIVS 415

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFL-SHGLGVHCYI 359
           ++ +I GY+   D ++AM++FS MR   I+PN +T++ I  S    + L ++G  +H YI
Sbjct: 416 YNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINIHGSFASSNDLHNYGRPLHAYI 475

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEAL 419
           ++ G   D  + N+L+ MY+KCG++ SS  IFN +  ++ VSW  +I+     G+GEEAL
Sbjct: 476 IRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEAL 535

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYA--CYV 477
           +LF++MQ +G + D + +   LS+C     ++E   L    MK     L  + Y     +
Sbjct: 536 KLFIDMQHAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKS---GLDSDSYVVNAAM 592

Query: 478 DLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPEN 535
           D+ GK GK+++  +VV    ++P  +  ++L+S    +G  + AE    Q++    +P+ 
Sbjct: 593 DMYGKCGKMDEMLQVVPDQAIRPQ-QCWNTLISGYAKYGYFKEAEETFKQMVATGRKPDY 651

Query: 536 AANYTLLSMVCSESG 550
                LLS  CS +G
Sbjct: 652 VTFVALLS-ACSHAG 665



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/413 (26%), Positives = 201/413 (48%), Gaps = 4/413 (0%)

Query: 30  LPSVIKACAYAQTHQHF--GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFD 87
           L S++ AC      +    G  +H    ++G   +  I  +L+ +Y        A +LF 
Sbjct: 44  LASLVTACERRGRDEGIACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFW 103

Query: 88  EMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELEL 147
           EMP R+ +SW +++   + NG+   +L  +R+M   G    A   A ++SLC  +     
Sbjct: 104 EMPERNVVSWTALMVALSSNGYLEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVP 163

Query: 148 GRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCI 207
           G Q+ + VIV G  +  V V+ +L+ ++        A ++F++M   + +SW AMIS   
Sbjct: 164 GLQVASQVIVSG-LQNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYS 222

Query: 208 DSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
                     +F  M+  G++P   TL  ++  CA      +G  IH        D    
Sbjct: 223 HQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVT 282

Query: 268 LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
           +  AL++MY    + L  A  +F     +D++ W+++I  Y Q+ + ++A+K   ++   
Sbjct: 283 VINALVNMYSAAGK-LSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHT 341

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
              PN +T  + L +C+    L  G  VH  +++  L  ++ +GN+L+ MY KC S+  +
Sbjct: 342 NESPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDA 401

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
            ++F  M   D VS+  LI GY     G +A+Q+F  M+ +G++P+ IT++ I
Sbjct: 402 EKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINI 454



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 114/415 (27%), Positives = 200/415 (48%), Gaps = 12/415 (2%)

Query: 89  MPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELE-- 146
           M  R   +W + ++   + G    + EM R M   G  L    LA +++ C + G  E  
Sbjct: 1   MADRTPSTWYTAVSGCVRCGRDGTAFEMLRGMRERGVPLSGFALASLVTACERRGRDEGI 60

Query: 147 -LGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISG 205
             G  IHAL    G    +V++ TALL LY        A R+F +M  RN VSWTA++  
Sbjct: 61  ACGAAIHALTHRAGLMG-NVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVA 119

Query: 206 CIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFD 265
              +   +  +  +R M+R+GV         V+  C  L +   G  +       G    
Sbjct: 120 LSSNGYLEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQ 179

Query: 266 HHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR 325
             ++ +L+ M+      +H A  +F+R +  D + W+++I  YS  G  S+   +FS MR
Sbjct: 180 VSVANSLITMFGNLGR-VHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMR 238

Query: 326 LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSIT 385
              + P++ TL +++S C      SHG G+H   +++ L+  V++ NAL+NMYS  G ++
Sbjct: 239 HHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLS 298

Query: 386 SSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
            +  +F  M+ RD +SW T+IS Y  +    +AL+   ++  +   P+ +T  + L AC+
Sbjct: 299 DAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACS 358

Query: 446 HAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
             G + + + +   V++   ++ + +        + + GK   +EDA KV  +MP
Sbjct: 359 SPGALIDGKMVHAIVLQLSLQRNLLVG----NSLITMYGKCNSMEDAEKVFQSMP 409


>gi|222616424|gb|EEE52556.1| hypothetical protein OsJ_34807 [Oryza sativa Japonica Group]
          Length = 1215

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 178/561 (31%), Positives = 297/561 (52%), Gaps = 6/561 (1%)

Query: 22   GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
            GL  +   L S++  CA +    H G  +H   L+S  D+   + N+L++MY+   K   
Sbjct: 543  GLRPDATTLCSLMSVCASSDHFSH-GSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSD 601

Query: 82   AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
            A  LF  M  RD ISWN++I+ + QN     +L+   +++           +  +  CS 
Sbjct: 602  AEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSS 661

Query: 142  IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
             G L  G+ +HA+V+   S + ++ V  +L+ +Y KC+    A +VF+ M   + VS+  
Sbjct: 662  PGALIDGKMVHAIVL-QLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNV 720

Query: 202  MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN-GKAIHGYAYCC 260
            +I G    ++    + +F  M+  G+KP  +T+  +  + A   DL N G+ +H Y    
Sbjct: 721  LIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINIHGSFASSNDLHNYGRPLHAYIIRT 780

Query: 261  GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
            GF  D +++ +L+ MY +C   L  +  IF     K++V W++II    Q G   EA+KL
Sbjct: 781  GFLSDEYVANSLITMYAKCGN-LESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEALKL 839

Query: 321  FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
            F  M+    + + V L   LSSC   + L  G+ +H   MK+GL+ D  + NA M+MY K
Sbjct: 840  FIDMQHAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGK 899

Query: 381  CGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
            CG +    Q+  + A R    W TLISGY  +GY +EA + F +M  +G +PD +T +A+
Sbjct: 900  CGKMDEMLQVVPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVATGRKPDYVTFVAL 959

Query: 441  LSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKP 500
            LSAC+HAGLV +    +N++     ++  I+H  C VDLLG+ G+  +A K +  MP+ P
Sbjct: 960  LSACSHAGLVDKGIDYYNSMASSFGVSPGIKHCVCIVDLLGRLGRFAEAEKFIEEMPVLP 1019

Query: 501  STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWR 560
            +  I  SL+S+ R H  LE+    A +L+E +P + + Y LLS + + +  W   +++  
Sbjct: 1020 NDLIWRSLLSSSRTHKNLEIGRKTAKKLLELDPFDDSAYVLLSNLYATNARWADVDKLRS 1079

Query: 561  VMRAKGLSKSYGFS--RIENE 579
             M+   ++K    S  +++NE
Sbjct: 1080 HMKTININKRPACSWLKLKNE 1100



 Score =  229 bits (584), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 159/555 (28%), Positives = 278/555 (50%), Gaps = 14/555 (2%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           + S  + E+ L  Y+Q +   G+  N     +V+  C   + ++  GLQ+    + SG  
Sbjct: 422 LSSNGYLEEALRAYRQ-MRRDGVPCNANAFATVVSLCGSLE-NEVPGLQVASQVIVSGLQ 479

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
               ++NSLI+M+    +   A +LFD M   DTISWN++I+ ++  G   +   +F +M
Sbjct: 480 NQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDM 539

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
              G    A  L  ++S+C+       G  IH+L +   S + SV V  AL+++YS    
Sbjct: 540 RHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCL-RSSLDSSVTVINALVNMYSAAGK 598

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
              A  +F  M  R+ +SW  MIS  + + N    +     +      P  +T +  L A
Sbjct: 599 LSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGA 658

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
           C+    L +GK +H          +  +  +L+ MY +C  ++  A  +F+     D+V 
Sbjct: 659 CSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCN-SMEDAEKVFQSMPTHDIVS 717

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFL-SHGLGVHCYI 359
           ++ +I GY+   D ++AM++FS MR   I+PN +T++ I  S    + L ++G  +H YI
Sbjct: 718 YNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINIHGSFASSNDLHNYGRPLHAYI 777

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEAL 419
           ++ G   D  + N+L+ MY+KCG++ SS  IFN +  ++ VSW  +I+     G+GEEAL
Sbjct: 778 IRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEAL 837

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYA--CYV 477
           +LF++MQ +G + D + +   LS+C     ++E   L    MK     L  + Y     +
Sbjct: 838 KLFIDMQHAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKS---GLDSDSYVVNAAM 894

Query: 478 DLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPEN 535
           D+ GK GK+++  +VV    ++P  +  ++L+S    +G  + AE    Q++    +P+ 
Sbjct: 895 DMYGKCGKMDEMLQVVPDQAIRPQ-QCWNTLISGYAKYGYFKEAEETFKQMVATGRKPDY 953

Query: 536 AANYTLLSMVCSESG 550
                LLS  CS +G
Sbjct: 954 VTFVALLS-ACSHAG 967



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/413 (26%), Positives = 201/413 (48%), Gaps = 4/413 (0%)

Query: 30  LPSVIKACAYAQTHQHF--GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFD 87
           L S++ AC      +    G  +H    ++G   +  I  +L+ +Y        A +LF 
Sbjct: 346 LASLVTACERRGRDEGIACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFW 405

Query: 88  EMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELEL 147
           EMP R+ +SW +++   + NG+   +L  +R+M   G    A   A ++SLC  +     
Sbjct: 406 EMPERNVVSWTALMVALSSNGYLEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVP 465

Query: 148 GRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCI 207
           G Q+ + VIV G  +  V V+ +L+ ++        A ++F++M   + +SW AMIS   
Sbjct: 466 GLQVASQVIVSG-LQNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYS 524

Query: 208 DSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
                     +F  M+  G++P   TL  ++  CA      +G  IH        D    
Sbjct: 525 HQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVT 584

Query: 268 LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
           +  AL++MY    + L  A  +F     +D++ W+++I  Y Q+ + ++A+K   ++   
Sbjct: 585 VINALVNMYSAAGK-LSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHT 643

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
              PN +T  + L +C+    L  G  VH  +++  L  ++ +GN+L+ MY KC S+  +
Sbjct: 644 NESPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDA 703

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
            ++F  M   D VS+  LI GY     G +A+Q+F  M+ +G++P+ IT++ I
Sbjct: 704 EKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINI 756



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 118/420 (28%), Positives = 206/420 (49%), Gaps = 12/420 (2%)

Query: 84  QLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIG 143
            LFDEM  R   +W + ++   + G + ++ EM R M   G  L    LA +++ C + G
Sbjct: 298 HLFDEMADRTPSTWYTAVSGCVRCGSHGKAFEMLRGMREPGVPLSGFALASLVTACERRG 357

Query: 144 ELE---LGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
             E    G  IHAL    G    +V++ TALL LY        A R+F +M  RN VSWT
Sbjct: 358 RDEGIACGAAIHALTHRAGLMG-NVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWT 416

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
           A++     +   +  +  +R M+R+GV         V+  C  L +   G  +       
Sbjct: 417 ALMVALSSNGYLEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVS 476

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
           G      ++ +L+ M+      +H A  +F+R +  D + W+++I  YS  G  S+   +
Sbjct: 477 GLQNQVSVANSLITMFGNLGR-VHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLV 535

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
           FS MR   + P++ TL +++S C      SHG G+H   +++ L+  V++ NAL+NMYS 
Sbjct: 536 FSDMRHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSA 595

Query: 381 CGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
            G ++ +  +F  M+ RD +SW T+IS Y  +    +AL+   ++  +   P+ +T  + 
Sbjct: 596 AGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSA 655

Query: 441 LSACNHAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
           L AC+  G + + + +   V++   ++ + +        + + GK   +EDA KV  +MP
Sbjct: 656 LGACSSPGALIDGKMVHAIVLQLSLQRNLLVG----NSLITMYGKCNSMEDAEKVFQSMP 711



 Score = 47.0 bits (110), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 7/131 (5%)

Query: 151 IHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA---LRVFEQMVIRNEVSWTAMISGCI 207
           IH L  V  +  LS F    LL  Y +      A   L +F++M  R   +W   +SGC+
Sbjct: 38  IHGLA-VRLALPLSAFHRNTLLAFYFRQRDASAAAAALHLFDEMADRTPSTWYTAVSGCV 96

Query: 208 DSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL-RD--LRNGKAIHGYAYCCGFDF 264
                 T  ++ R M+  GV  +   L  ++ AC    RD  +  G AIH   +  G   
Sbjct: 97  RCGRDGTAFEMLRGMRERGVPLSGFALASLVTACERRGRDEGIACGAAIHALTHRAGLMG 156

Query: 265 DHHLSAALMHM 275
           + ++  AL+H+
Sbjct: 157 NVYIGRALLHL 167


>gi|357443809|ref|XP_003592182.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481230|gb|AES62433.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 912

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 169/553 (30%), Positives = 306/553 (55%), Gaps = 5/553 (0%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           SG+Y N      ++ A + +     +G  LH   +  G++ + V+  +++ MY+K  +  
Sbjct: 212 SGVYPNEFTFVKLLGAVS-SFLGLSYGKLLHAHLIMFGAELNLVLKTAVVDMYSKCRRMV 270

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
            A ++ +  P  D   W ++I+ FTQN     ++ +FR+M L G +      + +++  S
Sbjct: 271 DAIKVSNLTPEYDVYLWTTLISGFTQNLQVREAISVFRDMELSGLLPNNFTYSSLLNASS 330

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI-ALRVFEQMVIRNEVSW 199
            I  L+LG Q H+ VI+ G  E  +++  AL+D+Y KC H    A++VF ++   N + W
Sbjct: 331 SILSLDLGEQFHSRVIIVG-LEDDLYIGNALVDMYMKCSHITTNAVKVFREITSPNVMCW 389

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
           T++I+G  + +  D+   LF  MQ  GV+P   T++ +L AC++ R L     +HG+   
Sbjct: 390 TSLIAGFAEKRLEDS-FQLFAEMQAAGVRPNSFTMSAILGACSKTRSLVPTMMLHGHIIK 448

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
              D D  ++ AL+  Y      +  A  +     ++D + ++ +    +Q G    A+K
Sbjct: 449 TKVDIDIAVANALVDTYAG-VGMIDEAWSVIGTMNLRDSITYTCLAARLNQKGHHGMALK 507

Query: 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           +   M  + I+ +  +L + LS+      +  G  +HCY +K+G     S+ N+L+++YS
Sbjct: 508 VLIHMCNDGIKMDEFSLASFLSAAAGLGTMETGKQLHCYSVKSGFQRCHSVSNSLVHLYS 567

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           KCGSI  +++ F +++  D  SW  LISG+ ++G    AL  F +M+ +GV+PD+IT+L+
Sbjct: 568 KCGSIHDANRAFKDISEPDAFSWNGLISGFSWNGLISHALSTFDDMRLAGVKPDSITLLS 627

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           ++SAC+H GL++     F+++ KE  I   ++HY C VDLLG+ G++E+A  V+  M  K
Sbjct: 628 LISACSHGGLLELGLEYFHSMQKEYHITPKLDHYMCLVDLLGRGGRLEEAMGVIEKMSFK 687

Query: 500 PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVW 559
           P + I  +L++AC +HG + + E +A + +E +P + A Y LL+ +   +G     E+  
Sbjct: 688 PDSLICKTLLNACNLHGNVALGEDMARRCLELDPSDPAIYLLLANLYDNAGLSDFGEKTR 747

Query: 560 RVMRAKGLSKSYG 572
           R+MR +GL +S G
Sbjct: 748 RLMRERGLRRSPG 760



 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 140/461 (30%), Positives = 241/461 (52%), Gaps = 13/461 (2%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G+ +H   +K G   D  ++N+L+S+YAK      A  LFDEMP RD +SW +I++  T+
Sbjct: 33  GICIHSPIIKLGLQHDLYLTNNLLSLYAKTFGVHRARHLFDEMPNRDVVSWTTILSSHTK 92

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
              +  +L++F  M   G       L+  +  C  +GE E G QIH   +  G  E++ F
Sbjct: 93  TKHHSDALQLFDMMIGSGEYPNEFTLSSALRSCFALGEFERGMQIHCSAVKLG-LEMNRF 151

Query: 167 VSTALLDLYSKC-----HHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRA 221
           V T+L++ Y+KC       W +   V +   +   VSWT M+S  +++  +    +++  
Sbjct: 152 VGTSLVEFYTKCGCCSVEAWKLLSLVKDGGDV---VSWTTMLSSLVENGKWGEAFEIYVK 208

Query: 222 MQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTE 281
           M   GV P   T   +L A +    L  GK +H +    G + +  L  A++ MY +C  
Sbjct: 209 MIESGVYPNEFTFVKLLGAVSSFLGLSYGKLLHAHLIMFGAELNLVLKTAVVDMYSKCRR 268

Query: 282 ALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILS 341
            +   ++    T   DV +W+++I G++Q+  + EA+ +F  M L  + PN+ T  ++L+
Sbjct: 269 MVDAIKVS-NLTPEYDVYLWTTLISGFTQNLQVREAISVFRDMELSGLLPNNFTYSSLLN 327

Query: 342 SCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSH-QIFNEMAARDFV 400
           + +    L  G   H  ++  GL  D+ IGNAL++MY KC  IT++  ++F E+ + + +
Sbjct: 328 ASSSILSLDLGEQFHSRVIIVGLEDDLYIGNALVDMYMKCSHITTNAVKVFREITSPNVM 387

Query: 401 SWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNV 460
            WT+LI+G+      E++ QLF EMQ +GV P++ T+ AIL AC+    +     L  ++
Sbjct: 388 CWTSLIAGFA-EKRLEDSFQLFAEMQAAGVRPNSFTMSAILGACSKTRSLVPTMMLHGHI 446

Query: 461 MKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPS 501
           +K  K+ + I      VD     G I++A  V+ TM ++ S
Sbjct: 447 IK-TKVDIDIAVANALVDTYAGVGMIDEAWSVIGTMNLRDS 486



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 158/310 (50%), Gaps = 3/310 (0%)

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           ++S C+    L+ G  IH+ +I  G  +  ++++  LL LY+K      A  +F++M  R
Sbjct: 21  VLSFCNS-NSLKEGICIHSPIIKLG-LQHDLYLTNNLLSLYAKTFGVHRARHLFDEMPNR 78

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
           + VSWT ++S    ++++   + LF  M   G  P   TL+  L +C  L +   G  IH
Sbjct: 79  DVVSWTTILSSHTKTKHHSDALQLFDMMIGSGEYPNEFTLSSALRSCFALGEFERGMQIH 138

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK-DVVIWSSIIRGYSQSGD 313
             A   G + +  +  +L+  Y +C      A  +    K   DVV W++++    ++G 
Sbjct: 139 CSAVKLGLEMNRFVGTSLVEFYTKCGCCSVEAWKLLSLVKDGGDVVSWTTMLSSLVENGK 198

Query: 314 LSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNA 373
             EA +++ +M    + PN  T + +L + +    LS+G  +H +++  G   ++ +  A
Sbjct: 199 WGEAFEIYVKMIESGVYPNEFTFVKLLGAVSSFLGLSYGKLLHAHLIMFGAELNLVLKTA 258

Query: 374 LMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPD 433
           +++MYSKC  +  + ++ N     D   WTTLISG+  +    EA+ +F +M+ SG+ P+
Sbjct: 259 VVDMYSKCRRMVDAIKVSNLTPEYDVYLWTTLISGFTQNLQVREAISVFRDMELSGLLPN 318

Query: 434 AITVLAILSA 443
             T  ++L+A
Sbjct: 319 NFTYSSLLNA 328



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 69/126 (54%), Gaps = 7/126 (5%)

Query: 319 KLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMY 378
           K FS  R +       T L +LS C   S L  G+ +H  I+K GL  D+ + N L+++Y
Sbjct: 7   KTFSLSRFQE------TCLRVLSFCNSNS-LKEGICIHSPIIKLGLQHDLYLTNNLLSLY 59

Query: 379 SKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
           +K   +  +  +F+EM  RD VSWTT++S +    +  +ALQLF  M  SG  P+  T+ 
Sbjct: 60  AKTFGVHRARHLFDEMPNRDVVSWTTILSSHTKTKHHSDALQLFDMMIGSGEYPNEFTLS 119

Query: 439 AILSAC 444
           + L +C
Sbjct: 120 SALRSC 125


>gi|225427607|ref|XP_002269121.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19220,
           mitochondrial [Vitis vinifera]
          Length = 828

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 166/533 (31%), Positives = 284/533 (53%), Gaps = 7/533 (1%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G  +H   L+     D  ++NSLI MY+K    + A  +F  +P RD +SWN++I+ ++Q
Sbjct: 297 GRAVHGLTLRREMGLDFSVTNSLIDMYSKCKDVKRAEHVFKAIPERDLVSWNAMISGYSQ 356

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           NG    +  +FR++           L  I+  C     L+ G  IH   +  G F  +  
Sbjct: 357 NGHSREAQHLFRQLLQSYSQCSLSTLLAILPSCDSSEFLQFGESIHCWQLKLG-FANNPL 415

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNE-VSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
              +L+ +Y  C   +    + + +    + V W  +++GC  + ++   +  F  M+++
Sbjct: 416 AVNSLMLMYINCGDLVACFSLLQTVSAAADIVCWNTVMAGCTQNGHFWEALKAFNLMRQD 475

Query: 226 -GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
             V    V L  V+ AC  L  L  G ++HG A     + D  +  AL+ MY  C E + 
Sbjct: 476 PDVCHDSVALFNVISACGNLELLFAGGSLHGLALKTLMESDIRVQNALITMYGRCGE-IE 534

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
            ARIIF  +  +++  W+ +I  +SQ+ D   A++LF  +  E   PN +T++ ILS+CT
Sbjct: 535 NARIIFGFSCNRNLCSWNCMISAFSQNKDGRRALELFCHIEFE---PNEITIVGILSACT 591

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
           +   L HG  +H +++++ L  +  +  AL +MYS CG + ++ QIF     R   +W +
Sbjct: 592 QLGVLRHGKQIHGHVIRSRLQGNSFVSAALEDMYSNCGRLDTAFQIFQSSPERSVAAWNS 651

Query: 405 LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK 464
           +IS +GFH  G +A++LF EM+E G  P   T +++LSAC+H+GLV E    ++N+++  
Sbjct: 652 MISAFGFHSNGGKAIELFHEMRECGTRPTKSTFISLLSACSHSGLVNEGLWYYSNMLELF 711

Query: 465 KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEML 524
            +    EH+ C VD+LG++G++ +A + +  MP +P   +  +L+SAC  HG L++   +
Sbjct: 712 NVEADTEHHVCMVDMLGRAGRLGEAYEFIRQMPTQPEPGVWGALLSACSYHGDLKMGREV 771

Query: 525 AHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           A  L E EPEN   Y  LS +   +G W  A E+ R+++ KGL K   +S I+
Sbjct: 772 AELLFELEPENVGYYISLSNMYVAAGRWKDAVELRRIIQDKGLKKPAAYSLID 824



 Score =  211 bits (538), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 170/571 (29%), Positives = 284/571 (49%), Gaps = 15/571 (2%)

Query: 17  ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           EL   G+  ++  L  V+ A ++       G  LH  + K+G  +D  + N+LI MYAK 
Sbjct: 63  ELMGEGVGLDSTTLLIVVSASSHMGNLTQ-GRVLHGISFKTGLLSDSFLCNALIDMYAKC 121

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
            +  S+  +F  M YRD ISWNS++     N +  +SL  F++M           L   +
Sbjct: 122 GELSSSECVFGGMEYRDIISWNSMMRGCAYNNYPKKSLWYFKKMAYSSEQADNVSLTCAV 181

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELS-VFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           S  + +GEL  G+ IH   I  G  ++S      +L+ LYS+C     A  +F++M  ++
Sbjct: 182 SASALLGELSFGQVIHGWGIKLGYKDISHNSFENSLISLYSQCRDIQAAEILFKEMKYKD 241

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREG-VKPTRVTLTIVLLACAELRDLRNGKAIH 254
            VSW AM+ G   +Q      DL   MQ  G V+P  VT+ I++  CAEL  LR G+A+H
Sbjct: 242 IVSWNAMLDGLALNQRIWEAFDLLHEMQLLGCVQPDSVTVVIIIPLCAELMLLREGRAVH 301

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
           G         D  ++ +L+ MY +C + +  A  +F+    +D+V W+++I GYSQ+G  
Sbjct: 302 GLTLRREMGLDFSVTNSLIDMYSKCKD-VKRAEHVFKAIPERDLVSWNAMISGYSQNGHS 360

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
            EA  LF ++     + +  TLLAIL SC    FL  G  +HC+ +K G   +    N+L
Sbjct: 361 REAQHLFRQLLQSYSQCSLSTLLAILPSCDSSEFLQFGESIHCWQLKLGFANNPLAVNSL 420

Query: 375 MNMYSKCGSITSSHQIFNEM-AARDFVSWTTLISGYGFHGYGEEALQLF-LEMQESGVEP 432
           M MY  CG + +   +   + AA D V W T+++G   +G+  EAL+ F L  Q+  V  
Sbjct: 421 MLMYINCGDLVACFSLLQTVSAAADIVCWNTVMAGCTQNGHFWEALKAFNLMRQDPDVCH 480

Query: 433 DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKV 492
           D++ +  ++SAC +  L+    +L    +K   +   I      + + G+ G+IE+A ++
Sbjct: 481 DSVALFNVISACGNLELLFAGGSLHGLALK-TLMESDIRVQNALITMYGRCGEIENA-RI 538

Query: 493 VSTMPMKPSTRILSSLVSACRIH--GRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESG 550
           +       +    + ++SA   +  GR    E+  H  IE EP       +LS  C++ G
Sbjct: 539 IFGFSCNRNLCSWNCMISAFSQNKDGR-RALELFCH--IEFEPNEITIVGILS-ACTQLG 594

Query: 551 NWLGAEEV-WRVMRAKGLSKSYGFSRIENEY 580
                +++   V+R++    S+  + +E+ Y
Sbjct: 595 VLRHGKQIHGHVIRSRLQGNSFVSAALEDMY 625



 Score =  207 bits (528), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 124/402 (30%), Positives = 216/402 (53%), Gaps = 5/402 (1%)

Query: 58  GSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMF 117
           G+ A    S SL++ Y++ +   S++ LFDE+ YRD I WN++I    +N  +  ++ +F
Sbjct: 2   GALAHLPTSTSLLTAYSRAADFSSSWALFDEILYRDVILWNAMITASVENQCFGVAVNLF 61

Query: 118 REMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSK 177
            E+   G  L +  L  ++S  S +G L  GR +H +    G    S F+  AL+D+Y+K
Sbjct: 62  VELMGEGVGLDSTTLLIVVSASSHMGNLTQGRVLHGISFKTGLLSDS-FLCNALIDMYAK 120

Query: 178 CHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIV 237
           C     +  VF  M  R+ +SW +M+ GC  +      +  F+ M     +   V+LT  
Sbjct: 121 CGELSSSECVFGGMEYRDIISWNSMMRGCAYNNYPKKSLWYFKKMAYSSEQADNVSLTCA 180

Query: 238 LLACAELRDLRNGKAIHGYAYCCGF-DFDHH-LSAALMHMYCECTEALHPARIIFERTKV 295
           + A A L +L  G+ IHG+    G+ D  H+    +L+ +Y +C + +  A I+F+  K 
Sbjct: 181 VSASALLGELSFGQVIHGWGIKLGYKDISHNSFENSLISLYSQCRD-IQAAEILFKEMKY 239

Query: 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER-IEPNSVTLLAILSSCTRQSFLSHGLG 354
           KD+V W++++ G + +  + EA  L   M+L   ++P+SVT++ I+  C     L  G  
Sbjct: 240 KDIVSWNAMLDGLALNQRIWEAFDLLHEMQLLGCVQPDSVTVVIIIPLCAELMLLREGRA 299

Query: 355 VHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGY 414
           VH   ++  +  D S+ N+L++MYSKC  +  +  +F  +  RD VSW  +ISGY  +G+
Sbjct: 300 VHGLTLRREMGLDFSVTNSLIDMYSKCKDVKRAEHVFKAIPERDLVSWNAMISGYSQNGH 359

Query: 415 GEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETL 456
             EA  LF ++ +S  +    T+LAIL +C+ +  ++  E++
Sbjct: 360 SREAQHLFRQLLQSYSQCSLSTLLAILPSCDSSEFLQFGESI 401


>gi|15225922|ref|NP_182129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100645|sp|O82363.1|PP203_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g46050, mitochondrial; Flags: Precursor
 gi|3702341|gb|AAC62898.1| hypothetical protein [Arabidopsis thaliana]
 gi|330255542|gb|AEC10636.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 172/516 (33%), Positives = 280/516 (54%), Gaps = 24/516 (4%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQN- 107
           Q H   +K G      + N L+  Y K  + + A +LFDEMP R+ ++WN +I+   Q  
Sbjct: 57  QEHGFMVKQGIYNSLFLQNKLLQAYTKIREFDDADKLFDEMPLRNIVTWNILIHGVIQRD 116

Query: 108 ---------GFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVD 158
                    GF   S  +F ++      L      G+I LC+    ++ G Q+H L++  
Sbjct: 117 GDTNHRAHLGFCYLSRILFTDV-----SLDHVSFMGLIRLCTDSTNMKAGIQLHCLMVKQ 171

Query: 159 GSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDL 218
           G  E S F ST+L+  Y KC   + A RVFE ++ R+ V W A++S  + +   D    L
Sbjct: 172 G-LESSCFPSTSLVHFYGKCGLIVEARRVFEAVLDRDLVLWNALVSSYVLNGMIDEAFGL 230

Query: 219 FRAM--QREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMY 276
            + M   +   +    T + +L AC     +  GK IH   +   + FD  ++ AL++MY
Sbjct: 231 LKLMGSDKNRFRGDYFTFSSLLSACR----IEQGKQIHAILFKVSYQFDIPVATALLNMY 286

Query: 277 CECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTL 336
            + +  L  AR  FE   V++VV W+++I G++Q+G+  EAM+LF +M LE ++P+ +T 
Sbjct: 287 AK-SNHLSDARECFESMVVRNVVSWNAMIVGFAQNGEGREAMRLFGQMLLENLQPDELTF 345

Query: 337 LAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA 396
            ++LSSC + S +     V   + K G    +S+ N+L++ YS+ G+++ +   F+ +  
Sbjct: 346 ASVLSSCAKFSAIWEIKQVQAMVTKKGSADFLSVANSLISSYSRNGNLSEALLCFHSIRE 405

Query: 397 RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETL 456
            D VSWT++I     HG+ EE+LQ+F  M +  ++PD IT L +LSAC+H GLV+E    
Sbjct: 406 PDLVSWTSVIGALASHGFAEESLQMFESMLQK-LQPDKITFLEVLSACSHGGLVQEGLRC 464

Query: 457 FNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG 516
           F  + +  KI    EHY C +DLLG++G I++A  V+++MP +PST  L++    C IH 
Sbjct: 465 FKRMTEFYKIEAEDEHYTCLIDLLGRAGFIDEASDVLNSMPTEPSTHALAAFTGGCNIHE 524

Query: 517 RLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNW 552
           + E  +  A +L+E EP    NY++LS      G+W
Sbjct: 525 KRESMKWGAKKLLEIEPTKPVNYSILSNAYVSEGHW 560


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 163/531 (30%), Positives = 281/531 (52%), Gaps = 39/531 (7%)

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A  +F+ +   + + WN++I     +   V SL ++  M   G +  +     ++  C++
Sbjct: 17  ATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAK 76

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI------------------ 183
                 G+QIH  V+  G F+L ++V T+L+ +Y +  +W +                  
Sbjct: 77  SKTFTEGQQIHGQVLKLG-FDLDLYVHTSLISMYVQ--NWRLEDAYKVFDRSSHRDVVSY 133

Query: 184 ---------------ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
                          A ++F+++ +++ VSW AMISG  ++  Y   ++LF  M +  V+
Sbjct: 134 TALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVR 193

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
           P   T   VL ACA    +  G+ +H +    GFD +  +  AL+ +Y +C E +  A  
Sbjct: 194 PDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGE-VETACG 252

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
           +F+    KDV+ W+++I GY+      EA+ LF  M      PN VT+L++L +C     
Sbjct: 253 LFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGA 312

Query: 349 LSHGLGVHCYIMK--AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
           +  G  +H YI K   G+    S+  +L++MY+KCG I ++HQ+FN M  +   SW  +I
Sbjct: 313 IDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMI 372

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
            G+  HG  + +  LF  M++ G+EPD IT + +LSAC+H+G++     +F ++ ++ K+
Sbjct: 373 FGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKM 432

Query: 467 ALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAH 526
              +EHY C +DLLG SG  ++A ++++TM M+P   I  SL+ AC++HG +E+AE  A 
Sbjct: 433 TPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAESFAQ 492

Query: 527 QLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            LI+ EPEN ++Y LLS + + +G W     +  ++  K + K  G S IE
Sbjct: 493 NLIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIE 543



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 117/273 (42%), Gaps = 15/273 (5%)

Query: 5   HFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHC---TALKSGSDA 61
           + Y++ L L+ QE+  SG   N   + SV+ ACA+       G  +H      LK  ++A
Sbjct: 276 NLYKEALLLF-QEMLRSGETPNDVTMLSVLPACAHLGAID-IGRWIHVYIDKRLKGVTNA 333

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
              +  SLI MYAK    E+A+Q+F+ M ++   SWN++I  F  +G    S ++F  M 
Sbjct: 334 SS-LRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMR 392

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
             G         G++S CS  G L+LGR I   +  D      +     ++DL      +
Sbjct: 393 KIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLF 452

Query: 182 LIALRVFEQMVIRNE-VSWTAMISGCIDSQNYDTGIDLFRAMQR-EGVKPTRVTLTIVLL 239
             A  +   M +  + V W +++  C    N +      + + + E   P+   L   + 
Sbjct: 453 KEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAESFAQNLIKIEPENPSSYILLSNIY 512

Query: 240 A-------CAELRDLRNGKAIHGYAYCCGFDFD 265
           A        A +R L NGK +     C   + D
Sbjct: 513 ASAGRWEDVARIRALLNGKCMKKVPGCSSIEVD 545


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 152/481 (31%), Positives = 262/481 (54%), Gaps = 33/481 (6%)

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH------- 180
           +  L + ++  C     L LG+Q+H+L+I  G      F+S  LL+LYSKC         
Sbjct: 51  EPSLFSHLLQSCISENSLSLGKQLHSLIITSGCSS-DKFISNHLLNLYSKCGQLDTAITL 109

Query: 181 ------------------------WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGI 216
                                   W+ A ++F++M  RN  +W AM++G I  +  + G+
Sbjct: 110 FGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGL 169

Query: 217 DLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMY 276
            LF  M   G  P    L  VL  CA LR L  G+ +HGY   CGF+F+  + ++L HMY
Sbjct: 170 GLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMY 229

Query: 277 CECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTL 336
            +C       R+I      ++VV W+++I G +Q+G   E +  ++ M++    P+ +T 
Sbjct: 230 MKCGSLGEGERLI-RAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITF 288

Query: 337 LAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA 396
           ++++SSC+  + L  G  +H  ++KAG +  VS+ ++L++MYS+CG +  S ++F E   
Sbjct: 289 VSVISSCSELATLGQGQQIHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECEN 348

Query: 397 RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETL 456
            D V W+++I+ YGFHG G EA+ LF +M++  +E + +T L++L AC+H GL ++    
Sbjct: 349 GDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIKF 408

Query: 457 FNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG 516
           F+ ++++  +   +EHY C VDLLG+ G +E+A  ++ +MP+K       +L+SAC+IH 
Sbjct: 409 FDLMVEKYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKADVITWKTLLSACKIHK 468

Query: 517 RLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
           + E+A  ++ ++   +P +   Y LLS + +    W    +V + MR + L K  G S +
Sbjct: 469 KTEMARRISEEVFRLDPRDPVPYVLLSNIHASDKRWDDVSDVRKAMRDRKLKKEPGISWL 528

Query: 577 E 577
           E
Sbjct: 529 E 529



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/438 (25%), Positives = 203/438 (46%), Gaps = 36/438 (8%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           S ++S  ++   ++++C  ++     G QLH   + SG  +D  ISN L+++Y+K  + +
Sbjct: 46  SHIWSEPSLFSHLLQSCI-SENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLD 104

Query: 81  -------------------------------SAYQLFDEMPYRDTISWNSIINCFTQNGF 109
                                          +A ++FDEMP R+  +WN+++    Q  F
Sbjct: 105 TAITLFGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEF 164

Query: 110 YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVST 169
               L +F  M   GF+     L  ++  C+ +  L  GRQ+H  V   G FE ++ V +
Sbjct: 165 NEEGLGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCG-FEFNLVVVS 223

Query: 170 ALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKP 229
           +L  +Y KC       R+   M  +N V+W  +I+G   +   +  +D +  M+  G +P
Sbjct: 224 SLAHMYMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRP 283

Query: 230 TRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARII 289
            ++T   V+ +C+EL  L  G+ IH      G      + ++L+ MY  C   L  +  +
Sbjct: 284 DKITFVSVISSCSELATLGQGQQIHAEVIKAGASLIVSVISSLISMYSRCG-CLEYSLKV 342

Query: 290 FERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFL 349
           F   +  DVV WSS+I  Y   G   EA+ LF++M  E++E N VT L++L +C+     
Sbjct: 343 FLECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLK 402

Query: 350 SHGLG-VHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLIS 407
             G+      + K G+   +     ++++  + GS+  +  +   M  + D ++W TL+S
Sbjct: 403 EKGIKFFDLMVEKYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKADVITWKTLLS 462

Query: 408 GYGFHGYGEEALQLFLEM 425
               H   E A ++  E+
Sbjct: 463 ACKIHKKTEMARRISEEV 480



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 122/242 (50%), Gaps = 3/242 (1%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           ++   F E+ L L+ + ++  G   +   L SV++ CA  +     G Q+H    K G +
Sbjct: 159 LIQFEFNEEGLGLFSR-MNELGFLPDEFALGSVLRGCAGLRALVA-GRQVHGYVRKCGFE 216

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
            + V+ +SL  MY K        +L   MP ++ ++WN++I    QNG+    L+ +  M
Sbjct: 217 FNLVVVSSLAHMYMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMM 276

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
            + GF         +IS CS++  L  G+QIHA VI  G+  L V V ++L+ +YS+C  
Sbjct: 277 KMAGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKAGA-SLIVSVISSLISMYSRCGC 335

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
              +L+VF +    + V W++MI+           IDLF  M++E ++   VT   +L A
Sbjct: 336 LEYSLKVFLECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYA 395

Query: 241 CA 242
           C+
Sbjct: 396 CS 397


>gi|125532437|gb|EAY79002.1| hypothetical protein OsI_34111 [Oryza sativa Indica Group]
          Length = 847

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 179/562 (31%), Positives = 302/562 (53%), Gaps = 5/562 (0%)

Query: 20  PSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA-DPVISNSLISMYAKFSK 78
           P+   + T  L S++++C  A   +  G  LH   + SG+ A    ++N LI+MY+  + 
Sbjct: 163 PAPAAATTVHLASLLQSCGRAGDLRR-GRLLHARLVLSGAAAASTFLANHLITMYSHCAD 221

Query: 79  PESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISL 138
             SA +LF  MP R+ +SW ++++  +QN  +  +L  F  M   G       L+     
Sbjct: 222 LASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARA 281

Query: 139 CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
            + +G     R   A   V   F+  +FV++ L D+YSKC     A RVF+QM  ++ V+
Sbjct: 282 AAALGAPLRARSCTASASV--GFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVA 339

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREG-VKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
           WTAMI G   + + +  +  FR M+REG V   +     VL A   L+D    K+IH   
Sbjct: 340 WTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCV 399

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
              GF+ +  +  AL+ MY +  +    +R++       +VV  +S+I GY ++  + EA
Sbjct: 400 TKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEA 459

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
           + ++  +R + +EPN  T  +++  C  Q+ L  G  +H  ++K  L  D  +G+ L++M
Sbjct: 460 LVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDM 519

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           Y KCG I+ S Q+FNE+  R  ++W  +I+ +  HG+G EA+Q F  M  SG+ P+ I  
Sbjct: 520 YGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAF 579

Query: 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
           +++L+AC+HAGLV E    F ++ +   I    EHY+C +D  G++G++++A K +S MP
Sbjct: 580 VSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMP 639

Query: 498 MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEE 557
           +KP+     SL+ ACR+ G  E+ E+ A  L++ EP N   +  LS + +  G W   + 
Sbjct: 640 IKPNAYGWCSLLGACRMRGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKA 699

Query: 558 VWRVMRAKGLSKSYGFSRIENE 579
           V ++MR   + K  GFS +++ 
Sbjct: 700 VRKLMRDSRIKKLPGFSWVDSN 721



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 113/425 (26%), Positives = 188/425 (44%), Gaps = 71/425 (16%)

Query: 132 LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM 191
           LA ++  C + G+L  GR +HA +++ G+   S F++  L+ +YS C     ALR+F  M
Sbjct: 23  LASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAM 82

Query: 192 VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTR-------------------- 231
             RN VSWT ++SG   +  +   +  F AM+R GV PTR                    
Sbjct: 83  PRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRLIYETKFHNTLGPKHTLAAS 142

Query: 232 ----------------------------VTLTIVLLACAELRDLRNGKAIH------GYA 257
                                       V L  +L +C    DLR G+ +H      G A
Sbjct: 143 HCHSGPTLMVKYWGQRLWRPPAPAAATTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAA 202

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
               F  +H     L+ MY  C + L  A  +F     ++ V W++++ G SQ+   ++A
Sbjct: 203 AASTFLANH-----LITMYSHCAD-LASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADA 256

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS--IGNALM 375
           +  F+ MR   + P   T  A+ S+    + L   L        A + FD    + + L 
Sbjct: 257 LAAFAAMRRAGVAP---TRFALSSAARAAAALGAPLRARSCTASASVGFDTELFVASNLA 313

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG-VEPDA 434
           +MYSKCG ++ + ++F++M  +D V+WT +I GY  +G  E A+  F +M+  G V  D 
Sbjct: 314 DMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQ 373

Query: 435 ITVLAILSACNHAGLVKEA--ETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKV 492
               ++LSA   +G +K+       +  + +    L +      +D+  KS  +E A +V
Sbjct: 374 HVFCSVLSA---SGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRV 430

Query: 493 VSTMP 497
           +   P
Sbjct: 431 LKIDP 435



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 90/209 (43%), Gaps = 21/209 (10%)

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS-IGNALMNMYSKCGSITSSHQI 390
            +V L ++L SC R   L  G  +H  ++ +G     + + N L+ MYS C  + S+ ++
Sbjct: 19  TTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRL 78

Query: 391 FNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLV 450
           F  M  R+ VSWTTL+SG   +    +AL  F  M+ +GV P  +               
Sbjct: 79  FAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRLIY------------- 125

Query: 451 KEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVS 510
              ET F+N +  K   LA  H      L+ K              P   +T  L+SL+ 
Sbjct: 126 ---ETKFHNTLGPKH-TLAASHCHSGPTLMVKYWGQR---LWRPPAPAAATTVHLASLLQ 178

Query: 511 ACRIHGRLEVAEMLAHQLIEAEPENAANY 539
           +C   G L    +L  +L+ +    A+ +
Sbjct: 179 SCGRAGDLRRGRLLHARLVLSGAAAASTF 207



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 2/89 (2%)

Query: 20  PSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA-DPVISNSLISMYAKFSK 78
           P+   + T  L S++++C  A   +  G  LH   + SG+ A    ++N LI+MY+  + 
Sbjct: 13  PAPAAATTVHLASLLQSCGRAGDLRR-GRLLHARLVLSGAAAASTFLANHLITMYSHCAD 71

Query: 79  PESAYQLFDEMPYRDTISWNSIINCFTQN 107
             SA +LF  MP R+ +SW ++++  +QN
Sbjct: 72  LASALRLFAAMPRRNAVSWTTLVSGLSQN 100


>gi|302782902|ref|XP_002973224.1| hypothetical protein SELMODRAFT_98955 [Selaginella moellendorffii]
 gi|300158977|gb|EFJ25598.1| hypothetical protein SELMODRAFT_98955 [Selaginella moellendorffii]
          Length = 546

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 173/541 (31%), Positives = 285/541 (52%), Gaps = 7/541 (1%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G+  N+     ++ AC+     +  G ++H   +  G D D V+S +++ MY+K  K   
Sbjct: 5   GIRPNSVTFLWILGACSNLGDVET-GRKIHARMVFLGWDTDTVVSTAILGMYSKCEKLGD 63

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A ++FD +  +D +SW +II  F+Q G    +LE+F EM L G          I++ C+ 
Sbjct: 64  AKKVFDSLRRKDVVSWTAIITAFSQLGRPRVALELFWEMDLDGVKPNESTFVNILAACTY 123

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
           +  LE G +++   I  G +   VFV +  + +YS+  + + A   F+ +  ++  SW A
Sbjct: 124 MDALEDGDKLYKRAISCG-YGADVFVGSTAVTMYSRFGNLVEAKAAFDHLREKSTGSWNA 182

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           ++   I   +    I L++ M   G +P   T   +L AC+ L  L  G+ IH      G
Sbjct: 183 IVRAYIQHGHISQAISLYKEMDVHGAEPDTFTHVCLLGACSSLGALEEGERIHAR---MG 239

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
              D    +A++ MY +C    H A   F +    +VV+W+++I GY Q     EA+ L+
Sbjct: 240 DKPDGLAGSAIVAMYAKCGGIEH-AMTAFTKMSSSNVVVWNALIAGYVQGEHWQEALDLY 298

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
             M LE +E +  T  ++L +C+    LS G  VH  I+  GL   V + N L+NM++KC
Sbjct: 299 HAMNLEGLEADIYTFSSVLGACSGAKDLSEGRAVHARIVSGGLEVVVPLQNGLVNMFAKC 358

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
           GS+T + ++F  MA+R+ VSW ++++ +  HG G  A +LF EM   G EP   T  +IL
Sbjct: 359 GSLTLALEMFRGMASRNTVSWNSMVTAFCQHGEGGGAFELFKEMLLEGAEPHEQTFTSIL 418

Query: 442 SACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPS 501
           + C+H+GL+++    F +++ E  IA   EHY C +DLLG++G I  A K+V       S
Sbjct: 419 NFCSHSGLLQDGFGYFFDMVDEFGIAPVDEHYRCVIDLLGRTGHIAAAEKMVE-HAFPGS 477

Query: 502 TRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRV 561
               +SL++ACR +  +E+A     +L+   PEN A    L+ +C+E+G W   E V R+
Sbjct: 478 VIAWTSLLAACRTYRNVEIAARATEELMRVRPENPAPLVQLANLCAEAGRWDAVERVKRM 537

Query: 562 M 562
           M
Sbjct: 538 M 538



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 90/275 (32%), Positives = 145/275 (52%), Gaps = 5/275 (1%)

Query: 222 MQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTE 281
           M  EG++P  VT   +L AC+ L D+  G+ IH      G+D D  +S A++ MY +C E
Sbjct: 1   MDLEGIRPNSVTFLWILGACSNLGDVETGRKIHARMVFLGWDTDTVVSTAILGMYSKC-E 59

Query: 282 ALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILS 341
            L  A+ +F+  + KDVV W++II  +SQ G    A++LF  M L+ ++PN  T + IL+
Sbjct: 60  KLGDAKKVFDSLRRKDVVSWTAIITAFSQLGRPRVALELFWEMDLDGVKPNESTFVNILA 119

Query: 342 SCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS 401
           +CT    L  G  ++   +  G   DV +G+  + MYS+ G++  +   F+ +  +   S
Sbjct: 120 ACTYMDALEDGDKLYKRAISCGYGADVFVGSTAVTMYSRFGNLVEAKAAFDHLREKSTGS 179

Query: 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVM 461
           W  ++  Y  HG+  +A+ L+ EM   G EPD  T + +L AC+  G ++E E +    M
Sbjct: 180 WNAIVRAYIQHGHISQAISLYKEMDVHGAEPDTFTHVCLLGACSSLGALEEGERIHAR-M 238

Query: 462 KEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
            +K   LA    +  V +  K G IE A    + M
Sbjct: 239 GDKPDGLA---GSAIVAMYAKCGGIEHAMTAFTKM 270



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 114/254 (44%), Gaps = 34/254 (13%)

Query: 324 MRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS 383
           M LE I PNSVT L IL +C+    +  G  +H  ++  G + D  +  A++ MYSKC  
Sbjct: 1   MDLEGIRPNSVTFLWILGACSNLGDVETGRKIHARMVFLGWDTDTVVSTAILGMYSKCEK 60

Query: 384 ITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
           +  + ++F+ +  +D VSWT +I+ +   G    AL+LF EM   GV+P+  T + IL+A
Sbjct: 61  LGDAKKVFDSLRRKDVVSWTAIITAFSQLGRPRVALELFWEMDLDGVKPNESTFVNILAA 120

Query: 444 CNHAGLVKEAETLFNN----------------VMKEKKIALAIEHYACYVDLLGKS---- 483
           C +   +++ + L+                  V    +    +E  A +  L  KS    
Sbjct: 121 CTYMDALEDGDKLYKRAISCGYGADVFVGSTAVTMYSRFGNLVEAKAAFDHLREKSTGSW 180

Query: 484 ----------GKIEDACKVVSTMPM---KPSTRILSSLVSACRIHGRLEVAEMLAHQLIE 530
                     G I  A  +   M +   +P T     L+ AC   G LE  E + H  + 
Sbjct: 181 NAIVRAYIQHGHISQAISLYKEMDVHGAEPDTFTHVCLLGACSSLGALEEGERI-HARMG 239

Query: 531 AEPENAANYTLLSM 544
            +P+  A   +++M
Sbjct: 240 DKPDGLAGSAIVAM 253


>gi|225460143|ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Vitis vinifera]
          Length = 748

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 174/599 (29%), Positives = 303/599 (50%), Gaps = 41/599 (6%)

Query: 17  ELHPSGLYSNTAILP--SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYA 74
            LH S    +  + P  S++ +C   ++    G QLH   +  G +  P++   L++ Y+
Sbjct: 88  RLHASSASQDLIVHPISSLLSSCTDVKSLAE-GRQLHGHIISLGFEQHPILVPKLVTFYS 146

Query: 75  KFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAG 134
            F+    A+ + +         WN +I+ + +NGF  ++L  +++M   G          
Sbjct: 147 AFNLLVDAHVITENSNILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPS 206

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           ++  C +  +L  G+++H   I     + S+ V  AL+ +Y KC    IA  +F+++  R
Sbjct: 207 VLKACGEELDLGFGKEVHE-SINASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIPER 265

Query: 195 NEVSWTAMIS-----------------------------------GCIDSQNYDTGIDLF 219
           + VSW +MIS                                   G + + NY   ++L 
Sbjct: 266 DAVSWNSMISVYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELL 325

Query: 220 RAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCEC 279
             M++ G     V L I L AC+ + D + GK IH +A    F     +  AL+ MY  C
Sbjct: 326 SQMRKCGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNALITMYSRC 385

Query: 280 TEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAI 339
            +  H A ++F+  + K ++ W+SII G        EA  L   M L  IEPN VT+ ++
Sbjct: 386 KDLKH-AYLLFQLMEAKSLITWNSIISGCCHMDRSEEASFLLREMLLFGIEPNYVTIASV 444

Query: 340 LSSCTRQSFLSHGLGVHCYIMK-AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARD 398
           L  C R + L HG   HCY+ +       + + NAL++MY++ G +  + ++F+ +  RD
Sbjct: 445 LPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERD 504

Query: 399 FVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFN 458
            +++T++I+GYG  G G+ AL+LF EM    ++PD IT++A+LSAC+H+GLV + + LF 
Sbjct: 505 KMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQGQLLFE 564

Query: 459 NVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRL 518
            +     +   +EH+AC  DL G++G +  A +++  MP KP+  + ++L+ ACRIH   
Sbjct: 565 KMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRNMPYKPTPAMWATLIGACRIHRNT 624

Query: 519 EVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           E+ E  A +L+E +PEN   Y L++ + + +G W    +V   MR  G+ K+ G + ++
Sbjct: 625 EIGEWAAEKLLEMKPENPGYYVLIANMYAAAGCWNKLAKVRIFMRDLGVRKAPGCAWVD 683



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 137/467 (29%), Positives = 224/467 (47%), Gaps = 47/467 (10%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V   F ++ L  YKQ +   G+  +    PSV+KAC   +    FG ++H +   S    
Sbjct: 177 VRNGFCQKALSAYKQMVK-KGIRPDNFTYPSVLKACG-EELDLGFGKEVHESINASRIKW 234

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
             ++ N+LISMY K  K   A  LFD++P RD +SWNS+I+ +   G +  + E+F  M+
Sbjct: 235 SLIVHNALISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSMW 294

Query: 122 -------------LCGFVLKA-------ELL-------------AGIISL--CSQIGELE 146
                        + G  L+        ELL             A II L  CS IG+ +
Sbjct: 295 AEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKCGSHLDSVALIIGLGACSHIGDAK 354

Query: 147 LGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGC 206
           LG++IH+  I     E+   V  AL+ +YS+C     A  +F+ M  ++ ++W ++ISGC
Sbjct: 355 LGKEIHSFAIRSCFGEVDT-VKNALITMYSRCKDLKHAYLLFQLMEAKSLITWNSIISGC 413

Query: 207 IDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDH 266
                 +    L R M   G++P  VT+  VL  CA + +L++GK  H Y      DF  
Sbjct: 414 CHMDRSEEASFLLREMLLFGIEPNYVTIASVLPLCARVANLQHGKEFHCY-MTRREDFKD 472

Query: 267 H--LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM 324
           H  L  AL+ MY    + L  AR +F+    +D + ++S+I GY   G+   A+KLF  M
Sbjct: 473 HLLLWNALVDMYARSGKVLE-ARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEM 531

Query: 325 RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA-GLNFDVSIGNALMNMYSKCGS 383
              +I+P+ +T++A+LS+C+    ++ G  +   +    GL   +     + +++ + G 
Sbjct: 532 NNFQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGL 591

Query: 384 ITSSHQIFNEMAARDFVS-WTTLISGYGFHG---YGEEALQLFLEMQ 426
           +  + +I   M  +   + W TLI     H     GE A +  LEM+
Sbjct: 592 LNKAKEIIRNMPYKPTPAMWATLIGACRIHRNTEIGEWAAEKLLEMK 638


>gi|302766239|ref|XP_002966540.1| hypothetical protein SELMODRAFT_61257 [Selaginella moellendorffii]
 gi|300165960|gb|EFJ32567.1| hypothetical protein SELMODRAFT_61257 [Selaginella moellendorffii]
          Length = 630

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 167/532 (31%), Positives = 285/532 (53%), Gaps = 10/532 (1%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           N  ++ S + AC+ A+     G+ +H   L         +  +L++MYAK    E A  +
Sbjct: 99  NEMVIVSTLAACSGAKDLA-LGMAIHARILSPDLRKSVFVGTALLNMYAKCGAIEQARAV 157

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL 145
           FD++P++D +SW ++I  F Q G   ++LE    M               I+ CS    L
Sbjct: 158 FDQIPHKDVVSWTAMITAFAQMGDCRQALETLEGMIQARVQPNPVTFVAAITACSSREFL 217

Query: 146 ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISG 205
           + GR+IHA VI D      + +  AL+ +Y+K      AL VF++M  RN VSW +MI+ 
Sbjct: 218 DRGRKIHAAVI-DLGLHGDITIQNALVSMYAKGSSAEEALSVFQRMEDRNRVSWNSMIAA 276

Query: 206 CIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFD 265
              S      + LF  M  EG+KP  V+   VL AC+  R LR+ K IH           
Sbjct: 277 FAASAQSCAAMGLFHGMNLEGIKPDDVSFLGVLSACSSTRCLRSCKRIHSQLELAAVHSP 336

Query: 266 HHLSA--ALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSR 323
             LS   +L+  Y +C + L  A  IF+R   K+VV W++++  Y+  G+ S+A++L+ +
Sbjct: 337 PDLSVENSLVTAYAKCGD-LEAAERIFQRIPGKNVVSWTAMLTAYTFHGNGSKALELYDK 395

Query: 324 MRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS 383
           M  + I+P+SV LL ++ + +    +     +H  +  +     + I NAL+NMY++CGS
Sbjct: 396 MVGQSIQPDSVVLLNVIYAGSLVGDVGLARKLHARVASSSFMLKIQIQNALINMYTRCGS 455

Query: 384 ITSSHQIFN-----EMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
           +  + ++F+      + ARD V+W++L++GY  HG+ E A+ L+ +M   GV+PD++T +
Sbjct: 456 LEEARRVFDGIERKNLVARDTVTWSSLVAGYAHHGHAEYAILLYRDMHLEGVQPDSVTYV 515

Query: 439 AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPM 498
           +IL++C+HAGL+ +A   F +++++  +A   +H+ C VD+LG++G +  A  VV  MP 
Sbjct: 516 SILNSCSHAGLLAQARHFFVSMVEDHCLAAWPDHWKCMVDVLGRAGFVGRAEDVVRNMPF 575

Query: 499 KPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESG 550
           +P     ++L+  C++HG      + A   +   P  A +  LLS + +E G
Sbjct: 576 QPDVVAWNTLLGCCKVHGDARRGAVAARNAVGISPGFAGSTVLLSNMYAEIG 627



 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 149/496 (30%), Positives = 250/496 (50%), Gaps = 16/496 (3%)

Query: 65  ISNSLISMYAKFSKPES---AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           + N LI MY K     S   A  +FD+MP +D +SW+ II  + Q G    ++ +F+ M 
Sbjct: 36  LGNLLIQMYRKCGGTSSLADARAVFDQMPKKDVVSWSCIIAAYGQAGHCREAINLFQRMD 95

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
           +        ++   ++ CS   +L LG  IHA  I+      SVFV TALL++Y+KC   
Sbjct: 96  V---EPNEMVIVSTLAACSGAKDLALGMAIHAR-ILSPDLRKSVFVGTALLNMYAKCGAI 151

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             A  VF+Q+  ++ VSWTAMI+      +    ++    M +  V+P  VT    + AC
Sbjct: 152 EQARAVFDQIPHKDVVSWTAMITAFAQMGDCRQALETLEGMIQARVQPNPVTFVAAITAC 211

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           +    L  G+ IH      G   D  +  AL+ MY + + A   A  +F+R + ++ V W
Sbjct: 212 SSREFLDRGRKIHAAVIDLGLHGDITIQNALVSMYAKGSSA-EEALSVFQRMEDRNRVSW 270

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           +S+I  ++ S     AM LF  M LE I+P+ V+ L +LS+C+    L     +H  +  
Sbjct: 271 NSMIAAFAASAQSCAAMGLFHGMNLEGIKPDDVSFLGVLSACSSTRCLRSCKRIHSQLEL 330

Query: 362 AGLNF--DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEAL 419
           A ++   D+S+ N+L+  Y+KCG + ++ +IF  +  ++ VSWT +++ Y FHG G +AL
Sbjct: 331 AAVHSPPDLSVENSLVTAYAKCGDLEAAERIFQRIPGKNVVSWTAMLTAYTFHGNGSKAL 390

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479
           +L+ +M    ++PD++ +L ++ A +  G V  A  L   V       L I+     +++
Sbjct: 391 ELYDKMVGQSIQPDSVVLLNVIYAGSLVGDVGLARKLHARV-ASSSFMLKIQIQNALINM 449

Query: 480 LGKSGKIEDACKVVSTMPMKP----STRILSSLVSACRIHGRLEVAEMLAHQL-IEAEPE 534
             + G +E+A +V   +  K      T   SSLV+    HG  E A +L   + +E    
Sbjct: 450 YTRCGSLEEARRVFDGIERKNLVARDTVTWSSLVAGYAHHGHAEYAILLYRDMHLEGVQP 509

Query: 535 NAANYTLLSMVCSESG 550
           ++  Y  +   CS +G
Sbjct: 510 DSVTYVSILNSCSHAG 525



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 124/449 (27%), Positives = 229/449 (51%), Gaps = 24/449 (5%)

Query: 133 AGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKC---HHWLIALRVFE 189
           A ++  C     L  GR++H  ++  G F  SV +   L+ +Y KC        A  VF+
Sbjct: 2   ASLLRRCGISRSLADGRRVHDHILATGHFLRSVHLGNLLIQMYRKCGGTSSLADARAVFD 61

Query: 190 QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
           QM  ++ VSW+ +I+    + +    I+LF   QR  V+P  + +   L AC+  +DL  
Sbjct: 62  QMPKKDVVSWSCIIAAYGQAGHCREAINLF---QRMDVEPNEMVIVSTLAACSGAKDLAL 118

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
           G AIH             +  AL++MY +C  A+  AR +F++   KDVV W+++I  ++
Sbjct: 119 GMAIHARILSPDLRKSVFVGTALLNMYAKCG-AIEQARAVFDQIPHKDVVSWTAMITAFA 177

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
           Q GD  +A++    M   R++PN VT +A +++C+ + FL  G  +H  ++  GL+ D++
Sbjct: 178 QMGDCRQALETLEGMIQARVQPNPVTFVAAITACSSREFLDRGRKIHAAVIDLGLHGDIT 237

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
           I NAL++MY+K  S   +  +F  M  R+ VSW ++I+ +        A+ LF  M   G
Sbjct: 238 IQNALVSMYAKGSSAEEALSVFQRMEDRNRVSWNSMIAAFAASAQSCAAMGLFHGMNLEG 297

Query: 430 VEPDAITVLAILSACNHAGLVKEAETLFNNV---MKEKKIALAIEHYACYVDLLGKSGKI 486
           ++PD ++ L +LSAC+    ++  + + + +          L++E+    V    K G +
Sbjct: 298 IKPDDVSFLGVLSACSSTRCLRSCKRIHSQLELAAVHSPPDLSVEN--SLVTAYAKCGDL 355

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGR----LEVAEMLAHQLIEAEPENAANYTLL 542
           E A ++   +P K +    +++++A   HG     LE+ + +  Q I+ +     +  LL
Sbjct: 356 EAAERIFQRIPGK-NVVSWTAMLTAYTFHGNGSKALELYDKMVGQSIQPD-----SVVLL 409

Query: 543 SMVCSESGNWLGAEEVWRVMRAKGLSKSY 571
           +++   +G+ +G   + R + A+  S S+
Sbjct: 410 NVI--YAGSLVGDVGLARKLHARVASSSF 436


>gi|218186186|gb|EEC68613.1| hypothetical protein OsI_36980 [Oryza sativa Indica Group]
          Length = 981

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 176/561 (31%), Positives = 298/561 (53%), Gaps = 6/561 (1%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           GL  +   L S++  CA A    H G  +H   L+S  D+   + N+L++MY+   K   
Sbjct: 241 GLRPDATTLCSLMSVCASADHFSH-GSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSD 299

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A  LF  M  RD ISWN++I+ + QN     +L+   +++    +      +  +  CS 
Sbjct: 300 AEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNEIPNHLTFSSALGACSS 359

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
            G L  G+ +HA+V+   S + ++ V  +L+ +Y KC+    A +VF+ M   + VS+  
Sbjct: 360 PGALIDGKMVHAIVL-QLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDVVSYNV 418

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN-GKAIHGYAYCC 260
           +I G    ++    + +F  ++  G+KP  +T+  +  +     DL N G+ +H Y    
Sbjct: 419 LIGGYAVLEDGTKAMQVFSWIRSAGIKPNYITMINIHGSFTSSNDLHNYGRPLHAYIIRT 478

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
           GF  D +++ +L+ MY +C   L  +  IF     K++V W++II   +Q G   EA+KL
Sbjct: 479 GFLSDEYVANSLITMYAKCGN-LESSTNIFNSITNKNIVSWNAIIAANAQLGHGEEALKL 537

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
           F  M+    + + V L   LSSC   + L  G+ +H   MK+GL+ D  + NA M+MY K
Sbjct: 538 FIDMQHAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGK 597

Query: 381 CGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
           CG +    Q+  + A R    W TLISGY  +GY +EA + F +M   G +PD +T +A+
Sbjct: 598 CGKMNEMLQMVPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVAMGRKPDYVTFVAL 657

Query: 441 LSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKP 500
           LSAC+HAGLV +    +N++     ++  I+H  C VDLLG+ G+  +A + +  MP+ P
Sbjct: 658 LSACSHAGLVDKGIDYYNSMASSFGVSPGIKHCVCIVDLLGRLGRFAEAERFIEEMPVLP 717

Query: 501 STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWR 560
           +  I  SL+S+ R H  LE+    A +L+E +P + + Y LLS + + +  W+  +++  
Sbjct: 718 NDLIWRSLLSSSRTHKNLEIGRKAAKKLLELDPFDDSAYVLLSNLYATNARWVDVDKLRS 777

Query: 561 VMRAKGLSKSYGFS--RIENE 579
            M+   ++K    S  +++NE
Sbjct: 778 HMKTININKRPACSWLKLKNE 798



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 109/413 (26%), Positives = 200/413 (48%), Gaps = 4/413 (0%)

Query: 30  LPSVIKACAYAQTHQHF--GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFD 87
           L S++ AC      +    G  +H    ++G   +  I  +L+ +Y        A +LF 
Sbjct: 44  LASLVTACERRGRDEGIACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDARRLFW 103

Query: 88  EMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELEL 147
           EMP R+ +SW +++   + NG+   +L  +R+M   G    A   A ++SLC  +     
Sbjct: 104 EMPERNVVSWTALMVALSSNGYLEETLRAYRQMRREGVPCNANAFATVVSLCGSLENEVP 163

Query: 148 GRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCI 207
           G Q+ + VIV G  +  V V+ +L+ ++        A ++F++M   + +S  AMIS   
Sbjct: 164 GLQVASHVIVSG-LQNQVSVANSLITMFGNLGRVQDAEKLFDRMEEHDTISRNAMISMYS 222

Query: 208 DSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH 267
                     +F  M+  G++P   TL  ++  CA      +G  IH        D    
Sbjct: 223 HQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASADHFSHGSGIHSLCLRSSLDSSVT 282

Query: 268 LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
           +  AL++MY    + L  A  +F     +D++ W+++I  Y Q+ + ++A+K   ++   
Sbjct: 283 VINALVNMYSAAGK-LSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHT 341

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
              PN +T  + L +C+    L  G  VH  +++  L  ++ +GN+L+ MY KC S+  +
Sbjct: 342 NEIPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDA 401

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
            ++F  M   D VS+  LI GY     G +A+Q+F  ++ +G++P+ IT++ I
Sbjct: 402 EKVFQSMPTHDVVSYNVLIGGYAVLEDGTKAMQVFSWIRSAGIKPNYITMINI 454



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 114/415 (27%), Positives = 201/415 (48%), Gaps = 12/415 (2%)

Query: 89  MPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELE-- 146
           MP R   +W + ++   + G  V + E+ R M   G  L    LA +++ C + G  E  
Sbjct: 1   MPDRTPSTWYTAVSGCVRCGRDVAAFELLRGMRERGVPLSGFALASLVTACERRGRDEGI 60

Query: 147 -LGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISG 205
             G  IHAL    G    +V++ TALL LY        A R+F +M  RN VSWTA++  
Sbjct: 61  ACGAAIHALTHRAGLMG-NVYIGTALLHLYGSRGIVSDARRLFWEMPERNVVSWTALMVA 119

Query: 206 CIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFD 265
              +   +  +  +R M+REGV         V+  C  L +   G  +  +    G    
Sbjct: 120 LSSNGYLEETLRAYRQMRREGVPCNANAFATVVSLCGSLENEVPGLQVASHVIVSGLQNQ 179

Query: 266 HHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR 325
             ++ +L+ M+      +  A  +F+R +  D +  +++I  YS  G  S+   +FS MR
Sbjct: 180 VSVANSLITMFGNLGR-VQDAEKLFDRMEEHDTISRNAMISMYSHQGICSKCFLVFSDMR 238

Query: 326 LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSIT 385
              + P++ TL +++S C      SHG G+H   +++ L+  V++ NAL+NMYS  G ++
Sbjct: 239 HHGLRPDATTLCSLMSVCASADHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLS 298

Query: 386 SSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
            +  +F  M+ RD +SW T+IS Y  +    +AL+   ++  +   P+ +T  + L AC+
Sbjct: 299 DAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNEIPNHLTFSSALGACS 358

Query: 446 HAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
             G + + + +   V++   ++ + +        + + GK   +EDA KV  +MP
Sbjct: 359 SPGALIDGKMVHAIVLQLSLQRNLLVG----NSLITMYGKCNSMEDAEKVFQSMP 409


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 159/486 (32%), Positives = 265/486 (54%), Gaps = 4/486 (0%)

Query: 94  TISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHA 153
           +  WN+ +    +   ++++L ++ +M   G    A      +  C+ +    LG Q H 
Sbjct: 14  STPWNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHG 73

Query: 154 LVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE--VSWTAMISGCIDSQN 211
            +   G      FV T L+ +Y K      A +VFE+     +  V + A++SG + +  
Sbjct: 74  QITKVGCV-FEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSK 132

Query: 212 YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAA 271
               + LFR M  EGV    VTL  ++ AC    +L  G ++H      GFD D  +   
Sbjct: 133 CSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNC 192

Query: 272 LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP 331
            + MY +C  +++ A+ +F+   VK ++ W++++ GY+Q+G  +  ++L+  M +  + P
Sbjct: 193 FITMYMKCG-SVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHP 251

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIF 391
           + VTL+ +LSSC      S G  V   I  +G   +  + NAL+NMY++CG++T +  +F
Sbjct: 252 DPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVF 311

Query: 392 NEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVK 451
           + M  R  VSWT +I GYG HG+GE A+QLF EM  SG+EPD    + +LSAC+HAGL  
Sbjct: 312 DGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTD 371

Query: 452 EAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSA 511
           +    F  + +  ++    EHY+C VDLLG++G++++A  ++ +MP+KP   +  +L+ A
Sbjct: 372 QGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGA 431

Query: 512 CRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSY 571
           C+IH  +E+AE+   ++IE EPEN   Y LLS + S + N  G   +  +M+ K L K  
Sbjct: 432 CKIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDP 491

Query: 572 GFSRIE 577
           G S +E
Sbjct: 492 GCSYVE 497



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 137/486 (28%), Positives = 224/486 (46%), Gaps = 28/486 (5%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           Q L LY Q L   G   N    P  +K+CA A +    G Q H    K G   +P +   
Sbjct: 32  QALSLYPQMLR-HGDRPNAFTFPFALKSCA-ALSLPILGSQFHGQITKVGCVFEPFVQTG 89

Query: 69  LISMYAKFSKPESAYQLFDEMPY--RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           LISMY K S  ++A ++F+E  +  + T+ +N++++ +  N     ++ +FR+M   G  
Sbjct: 90  LISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEAVLLFRQMNEEGVP 149

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
           + +  L G+I  C     LELG  +H   +  G F+  V V    + +Y KC     A +
Sbjct: 150 VNSVTLLGLIPACVSPINLELGSSLHCSTLKYG-FDSDVSVVNCFITMYMKCGSVNYAQK 208

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           +F++M ++  +SW AM+SG   +      ++L+R M   GV P  VTL  VL +CA L  
Sbjct: 209 LFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGA 268

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
              G  +       GF  +  L+ AL++MY  C   L  A+ +F+    + +V W++II 
Sbjct: 269 QSVGHEVEFKIQASGFTSNPFLNNALINMYARCGN-LTKAQAVFDGMPERTLVSWTAIIG 327

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           GY   G    A++LF  M    IEP+    + +LS+C+       GL    Y      N+
Sbjct: 328 GYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLE---YFKMMKRNY 384

Query: 367 DVSIG----NALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFHGYGEEALQL 421
            +  G    + ++++  + G +  +  +   M  + D   W  L+     H   E A   
Sbjct: 385 QLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELA 444

Query: 422 FLEMQESGVEPDAITVLAILS-----ACNHAGLVKEAETLFNNVMKEKKIALAIEHYACY 476
           F  + E  +EP+ I    +LS     A N  G+++        +MKEKK  L  +    Y
Sbjct: 445 FERVIE--LEPENIGYYVLLSNIYSNANNSKGVLR-----IRIMMKEKK--LKKDPGCSY 495

Query: 477 VDLLGK 482
           V+L G+
Sbjct: 496 VELKGR 501



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 99/358 (27%), Positives = 169/358 (47%), Gaps = 16/358 (4%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           VS     + + L++Q ++  G+  N+  L  +I AC  +  +   G  LHC+ LK G D+
Sbjct: 128 VSNSKCSEAVLLFRQ-MNEEGVPVNSVTLLGLIPACV-SPINLELGSSLHCSTLKYGFDS 185

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D  + N  I+MY K      A +LFDEMP +  ISWN++++ + QNG     LE++R M 
Sbjct: 186 DVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMD 245

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
           + G       L G++S C+ +G   +G ++   +   G F  + F++ AL+++Y++C + 
Sbjct: 246 MNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASG-FTSNPFLNNALINMYARCGNL 304

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             A  VF+ M  R  VSWTA+I G     + +  + LF+ M R G++P       VL AC
Sbjct: 305 TKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSAC 364

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCEC-----TEALHPARIIFERTKVK 296
           +       G    G  Y      ++ L     H  C          L  A+ + E   +K
Sbjct: 365 SHA-----GLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIK 419

Query: 297 -DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGL 353
            D  +W +++       ++  A   F R+    +EP ++    +LS+    +  S G+
Sbjct: 420 PDGAVWGALLGACKIHKNVELAELAFERVI--ELEPENIGYYVLLSNIYSNANNSKGV 475


>gi|302766669|ref|XP_002966755.1| hypothetical protein SELMODRAFT_85926 [Selaginella moellendorffii]
 gi|300166175|gb|EFJ32782.1| hypothetical protein SELMODRAFT_85926 [Selaginella moellendorffii]
          Length = 811

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 171/538 (31%), Positives = 287/538 (53%), Gaps = 9/538 (1%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           Q L LY++ L  S    +T +L S I AC+ A+     G  +H        D    + N 
Sbjct: 111 QALELYQRFLSVSSEPPDTVMLLSAITACSSAEFLDD-GRAIHAQISSRELDHHTHLGNG 169

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           L++MY +  +   A + F+++  ++ +SWN II  + Q G    ++E+F+ M   G    
Sbjct: 170 LVNMYGRCKELHRARKAFEKITAKNLVSWNVIIGAYAQEGHRGHAMELFQRMDPEGVAAD 229

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
           A     ++  C  +      R+IH  + + G  E  VFV+++L++ Y KC     A RVF
Sbjct: 230 AVTFLHVLDACGGVEAAGDVRRIHKKLELSG-LEWDVFVASSLVNAYGKCGCLAEAKRVF 288

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
           + M ++N V+ T+M++        +  ++++R M+ +G K  RVT    L AC+ +  L 
Sbjct: 289 DTMPLKNTVTMTSMLAAYAQHGLGEEALEIYREMESQGRKADRVTFISALDACSSIGALS 348

Query: 249 NGKAIHGYAYCCGF--DFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
            G+AIH      G     D  L  AL++MY  C   L  A+ +F+    K+ + W++++ 
Sbjct: 349 QGRAIHSRLLVSGIIQQPDVVLGTALLNMYGRCG-VLDAAKSLFDGMADKNTITWNALMG 407

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
            Y+Q G   EA+ L+  M     +PNS+T LA+L++C+    L  G   H  +  AG   
Sbjct: 408 SYAQWGYGKEALNLYHSMD---AQPNSLTFLAMLTACSTVGALLQGRAAHARLAPAGFEK 464

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           +V +G AL+NMY KCGS+  +   F ++  +  V+WT  +     HG   E L+LF EM+
Sbjct: 465 EVEVGVALVNMYGKCGSLEDALGTFAKLERKTVVTWTVAMLALAHHGEFRETLRLFTEME 524

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
             GV PD++ +LA L AC+H+G +KE  + F N++++  ++  + HY C VDLL ++G +
Sbjct: 525 LDGVAPDSVALLAALFACSHSGKLKEGRSYFTNMIQDYGVSPTLAHYDCVVDLLCRTGLL 584

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRL-EVAEMLAHQLIEAEPENAANYTLLS 543
             A +++ +MP +PS    ++L++ACR H  L + A++ A + +E EP NA  Y  LS
Sbjct: 585 GRAEELIDSMPFEPSAVTWTTLLAACRTHSTLYDKAKVAADKALETEPHNAGIYFALS 642



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 121/456 (26%), Positives = 235/456 (51%), Gaps = 21/456 (4%)

Query: 54  ALKSGSDADPVISNSLISMYAKFSKPESAYQLFDE--MPYRDTISWNSIINCFTQNGFYV 111
           A+    + D +++ +L+ MY+K    + A ++FD+  +  +    W ++++ +  +G   
Sbjct: 51  AVAVAGEEDDLVATALVDMYSKCGSLDDARRVFDDYSVDSKRMALWTAMVSGYALHGHSR 110

Query: 112 RSLEMF-REMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELS--VFVS 168
           ++LE++ R + +        +L   I+ CS    L+ GR IHA +    S EL     + 
Sbjct: 111 QALELYQRFLSVSSEPPDTVMLLSAITACSSAEFLDDGRAIHAQI---SSRELDHHTHLG 167

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
             L+++Y +C     A + FE++  +N VSW  +I       +    ++LF+ M  EGV 
Sbjct: 168 NGLVNMYGRCKELHRARKAFEKITAKNLVSWNVIIGAYAQEGHRGHAMELFQRMDPEGVA 227

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
              VT   VL AC  +    + + IH      G ++D  ++++L++ Y +C   L  A+ 
Sbjct: 228 ADAVTFLHVLDACGGVEAAGDVRRIHKKLELSGLEWDVFVASSLVNAYGKCG-CLAEAKR 286

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
           +F+   +K+ V  +S++  Y+Q G   EA++++  M  +  + + VT ++ L +C+    
Sbjct: 287 VFDTMPLKNTVTMTSMLAAYAQHGLGEEALEIYREMESQGRKADRVTFISALDACSSIGA 346

Query: 349 LSHGLGVHCYIMKAGL--NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
           LS G  +H  ++ +G+    DV +G AL+NMY +CG + ++  +F+ MA ++ ++W  L+
Sbjct: 347 LSQGRAIHSRLLVSGIIQQPDVVLGTALLNMYGRCGVLDAAKSLFDGMADKNTITWNALM 406

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLV---KEAETLFNNVMKE 463
             Y   GYG+EAL L+  M     +P+++T LA+L+AC+  G +   + A         E
Sbjct: 407 GSYAQWGYGKEALNLYHSMD---AQPNSLTFLAMLTACSTVGALLQGRAAHARLAPAGFE 463

Query: 464 KKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           K++ + +      V++ GK G +EDA    + +  K
Sbjct: 464 KEVEVGV----ALVNMYGKCGSLEDALGTFAKLERK 495



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 135/472 (28%), Positives = 228/472 (48%), Gaps = 30/472 (6%)

Query: 120 MYLCGFVLKAELLAGIISLCSQIGE--LELGRQIH------------ALVIVDGSFELSV 165
           M L G    A  L   IS C+++G   L  GR++H              V V  + E   
Sbjct: 1   MDLEGVPRSASNLVSSISACARLGSAFLSQGRELHERYCQWWRRGGGGEVAVAVAGEEDD 60

Query: 166 FVSTALLDLYSKCHHWLIALRVFEQMVIRNE--VSWTAMISGCIDSQNYDTGIDLF-RAM 222
            V+TAL+D+YSKC     A RVF+   + ++    WTAM+SG     +    ++L+ R +
Sbjct: 61  LVATALVDMYSKCGSLDDARRVFDDYSVDSKRMALWTAMVSGYALHGHSRQALELYQRFL 120

Query: 223 QREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEA 282
                 P  V L   + AC+    L +G+AIH        D   HL   L++MY  C E 
Sbjct: 121 SVSSEPPDTVMLLSAITACSSAEFLDDGRAIHAQISSRELDHHTHLGNGLVNMYGRCKE- 179

Query: 283 LHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSS 342
           LH AR  FE+   K++V W+ II  Y+Q G    AM+LF RM  E +  ++VT L +L +
Sbjct: 180 LHRARKAFEKITAKNLVSWNVIIGAYAQEGHRGHAMELFQRMDPEGVAADAVTFLHVLDA 239

Query: 343 CTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSW 402
           C           +H  +  +GL +DV + ++L+N Y KCG +  + ++F+ M  ++ V+ 
Sbjct: 240 CGGVEAAGDVRRIHKKLELSGLEWDVFVASSLVNAYGKCGCLAEAKRVFDTMPLKNTVTM 299

Query: 403 TTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAET-----LF 457
           T++++ Y  HG GEEAL+++ EM+  G + D +T ++ L AC+  G + +        L 
Sbjct: 300 TSMLAAYAQHGLGEEALEIYREMESQGRKADRVTFISALDACSSIGALSQGRAIHSRLLV 359

Query: 458 NNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGR 517
           + ++++  + L        +++ G+ G ++ A  +   M  K +T   ++L+ +    G 
Sbjct: 360 SGIIQQPDVVLGT----ALLNMYGRCGVLDAAKSLFDGMADK-NTITWNALMGSYAQWGY 414

Query: 518 LEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSK 569
            + A  L H + +A+P N+  +  +   CS  G  L        +   G  K
Sbjct: 415 GKEALNLYHSM-DAQP-NSLTFLAMLTACSTVGALLQGRAAHARLAPAGFEK 464


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 182/581 (31%), Positives = 309/581 (53%), Gaps = 28/581 (4%)

Query: 10  TLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHF-GLQLHCTALKSGSDADPVISNS 68
           +L +   ++  +GL++    L  +I+ C  +    HF GL    +  ++  + + +I N+
Sbjct: 2   SLRMIHAQMIKTGLHNTNYALSKLIEFCVLSP---HFDGLPYAISVFETIQEPNLLIWNT 58

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSL---EMFRE------ 119
           +   +A  S P SA  L+  M     IS   + NC+T   F ++S    + FRE      
Sbjct: 59  MFRGHALSSDPVSALYLYVCM-----ISLGLLPNCYTFP-FLLKSCAKSKAFREGQQIHG 112

Query: 120 -MYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKC 178
            +   G+ L   +   +IS+  Q G LE  R++      D S    V   TAL+  Y+  
Sbjct: 113 HVLKLGYDLDLYVHTSLISMYVQNGRLEDARKV-----FDQSSHRDVVSYTALITGYASK 167

Query: 179 HHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVL 238
            +   A ++F+++ I++ VSW AMISG  ++ N    ++LF+ M +  V+P   T+  V+
Sbjct: 168 GYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVV 227

Query: 239 LACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDV 298
            ACA+   +  G+ +H +    GF  +  +  AL+ +Y +C E +  A  +FE    KDV
Sbjct: 228 SACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGE-VETACGLFEGLSYKDV 286

Query: 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCY 358
           + W+++I GY+      EA+ LF  M      PN VT+L+IL +C     +  G  +H Y
Sbjct: 287 ISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVY 346

Query: 359 IMK--AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGE 416
           I K   G+    S   +L++MY+KCG I ++ Q+F+ +  R   SW  +I G+  HG   
Sbjct: 347 INKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRAN 406

Query: 417 EALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACY 476
            A  +F  M+++ +EPD IT + +LSAC+H+G++     +F ++ ++ KI   +EHY C 
Sbjct: 407 AAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCM 466

Query: 477 VDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENA 536
           +DLLG SG  ++A ++++TM M+P   I  SL+ AC++HG +E+ E  A  LI+ EP+N 
Sbjct: 467 IDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPKNP 526

Query: 537 ANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +Y LLS + + +G W    ++  ++  KG+ K  G S IE
Sbjct: 527 GSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIE 567


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 175/561 (31%), Positives = 285/561 (50%), Gaps = 28/561 (4%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADP-VISNSLISMYAKFSKPESAYQLFDE 88
           L S++++    Q  +  G   H   +K+  +  P  I N L++MY+K  +P SA  L   
Sbjct: 9   LASLVESAVSTQCSR-LGRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSAQLLLSL 67

Query: 89  MPYRDTISWNSIINCFTQNGFYVRSLEMFREM-----------YLCGFVLKAELLAGIIS 137
            P R  ++W ++I    QNG +  +L  F  M           + C F     L + ++ 
Sbjct: 68  TPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLV- 126

Query: 138 LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197
                     G+Q+HAL +  G     VFV  +  D+YSK      A ++F++M  RN  
Sbjct: 127 ----------GKQVHALAVKAGQIS-DVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIA 175

Query: 198 SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
           +W A +S  +    YD  +  F   + EG +P  +T    L ACA    LR G+ +HG+ 
Sbjct: 176 TWNAYLSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLHGFV 235

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
              GF+ D  ++  L+  Y +C + +  + IIF      + V W S+I  Y Q+ +  +A
Sbjct: 236 LQSGFEADVSVANGLIDFYGKCHQ-VGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKA 294

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
             +F R R E IEP    + ++LS+C   S L  G  VH   +KA +  ++ +G+AL++M
Sbjct: 295 CLVFLRARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDM 354

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ--ESGVEPDAI 435
           Y KCGSI  + + F+EM  R+ V+W  +I GY   G  + A+ LF EM      V P+ +
Sbjct: 355 YGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYV 414

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           T + +LSAC+ AG V     +F ++     I    EHYAC VDLLG++G +E A + +  
Sbjct: 415 TFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKK 474

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGA 555
           MP++P+  +  +L+ A ++ G+ E+ ++ A  L E +P ++ N+ LLS + + +G W  A
Sbjct: 475 MPIRPTVSVWGALLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEA 534

Query: 556 EEVWRVMRAKGLSKSYGFSRI 576
             V + M+  G+ K  G S I
Sbjct: 535 TLVRKEMKDVGIKKGAGCSWI 555


>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 944

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 170/574 (29%), Positives = 298/574 (51%), Gaps = 7/574 (1%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           +++   L++Q      L  +     +++  C  A      G Q+H  A+K G D +  ++
Sbjct: 122 FDEAFKLFRQMCRSCTL-PDYVTFTTLLPGCNDAVPQNAVG-QVHAFAVKLGFDTNLFLT 179

Query: 67  --NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG 124
             N L+  Y +  + + A  LF+E+  +D++++N++I  + ++G Y  ++ +F +M   G
Sbjct: 180 VCNVLLKSYCEVRRLDLACVLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSG 239

Query: 125 FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
                   +G++     + +  LG+Q+H L +  G F     V   +L  YSK    L  
Sbjct: 240 HKPSDFTFSGVLKAVVGLHDFALGQQLHGLSVTTG-FSRDASVGNQILHFYSKHDRVLET 298

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
             +F +M   + VS+  +IS    ++ Y+  ++LFR MQ  G          +L   A L
Sbjct: 299 RNLFNEMPELDFVSYNVVISSYSQAEQYEESLNLFREMQCMGFDRRNFPFATMLSIAANL 358

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
             L+ G+ +H  A     D   H+  +L+ MY +C E    A +IF+    +  V W+++
Sbjct: 359 SSLQVGRQVHCQAIVATADSILHVGNSLVDMYAKC-EMFDEAELIFKSLSQRSTVSWTAL 417

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
           I GY Q G     +KLF++MR   +  +  T   +L +    + L  G  +H +I+++G 
Sbjct: 418 ISGYVQKGLHGAGLKLFTKMRGANLRADQSTFATVLKASAGFASLLLGKQLHAFIIRSGN 477

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
             +V  G+ L++MY+KCGSI  + Q+F EM  R+ VSW  LIS Y  +G GE A+  F +
Sbjct: 478 LENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAYADNGDGEAAIGAFTK 537

Query: 425 MQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSG 484
           M +SG++PD++++L +L AC+H G V++    F  +     I    +HYAC +DLLG++G
Sbjct: 538 MIQSGLQPDSVSILGVLIACSHCGFVEQGTEFFQAMSPIYGITPKKKHYACMLDLLGRNG 597

Query: 485 KIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEP-ENAANYTLLS 543
           +  +A K++  MP +P   + SS+++ACRI+    +AE  A QL   E   +AA Y  +S
Sbjct: 598 RFAEAEKLMDEMPFEPDEIMWSSVLNACRIYKNQSLAERAAEQLFSMEKLRDAAAYVSMS 657

Query: 544 MVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            + + +G W     V + MR +G+ K   +S +E
Sbjct: 658 NIYAAAGKWENVRHVKKAMRERGIKKVPAYSWVE 691



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 145/530 (27%), Positives = 247/530 (46%), Gaps = 28/530 (5%)

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM- 120
           + V +N++IS Y K     SA  LFD MP R  ++W  ++  +  N  +  + ++FR+M 
Sbjct: 74  NTVSTNTMISGYVKMGDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKLFRQMC 133

Query: 121 ---YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF--VSTALLDLY 175
               L  +V    LL G    C+         Q+HA  +  G F+ ++F  V   LL  Y
Sbjct: 134 RSCTLPDYVTFTTLLPG----CNDAVPQNAVGQVHAFAVKLG-FDTNLFLTVCNVLLKSY 188

Query: 176 SKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLT 235
            +     +A  +FE+++ ++ V++  +I+G      Y   I LF  M++ G KP+  T +
Sbjct: 189 CEVRRLDLACVLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFS 248

Query: 236 IVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV 295
            VL A   L D   G+ +HG +   GF  D  +   ++H Y +    L   R +F     
Sbjct: 249 GVLKAVVGLHDFALGQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLE-TRNLFNEMPE 307

Query: 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV 355
            D V ++ +I  YSQ+    E++ LF  M+    +  +     +LS     S L  G  V
Sbjct: 308 LDFVSYNVVISSYSQAEQYEESLNLFREMQCMGFDRRNFPFATMLSIAANLSSLQVGRQV 367

Query: 356 HCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGY---GFH 412
           HC  + A  +  + +GN+L++MY+KC     +  IF  ++ R  VSWT LISGY   G H
Sbjct: 368 HCQAIVATADSILHVGNSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYVQKGLH 427

Query: 413 GYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEH 472
           G G   L+LF +M+ + +  D  T   +L A      +   + L   +++   +      
Sbjct: 428 GAG---LKLFTKMRGANLRADQSTFATVLKASAGFASLLLGKQLHAFIIRSGNLENVFSG 484

Query: 473 YACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA- 531
            +  VD+  K G I+DA +V   MP + +    ++L+SA   +G  E A     ++I++ 
Sbjct: 485 -SGLVDMYAKCGSIKDAVQVFEEMPDRNAVS-WNALISAYADNGDGEAAIGAFTKMIQSG 542

Query: 532 -EPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIENEY 580
            +P++ +   +L + CS  G      E ++ M     S  YG +  +  Y
Sbjct: 543 LQPDSVSILGVL-IACSHCGFVEQGTEFFQAM-----SPIYGITPKKKHY 586



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 139/300 (46%), Gaps = 3/300 (1%)

Query: 145 LELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMIS 204
           L  G+   AL + D     +   +  ++  Y K      A  +F+ M  R  V+WT ++ 
Sbjct: 55  LRRGQVSAALKVYDEMPHKNTVSTNTMISGYVKMGDLSSARHLFDAMPDRTVVTWTILMG 114

Query: 205 GCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDF 264
               + ++D    LFR M R    P  VT T +L  C +         +H +A   GFD 
Sbjct: 115 WYAGNNHFDEAFKLFRQMCRSCTLPDYVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDT 174

Query: 265 DHHLSA--ALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFS 322
           +  L+    L+  YCE    L  A ++FE    KD V ++++I GY + G  +EA+ LF 
Sbjct: 175 NLFLTVCNVLLKSYCEVRR-LDLACVLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFL 233

Query: 323 RMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCG 382
           +MR    +P+  T   +L +       + G  +H   +  G + D S+GN +++ YSK  
Sbjct: 234 KMRQSGHKPSDFTFSGVLKAVVGLHDFALGQQLHGLSVTTGFSRDASVGNQILHFYSKHD 293

Query: 383 SITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILS 442
            +  +  +FNEM   DFVS+  +IS Y      EE+L LF EMQ  G +        +LS
Sbjct: 294 RVLETRNLFNEMPELDFVSYNVVISSYSQAEQYEESLNLFREMQCMGFDRRNFPFATMLS 353


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 167/571 (29%), Positives = 295/571 (51%), Gaps = 4/571 (0%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           +E+   L+++ L   G   N  +L +++K    A         +H  A K G D +  + 
Sbjct: 131 FEEAAGLFRR-LQREGHEVNHFVLTTILKVLV-AMDAPGLTCCIHACACKLGHDRNAFVG 188

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           +SLI  Y+       A  +FD + ++D ++W ++++C+++N     +L  F +M + G  
Sbjct: 189 SSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAK 248

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
               +L  ++     +    LG+ IH    V    +    V  ALLD+Y+KC +   A  
Sbjct: 249 PNPFVLTSVLKAAVCLSSAVLGKGIHGCA-VKTLCDTEPHVGGALLDMYAKCGYIEDART 307

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VFE +   + + W+ +IS    S   +   ++F  M R  V P   +L+ VL ACA +  
Sbjct: 308 VFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAF 367

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L  G+ IH      G++ +  +  ALM +Y +C   +  +  IF   +  + V W++II 
Sbjct: 368 LDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRN-MENSLEIFRSLRDANEVSWNTIIV 426

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           GY QSG   +A+ +F  MR   +    VT  ++L +C   + + H + +H  I K+  N 
Sbjct: 427 GYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNN 486

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           D  + N+L++ Y+KCG I  + ++F  +   D VSW  +ISGY  HG   +AL+LF  M 
Sbjct: 487 DTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHGRATDALELFNRMN 546

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
           +S  +P+ +T +A+LS C   GLV +  +LFN++  + +I  +++HY C V LLG++G++
Sbjct: 547 KSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCIVRLLGRAGRL 606

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546
            DA K +  +P  PS  +  +L+S+C +H  + + +  A +++E EP++   Y LLS + 
Sbjct: 607 NDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGKFSAEKVLEIEPQDETTYVLLSNMY 666

Query: 547 SESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           + +G       + + MR  G+ K  G S +E
Sbjct: 667 AAAGILDQVALLRKSMRNIGVKKEVGLSWVE 697



 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 149/516 (28%), Positives = 261/516 (50%), Gaps = 11/516 (2%)

Query: 40  AQTHQHFGLQLHCTALKSGSDA--DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISW 97
           A+     G  +H   ++ G  A  D   +N L+++YAK     +A +LFD MP R+ +S+
Sbjct: 59  ARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAARRLFDGMPERNMVSF 118

Query: 98  NSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIV 157
            +++  +   G +  +  +FR +   G  +   +L  I+ +   +    L   IHA    
Sbjct: 119 VTLVQGYALRGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVAMDAPGLTCCIHACACK 178

Query: 158 DGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGID 217
            G  + + FV ++L+D YS C     A  VF+ ++ ++ V+WTAM+S   ++   +  ++
Sbjct: 179 LG-HDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALN 237

Query: 218 LFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYC 277
            F  M+  G KP    LT VL A   L     GK IHG A     D + H+  AL+ MY 
Sbjct: 238 TFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYA 297

Query: 278 ECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLL 337
           +C   +  AR +FE     DV++WS +I  Y+QS    +A ++F RM    + PN  +L 
Sbjct: 298 KCGY-IEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLS 356

Query: 338 AILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR 397
            +L +C   +FL  G  +H  ++K G   ++ +GNALM++Y+KC ++ +S +IF  +   
Sbjct: 357 GVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDA 416

Query: 398 DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLF 457
           + VSW T+I GY   G+ E+AL +F EM+ + V    +T  ++L AC +   +K    + 
Sbjct: 417 NEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIH 476

Query: 458 NNVMKEKKIALAIEHYAC--YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIH 515
           + +   +K     +   C   +D   K G I DA KV  ++ ++      ++++S   +H
Sbjct: 477 SLI---EKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESI-IQCDVVSWNAIISGYALH 532

Query: 516 GRLEVAEMLAHQLIEAEPE-NAANYTLLSMVCSESG 550
           GR   A  L +++ +++ + N   +  L  VC  +G
Sbjct: 533 GRATDALELFNRMNKSDTKPNDVTFVALLSVCGSTG 568



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 97/331 (29%), Positives = 163/331 (49%), Gaps = 2/331 (0%)

Query: 133 AGIISLCSQIGELELGRQIHALVIVDGSF-ELSVFVSTALLDLYSKCHHWLIALRVFEQM 191
           A ++  C   G+   GR +HA V+  G   +L  F +  LL+LY+K      A R+F+ M
Sbjct: 51  ARLLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAARRLFDGM 110

Query: 192 VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGK 251
             RN VS+  ++ G      ++    LFR +QREG +     LT +L     +       
Sbjct: 111 PERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVAMDAPGLTC 170

Query: 252 AIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQS 311
            IH  A   G D +  + ++L+  Y  C    H AR +F+    KD V W++++  YS++
Sbjct: 171 CIHACACKLGHDRNAFVGSSLIDAYSLCGAVSH-ARCVFDGIIWKDAVTWTAMVSCYSEN 229

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
               +A+  FS+MR+   +PN   L ++L +    S    G G+H   +K   + +  +G
Sbjct: 230 DIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVG 289

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
            AL++MY+KCG I  +  +F  +   D + W+ LIS Y      E+A ++FL M  S V 
Sbjct: 290 GALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVV 349

Query: 432 PDAITVLAILSACNHAGLVKEAETLFNNVMK 462
           P+  ++  +L AC +   +   + + N V+K
Sbjct: 350 PNEFSLSGVLQACANVAFLDLGQQIHNLVIK 380


>gi|302790389|ref|XP_002976962.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
 gi|300155440|gb|EFJ22072.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
          Length = 1108

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 170/560 (30%), Positives = 294/560 (52%), Gaps = 10/560 (1%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD-ADPVISNSLISMYAKFSKP 79
           +G+  N     +++ AC+ ++    FG ++H   L    D  +  ++  L+SMY K    
Sbjct: 431 AGIDPNKVSFIAILNACSNSEALD-FGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSI 489

Query: 80  ESAYQLFDEMPY--RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS 137
             A  +F EMP   R  ++WN ++  + QN     +     EM   G +  A     ++S
Sbjct: 490 SEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTSVLS 549

Query: 138 LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197
            C    E ++ R    + I++  +  S  + TAL+ ++ +C     A  VF +M   + V
Sbjct: 550 SCYCSQEAQVLR----MCILESGYR-SACLETALISMHGRCRELEQARSVFNEMDHGDVV 604

Query: 198 SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
           SWTAM+S   +++++    +LFR MQ EGV P + TL   L  C     L  GK IH   
Sbjct: 605 SWTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLATTLDTCLASTTLGLGKVIHACV 664

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
              G + D  +  AL++MY  C +    A   FE  K +D+V W+ +   Y+Q+G   EA
Sbjct: 665 TEIGLEADIAVENALLNMYSNCGD-WREALSFFETMKARDLVSWNIMSAAYAQAGLAKEA 723

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
           + LF +M+LE ++P+ +T    L+     + +S G   H    ++GL+ DVS+   L+ +
Sbjct: 724 VLLFRQMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHALAAESGLDSDVSVATGLVKL 783

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           Y+KCG +  +  +F        V    +I     HG+ EEA+++F +MQ+ GV PD  T+
Sbjct: 784 YAKCGKLDEAMSLFRGACDWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPDVATL 843

Query: 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
           ++I+SAC HAG+V+E  + F  + +   I+  +EHYAC+VDLLG++G++E A +++  MP
Sbjct: 844 VSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACFVDLLGRAGQLEHAEQIIRKMP 903

Query: 498 MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEE 557
            + +T + +SL+  C++ G  E+ E  A +++E +P N+A + +LS +   +G W  A+ 
Sbjct: 904 FEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPHNSAAHVVLSNIYCATGKWKDADV 963

Query: 558 VWRVMRAKGLSKSYGFSRIE 577
             + M  + +  + G S  E
Sbjct: 964 DRKKMLDENVKNAPGMSWFE 983



 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 153/543 (28%), Positives = 255/543 (46%), Gaps = 19/543 (3%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           + L   G+  N+  L +++ A A +          H    +SG   D VI N++ISMYAK
Sbjct: 323 RRLRLEGMRPNSVTLITILNALAASGVDFGAARGFHGRIWESGYLRDVVIGNAIISMYAK 382

Query: 76  FSKPESAYQLFDEMPYR-DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAG 134
                +A+ +F  + ++ D ISWN+++        + + +  F  M L G          
Sbjct: 383 CGFFSAAWAVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIA 442

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI- 193
           I++ CS    L+ GR+IH+L++      +   V+T L+ +Y KC     A  VF++M + 
Sbjct: 443 ILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSISEAELVFKEMPLP 502

Query: 194 -RNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC---AELRDLRN 249
            R+ V+W  M+     +            M + GV P  ++ T VL +C    E + LR 
Sbjct: 503 SRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTSVLSSCYCSQEAQVLRM 562

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
                GY   C       L  AL+ M+  C E L  AR +F      DVV W++++   +
Sbjct: 563 CILESGYRSAC-------LETALISMHGRCRE-LEQARSVFNEMDHGDVVSWTAMVSATA 614

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
           ++ D  E   LF RM+LE + P+  TL   L +C   + L  G  +H  + + GL  D++
Sbjct: 615 ENRDFKEVHNLFRRMQLEGVIPDKFTLATTLDTCLASTTLGLGKVIHACVTEIGLEADIA 674

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
           + NAL+NMYS CG    +   F  M ARD VSW  + + Y   G  +EA+ LF +MQ  G
Sbjct: 675 VENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRQMQLEG 734

Query: 430 VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
           V+PD +T    L+    + LV + + LF+ +  E  +   +      V L  K GK+++A
Sbjct: 735 VKPDKLTFSTTLNVSGGSALVSDGK-LFHALAAESGLDSDVSVATGLVKLYAKCGKLDEA 793

Query: 490 CKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE--AEPENAANYTLLSMVCS 547
             +        +  +L++++ A   HG  E A  +  ++ +    P+ A   +++S  C 
Sbjct: 794 MSLFRG-ACDWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPDVATLVSIIS-ACG 851

Query: 548 ESG 550
            +G
Sbjct: 852 HAG 854



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 134/490 (27%), Positives = 246/490 (50%), Gaps = 20/490 (4%)

Query: 27  TAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLF 86
           TA+L S + +   A+     G   H     +G +    + N LI+MY +    E A+ +F
Sbjct: 29  TALLQSCVDSNDLAK-----GKHAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIF 83

Query: 87  DEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL-CGFVLKAELLAGIISLCSQIGEL 145
            +M  R+ +SW ++I+   Q G + R+  +FR M L       +  L  +++ C+   +L
Sbjct: 84  SKMEERNVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDL 143

Query: 146 ELGRQIHALVI---VDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAM 202
            +GR IHA++    ++ +   +  V  A++++Y+KC     A+ VF  +  ++ VSWTAM
Sbjct: 144 AIGRSIHAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVVSWTAM 203

Query: 203 ISGCIDSQN-YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
                  +  Y   + +FR M  + + P  +T    L AC  LRD   G  +H   +   
Sbjct: 204 AGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACTSLRD---GTWLHSLLHEAS 260

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVK---DVVIWSSIIRGYSQSGDLSEAM 318
             FD   S AL++MY +C +    A  +F+    +   D+V W+++I    ++G   +AM
Sbjct: 261 LGFDPLASNALINMYGKCGD-WEGAYSVFKAMASRQELDLVSWNAMISASVEAGRHGDAM 319

Query: 319 KLFSRMRLERIEPNSVTLLAILSSCTRQSF-LSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
            +F R+RLE + PNSVTL+ IL++            G H  I ++G   DV IGNA+++M
Sbjct: 320 AIFRRLRLEGMRPNSVTLITILNALAASGVDFGAARGFHGRIWESGYLRDVVIGNAIISM 379

Query: 378 YSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAIT 436
           Y+KCG  +++  +F  +  + D +SW T++          + +  F  M  +G++P+ ++
Sbjct: 380 YAKCGFFSAAWAVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVS 439

Query: 437 VLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
            +AIL+AC+++  +     + + ++  ++  +        V + GK G I +A  V   M
Sbjct: 440 FIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSISEAELVFKEM 499

Query: 497 PMKPSTRILS 506
           P+ PS  +++
Sbjct: 500 PL-PSRSLVT 508


>gi|449455116|ref|XP_004145299.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 722

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 178/572 (31%), Positives = 309/572 (54%), Gaps = 6/572 (1%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E+TL +Y+Q +  S ++ +    P V+++C+ + ++  FG  +H   +K G D   V++ 
Sbjct: 107 ERTLLVYQQMVAKS-MHPDEETYPFVLRSCS-SFSNVGFGRTIHGYLVKLGFDLFDVVAT 164

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +L  MY +  + E+A+QLFD+   +D    +S+     QN        +F  M     V 
Sbjct: 165 ALAEMYEECIEFENAHQLFDKRSVKDLGWPSSLTTEGPQNDNGEGIFRVFGRMIAEQLVP 224

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
            +     ++   + +  ++L + +H + IV       + V+TA+L LYSK    + A ++
Sbjct: 225 DSFTFFNLLRFIAGLNSIQLAKIVHCIAIV-SKLSGDLLVNTAVLSLYSKLRSLVDARKL 283

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F++M  ++ V W  MI+           ++LF++M R G++    T   V+ + A+L+ +
Sbjct: 284 FDKMPEKDRVVWNIMIAAYAREGKPTECLELFKSMARSGIRSDLFTALPVISSIAQLKCV 343

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
             GK  H +    G D    +  +L+ MYCEC + L  A  IF     K V+ WS++I+G
Sbjct: 344 DWGKQTHAHILRNGSDSQVSVHNSLIDMYCEC-KILDSACKIFNWMTDKSVISWSAMIKG 402

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
           Y ++G    A+ LFS+M+ + I+ + V ++ IL +      L +   +H Y MK GL   
Sbjct: 403 YVKNGQSLTALSLFSKMKSDGIQADFVIMINILPAFVHIGALENVKYLHGYSMKLGLTSL 462

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNE--MAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            S+  AL+  Y+KCGSI  + ++F E  +  +D + W ++IS +  HG   +  +L+  M
Sbjct: 463 PSLNTALLITYAKCGSIEMAQRLFEEEKIDDKDLIMWNSMISAHANHGDWSQCFKLYNRM 522

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
           + S  +PD +T L +L+AC ++GLV++ +  F  + +      + EHYAC V+LLG++G 
Sbjct: 523 KCSNSKPDQVTFLGLLTACVNSGLVEKGKEFFKEMTESYGCQPSQEHYACMVNLLGRAGL 582

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV 545
           I +A ++V  MP+KP  R+   L+SAC++H   ++AE  A +LI  EP NA NY LLS +
Sbjct: 583 ISEAGELVKNMPIKPDARVWGPLLSACKMHPGSKLAEFAAEKLINMEPRNAGNYILLSNI 642

Query: 546 CSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            + +G W G  ++   +R KGL K  G S +E
Sbjct: 643 YAAAGKWDGVAKMRSFLRNKGLKKIPGCSWLE 674



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 139/543 (25%), Positives = 259/543 (47%), Gaps = 19/543 (3%)

Query: 44  QHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINC 103
           QH   Q+H   +  G   +P +S+ LI  YA       + Q+F  +   +   +N+I+  
Sbjct: 41  QHLQ-QIHARFILHGFHQNPTLSSKLIDCYANLGLLNHSLQVFCSVIDPNLTLFNAILRN 99

Query: 104 FTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFEL 163
            T+ G   R+L ++++M         E    ++  CS    +  GR IH  ++  G F+L
Sbjct: 100 LTRYGESERTLLVYQQMVAKSMHPDEETYPFVLRSCSSFSNVGFGRTIHGYLVKLG-FDL 158

Query: 164 SVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQ 223
              V+TAL ++Y +C  +  A ++F++  ++ ++ W + ++   +    D G  +FR   
Sbjct: 159 FDVVATALAEMYEECIEFENAHQLFDKRSVK-DLGWPSSLT--TEGPQNDNGEGIFRVFG 215

Query: 224 R---EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECT 280
           R   E + P   T   +L   A L  ++  K +H  A       D  ++ A++ +Y +  
Sbjct: 216 RMIAEQLVPDSFTFFNLLRFIAGLNSIQLAKIVHCIAIVSKLSGDLLVNTAVLSLYSKL- 274

Query: 281 EALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAIL 340
            +L  AR +F++   KD V+W+ +I  Y++ G  +E ++LF  M    I  +  T L ++
Sbjct: 275 RSLVDARKLFDKMPEKDRVVWNIMIAAYAREGKPTECLELFKSMARSGIRSDLFTALPVI 334

Query: 341 SSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFV 400
           SS  +   +  G   H +I++ G +  VS+ N+L++MY +C  + S+ +IFN M  +  +
Sbjct: 335 SSIAQLKCVDWGKQTHAHILRNGSDSQVSVHNSLIDMYCECKILDSACKIFNWMTDKSVI 394

Query: 401 SWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNV 460
           SW+ +I GY  +G    AL LF +M+  G++ D + ++ IL A  H G ++  + L    
Sbjct: 395 SWSAMIKGYVKNGQSLTALSLFSKMKSDGIQADFVIMINILPAFVHIGALENVKYLHGYS 454

Query: 461 MKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRIL-SSLVSACRIHGRLE 519
           MK    +L   + A  +    K G IE A ++     +     I+ +S++SA   HG   
Sbjct: 455 MKLGLTSLPSLNTALLIT-YAKCGSIEMAQRLFEEEKIDDKDLIMWNSMISAHANHGDWS 513

Query: 520 VAEMLAHQLI--EAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
               L +++    ++P+      LL+  C  SG     +E ++ M     ++SYG    +
Sbjct: 514 QCFKLYNRMKCSNSKPDQVTFLGLLT-ACVNSGLVEKGKEFFKEM-----TESYGCQPSQ 567

Query: 578 NEY 580
             Y
Sbjct: 568 EHY 570



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 178/368 (48%), Gaps = 6/368 (1%)

Query: 132 LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM 191
           L+ + S C+ I  L+   QIHA  I+ G F  +  +S+ L+D Y+       +L+VF  +
Sbjct: 30  LSLLFSRCNSIQHLQ---QIHARFILHG-FHQNPTLSSKLIDCYANLGLLNHSLQVFCSV 85

Query: 192 VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGK 251
           +  N   + A++         +  + +++ M  + + P   T   VL +C+   ++  G+
Sbjct: 86  IDPNLTLFNAILRNLTRYGESERTLLVYQQMVAKSMHPDEETYPFVLRSCSSFSNVGFGR 145

Query: 252 AIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQS 311
            IHGY    GFD    ++ AL  MY EC E    A  +F++  VKD+   SS+     Q+
Sbjct: 146 TIHGYLVKLGFDLFDVVATALAEMYEECIE-FENAHQLFDKRSVKDLGWPSSLTTEGPQN 204

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
            +     ++F RM  E++ P+S T   +L      + +     VHC  + + L+ D+ + 
Sbjct: 205 DNGEGIFRVFGRMIAEQLVPDSFTFFNLLRFIAGLNSIQLAKIVHCIAIVSKLSGDLLVN 264

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
            A++++YSK  S+  + ++F++M  +D V W  +I+ Y   G   E L+LF  M  SG+ 
Sbjct: 265 TAVLSLYSKLRSLVDARKLFDKMPEKDRVVWNIMIAAYAREGKPTECLELFKSMARSGIR 324

Query: 432 PDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACK 491
            D  T L ++S+      V   +    ++++    +    H +  +D+  +   ++ ACK
Sbjct: 325 SDLFTALPVISSIAQLKCVDWGKQTHAHILRNGSDSQVSVHNS-LIDMYCECKILDSACK 383

Query: 492 VVSTMPMK 499
           + + M  K
Sbjct: 384 IFNWMTDK 391



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 104/211 (49%), Gaps = 8/211 (3%)

Query: 233 TLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFER 292
           TL+++   C  ++ L+    IH      GF  +  LS+ L+  Y       H  ++ F  
Sbjct: 29  TLSLLFSRCNSIQHLQQ---IHARFILHGFHQNPTLSSKLIDCYANLGLLNHSLQV-FCS 84

Query: 293 TKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHG 352
               ++ ++++I+R  ++ G+    + ++ +M  + + P+  T   +L SC+  S +  G
Sbjct: 85  VIDPNLTLFNAILRNLTRYGESERTLLVYQQMVAKSMHPDEETYPFVLRSCSSFSNVGFG 144

Query: 353 LGVHCYIMKAGLN-FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGF 411
             +H Y++K G + FDV +  AL  MY +C    ++HQ+F++ + +D + W + ++  G 
Sbjct: 145 RTIHGYLVKLGFDLFDV-VATALAEMYEECIEFENAHQLFDKRSVKD-LGWPSSLTTEGP 202

Query: 412 HG-YGEEALQLFLEMQESGVEPDAITVLAIL 441
               GE   ++F  M    + PD+ T   +L
Sbjct: 203 QNDNGEGIFRVFGRMIAEQLVPDSFTFFNLL 233


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 180/580 (31%), Positives = 300/580 (51%), Gaps = 33/580 (5%)

Query: 30  LPSVIKACAYAQTHQH-FGLQLHCTALKSG---SDADPVISNSLISMYAKFSKPESAYQL 85
           L SV+ AC++     H  G + H  ALK G      +    N+L+SMYA+    + A +L
Sbjct: 155 LVSVLLACSHLADQGHRLGREAHAFALKHGFLDKGRERFPFNALLSMYARLGLVDDAQRL 214

Query: 86  F--DEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIG 143
           F        D ++WN++I+   Q G    ++++  +M   G        A  +  CS++ 
Sbjct: 215 FFSSGAGVGDLVTWNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLE 274

Query: 144 ELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI--RNEVSWTA 201
            L +GR++HA V+ D     + FV++AL+D+Y+       A RVF+ +    R    W A
Sbjct: 275 LLGVGREVHAFVLKDDDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNA 334

Query: 202 MISGCIDSQNYDT-GIDLFRAMQRE-GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
           MI G       D   I+LF  M+ E G  P+  T+  VL ACA        +A+HGY   
Sbjct: 335 MICGYAQHGGMDEEAIELFSRMEAEAGCAPSETTMAGVLPACARSEVFTGKEAVHGYVVK 394

Query: 260 CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMK 319
                +  +  ALM MY      +  A  IF    ++D+V W+++I G    G +SEA +
Sbjct: 395 RDMASNRFVQNALMDMYARLGR-MDEAHTIFAMIDLRDIVSWNTLITGCIVQGLISEAFQ 453

Query: 320 LFSRMRL--------------------ERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
           L   M+L                    +R  PN++TL+ +L  C   +  + G  +H Y 
Sbjct: 454 LVREMQLPSSAASGETMLEGDDTSVDGQRCMPNNITLMTLLPGCAVLAAPARGKEIHGYA 513

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEAL 419
           ++  L  D+++G+AL++MY+KCG +  +  +F+ +  R+ ++W  LI  YG HG G+EAL
Sbjct: 514 VRHALESDLAVGSALVDMYAKCGCLALARAVFDRLPRRNVITWNVLIMAYGMHGLGDEAL 573

Query: 420 QLFLEMQESG-VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVD 478
            LF  M  +G   P+ +T +A L+AC+H+GLV     LF  + ++         +AC VD
Sbjct: 574 ALFDRMVANGEATPNEVTFIAALAACSHSGLVDRGLELFQGMKRDYGFEPTPYLHACVVD 633

Query: 479 LLGKSGKIEDACKVVSTM-PMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAA 537
           +LG++G++++A  ++S+M P +      S+++ ACR+H  +++  + A +L E EP+ A+
Sbjct: 634 VLGRAGRLDEAYGIISSMAPGEHQVSAWSTMLGACRLHRNVKLGRIAAERLFELEPDEAS 693

Query: 538 NYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +Y LL  + S +G W  + EV  +MR +G++K  G S IE
Sbjct: 694 HYVLLCNIYSAAGLWENSTEVRGMMRQRGVAKEPGCSWIE 733



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 156/585 (26%), Positives = 266/585 (45%), Gaps = 55/585 (9%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSG--SDADPVISNSLISMYAKFSKPESAYQLFD 87
           LP  IK+ A A         +H  +L+        P +SN+L++ YA+    ++A  LF 
Sbjct: 51  LPPAIKSAA-ALRDSRSTRAIHGASLRRALLHRPTPAVSNALLTAYARCGDLDAALALFA 109

Query: 88  EMP--YRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL 145
             P   RD +S+NS+I+       +  +L+  R+M L    + +  L  ++  CS + + 
Sbjct: 110 ATPPDLRDAVSYNSLISALCLFRRWGHALDALRDM-LADHEVSSFTLVSVLLACSHLADQ 168

Query: 146 --ELGRQIHALVIVDGSFE--LSVFVSTALLDLYSKCHHWLIALRVF--EQMVIRNEVSW 199
              LGR+ HA  +  G  +     F   ALL +Y++      A R+F      + + V+W
Sbjct: 169 GHRLGREAHAFALKHGFLDKGRERFPFNALLSMYARLGLVDDAQRLFFSSGAGVGDLVTW 228

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259
             MIS  +     +  + +   M   GV+P  VT    L AC+ L  L  G+ +H +   
Sbjct: 229 NTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVHAFVLK 288

Query: 260 -CGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV--KDVVIWSSIIRGYSQSGDLS- 315
                 +  +++AL+ MY    +  H AR +F+      + + +W+++I GY+Q G +  
Sbjct: 289 DDDLAANSFVASALVDMYASNEQVSH-ARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDE 347

Query: 316 EAMKLFSRMRLER-IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
           EA++LFSRM  E    P+  T+  +L +C R    +    VH Y++K  +  +  + NAL
Sbjct: 348 EAIELFSRMEAEAGCAPSETTMAGVLPACARSEVFTGKEAVHGYVVKRDMASNRFVQNAL 407

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ-------- 426
           M+MY++ G +  +H IF  +  RD VSW TLI+G    G   EA QL  EMQ        
Sbjct: 408 MDMYARLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQGLISEAFQLVREMQLPSSAASG 467

Query: 427 ESGVE------------PDAITVLAILSACNHAGLVKEAETLFNNVMK---EKKIALAIE 471
           E+ +E            P+ IT++ +L  C         + +    ++   E  +A+   
Sbjct: 468 ETMLEGDDTSVDGQRCMPNNITLMTLLPGCAVLAAPARGKEIHGYAVRHALESDLAVG-- 525

Query: 472 HYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLI-- 529
             +  VD+  K G +  A  V   +P + +    + L+ A  +HG  + A  L  +++  
Sbjct: 526 --SALVDMYAKCGCLALARAVFDRLPRR-NVITWNVLIMAYGMHGLGDEALALFDRMVAN 582

Query: 530 -EAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGF 573
            EA P N   +      CS SG      E++     +G+ + YGF
Sbjct: 583 GEATP-NEVTFIAALAACSHSGLVDRGLELF-----QGMKRDYGF 621


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 171/557 (30%), Positives = 300/557 (53%), Gaps = 7/557 (1%)

Query: 23  LYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGS-DADPVISNSLISMYAKFS-KPE 80
           +Y N     +++++C+        GL +    LK+G  D+   +  +LI M+ K     +
Sbjct: 141 IYPNEYCFTALLRSCSNPLFFTT-GLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQ 199

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
           SA  +FD+M +++ ++W  +I  ++Q G    ++++F  + +  +      L  ++S C 
Sbjct: 200 SARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACV 259

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
           ++    LG+Q+H+ VI  G     VFV   L+D+Y+K      + ++F  M+  N +SWT
Sbjct: 260 ELEFFSLGKQLHSWVIRSG-LASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWT 318

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
           A+ISG + S+     I LF  M    V P   T + VL ACA L D   GK +HG     
Sbjct: 319 ALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKL 378

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
           G    + +  +L++MY   +  +  AR  F     K+++ +++     +++ D  E+   
Sbjct: 379 GLSTINCVGNSLINMYAR-SGTMECARKAFNILFEKNLISYNTAADANAKALDSDESFN- 436

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
              +    +  +  T   +LS       +  G  +H  I+K+G   ++ I NAL++MYSK
Sbjct: 437 -HEVEHTGVGASPFTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCINNALISMYSK 495

Query: 381 CGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
           CG+  ++ Q+FN+M  R+ ++WT++ISG+  HG+  +AL+LF EM E GV+P+ +T +A+
Sbjct: 496 CGNKEAALQVFNDMGYRNVITWTSIISGFAKHGFATKALELFYEMLEIGVKPNEVTYIAV 555

Query: 441 LSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKP 500
           LSAC+H GL+ EA   FN++     I+  +EHYAC VDLLG+SG + +A + +++MP   
Sbjct: 556 LSACSHVGLIDEAWKHFNSMHYNHSISPRMEHYACMVDLLGRSGLLLEAIEFINSMPFDA 615

Query: 501 STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWR 560
              +  + + +CR+H   ++ E  A +++E EP + A Y LLS + +  G W     + +
Sbjct: 616 DALVWRTFLGSCRVHRNTKLGEHAAKKILEREPHDPATYILLSNLYASEGRWDDVAALRK 675

Query: 561 VMRAKGLSKSYGFSRIE 577
            M+ K L K  G+S IE
Sbjct: 676 SMKQKKLIKETGYSWIE 692



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 149/536 (27%), Positives = 250/536 (46%), Gaps = 18/536 (3%)

Query: 33  VIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPY- 91
           ++KAC  +   +  G  LH   + SG   D V+ NSLI++Y+K    E+A  +F  M + 
Sbjct: 45  LLKACIRSGNLE-LGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHH 103

Query: 92  -RDTISWNSIINCFTQNGFYVRSLEMFREMYLC--GFVLKAEL-LAGIISLCSQIGELEL 147
            RD +SW++II+CF  N    R+L  F  M  C    +   E     ++  CS       
Sbjct: 104 KRDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTT 163

Query: 148 GRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR-VFEQMVIRNEVSWTAMISGC 206
           G  I A ++  G F+  V V  AL+D+++K    + + R VF++M  +N V+WT MI+  
Sbjct: 164 GLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRY 223

Query: 207 IDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDH 266
                 D  +DLF  +      P + TLT +L AC EL     GK +H +    G   D 
Sbjct: 224 SQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDV 283

Query: 267 HLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRL 326
            +   L+ MY + + A+  +R IF      +V+ W+++I GY QS    EA+KLF  M  
Sbjct: 284 FVGCTLVDMYAK-SAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLH 342

Query: 327 ERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITS 386
             + PN  T  ++L +C        G  +H   +K GL+    +GN+L+NMY++ G++  
Sbjct: 343 GHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLGLSTINCVGNSLINMYARSGTMEC 402

Query: 387 SHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH 446
           + + FN +  ++ +S+ T           +E+     E++ +GV     T   +LS    
Sbjct: 403 ARKAFNILFEKNLISYNTAADANAKALDSDESFN--HEVEHTGVGASPFTYACLLSGAAC 460

Query: 447 AGLVKEAETLFNNVMKEK-KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRIL 505
            G + + E +   ++K      L I +    + +  K G  E A +V + M  + +    
Sbjct: 461 IGTIVKGEQIHALIVKSGFGTNLCINN--ALISMYSKCGNKEAALQVFNDMGYR-NVITW 517

Query: 506 SSLVSACRIHGRLEVAEMLAHQLIE-AEPENAANYTLLSMVCSESGNWLGAEEVWR 560
           +S++S    HG    A  L ++++E     N   Y  +   CS  G     +E W+
Sbjct: 518 TSIISGFAKHGFATKALELFYEMLEIGVKPNEVTYIAVLSACSHVG---LIDEAWK 570



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 91/200 (45%), Gaps = 9/200 (4%)

Query: 308 YSQSGDLS-EAM-KLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
           Y Q+ DL  E++ K  SR+ L    P   + L +L +C R   L  G  +H  ++ +GL 
Sbjct: 13  YLQAKDLKFESLRKAISRLDLTTTSPLIKSSL-LLKACIRSGNLELGKLLHHKLIDSGLP 71

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMA--ARDFVSWTTLISGYGFHGYGEEALQLFL 423
            D  + N+L+ +YSKCG   ++  IF  M    RD VSW+ +IS +  +     AL  FL
Sbjct: 72  LDSVLLNSLITLYSKCGDWENALSIFRNMGHHKRDLVSWSAIISCFANNSMESRALLTFL 131

Query: 424 EMQESG---VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLL 480
            M +     + P+     A+L +C++         +F  ++K       +      +D+ 
Sbjct: 132 HMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMF 191

Query: 481 GKSG-KIEDACKVVSTMPMK 499
            K G  I+ A  V   M  K
Sbjct: 192 TKGGLDIQSARMVFDKMQHK 211


>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
 gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
          Length = 538

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 169/511 (33%), Positives = 272/511 (53%), Gaps = 28/511 (5%)

Query: 80  ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLC 139
           E+A+++FD++P  +   WN++   ++QN  +   + +FR+M     +        I+  C
Sbjct: 2   ENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKSC 61

Query: 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSW 199
            +I  L+ G ++H  VI  G F  + FV+T L+D+Y+       A RVF +M+ RN ++W
Sbjct: 62  VKINALKEGEEVHCFVIKSG-FRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAW 120

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTR--VTLTIVLLACAELRDLRNGKAIHGYA 257
           TAMI+G      Y T  DL  A +   + P R  V    ++    E +D+   + +    
Sbjct: 121 TAMING------YITCCDLVTARRLFDLAPERDIVLWNTMISGYIEAKDVIRAREL---- 170

Query: 258 YCCGFDFDHHLSAALM------HMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQS 311
                 FD   +  +M      + Y    + +   R +FE    ++V  W+++I GY+++
Sbjct: 171 ------FDKMPNKDVMSWNTVLNGYASNGDVMACER-LFEEMPERNVFSWNALIGGYTRN 223

Query: 312 GDLSEAMKLFSRMRLE-RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSI 370
           G  SE +  F RM ++  + PN  TL+ +LS+C R   L  G  VH Y    G   +V +
Sbjct: 224 GCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYV 283

Query: 371 GNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV 430
            NALM+MY+KCG + ++  +F  M  +D +SW T+I G   HG+G +AL LF  M+ +G 
Sbjct: 284 RNALMDMYAKCGVVETALDVFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGE 343

Query: 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDAC 490
            PD IT + IL AC H GLV++  + F ++  +  I   IEHY C VDLLG++G +  A 
Sbjct: 344 NPDGITFIGILCACTHMGLVEDGFSYFKSMTDDYSIVPRIEHYGCIVDLLGRAGLLAHAV 403

Query: 491 KVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESG 550
             +  MP++    I ++L+ ACR++  +E+AE+   +LIE EP+N ANY +LS +  + G
Sbjct: 404 DFIRKMPIEADAVIWAALLGACRVYKNVELAELALEKLIEFEPKNPANYVMLSNIYGDFG 463

Query: 551 NWLGAEEVWRVMRAKGLSKSYGFSRIE-NEY 580
            W     +   MR  G  K  G S IE N+Y
Sbjct: 464 RWKDVARLKVAMRDTGFKKLPGCSLIEVNDY 494



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 128/494 (25%), Positives = 217/494 (43%), Gaps = 54/494 (10%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           ++  + L++Q +    +  N    P ++K+C      +  G ++HC  +KSG  A+P ++
Sbjct: 32  HKDVIVLFRQ-MKGLDVMPNCFTFPVILKSCVKINALKE-GEEVHCFVIKSGFRANPFVA 89

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
            +LI MYA      +AY++F EM  R+ I+W ++IN +      V +  +F        V
Sbjct: 90  TTLIDMYASGGAIHAAYRVFGEMIERNVIAWTAMINGYITCCDLVTARRLFDLAPERDIV 149

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
           L   +++G I         E    I A  + D      V     +L+ Y+     +   R
Sbjct: 150 LWNTMISGYI---------EAKDVIRARELFDKMPNKDVMSWNTVLNGYASNGDVMACER 200

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG-VKPTRVTLTIVLLACAELR 245
           +FE+M  RN  SW A+I G   +  +   +  F+ M  +G V P   TL  VL ACA L 
Sbjct: 201 LFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACARLG 260

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
            L  GK +H YA   G+  + ++  ALM MY +C   +  A  +F+    KD++ W++II
Sbjct: 261 ALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCG-VVETALDVFKSMDNKDLISWNTII 319

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
            G +  G  ++A+ LFS M++    P+ +T + IL +CT    +  G             
Sbjct: 320 GGLAVHGHGADALNLFSHMKIAGENPDGITFIGILCACTHMGLVEDG------------- 366

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
                       +S   S+T  + I   +       +  ++   G  G    A+    +M
Sbjct: 367 ------------FSYFKSMTDDYSIVPRIE-----HYGCIVDLLGRAGLLAHAVDFIRKM 409

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYV---DLLGK 482
               +E DA+   A+L AC     V+ AE        EK I    ++ A YV   ++ G 
Sbjct: 410 P---IEADAVIWAALLGACRVYKNVELAELAL-----EKLIEFEPKNPANYVMLSNIYGD 461

Query: 483 SGKIEDACKVVSTM 496
            G+ +D  ++   M
Sbjct: 462 FGRWKDVARLKVAM 475


>gi|356504054|ref|XP_003520814.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240-like [Glycine max]
          Length = 563

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 157/489 (32%), Positives = 269/489 (55%), Gaps = 10/489 (2%)

Query: 97  WNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVI 156
           WNS+I  F  +     S+ ++R+M   G+         ++  C  I + + G+ IH+ ++
Sbjct: 72  WNSMIRGFVNSHNPRMSMLLYRQMIENGYSPDHFTFPFVLKACCVIADQDCGKCIHSCIV 131

Query: 157 VDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGI 216
             G FE   + +T LL +Y  C      L+VF+ +   N V+WT +I+G + +      +
Sbjct: 132 KSG-FEADAYTATGLLHMYVSCADMKSGLKVFDNIPKWNVVAWTCLIAGYVKNNQPYEAL 190

Query: 217 DLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFD-------FDHHLS 269
            +F  M    V+P  +T+   L+ACA  RD+  G+ +H      G+D        +  L+
Sbjct: 191 KVFEDMSHWNVEPNEITMVNALIACAHSRDIDTGRWVHQRIRKAGYDPFMSTSNSNIILA 250

Query: 270 AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329
            A++ MY +C   L  AR +F +   +++V W+S+I  Y+Q     EA+ LF  M    +
Sbjct: 251 TAILEMYAKCGR-LKIARDLFNKMPQRNIVSWNSMINAYNQYERHQEALDLFFDMWTSGV 309

Query: 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389
            P+  T L++LS C  Q  L+ G  VH Y++K G+  D+S+  AL++MY+K G + ++ +
Sbjct: 310 YPDKATFLSVLSVCAHQCALALGQTVHAYLLKTGIATDISLATALLDMYAKTGELGNAQK 369

Query: 390 IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE-SGVEPDAITVLAILSACNHAG 448
           IF+ +  +D V WT++I+G   HG+G EAL +F  MQE S + PD IT + +L AC+H G
Sbjct: 370 IFSSLQKKDVVMWTSMINGLAMHGHGNEALSMFQTMQEDSSLVPDHITYIGVLFACSHVG 429

Query: 449 LVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSL 508
           LV+EA+  F  + +   +    EHY C VDLL ++G   +A +++ TM ++P+  I  +L
Sbjct: 430 LVEEAKKHFRLMTEMYGMVPGREHYGCMVDLLSRAGHFREAERLMETMTVQPNIAIWGAL 489

Query: 509 VSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLS 568
           ++ C+IH  + VA  +  +L E EP  +  + LLS + +++G W       +VM+ K ++
Sbjct: 490 LNGCQIHENVCVANQVKVRLKELEPCQSGVHILLSNIYAKAGRWEEVNVTRKVMKHKRIT 549

Query: 569 KSYGFSRIE 577
           K+ G S +E
Sbjct: 550 KTIGHSSVE 558



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 128/492 (26%), Positives = 228/492 (46%), Gaps = 22/492 (4%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V+ H    ++ LY+Q +  +G   +    P V+KAC      Q  G  +H   +KSG +A
Sbjct: 80  VNSHNPRMSMLLYRQMIE-NGYSPDHFTFPFVLKACCVI-ADQDCGKCIHSCIVKSGFEA 137

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D   +  L+ MY   +  +S  ++FD +P  + ++W  +I  + +N     +L++F +M 
Sbjct: 138 DAYTATGLLHMYVSCADMKSGLKVFDNIPKWNVVAWTCLIAGYVKNNQPYEALKVFEDMS 197

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDG------SFELSVFVSTALLDLY 175
                     +   +  C+   +++ GR +H  +   G      +   ++ ++TA+L++Y
Sbjct: 198 HWNVEPNEITMVNALIACAHSRDIDTGRWVHQRIRKAGYDPFMSTSNSNIILATAILEMY 257

Query: 176 SKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLT 235
           +KC    IA  +F +M  RN VSW +MI+     + +   +DLF  M   GV P + T  
Sbjct: 258 AKCGRLKIARDLFNKMPQRNIVSWNSMINAYNQYERHQEALDLFFDMWTSGVYPDKATFL 317

Query: 236 IVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV 295
            VL  CA    L  G+ +H Y    G   D  L+ AL+ MY +  E L  A+ IF   + 
Sbjct: 318 SVLSVCAHQCALALGQTVHAYLLKTGIATDISLATALLDMYAKTGE-LGNAQKIFSSLQK 376

Query: 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE-RIEPNSVTLLAILSSCTRQSFLSHG-- 352
           KDVV+W+S+I G +  G  +EA+ +F  M+ +  + P+ +T + +L +C+    +     
Sbjct: 377 KDVVMWTSMINGLAMHGHGNEALSMFQTMQEDSSLVPDHITYIGVLFACSHVGLVEEAKK 436

Query: 353 ---LGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS-WTTLISG 408
              L    Y M  G          ++++ S+ G    + ++   M  +  ++ W  L++G
Sbjct: 437 HFRLMTEMYGMVPGREH----YGCMVDLLSRAGHFREAERLMETMTVQPNIAIWGALLNG 492

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468
              H     A Q+ + ++E  +EP    V  +LS         E   +   VMK K+I  
Sbjct: 493 CQIHENVCVANQVKVRLKE--LEPCQSGVHILLSNIYAKAGRWEEVNVTRKVMKHKRITK 550

Query: 469 AIEHYACYVDLL 480
            I H +  + LL
Sbjct: 551 TIGHSSVEMKLL 562



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 105/224 (46%), Gaps = 14/224 (6%)

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           A ++  +     V IW+S+IRG+  S +   +M L+ +M      P+  T   +L +C  
Sbjct: 57  ADLVLRQIHNPSVYIWNSMIRGFVNSHNPRMSMLLYRQMIENGYSPDHFTFPFVLKACCV 116

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
            +    G  +H  I+K+G   D      L++MY  C  + S  ++F+ +   + V+WT L
Sbjct: 117 IADQDCGKCIHSCIVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIPKWNVVAWTCL 176

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK--- 462
           I+GY  +    EAL++F +M    VEP+ IT++  L AC H+  +     +   + K   
Sbjct: 177 IAGYVKNNQPYEALKVFEDMSHWNVEPNEITMVNALIACAHSRDIDTGRWVHQRIRKAGY 236

Query: 463 -------EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
                     I LA       +++  K G+++ A  + + MP +
Sbjct: 237 DPFMSTSNSNIILA----TAILEMYAKCGRLKIARDLFNKMPQR 276


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 162/466 (34%), Positives = 268/466 (57%), Gaps = 8/466 (1%)

Query: 112 RSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTAL 171
           R++     M   G    A   + +I  CS  G ++ G+++H  +   G +E  +FV   L
Sbjct: 38  RAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKG-YEPKMFVVNTL 96

Query: 172 LDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTR 231
           L++Y K +    A  +F++M  RN VSWT MIS   +  N D  +     M REGV+P  
Sbjct: 97  LNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYSNKLN-DKALKCLILMFREGVRPNM 155

Query: 232 VTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFE 291
            T + VL AC  L +LR    +H      G + D  + +AL+ +Y + ++ L  A  +F+
Sbjct: 156 FTYSSVLRACDGLPNLRQ---LHCGIIKTGLESDVFVRSALIDVYSKWSD-LDNALGVFD 211

Query: 292 RTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSH 351
               +D+V+W+SII G++Q+ D +EA+ LF RM+      +  TL ++L +CT  + L  
Sbjct: 212 EMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLEL 271

Query: 352 GLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGF 411
           G  VH +++K   + D+ + NAL++MY KCGS+  ++  F+ M  +D +SW+T+++G   
Sbjct: 272 GRQVHVHVLK--FDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQ 329

Query: 412 HGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIE 471
           +GY  +AL+LF  M+ESG  P+ ITVL +L AC+HAGLV++    F ++ K   +    E
Sbjct: 330 NGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGRE 389

Query: 472 HYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA 531
           HY C +DLLG++G++++A K++  M  +P +    +L+ ACR+H  +++A   A ++IE 
Sbjct: 390 HYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIEL 449

Query: 532 EPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           EPE+A  Y LLS + + +  W    EV + M  +G+ K+ G S IE
Sbjct: 450 EPEDAGTYILLSNIYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIE 495



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 120/396 (30%), Positives = 201/396 (50%), Gaps = 17/396 (4%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G++++      +IK C+     Q  G ++H      G +    + N+L++MY KF+  E 
Sbjct: 50  GVFADAITYSELIKCCSARGAVQE-GKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEE 108

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A  LFDEMP R+ +SW ++I+ ++ N    ++L+    M+  G        + ++  C  
Sbjct: 109 AEDLFDEMPERNVVSWTTMISAYS-NKLNDKALKCLILMFREGVRPNMFTYSSVLRACDG 167

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
           +  L   RQ+H  +I  G  E  VFV +AL+D+YSK      AL VF++M  R+ V W +
Sbjct: 168 LPNL---RQLHCGIIKTG-LESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNS 223

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           +I G   + + +  ++LF+ M+R G    + TLT VL AC  L  L  G+ +H   +   
Sbjct: 224 IIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVH--VHVLK 281

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
           FD D  L+ AL+ MYC+C  +L  A   F R   KDV+ WS+++ G +Q+G   +A++LF
Sbjct: 282 FDQDLILNNALIDMYCKCG-SLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELF 340

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN----ALMNM 377
             M+     PN +T+L +L +C+    +  G     Y       F V  G      L+++
Sbjct: 341 ESMKESGSRPNYITVLGVLFACSHAGLVEKGW---YYFRSMKKLFGVDPGREHYGCLIDL 397

Query: 378 YSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFH 412
             + G +  + ++ +EM    D V+W TL+     H
Sbjct: 398 LGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVH 433



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 91/195 (46%), Gaps = 21/195 (10%)

Query: 313 DLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN 372
           DL  AM+    M    +  +++T   ++  C+ +  +  G  VH +I   G    + + N
Sbjct: 35  DLHRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVN 94

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
            L+NMY K   +  +  +F+EM  R+ VSWTT+IS Y  +   ++AL+  + M   GV P
Sbjct: 95  TLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYS-NKLNDKALKCLILMFREGVRP 153

Query: 433 DAITVLAILSACN--------HAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSG 484
           +  T  ++L AC+        H G++K    L ++V     +          +D+  K  
Sbjct: 154 NMFTYSSVLRACDGLPNLRQLHCGIIKTG--LESDVFVRSAL----------IDVYSKWS 201

Query: 485 KIEDACKVVSTMPMK 499
            +++A  V   MP +
Sbjct: 202 DLDNALGVFDEMPTR 216


>gi|10092182|gb|AAG12601.1|AC068900_7 hypothetical protein; 7123-4412 [Arabidopsis thaliana]
          Length = 861

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 186/583 (31%), Positives = 292/583 (50%), Gaps = 25/583 (4%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           +E+       + +I  SV+++CA A +    G QLH  ALKS   AD ++  + + MYAK
Sbjct: 228 KEMQKVNAGVSQSIYASVLRSCA-ALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAK 286

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
               + A  LFD     +  S+N++I  ++Q     ++L +F  +   G       L+G+
Sbjct: 287 CDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGV 346

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
              C+ +  L  G QI+ L I   S  L V V+ A +D+Y KC     A RVF++M  R+
Sbjct: 347 FRACALVKGLSEGLQIYGLAI-KSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRD 405

Query: 196 EVSWTAMISGC-IDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
            VSW A+I+    + + Y+T + LF +M R  ++P   T   +L AC     L  G  IH
Sbjct: 406 AVSWNAIIAAHEQNGKGYET-LFLFVSMLRSRIEPDEFTFGSILKACTG-GSLGYGMEIH 463

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARI---IFERTKVKDV------------- 298
                 G   +  +  +L+ MY +C       +I    F+R  V                
Sbjct: 464 SSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQ 523

Query: 299 ---VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV 355
              V W+SII GY       +A  LF+RM    I P+  T   +L +C   +    G  +
Sbjct: 524 EMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQI 583

Query: 356 HCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYG 415
           H  ++K  L  DV I + L++MYSKCG +  S  +F +   RDFV+W  +I GY  HG G
Sbjct: 584 HAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKG 643

Query: 416 EEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC 475
           EEA+QLF  M    ++P+ +T ++IL AC H GL+ +    F  + ++  +   + HY+ 
Sbjct: 644 EEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSN 703

Query: 476 YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIH-GRLEVAEMLAHQLIEAEPE 534
            VD+LGKSGK++ A +++  MP +    I  +L+  C IH   +EVAE     L+  +P+
Sbjct: 704 MVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQ 763

Query: 535 NAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +++ YTLLS V +++G W    ++ R MR   L K  G S +E
Sbjct: 764 DSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVE 806



 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 138/433 (31%), Positives = 239/433 (55%), Gaps = 4/433 (0%)

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D V  N +I+ Y+K +    A   F+ MP RD +SWNS+++ + QNG  ++S+E+F +M 
Sbjct: 71  DVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMG 130

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
             G        A I+ +CS + +  LG QIH +V+  G  +  V  ++ALLD+Y+K   +
Sbjct: 131 REGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGC-DTDVVAASALLDMYAKGKRF 189

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
           + +LRVF+ +  +N VSW+A+I+GC+ +      +  F+ MQ+     ++     VL +C
Sbjct: 190 VESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSC 249

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A L +LR G  +H +A    F  D  +  A + MY +C + +  A+I+F+ ++  +   +
Sbjct: 250 AALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKC-DNMQDAQILFDNSENLNRQSY 308

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           +++I GYSQ     +A+ LF R+    +  + ++L  +  +C     LS GL ++   +K
Sbjct: 309 NAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIK 368

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
           + L+ DV + NA ++MY KC ++  + ++F+EM  RD VSW  +I+ +  +G G E L L
Sbjct: 369 SSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFL 428

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
           F+ M  S +EPD  T  +IL AC    L    E + ++++K   +A         +D+  
Sbjct: 429 FVSMLRSRIEPDEFTFGSILKACTGGSLGYGME-IHSSIVK-SGMASNSSVGCSLIDMYS 486

Query: 482 KSGKIEDACKVVS 494
           K G IE+A K+ S
Sbjct: 487 KCGMIEEAEKIHS 499



 Score =  222 bits (565), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 150/541 (27%), Positives = 266/541 (49%), Gaps = 31/541 (5%)

Query: 33  VIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYR 92
           ++K C++ +     G+Q+H   ++ G D D V +++L+ MYAK  +   + ++F  +P +
Sbjct: 144 ILKVCSFLED-TSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEK 202

Query: 93  DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIH 152
           +++SW++II    QN     +L+ F+EM      +   + A ++  C+ + EL LG Q+H
Sbjct: 203 NSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLH 262

Query: 153 ALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNY 212
           A  +    F     V TA LD+Y+KC +   A  +F+     N  S+ AMI+G    ++ 
Sbjct: 263 AHAL-KSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHG 321

Query: 213 DTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAAL 272
              + LF  +   G+    ++L+ V  ACA ++ L  G  I+G A       D  ++ A 
Sbjct: 322 FKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAA 381

Query: 273 MHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPN 332
           + MY +C +AL  A  +F+  + +D V W++II  + Q+G   E + LF  M   RIEP+
Sbjct: 382 IDMYGKC-QALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPD 440

Query: 333 SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFN 392
             T  +IL +CT  S L +G+ +H  I+K+G+  + S+G +L++MYSKCG I  + +I +
Sbjct: 441 EFTFGSILKACTGGS-LGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHS 499

Query: 393 EMAARDF--------------------VSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
               R                      VSW ++ISGY      E+A  LF  M E G+ P
Sbjct: 500 RFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITP 559

Query: 433 DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC--YVDLLGKSGKIEDAC 490
           D  T   +L  C +       + +   V+K++   L  + Y C   VD+  K G + D+ 
Sbjct: 560 DKFTYATVLDTCANLASAGLGKQIHAQVIKKE---LQSDVYICSTLVDMYSKCGDLHDS- 615

Query: 491 KVVSTMPMKPSTRILSSLVSACRIHGRLEVA-EMLAHQLIEAEPENAANYTLLSMVCSES 549
           +++    ++      ++++     HG+ E A ++    ++E    N   +  +   C+  
Sbjct: 616 RLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHM 675

Query: 550 G 550
           G
Sbjct: 676 G 676



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 109/395 (27%), Positives = 185/395 (46%), Gaps = 34/395 (8%)

Query: 139 CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
           C++ G LELG+Q HA +I+ G F  + FV   LL +Y+    ++ A  VF++M +R+ VS
Sbjct: 16  CAKQGALELGKQAHAHMIISG-FRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVS 74

Query: 199 WTAMISGCIDS-----------------------------QNYDT--GIDLFRAMQREGV 227
           W  MI+G   S                             QN ++   I++F  M REG+
Sbjct: 75  WNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGI 134

Query: 228 KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPAR 287
           +    T  I+L  C+ L D   G  IHG     G D D   ++AL+ MY +    +   R
Sbjct: 135 EFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLR 194

Query: 288 IIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQS 347
            +F+    K+ V WS+II G  Q+  LS A+K F  M+      +     ++L SC   S
Sbjct: 195 -VFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALS 253

Query: 348 FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLIS 407
            L  G  +H + +K+    D  +  A ++MY+KC ++  +  +F+     +  S+  +I+
Sbjct: 254 ELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMIT 313

Query: 408 GYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIA 467
           GY    +G +AL LF  +  SG+  D I++  +  AC     + E   ++   +K   ++
Sbjct: 314 GYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIK-SSLS 372

Query: 468 LAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPST 502
           L +      +D+ GK   + +A +V   M  + + 
Sbjct: 373 LDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAV 407


>gi|359493563|ref|XP_002269754.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71420-like [Vitis vinifera]
          Length = 741

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 181/582 (31%), Positives = 303/582 (52%), Gaps = 14/582 (2%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQT-HQHFGLQLHCTALKSGS 59
           + S+   ++ L L+     P  L  +     ++ +ACA   +  +   L  H       S
Sbjct: 37  LCSRGHLQEALKLFYSITPPPPLVHSHHTYAALFQACARRSSLPEGQALHRHMFLHNPNS 96

Query: 60  DADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFRE 119
           D +  ++N +++MYAK    + A+Q+FDEMP ++ +SW ++++ + Q+G       +FR 
Sbjct: 97  DFNLFLTNHVVNMYAKCGSLDYAHQMFDEMPEKNIVSWTALVSGYAQHGRSNECFRVFRG 156

Query: 120 MYLCGFVLKAEL-LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSK- 177
           M +  +    E   A +IS C   G+   GRQ+HAL +   SF+  V+V  AL+ +Y K 
Sbjct: 157 MLI--WHQPTEFAFASVISACG--GDDNCGRQVHALAL-KTSFDSCVYVGNALIMMYCKS 211

Query: 178 CHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTL-TI 236
           C     A  V+E M  RN VSW +MI+G       +  ++LF  M   G++  R TL +I
Sbjct: 212 CGGADEAWNVYEAMGFRNLVSWNSMIAGFQVCGCGNRALELFSQMHVGGIRFDRATLVSI 271

Query: 237 VLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECT-EALHPARIIFERTKV 295
               C     L     +       GF     ++ AL+  Y     E     RI  E    
Sbjct: 272 FSCLCGMGDGLECCFQLQCLTIKTGFILKIEVATALVKAYSSLGGEVSDCYRIFLELDGR 331

Query: 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV 355
           +DVV W+ II  +++  D  +A+ +F +   E + P+      +L +C   +   H L V
Sbjct: 332 QDVVSWTGIIAAFAER-DPKKALVIFRQFLRECLAPDRHMFSIVLKACAGLATERHALTV 390

Query: 356 HCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYG 415
             +++K G   D+ + NAL++  ++CGS+  S Q+F++M +RD VSW +++  Y  HG G
Sbjct: 391 QSHVLKVGFEDDIVLANALIHACARCGSVALSKQVFDKMGSRDTVSWNSMLKAYAMHGQG 450

Query: 416 EEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC 475
           +EAL LF +M     +PD  T +A+LSAC+HAG+ +E   +F  +     I   ++HYAC
Sbjct: 451 KEALLLFSQMD---AQPDGATFVALLSACSHAGMAEEGAKIFETMSNNHGIVPQLDHYAC 507

Query: 476 YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPEN 535
            VD+LG++G+I +A +++  MPM+P + + S+L+ +CR HG  ++A++ A +L E +P N
Sbjct: 508 MVDILGRAGQISEAKELIDKMPMEPDSVVWSALLGSCRKHGETKLAKLAAVKLKELDPNN 567

Query: 536 AANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +  Y L+S +    G +  A  + R M  K + K  G S IE
Sbjct: 568 SLGYVLMSNIFCTDGRFNEARLIRREMEGKIVRKEPGLSWIE 609


>gi|296088310|emb|CBI36755.3| unnamed protein product [Vitis vinifera]
          Length = 751

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 157/504 (31%), Positives = 270/504 (53%), Gaps = 36/504 (7%)

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A  +F+++       WNS+I  ++ +     +L M+REM   G+         ++  CS 
Sbjct: 58  AKSVFNQIDRPSLYIWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSL 117

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
           +    LG+ +H  ++  G FE+ V+ +TALL +Y+ C     AL+VF+ +   N V+WT+
Sbjct: 118 VNGYNLGQCVHNCIVKTG-FEVDVYAATALLQMYAACGDMEAALKVFDDIPKWNVVAWTS 176

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           +I+GCI +      + +++ M+   V P  +T+  VL+ACA  RDL  G+ +H      G
Sbjct: 177 LIAGCISNDCPSEAVRVYKDMELWSVAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMG 236

Query: 262 FD-------FDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
            D       F+  L+ A++ MY +C                            Y+Q G  
Sbjct: 237 LDPFQSNSNFNVILATAIVDMYAKCA---------------------------YNQYGQA 269

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
           +EA+ LFS MR+   +P+  T L ++ +C     L  G  +H Y+ K  L  D +IG AL
Sbjct: 270 NEALDLFSDMRIAGFDPDKATFLCVIGACAHLGALVSGQALHAYVSKTNLTDDTAIGTAL 329

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE-SGVEPD 433
           ++MY+K G    + Q+F+E+  +D  +WT+LI G   HG+GEEAL  F +MQE + + PD
Sbjct: 330 VDMYAKSGDAERAQQVFSELQKKDVTAWTSLIIGLAMHGHGEEALTFFKKMQEDTALIPD 389

Query: 434 AITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVV 493
            IT + +LSAC+H G V++ +  F ++     I    +HY C VDLL ++G++ +A ++V
Sbjct: 390 EITYIGVLSACSHVGKVEDGKNHFISMKNVHGIEPTTQHYGCMVDLLSRAGRLGEAERLV 449

Query: 494 STMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWL 553
             MP++P+T I S+L++ C+I+  ++VA+ +  ++ E E + +  Y LLS + + +  W 
Sbjct: 450 EKMPVEPNTAIWSALLNGCKIYQNIDVADRVRRRVRELEVDGSGVYVLLSNIYAGACRWE 509

Query: 554 GAEEVWRVMRAKGLSKSYGFSRIE 577
             +    +M+ + + KS G S +E
Sbjct: 510 EVKMARELMKERKIQKSLGHSSVE 533



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 113/484 (23%), Positives = 222/484 (45%), Gaps = 42/484 (8%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           ++ L +Y+ E+   G   +    P V+KAC+    + + G  +H   +K+G + D   + 
Sbjct: 87  DEALTMYR-EMRQKGYAPDHFTFPFVLKACSLVNGY-NLGQCVHNCIVKTGFEVDVYAAT 144

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +L+ MYA     E+A ++FD++P  + ++W S+I     N     ++ ++++M L     
Sbjct: 145 ALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDCPSEAVRVYKDMELWSVAP 204

Query: 128 KAELLAGIISLCSQIGELELGRQIH------ALVIVDGSFELSVFVSTALLDLYSKCHHW 181
               +  ++  C++  +L  GR +H       L     +   +V ++TA++D+Y+KC   
Sbjct: 205 NEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNSNFNVILATAIVDMYAKC--- 261

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
                 + Q    NE                   +DLF  M+  G  P + T   V+ AC
Sbjct: 262 -----AYNQYGQANEA------------------LDLFSDMRIAGFDPDKATFLCVIGAC 298

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A L  L +G+A+H Y        D  +  AL+ MY +  +A   A+ +F   + KDV  W
Sbjct: 299 AHLGALVSGQALHAYVSKTNLTDDTAIGTALVDMYAKSGDA-ERAQQVFSELQKKDVTAW 357

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLER-IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           +S+I G +  G   EA+  F +M+ +  + P+ +T + +LS+C+    +  G   H   M
Sbjct: 358 TSLIIGLAMHGHGEEALTFFKKMQEDTALIPDEITYIGVLSACSHVGKVEDGKN-HFISM 416

Query: 361 KA--GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS-WTTLISGYGFHGYGEE 417
           K   G+         ++++ S+ G +  + ++  +M      + W+ L++G   +   + 
Sbjct: 417 KNVHGIEPTTQHYGCMVDLLSRAGRLGEAERLVEKMPVEPNTAIWSALLNGCKIYQNIDV 476

Query: 418 ALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYV 477
           A ++   ++E  +E D   V  +LS         E   +   +MKE+KI  ++ H +  +
Sbjct: 477 ADRVRRRVRE--LEVDGSGVYVLLSNIYAGACRWEEVKMARELMKERKIQKSLGHSSVEM 534

Query: 478 DLLG 481
            ++G
Sbjct: 535 KMVG 538


>gi|225456719|ref|XP_002268090.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 529

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 169/530 (31%), Positives = 286/530 (53%), Gaps = 7/530 (1%)

Query: 55  LKSGSDADPVISNSLISMYAKFSKPES---AYQLFDEMPYRDTISWNSIINCFTQNGFYV 111
           + +G   +P +++ L+  +A  + P +   A ++ D++   DT +WN+II  + +     
Sbjct: 2   ITNGHLHNPTLASKLVVSFASITLPGTTSVARRIADQIDGLDTYTWNTIIRGYLEGNDPE 61

Query: 112 RSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTAL 171
            ++ ++  +   G  +    L  +I  C     +  G QIH  +   G FE  V + TAL
Sbjct: 62  EAILVYNHVRKKGLKVDTYTLVFVIKACGLRPVILEGEQIHGQIFKLG-FEFEVIIQTAL 120

Query: 172 LDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTR 231
           L+LY          ++F++M  R+ V W A+I+            ++   M R  VKP  
Sbjct: 121 LNLYGLFDEDCGLQQIFDEMPQRDLVMWNALIAAYAHGNCPYKVREVSYDMVRSNVKPNG 180

Query: 232 VTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFE 291
           VT   +L  C+ LR LR GKA+HGY      +FD  +  AL+ +Y +C  ++  A  +F+
Sbjct: 181 VTAVSILSVCSSLRALREGKAVHGYVTKNLIEFDVFVHNALIVVYSKCG-SIRDAVQVFQ 239

Query: 292 RTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSH 351
              +++VV W+S+I GYS +   +EA+  F +M  E I P+ +T+L ++  C++      
Sbjct: 240 LMPMRNVVSWTSLINGYSDNNCPNEALGFFKQMEAENIRPDEITVLGVVCMCSKLRSFEL 299

Query: 352 GLGVHCYIMKAGL-NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYG 410
           G  +  Y++K GL     +I NALM+M++KCG+I  + QIF+ M  +  VSWT +I G  
Sbjct: 300 GEWISQYVVKIGLLKESPAIANALMDMHAKCGNINRACQIFDGMEEKTIVSWTIMIQGLA 359

Query: 411 FHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAI 470
            HG+G  AL  F +MQ  G +PD++  L++LSAC+HAGLV E    F+++  +  I+  +
Sbjct: 360 MHGHGLSALVRFCQMQREGFKPDSLVFLSLLSACSHAGLVDEGWRCFSSMEADYHISPWM 419

Query: 471 EHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE 530
           EHY C VD+L ++G +++A K V  MP+KP   +  +L+ AC   G + +A  + + L E
Sbjct: 420 EHYGCMVDILCRAGLVDEAFKFVQNMPIKPDMIVWRTLLGACHTQGNISLANQVMNYLCE 479

Query: 531 AEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSK-SYGFSRIENE 579
             P+ + +Y LLS + + +  W    EV + M  +G++K   G S IE +
Sbjct: 480 LGPKKSEDYVLLSNLFASNAEWDNVGEVRKEMGDRGVTKQDPGCSFIEAD 529



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 111/408 (27%), Positives = 198/408 (48%), Gaps = 17/408 (4%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E+ + +Y   +   GL  +T  L  VIKAC         G Q+H    K G + + +I  
Sbjct: 61  EEAILVYNH-VRKKGLKVDTYTLVFVIKACGLRPVILE-GEQIHGQIFKLGFEFEVIIQT 118

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +L+++Y  F +     Q+FDEMP RD + WN++I  +       +  E+  +M       
Sbjct: 119 ALLNLYGLFDEDCGLQQIFDEMPQRDLVMWNALIAAYAHGNCPYKVREVSYDMVRSNVKP 178

Query: 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
                  I+S+CS +  L  G+ +H  V      E  VFV  AL+ +YSKC     A++V
Sbjct: 179 NGVTAVSILSVCSSLRALREGKAVHGYV-TKNLIEFDVFVHNALIVVYSKCGSIRDAVQV 237

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F+ M +RN VSWT++I+G  D+   +  +  F+ M+ E ++P  +T+  V+  C++LR  
Sbjct: 238 FQLMPMRNVVSWTSLINGYSDNNCPNEALGFFKQMEAENIRPDEITVLGVVCMCSKLRSF 297

Query: 248 RNGKAIHGYAYCCG-FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
             G+ I  Y    G       ++ ALM M+ +C   ++ A  IF+  + K +V W+ +I+
Sbjct: 298 ELGEWISQYVVKIGLLKESPAIANALMDMHAKCGN-INRACQIFDGMEEKTIVSWTIMIQ 356

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           G +  G    A+  F +M+ E  +P+S+  L++LS+C+    +  G    C+   + +  
Sbjct: 357 GLAMHGHGLSALVRFCQMQREGFKPDSLVFLSLLSACSHAGLVDEGW--RCF---SSMEA 411

Query: 367 DVSIG------NALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLIS 407
           D  I         ++++  + G +  + +    M  + D + W TL+ 
Sbjct: 412 DYHISPWMEHYGCMVDILCRAGLVDEAFKFVQNMPIKPDMIVWRTLLG 459


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 169/598 (28%), Positives = 298/598 (49%), Gaps = 70/598 (11%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           Q H   LKSG+  D  IS  LI+ Y+ ++    A  +   +P     S++S+I   T+  
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAK 95

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
            + +S+ +F  M+  G +    +L  +  +C+++   + G+QIH +  V G  ++  FV 
Sbjct: 96  LFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSG-LDMDAFVQ 154

Query: 169 TALLDLYSKCHHWLIALRVFEQM-----------------------VIR----------- 194
            +L  +Y +C     A +VF++M                       V+R           
Sbjct: 155 GSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIE 214

Query: 195 -NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAI 253
            N VSW  ++SG   S  +   + +F+ M   G  P +VT++ VL +  +  +L  G+ I
Sbjct: 215 PNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQI 274

Query: 254 HGYAYCCGFDFDHHLSAALMHMYCE----------------------------------C 279
           HGY    G   D  + +A++ MY +                                   
Sbjct: 275 HGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLV 334

Query: 280 TEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAI 339
            +AL    +  E+    +VV W+SII G +Q+G   EA++LF  M++  ++PN VT+ ++
Sbjct: 335 DKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSM 394

Query: 340 LSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDF 399
           L +C   + L HG   H + ++  L  DV +G+AL++MY+KCG I  S  +FN M  ++ 
Sbjct: 395 LPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKNL 454

Query: 400 VSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNN 459
           V W +L++GY  HG  +E + +F  +  + ++PD I+  ++LSAC   GL  E    FN 
Sbjct: 455 VCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFNM 514

Query: 460 VMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLE 519
           + +E  I   +EHY+C V+LLG++GK+++A  ++  +P +P + +  +L+++CR+   ++
Sbjct: 515 MSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQNNVD 574

Query: 520 VAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +AE+ A +L   EPEN   Y L+S + +  G W   + +   M + GL K+ G S I+
Sbjct: 575 LAEIAAQKLFHLEPENPGTYVLMSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQ 632


>gi|326524926|dbj|BAK04399.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 584

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 177/540 (32%), Positives = 291/540 (53%), Gaps = 17/540 (3%)

Query: 48  LQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQN 107
           L +H  A+  G  A+P  +  L++  A  S    A ++FD  P RD   WN+++      
Sbjct: 40  LPIHARAVLLGVAANPAFATRLLAAAAPCSL-AYARRVFDAAPRRDAYMWNTLLRAHAHA 98

Query: 108 GFYVRS-----LEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFE 162
                S     L++++ M   G          ++  C+      LGR  H   +    F 
Sbjct: 99  QAPAGSTAGGALQLYKRMRAAGVAPDCYTYPIVLPACAAARAPRLGRAAHGDAV---RFA 155

Query: 163 LS--VFVSTALLDLYSKCHHWLIALRVF---EQMVIRNEVSWTAMISGCIDSQNYDTGID 217
           L+   FV +AL+ +Y +      A +VF     +  R  VSWTAM++G   +  +   + 
Sbjct: 156 LAEDGFVHSALIAMYCQEGDVADAEQVFLAAAAVGARTVVSWTAMVAGYAQNCLFGQAVT 215

Query: 218 LFRAMQREGVKPTRVTLTIVLLACAELRD-LRNGKAIHGYAYCCGFDFDHHLSAALMHMY 276
           +F AM  +G+ P  +TL I  L C + ++ L  G+ +HG+    GFD +  L  AL+ MY
Sbjct: 216 VFGAMVAQGMLPNEITL-ISFLPCLQGQECLAAGEMVHGFVVKLGFDANLPLVNALIAMY 274

Query: 277 CECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTL 336
            +C  ++  A+ +F+      VV W++++  Y Q+GD   A+K F RM  E++  ++VTL
Sbjct: 275 GKCG-SIAAAKELFDGMAAHTVVSWNTMVAMYEQNGDGVRAIKFFHRMLSEKVGFDAVTL 333

Query: 337 LAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA 396
           +++LS+CTRQ  L  G  VH      GL+ D  IGN L++MY+KCG I  + Q F+ +  
Sbjct: 334 VSVLSACTRQGALETGKWVHELARSRGLDTDARIGNVLVDMYAKCGEIAYARQAFDGLRE 393

Query: 397 RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETL 456
              VSW+ +IS Y  HG  EEAL LF  M++ GV+P++ T+ A+L AC H+GLV E   +
Sbjct: 394 PGVVSWSAMISAYANHGEPEEALNLFSAMKDQGVKPNSFTLTAVLVACGHSGLVDEGLAI 453

Query: 457 FNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG 516
           FN+++++  I+  +E+YAC VD+LG++G++ +A +++  M M+P   I  + +  CR+HG
Sbjct: 454 FNSIVRDYHISPTLENYACMVDMLGRAGRLVEAYEIIRGMSMQPDKCIWGAFLGGCRLHG 513

Query: 517 RLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
            LE+AE +A  L ++   +   Y L++ +  E+G    AE   R M+   L K+ G S +
Sbjct: 514 NLELAEFVAKDLFQSGSNDVTFYVLMANMYFEAGMLEDAERTRRAMKEMELKKTAGHSLV 573



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 130/476 (27%), Positives = 213/476 (44%), Gaps = 27/476 (5%)

Query: 10  TLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSL 69
            L LYK+ +  +G+  +    P ++     A      G   H  A++     D  + ++L
Sbjct: 109 ALQLYKR-MRAAGVAPDCYTYP-IVLPACAAARAPRLGRAAHGDAVRFALAEDGFVHSAL 166

Query: 70  ISMYAKFSKPESAYQLF---DEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           I+MY +      A Q+F     +  R  +SW +++  + QN  + +++ +F  M   G +
Sbjct: 167 IAMYCQEGDVADAEQVFLAAAAVGARTVVSWTAMVAGYAQNCLFGQAVTVFGAMVAQGML 226

Query: 127 LKAELLAGIISLCSQIGE-LELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
                L   +  C Q  E L  G  +H  V+  G F+ ++ +  AL+ +Y KC     A 
Sbjct: 227 PNEITLISFLP-CLQGQECLAAGEMVHGFVVKLG-FDANLPLVNALIAMYGKCGSIAAAK 284

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYD--TGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
            +F+ M     VSW  M++  +  QN D    I  F  M  E V    VTL  VL AC  
Sbjct: 285 ELFDGMAAHTVVSWNTMVA--MYEQNGDGVRAIKFFHRMLSEKVGFDAVTLVSVLSACTR 342

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
              L  GK +H  A   G D D  +   L+ MY +C E  + AR  F+  +   VV WS+
Sbjct: 343 QGALETGKWVHELARSRGLDTDARIGNVLVDMYAKCGEIAY-ARQAFDGLREPGVVSWSA 401

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           +I  Y+  G+  EA+ LFS M+ + ++PNS TL A+L +C     +  GL +   I++  
Sbjct: 402 MISAYANHGEPEEALNLFSAMKDQGVKPNSFTLTAVLVACGHSGLVDEGLAIFNSIVR-- 459

Query: 364 LNFDVSIGNALMN------MYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFHGYGE 416
              D  I   L N      M  + G +  +++I   M+ + D   W   + G   HG  E
Sbjct: 460 ---DYHISPTLENYACMVDMLGRAGRLVEAYEIIRGMSMQPDKCIWGAFLGGCRLHGNLE 516

Query: 417 EALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEH 472
            A  +  ++ +SG       VL + +    AG++++AE      MKE ++     H
Sbjct: 517 LAEFVAKDLFQSGSNDVTFYVL-MANMYFEAGMLEDAERT-RRAMKEMELKKTAGH 570


>gi|334185027|ref|NP_186882.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546764|sp|Q9FWA6.2|PP207_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g02330
 gi|332640272|gb|AEE73793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 903

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 187/585 (31%), Positives = 293/585 (50%), Gaps = 29/585 (4%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           +E+       + +I  SV+++CA A +    G QLH  ALKS   AD ++  + + MYAK
Sbjct: 270 KEMQKVNAGVSQSIYASVLRSCA-ALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAK 328

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
               + A  LFD     +  S+N++I  ++Q     ++L +F  +   G       L+G+
Sbjct: 329 CDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGV 388

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
              C+ +  L  G QI+ L I   S  L V V+ A +D+Y KC     A RVF++M  R+
Sbjct: 389 FRACALVKGLSEGLQIYGLAI-KSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRD 447

Query: 196 EVSWTAMISGC-IDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
            VSW A+I+    + + Y+T + LF +M R  ++P   T   +L AC     L  G  IH
Sbjct: 448 AVSWNAIIAAHEQNGKGYET-LFLFVSMLRSRIEPDEFTFGSILKACTG-GSLGYGMEIH 505

Query: 255 GYAYCCGFDFDHHLSAALMHMYCEC-----TEALHPARIIFERTKVKDV----------- 298
                 G   +  +  +L+ MY +C      E +H     F+R  V              
Sbjct: 506 SSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSR--FFQRANVSGTMEELEKMHNKR 563

Query: 299 -----VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGL 353
                V W+SII GY       +A  LF+RM    I P+  T   +L +C   +    G 
Sbjct: 564 LQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGK 623

Query: 354 GVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHG 413
            +H  ++K  L  DV I + L++MYSKCG +  S  +F +   RDFV+W  +I GY  HG
Sbjct: 624 QIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHG 683

Query: 414 YGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY 473
            GEEA+QLF  M    ++P+ +T ++IL AC H GL+ +    F  + ++  +   + HY
Sbjct: 684 KGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHY 743

Query: 474 ACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIH-GRLEVAEMLAHQLIEAE 532
           +  VD+LGKSGK++ A +++  MP +    I  +L+  C IH   +EVAE     L+  +
Sbjct: 744 SNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLD 803

Query: 533 PENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           P++++ YTLLS V +++G W    ++ R MR   L K  G S +E
Sbjct: 804 PQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVE 848



 Score =  232 bits (592), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 138/433 (31%), Positives = 239/433 (55%), Gaps = 4/433 (0%)

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D V  N +I+ Y+K +    A   F+ MP RD +SWNS+++ + QNG  ++S+E+F +M 
Sbjct: 113 DVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMG 172

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
             G        A I+ +CS + +  LG QIH +V+  G  +  V  ++ALLD+Y+K   +
Sbjct: 173 REGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGC-DTDVVAASALLDMYAKGKRF 231

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
           + +LRVF+ +  +N VSW+A+I+GC+ +      +  F+ MQ+     ++     VL +C
Sbjct: 232 VESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSC 291

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A L +LR G  +H +A    F  D  +  A + MY +C + +  A+I+F+ ++  +   +
Sbjct: 292 AALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKC-DNMQDAQILFDNSENLNRQSY 350

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           +++I GYSQ     +A+ LF R+    +  + ++L  +  +C     LS GL ++   +K
Sbjct: 351 NAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIK 410

Query: 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQL 421
           + L+ DV + NA ++MY KC ++  + ++F+EM  RD VSW  +I+ +  +G G E L L
Sbjct: 411 SSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFL 470

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481
           F+ M  S +EPD  T  +IL AC    L    E + ++++K   +A         +D+  
Sbjct: 471 FVSMLRSRIEPDEFTFGSILKACTGGSLGYGME-IHSSIVK-SGMASNSSVGCSLIDMYS 528

Query: 482 KSGKIEDACKVVS 494
           K G IE+A K+ S
Sbjct: 529 KCGMIEEAEKIHS 541



 Score =  222 bits (565), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 150/541 (27%), Positives = 266/541 (49%), Gaps = 31/541 (5%)

Query: 33  VIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYR 92
           ++K C++ +     G+Q+H   ++ G D D V +++L+ MYAK  +   + ++F  +P +
Sbjct: 186 ILKVCSFLED-TSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEK 244

Query: 93  DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIH 152
           +++SW++II    QN     +L+ F+EM      +   + A ++  C+ + EL LG Q+H
Sbjct: 245 NSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLH 304

Query: 153 ALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNY 212
           A  +    F     V TA LD+Y+KC +   A  +F+     N  S+ AMI+G    ++ 
Sbjct: 305 AHAL-KSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHG 363

Query: 213 DTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAAL 272
              + LF  +   G+    ++L+ V  ACA ++ L  G  I+G A       D  ++ A 
Sbjct: 364 FKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAA 423

Query: 273 MHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPN 332
           + MY +C +AL  A  +F+  + +D V W++II  + Q+G   E + LF  M   RIEP+
Sbjct: 424 IDMYGKC-QALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPD 482

Query: 333 SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFN 392
             T  +IL +CT  S L +G+ +H  I+K+G+  + S+G +L++MYSKCG I  + +I +
Sbjct: 483 EFTFGSILKACTGGS-LGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHS 541

Query: 393 EMAARDF--------------------VSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
               R                      VSW ++ISGY      E+A  LF  M E G+ P
Sbjct: 542 RFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITP 601

Query: 433 DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC--YVDLLGKSGKIEDAC 490
           D  T   +L  C +       + +   V+K++   L  + Y C   VD+  K G + D+ 
Sbjct: 602 DKFTYATVLDTCANLASAGLGKQIHAQVIKKE---LQSDVYICSTLVDMYSKCGDLHDS- 657

Query: 491 KVVSTMPMKPSTRILSSLVSACRIHGRLEVA-EMLAHQLIEAEPENAANYTLLSMVCSES 549
           +++    ++      ++++     HG+ E A ++    ++E    N   +  +   C+  
Sbjct: 658 RLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHM 717

Query: 550 G 550
           G
Sbjct: 718 G 718


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 161/529 (30%), Positives = 281/529 (53%), Gaps = 35/529 (6%)

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A  +F+ +   + + WN++      +   V +++++  M   G +  +     ++  C++
Sbjct: 56  AISVFETIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAK 115

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE------------ 189
           +   + G+QIH  V+  G +EL ++V T+L+ +Y K   W  A +VF+            
Sbjct: 116 LKVSKEGQQIHGHVLKLG-YELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTA 174

Query: 190 -------------------QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPT 230
                              ++ +++ VSW A+ISG  D+ N    +DLF+ M +  VKP 
Sbjct: 175 LITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPD 234

Query: 231 RVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIF 290
             T+  V+ ACA+   ++ G+ +H +    G   +  +  AL+ +Y +C E +  A  +F
Sbjct: 235 ESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGE-VETACGLF 293

Query: 291 ERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLS 350
           +    KDV+ W+++I GY+      EA+ LF  M      PN VT+L+IL +C +   + 
Sbjct: 294 QGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAID 353

Query: 351 HGLGVHCYIMK--AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
            G  +H YI K   G+    S+  +L++MY+KCG I ++HQ+FN M  R   +   +I G
Sbjct: 354 FGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFG 413

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468
           +  HG    A  +F  M+++G+EPD IT + +LSAC+H+G++     +F ++ +  KI  
Sbjct: 414 FAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITP 473

Query: 469 AIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
            +EHY C +DLLG  G  ++A ++++TM M+P   I  SL+ AC++HG +E+ E  A +L
Sbjct: 474 KLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVELGESFAQKL 533

Query: 529 IEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           I+ EPEN  +Y LLS + + +G W     +  ++  KG+ K  G S IE
Sbjct: 534 IKIEPENPGSYVLLSNIYATAGRWNEVANIRALLNDKGMKKVPGCSSIE 582


>gi|224095278|ref|XP_002310370.1| predicted protein [Populus trichocarpa]
 gi|222853273|gb|EEE90820.1| predicted protein [Populus trichocarpa]
          Length = 711

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 177/566 (31%), Positives = 291/566 (51%), Gaps = 4/566 (0%)

Query: 14  YKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMY 73
           + + +   G  ++     S++K  A+A  H   G Q+H   +K G +      ++L+ MY
Sbjct: 89  FLKSMKRRGFQADGYTFGSILKGVAHACRHD-LGQQVHSLIVKIGYEQSVYAGSALLDMY 147

Query: 74  AKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLA 133
           AK  + E AY +F  MP R+ +SWN++I+ F Q G    +  +   M   G  ++    A
Sbjct: 148 AKCERVEDAYDVFQGMPVRNFVSWNALIDGFVQVGDRDTAFWLLDCMQKEGVRVEDGTFA 207

Query: 134 GIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV- 192
            +++L       +L  Q+H  +I  G  E    +  A L  YS+C     A RVF+  V 
Sbjct: 208 PLLTLLDGDKFYKLTMQLHCKIIKHG-LEFYNALCNATLTAYSECGLLEDAKRVFDGAVG 266

Query: 193 IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKA 252
            R+ V+W +M+   +     +   +LF  MQ  G +P   T T V+ AC        GK+
Sbjct: 267 TRDLVTWNSMLVAYLVHDKDEDAFNLFLEMQGFGFEPDIYTYTCVISACFAAAHKNYGKS 326

Query: 253 IHGYAYCCGFDFDHHLSAALMHMYCECT-EALHPARIIFERTKVKDVVIWSSIIRGYSQS 311
            H      G +    +  AL+ MY +   +++  A  +F   K KD V W+SI+ G+SQ 
Sbjct: 327 FHALVIKRGLEESVTICNALITMYLKLNNKSMEAALNLFHSMKSKDRVSWNSILTGFSQM 386

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
           G   +A+KLF  MR    E +     A+L SC+  + L  G  +H   +K G + +  + 
Sbjct: 387 GFSEDALKLFGHMRSSLEEIDDYAYSAVLRSCSDLAILQLGQQIHLLTVKTGFDSNDFVA 446

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
           ++L+ MYSKCG I  + + F +      ++W +++  Y  HG G+ AL LF  M+E  V+
Sbjct: 447 SSLIFMYSKCGIIEDAWKCFEDTTKESSITWNSIMFAYAQHGQGDVALDLFSIMREREVK 506

Query: 432 PDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACK 491
            D +T +A+L+AC+H GLV++   +  ++  +  I   +EHYAC VDL G++G +E+A  
Sbjct: 507 LDHVTFVAVLTACSHVGLVEQGRCVLKSMESDYGIPPRMEHYACAVDLFGRAGYLEEAKA 566

Query: 492 VVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGN 551
           ++ +MP +P+  +L +L+ ACR  G +E+A  +A QL+E EPE    Y +LS +      
Sbjct: 567 LIDSMPFQPNAMVLKTLLGACRACGNIELAAQVASQLLEVEPEEHCTYVILSNMYGHLKR 626

Query: 552 WLGAEEVWRVMRAKGLSKSYGFSRIE 577
           W     V R+MR + + K  G+S IE
Sbjct: 627 WDDKASVTRLMRERKVKKVPGWSWIE 652



 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 146/507 (28%), Positives = 252/507 (49%), Gaps = 12/507 (2%)

Query: 51  HCTALKSGSDADPVISNSLISMYAK-FSKPES-AYQLFDEMPYRDTISWNSIINCFTQNG 108
           HC A KSG  +   ++N+++  Y+K FS   + A +LFDEMP++DT++WN++I  + ++G
Sbjct: 22  HCQAFKSGIISHIYVANNILFRYSKCFSGDLNLACKLFDEMPHKDTVTWNTMITGYVESG 81

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
               + E  + M   GF         I+   +     +LG+Q+H+L++  G +E SV+  
Sbjct: 82  NLGAAWEFLKSMKRRGFQADGYTFGSILKGVAHACRHDLGQQVHSLIVKIG-YEQSVYAG 140

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
           +ALLD+Y+KC     A  VF+ M +RN VSW A+I G +   + DT   L   MQ+EGV+
Sbjct: 141 SALLDMYAKCERVEDAYDVFQGMPVRNFVSWNALIDGFVQVGDRDTAFWLLDCMQKEGVR 200

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
               T   +L      +  +    +H      G +F + L  A +  Y EC       R+
Sbjct: 201 VEDGTFAPLLTLLDGDKFYKLTMQLHCKIIKHGLEFYNALCNATLTAYSECGLLEDAKRV 260

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
                  +D+V W+S++  Y       +A  LF  M+    EP+  T   ++S+C   + 
Sbjct: 261 FDGAVGTRDLVTWNSMLVAYLVHDKDEDAFNLFLEMQGFGFEPDIYTYTCVISACFAAAH 320

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCG--SITSSHQIFNEMAARDFVSWTTLI 406
            ++G   H  ++K GL   V+I NAL+ MY K    S+ ++  +F+ M ++D VSW +++
Sbjct: 321 KNYGKSFHALVIKRGLEESVTICNALITMYLKLNNKSMEAALNLFHSMKSKDRVSWNSIL 380

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI 466
           +G+   G+ E+AL+LF  M+ S  E D     A+L +C+   +++  + +    +   K 
Sbjct: 381 TGFSQMGFSEDALKLFGHMRSSLEEIDDYAYSAVLRSCSDLAILQLGQQIH---LLTVKT 437

Query: 467 ALAIEHY--ACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEML 524
                 +  +  + +  K G IEDA K       K S+   +S++ A   HG+ +VA  L
Sbjct: 438 GFDSNDFVASSLIFMYSKCGIIEDAWKCFED-TTKESSITWNSIMFAYAQHGQGDVALDL 496

Query: 525 AHQLIEAEPE-NAANYTLLSMVCSESG 550
              + E E + +   +  +   CS  G
Sbjct: 497 FSIMREREVKLDHVTFVAVLTACSHVG 523


>gi|296081839|emb|CBI20844.3| unnamed protein product [Vitis vinifera]
          Length = 700

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 168/551 (30%), Positives = 300/551 (54%), Gaps = 7/551 (1%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEM 89
           L +V+KAC         G  +H  A+K G D+D  +S S + MY K    + A   FD++
Sbjct: 149 LATVLKACG-GLGCSRIGKCVHGYAVKIGFDSDLFVSGSTVYMYCKCGILDMAGLAFDQI 207

Query: 90  PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGR 149
             +D ++WN++I  + QN +   ++E+F +M L GF         ++   + + +  +GR
Sbjct: 208 ENKDIVAWNTMITGYAQNCYEEEAIELFYQMELEGFKPNDTTFCCVLKASTAMSDSAVGR 267

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
             HA V+  G   + VFV+TAL+D+YSK +      R F +M  RN VS+ A+I+G    
Sbjct: 268 CFHAKVLKLGC-SMDVFVATALVDMYSKFYDIEDVERAFGEMSKRNLVSFNALITGYSLM 326

Query: 210 QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS 269
             Y+  + ++  +Q EG++P   T   +  +C+    +  G  +H ++   G D D  + 
Sbjct: 327 GKYEEALRVYSQLQSEGMEPDSFTFVGLFSSCSVSSTVAEGAQVHVHSVKFGLDSDVSVG 386

Query: 270 AALMHMYCEC--TEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
            ++++ Y +C  T++   A   FE     + V W+ II G++Q+G+  +A+  F +MR  
Sbjct: 387 NSIVNFYSKCGFTDSALEA---FESINRPNSVCWAGIISGFAQNGEGEKALMQFCKMRKF 443

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
             + +  +  +++ + +  + +  G  +H ++MK+GL+  + +G+A+++MYSKCG +  +
Sbjct: 444 IDKTDEFSSSSVIKAVSSWAAVEQGRHLHAHVMKSGLDCTIYVGSAVIDMYSKCGMVEDA 503

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHA 447
            ++F+ M  ++ VSW ++I+GY  +G+ +EAL LF EM  SG+ P A+T + IL AC+HA
Sbjct: 504 QKVFSVMPEKNVVSWNSMITGYAQNGFCKEALLLFQEMTSSGILPTAVTFVGILFACSHA 563

Query: 448 GLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSS 507
           GLV+E    +N ++    I  ++EH  C VDLLG++G +E+A   + +        I  S
Sbjct: 564 GLVEEGRNFYNLMVHNYGIPPSMEHCTCMVDLLGRAGYLEEAEAFLLSSSFSKEPGIWGS 623

Query: 508 LVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567
           L+SAC +H   +V    A   +  EP  +++YT LS + +    W     +  +M+  G+
Sbjct: 624 LLSACGVHKNSDVGSRAAQHCLFLEPHYSSSYTALSNIYASKELWSEVSRIRDLMKDMGV 683

Query: 568 SKSYGFSRIEN 578
            K  G S IE+
Sbjct: 684 EKEPGCSWIES 694



 Score =  245 bits (626), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 156/496 (31%), Positives = 260/496 (52%), Gaps = 9/496 (1%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           +Q L  + Q L  +G+  N     + I ACA + T       LHC  LK G      +S+
Sbjct: 23  DQALSCFLQMLR-AGIEPNAITYSATISACAQS-TRPSLATSLHCLILKKGFSNQLFVSS 80

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC---- 123
            LISMY+K  + + A  LFD+MP RD +SWNS+I  ++Q G    +  +F  M       
Sbjct: 81  GLISMYSKHDRIKEARFLFDDMPERDDVSWNSMIAGYSQRGLNEEACGLFCSMINSCENW 140

Query: 124 GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
             ++    LA ++  C  +G   +G+ +H   +  G F+  +FVS + + +Y KC    +
Sbjct: 141 KLLVSDFTLATVLKACGGLGCSRIGKCVHGYAVKIG-FDSDLFVSGSTVYMYCKCGILDM 199

Query: 184 ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
           A   F+Q+  ++ V+W  MI+G   +   +  I+LF  M+ EG KP   T   VL A   
Sbjct: 200 AGLAFDQIENKDIVAWNTMITGYAQNCYEEEAIELFYQMELEGFKPNDTTFCCVLKASTA 259

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
           + D   G+  H      G   D  ++ AL+ MY +  +     R   E +K +++V +++
Sbjct: 260 MSDSAVGRCFHAKVLKLGCSMDVFVATALVDMYSKFYDIEDVERAFGEMSK-RNLVSFNA 318

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           +I GYS  G   EA++++S+++ E +EP+S T + + SSC+  S ++ G  VH + +K G
Sbjct: 319 LITGYSLMGKYEEALRVYSQLQSEGMEPDSFTFVGLFSSCSVSSTVAEGAQVHVHSVKFG 378

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
           L+ DVS+GN+++N YSKCG   S+ + F  +   + V W  +ISG+  +G GE+AL  F 
Sbjct: 379 LDSDVSVGNSIVNFYSKCGFTDSALEAFESINRPNSVCWAGIISGFAQNGEGEKALMQFC 438

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS 483
           +M++   + D  +  +++ A +    V++   L  +VMK   +   I   +  +D+  K 
Sbjct: 439 KMRKFIDKTDEFSSSSVIKAVSSWAAVEQGRHLHAHVMK-SGLDCTIYVGSAVIDMYSKC 497

Query: 484 GKIEDACKVVSTMPMK 499
           G +EDA KV S MP K
Sbjct: 498 GMVEDAQKVFSVMPEK 513



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 123/365 (33%), Positives = 195/365 (53%), Gaps = 6/365 (1%)

Query: 93  DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIH 152
           + + W S I    + G   ++L  F +M   G    A   +  IS C+Q     L   +H
Sbjct: 5   NVVRWTSKITDNARRGLVDQALSCFLQMLRAGIEPNAITYSATISACAQSTRPSLATSLH 64

Query: 153 ALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNY 212
            L++  G F   +FVS+ L+ +YSK      A  +F+ M  R++VSW +MI+G       
Sbjct: 65  CLILKKG-FSNQLFVSSGLISMYSKHDRIKEARFLFDDMPERDDVSWNSMIAGYSQRGLN 123

Query: 213 DTGIDLFRAM----QREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHL 268
           +    LF +M    +   +  +  TL  VL AC  L   R GK +HGYA   GFD D  +
Sbjct: 124 EEACGLFCSMINSCENWKLLVSDFTLATVLKACGGLGCSRIGKCVHGYAVKIGFDSDLFV 183

Query: 269 SAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER 328
           S + ++MYC+C   L  A + F++ + KD+V W+++I GY+Q+    EA++LF +M LE 
Sbjct: 184 SGSTVYMYCKCG-ILDMAGLAFDQIENKDIVAWNTMITGYAQNCYEEEAIELFYQMELEG 242

Query: 329 IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSH 388
            +PN  T   +L + T  S  + G   H  ++K G + DV +  AL++MYSK   I    
Sbjct: 243 FKPNDTTFCCVLKASTAMSDSAVGRCFHAKVLKLGCSMDVFVATALVDMYSKFYDIEDVE 302

Query: 389 QIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG 448
           + F EM+ R+ VS+  LI+GY   G  EEAL+++ ++Q  G+EPD+ T + + S+C+ + 
Sbjct: 303 RAFGEMSKRNLVSFNALITGYSLMGKYEEALRVYSQLQSEGMEPDSFTFVGLFSSCSVSS 362

Query: 449 LVKEA 453
            V E 
Sbjct: 363 TVAEG 367



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/372 (26%), Positives = 174/372 (46%), Gaps = 30/372 (8%)

Query: 191 MVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNG 250
           M+  N V WT+ I+        D  +  F  M R G++P  +T +  + ACA+       
Sbjct: 1   MLETNVVRWTSKITDNARRGLVDQALSCFLQMLRAGIEPNAITYSATISACAQSTRPSLA 60

Query: 251 KAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQ 310
            ++H      GF     +S+ L+ MY +  + +  AR +F+    +D V W+S+I GYSQ
Sbjct: 61  TSLHCLILKKGFSNQLFVSSGLISMYSK-HDRIKEARFLFDDMPERDDVSWNSMIAGYSQ 119

Query: 311 SGDLSEAMKLFSRM----RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
            G   EA  LF  M       ++  +  TL  +L +C        G  VH Y +K G + 
Sbjct: 120 RGLNEEACGLFCSMINSCENWKLLVSDFTLATVLKACGGLGCSRIGKCVHGYAVKIGFDS 179

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           D+ +  + + MY KCG +  +   F+++  +D V+W T+I+GY  + Y EEA++LF +M+
Sbjct: 180 DLFVSGSTVYMYCKCGILDMAGLAFDQIENKDIVAWNTMITGYAQNCYEEEAIELFYQME 239

Query: 427 ESGVEPDAITVLAILSA-----------CNHAGLVKEAETLFNNVMKEKKIALAIEHYAC 475
             G +P+  T   +L A           C HA ++K   ++      +  +A A+     
Sbjct: 240 LEGFKPNDTTFCCVLKASTAMSDSAVGRCFHAKVLKLGCSM------DVFVATAL----- 288

Query: 476 YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPEN 535
            VD+  K   IED  +    M  K +    ++L++   + G+ E A  +  QL ++E   
Sbjct: 289 -VDMYSKFYDIEDVERAFGEMS-KRNLVSFNALITGYSLMGKYEEALRVYSQL-QSEGME 345

Query: 536 AANYTLLSMVCS 547
             ++T + +  S
Sbjct: 346 PDSFTFVGLFSS 357


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  289 bits (739), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 158/486 (32%), Positives = 265/486 (54%), Gaps = 4/486 (0%)

Query: 94  TISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHA 153
           +  WN+ +    +   ++++L ++ +M   G    A      +  C+ +    LG Q H 
Sbjct: 5   STPWNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHG 64

Query: 154 LVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE--VSWTAMISGCIDSQN 211
            +   G      FV T L+ +Y K      A +VFE+     +  V + A++SG + +  
Sbjct: 65  QITKVGCV-FEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSK 123

Query: 212 YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAA 271
               + LFR M  EGV    VTL  ++ AC    +L  G ++H      GFD D  +   
Sbjct: 124 CSDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNC 183

Query: 272 LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP 331
            + MY +C  +++ A+ +F+   VK ++ W++++ GY+Q+G  +  ++L+  M +  + P
Sbjct: 184 FITMYMKCG-SVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHP 242

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIF 391
           + VTL+ +LSSC      S G  V   +  +G   +  + NAL+NMY++CG++T +  +F
Sbjct: 243 DPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVF 302

Query: 392 NEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVK 451
           + M  R  VSWT +I GYG HG+GE A+QLF EM  SG+EPD    + +LSAC+HAGL  
Sbjct: 303 DGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTD 362

Query: 452 EAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSA 511
           +    F  + +  ++    EHY+C VDLLG++G++++A  ++ +MP+KP   +  +L+ A
Sbjct: 363 QGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGA 422

Query: 512 CRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSY 571
           C+IH  +E+AE+   ++IE EPEN   Y LLS + S + N  G   +  +M+ K L K  
Sbjct: 423 CKIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDP 482

Query: 572 GFSRIE 577
           G S +E
Sbjct: 483 GCSYVE 488



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 137/486 (28%), Positives = 224/486 (46%), Gaps = 28/486 (5%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           Q L LY Q L   G   N    P  +K+CA A +    G Q H    K G   +P +   
Sbjct: 23  QALSLYPQMLR-HGDRPNAFTFPFALKSCA-ALSLPILGSQFHGQITKVGCVFEPFVQTG 80

Query: 69  LISMYAKFSKPESAYQLFDEMPY--RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           LISMY K S  ++A ++F+E  +  + T+ +N++++ +  N     ++ +FR+M   G  
Sbjct: 81  LISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDAVLLFRQMNEEGVP 140

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
           + +  L G+I  C     LELG  +H   +  G F+  V V    + +Y KC     A +
Sbjct: 141 VNSVTLLGLIPACVSPINLELGSSLHCSTLKYG-FDSDVSVVNCFITMYMKCGSVNYAQK 199

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           +F++M ++  +SW AM+SG   +      ++L+R M   GV P  VTL  VL +CA L  
Sbjct: 200 LFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGA 259

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
              G  +       GF  +  L+ AL++MY  C   L  A+ +F+    + +V W++II 
Sbjct: 260 QSVGHEVEFKMQASGFTSNPFLNNALINMYARCGN-LTKAQAVFDGMPERTLVSWTAIIG 318

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           GY   G    A++LF  M    IEP+    + +LS+C+       GL    Y      N+
Sbjct: 319 GYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLE---YFKMMKRNY 375

Query: 367 DVSIG----NALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFHGYGEEALQL 421
            +  G    + ++++  + G +  +  +   M  + D   W  L+     H   E A   
Sbjct: 376 QLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELA 435

Query: 422 FLEMQESGVEPDAITVLAILS-----ACNHAGLVKEAETLFNNVMKEKKIALAIEHYACY 476
           F  + E  +EP+ I    +LS     A N  G+++        +MKEKK  L  +    Y
Sbjct: 436 FERVIE--LEPENIGYYVLLSNIYSNANNSKGVLR-----IRIMMKEKK--LKKDPGCSY 486

Query: 477 VDLLGK 482
           V+L G+
Sbjct: 487 VELKGR 492


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  289 bits (739), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 170/586 (29%), Positives = 298/586 (50%), Gaps = 33/586 (5%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G+  N    P V+  C         G+Q+H + +K G + D  I N LI  YA+    + 
Sbjct: 126 GVTPNHYTFPFVLSGCTKIAAFCE-GIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDH 184

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
            +++F+ M  R+ +SW S+I  + +      ++ +F EM   G    +  +  +IS C++
Sbjct: 185 GHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAK 244

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
           + +L++G ++ A  I +   +L+  +  AL+D+Y KC     A R+F++ V RN V +  
Sbjct: 245 LRDLDMGERVCAY-IGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNT 303

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           ++S           + +   M ++G +P RVT+   + A A+L DL  GK  HGY    G
Sbjct: 304 ILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNG 363

Query: 262 FDFDHHLSAALMHMYCECTEALHPARI------------------------------IFE 291
            +    +   ++ MY +C +     R+                              +F 
Sbjct: 364 LEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFN 423

Query: 292 RTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSH 351
           +   ++ V W+++I G  Q     +A++LF  M+ E I+ + VT++ I S+C        
Sbjct: 424 QIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLGAPEL 483

Query: 352 GLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGF 411
              VH YI K G+  D+ +  AL++M+++CG   S+ Q+FN+M  RD  +WT  I     
Sbjct: 484 AKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAM 543

Query: 412 HGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIE 471
            G GE A  LF +M   GV+PD +  + +L+AC+H G V++   +F+ +M++  I+  IE
Sbjct: 544 EGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFS-LMEDHGISPQIE 602

Query: 472 HYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA 531
           HY C VDLLG++G + +A  ++ +MPM+P+  +  SL++ACR+H  +E+A   A ++ E 
Sbjct: 603 HYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINEL 662

Query: 532 EPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            P+ A  + LLS + + +G W     V   +R KG+ K  G S ++
Sbjct: 663 APQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQ 708



 Score =  212 bits (540), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 150/560 (26%), Positives = 263/560 (46%), Gaps = 44/560 (7%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPES------AYQLFDEMPYRDTISW--NSI 100
           QLHC   K+G D  P     L++  A+ + PES      A++LF E    D   +  NS+
Sbjct: 43  QLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVRSDDALFMLNSL 102

Query: 101 INCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGS 160
           I  ++  G    ++ ++  M + G          ++S C++I     G Q+H  V+  G 
Sbjct: 103 IRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKMG- 161

Query: 161 FELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFR 220
            E  VF+   L+  Y++C H     +VFE M  RN VSWT++I G          + LF 
Sbjct: 162 LEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFF 221

Query: 221 AMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECT 280
            M   G++P+ VT+  V+ ACA+LRDL  G+ +  Y    G   +  +  AL+ MY +C 
Sbjct: 222 EMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCG 281

Query: 281 EALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAIL 340
            A+  A+ +F+    +++V++++I+  Y++ G   EA+ +   M  +   P+ VT+L+ +
Sbjct: 282 -AIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAI 340

Query: 341 SSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC------------------- 381
           S+  +   L +G   H Y+++ GL    SIGN +++MY KC                   
Sbjct: 341 SASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVV 400

Query: 382 ------------GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
                       G + S+ ++FN++  R+ V W T+ISG       E+A++LF EMQ  G
Sbjct: 401 SWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEG 460

Query: 430 VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
           ++ D +T++ I SAC + G   E     +  +++  I   +      VD+  + G  + A
Sbjct: 461 IKADRVTMMGIASACGYLG-APELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSA 519

Query: 490 CKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQ-LIEAEPENAANYTLLSMVCSE 548
            +V + M  +      ++ +    + G  E A  L +Q LI+    +   +  +   CS 
Sbjct: 520 MQVFNKMTER-DVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSH 578

Query: 549 SGNWLGAEEVWRVMRAKGLS 568
            G       ++ +M   G+S
Sbjct: 579 GGQVEQGLHIFSLMEDHGIS 598


>gi|449436034|ref|XP_004135799.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 706

 Score =  289 bits (739), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 165/545 (30%), Positives = 292/545 (53%), Gaps = 4/545 (0%)

Query: 34  IKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRD 93
           +KAC +   ++  G+++   A+  G      + +S+++   K      A   F +M  +D
Sbjct: 162 LKACMFLLDYE-MGMEVIGLAVCKGLAGGRFLGSSILNFLVKTGDIMCAQFFFHQMVEKD 220

Query: 94  TISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHA 153
            + WN +I  F Q G +     +F +M        A  +  +I  C ++  L  G+ +H 
Sbjct: 221 VVCWNVMIGGFMQEGLFREGYNLFLDMLYNKIEPSAVTMISLIQSCGEMRNLTFGKCMHG 280

Query: 154 LVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYD 213
            V+  G       V T L+D+Y K      A  +FE M  RN VSW  MISG + +    
Sbjct: 281 FVLGFG-MSRDTRVLTTLIDMYCKSGDVESARWIFENMPSRNLVSWNVMISGYVQNGLLV 339

Query: 214 TGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALM 273
             + LF+ +  + V     T+  ++  C+   DL  GK +HG+ Y  G D +  L  A++
Sbjct: 340 ETLRLFQKLIMDDVGFDSGTVVSLIQLCSRTADLDGGKILHGFIYRRGLDLNLVLPTAIV 399

Query: 274 HMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNS 333
            +Y +C  +L  A  +FER K K+V+ W++++ G +Q+G   +A+KLF +M+ ER+  N+
Sbjct: 400 DLYAKCG-SLAYASSVFERMKNKNVISWTAMLVGLAQNGHARDALKLFDQMQNERVTFNA 458

Query: 334 VTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFN- 392
           +TL++++  CT    L  G  VH  + +     +V +  AL++MY+KC  I S+  +F  
Sbjct: 459 LTLVSLVYCCTLLGLLREGRSVHATLTRFHFASEVVVMTALIDMYAKCSKINSAEMVFKY 518

Query: 393 EMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKE 452
            +  +D + + ++ISGYG HG G +AL ++  M   G++P+  T +++LSAC+H+GLV+E
Sbjct: 519 GLTPKDVILYNSMISGYGMHGLGHKALCVYHRMNREGLQPNESTFVSLLSACSHSGLVEE 578

Query: 453 AETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSAC 512
              LF N++K+       + YAC VDLL ++G++  A ++++ MP  P++ IL +L++ C
Sbjct: 579 GIALFQNMVKDHNTTPTDKLYACIVDLLSRAGRLRQAEELINQMPFTPTSGILETLLNGC 638

Query: 513 RIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYG 572
            +H  +E+   LA +L+  E  N + Y  LS + +++  W   + V  +M  + + K  G
Sbjct: 639 LLHKDIELGVKLADRLLSLESRNPSIYITLSNIYAKASRWDSVKYVRGLMMEQEIKKIPG 698

Query: 573 FSRIE 577
           +S IE
Sbjct: 699 YSSIE 703



 Score =  221 bits (563), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 137/501 (27%), Positives = 260/501 (51%), Gaps = 24/501 (4%)

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
            D  +   L++ Y+     E+A ++FDE+P   T+  N+++N + QN  Y   +E+ + M
Sbjct: 87  GDQFLVAKLVAAYSSLGCLENARKVFDEIPQPKTVLCNAMVNGYLQNERYNDCIELLKMM 146

Query: 121 ---------YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTAL 171
                    Y C F LKA         C  + + E+G ++  L +  G      F+ +++
Sbjct: 147 SRCHLEFDSYTCNFALKA---------CMFLLDYEMGMEVIGLAVCKG-LAGGRFLGSSI 196

Query: 172 LDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTR 231
           L+   K    + A   F QMV ++ V W  MI G +    +  G +LF  M    ++P+ 
Sbjct: 197 LNFLVKTGDIMCAQFFFHQMVEKDVVCWNVMIGGFMQEGLFREGYNLFLDMLYNKIEPSA 256

Query: 232 VTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFE 291
           VT+  ++ +C E+R+L  GK +HG+    G   D  +   L+ MYC+  + +  AR IFE
Sbjct: 257 VTMISLIQSCGEMRNLTFGKCMHGFVLGFGMSRDTRVLTTLIDMYCKSGD-VESARWIFE 315

Query: 292 RTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSH 351
               +++V W+ +I GY Q+G L E ++LF ++ ++ +  +S T+++++  C+R + L  
Sbjct: 316 NMPSRNLVSWNVMISGYVQNGLLVETLRLFQKLIMDDVGFDSGTVVSLIQLCSRTADLDG 375

Query: 352 GLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGF 411
           G  +H +I + GL+ ++ +  A++++Y+KCGS+  +  +F  M  ++ +SWT ++ G   
Sbjct: 376 GKILHGFIYRRGLDLNLVLPTAIVDLYAKCGSLAYASSVFERMKNKNVISWTAMLVGLAQ 435

Query: 412 HGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIE 471
           +G+  +AL+LF +MQ   V  +A+T+++++  C   GL++E  ++ +  +     A  + 
Sbjct: 436 NGHARDALKLFDQMQNERVTFNALTLVSLVYCCTLLGLLREGRSV-HATLTRFHFASEVV 494

Query: 472 HYACYVDLLGKSGKIEDACKVVSTMPMKPSTRIL-SSLVSACRIHGRLEVAEMLAHQL-I 529
                +D+  K  KI  A ++V    + P   IL +S++S   +HG    A  + H++  
Sbjct: 495 VMTALIDMYAKCSKINSA-EMVFKYGLTPKDVILYNSMISGYGMHGLGHKALCVYHRMNR 553

Query: 530 EAEPENAANYTLLSMVCSESG 550
           E    N + +  L   CS SG
Sbjct: 554 EGLQPNESTFVSLLSACSHSG 574


>gi|414881651|tpg|DAA58782.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 736

 Score =  289 bits (739), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 182/572 (31%), Positives = 296/572 (51%), Gaps = 22/572 (3%)

Query: 21  SGLYSNTAILPS-------------VIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           S + S  A+LPS             V  A A A TH      L C    S    +  +S 
Sbjct: 108 SMMSSPEAVLPSPHSFAAAFTAAARVPSASAGAVTHA-----LACKLPSSCGSNNVFVST 162

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +L++MY K      A ++FD M +R+ +SW ++++ +        + E+FR M     + 
Sbjct: 163 ALLNMYCKLGAVSDAKRVFDGMLHRNAVSWAAMVSGYATGKCSEEAFELFRLMLQKCPLE 222

Query: 128 KAELLA-GIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
           K E +   ++S  S    L +G Q+H LV+ DG     V V  +L+ +Y+K      A+R
Sbjct: 223 KNEFVTTAVLSAVSVPLGLLMGTQLHGLVLKDGLVGF-VSVENSLVTMYAKAECMDAAMR 281

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VF     RN ++W+AMI+G   +   +    +F  M   G  PT  T   VL AC+++  
Sbjct: 282 VFGSSKERNSITWSAMITGYAQNGEANCAARMFLQMHSSGFTPTEFTFVGVLNACSDMGA 341

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERT-KVKDVVIWSSII 305
           L  GK  H      GF+   ++ +AL+ MY +C   +  A+  F +   V DVV+W+++I
Sbjct: 342 LVVGKQTHCLMVKLGFETQVYVKSALVDMYAKCG-CIGDAKDGFHQLYDVDDVVLWTAMI 400

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
            G+ Q+G+  EA+ L+SRM  + I P+ +T+ ++L +C   + L  G  +H  I+K   +
Sbjct: 401 TGHVQNGEHEEALMLYSRMDKQGIIPSYLTVTSVLRACACLAALDLGKQLHAQILKCRFS 460

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
              S+G AL  MYSKCG++  S  +F  M  RD +SW ++IS +  HG G +AL +F EM
Sbjct: 461 LGGSVGTALSTMYSKCGNLEDSMVVFRRMPDRDVISWNSIISVFSQHGRGSDALDMFEEM 520

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
           +  G  PD IT + +LSAC+H GLV      F  + K+  +   ++HYAC VD+L ++G+
Sbjct: 521 KLEGTAPDHITFINLLSACSHMGLVDRGWFYFRAMTKDYNLIPTLDHYACMVDILSRAGQ 580

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV 545
           +++A   + ++ +   T +   ++ ACR     +V      QL+E   E+++ Y LLS +
Sbjct: 581 LKEAKDFIDSITIDHGTCLWRIVLGACRSLRDFDVGAYAGEQLMELGTEDSSAYILLSNI 640

Query: 546 CSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +    W   E V  +MR +G+SK  G S +E
Sbjct: 641 YAAQRKWNDVERVRHLMRLRGVSKDLGCSWVE 672



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 163/572 (28%), Positives = 268/572 (46%), Gaps = 20/572 (3%)

Query: 20  PSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKP 79
           P  L  + A     ++  A +      G  LH  ALKSG+ +   +SNSLI+ Y    +P
Sbjct: 6   PRALRMSHAQFIEHLRCAASSDRTPRTGEALHGWALKSGAASHAPVSNSLITFYCSLPRP 65

Query: 80  --ESAYQLFDEMP--YRDTISWNSIINCFTQNGFYVRSLEMFREMYLC--GFVLKAELLA 133
              +AY +F ++P   RD  SWNS++N  +++   V +L  FR M       +      A
Sbjct: 66  LLGAAYVVFADIPAALRDVASWNSLLNPLSRH-HPVSALSHFRSMMSSPEAVLPSPHSFA 124

Query: 134 GIISLCSQIGELELGRQIHALV--IVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM 191
              +  +++     G   HAL   +       +VFVSTALL++Y K      A RVF+ M
Sbjct: 125 AAFTAAARVPSASAGAVTHALACKLPSSCGSNNVFVSTALLNMYCKLGAVSDAKRVFDGM 184

Query: 192 VIRNEVSWTAMISGCIDSQNYDTGIDLFRAM-QREGVKPTRVTLTIVLLACAELRDLRNG 250
           + RN VSW AM+SG    +  +   +LFR M Q+  ++      T VL A +    L  G
Sbjct: 185 LHRNAVSWAAMVSGYATGKCSEEAFELFRLMLQKCPLEKNEFVTTAVLSAVSVPLGLLMG 244

Query: 251 KAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQ 310
             +HG     G      +  +L+ MY +  E +  A  +F  +K ++ + WS++I GY+Q
Sbjct: 245 TQLHGLVLKDGLVGFVSVENSLVTMYAK-AECMDAAMRVFGSSKERNSITWSAMITGYAQ 303

Query: 311 SGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSI 370
           +G+ + A ++F +M      P   T + +L++C+    L  G   HC ++K G    V +
Sbjct: 304 NGEANCAARMFLQMHSSGFTPTEFTFVGVLNACSDMGALVVGKQTHCLMVKLGFETQVYV 363

Query: 371 GNALMNMYSKCGSITSSHQIFNEM-AARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
            +AL++MY+KCG I  +   F+++    D V WT +I+G+  +G  EEAL L+  M + G
Sbjct: 364 KSALVDMYAKCGCIGDAKDGFHQLYDVDDVVLWTAMITGHVQNGEHEEALMLYSRMDKQG 423

Query: 430 VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
           + P  +TV ++L AC     +   + L   ++K  + +L          +  K G +ED+
Sbjct: 424 IIPSYLTVTSVLRACACLAALDLGKQLHAQILK-CRFSLGGSVGTALSTMYSKCGNLEDS 482

Query: 490 CKVVSTMPMKPSTRILSSLVSACRIHGRLEVA-EMLAHQLIEAEPENAANYTLLSMVCSE 548
             V   MP +      +S++S    HGR   A +M     +E    +   +  L   CS 
Sbjct: 483 MVVFRRMPDRDVIS-WNSIISVFSQHGRGSDALDMFEEMKLEGTAPDHITFINLLSACSH 541

Query: 549 SGNWLGAEEVWRVMRAKGLSKSYGFSRIENEY 580
            G     +  W   RA  ++K Y      + Y
Sbjct: 542 MGL---VDRGWFYFRA--MTKDYNLIPTLDHY 568


>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 591

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 157/481 (32%), Positives = 259/481 (53%), Gaps = 2/481 (0%)

Query: 98  NSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIV 157
           N+II   ++N   +  +E   EM + G       +  ++   + I  +  G+QIHA  I 
Sbjct: 79  NAIIRSISRNSINLSPMEFLNEMLVVGLEPDGFTIPLVLKALALIQGIREGQQIHARSIK 138

Query: 158 DGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGID 217
            G    +V+VS  L+ LYS C       +VF++   R+ VSWT +I     +  Y   ++
Sbjct: 139 TGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTTLIQAFTKAGLYSRAVE 198

Query: 218 LFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY-AYCCGFDFDHHLSAALMHMY 276
            F  M    ++    TL +VL AC+ L DL  G+ +H Y  +      D  +  AL+ MY
Sbjct: 199 AFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRHYIDMKADVFVGNALLDMY 258

Query: 277 CECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTL 336
            +C + L+ A  +F+   VK+VV W+++I G +  G   EA+  F  M+ + ++P+ VTL
Sbjct: 259 LKCDD-LNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTL 317

Query: 337 LAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA 396
           + +L+SC     L  G  VH Y+ +  +  D  +GNAL++MY+KCGSI  + ++F  M  
Sbjct: 318 VGVLNSCANLGVLEIGKWVHAYMRRNHILADKFVGNALLDMYAKCGSIDEAFRVFESMKR 377

Query: 397 RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETL 456
           RD  S+T +I G   HG    A Q+F EM   G+EP+ +T L +L AC+H GLV E +  
Sbjct: 378 RDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKY 437

Query: 457 FNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG 516
           F  +  + K+    EHY C +DLLG++G +++A +++  M ++P      +L+ ACRIHG
Sbjct: 438 FFQMSDKYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGACRIHG 497

Query: 517 RLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
            +++ E +  +L E +P+    Y L++ + S    W  A ++ + M+ K + K+ G S I
Sbjct: 498 NVDIGESVMQKLTELDPDEEGTYILMTNLYSSVHRWKDALKIRKTMKNKKMRKTPGCSLI 557

Query: 577 E 577
           E
Sbjct: 558 E 558



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 3/210 (1%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           Y + L  ++  +   G+  +   L  V+ +CA     +  G  +H    ++   AD  + 
Sbjct: 295 YREALDTFRM-MQDKGVKPDEVTLVGVLNSCANLGVLE-IGKWVHAYMRRNHILADKFVG 352

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           N+L+ MYAK    + A+++F+ M  RD  S+ ++I     +G    + ++F EM+  G  
Sbjct: 353 NALLDMYAKCGSIDEAFRVFESMKRRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIE 412

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
                  G++  CS  G +  G++    +               ++DL  +      A  
Sbjct: 413 PNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQAEHYGCMIDLLGRAGLVKEAEE 472

Query: 187 VFEQMVIRNEV-SWTAMISGCIDSQNYDTG 215
           +  +M IR +V +  A++  C    N D G
Sbjct: 473 IIHKMEIRPDVFACGALLGACRIHGNVDIG 502


>gi|302815759|ref|XP_002989560.1| hypothetical protein SELMODRAFT_129917 [Selaginella moellendorffii]
 gi|300142738|gb|EFJ09436.1| hypothetical protein SELMODRAFT_129917 [Selaginella moellendorffii]
          Length = 744

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 167/504 (33%), Positives = 276/504 (54%), Gaps = 11/504 (2%)

Query: 46  FGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT 105
            G  +H    + G      + N+LISMY K    E + ++F+ M  +D +SW ++I  + 
Sbjct: 228 LGRSIHLRVTRGGDGGGTRLENALISMYGKLENLEESLRVFEAMANKDVVSWTAMITAYA 287

Query: 106 QNGFYVRSLEMFREMYLCGFVLKAELL-AGIISLCSQIGELELGRQIHALVIVDGSFELS 164
           QNG    +LE++R M L   V    +  A ++  CS +G+L  G++I+A V     F++ 
Sbjct: 288 QNGRERLALELYRRMELEKRVRPDRVTYAAVLGACSGLGDLSTGKEIYARV-CSSDFDVD 346

Query: 165 VFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR 224
             + T+L+ L+ KCH    A  VFE +  R+ +++ AM++    + + D  ++L+R M  
Sbjct: 347 AALKTSLVGLHGKCHCLEDAKEVFESISSRDRLAYNAMLAAYAQNGHPDDALNLYRQMMD 406

Query: 225 -EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEAL 283
            EGV+PT  +  + L+AC  L+DL  GK++HG     G   D  L+  L+  Y E   +L
Sbjct: 407 LEGVEPTDTSFAVALMACTALKDLVTGKSLHGRIQVAGIKLDEVLATTLVGFYGEVG-SL 465

Query: 284 HPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC 343
             A  IFE+  VKDV  +S++I  YSQ+G    AM +++ M  + I+P+ V  +++LS+C
Sbjct: 466 EEAERIFEQMPVKDVFSYSAMIGAYSQNGCEGRAMTIYAEMDQQGIKPDEVAFISVLSAC 525

Query: 344 TRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWT 403
           +          VH  I+ AG   D ++G AL+ MY+K G++  S +IF  M +RD VSWT
Sbjct: 526 SSNLATE----VHTEILHAGFEADGALGTALVCMYAKSGNLEESRRIFGAMKSRDSVSWT 581

Query: 404 TLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKE 463
            +IS +  HG   EA  LF  M   G++    T+ ++L + + +G V  A   F  +  +
Sbjct: 582 AMISAFARHGC--EAKLLFQGMALDGIDAKGSTLTSMLVSYSQSG-VDAARGFFMAMQGD 638

Query: 464 KKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEM 523
                A EHY+C VDLL +SG++ +A ++V +MP++P      +L+ AC+ HG LE A+ 
Sbjct: 639 FGTCPAAEHYSCLVDLLARSGRVGEAKELVDSMPLEPDFVPWMTLLGACKTHGDLEQAKS 698

Query: 524 LAHQLIEAEPENAANYTLLSMVCS 547
            A  ++E +  +   Y + S +CS
Sbjct: 699 AARGVLEVDSHSPGAYLVSSTLCS 722



 Score =  235 bits (599), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 156/526 (29%), Positives = 261/526 (49%), Gaps = 14/526 (2%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           N+     V++AC+ A      G  +  +   S    D V+  +++ MY +    E A Q 
Sbjct: 108 NSVTFLGVLEACS-ALGDLDLGRTVDSSIAGSEWRDDVVVGTAVVGMYGRCRSIEDARQR 166

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL 145
           FD MP ++ +SWN+++  + +NG    +L   REM L G  L       +I + +Q+G L
Sbjct: 167 FDSMPVKNVVSWNALVTSYARNGHPCGALRALREMDLDGTKLNPVTFLLVIEVATQLGSL 226

Query: 146 ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISG 205
            LGR IH L +  G       +  AL+ +Y K  +   +LRVFE M  ++ VSWTAMI+ 
Sbjct: 227 SLGRSIH-LRVTRGGDGGGTRLENALISMYGKLENLEESLRVFEAMANKDVVSWTAMITA 285

Query: 206 CIDSQNYDTGIDLFRAMQREG-VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDF 264
              +      ++L+R M+ E  V+P RVT   VL AC+ L DL  GK I+       FD 
Sbjct: 286 YAQNGRERLALELYRRMELEKRVRPDRVTYAAVLGACSGLGDLSTGKEIYARVCSSDFDV 345

Query: 265 DHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM 324
           D  L  +L+ ++ +C   L  A+ +FE    +D + +++++  Y+Q+G   +A+ L+ +M
Sbjct: 346 DAALKTSLVGLHGKC-HCLEDAKEVFESISSRDRLAYNAMLAAYAQNGHPDDALNLYRQM 404

Query: 325 -RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS 383
             LE +EP   +    L +CT    L  G  +H  I  AG+  D  +   L+  Y + GS
Sbjct: 405 MDLEGVEPTDTSFAVALMACTALKDLVTGKSLHGRIQVAGIKLDEVLATTLVGFYGEVGS 464

Query: 384 ITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
           +  + +IF +M  +D  S++ +I  Y  +G    A+ ++ EM + G++PD +  +++LSA
Sbjct: 465 LEEAERIFEQMPVKDVFSYSAMIGAYSQNGCEGRAMTIYAEMDQQGIKPDEVAFISVLSA 524

Query: 444 CNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTR 503
           C+ + L  E  T   +   E   AL       Y     KSG +E++ ++   M  + S  
Sbjct: 525 CS-SNLATEVHTEILHAGFEADGALGTALVCMYA----KSGNLEESRRIFGAMKSRDSVS 579

Query: 504 ILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSES 549
             ++++SA   HG       L  Q +  +  +A   TL SM+ S S
Sbjct: 580 -WTAMISAFARHG---CEAKLLFQGMALDGIDAKGSTLTSMLVSYS 621



 Score =  205 bits (521), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 134/472 (28%), Positives = 241/472 (51%), Gaps = 8/472 (1%)

Query: 30  LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEM 89
           L S I ACA +      G QLH  A+    D + +++NSLI+MY K      A +LF  +
Sbjct: 13  LVSAISACASSGNLAR-GRQLHAAAIARRLDRETLVANSLIAMYGKCHSLAEAERLFHGL 71

Query: 90  PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGR 149
             +D ++WN++I  FT NG    +++++  M   G       L G++  CS +G+L+LGR
Sbjct: 72  ERKDPVTWNTMIGAFTHNGQPRLAVDLYARMG-SGDRNSVTFL-GVLEACSALGDLDLGR 129

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
            + +  I    +   V V TA++ +Y +C     A + F+ M ++N VSW A+++    +
Sbjct: 130 TVDS-SIAGSEWRDDVVVGTAVVGMYGRCRSIEDARQRFDSMPVKNVVSWNALVTSYARN 188

Query: 210 QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS 269
            +    +   R M  +G K   VT  +V+    +L  L  G++IH      G      L 
Sbjct: 189 GHPCGALRALREMDLDGTKLNPVTFLLVIEVATQLGSLSLGRSIHLRVTRGGDGGGTRLE 248

Query: 270 AALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE-R 328
            AL+ MY +  E L  +  +FE    KDVV W+++I  Y+Q+G    A++L+ RM LE R
Sbjct: 249 NALISMYGKL-ENLEESLRVFEAMANKDVVSWTAMITAYAQNGRERLALELYRRMELEKR 307

Query: 329 IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSH 388
           + P+ VT  A+L +C+    LS G  ++  +  +  + D ++  +L+ ++ KC  +  + 
Sbjct: 308 VRPDRVTYAAVLGACSGLGDLSTGKEIYARVCSSDFDVDAALKTSLVGLHGKCHCLEDAK 367

Query: 389 QIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE-SGVEPDAITVLAILSACNHA 447
           ++F  +++RD +++  +++ Y  +G+ ++AL L+ +M +  GVEP   +    L AC   
Sbjct: 368 EVFESISSRDRLAYNAMLAAYAQNGHPDDALNLYRQMMDLEGVEPTDTSFAVALMACTAL 427

Query: 448 GLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
             +   ++L   + +   I L        V   G+ G +E+A ++   MP+K
Sbjct: 428 KDLVTGKSLHGRI-QVAGIKLDEVLATTLVGFYGEVGSLEEAERIFEQMPVK 478



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 117/409 (28%), Positives = 193/409 (47%), Gaps = 24/409 (5%)

Query: 132 LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM 191
           L   IS C+  G L  GRQ+HA  I     +    V+ +L+ +Y KCH    A R+F  +
Sbjct: 13  LVSAISACASSGNLARGRQLHAAAIAR-RLDRETLVANSLIAMYGKCHSLAEAERLFHGL 71

Query: 192 VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGK 251
             ++ V+W  MI     +      +DL+  M   G + + VT   VL AC+ L DL  G+
Sbjct: 72  ERKDPVTWNTMIGAFTHNGQPRLAVDLYARMG-SGDRNS-VTFLGVLEACSALGDLDLGR 129

Query: 252 AIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQS 311
            +        +  D  +  A++ MY  C  ++  AR  F+   VK+VV W++++  Y+++
Sbjct: 130 TVDSSIAGSEWRDDVVVGTAVVGMYGRC-RSIEDARQRFDSMPVKNVVSWNALVTSYARN 188

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
           G    A++    M L+  + N VT L ++   T+   LS G  +H  + + G      + 
Sbjct: 189 GHPCGALRALREMDLDGTKLNPVTFLLVIEVATQLGSLSLGRSIHLRVTRGGDGGGTRLE 248

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ-ESGV 430
           NAL++MY K  ++  S ++F  MA +D VSWT +I+ Y  +G    AL+L+  M+ E  V
Sbjct: 249 NALISMYGKLENLEESLRVFEAMANKDVVSWTAMITAYAQNGRERLALELYRRMELEKRV 308

Query: 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMKEK-KIALAIEHYACYVDLLGKSGKIEDA 489
            PD +T  A+L AC+  G +   + ++  V      +  A++     V L GK   +EDA
Sbjct: 309 RPDRVTYAAVLGACSGLGDLSTGKEIYARVCSSDFDVDAALK--TSLVGLHGKCHCLEDA 366

Query: 490 CKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAAN 538
            +V  ++  +                 RL    MLA       P++A N
Sbjct: 367 KEVFESISSRD----------------RLAYNAMLAAYAQNGHPDDALN 399



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 90/176 (51%), Gaps = 3/176 (1%)

Query: 324 MRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS 383
           M   RI P+  TL++ +S+C     L+ G  +H   +   L+ +  + N+L+ MY KC S
Sbjct: 1   MEERRILPHRTTLVSAISACASSGNLARGRQLHAAAIARRLDRETLVANSLIAMYGKCHS 60

Query: 384 ITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
           +  + ++F+ +  +D V+W T+I  +  +G    A+ L+  M     + +++T L +L A
Sbjct: 61  LAEAERLFHGLERKDPVTWNTMIGAFTHNGQPRLAVDLYARMGSG--DRNSVTFLGVLEA 118

Query: 444 CNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           C+  G +    T+ +++   +     +   A  V + G+   IEDA +   +MP+K
Sbjct: 119 CSALGDLDLGRTVDSSIAGSEWRDDVVVGTAV-VGMYGRCRSIEDARQRFDSMPVK 173


>gi|297799986|ref|XP_002867877.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297313713|gb|EFH44136.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 760

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 169/533 (31%), Positives = 278/533 (52%), Gaps = 39/533 (7%)

Query: 46  FGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT 105
            G Q+H  AL+ G   +  ++NSL+ +YAK      A  +F EMP  + +SWN +I  F 
Sbjct: 253 LGKQIHSLALRRGFVGELHLNNSLLEIYAKNKDMNGAELIFTEMPEVNVVSWNIMIAGFG 312

Query: 106 QNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSV 165
           Q     +S+E  + M   GF         I+  C + G++E GR                
Sbjct: 313 QEYRSDKSIEYLKRMRDSGFEPNEVTCISILGACFRSGDVETGR---------------- 356

Query: 166 FVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
                               R+F  +   +  +W AM+SG  + ++Y+  I+ FR MQ +
Sbjct: 357 --------------------RIFNTIPQPSVSAWNAMLSGYSNYEHYEEAINNFRQMQFQ 396

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
            +KP R TL+++L +CA LR L  GK IHG A       D H+ + L+ +Y EC E +  
Sbjct: 397 NLKPDRTTLSVILSSCARLRFLEGGKQIHGVAIRTETSEDSHIVSGLIAVYSEC-EKMEI 455

Query: 286 ARIIFERTKVK-DVVIWSSIIRGYSQSGDLSEAMKLFSRM-RLERIEPNSVTLLAILSSC 343
              IF+    + D+  W+S+I G  ++   ++A+ LF RM +   + PN  T   +L SC
Sbjct: 456 CECIFDDCINELDIACWNSMISGLRRNTLDTKALMLFRRMHQTSVLLPNETTYAIVLGSC 515

Query: 344 TRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWT 403
           +R   L HG   H  ++K+G   D  +  A+ +MY KCG I S+ Q F+ ++ ++ V W 
Sbjct: 516 SRLCSLVHGRQFHGQVVKSGYVSDSFVETAVTDMYCKCGEIESARQFFDTVSRKNTVIWN 575

Query: 404 TLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKE 463
            +I GY  +G G+EA+ L+ EM  +G +PD IT +++L+AC+H+GLV     + +++ ++
Sbjct: 576 EMIHGYAHNGRGDEAVDLYREMISAGEKPDGITFVSVLTACSHSGLVDTGLEILSSMQRD 635

Query: 464 KKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEM 523
             I   ++HY C VD LG++G++EDA  +    P K S+ +   L+S+CR++G + +A  
Sbjct: 636 HGIEPELDHYICIVDCLGRAGRLEDAETLAEATPYKSSSVLWEILLSSCRVYGDVSLARR 695

Query: 524 LAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
           +A +L+  +P+N+A Y LLS   S    W  A  +  +M    + K+ G S I
Sbjct: 696 VAEKLMHLDPQNSAAYVLLSNTYSSVRQWDDAAALQELMNKNRVHKTPGHSWI 748



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 111/388 (28%), Positives = 190/388 (48%), Gaps = 47/388 (12%)

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           N+ ++   K    E A ++FD MP RD +SWN++I+   + GF  ++L+++  M   GF+
Sbjct: 62  NAFLTFRCKVGDLEEACEVFDGMPERDVVSWNNMISVLVRKGFEEKALDVYGRMVGDGFL 121

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL-IAL 185
                LA ++S CS++ +  +G + H + +  G  + ++FV  ALL +Y+KC   +   +
Sbjct: 122 PSRFTLASVLSACSKVQDGVIGMRCHGVAVKTG-LDKNIFVGNALLSMYAKCGFMVDYGV 180

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLL------ 239
           RVFE +   NEVS+T +ISG          + +FR M  +GV+   V L+ +L       
Sbjct: 181 RVFESLSEPNEVSFTTVISGLARENKVLEAVHMFRLMCEKGVQVDCVCLSNILSISVPRE 240

Query: 240 ACAELRDLRN---GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK 296
            C  L ++     GK IH  A   GF  + HL+ +L+ +Y +  + ++ A +IF      
Sbjct: 241 GCDSLSEIYGNVLGKQIHSLALRRGFVGELHLNNSLLEIYAK-NKDMNGAELIFTEMPEV 299

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVH 356
           +VV W+ +I G+ Q     ++++   RMR    EPN VT ++IL +C R           
Sbjct: 300 NVVSWNIMIAGFGQEYRSDKSIEYLKRMRDSGFEPNEVTCISILGACFRS---------- 349

Query: 357 CYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGE 416
                                    G + +  +IFN +      +W  ++SGY  + + E
Sbjct: 350 -------------------------GDVETGRRIFNTIPQPSVSAWNAMLSGYSNYEHYE 384

Query: 417 EALQLFLEMQESGVEPDAITVLAILSAC 444
           EA+  F +MQ   ++PD  T+  ILS+C
Sbjct: 385 EAINNFRQMQFQNLKPDRTTLSVILSSC 412



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 105/399 (26%), Positives = 186/399 (46%), Gaps = 39/399 (9%)

Query: 158 DGSFELSVFVSTALLDLYS---------KCHHWLIALRVFEQMVIRNEVSWTAMISGCID 208
           DG +   +F   +L D+YS         K      A  VF+ M  R+ VSW  MIS  + 
Sbjct: 42  DGDYARKLFDEMSLRDVYSWNAFLTFRCKVGDLEEACEVFDGMPERDVVSWNNMISVLVR 101

Query: 209 SQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHL 268
               +  +D++  M  +G  P+R TL  VL AC++++D   G   HG A   G D +  +
Sbjct: 102 KGFEEKALDVYGRMVGDGFLPSRFTLASVLSACSKVQDGVIGMRCHGVAVKTGLDKNIFV 161

Query: 269 SAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER 328
             AL+ MY +C   +     +FE     + V ++++I G ++   + EA+ +F  M  + 
Sbjct: 162 GNALLSMYAKCGFMVDYGVRVFESLSEPNEVSFTTVISGLARENKVLEAVHMFRLMCEKG 221

Query: 329 IEPNSVTLLAILS-SCTRQSFLS--------HGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           ++ + V L  ILS S  R+   S         G  +H   ++ G   ++ + N+L+ +Y+
Sbjct: 222 VQVDCVCLSNILSISVPREGCDSLSEIYGNVLGKQIHSLALRRGFVGELHLNNSLLEIYA 281

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           K   +  +  IF EM   + VSW  +I+G+G     +++++    M++SG EP+ +T ++
Sbjct: 282 KNKDMNGAELIFTEMPEVNVVSWNIMIAGFGQEYRSDKSIEYLKRMRDSGFEPNEVTCIS 341

Query: 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP-- 497
           IL AC  +G V+    +FN + +      ++  +   +         E+A      M   
Sbjct: 342 ILGACFRSGDVETGRRIFNTIPQP-----SVSAWNAMLSGYSNYEHYEEAINNFRQMQFQ 396

Query: 498 -MKPSTRILSSLVSAC----------RIHG---RLEVAE 522
            +KP    LS ++S+C          +IHG   R E +E
Sbjct: 397 NLKPDRTTLSVILSSCARLRFLEGGKQIHGVAIRTETSE 435



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 160/349 (45%), Gaps = 17/349 (4%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           YE+ ++ ++Q +    L  +   L  ++ +CA  +  +  G Q+H  A+++ +  D  I 
Sbjct: 383 YEEAINNFRQ-MQFQNLKPDRTTLSVILSSCARLRFLEG-GKQIHGVAIRTETSEDSHIV 440

Query: 67  NSLISMYAKFSKPESAYQLFDE-MPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
           + LI++Y++  K E    +FD+ +   D   WNS+I+   +N    ++L +FR M+    
Sbjct: 441 SGLIAVYSECEKMEICECIFDDCINELDIACWNSMISGLRRNTLDTKALMLFRRMHQTSV 500

Query: 126 VLKAELLAGII-SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
           +L  E    I+   CS++  L  GRQ H  V+  G    S FV TA+ D+Y KC     A
Sbjct: 501 LLPNETTYAIVLGSCSRLCSLVHGRQFHGQVVKSGYVSDS-FVETAVTDMYCKCGEIESA 559

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
            + F+ +  +N V W  MI G   +   D  +DL+R M   G KP  +T   VL AC+  
Sbjct: 560 RQFFDTVSRKNTVIWNEMIHGYAHNGRGDEAVDLYREMISAGEKPDGITFVSVLTACSH- 618

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYC--EC---TEALHPARIIFERTKVK-DV 298
               +G    G         DH +   L H  C  +C      L  A  + E T  K   
Sbjct: 619 ----SGLVDTGLEILSSMQRDHGIEPELDHYICIVDCLGRAGRLEDAETLAEATPYKSSS 674

Query: 299 VIWSSIIRGYSQSGDLSEAMKLFSR-MRLERIEPNSVTLLAILSSCTRQ 346
           V+W  ++      GD+S A ++  + M L+     +  LL+   S  RQ
Sbjct: 675 VLWEILLSSCRVYGDVSLARRVAEKLMHLDPQNSAAYVLLSNTYSSVRQ 723


>gi|255562850|ref|XP_002522430.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538315|gb|EEF39922.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 556

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 161/454 (35%), Positives = 245/454 (53%), Gaps = 3/454 (0%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           + L L+ +     GL  +  IL   +K C  +  ++ +G  LH  ++KS       + ++
Sbjct: 97  EALTLFSKMWVVPGLRMDPFILSLALKICGLS-LNESYGESLHGYSVKSDFVDSVFVGSA 155

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           L+ MY KF K +   Q+F  MP R+ +SW +II  F   G+    L  F +M+    V  
Sbjct: 156 LVDMYMKFDKIQQGCQIFHAMPIRNVVSWTAIITGFVHAGYSKEGLVYFSQMWRSKVVCD 215

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
           +   A  +  C+ +G L+ GRQIH   +   S E S FV+  L  +Y+KC       R+F
Sbjct: 216 SYTFAIALKACANLGALDHGRQIHCQAL-KRSLEASSFVANTLATMYNKCGKLDYGSRLF 274

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
           E+M IRN VSWT +I+    S   +  +  F  MQ  GV P   T   V+  CA L    
Sbjct: 275 EKMTIRNVVSWTMIITTYTQSGQEENALRAFIRMQEIGVSPNDFTFAAVISGCANLGKTE 334

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
            G+ +HG+  C G      ++ +++ +Y +C + L  A ++F+    +DVV WS+II GY
Sbjct: 335 WGEQLHGHMLCLGLMTFLSVANSVITLYSKCGQ-LKSASMVFKELTRRDVVSWSTIIAGY 393

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
           SQ G   EA +  SRMR E  +PN +TL ++LS C   + L  G  +H + +  GL    
Sbjct: 394 SQGGCAEEAFEYLSRMRREGPKPNELTLASVLSVCGNMAILEQGKQLHAHALHVGLEQTA 453

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
            I +AL+NMYSKCGSI  + +IF+E    D VSWT +I+GY  HG  +EA+ LF ++   
Sbjct: 454 MIQSALINMYSKCGSIKEASKIFDEAENNDIVSWTAMINGYAEHGCRQEAIDLFEKIPRI 513

Query: 429 GVEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462
           G++PD +T + +L+AC+HAGLV      FN++ K
Sbjct: 514 GLKPDPVTFIGVLTACSHAGLVDLGFHYFNSMSK 547



 Score =  222 bits (565), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 133/427 (31%), Positives = 223/427 (52%), Gaps = 4/427 (0%)

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC-GF 125
           NS +    K    + A Q+FDEMP+RD ISW +II+ +        +L +F +M++  G 
Sbjct: 52  NSKLKALVKTGCLQDARQMFDEMPHRDEISWTTIISGYVNAIDTTEALTLFSKMWVVPGL 111

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
            +   +L+  + +C        G  +H    V   F  SVFV +AL+D+Y K        
Sbjct: 112 RMDPFILSLALKICGLSLNESYGESLHGYS-VKSDFVDSVFVGSALVDMYMKFDKIQQGC 170

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
           ++F  M IRN VSWTA+I+G + +     G+  F  M R  V     T  I L ACA L 
Sbjct: 171 QIFHAMPIRNVVSWTAIITGFVHAGYSKEGLVYFSQMWRSKVVCDSYTFAIALKACANLG 230

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
            L +G+ IH  A     +    ++  L  MY +C +  + +R +FE+  +++VV W+ II
Sbjct: 231 ALDHGRQIHCQALKRSLEASSFVANTLATMYNKCGKLDYGSR-LFEKMTIRNVVSWTMII 289

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
             Y+QSG    A++ F RM+   + PN  T  A++S C        G  +H +++  GL 
Sbjct: 290 TTYTQSGQEENALRAFIRMQEIGVSPNDFTFAAVISGCANLGKTEWGEQLHGHMLCLGLM 349

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
             +S+ N+++ +YSKCG + S+  +F E+  RD VSW+T+I+GY   G  EEA +    M
Sbjct: 350 TFLSVANSVITLYSKCGQLKSASMVFKELTRRDVVSWSTIIAGYSQGGCAEEAFEYLSRM 409

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
           +  G +P+ +T+ ++LS C +  ++++ + L  + +       A+   A  +++  K G 
Sbjct: 410 RREGPKPNELTLASVLSVCGNMAILEQGKQLHAHALHVGLEQTAMIQSA-LINMYSKCGS 468

Query: 486 IEDACKV 492
           I++A K+
Sbjct: 469 IKEASKI 475



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 2/129 (1%)

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE-SGV 430
           N+ +    K G +  + Q+F+EM  RD +SWTT+ISGY       EAL LF +M    G+
Sbjct: 52  NSKLKALVKTGCLQDARQMFDEMPHRDEISWTTIISGYVNAIDTTEALTLFSKMWVVPGL 111

Query: 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDAC 490
             D   +   L  C  +      E+L    +K   +       A  VD+  K  KI+  C
Sbjct: 112 RMDPFILSLALKICGLSLNESYGESLHGYSVKSDFVDSVFVGSA-LVDMYMKFDKIQQGC 170

Query: 491 KVVSTMPMK 499
           ++   MP++
Sbjct: 171 QIFHAMPIR 179


>gi|297735121|emb|CBI17483.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 168/528 (31%), Positives = 277/528 (52%), Gaps = 11/528 (2%)

Query: 59  SDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFR 118
           S  D   SN  +    K     +A ++FD+M  +D ISW ++I+ +        +L +F+
Sbjct: 52  SQTDLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFK 111

Query: 119 EMYL-CGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSK 177
            M +  G  +   +L+     C    ++  G  +H   +  G    SVFV +ALLD+Y+K
Sbjct: 112 NMRVESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVN-SVFVGSALLDMYTK 170

Query: 178 CHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIV 237
                   RVF +M +RN VSWTA+I+G + +      +  F  M R  V+    T  I 
Sbjct: 171 NGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIA 230

Query: 238 LLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKD 297
           L ACA+   L  G+ IH  A   GFD    ++  L  MY +C + L     +FE+  ++D
Sbjct: 231 LKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGK-LEYGLTLFEKMSMRD 289

Query: 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHC 357
           VV W++II    Q G    A++ F RMR   + PN  T  A++S C   + +  G  +H 
Sbjct: 290 VVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHA 349

Query: 358 YIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEE 417
            I+  GL   +S+ N++M MY+KCG +TSS  IF+EM  RD VSW+T+I+GY   G+  E
Sbjct: 350 LILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSE 409

Query: 418 ALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK--------EKKIALA 469
           A +L   M+  G +P    + ++LSAC +  +++  + L   V+         + +I+ +
Sbjct: 410 AFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMKYQISPS 469

Query: 470 IEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLI 529
            EHY C +DLL ++G++ DA  ++  MP      + S+L+ ACR+HG +E     A +++
Sbjct: 470 KEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERIL 529

Query: 530 EAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           + EP  A  +  L+ + +  G W  A ++ ++M++KG+ K  G+S I+
Sbjct: 530 QLEPNCAGTHITLANIYASKGKWREAADIRKLMKSKGVIKEPGWSWIK 577



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 125/415 (30%), Positives = 204/415 (49%), Gaps = 13/415 (3%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           + L L+K     SGL  +  IL    KAC    +  ++G  LH  A+K+G      + ++
Sbjct: 105 EALLLFKNMRVESGLRIDPFILSLAHKACGL-NSDVNYGELLHGYAVKTGLVNSVFVGSA 163

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           L+ MY K  K     ++F EMP R+ +SW +II    + G+   +L  F EM+       
Sbjct: 164 LLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYD 223

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
           +   A  +  C+  G L  GR+IHA  +  G F++S FV+  L  +Y+KC      L +F
Sbjct: 224 SYTFAIALKACADSGALNYGREIHAQAMKKG-FDVSSFVANTLATMYNKCGKLEYGLTLF 282

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
           E+M +R+ VSWT +I+  +     +  +  F  M+   V P   T   V+  CA L  + 
Sbjct: 283 EKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIE 342

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
            G+ +H      G      +  ++M MY +C + L  + +IF     +D+V WS+II GY
Sbjct: 343 WGEQLHALILHLGLAASLSVENSIMTMYAKCGQ-LTSSSVIFHEMTRRDIVSWSTIIAGY 401

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL---- 364
           SQ G +SEA +L S MR+E  +P    L ++LS+C   + L HG  +H Y++  GL    
Sbjct: 402 SQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTA 461

Query: 365 -NFDVSIGNA----LMNMYSKCGSITSSHQIFNEMA-ARDFVSWTTLISGYGFHG 413
             + +S        ++++  + G ++ +  +   M   RD V W+TL+     HG
Sbjct: 462 MKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHG 516


>gi|302756099|ref|XP_002961473.1| hypothetical protein SELMODRAFT_77426 [Selaginella moellendorffii]
 gi|300170132|gb|EFJ36733.1| hypothetical protein SELMODRAFT_77426 [Selaginella moellendorffii]
          Length = 643

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 171/546 (31%), Positives = 294/546 (53%), Gaps = 10/546 (1%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           + L L++ E+   G+  +   L S +KACA A   +  G  +H +A   G +++ +++ +
Sbjct: 96  EALGLFR-EIQSRGMAIDNVTLVSALKACAVAGDLEE-GRGIHASARSLGYESEIIVATA 153

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           L+SMY K    E A  +F  +  R+ +SWN+++  + QNG    ++ ++R M   G  +K
Sbjct: 154 LVSMYGKCGHLEEAKAVFATLVERNRVSWNAMLAAYAQNGHCEEAVRLYRLMCFEG--IK 211

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
            +    +  L    GE E G +IH  V+  G F  +  ++ AL+ +Y        A  VF
Sbjct: 212 PDATTFVSVLDGWKGEGEHGTRIHDQVLESG-FGSNTTLANALVSMYGSGGRVDDARYVF 270

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLF---RAMQREGVKPTRVTLTIVLLACAELR 245
           + +  +  VSW AM++    +  Y   +DLF     M+R  V+P  VT   +L+ACA   
Sbjct: 271 DGIAEKTVVSWNAMLTAYAQNGRYGKAVDLFWKMDEMRRALVEPNSVTFVNLLVACAATG 330

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
            L  G+ IH      G      +  AL++MY EC   L  A+ +F+    K++V W+ +I
Sbjct: 331 FLEAGRKIHAEVASLGLLSTLSVGGALINMYSECGN-LVLAKSVFDSVPHKNLVSWNVLI 389

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
             Y+  GD  EA+ +  +M LE ++P+  T +++L +C+    L+ G  +H  I  +GL 
Sbjct: 390 GSYAGDGDGKEALGVHQKMELEGLKPDKFTFISVLHACSASEALAEGKAIHALIAASGLE 449

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFHGYGEEALQLFLE 424
            D +IG AL+N+Y KCGS+  +  +F +M +R + V+W ++++     G  E+ +++   
Sbjct: 450 RDEAIGTALINLYGKCGSLEQARNVFLDMKSRRNLVTWNSMLAAACTKGGLEDCVEIIHM 509

Query: 425 MQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSG 484
           M   G+ PD +T L++L AC+H G +++   LF +   +  IA   +HY C VD+LG+ G
Sbjct: 510 MGLEGIMPDELTFLSVLFACSHGGSIQQGLDLFLSAGVDYGIATNTKHYVCVVDILGRVG 569

Query: 485 KIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSM 544
           ++E+A +V++ MP + +     +L+ ACRIH   E     A  +IE +P+NAA Y LLS 
Sbjct: 570 RLEEAQEVLNRMPFQANDVAWMTLLGACRIHRDFEQGRRAADYVIELDPQNAAPYALLST 629

Query: 545 VCSESG 550
           + S +G
Sbjct: 630 MFSVAG 635



 Score =  237 bits (604), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 160/544 (29%), Positives = 265/544 (48%), Gaps = 24/544 (4%)

Query: 21  SGLYSNTAIL----PSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKF 76
           SG    TAI      S+++ CA A+       Q      + G   D  + N L+  Y K 
Sbjct: 2   SGERDATAIAISSHASILRDCASARDLTA-AKQAQWEIARDGFGGDRYLGNLLVQAYGKC 60

Query: 77  SKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136
                A ++FD +  R+  SW  ++  +  NG    +L +FRE+   G  +    L   +
Sbjct: 61  GSVRDAREVFDRIQRRNIFSWTIMLGAYADNGHGREALGLFREIQSRGMAIDNVTLVSAL 120

Query: 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
             C+  G+LE GR IHA     G +E  + V+TAL+ +Y KC H   A  VF  +V RN 
Sbjct: 121 KACAVAGDLEEGRGIHASARSLG-YESEIIVATALVSMYGKCGHLEEAKAVFATLVERNR 179

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           VSW AM++    + + +  + L+R M  EG+KP   T   VL       +  +G  IH  
Sbjct: 180 VSWNAMLAAYAQNGHCEEAVRLYRLMCFEGIKPDATTFVSVLDGWKG--EGEHGTRIHDQ 237

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
               GF  +  L+ AL+ MY      +  AR +F+    K VV W++++  Y+Q+G   +
Sbjct: 238 VLESGFGSNTTLANALVSMYGSGGR-VDDARYVFDGIAEKTVVSWNAMLTAYAQNGRYGK 296

Query: 317 AMKLF---SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNA 373
           A+ LF     MR   +EPNSVT + +L +C    FL  G  +H  +   GL   +S+G A
Sbjct: 297 AVDLFWKMDEMRRALVEPNSVTFVNLLVACAATGFLEAGRKIHAEVASLGLLSTLSVGGA 356

Query: 374 LMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPD 433
           L+NMYS+CG++  +  +F+ +  ++ VSW  LI  Y   G G+EAL +  +M+  G++PD
Sbjct: 357 LINMYSECGNLVLAKSVFDSVPHKNLVSWNVLIGSYAGDGDGKEALGVHQKMELEGLKPD 416

Query: 434 AITVLAILSACNHAGLVKEAETLF-----NNVMKEKKIALAIEHYACYVDLLGKSGKIED 488
             T +++L AC+ +  + E + +      + + +++ I  A+      ++L GK G +E 
Sbjct: 417 KFTFISVLHACSASEALAEGKAIHALIAASGLERDEAIGTAL------INLYGKCGSLEQ 470

Query: 489 ACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL-IEAEPENAANYTLLSMVCS 547
           A  V   M  + +    +S+++A    G LE    + H + +E    +   +  +   CS
Sbjct: 471 ARNVFLDMKSRRNLVTWNSMLAAACTKGGLEDCVEIIHMMGLEGIMPDELTFLSVLFACS 530

Query: 548 ESGN 551
             G+
Sbjct: 531 HGGS 534



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 116/444 (26%), Positives = 216/444 (48%), Gaps = 14/444 (3%)

Query: 133 AGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV 192
           A I+  C+   +L   +Q    +  DG F    ++   L+  Y KC     A  VF+++ 
Sbjct: 16  ASILRDCASARDLTAAKQAQWEIARDG-FGGDRYLGNLLVQAYGKCGSVRDAREVFDRIQ 74

Query: 193 IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKA 252
            RN  SWT M+    D+ +    + LFR +Q  G+    VTL   L ACA   DL  G+ 
Sbjct: 75  RRNIFSWTIMLGAYADNGHGREALGLFREIQSRGMAIDNVTLVSALKACAVAGDLEEGRG 134

Query: 253 IHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSG 312
           IH  A   G++ +  ++ AL+ MY +C   L  A+ +F     ++ V W++++  Y+Q+G
Sbjct: 135 IHASARSLGYESEIIVATALVSMYGKCGH-LEEAKAVFATLVERNRVSWNAMLAAYAQNG 193

Query: 313 DLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN 372
              EA++L+  M  E I+P++ T +++L     +    HG  +H  ++++G   + ++ N
Sbjct: 194 HCEEAVRLYRLMCFEGIKPDATTFVSVLDGWKGEG--EHGTRIHDQVLESGFGSNTTLAN 251

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL---EMQESG 429
           AL++MY   G +  +  +F+ +A +  VSW  +++ Y  +G   +A+ LF    EM+ + 
Sbjct: 252 ALVSMYGSGGRVDDARYVFDGIAEKTVVSWNAMLTAYAQNGRYGKAVDLFWKMDEMRRAL 311

Query: 430 VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
           VEP+++T + +L AC   G ++    +   V     ++  +      +++  + G +  A
Sbjct: 312 VEPNSVTFVNLLVACAATGFLEAGRKIHAEVASLGLLS-TLSVGGALINMYSECGNLVLA 370

Query: 490 CKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA-HQLIEAEPENAANYTLLSMV--C 546
             V  ++P K    ++S  V      G  +  E L  HQ +E E      +T +S++  C
Sbjct: 371 KSVFDSVPHK---NLVSWNVLIGSYAGDGDGKEALGVHQKMELEGLKPDKFTFISVLHAC 427

Query: 547 SESGNWLGAEEVWRVMRAKGLSKS 570
           S S      + +  ++ A GL + 
Sbjct: 428 SASEALAEGKAIHALIAASGLERD 451


>gi|296085749|emb|CBI29560.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  288 bits (738), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 177/527 (33%), Positives = 280/527 (53%), Gaps = 34/527 (6%)

Query: 54  ALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRS 113
           A +  SD +    N++I+ YAK S+P  A+QLFD++P  D +S+N++I+ +   G    +
Sbjct: 65  AFQDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPA 124

Query: 114 LEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLD 173
           L +F  M   G  +    L+ +I+ C    ++ L  Q+H++ +  G F+  V V+ ALL 
Sbjct: 125 LGLFSGMREMGLDMDGFTLSAVITACCD--DVGLIGQLHSVAVSSG-FDSYVSVNNALLT 181

Query: 174 LYSKCHHWLIALRVFEQMV-IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRV 232
            Y K      A RVF  M  IR+EVSW +MI      Q     + LF+ M R G+     
Sbjct: 182 YYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMF 241

Query: 233 TLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFER 292
           TL  VL A   L DL  G   HG     GF  + H+ + L+ +Y +C   +   R +FE 
Sbjct: 242 TLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEE 301

Query: 293 TKVKDVVIWSSIIRGYSQSGD-LSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSH 351
               D+V+W++++ GYSQ+ + L +A++ F +M+     PN  + + ++S+C+  S  S 
Sbjct: 302 ITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQ 361

Query: 352 GLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGF 411
           G  +H   +K                           ++F+ MA  + VS  ++I+GY  
Sbjct: 362 GKQIHSLALK---------------------------RLFDRMAEHNTVSLNSMIAGYAQ 394

Query: 412 HGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK-KIALAI 470
           HG   E+L LF  M E  + P +IT +++LSAC H G V+E    FN +MKEK  I    
Sbjct: 395 HGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFN-MMKEKFNIEPEA 453

Query: 471 EHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE 530
           EHY+C +DLLG++GK+ +A  +++ MP  P +   +SL+ ACR HG +E+A   A+Q+++
Sbjct: 454 EHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQ 513

Query: 531 AEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            EP NAA Y +LS + + +G W     V + MR +G+ K  G S IE
Sbjct: 514 LEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIE 560



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 112/422 (26%), Positives = 194/422 (45%), Gaps = 46/422 (10%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGL--QLHCTALKSGSDADPVISNSLISMYAKFSKP 79
           GL  +   L +VI AC         GL  QLH  A+ SG D+   ++N+L++ Y K    
Sbjct: 135 GLDMDGFTLSAVITACC-----DDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDL 189

Query: 80  ESAYQLFDEM-PYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISL 138
           + A ++F  M   RD +SWNS+I  + Q+    ++L +F+EM   G  +    LA +++ 
Sbjct: 190 DDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTA 249

Query: 139 CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR-VFEQMVIRNEV 197
            + + +L  G Q H  +I  G F  +  V + L+DLYSKC   +   R VFE++   + V
Sbjct: 250 FTCLEDLSGGLQFHGQLIKTG-FHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLV 308

Query: 198 SWTAMISGCIDSQNY-DTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
            W  M+SG   ++ + +  ++ FR MQ  G +P   +   V+ AC+ L     GK IH  
Sbjct: 309 LWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSL 368

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
           A                             + +F+R    + V  +S+I GY+Q G   E
Sbjct: 369 AL----------------------------KRLFDRMAEHNTVSLNSMIAGYAQHGIEME 400

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG--NAL 374
           ++ LF  M   +I P S+T +++LS+C     +  G   +  +MK   N +      + +
Sbjct: 401 SLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWN-YFNMMKEKFNIEPEAEHYSCM 459

Query: 375 MNMYSKCGSITSSHQIFNEMAARD-FVSWTTLISGYGFHGYGE---EALQLFLEMQESGV 430
           +++  + G ++ +  +   M      + W +L+     HG  E   +A    L+++ S  
Sbjct: 460 IDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNA 519

Query: 431 EP 432
            P
Sbjct: 520 AP 521



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 44/194 (22%)

Query: 339 ILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSIT------------- 385
           +L +C  +  LS G  +H   +K+ +       N  + +YSKCG +              
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPN 73

Query: 386 ------------------SSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
                              +HQ+F+++   D VS+ TLIS Y   G    AL LF  M+E
Sbjct: 74  VFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMRE 133

Query: 428 SGVEPDAITVLAILSA-CNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLL----GK 482
            G++ D  T+ A+++A C+  GL+ +  ++         ++   + Y    + L    GK
Sbjct: 134 MGLDMDGFTLSAVITACCDDVGLIGQLHSV--------AVSSGFDSYVSVNNALLTYYGK 185

Query: 483 SGKIEDACKVVSTM 496
           +G ++DA +V   M
Sbjct: 186 NGDLDDAKRVFYGM 199


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  288 bits (738), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 162/470 (34%), Positives = 261/470 (55%), Gaps = 4/470 (0%)

Query: 112 RSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTAL 171
           R  E   EM + G  +       +++ C     L  G+++HA +I    +  + ++ T L
Sbjct: 35  RLQEALLEMAMLGPEMGFHGYDALLNACLDKRALRDGQRVHAHMI-KTRYLPATYLRTRL 93

Query: 172 LDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTR 231
           L  Y KC     A +V ++M  +N VSWTAMIS    + +    + +F  M R   KP  
Sbjct: 94  LIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNE 153

Query: 232 VTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFE 291
            T   VL +C     L  GK IHG      +D    + ++L+ MY +  + +  AR IFE
Sbjct: 154 FTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQ-IKEAREIFE 212

Query: 292 RTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSH 351
               +DVV  ++II GY+Q G   EA+++F R+  E + PN VT  ++L++ +  + L H
Sbjct: 213 CLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDH 272

Query: 352 GLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGF 411
           G   HC++++  L F   + N+L++MYSKCG+++ + ++F+ M  R  +SW  ++ GY  
Sbjct: 273 GKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSK 332

Query: 412 HGYGEEALQLFLEMQ-ESGVEPDAITVLAILSACNHAGLVKEAETLFNN-VMKEKKIALA 469
           HG G E L+LF  M+ E  V+PDA+T+LA+LS C+H  +      +F+  V  E      
Sbjct: 333 HGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPG 392

Query: 470 IEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLI 529
            EHY C VD+LG++G+I++A + +  MP KP+  +L SL+ ACR+H  +++ E +  +LI
Sbjct: 393 TEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLI 452

Query: 530 EAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIENE 579
           E EPENA NY +LS + + +G W     V  +M  K ++K  G S I++E
Sbjct: 453 EIEPENAGNYVILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSWIQHE 502



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/354 (28%), Positives = 177/354 (50%), Gaps = 5/354 (1%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G ++H   +K+       +   L+  Y K    E A ++ DEMP ++ +SW ++I+ ++Q
Sbjct: 71  GQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQ 130

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
            G    +L +F EM            A +++ C +   L LG+QIH L IV  +++  +F
Sbjct: 131 TGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGL-IVKWNYDSHIF 189

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           V ++LLD+Y+K      A  +FE +  R+ VS TA+I+G       +  +++F  +  EG
Sbjct: 190 VGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEG 249

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           + P  VT   +L A + L  L +GK  H +       F   L  +L+ MY +C   L  A
Sbjct: 250 MSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGN-LSYA 308

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE-RIEPNSVTLLAILSSCTR 345
           R +F+    +  + W++++ GYS+ G   E ++LF  MR E R++P++VTLLA+LS C+ 
Sbjct: 309 RRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSH 368

Query: 346 QSFLSHGLGVHCYIMKA--GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR 397
                 GL +   ++    G          +++M  + G I  + +    M ++
Sbjct: 369 GRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSK 422



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 122/251 (48%), Gaps = 10/251 (3%)

Query: 1   MVSKHFYEQTLHLYKQ-----ELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTAL 55
           M+S+  Y QT H  +      E+  S    N     +V+ +C  A +    G Q+H   +
Sbjct: 124 MISR--YSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRA-SGLGLGKQIHGLIV 180

Query: 56  KSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLE 115
           K   D+   + +SL+ MYAK  + + A ++F+ +P RD +S  +II  + Q G    +LE
Sbjct: 181 KWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALE 240

Query: 116 MFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLY 175
           MF  ++  G        A +++  S +  L+ G+Q H  V+          +  +L+D+Y
Sbjct: 241 MFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRR-ELPFYAVLQNSLIDMY 299

Query: 176 SKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG-VKPTRVTL 234
           SKC +   A R+F+ M  R  +SW AM+ G          ++LFR M+ E  VKP  VTL
Sbjct: 300 SKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTL 359

Query: 235 TIVLLACAELR 245
             VL  C+  R
Sbjct: 360 LAVLSGCSHGR 370


>gi|15218851|ref|NP_171853.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180299|sp|Q9LR69.1|PPR8_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g03540
 gi|9280645|gb|AAF86514.1|AC002560_7 F21B7.16 [Arabidopsis thaliana]
 gi|91805735|gb|ABE65596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189463|gb|AEE27584.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 609

 Score =  288 bits (737), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 173/562 (30%), Positives = 301/562 (53%), Gaps = 10/562 (1%)

Query: 19  HPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSK 78
           H S + +   +  S+++ C    +  H G+Q H   +KSG + D  + NSL+S+Y K   
Sbjct: 53  HSSEIPATPKLYASLLQTCNKVFSFIH-GIQFHAHVVKSGLETDRNVGNSLLSLYFKLGP 111

Query: 79  P-ESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS 137
                 ++FD    +D ISW S+++ +     +V++LE+F EM   G       L+  + 
Sbjct: 112 GMRETRRVFDGRFVKDAISWTSMMSGYVTGKEHVKALEVFVEMVSFGLDANEFTLSSAVK 171

Query: 138 LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197
            CS++GE+ LGR  H +VI  G FE + F+S+ L  LY      + A RVF++M   + +
Sbjct: 172 ACSELGEVRLGRCFHGVVITHG-FEWNHFISSTLAYLYGVNREPVDARRVFDEMPEPDVI 230

Query: 198 SWTAMISGCIDSQNYDTGIDLFRAMQR-EGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
            WTA++S    +  Y+  + LF AM R +G+ P   T   VL AC  LR L+ GK IHG 
Sbjct: 231 CWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGK 290

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
               G   +  + ++L+ MY +C  ++  AR +F     K+ V WS+++ GY Q+G+  +
Sbjct: 291 LITNGIGSNVVVESSLLDMYGKCG-SVREARQVFNGMSKKNSVSWSALLGGYCQNGEHEK 349

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
           A+++F  M     E +      +L +C   + +  G  +H   ++ G   +V + +AL++
Sbjct: 350 AIEIFREME----EKDLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIVESALID 405

Query: 377 MYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAIT 436
           +Y K G I S+ +++++M+ R+ ++W  ++S    +G GEEA+  F +M + G++PD I+
Sbjct: 406 LYGKSGCIDSASRVYSKMSIRNMITWNAMLSALAQNGRGEEAVSFFNDMVKKGIKPDYIS 465

Query: 437 VLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
            +AIL+AC H G+V E    F  + K   I    EHY+C +DLLG++G  E+A  ++   
Sbjct: 466 FIAILTACGHTGMVDEGRNYFVLMAKSYGIKPGTEHYSCMIDLLGRAGLFEEAENLLERA 525

Query: 497 PMKPSTRILSSLVSACRIHGRL-EVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGA 555
             +    +   L+  C  +     VAE +A +++E EP+   +Y LLS +    G    A
Sbjct: 526 ECRNDASLWGVLLGPCAANADASRVAERIAKRMMELEPKYHMSYVLLSNMYKAIGRHGDA 585

Query: 556 EEVWRVMRAKGLSKSYGFSRIE 577
             + ++M  +G++K+ G S I+
Sbjct: 586 LNIRKLMVRRGVAKTVGQSWID 607



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 104/203 (51%), Gaps = 7/203 (3%)

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
           G L+EA+++ +      I        ++L +C +     HG+  H +++K+GL  D ++G
Sbjct: 40  GQLTEAIRILNSTHSSEIPATPKLYASLLQTCNKVFSFIHGIQFHAHVVKSGLETDRNVG 99

Query: 372 NALMNMYSKCG-SITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV 430
           N+L+++Y K G  +  + ++F+    +D +SWT+++SGY       +AL++F+EM   G+
Sbjct: 100 NSLLSLYFKLGPGMRETRRVFDGRFVKDAISWTSMMSGYVTGKEHVKALEVFVEMVSFGL 159

Query: 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIED 488
           + +  T+ + + AC+  G V+        V+          H+  +    L G + +  D
Sbjct: 160 DANEFTLSSAVKACSELGEVRLGRCFHGVVITH---GFEWNHFISSTLAYLYGVNREPVD 216

Query: 489 ACKVVSTMPMKPSTRILSSLVSA 511
           A +V   MP +P     ++++SA
Sbjct: 217 ARRVFDEMP-EPDVICWTAVLSA 238


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  288 bits (737), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 177/538 (32%), Positives = 277/538 (51%), Gaps = 72/538 (13%)

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMF--REMY--- 121
           N+++S YA+    + A ++FD MP ++ +SWN++++ + QN     +  +F  RE +   
Sbjct: 156 NTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALV 215

Query: 122 -----LCGFVLKAELLAG-----------------IISLCSQIGELELGRQIHALVIVDG 159
                L GFV K +++                   II+  +Q GE++  RQ+      D 
Sbjct: 216 SWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQL-----FDE 270

Query: 160 SFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLF 219
           S    VF  TA++  Y +      A  +F++M  RNEVSW AM++G +  +  +   +LF
Sbjct: 271 SPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKELF 330

Query: 220 RAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCEC 279
             M      P R   T   +             I GYA C                    
Sbjct: 331 DVM------PCRNVSTWNTM-------------ITGYAQCG------------------- 352

Query: 280 TEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAI 339
              +  A+ +F++   +D V W+++I GYSQSG   EA++LF  M  E    N  +  + 
Sbjct: 353 --KISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSA 410

Query: 340 LSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDF 399
           LS+C     L  G  +H  ++K G      +GNAL+ MY KCGSI  ++ +F EMA +D 
Sbjct: 411 LSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDI 470

Query: 400 VSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNN 459
           VSW T+I+GY  HG+GEEAL+ F  M+  G++PD  T++A+LSAC+H GLV +    F+ 
Sbjct: 471 VSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHT 530

Query: 460 VMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLE 519
           + ++  +    +HYAC VDLLG++G +E+A  ++  MP +P   I  +L+ A R+HG  E
Sbjct: 531 MTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTE 590

Query: 520 VAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +AE  A ++   EPEN+  Y LLS + + SG W    ++   MR KG+ K  G+S IE
Sbjct: 591 LAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIE 648



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 109/405 (26%), Positives = 185/405 (45%), Gaps = 28/405 (6%)

Query: 38  AYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISW 97
           AY Q  +   L+  C    S  +   V  N L+  + K  K   A Q FD M  RD +SW
Sbjct: 192 AYVQNSK---LEEACVLFGSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSW 248

Query: 98  NSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS--LCSQIGEL--------EL 147
           N+II  + QNG    + ++F E  +        +++G I   +  +  EL        E+
Sbjct: 249 NTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPERNEV 308

Query: 148 GRQIHALVIVDGS--------FEL----SVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
                    V G         F++    +V     ++  Y++C     A  +F++M  R+
Sbjct: 309 SWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRD 368

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
            VSW AMI+G   S +    + LF  M+REG +  R + +  L  CA++  L  GK +HG
Sbjct: 369 PVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHG 428

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
                G++    +  AL+ MYC+C  ++  A  +F+    KD+V W+++I GYS+ G   
Sbjct: 429 RLVKGGYETGCFVGNALLLMYCKCG-SIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGE 487

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG-VHCYIMKAGLNFDVSIGNAL 374
           EA++ F  M+ E ++P+  T++A+LS+C+    +  G    H      G+  +      +
Sbjct: 488 EALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACM 547

Query: 375 MNMYSKCGSITSSHQIFNEMA-ARDFVSWTTLISGYGFHGYGEEA 418
           +++  + G +  +H +   M    D   W TL+     HG  E A
Sbjct: 548 VDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELA 592



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 121/507 (23%), Positives = 222/507 (43%), Gaps = 52/507 (10%)

Query: 56  KSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLE 115
           KSG D+D    N  IS Y +  +   A ++F  MP   ++S+N++I+ + +NG +  +  
Sbjct: 53  KSG-DSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARM 111

Query: 116 MFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLY 175
           +F EM     V    ++ G +   +     EL  ++    +   +  LS +     +D  
Sbjct: 112 LFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCVD-- 169

Query: 176 SKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLT 235
                   A RVF++M  +N+VSW A++S  + +   +    LF          +R    
Sbjct: 170 -------DARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLF---------GSRENWA 213

Query: 236 IVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS-AALMHMYCECTEALHPARIIFERTK 294
           +V   C     ++  K +    +         +S   ++  Y +  E +  AR +F+ + 
Sbjct: 214 LVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGE-IDEARQLFDESP 272

Query: 295 VKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG 354
           V DV  W++++ GY Q+  + EA +LF RM     E N V+  A+L+   +        G
Sbjct: 273 VHDVFTWTAMVSGYIQNRMVEEARELFDRM----PERNEVSWNAMLAGYVQ--------G 320

Query: 355 VHCYIMKAGLNF----DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYG 410
               + K   +     +VS  N ++  Y++CG I+ +  +F++M  RD VSW  +I+GY 
Sbjct: 321 ERVEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYS 380

Query: 411 FHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAI 470
             G+  EAL+LF+ M+  G   +  +  + LS C     ++  + L   ++K        
Sbjct: 381 QSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVK------GG 434

Query: 471 EHYACYVD-----LLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
               C+V      +  K G IE+A  +   M  K      +++++    HG  E A    
Sbjct: 435 YETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVS-WNTMIAGYSRHGFGEEALRFF 493

Query: 526 HQLIEA--EPENAANYTLLSMVCSESG 550
             +     +P++A    +LS  CS +G
Sbjct: 494 ESMKREGLKPDDATMVAVLS-ACSHTG 519



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 6/149 (4%)

Query: 7   YEQTLHLYKQE-----LHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           Y Q+ H Y+       +   G   N +   S +  CA     +  G QLH   +K G + 
Sbjct: 379 YSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALE-LGKQLHGRLVKGGYET 437

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
              + N+L+ MY K    E A  LF EM  +D +SWN++I  ++++GF   +L  F  M 
Sbjct: 438 GCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMK 497

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQ 150
             G       +  ++S CS  G ++ GRQ
Sbjct: 498 REGLKPDDATMVAVLSACSHTGLVDKGRQ 526


>gi|9279602|dbj|BAB01060.1| unnamed protein product [Arabidopsis thaliana]
          Length = 598

 Score =  288 bits (737), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 168/529 (31%), Positives = 282/529 (53%), Gaps = 3/529 (0%)

Query: 51  HCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFY 110
           HC A+K GS +D  +SN ++  Y KF     A  LFDEMP RD++SWN++I+ +T  G  
Sbjct: 23  HCYAIKCGSISDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGKL 82

Query: 111 VRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTA 170
             +  +F  M   G  +     + ++   + +   +LG Q+H LVI  G +E +V+V ++
Sbjct: 83  EDAWCLFTCMKRSGSDVDGYSFSRLLKGIASVKRFDLGEQVHGLVI-KGGYECNVYVGSS 141

Query: 171 LLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQ-REGVKP 229
           L+D+Y+KC     A   F+++   N VSW A+I+G +  ++  T   L   M+ +  V  
Sbjct: 142 LVDMYAKCERVEDAFEAFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTM 201

Query: 230 TRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARII 289
              T   +L    +       K +H      G   +  +  A++  Y +C       R+ 
Sbjct: 202 DAGTFAPLLTLLDDPMFCNLLKQVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRVF 261

Query: 290 FERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFL 349
                 KD++ W+S+I G++Q G   +A+K FS +R   I+ +     A+L SC+  + L
Sbjct: 262 DGLGGSKDLISWNSMIAGFAQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCSDLATL 321

Query: 350 SHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISG 408
             G  +H    K+G   +  + ++L+ MYSKCG I S+ + F +++++   V+W  +I G
Sbjct: 322 QLGQQIHALATKSGFVSNEFVISSLIVMYSKCGIIESARKCFQQISSKHSTVAWNAMILG 381

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468
           Y  HG G+ +L LF +M    V+ D +T  AIL+AC+H GL++E   L N +    KI  
Sbjct: 382 YAQHGLGQVSLDLFSQMCNQNVKLDHVTFTAILTACSHTGLIQEGLELLNLMEPVYKIQP 441

Query: 469 AIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
            +EHYA  VDLLG++G +  A +++ +MP+ P   +L + +  CR  G +E+A  +A+ L
Sbjct: 442 RMEHYAAAVDLLGRAGLVNKAKELIESMPLNPDPMVLKTFLGVCRACGEIEMATQVANHL 501

Query: 529 IEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +E EPE+   Y  LS + S+   W     V ++M+ +G+ K  G+S IE
Sbjct: 502 LEIEPEDHFTYVSLSHMYSDLKKWEEKASVKKMMKERGVKKVPGWSWIE 550



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 158/315 (50%), Gaps = 13/315 (4%)

Query: 46  FGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT 105
            G Q+H   +K G + +  + +SL+ MYAK  + E A++ F E+   +++SWN++I  F 
Sbjct: 119 LGEQVHGLVIKGGYECNVYVGSSLVDMYAKCERVEDAFEAFKEISEPNSVSWNALIAGFV 178

Query: 106 Q-----NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGS 160
           Q       F++  L   +        + A   A +++L        L +Q+HA V+  G 
Sbjct: 179 QVRDIKTAFWLLGLMEMK----AAVTMDAGTFAPLLTLLDDPMFCNLLKQVHAKVLKLG- 233

Query: 161 FELSVFVSTALLDLYSKCHHWLIALRVFEQM-VIRNEVSWTAMISGCIDSQNYDTGIDLF 219
            +  + +  A++  Y+ C     A RVF+ +   ++ +SW +MI+G       +  +  F
Sbjct: 234 LQHEITICNAMISSYADCGSVSDAKRVFDGLGGSKDLISWNSMIAGFAQKGLSEDAVKFF 293

Query: 220 RAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCEC 279
             ++   +K      + +L +C++L  L+ G+ IH  A   GF  +  + ++L+ MY +C
Sbjct: 294 SYLRSSEIKVDDYAFSALLRSCSDLATLQLGQQIHALATKSGFVSNEFVISSLIVMYSKC 353

Query: 280 TEALHPARIIFERTKVK-DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLA 338
              +  AR  F++   K   V W+++I GY+Q G    ++ LFS+M  + ++ + VT  A
Sbjct: 354 G-IIESARKCFQQISSKHSTVAWNAMILGYAQHGLGQVSLDLFSQMCNQNVKLDHVTFTA 412

Query: 339 ILSSCTRQSFLSHGL 353
           IL++C+    +  GL
Sbjct: 413 ILTACSHTGLIQEGL 427


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  288 bits (737), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 177/578 (30%), Positives = 303/578 (52%), Gaps = 9/578 (1%)

Query: 6   FYEQTLHLYKQELHPSG---LYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDAD 62
           F E++  L  + +  +G      + A L +V+  CA  +     G  +H  A+K   D +
Sbjct: 268 FSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCA-REREIGLGKGVHGWAVKLRLDKE 326

Query: 63  PVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL 122
            V++N+L+ MY+K     +A  +F     ++ +SWN+++  F+  G    + ++ R+M  
Sbjct: 327 LVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLA 386

Query: 123 CGFVLKAE--LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
            G  +KA+   +   + +C     L   +++H   +    F  +  V+ A +  Y+KC  
Sbjct: 387 GGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQ-EFVYNELVANAFVASYAKCGS 445

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
              A RVF  +  +   SW A+I G   S +    +D    M+  G+ P   T+  +L A
Sbjct: 446 LSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSA 505

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
           C++L+ LR GK +HG+      + D  +  +++ +Y  C E L   + +F+  + K +V 
Sbjct: 506 CSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGE-LCTVQALFDAMEDKSLVS 564

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           W+++I GY Q+G    A+ +F +M L  I+   ++++ +  +C+    L  G   H Y +
Sbjct: 565 WNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYAL 624

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
           K  L  D  I  +L++MY+K GSIT S ++FN +  +   SW  +I GYG HG  +EA++
Sbjct: 625 KHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIK 684

Query: 421 LFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLL 480
           LF EMQ +G  PD +T L +L+ACNH+GL+ E     + +     +   ++HYAC +D+L
Sbjct: 685 LFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDML 744

Query: 481 GKSGKIEDACKVVS-TMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANY 539
           G++G+++ A +VV+  M  +    I  SL+S+CRIH  LE+ E +A +L E EPE   NY
Sbjct: 745 GRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENY 804

Query: 540 TLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            LLS + +  G W    +V + M    L K  G S IE
Sbjct: 805 VLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIE 842



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 152/558 (27%), Positives = 276/558 (49%), Gaps = 24/558 (4%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
            Y++ L  + + +  + L  +    P VIKACA   +    GL +H   +K+G   D  +
Sbjct: 166 LYDEVLETFIEMISTTDLLPDHFTYPCVIKACA-GMSDVGIGLAVHGLVVKTGLVEDVFV 224

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSL----EMFREMY 121
            N+L+S Y        A QLFD MP R+ +SWNS+I  F+ NGF   S     EM  E  
Sbjct: 225 GNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENG 284

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
              F+     L  ++ +C++  E+ LG+ +H    V    +  + ++ AL+D+YSKC   
Sbjct: 285 DGAFMPDVATLVTVLPVCAREREIGLGKGVHGWA-VKLRLDKELVLNNALMDMYSKCGCI 343

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM--QREGVKPTRVTLTIVLL 239
             A  +F+    +N VSW  M+ G     +     D+ R M    E VK   VT+   + 
Sbjct: 344 TNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVP 403

Query: 240 ACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVV 299
            C     L + K +H Y+    F ++  ++ A +  Y +C  +L  A+ +F   + K V 
Sbjct: 404 VCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCG-SLSYAQRVFHGIRSKTVN 462

Query: 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
            W+++I G++QS D   ++    +M++  + P+S T+ ++LS+C++   L  G  VH +I
Sbjct: 463 SWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFI 522

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEAL 419
           ++  L  D+ +  +++++Y  CG + +   +F+ M  +  VSW T+I+GY  +G+ + AL
Sbjct: 523 IRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRAL 582

Query: 420 QLFLEMQESGVEPDAITVLAILSACN-----HAGLVKEAETLFNNVMKEKKIALAIEHYA 474
            +F +M   G++   I+++ +  AC+       G    A  L + +  +  IA ++    
Sbjct: 583 GVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSL---- 638

Query: 475 CYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPE 534
             +D+  K+G I  + KV + +  K ST   ++++    IHG  + A  L  ++ +    
Sbjct: 639 --IDMYAKNGSITQSSKVFNGLKEK-STASWNAMIMGYGIHGLAKEAIKLFEEM-QRTGH 694

Query: 535 NAANYTLLSMV--CSESG 550
           N  + T L ++  C+ SG
Sbjct: 695 NPDDLTFLGVLTACNHSG 712



 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 120/391 (30%), Positives = 201/391 (51%), Gaps = 9/391 (2%)

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D V+   +I+MYA    P+ +  +FD +  ++   WN++I+ +++N  Y   LE F EM 
Sbjct: 119 DDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMI 178

Query: 122 LCGFVLKAELL-AGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
               +L        +I  C+ + ++ +G  +H LV+  G  E  VFV  AL+  Y     
Sbjct: 179 STTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVE-DVFVGNALVSFYGTHGF 237

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE----GVKPTRVTLTI 236
              AL++F+ M  RN VSW +MI    D+   +    L   M  E       P   TL  
Sbjct: 238 VTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVT 297

Query: 237 VLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK 296
           VL  CA  R++  GK +HG+A     D +  L+ ALM MY +C   +  A++IF+    K
Sbjct: 298 VLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCG-CITNAQMIFKMNNNK 356

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRL--ERIEPNSVTLLAILSSCTRQSFLSHGLG 354
           +VV W++++ G+S  GD      +  +M    E ++ + VT+L  +  C  +SFL     
Sbjct: 357 NVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKE 416

Query: 355 VHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGY 414
           +HCY +K    ++  + NA +  Y+KCGS++ + ++F+ + ++   SW  LI G+     
Sbjct: 417 LHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSND 476

Query: 415 GEEALQLFLEMQESGVEPDAITVLAILSACN 445
              +L   L+M+ SG+ PD+ TV ++LSAC+
Sbjct: 477 PRLSLDAHLQMKISGLLPDSFTVCSLLSACS 507



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 165/342 (48%), Gaps = 14/342 (4%)

Query: 125 FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
           F+L  E L  ++    +  ++E+GR+IH LV           + T ++ +Y+ C     +
Sbjct: 80  FLLVREALGLLLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDS 139

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM-QREGVKPTRVTLTIVLLACAE 243
             VF+ +  +N   W A+IS    ++ YD  ++ F  M     + P   T   V+ ACA 
Sbjct: 140 RFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAG 199

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCE---CTEALHPARIIFERTKVKDVVI 300
           + D+  G A+HG     G   D  +  AL+  Y      T+AL    I+ ER    ++V 
Sbjct: 200 MSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPER----NLVS 255

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIE----PNSVTLLAILSSCTRQSFLSHGLGVH 356
           W+S+IR +S +G   E+  L   M  E  +    P+  TL+ +L  C R+  +  G GVH
Sbjct: 256 WNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVH 315

Query: 357 CYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGE 416
            + +K  L+ ++ + NALM+MYSKCG IT++  IF     ++ VSW T++ G+   G   
Sbjct: 316 GWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTH 375

Query: 417 EALQLFLEMQESG--VEPDAITVLAILSACNHAGLVKEAETL 456
               +  +M   G  V+ D +T+L  +  C H   +   + L
Sbjct: 376 GTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKEL 417


>gi|125527494|gb|EAY75608.1| hypothetical protein OsI_03512 [Oryza sativa Indica Group]
          Length = 608

 Score =  288 bits (737), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 163/544 (29%), Positives = 287/544 (52%), Gaps = 36/544 (6%)

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
           +  L  + +  S   +A  LFD +P        ++I+  ++   +   L+ F  ++  G 
Sbjct: 22  TRPLHDLLSDASTSRAARHLFDAVPRPTPALCGTLISALSRLCSHQELLDAFSSLHRRGS 81

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
            +    +  ++  C+ +     G+Q+H   IV G     +FV TAL+D Y+K      A+
Sbjct: 82  DVPPGCVPLVVKSCAILAASRQGKQVHCHAIVRGLLG-DIFVQTALVDFYAKNGDMDCAV 140

Query: 186 RVFEQMVIRNEV-------------------------------SWTAMISGCIDSQNYDT 214
           +VF++M +++ +                               SW +MI+       Y  
Sbjct: 141 KVFDEMPVKDPIPMNCLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQE 200

Query: 215 GIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHL-SAALM 273
            + LFR M  EG +P  +T+  +   CA+  DL  GK     +     D  + +   ALM
Sbjct: 201 ALRLFRRMLSEGARPNAITIATMFSICAKTGDLETGK--WARSLIAEQDLQNMIVHTALM 258

Query: 274 HMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNS 333
            MY +C +A+  AR  F+R + +DVV WS++I GY+Q+G   E+++LF RM+    +PN 
Sbjct: 259 EMYVKC-QAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNE 317

Query: 334 VTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNE 393
           VTL+ +LS+C +      G  +  ++    L     +G+AL++MY+KCG +  +  +FN 
Sbjct: 318 VTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNR 377

Query: 394 MAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEA 453
           M  +  ++W +++ G   +G+ ++A+ L+ EM E  V+P+ IT +A+L+AC HAGLV + 
Sbjct: 378 MEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQG 437

Query: 454 ETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACR 513
            + F  +     ++  +EH AC VDLL KSG++ +A K +  M ++P+  I S+L+SACR
Sbjct: 438 MSFFKEMKTIHHVSPQVEHCACIVDLLCKSGRLREAYKFICDMEVEPNAVIWSTLLSACR 497

Query: 514 IHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGF 573
            H  +E+A++ A +L+  EP+N++ Y LLS + +++G W    E+  +MR+K + K   +
Sbjct: 498 AHADVELAKLAASKLLVLEPDNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNVQKLSAY 557

Query: 574 SRIE 577
           S IE
Sbjct: 558 SWIE 561



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 136/484 (28%), Positives = 230/484 (47%), Gaps = 43/484 (8%)

Query: 18  LHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFS 77
           LH  G       +P V+K+CA     +  G Q+HC A+  G   D  +  +L+  YAK  
Sbjct: 76  LHRRGSDVPPGCVPLVVKSCAILAASRQ-GKQVHCHAIVRGLLGDIFVQTALVDFYAKNG 134

Query: 78  KPESAYQLFDEMPYRDTI-------------------------------SWNSIINCFTQ 106
             + A ++FDEMP +D I                               SWNS+I C+  
Sbjct: 135 DMDCAVKVFDEMPVKDPIPMNCLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAH 194

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
            G Y  +L +FR M   G    A  +A + S+C++ G+LE G+   +L I +   + ++ 
Sbjct: 195 GGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLETGKWARSL-IAEQDLQ-NMI 252

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           V TAL+++Y KC     A R F++M  R+ V+W+ MI+G   +      ++LF  M+   
Sbjct: 253 VHTALMEMYVKCQAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATS 312

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
            KP  VTL  VL ACA+L     G  I  +          +L +AL+ MY +C   +  A
Sbjct: 313 CKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGH-VGRA 371

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
           R +F R + K V+ W+S++RG + +G   +A+ L+  M  E ++PN +T +A+L++CT  
Sbjct: 372 RSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTACTHA 431

Query: 347 SFLSHGLGVHCYIMKA--GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR-DFVSWT 403
             +  G+      MK    ++  V     ++++  K G +  +++   +M    + V W+
Sbjct: 432 GLVDQGMSFF-KEMKTIHHVSPQVEHCACIVDLLCKSGRLREAYKFICDMEVEPNAVIWS 490

Query: 404 TLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC-NHAGLVKEAETLFNNVMK 462
           TL+S    H   E  L      +   +EPD  ++  +LS     AGL  +   +  ++M+
Sbjct: 491 TLLSACRAHADVE--LAKLAASKLLVLEPDNSSIYVLLSNIYADAGLWGDVREI-RDLMR 547

Query: 463 EKKI 466
            K +
Sbjct: 548 SKNV 551


>gi|356518950|ref|XP_003528138.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g64310-like [Glycine max]
          Length = 551

 Score =  288 bits (737), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 173/530 (32%), Positives = 275/530 (51%), Gaps = 3/530 (0%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           QLH   LK+    DP  +  ++ +YA  +   SA+ LFD+ P R    WNS+I  F Q+ 
Sbjct: 24  QLHAFLLKTHLSQDPFYATKIVRLYAANNDINSAHHLFDKTPNRSVYLWNSMIRAFAQSQ 83

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
            +  ++ +FR M            A +I  C+   +  + R++H   +  G     V  S
Sbjct: 84  RFFNAISLFRTMLGADISPDGHTYACVIRACANNFDFGMLRRVHGGAVAAGLGRDPVCCS 143

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
            AL+  YSK      A RVF+ +   + V W ++ISG      +D G+ +F  M+  G+K
Sbjct: 144 -ALVAAYSKLGLVHEARRVFDGIAEPDLVLWNSLISGYGGFGLWDVGMQMFSMMRLFGMK 202

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
           P   TL  +L+  A+   L  G+ +H  +   G D D H+ + L+ MY  C       R+
Sbjct: 203 PDGYTLAGLLVGIADSGMLSIGQGLHCLSQKSGLDSDSHVGSLLLSMYSRCKHMASAYRV 262

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
            F      D+V WS++I GYSQSG+  + +  F ++ +E  +P+SV + ++L+S  + + 
Sbjct: 263 -FCSILNPDLVTWSALIVGYSQSGEYEKVLLFFRKLNMESKKPDSVLIASVLASIAQMAN 321

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
           +  G  VH Y ++ GL  DV + +AL++MYSKCG +     +F  M  R+ VS+ ++I G
Sbjct: 322 VGLGCEVHGYALRHGLELDVRVSSALVDMYSKCGFLHLGICVFRVMPERNIVSFNSVILG 381

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468
           +G HG   EA ++F +M E G+ PD  T  ++L AC HAGLVK+   +F  +  E  I  
Sbjct: 382 FGLHGCASEAFRMFDKMLEKGLVPDEATFSSLLCACCHAGLVKDGREIFQRMKHEFNIRA 441

Query: 469 AIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
             EHY   V LLG +G++E+A  +  ++P      IL +L+S C I G  E+AE +AHQL
Sbjct: 442 RPEHYVYMVKLLGSAGELEEAYNLTQSLPEPVDKAILGALLSCCNICGNSELAETVAHQL 501

Query: 529 IEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIEN 578
            E+ P +     +LS + +  G W   +++ R     G  K  G S I+ 
Sbjct: 502 FESSPADNVYRVMLSNIYAGDGRWDDVKKL-RDNMTGGPRKMPGLSWIDG 550



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 114/207 (55%), Gaps = 1/207 (0%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G  LHC + KSG D+D  + + L+SMY++     SAY++F  +   D ++W+++I  ++Q
Sbjct: 224 GQGLHCLSQKSGLDSDSHVGSLLLSMYSRCKHMASAYRVFCSILNPDLVTWSALIVGYSQ 283

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           +G Y + L  FR++ +      + L+A +++  +Q+  + LG ++H   +  G  EL V 
Sbjct: 284 SGEYEKVLLFFRKLNMESKKPDSVLIASVLASIAQMANVGLGCEVHGYALRHG-LELDVR 342

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           VS+AL+D+YSKC    + + VF  M  RN VS+ ++I G            +F  M  +G
Sbjct: 343 VSSALVDMYSKCGFLHLGICVFRVMPERNIVSFNSVILGFGLHGCASEAFRMFDKMLEKG 402

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAI 253
           + P   T + +L AC     +++G+ I
Sbjct: 403 LVPDEATFSSLLCACCHAGLVKDGREI 429



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 74/145 (51%), Gaps = 2/145 (1%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           YE+ L L+ ++L+      ++ ++ SV+ + A    +   G ++H  AL+ G + D  +S
Sbjct: 287 YEKVL-LFFRKLNMESKKPDSVLIASVLASIA-QMANVGLGCEVHGYALRHGLELDVRVS 344

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           ++L+ MY+K         +F  MP R+ +S+NS+I  F  +G    +  MF +M   G V
Sbjct: 345 SALVDMYSKCGFLHLGICVFRVMPERNIVSFNSVILGFGLHGCASEAFRMFDKMLEKGLV 404

Query: 127 LKAELLAGIISLCSQIGELELGRQI 151
                 + ++  C   G ++ GR+I
Sbjct: 405 PDEATFSSLLCACCHAGLVKDGREI 429


>gi|147844170|emb|CAN80560.1| hypothetical protein VITISV_031385 [Vitis vinifera]
          Length = 730

 Score =  288 bits (737), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 165/532 (31%), Positives = 277/532 (52%), Gaps = 45/532 (8%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           GL LH   LK+G+ +D  +SN +++MYAK      A Q+FDEM  ++ +SW+++I+ + Q
Sbjct: 29  GLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDEMFEKNLVSWSAMISGYDQ 88

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
            G    +++++ +M+L   V    + A +IS C+ +  L  G++IH+  +  G +E   F
Sbjct: 89  AGEPQMAIDLYSQMFL---VPNEYVFASVISACASLSALTQGQKIHSRSLKFG-YESISF 144

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           VS +L+ +Y KC+    AL VF      N VS+ A+I+G +++Q  + G + F+ M ++G
Sbjct: 145 VSNSLISMYMKCNQCSDALSVFTNTPEPNCVSYNALITGFVENQQLERGFEFFKLMXQQG 204

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           + P R     VL  C    +L+ G  +H        D    +   ++ MY E    +  A
Sbjct: 205 LIPDRFAFMGVLGICTTTENLKRGTELHCQTVKLNLDSTPFIGNVIITMYSELN-LIQEA 263

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE-RIEPNSVTLLAILSSCTR 345
              F   + KDV+ W+++I   S   D ++ +++F  M  E  + P+  T  + L++C  
Sbjct: 264 EKAFRLIEEKDVISWNTLIAACSHCDDHAKGLRVFKHMTEETNVRPDDFTFTSALAACAG 323

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
            + +SHG  +H ++M+  L  D+ + NAL+NMY+KCG I  ++ IF++M   + VSW T+
Sbjct: 324 LASMSHGKQIHAHLMRTSLYRDLGVDNALVNMYAKCGCIGYAYDIFSKMVHHNLVSWNTI 383

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           I+G+G HG GE A++LF +M   G+ PD++T + +L+ACNHAGL +E    F        
Sbjct: 384 IAGFGNHGLGERAVELFEQMNAIGIRPDSVTFIGLLTACNHAGLAEEYMRKF-------- 435

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
                                          P      +L SL+SA R+HG + + E LA
Sbjct: 436 -------------------------------PFWNDPVVLVSLLSASRLHGDVVIGERLA 464

Query: 526 HQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
             L++ +P   + Y LLS + +  G W    E  + ++  GL K  G S IE
Sbjct: 465 KWLLKLQPVTTSPYVLLSNLYASDGMWDSVAEARKRLKGSGLKKEPGHSLIE 516



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 108/227 (47%), Gaps = 4/227 (1%)

Query: 236 IVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV 295
           I+   C  +  LR G ++H      G   D  +S  +++MY +C      AR +F+    
Sbjct: 15  ILCYGCDIVNALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTF-ARQVFDEMFE 73

Query: 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV 355
           K++V WS++I GY Q+G+   A+ L+S+M L    PN     +++S+C   S L+ G  +
Sbjct: 74  KNLVSWSAMISGYDQAGEPQMAIDLYSQMFLV---PNEYVFASVISACASLSALTQGQKI 130

Query: 356 HCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYG 415
           H   +K G      + N+L++MY KC   + +  +F      + VS+  LI+G+  +   
Sbjct: 131 HSRSLKFGYESISFVSNSLISMYMKCNQCSDALSVFTNTPEPNCVSYNALITGFVENQQL 190

Query: 416 EEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462
           E   + F  M + G+ PD    + +L  C     +K    L    +K
Sbjct: 191 ERGFEFFKLMXQQGLIPDRFAFMGVLGICTTTENLKRGTELHCQTVK 237



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 71/129 (55%), Gaps = 4/129 (3%)

Query: 335 TLLAILS-SCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNE 393
           TL  IL   C   + L  GL +H  ++K G   DV + N ++NMY+KCG  T + Q+F+E
Sbjct: 11  TLKKILCYGCDIVNALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDE 70

Query: 394 MAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEA 453
           M  ++ VSW+ +ISGY   G  + A+ L+ +M    + P+     +++SAC     + + 
Sbjct: 71  MFEKNLVSWSAMISGYDQAGEPQMAIDLYSQM---FLVPNEYVFASVISACASLSALTQG 127

Query: 454 ETLFNNVMK 462
           + + +  +K
Sbjct: 128 QKIHSRSLK 136


>gi|218199277|gb|EEC81704.1| hypothetical protein OsI_25308 [Oryza sativa Indica Group]
          Length = 749

 Score =  288 bits (737), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 165/505 (32%), Positives = 284/505 (56%), Gaps = 17/505 (3%)

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
           + +L++ Y +  +   A  LFD+MP R  ++WN++I+   ++     ++  F  M   G 
Sbjct: 97  TTALLAFYCRSRRLPEAQHLFDQMPARTAVTWNTLIHGHARSAAPGLAVAAFARMARAGV 156

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
              A  ++ ++  C ++ +   G  +H++ ++ G F  SV V TAL+D+Y+KCHH   A 
Sbjct: 157 SPTASSVSSVLVACVRLEDAAAGATLHSVGLMHG-FCASVVVGTALVDMYAKCHHLGAAQ 215

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
           +VF +M  +N  ++TA+++G + S+     + L R M+R GV P  +T + +L + A   
Sbjct: 216 QVFREMEEKNVATFTALVAGFVLSRRPHDAMLLVREMERSGVAPNLMTYSSLLSSFASPE 275

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK------DVV 299
           D+ +GK +H      G + D  + +AL+ MY +C        I+ +  KV+      D V
Sbjct: 276 DIDHGKQVHCAVLKKGLEHDQFVLSALVTMYSKCG-------ILEDFVKVQMSVSCQDQV 328

Query: 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
            ++S+I G S  G   EA + F  MR    + +  T  ++L +    S L  G  VH  I
Sbjct: 329 SFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASVLKAIGSSSSLLEGRQVHTLI 388

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEAL 419
           +K G +  V + N+L++MY++ G+I  S+ +F  M A + VSW +L+SG   HG+G+E +
Sbjct: 389 LKIGYDSVVDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVV 448

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK--IALAIEHYACYV 477
           ++F +M+   V+PD IT L++L+AC+H GLV +    F N+MK+K   +    EHYAC V
Sbjct: 449 EMFEQMRRLHVQPDHITFLSVLTACSHVGLVDKGLEYF-NLMKDKGYLVGARTEHYACMV 507

Query: 478 DLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAA 537
           DLLG++G + +A  +++ MP+KP   +  +L+SAC+IHG LE+   ++ +LIE  P +++
Sbjct: 508 DLLGRAGYLNEAEYLINGMPIKPGASVYRALLSACQIHGNLEIVIRVSKRLIELNPHDSS 567

Query: 538 NYTLLSMVCSESGNWLGAEEVWRVM 562
            +  LS   +  G W  A E+   M
Sbjct: 568 VHVQLSNAFAGDGRWGNAAEIREAM 592



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 92/396 (23%), Positives = 180/396 (45%), Gaps = 6/396 (1%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           +G+    + + SV+ AC   +     G  LH   L  G  A  V+  +L+ MYAK     
Sbjct: 154 AGVSPTASSVSSVLVACVRLEDAA-AGATLHSVGLMHGFCASVVVGTALVDMYAKCHHLG 212

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
           +A Q+F EM  ++  ++ +++  F  +     ++ + REM   G        + ++S  +
Sbjct: 213 AAQQVFREMEEKNVATFTALVAGFVLSRRPHDAMLLVREMERSGVAPNLMTYSSLLSSFA 272

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
              +++ G+Q+H  V+  G  E   FV +AL+ +YSKC      ++V   +  +++VS+ 
Sbjct: 273 SPEDIDHGKQVHCAVLKKG-LEHDQFVLSALVTMYSKCGILEDFVKVQMSVSCQDQVSFN 331

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
           ++ISG             F  M+R G      T   VL A      L  G+ +H      
Sbjct: 332 SVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASVLKAIGSSSSLLEGRQVHTLILKI 391

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
           G+D    +  +L+ MY     A+  +  +F   +  ++V W+S++ G +Q G   E +++
Sbjct: 392 GYDSVVDVQNSLISMYAR-HGAIGESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEM 450

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN--ALMNMY 378
           F +MR   ++P+ +T L++L++C+    +  GL     +   G        +   ++++ 
Sbjct: 451 FEQMRRLHVQPDHITFLSVLTACSHVGLVDKGLEYFNLMKDKGYLVGARTEHYACMVDLL 510

Query: 379 SKCGSITSSHQIFNEMAARDFVS-WTTLISGYGFHG 413
            + G +  +  + N M  +   S +  L+S    HG
Sbjct: 511 GRAGYLNEAEYLINGMPIKPGASVYRALLSACQIHG 546



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 116/234 (49%), Gaps = 6/234 (2%)

Query: 13  LYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISM 72
           L  +E+  SG+  N     S++ + A  +   H G Q+HC  LK G + D  + ++L++M
Sbjct: 247 LLVREMERSGVAPNLMTYSSLLSSFASPEDIDH-GKQVHCAVLKKGLEHDQFVLSALVTM 305

Query: 73  YAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELL 132
           Y+K    E   ++   +  +D +S+NS+I+  +  G    + + F EM   G  +     
Sbjct: 306 YSKCGILEDFVKVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTF 365

Query: 133 AGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR--VFEQ 190
           A ++        L  GRQ+H L++  G ++  V V  +L+ +Y++  H  I     VF  
Sbjct: 366 ASVLKAIGSSSSLLEGRQVHTLILKIG-YDSVVDVQNSLISMYAR--HGAIGESNGVFIS 422

Query: 191 MVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
           M   N VSW +++SGC    +    +++F  M+R  V+P  +T   VL AC+ +
Sbjct: 423 MEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSHV 476


>gi|357148978|ref|XP_003574958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 598

 Score =  288 bits (737), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 172/563 (30%), Positives = 298/563 (52%), Gaps = 6/563 (1%)

Query: 18  LHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFS 77
           L  +GL+ + +  PS+ K+CA A      G  +H  AL  G+ +D  +  SL+ MYAK +
Sbjct: 36  LLAAGLHGDASTFPSLAKSCA-ALRLPRLGCSVHAHALLVGAASDVFVLTSLLDMYAKCA 94

Query: 78  KPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS 137
               A +LFDEMP    ISWN ++  ++++     ++ MF  M   G       L G++S
Sbjct: 95  CLPDARRLFDEMPSPTLISWNCMVTAYSKSSCVTEAVAMFNTMRGVGVRPSGATLVGLLS 154

Query: 138 -LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE 196
                +     G  ++   +  G  +  + V  ++L +  +      A  +F+ M  ++ 
Sbjct: 155 GRVDSLSTRNPGLCLYGYSMKSG-LDTDLPVLNSVLTMLVRAGQLYDACLLFDSMHEKSV 213

Query: 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           V+W+AM+SG + + +Y     LF  MQ  G K   V L  ++ A   L +L   K +H  
Sbjct: 214 VTWSAMVSGFLQTGDYMKVFGLFNHMQTAGYKFDSVALVNLISAAVLLGNLLVAKGVHAL 273

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
               GF+ +  L ++L+++Y +C + L  A+ +F+    K+VV+W+S+I GY++ G   +
Sbjct: 274 LIKSGFESEQDLMSSLVNLYAKCGD-LEAAQEVFDAVHRKNVVLWTSMISGYAEGGHPDK 332

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
           A+K+F  M    +EPN  T+ ++LS+C      +    V  +++  GL  D+ +   L++
Sbjct: 333 ALKMFDSMLCTDVEPNEATVSSVLSACANLGSANQAKKVEDHVVAIGLQKDLRVATGLID 392

Query: 377 MYSKCGSITSSHQIFNEMAA--RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434
            Y KCG++T + +IF+ +    RD   W+ +I+GY   G G EAL LF EMQ  GV+PDA
Sbjct: 393 TYCKCGNVTLAREIFDGVTTTNRDLAIWSAMINGYACIGEGSEALVLFNEMQNQGVQPDA 452

Query: 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS 494
           I    +L+ACN++GLV E    F ++  E  I  +IEHY C +DLL K+G +  A +   
Sbjct: 453 IVFTHLLTACNYSGLVDEGLQCFRSLTVEYGIEPSIEHYMCTIDLLCKAGHLSAAKEFFR 512

Query: 495 TMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLG 554
            +P++   ++L+ +++A   H      E+++ +L+  EP N+ +  L++ + +  G W  
Sbjct: 513 KIPIQLQNQVLAPILTAYSAHCADSSIELVSEELLNLEPHNSDHCVLMANMLNCLGKWKK 572

Query: 555 AEEVWRVMRAKGLSKSYGFSRIE 577
           A +  R++  +GL K  G S IE
Sbjct: 573 ATDYRRLITKQGLVKEPGRSCIE 595



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/396 (28%), Positives = 208/396 (52%), Gaps = 13/396 (3%)

Query: 97  WNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVI 156
           WN +I     +G Y R L  +  +   G    A     +   C+ +    LG  +HA  +
Sbjct: 13  WNRLIQLAAASGSYSRCLRHYVPLLAAGLHGDASTFPSLAKSCAALRLPRLGCSVHAHAL 72

Query: 157 VDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGI 216
           + G+    VFV T+LLD+Y+KC     A R+F++M     +SW  M++    S      +
Sbjct: 73  LVGAAS-DVFVLTSLLDMYAKCACLPDARRLFDEMPSPTLISWNCMVTAYSKSSCVTEAV 131

Query: 217 DLFRAMQREGVKPTRVTLTIVLLACAELRDLRN-GKAIHGYAYCCGFDFDHHLSAALMHM 275
            +F  M+  GV+P+  TL  +L    +    RN G  ++GY+   G D D  +  +++ M
Sbjct: 132 AMFNTMRGVGVRPSGATLVGLLSGRVDSLSTRNPGLCLYGYSMKSGLDTDLPVLNSVLTM 191

Query: 276 YCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVT 335
                + L+ A ++F+    K VV WS+++ G+ Q+GD  +   LF+ M+    + +SV 
Sbjct: 192 LVRAGQ-LYDACLLFDSMHEKSVVTWSAMVSGFLQTGDYMKVFGLFNHMQTAGYKFDSVA 250

Query: 336 LLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA 395
           L+ ++S+      L    GVH  ++K+G   +  + ++L+N+Y+KCG + ++ ++F+ + 
Sbjct: 251 LVNLISAAVLLGNLLVAKGVHALLIKSGFESEQDLMSSLVNLYAKCGDLEAAQEVFDAVH 310

Query: 396 ARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAET 455
            ++ V WT++ISGY   G+ ++AL++F  M  + VEP+  TV ++LSAC + G   +A+ 
Sbjct: 311 RKNVVLWTSMISGYAEGGHPDKALKMFDSMLCTDVEPNEATVSSVLSACANLGSANQAKK 370

Query: 456 LFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACK 491
           + ++V     +A+ ++      DL   +G I+  CK
Sbjct: 371 VEDHV-----VAIGLQK-----DLRVATGLIDTYCK 396



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 96/383 (25%), Positives = 184/383 (48%), Gaps = 25/383 (6%)

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258
           W  +I     S +Y   +  +  +   G+     T   +  +CA LR  R G ++H +A 
Sbjct: 13  WNRLIQLAAASGSYSRCLRHYVPLLAAGLHGDASTFPSLAKSCAALRLPRLGCSVHAHAL 72

Query: 259 CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAM 318
             G   D  +  +L+ MY +C   L  AR +F+      ++ W+ ++  YS+S  ++EA+
Sbjct: 73  LVGAASDVFVLTSLLDMYAKCA-CLPDARRLFDEMPSPTLISWNCMVTAYSKSSCVTEAV 131

Query: 319 KLFSRMRLERIEPNSVTLLAILSS-CTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
            +F+ MR   + P+  TL+ +LS      S  + GL ++ Y MK+GL+ D+ + N+++ M
Sbjct: 132 AMFNTMRGVGVRPSGATLVGLLSGRVDSLSTRNPGLCLYGYSMKSGLDTDLPVLNSVLTM 191

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
             + G +  +  +F+ M  +  V+W+ ++SG+   G   +   LF  MQ +G + D++ +
Sbjct: 192 LVRAGQLYDACLLFDSMHEKSVVTWSAMVSGFLQTGDYMKVFGLFNHMQTAGYKFDSVAL 251

Query: 438 LAILSACNHAGLVKEAETLFNNVMKEKKI-ALAIEH--------YACYVDLLGKSGKIED 488
           + ++S          A  L  N++  K + AL I+          +  V+L  K G +E 
Sbjct: 252 VNLIS----------AAVLLGNLLVAKGVHALLIKSGFESEQDLMSSLVNLYAKCGDLEA 301

Query: 489 ACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLI--EAEPENAANYTLLSMVC 546
           A +V   +  K +  + +S++S     G  + A  +   ++  + EP  A   ++LS  C
Sbjct: 302 AQEVFDAVHRK-NVVLWTSMISGYAEGGHPDKALKMFDSMLCTDVEPNEATVSSVLS-AC 359

Query: 547 SESGNWLGAEEVWRVMRAKGLSK 569
           +  G+   A++V   + A GL K
Sbjct: 360 ANLGSANQAKKVEDHVVAIGLQK 382


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  288 bits (737), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 170/523 (32%), Positives = 260/523 (49%), Gaps = 81/523 (15%)

Query: 55  LKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSL 114
             S  D + V  N L+  Y +  + + A  LFD MP RD ISWN +I  + QNG    + 
Sbjct: 207 FDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEAR 266

Query: 115 EMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDL 174
            +F E+ +                          R + A   +     +S FV   +LD 
Sbjct: 267 RLFEELPI--------------------------RDVFAWTAM-----VSGFVQNGMLDE 295

Query: 175 YSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTL 234
                    A R+FE+M  +NEVSW AMI+G + SQ  +   +LF  M      P+R T 
Sbjct: 296 ---------ATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQM------PSRNTS 340

Query: 235 TIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTK 294
           +   +             + GYA C   D                      A+I+F+   
Sbjct: 341 SWNTM-------------VTGYAQCGNID---------------------QAKILFDEMP 366

Query: 295 VKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG 354
            +D + W+++I GY+QSG   EA+ LF +M+ +    N   L   LSSC   + L  G  
Sbjct: 367 QRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQ 426

Query: 355 VHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGY 414
           +H  ++KAG       GNAL+ MY KCGSI  +  +F ++  +D VSW T+I+GY  HG+
Sbjct: 427 LHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGF 486

Query: 415 GEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYA 474
           G+EAL LF  M+ + ++PD +T++ +LSAC+H GLV +    FN++ +   I    +HY 
Sbjct: 487 GKEALALFESMKMT-IKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYT 545

Query: 475 CYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPE 534
           C +DLLG++G++++A  ++ +MP  P      +L+ A RIHG  E+ E  A ++ E EP+
Sbjct: 546 CMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPD 605

Query: 535 NAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           N+  Y LLS + + SG W    E+   MR KG+ K  G+S +E
Sbjct: 606 NSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVE 648



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 119/498 (23%), Positives = 218/498 (43%), Gaps = 42/498 (8%)

Query: 60  DADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFRE 119
           D+D V  N  IS Y +  + ESA  +F+ M  R T+++N++I+ +  N  +  + ++F +
Sbjct: 57  DSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEK 116

Query: 120 MYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH 179
           M     +    +L+G +   +      L  Q+    +V  +  LS F     ++      
Sbjct: 117 MPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEE----- 171

Query: 180 HWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLL 239
               A ++F+QM+++NE+SW  ++S  + +   +    LF          +++   IV  
Sbjct: 172 ----ARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLF---------DSKMDWEIVSW 218

Query: 240 ACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVV 299
            C     +R  +     +          +S  +M         L  AR +FE   ++DV 
Sbjct: 219 NCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVF 278

Query: 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
            W++++ G+ Q+G L EA ++F  M     E N V+  A+++   +             I
Sbjct: 279 AWTAMVSGFVQNGMLDEATRIFEEM----PEKNEVSWNAMIAGYVQSQ----------QI 324

Query: 360 MKAGLNFD------VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHG 413
            KA   FD       S  N ++  Y++CG+I  +  +F+EM  RD +SW  +ISGY   G
Sbjct: 325 EKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSG 384

Query: 414 YGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY 473
             EEAL LF++M+  G   +   +   LS+C     ++  + L   ++K       I   
Sbjct: 385 QSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGN 444

Query: 474 ACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG-RLEVAEMLAHQLIEAE 532
           A    + GK G IE+A  V   +  K      +++++    HG   E   +     +  +
Sbjct: 445 ALLA-MYGKCGSIEEAFDVFEDITEKDIVS-WNTMIAGYARHGFGKEALALFESMKMTIK 502

Query: 533 PENAANYTLLSMVCSESG 550
           P++     +LS  CS +G
Sbjct: 503 PDDVTLVGVLS-ACSHTG 519



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 98/199 (49%), Gaps = 8/199 (4%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E+ LHL+ +     G+ + +A L   + +CA     +  G QLH   +K+G     +  N
Sbjct: 387 EEALHLFIKMKRDGGILNRSA-LACALSSCAEIAALE-LGKQLHGRLVKAGFQTGYIAGN 444

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +L++MY K    E A+ +F+++  +D +SWN++I  + ++GF   +L +F  M +    +
Sbjct: 445 ALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKM---TI 501

Query: 128 KAE--LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
           K +   L G++S CS  G ++ G +    +  +     +    T ++DL  +      AL
Sbjct: 502 KPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEAL 561

Query: 186 RVFEQMVI-RNEVSWTAMI 203
            + + M    +  +W A++
Sbjct: 562 NLMKSMPFYPDAATWGALL 580


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  288 bits (737), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 177/578 (30%), Positives = 303/578 (52%), Gaps = 9/578 (1%)

Query: 6   FYEQTLHLYKQELHPSG---LYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDAD 62
           F E++  L  + +  +G      + A L +V+  CA  +     G  +H  A+K   D +
Sbjct: 18  FSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCA-REREIGLGKGVHGWAVKLRLDKE 76

Query: 63  PVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL 122
            V++N+L+ MY+K     +A  +F     ++ +SWN+++  F+  G    + ++ R+M  
Sbjct: 77  LVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLA 136

Query: 123 CGFVLKAE--LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
            G  +KA+   +   + +C     L   +++H   +    F  +  V+ A +  Y+KC  
Sbjct: 137 GGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQ-EFVYNELVANAFVASYAKCGS 195

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
              A RVF  +  +   SW A+I G   S +    +D    M+  G+ P   T+  +L A
Sbjct: 196 LSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSA 255

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
           C++L+ LR GK +HG+      + D  +  +++ +Y  C E L   + +F+  + K +V 
Sbjct: 256 CSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGE-LCTVQALFDAMEDKSLVS 314

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           W+++I GY Q+G    A+ +F +M L  I+   ++++ +  +C+    L  G   H Y +
Sbjct: 315 WNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYAL 374

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
           K  L  D  I  +L++MY+K GSIT S ++FN +  +   SW  +I GYG HG  +EA++
Sbjct: 375 KHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIK 434

Query: 421 LFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLL 480
           LF EMQ +G  PD +T L +L+ACNH+GL+ E     + +     +   ++HYAC +D+L
Sbjct: 435 LFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDML 494

Query: 481 GKSGKIEDACKVVS-TMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANY 539
           G++G+++ A +VV+  M  +    I  SL+S+CRIH  LE+ E +A +L E EPE   NY
Sbjct: 495 GRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENY 554

Query: 540 TLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            LLS + +  G W    +V + M    L K  G S IE
Sbjct: 555 VLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIE 592



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 125/472 (26%), Positives = 235/472 (49%), Gaps = 23/472 (4%)

Query: 92  RDTISWNSIINCFTQNGFYVRSL----EMFREMYLCGFVLKAELLAGIISLCSQIGELEL 147
           R+ +SWNS+I  F+ NGF   S     EM  E     F+     L  ++ +C++  E+ L
Sbjct: 1   RNFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL 60

Query: 148 GRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCI 207
           G+ +H    V    +  + ++ AL+D+YSKC     A  +F+    +N VSW  M+ G  
Sbjct: 61  GKGVHGWA-VKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFS 119

Query: 208 DSQNYDTGIDLFRAM--QREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFD 265
              +     D+ R M    E VK   VT+   +  C     L + K +H Y+    F ++
Sbjct: 120 AEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYN 179

Query: 266 HHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR 325
             ++ A +  Y +C  +L  A+ +F   + K V  W+++I G++QS D   ++    +M+
Sbjct: 180 ELVANAFVASYAKCG-SLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMK 238

Query: 326 LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSIT 385
           +  + P+S T+ ++LS+C++   L  G  VH +I++  L  D+ +  +++++Y  CG + 
Sbjct: 239 ISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELC 298

Query: 386 SSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
           +   +F+ M  +  VSW T+I+GY  +G+ + AL +F +M   G++   I+++ +  AC+
Sbjct: 299 TVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACS 358

Query: 446 -----HAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKP 500
                  G    A  L + +  +  IA ++      +D+  K+G I  + KV + +  K 
Sbjct: 359 LLPSLRLGREAHAYALKHLLEDDAFIACSL------IDMYAKNGSITQSSKVFNGLKEK- 411

Query: 501 STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV--CSESG 550
           ST   ++++    IHG  + A  L  ++ +    N  + T L ++  C+ SG
Sbjct: 412 STASWNAMIMGYGIHGLAKEAIKLFEEM-QRTGHNPDDLTFLGVLTACNHSG 462


>gi|302771271|ref|XP_002969054.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
 gi|300163559|gb|EFJ30170.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
          Length = 696

 Score =  288 bits (736), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 165/561 (29%), Positives = 296/561 (52%), Gaps = 8/561 (1%)

Query: 18  LHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFS 77
           +   G+ ++  I+ S++ AC   Q  +  G +LH   + +G   D  +  +L+ MYAK  
Sbjct: 1   MEERGIVADKFIVTSLVAACTKLQALEE-GRRLHEHLIITGFRTDIPLETALLQMYAKCG 59

Query: 78  KPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS 137
             + A ++F+ M  +D  +W+SII+ + + G    ++ ++R M   G        A  + 
Sbjct: 60  SLDDAKRVFEGMEIKDLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALG 119

Query: 138 LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197
            C+ +  L  GR IH  ++     +  V +  +LL++Y KC   + A +VFE M  RN  
Sbjct: 120 GCASVAGLADGRAIHQRILASKVPQDDV-LQDSLLNMYLKCDEMVEARKVFEGMKARNVR 178

Query: 198 SWTAMISGCIDSQNYDTGIDLFRAMQR-EGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256
           S+TAMIS  + +  +   ++LF  M + E ++P   T   +L A   L +L  G+ +H +
Sbjct: 179 SYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRH 238

Query: 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE 316
               GFD +  +  AL+ MY +C   +  AR +F+    ++V+ W+S+I  Y+Q G+  E
Sbjct: 239 LASRGFDTNVVVQNALVTMYGKCGSPVE-ARKVFDSMTARNVISWTSMIAAYAQHGNPQE 297

Query: 317 AMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376
           A+ LF RM    +EP+ V+  + L++C     L  G  +H  +++A L     +  +L++
Sbjct: 298 ALNLFKRMD---VEPSGVSFSSALNACALLGALDEGREIHHRVVEAHLA-SPQMETSLLS 353

Query: 377 MYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAIT 436
           MY++CGS+  + ++FN M  RD  S   +I+ +  HG  ++AL+++  M++ G+  D IT
Sbjct: 354 MYARCGSLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRRMEQEGIPADGIT 413

Query: 437 VLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
            +++L AC+H  LV +    F +++ +  +   +EHY C VD+LG+SG++ DA ++V TM
Sbjct: 414 FVSVLVACSHTSLVADCRDFFQSLVMDHGVVPLVEHYLCMVDVLGRSGRLGDAEELVETM 473

Query: 497 PMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAE 556
           P +       +L+S C+ HG L   E  A ++ E  P     Y  LS + + +  +  A 
Sbjct: 474 PYQTDAVAWMTLLSGCKRHGDLNRGERAARKVFELAPAETLPYVFLSNMYAAAKRFDDAR 533

Query: 557 EVWRVMRAKGLSKSYGFSRIE 577
            V + M  +G++     S IE
Sbjct: 534 RVRKEMEERGVTTPVAVSYIE 554


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  288 bits (736), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 141/429 (32%), Positives = 252/429 (58%), Gaps = 2/429 (0%)

Query: 149 RQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCID 208
           RQ+HA +  +G+F  ++ V+  LL +Y +      A  +F+ M  R+  SW+ ++ G   
Sbjct: 70  RQVHAQIATNGAFR-NLAVANKLLYMYVERGALEDAQELFDGMSKRHPYSWSVIVGGYAK 128

Query: 209 SQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHL 268
             N+ +   +FR + R G      +  +V+ AC +L+DL+ G+ IH     CG D+ H +
Sbjct: 129 VGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCGRLIHCITLKCGLDYGHFV 188

Query: 269 SAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER 328
            A L+ MY  C + +  A  IF +   +D+  W+ +I   ++SG   E++  F RMR + 
Sbjct: 189 CATLVDMYARC-KVVEDAHQIFVKMWKRDLATWTVMIGALAESGVPVESLVFFDRMRNQG 247

Query: 329 IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSH 388
           I P+ V L+ ++ +C +   ++    +H YI   G + DV +G A+++MY+KCGS+ S+ 
Sbjct: 248 IVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILGTAMIDMYAKCGSVESAR 307

Query: 389 QIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG 448
            IF+ M  R+ ++W+ +I+ YG+HG GE+AL+LF  M  SG+ P+ IT +++L AC+HAG
Sbjct: 308 WIFDRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLRSGILPNRITFVSLLYACSHAG 367

Query: 449 LVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSL 508
           L++E +  F+++  E  +   ++HY C VDLLG++G++++A +++  MP++    +  +L
Sbjct: 368 LIEEGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWGAL 427

Query: 509 VSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLS 568
           + ACRIH  L++AE +A  L++ + +   +Y LLS + + +G W    +   +M   GL 
Sbjct: 428 LGACRIHRHLDLAERVARSLLKLQSQKPGHYVLLSNIYANAGKWEDMAKTRDLMTKGGLR 487

Query: 569 KSYGFSRIE 577
           K  G + IE
Sbjct: 488 KIPGRTWIE 496



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 132/478 (27%), Positives = 220/478 (46%), Gaps = 49/478 (10%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           Q+H     +G+  +  ++N L+ MY +    E A +LFD M  R   SW+ I+  + + G
Sbjct: 71  QVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELFDGMSKRHPYSWSVIVGGYAKVG 130

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
            +     MFRE+   G  L       +I  C  + +L+ GR IH + +  G  +   FV 
Sbjct: 131 NFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCGRLIHCITLKCG-LDYGHFVC 189

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
             L+D+Y++C     A ++F +M  R+  +WT MI    +S      +  F  M+ +G+ 
Sbjct: 190 ATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESGVPVESLVFFDRMRNQGIV 249

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
           P +V L  V+ ACA+L  +   KAIH Y    G+  D  L  A++ MY +C  ++  AR 
Sbjct: 250 PDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILGTAMIDMYAKCG-SVESARW 308

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
           IF+R +V++V+ WS++I  Y   G   +A++LF  M    I PN +T +++L +C+    
Sbjct: 309 IFDRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLRSGILPNRITFVSLLYACS---- 364

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
                  H  +++ G  F         +M+ + G               D   +T ++  
Sbjct: 365 -------HAGLIEEGQRF-------FSSMWDEYG------------VTPDVKHYTCMVDL 398

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468
            G  G  +EAL++   M    VE D +   A+L AC     +  AE +  +++K +    
Sbjct: 399 LGRAGRLDEALEMIEGMP---VEKDEVLWGALLGACRIHRHLDLAERVARSLLKLQSQKP 455

Query: 469 AIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGR--LEVAEML 524
              HY    ++   +GK ED  K          TR L +     +I GR  +EV E L
Sbjct: 456 G--HYVLLSNIYANAGKWEDMAK----------TRDLMTKGGLRKIPGRTWIEVGEKL 501



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 118/227 (51%), Gaps = 2/227 (0%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           +EL  SG   +    P VI+AC   +  +  G  +HC  LK G D    +  +L+ MYA+
Sbjct: 140 RELLRSGAPLDDYSAPVVIRACRDLKDLK-CGRLIHCITLKCGLDYGHFVCATLVDMYAR 198

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
               E A+Q+F +M  RD  +W  +I    ++G  V SL  F  M   G V     L  +
Sbjct: 199 CKVVEDAHQIFVKMWKRDLATWTVMIGALAESGVPVESLVFFDRMRNQGIVPDKVALVTV 258

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           +  C+++G +   + IHA +   G + L V + TA++D+Y+KC     A  +F++M +RN
Sbjct: 259 VYACAKLGAMNKAKAIHAYINGTG-YSLDVILGTAMIDMYAKCGSVESARWIFDRMQVRN 317

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
            ++W+AMI+        +  ++LF  M R G+ P R+T   +L AC+
Sbjct: 318 VITWSAMIAAYGYHGQGEKALELFPMMLRSGILPNRITFVSLLYACS 364


>gi|359480506|ref|XP_003632478.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 590

 Score =  288 bits (736), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 181/569 (31%), Positives = 286/569 (50%), Gaps = 63/569 (11%)

Query: 31  PSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMP 90
           PS+I+       H  F  Q H  ++K  S  D    N  I   A+     +A QLFDEMP
Sbjct: 16  PSIIRTIFLPIFHS-FNRQFHPLSIKLFSTQDVYAFNVQIGNLARAGNIGAARQLFDEMP 74

Query: 91  YRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII------------SL 138
           +RDT+SWNSII  + +NG +  S  +F  M     V    ++AG I              
Sbjct: 75  HRDTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQA 134

Query: 139 CSQIGELELGRQIHALVIVDGSFELS----------VFVSTALLDLYSKCHHWLIALRVF 188
             Q         I  LV  D   E S          V   TA++D Y+K      A  +F
Sbjct: 135 MPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALF 194

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
             M  +N VSWT MISG +++  +D   +LF  M  + +    V +T             
Sbjct: 195 NCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNI----VAMT------------- 237

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308
                                 A++  YC+  +    A+I+F++   +D+  W+++I GY
Sbjct: 238 ----------------------AMITGYCKEGKT-DKAKILFDQIPCRDLASWNAMITGY 274

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
           +Q+G   EA+KL S+M    ++P+  TL+++L++C+  + L  G   H  ++K+G    +
Sbjct: 275 AQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRI 334

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
           SI NAL+ MY KCGSI  S   F ++   D VSW  +I+ +  HG+ + AL  F EM+ +
Sbjct: 335 SICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSN 394

Query: 429 GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIED 488
            VEPD IT L++LSAC HAG V E+   FN++++  KI    EH+AC VD+L + G++E 
Sbjct: 395 RVEPDGITFLSLLSACGHAGKVHESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEK 454

Query: 489 ACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSE 548
           A K++  MP +    I  +L++AC +H  +++ E+ A +++E EP+N+  Y +LS + + 
Sbjct: 455 AYKIIQEMPFEADCGIWGALLAACHVHLNVKLGELAAKKIVELEPQNSGAYVVLSNIYAA 514

Query: 549 SGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           +G W     V  +MR +G+ K   +S +E
Sbjct: 515 AGMWGEVTRVRGLMREQGVKKQPAYSWME 543


>gi|356565918|ref|XP_003551183.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Glycine max]
          Length = 703

 Score =  288 bits (736), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 178/554 (32%), Positives = 286/554 (51%), Gaps = 4/554 (0%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           ++    S++K  AY    +  G QLH   LK G   +    ++L+ MYAK  + +  Y +
Sbjct: 93  DSRTFGSILKGVAYVGKLK-LGQQLHSVMLKVGLSENVFSGSALLDMYAKCGRVDDGYVV 151

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL 145
           F  MP R+ +SWN+++  +++ G    +  +   M L G  +    ++ +++L       
Sbjct: 152 FQSMPERNYVSWNTLVASYSRVGDCDMAFWVLSCMELEGVEIDDGTVSPLLTLLDNAMFY 211

Query: 146 ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI-RNEVSWTAMIS 204
           +L  Q+H  ++  G  EL   V  A +  YS+C     A RVF+  V+ R+ V+W +M+ 
Sbjct: 212 KLTMQLHCKIVKHG-LELFNTVCNATITAYSECCSLQDAERVFDGAVLCRDLVTWNSMLG 270

Query: 205 GCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDF 264
             +  +  D    +F  MQ  G +P   T T ++ AC+       GK +HG     G D 
Sbjct: 271 AYLMHEKEDLAFKVFLDMQNFGFEPDAYTYTGIVGACSVQEHKTCGKCLHGLVIKRGLDN 330

Query: 265 DHHLSAALMHMYCECTE-ALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSR 323
              +S AL+ MY    +  +  A  IF    +KD   W+SI+ GY Q G   +A++LF +
Sbjct: 331 SVPVSNALISMYIRFNDRCMEDALRIFFSMDLKDCCTWNSILAGYVQVGLSEDALRLFLQ 390

Query: 324 MRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS 383
           MR   IE +  T  A++ SC+  + L  G   H   +K G + +  +G++L+ MYSKCG 
Sbjct: 391 MRCLVIEIDHYTFSAVIRSCSDLATLQLGQQFHVLALKVGFDTNSYVGSSLIFMYSKCGI 450

Query: 384 ITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443
           I  + + F   +  + + W ++I GY  HG G  AL LF  M+E  V+ D IT +A+L+A
Sbjct: 451 IEDARKSFEATSKDNAIVWNSIIFGYAQHGQGNIALDLFYMMKERKVKLDHITFVAVLTA 510

Query: 444 CNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTR 503
           C+H GLV+E      ++  +  I    EHYAC +DL G++G ++ A  +V TMP +P   
Sbjct: 511 CSHNGLVEEGCNFIESMESDFGIPPRQEHYACAIDLYGRAGHLKKATALVETMPFEPDAM 570

Query: 504 ILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMR 563
           +L +L+ ACR  G +E+A  +A  L+E EPE    Y +LS +      W     V R+MR
Sbjct: 571 VLKTLLGACRFCGDIELASQIAKILLELEPEEHCTYVILSEMYGRFKMWGEKASVTRMMR 630

Query: 564 AKGLSKSYGFSRIE 577
            +G+ K  G+S IE
Sbjct: 631 ERGVKKVPGWSWIE 644



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 139/505 (27%), Positives = 251/505 (49%), Gaps = 10/505 (1%)

Query: 51  HCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFY 110
           HC A+K GS ADP  +N+LI+ YAK ++  SA+Q+FDEMP+RDT+SWN+II+ F  +G  
Sbjct: 16  HCRAIKLGSIADPYTANNLITSYAKCTELNSAHQVFDEMPHRDTVSWNAIISAFASSGDL 75

Query: 111 VRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTA 170
             + ++   M        +     I+   + +G+L+LG+Q+H++++  G  E +VF  +A
Sbjct: 76  DTTWQLLGAMRRSTHAFDSRTFGSILKGVAYVGKLKLGQQLHSVMLKVGLSE-NVFSGSA 134

Query: 171 LLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPT 230
           LLD+Y+KC        VF+ M  RN VSW  +++      + D    +   M+ EGV+  
Sbjct: 135 LLDMYAKCGRVDDGYVVFQSMPERNYVSWNTLVASYSRVGDCDMAFWVLSCMELEGVEID 194

Query: 231 RVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIF 290
             T++ +L         +    +H      G +  + +  A +  Y EC       R+  
Sbjct: 195 DGTVSPLLTLLDNAMFYKLTMQLHCKIVKHGLELFNTVCNATITAYSECCSLQDAERVFD 254

Query: 291 ERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLS 350
                +D+V W+S++  Y        A K+F  M+    EP++ T   I+ +C+ Q   +
Sbjct: 255 GAVLCRDLVTWNSMLGAYLMHEKEDLAFKVFLDMQNFGFEPDAYTYTGIVGACSVQEHKT 314

Query: 351 HGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS--ITSSHQIFNEMAARDFVSWTTLISG 408
            G  +H  ++K GL+  V + NAL++MY +     +  + +IF  M  +D  +W ++++G
Sbjct: 315 CGKCLHGLVIKRGLDNSVPVSNALISMYIRFNDRCMEDALRIFFSMDLKDCCTWNSILAG 374

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468
           Y   G  E+AL+LFL+M+   +E D  T  A++ +C+    ++  +      +   K+  
Sbjct: 375 YVQVGLSEDALRLFLQMRCLVIEIDHYTFSAVIRSCSDLATLQLGQQFHVLAL---KVGF 431

Query: 469 AIEHY--ACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAH 526
               Y  +  + +  K G IEDA K       K +  + +S++     HG+  +A  L +
Sbjct: 432 DTNSYVGSSLIFMYSKCGIIEDARKSFEATS-KDNAIVWNSIIFGYAQHGQGNIALDLFY 490

Query: 527 QLIEAEPE-NAANYTLLSMVCSESG 550
            + E + + +   +  +   CS +G
Sbjct: 491 MMKERKVKLDHITFVAVLTACSHNG 515



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 142/300 (47%), Gaps = 9/300 (3%)

Query: 252 AIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQS 311
           A H  A   G   D + +  L+  Y +CTE L+ A  +F+    +D V W++II  ++ S
Sbjct: 14  ATHCRAIKLGSIADPYTANNLITSYAKCTE-LNSAHQVFDEMPHRDTVSWNAIISAFASS 72

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG 371
           GDL    +L   MR      +S T  +IL        L  G  +H  ++K GL+ +V  G
Sbjct: 73  GDLDTTWQLLGAMRRSTHAFDSRTFGSILKGVAYVGKLKLGQQLHSVMLKVGLSENVFSG 132

Query: 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVE 431
           +AL++MY+KCG +   + +F  M  R++VSW TL++ Y   G  + A  +   M+  GVE
Sbjct: 133 SALLDMYAKCGRVDDGYVVFQSMPERNYVSWNTLVASYSRVGDCDMAFWVLSCMELEGVE 192

Query: 432 PDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSG--KIEDA 489
            D  TV  +L+  ++A   K    L   ++K     L + +  C   +   S    ++DA
Sbjct: 193 IDDGTVSPLLTLLDNAMFYKLTMQLHCKIVKH---GLELFNTVCNATITAYSECCSLQDA 249

Query: 490 CKVVSTMPMKPSTRILSSLVSACRIHGRLEVA--EMLAHQLIEAEPENAANYTLLSMVCS 547
            +V     +       +S++ A  +H + ++A    L  Q    EP+ A  YT +   CS
Sbjct: 250 ERVFDGAVLCRDLVTWNSMLGAYLMHEKEDLAFKVFLDMQNFGFEPD-AYTYTGIVGACS 308



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 1/147 (0%)

Query: 353 LGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFH 412
           +  HC  +K G   D    N L+  Y+KC  + S+HQ+F+EM  RD VSW  +IS +   
Sbjct: 13  IATHCRAIKLGSIADPYTANNLITSYAKCTELNSAHQVFDEMPHRDTVSWNAIISAFASS 72

Query: 413 GYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEH 472
           G  +   QL   M+ S    D+ T  +IL    + G +K  + L ++VM +  ++  +  
Sbjct: 73  GDLDTTWQLLGAMRRSTHAFDSRTFGSILKGVAYVGKLKLGQQL-HSVMLKVGLSENVFS 131

Query: 473 YACYVDLLGKSGKIEDACKVVSTMPMK 499
            +  +D+  K G+++D   V  +MP +
Sbjct: 132 GSALLDMYAKCGRVDDGYVVFQSMPER 158


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  288 bits (736), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 138/429 (32%), Positives = 258/429 (60%), Gaps = 3/429 (0%)

Query: 149 RQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCID 208
           RQ+HA V+ +G+ +  + ++  LL  Y++      A  +F+ + +R+  +W+ M+ G   
Sbjct: 20  RQVHAHVVANGTLQ-DLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAK 78

Query: 209 SQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHL 268
           + ++      FR + R GV P   TL  V+  C +  DL+ G+ IH      G   DH +
Sbjct: 79  AGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHFV 138

Query: 269 SAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER 328
            A+L+ MY +C   +  A+ +FER   KD+V W+ +I  Y+   +  E++ LF RMR E 
Sbjct: 139 CASLVDMYAKCI-VVEDAQRLFERMLSKDLVTWTVMIGAYADC-NAYESLVLFDRMREEG 196

Query: 329 IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSH 388
           + P+ V ++ ++++C +   +      + YI++ G + DV +G A+++MY+KCGS+ S+ 
Sbjct: 197 VVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAR 256

Query: 389 QIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG 448
           ++F+ M  ++ +SW+ +I+ YG+HG G++A+ LF  M    + P+ +T +++L AC+HAG
Sbjct: 257 EVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAG 316

Query: 449 LVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSL 508
           L++E    FN++ +E  +   ++HY C VDLLG++G++++A +++  M ++   R+ S+L
Sbjct: 317 LIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSAL 376

Query: 509 VSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLS 568
           + ACRIH ++E+AE  A+ L+E +P+N  +Y LLS + +++G W    +   +M  + L 
Sbjct: 377 LGACRIHSKMELAEKAANSLLELQPQNPGHYVLLSNIYAKAGKWEKVAKFRDMMTQRKLK 436

Query: 569 KSYGFSRIE 577
           K  G++ IE
Sbjct: 437 KIPGWTWIE 445



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 134/457 (29%), Positives = 220/457 (48%), Gaps = 40/457 (8%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           Q+H   + +G+  D VI+N L+  YA+    + AY LFD +  RD+ +W+ ++  F + G
Sbjct: 21  QVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAKAG 80

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
            +      FRE+  CG       L  +I  C    +L++GR IH +V+  G      FV 
Sbjct: 81  DHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLS-DHFVC 139

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
            +L+D+Y+KC     A R+FE+M+ ++ V+WT MI    D   Y++ + LF  M+ EGV 
Sbjct: 140 ASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCNAYESLV-LFDRMREEGVV 198

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
           P +V +  V+ ACA+L  +   +  + Y    GF  D  L  A++ MY +C  ++  AR 
Sbjct: 199 PDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCG-SVESARE 257

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
           +F+R K K+V+ WS++I  Y   G   +A+ LF  M    I PN VT +++L +C+    
Sbjct: 258 VFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACS---- 313

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLIS 407
                  H  +++ GL F                     + ++ E A R D   +T ++ 
Sbjct: 314 -------HAGLIEEGLRF--------------------FNSMWEEHAVRPDVKHYTCMVD 346

Query: 408 GYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIA 467
             G  G  +EAL+L   M    VE D     A+L AC     ++ AE   N++++ +   
Sbjct: 347 LLGRAGRLDEALRLIEAMT---VEKDERLWSALLGACRIHSKMELAEKAANSLLELQPQN 403

Query: 468 LAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRI 504
               HY    ++  K+GK E   K    M  +   +I
Sbjct: 404 PG--HYVLLSNIYAKAGKWEKVAKFRDMMTQRKLKKI 438



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 148/328 (45%), Gaps = 30/328 (9%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           +EL   G+  +   LP VI+ C   +T    G  +H   LK G  +D  +  SL+ MYAK
Sbjct: 90  RELLRCGVTPDNYTLPFVIRTCR-DRTDLQIGRVIHDVVLKHGLLSDHFVCASLVDMYAK 148

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
               E A +LF+ M  +D ++W  +I  +     Y  SL +F  M   G V     +  +
Sbjct: 149 CIVVEDAQRLFERMLSKDLVTWTVMIGAYADCNAY-ESLVLFDRMREEGVVPDKVAMVTV 207

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           ++ C+++G +   R  +  ++ +G F L V + TA++D+Y+KC     A  VF++M  +N
Sbjct: 208 VNACAKLGAMHRARFANDYIVRNG-FSLDVILGTAMIDMYAKCGSVESAREVFDRMKEKN 266

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
            +SW+AMI+           IDLF  M    + P RVT   +L AC+       G    G
Sbjct: 267 VISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSH-----AGLIEEG 321

Query: 256 YAYCCGFDFDHHLSAALMHMYC---------ECTEALHPARIIFERTKVKDVVIWSSIIR 306
             +      +H +   + H  C            EAL   R+I   T  KD  +WS+++ 
Sbjct: 322 LRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEAL---RLIEAMTVEKDERLWSALL- 377

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSV 334
                     A ++ S+M L     NS+
Sbjct: 378 ---------GACRIHSKMELAEKAANSL 396


>gi|359485832|ref|XP_002268817.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1736

 Score =  288 bits (736), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 178/534 (33%), Positives = 282/534 (52%), Gaps = 5/534 (0%)

Query: 47  GLQLHCTALKSG-SDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT 105
           G ++H   +++G +D    I N L++MYAK      A  +F+ M  +D++SWNS+I+   
Sbjct: 405 GREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLD 464

Query: 106 QNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSV 165
           QN     + E F  M   G +     L   +S C+ +G + LG QIH   +  G  +  V
Sbjct: 465 QNECSEDAAESFHRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLG-LDTDV 523

Query: 166 FVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQ-NYDTGIDLFRAMQR 224
            VS ALL LY++   +   L+VF  M   ++VSW ++I    DS+ +    +  F  M R
Sbjct: 524 SVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMR 583

Query: 225 EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
            G   +RVT   +L A + L        IH          D  +  AL+  Y +C E   
Sbjct: 584 GGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNE 643

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
             +I    ++ +D V W+S+I GY  +  L +AM L   M  +    +S T   ILS+C 
Sbjct: 644 CEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACA 703

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
             + L  G+ VH   ++A L  DV +G+AL++MYSKCG I  + + F  M  R+  SW +
Sbjct: 704 SVATLERGMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNS 763

Query: 405 LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK 464
           +ISGY  HG+GE+AL+LF  M   G  PD +T + +LSAC+H G V+E    F ++ +  
Sbjct: 764 MISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVY 823

Query: 465 KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSA-CRIHGR-LEVAE 522
           +++  +EH++C VDLLG++GK+++    +++MPMKP+  I  +++ A CR +GR  E+  
Sbjct: 824 RLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGR 883

Query: 523 MLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
             A  L+E EP+NA NY LL+ + +    W    +    M+   + K  G S +
Sbjct: 884 RAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARTAMKEAAVKKEAGCSWV 937



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 137/466 (29%), Positives = 235/466 (50%), Gaps = 24/466 (5%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           +LH  ++K G   +  +SN+LI++Y +     SA +LFDEM  R+ ++W  +I+ +TQNG
Sbjct: 92  ELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNG 151

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGE--LELGRQIHALVIVDGSFELSVF 166
               +   FR+M   GF+         +  C + G    +LG QIH L I    +   V 
Sbjct: 152 KPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGL-ISKTRYGSDVV 210

Query: 167 VSTALLDLYSKCHHWLIALR-VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
           V   L+ +Y  C       R VF+ + IRN +SW ++IS      +  +  DLF +MQ+E
Sbjct: 211 VCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKE 270

Query: 226 GV----KPTRVTL-TIVLLACAELR-DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCEC 279
           G+    KP   T  +++  AC+ +   L   + +       GF  D ++S+AL+  +   
Sbjct: 271 GLGFSFKPNEYTFGSLITTACSSVDFGLCVLEQMLARVEKSGFLQDLYVSSALVSGFARF 330

Query: 280 TEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAI 339
                 A+ IFE+  V++VV  + ++ G  +      A K+F  M+ + +  NS + + +
Sbjct: 331 G-LTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMK-DLVGINSDSYVVL 388

Query: 340 LSSCTRQSFLSHGLG----VHCYIMKAGLNFD-VSIGNALMNMYSKCGSITSSHQIFNEM 394
           LS+ +  S L  G      VH ++++ GLN + V+IGN L+NMY+K G+I  +  +F  M
Sbjct: 389 LSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELM 448

Query: 395 AARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAE 454
             +D VSW +LISG   +   E+A + F  M+ +G  P   T+++ LS+C   G +   E
Sbjct: 449 VEKDSVSWNSLISGLDQNECSEDAAESFHRMRRTGSMPSNFTLISTLSSCASLGWIMLGE 508

Query: 455 TLFNNVMK---EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
            +  + +K   +  ++++    A Y +    +G   +  KV S MP
Sbjct: 509 QIHCDGLKLGLDTDVSVSNALLALYAE----TGCFTECLKVFSLMP 550



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 147/520 (28%), Positives = 250/520 (48%), Gaps = 25/520 (4%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQ-HFGLQLHCTALKSGSDADPVISNSLISMYA 74
           +++  +G   N     S ++AC  +       G+Q+H    K+   +D V+ N LISMY 
Sbjct: 161 RDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYG 220

Query: 75  K-FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL--CGFVLKA-E 130
                   A  +FD +  R++ISWNSII+ +++ G  V + ++F  M     GF  K  E
Sbjct: 221 SCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNE 280

Query: 131 LLAG--IISLCSQIG-ELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
              G  I + CS +   L +  Q+ A V   G F   ++VS+AL+  +++      A  +
Sbjct: 281 YTFGSLITTACSSVDFGLCVLEQMLARVEKSG-FLQDLYVSSALVSGFARFGLTDDAKNI 339

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           FEQM +RN VS   ++ G +  +  +    +F  M ++ V     +  ++L A +E   L
Sbjct: 340 FEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEM-KDLVGINSDSYVVLLSAFSEFSVL 398

Query: 248 ----RNGKAIHGYAYCCGF-DFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
               R G+ +H +    G  D    +   L++MY + + A+  A  +FE    KD V W+
Sbjct: 399 EEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAK-SGAIADACSVFELMVEKDSVSWN 457

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
           S+I G  Q+    +A + F RMR     P++ TL++ LSSC    ++  G  +HC  +K 
Sbjct: 458 SLISGLDQNECSEDAAESFHRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKL 517

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYG-FHGYGEEALQL 421
           GL+ DVS+ NAL+ +Y++ G  T   ++F+ M   D VSW ++I           +A++ 
Sbjct: 518 GLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKY 577

Query: 422 FLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK---EKKIALAIEHYACYVD 478
           FL+M   G     +T + ILSA +   L + +  +   V+K       A+     +CY  
Sbjct: 578 FLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCY-- 635

Query: 479 LLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRL 518
             GK G++ +  K+ + M         +S++S   IH  L
Sbjct: 636 --GKCGEMNECEKIFARMSETRDEVSWNSMISG-YIHNEL 672


>gi|297725471|ref|NP_001175099.1| Os07g0203900 [Oryza sativa Japonica Group]
 gi|255677594|dbj|BAH93827.1| Os07g0203900 [Oryza sativa Japonica Group]
          Length = 721

 Score =  288 bits (736), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 162/499 (32%), Positives = 282/499 (56%), Gaps = 5/499 (1%)

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
           + +L++ Y +  +   A  LFD+MP R  ++WN++I+   ++     ++  F  M   G 
Sbjct: 52  TTALLAFYCRSRRLPEAQHLFDQMPARTAVTWNTLIHGHARSAAPGLAVAAFARMARAGV 111

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
              A  ++ ++  C ++ +   G  +H++ ++ G F  SV V TAL+D+Y+KCHH   A 
Sbjct: 112 SPTASSVSSVLVACVRLEDAAAGATLHSVGLMHG-FCASVVVGTALVDMYAKCHHLGAAQ 170

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
           +VF +M  +N  ++TA+++G + S+     + L R M+R GV P  +T + +L + A   
Sbjct: 171 QVFREMEEKNVATFTALVAGFVLSRRPHDAMLLVREMERSGVAPNLMTYSSLLSSFASPE 230

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
           D+ +GK +H      G + D  + +AL+ MY +C    +  ++       +D V ++S+I
Sbjct: 231 DIDHGKQVHCAVLKKGLEHDQFVLSALVTMYSKCGILENFVKVQMS-VSCQDQVSFNSVI 289

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
            G S  G   EA + F  MR    + +  T  ++L +    S L  G  VH  I+K G +
Sbjct: 290 SGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASVLKAIGSSSSLLEGRQVHTLILKIGYD 349

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
             V + N+L++MY++ G+I  S+ +F  M A + VSW +L+SG   HG+G+E +++F +M
Sbjct: 350 SVVDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQM 409

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK--IALAIEHYACYVDLLGKS 483
           +   V+PD IT L++L+AC+H GLV +    F N+MK+K   +    EHYAC VDLLG++
Sbjct: 410 RRLHVQPDHITFLSVLTACSHVGLVDKGLEYF-NLMKDKGYLVGARTEHYACMVDLLGRA 468

Query: 484 GKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLS 543
           G + +A  +++ MP+KP   +  +L+SAC+IHG LE+   ++ +LIE  P +++ +  LS
Sbjct: 469 GYLNEAEYLINGMPIKPGASVYRALLSACQIHGNLEIVIRVSKRLIELNPHDSSVHVQLS 528

Query: 544 MVCSESGNWLGAEEVWRVM 562
              +  G W  A E+   M
Sbjct: 529 NAFAGDGRWGNAAEIREAM 547



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 92/396 (23%), Positives = 180/396 (45%), Gaps = 6/396 (1%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           +G+    + + SV+ AC   +     G  LH   L  G  A  V+  +L+ MYAK     
Sbjct: 109 AGVSPTASSVSSVLVACVRLEDAA-AGATLHSVGLMHGFCASVVVGTALVDMYAKCHHLG 167

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
           +A Q+F EM  ++  ++ +++  F  +     ++ + REM   G        + ++S  +
Sbjct: 168 AAQQVFREMEEKNVATFTALVAGFVLSRRPHDAMLLVREMERSGVAPNLMTYSSLLSSFA 227

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
              +++ G+Q+H  V+  G  E   FV +AL+ +YSKC      ++V   +  +++VS+ 
Sbjct: 228 SPEDIDHGKQVHCAVLKKG-LEHDQFVLSALVTMYSKCGILENFVKVQMSVSCQDQVSFN 286

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
           ++ISG             F  M+R G      T   VL A      L  G+ +H      
Sbjct: 287 SVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASVLKAIGSSSSLLEGRQVHTLILKI 346

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
           G+D    +  +L+ MY     A+  +  +F   +  ++V W+S++ G +Q G   E +++
Sbjct: 347 GYDSVVDVQNSLISMYAR-HGAIGESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEM 405

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN--ALMNMY 378
           F +MR   ++P+ +T L++L++C+    +  GL     +   G        +   ++++ 
Sbjct: 406 FEQMRRLHVQPDHITFLSVLTACSHVGLVDKGLEYFNLMKDKGYLVGARTEHYACMVDLL 465

Query: 379 SKCGSITSSHQIFNEMAARDFVS-WTTLISGYGFHG 413
            + G +  +  + N M  +   S +  L+S    HG
Sbjct: 466 GRAGYLNEAEYLINGMPIKPGASVYRALLSACQIHG 501



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 117/234 (50%), Gaps = 6/234 (2%)

Query: 13  LYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISM 72
           L  +E+  SG+  N     S++ + A  +   H G Q+HC  LK G + D  + ++L++M
Sbjct: 202 LLVREMERSGVAPNLMTYSSLLSSFASPEDIDH-GKQVHCAVLKKGLEHDQFVLSALVTM 260

Query: 73  YAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELL 132
           Y+K    E+  ++   +  +D +S+NS+I+  +  G    + + F EM   G  +     
Sbjct: 261 YSKCGILENFVKVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTF 320

Query: 133 AGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR--VFEQ 190
           A ++        L  GRQ+H L++  G ++  V V  +L+ +Y++  H  I     VF  
Sbjct: 321 ASVLKAIGSSSSLLEGRQVHTLILKIG-YDSVVDVQNSLISMYAR--HGAIGESNGVFIS 377

Query: 191 MVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
           M   N VSW +++SGC    +    +++F  M+R  V+P  +T   VL AC+ +
Sbjct: 378 MEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSHV 431


>gi|193848497|gb|ACF22688.1| vegetative storage protein [Brachypodium distachyon]
          Length = 587

 Score =  288 bits (736), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 160/535 (29%), Positives = 301/535 (56%), Gaps = 9/535 (1%)

Query: 47  GLQLHCTALKSGSD-ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT 105
           G  LH  A++S +   D  ++ +L+ MYAK      +   ++     D +   S++  + 
Sbjct: 8   GRALHALAIRSCTAYTDAFVAAALVHMYAKCRGMVGSINAYNAFSEPDMVLRTSMVTGYE 67

Query: 106 QNGFYVRSLEMF-REMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELS 164
           QN     +LE F R +   GF+     L  +IS  +Q+ ++  G+  HA VI + +FE  
Sbjct: 68  QNRMAAEALEFFSRHVVGQGFMPSPVTLVSVISAAAQLKDVLNGQACHAFVIRN-NFEYD 126

Query: 165 VFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR 224
           + +  A+L  Y +      A R+FE M  ++ V+W+ M++G + S +    +  ++ M  
Sbjct: 127 LVLVNAILGFYMRIGAVQAARRLFEGMTEKDVVTWSCMVTGYVQSGDICEALTAYKKMVE 186

Query: 225 EGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMY--CECTEA 282
            G+KP  VT+  V+ AC+   D+  G+ +H  A   G + +  ++ AL+ MY  C C E 
Sbjct: 187 AGIKPNAVTVVSVVQACSLAPDIEEGRRVHDIAVKIGCELEMTVATALVDMYMKCSCHE- 245

Query: 283 LHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSS 342
              A  +F R   KD V W+ +I G++Q+G   E+M++F  M      P++VT++ +L++
Sbjct: 246 --EAMQLFCRMSKKDAVAWAVVISGFTQNGLPDESMRVFKCMLFGGPFPDAVTMVKVLAA 303

Query: 343 CTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSW 402
           C+    +     +H Y++  G    + +  AL+++YSKCG++  + ++F     +D V W
Sbjct: 304 CSESGVMRQAFCLHGYLVITGFCDKIFVAAALVDLYSKCGNLGCAVRVFESAMEKDVVLW 363

Query: 403 TTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462
           +++ISGYG HG G++A++LF  M  S V+P+++T +++LSAC+H+GLV+E + +F ++ +
Sbjct: 364 SSMISGYGVHGLGQQAVELFQMMVASSVKPNSLTFVSVLSACSHSGLVQEGKRIFESMTQ 423

Query: 463 EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAE 522
              +     H++  VDLLG++G++++A K++     +       +L++ACR H   E++E
Sbjct: 424 VYGVVPNAVHHSAMVDLLGRAGELQEAAKLLHGNG-RADAHTWCALLAACRAHHDTEMSE 482

Query: 523 MLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           ++A +L++ +P++A  Y LL+ + +   NW  A+E   ++R +GL+K  G S +E
Sbjct: 483 VVAAKLLKLDPDHAGYYNLLNNIYTFDENWSSAKENRNIIRDRGLNKVPGCSAVE 537


>gi|449482566|ref|XP_004156326.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g03800-like [Cucumis sativus]
          Length = 908

 Score =  288 bits (736), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 175/585 (29%), Positives = 309/585 (52%), Gaps = 38/585 (6%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           SG+  N     +++ AC     +Q  G Q+H   +K G  +   I N+L+ +Y K    +
Sbjct: 190 SGIEPNEYTFVAILTACIRNMDYQ-LGSQVHGIVVKLGLLSCVFICNALMGLYCKCGFLD 248

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC-GFVLKAELLAGIISLC 139
              +LF+EMP RD  SWN++I+   +   Y  + + FR M LC G  +    L+ +++ C
Sbjct: 249 LVLRLFEEMPERDITSWNTVISSLVKEFKYDEAFDYFRGMQLCKGLKVDHFSLSTLLTAC 308

Query: 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSW 199
           +   +   G+Q+HAL +  G  E  + VS++L+  Y+KC        +FE M IR+ ++W
Sbjct: 309 AGSVKPMKGQQLHALALKVG-LESHLSVSSSLIGFYTKCGSANDVTDLFETMPIRDVITW 367

Query: 200 TAMISGCIDSQNYDTGIDLFRAMQR-------------------------------EGVK 228
           T MI+  ++    D+ +++F  M +                               EGV+
Sbjct: 368 TGMITSYMEFGMLDSAVEVFNKMPKRNCISYNAVLAGLSRNDDGSRALELFIEMLEEGVE 427

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
            +  TLT ++ AC  L+  +  + I G+    G   +  +  AL+ MY  C       +I
Sbjct: 428 ISDCTLTSIITACGLLKSFKVSQQIQGFVMKFGILSNSCIETALVDMYTRCGRMEDAEKI 487

Query: 289 IFERTKVKD-VVIWSSIIRGYSQSGDLSEAMKLFSRMRLE-RIEPNSVTLLAILSSCTRQ 346
            ++R+   D   + +S+I GY+++G L+EA+ LF   + E  I  + V   +ILS C   
Sbjct: 488 FYQRSLENDYTAMLTSMICGYARNGKLNEAISLFHSGQSEGAIVMDEVMSTSILSLCGSI 547

Query: 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLI 406
            F   G+ +HC+ +K+GL  +  +GNA ++MYSKC ++  + ++FN M  +D VSW  L+
Sbjct: 548 GFHEMGMQMHCHALKSGLITETGVGNATVSMYSKCWNMDDAVRVFNTMNMQDIVSWNGLV 607

Query: 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHA--GLVKEAETLFNNVMKEK 464
           +G+  H  G++AL ++ +M+++G++PD+IT   I+SA  H    LV    +LF ++  E 
Sbjct: 608 AGHVLHWQGDKALGIWKKMEKAGIKPDSITFALIISAYKHTELNLVDSCRSLFVSMETEH 667

Query: 465 KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEML 524
            I   +EHYA ++ +LG+ G +E+A + +  MP++P   +  +L+++CRI+    + ++ 
Sbjct: 668 NIKPTLEHYASFISVLGRWGLLEEAEQTIRNMPLEPDVYVWRALLNSCRINKNERLEKLA 727

Query: 525 AHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSK 569
           A  ++  EP++  +Y L S + S SG W  +E+V   MR KG  K
Sbjct: 728 ARNILAVEPKDPLSYILKSNLYSASGRWYYSEKVREDMREKGFRK 772



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 126/475 (26%), Positives = 224/475 (47%), Gaps = 38/475 (8%)

Query: 60  DADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFRE 119
           + D  + N+LIS Y K      A ++F  +   + +S+ ++I+ F+++ +   ++E+F  
Sbjct: 127 EEDIFLGNALISAYLKLGLVRDADKVFSGLSCPNVVSYTALISGFSKSDWEDEAVELFFA 186

Query: 120 MYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH 179
           M   G          I++ C +  + +LG Q+H +V+  G     VF+  AL+ LY KC 
Sbjct: 187 MLDSGIEPNEYTFVAILTACIRNMDYQLGSQVHGIVVKLGLLS-CVFICNALMGLYCKCG 245

Query: 180 HWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR-EGVKPTRVTLTIVL 238
              + LR+FE+M  R+  SW  +IS  +    YD   D FR MQ  +G+K    +L+ +L
Sbjct: 246 FLDLVLRLFEEMPERDITSWNTVISSLVKEFKYDEAFDYFRGMQLCKGLKVDHFSLSTLL 305

Query: 239 LACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDV 298
            ACA       G+ +H  A   G +    +S++L+  Y +C  A +    +FE   ++DV
Sbjct: 306 TACAGSVKPMKGQQLHALALKVGLESHLSVSSSLIGFYTKCGSA-NDVTDLFETMPIRDV 364

Query: 299 VIWSSIIRGY-------------------------------SQSGDLSEAMKLFSRMRLE 327
           + W+ +I  Y                               S++ D S A++LF  M  E
Sbjct: 365 ITWTGMITSYMEFGMLDSAVEVFNKMPKRNCISYNAVLAGLSRNDDGSRALELFIEMLEE 424

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
            +E +  TL +I+++C           +  ++MK G+  +  I  AL++MY++CG +  +
Sbjct: 425 GVEISDCTLTSIITACGLLKSFKVSQQIQGFVMKFGILSNSCIETALVDMYTRCGRMEDA 484

Query: 388 HQIFNEMA-ARDFVSW-TTLISGYGFHGYGEEALQLFLEMQESG-VEPDAITVLAILSAC 444
            +IF + +   D+ +  T++I GY  +G   EA+ LF   Q  G +  D +   +ILS C
Sbjct: 485 EKIFYQRSLENDYTAMLTSMICGYARNGKLNEAISLFHSGQSEGAIVMDEVMSTSILSLC 544

Query: 445 NHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
              G  +    +  + +K   I       A  V +  K   ++DA +V +TM M+
Sbjct: 545 GSIGFHEMGMQMHCHALKSGLITETGVGNAT-VSMYSKCWNMDDAVRVFNTMNMQ 598



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 116/425 (27%), Positives = 195/425 (45%), Gaps = 38/425 (8%)

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           ++ L ++ G+ +L R +HA  +     E  +F+  AL+  Y K      A +VF  +   
Sbjct: 103 LLRLSTRYGDPDLARAVHAQFL---KLEEDIFLGNALISAYLKLGLVRDADKVFSGLSCP 159

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
           N VS+TA+ISG   S   D  ++LF AM   G++P   T   +L AC    D + G  +H
Sbjct: 160 NVVSYTALISGFSKSDWEDEAVELFFAMLDSGIEPNEYTFVAILTACIRNMDYQLGSQVH 219

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
           G     G      +  ALM +YC+C   L     +FE    +D+  W+++I    +    
Sbjct: 220 GIVVKLGLLSCVFICNALMGLYCKCG-FLDLVLRLFEEMPERDITSWNTVISSLVKEFKY 278

Query: 315 SEAMKLFSRMRL-ERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNA 373
            EA   F  M+L + ++ +  +L  +L++C        G  +H   +K GL   +S+ ++
Sbjct: 279 DEAFDYFRGMQLCKGLKVDHFSLSTLLTACAGSVKPMKGQQLHALALKVGLESHLSVSSS 338

Query: 374 LMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGY------------------- 414
           L+  Y+KCGS      +F  M  RD ++WT +I+ Y   G                    
Sbjct: 339 LIGFYTKCGSANDVTDLFETMPIRDVITWTGMITSYMEFGMLDSAVEVFNKMPKRNCISY 398

Query: 415 ------------GEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462
                       G  AL+LF+EM E GVE    T+ +I++AC      K ++ +   VMK
Sbjct: 399 NAVLAGLSRNDDGSRALELFIEMLEEGVEISDCTLTSIITACGLLKSFKVSQQIQGFVMK 458

Query: 463 EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPS-TRILSSLVSACRIHGRLEVA 521
              ++ +    A  VD+  + G++EDA K+     ++   T +L+S++     +G+L  A
Sbjct: 459 FGILSNSCIETA-LVDMYTRCGRMEDAEKIFYQRSLENDYTAMLTSMICGYARNGKLNEA 517

Query: 522 EMLAH 526
             L H
Sbjct: 518 ISLFH 522


>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 818

 Score =  288 bits (736), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 176/556 (31%), Positives = 301/556 (54%), Gaps = 17/556 (3%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGS-DADPVISNSLISMYAKFSKPESAYQ 84
           N   L +  +AC   +  +  G  +    LK+G    D  +  +LI M+A+     +A +
Sbjct: 142 NAFTLCAAARACFPQELFRLAGGVVLGFVLKTGFWGTDVSVGCALIDMFARNGDLVAAQR 201

Query: 85  LFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGE 144
           +FD +  R ++ W  +I  + Q G   + +E+F  M   GF      ++ +IS C+++G 
Sbjct: 202 VFDGLIERTSVVWTLLITRYVQAGCASKVVELFLHMLDDGFEPDGYSMSSMISACTELGS 261

Query: 145 LELGRQIHALVIVDGSFELSVFVSTALLDLYSKC---HHWLIALRVFEQMVIRNEVSWTA 201
           + LG+Q+H++ +  G    S  VS  L+D+Y+K         A +VF+ M   N +SWTA
Sbjct: 262 VRLGQQLHSVALRLGLVSDSC-VSCGLVDMYAKLKMERSMEHARKVFKTMPRHNVMSWTA 320

Query: 202 MISGCIDSQNYDTGI-DLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
           +ISG + S   +  +  LFR M  E ++P  +T + +L ACA L D  +G+ IH +    
Sbjct: 321 LISGYVQSGVQENNVMALFREMLNESIRPNHITYSNLLKACANLSDQDSGRQIHAHVLKT 380

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
                + +  AL+ MY E +  +  AR  F++    +++  S  +     +   S     
Sbjct: 381 SIAHVNVVGNALVSMYAE-SGCMEEARKAFDQLYETNILSMSPDVETERNNASCSS---- 435

Query: 321 FSRMRLERIEP--NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMY 378
               ++E ++   ++ T  ++LS+      L+ G  +H   MKAG   D  I N+L++MY
Sbjct: 436 ----KIEGMDDGVSTFTFASLLSAAASVGLLTKGQKLHALSMKAGFRSDQGISNSLVSMY 491

Query: 379 SKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
           ++CG +  + + F+EM   + +SWT++ISG   HGY ++AL +F +M  +GV+P+ +T +
Sbjct: 492 ARCGYLEDACRAFDEMKDHNVISWTSIISGLAKHGYAKQALSMFHDMILAGVKPNDVTYI 551

Query: 439 AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPM 498
           A+LSAC+H GLVKE +  F ++ K+  +   +EHYAC VDLL +SG +E+A + ++ MP 
Sbjct: 552 AVLSACSHVGLVKEGKEHFRSMQKDHGLLPRMEHYACIVDLLARSGLVEEARQFINEMPC 611

Query: 499 KPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEV 558
           K    +  +L+SACR +G  E+ E+ A+ +I  EP + A Y LLS + +++G W     +
Sbjct: 612 KADALVWKTLLSACRTYGNTEIGEIAANHVINLEPRDPAPYVLLSNLYADAGLWDEVARI 671

Query: 559 WRVMRAKGLSKSYGFS 574
             +MR K LSK  G S
Sbjct: 672 RSLMRDKNLSKETGLS 687



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 145/532 (27%), Positives = 254/532 (47%), Gaps = 29/532 (5%)

Query: 46  FGLQLHCTALKSGS-DADPVISNSLISMYAKFSKPESAYQLFDEM-PYRDTISWNSIINC 103
            G  LH   L+S   D D V++NSL++MY+K    E+A ++FD+M   RD +SW ++ +C
Sbjct: 58  LGRALHRRLLRSEILDTDAVVANSLLTMYSKCGAVEAARRVFDQMCGVRDLVSWTAMASC 117

Query: 104 FTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELEL-GRQIHALVIVDGSFE 162
             +NG    SL +  EM   G    A  L      C       L G  +   V+  G + 
Sbjct: 118 LARNGAERESLRLLGEMLELGLRPNAFTLCAAARACFPQELFRLAGGVVLGFVLKTGFWG 177

Query: 163 LSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM 222
             V V  AL+D++++    + A RVF+ ++ R  V WT +I+  + +      ++LF  M
Sbjct: 178 TDVSVGCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYVQAGCASKVVELFLHM 237

Query: 223 QREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECT-- 280
             +G +P   +++ ++ AC EL  +R G+ +H  A   G   D  +S  L+ MY +    
Sbjct: 238 LDDGFEPDGYSMSSMISACTELGSVRLGQQLHSVALRLGLVSDSCVSCGLVDMYAKLKME 297

Query: 281 EALHPARIIFERTKVKDVVIWSSIIRGYSQSG-DLSEAMKLFSRMRLERIEPNSVTLLAI 339
            ++  AR +F+     +V+ W+++I GY QSG   +  M LF  M  E I PN +T   +
Sbjct: 298 RSMEHARKVFKTMPRHNVMSWTALISGYVQSGVQENNVMALFREMLNESIRPNHITYSNL 357

Query: 340 LSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDF 399
           L +C   S    G  +H +++K  +     +GNAL++MY++ G +  + + F+++   + 
Sbjct: 358 LKACANLSDQDSGRQIHAHVLKTSIAHVNVVGNALVSMYAESGCMEEARKAFDQLYETNI 417

Query: 400 VSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNN 459
           +S +  +           +    +E  + GV     T  ++LSA    GL+ + + L   
Sbjct: 418 LSMSPDVETE----RNNASCSSKIEGMDDGVS--TFTFASLLSAAASVGLLTKGQKLHAL 471

Query: 460 VMK-----EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRI-LSSLVSACR 513
            MK     ++ I+ ++      V +  + G +EDAC+      MK    I  +S++S   
Sbjct: 472 SMKAGFRSDQGISNSL------VSMYARCGYLEDACRAFD--EMKDHNVISWTSIISGLA 523

Query: 514 IHGRLEVAEMLAHQLIEA--EPENAANYTLLSMVCSESGNWLGAEEVWRVMR 563
            HG  + A  + H +I A  +P +     +LS  CS  G     +E +R M+
Sbjct: 524 KHGYAKQALSMFHDMILAGVKPNDVTYIAVLS-ACSHVGLVKEGKEHFRSMQ 574



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 105/369 (28%), Positives = 177/369 (47%), Gaps = 15/369 (4%)

Query: 133 AGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV 192
           A +++  ++ G+L LGR +H  ++     +    V+ +LL +YSKC     A RVF+QM 
Sbjct: 44  AKLLTSAARAGDLRLGRALHRRLLRSEILDTDAVVANSLLTMYSKCGAVEAARRVFDQMC 103

Query: 193 -IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR-NG 250
            +R+ VSWTAM S    +      + L   M   G++P   TL     AC      R  G
Sbjct: 104 GVRDLVSWTAMASCLARNGAERESLRLLGEMLELGLRPNAFTLCAAARACFPQELFRLAG 163

Query: 251 KAIHGYAYCCGF-DFDHHLSAALMHMYCECTEALHPARI---IFERTKVKDVVIWSSIIR 306
             + G+    GF   D  +  AL+ M+    + +   R+   + ERT     V+W+ +I 
Sbjct: 164 GVVLGFVLKTGFWGTDVSVGCALIDMFARNGDLVAAQRVFDGLIERTS----VVWTLLIT 219

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
            Y Q+G  S+ ++LF  M  +  EP+  ++ +++S+CT    +  G  +H   ++ GL  
Sbjct: 220 RYVQAGCASKVVELFLHMLDDGFEPDGYSMSSMISACTELGSVRLGQQLHSVALRLGLVS 279

Query: 367 DVSIGNALMNMYSKCG---SITSSHQIFNEMAARDFVSWTTLISGYGFHGYGE-EALQLF 422
           D  +   L++MY+K     S+  + ++F  M   + +SWT LISGY   G  E   + LF
Sbjct: 280 DSCVSCGLVDMYAKLKMERSMEHARKVFKTMPRHNVMSWTALISGYVQSGVQENNVMALF 339

Query: 423 LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGK 482
            EM    + P+ IT   +L AC +         +  +V+K     + +   A  V +  +
Sbjct: 340 REMLNESIRPNHITYSNLLKACANLSDQDSGRQIHAHVLKTSIAHVNVVGNA-LVSMYAE 398

Query: 483 SGKIEDACK 491
           SG +E+A K
Sbjct: 399 SGCMEEARK 407



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 142/272 (52%), Gaps = 17/272 (6%)

Query: 237 VLLACAELRDLRNGKAIHGYAYCCG-FDFDHHLSAALMHMYCECTEALHPARIIFERT-K 294
           +L + A   DLR G+A+H         D D  ++ +L+ MY +C  A+  AR +F++   
Sbjct: 46  LLTSAARAGDLRLGRALHRRLLRSEILDTDAVVANSLLTMYSKCG-AVEAARRVFDQMCG 104

Query: 295 VKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG 354
           V+D+V W+++    +++G   E+++L   M    + PN+ TL A   +C  Q       G
Sbjct: 105 VRDLVSWTAMASCLARNGAERESLRLLGEMLELGLRPNAFTLCAAARACFPQELFRLAGG 164

Query: 355 VHC-YIMKAGL-NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFH 412
           V   +++K G    DVS+G AL++M+++ G + ++ ++F+ +  R  V WT LI+ Y   
Sbjct: 165 VVLGFVLKTGFWGTDVSVGCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYVQA 224

Query: 413 GYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEH 472
           G   + ++LFL M + G EPD  ++ +++SAC   G V+  + L +  ++     L +  
Sbjct: 225 GCASKVVELFLHMLDDGFEPDGYSMSSMISACTELGSVRLGQQLHSVALR-----LGLVS 279

Query: 473 YACY----VDLLGK---SGKIEDACKVVSTMP 497
            +C     VD+  K      +E A KV  TMP
Sbjct: 280 DSCVSCGLVDMYAKLKMERSMEHARKVFKTMP 311


>gi|296084064|emb|CBI24452.3| unnamed protein product [Vitis vinifera]
          Length = 503

 Score =  288 bits (736), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 146/435 (33%), Positives = 252/435 (57%), Gaps = 9/435 (2%)

Query: 149 RQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI--ALRVFEQMVIRNEVSWTAMISGC 206
           + IHA +I+ G FE + F+   L+  Y++C+   I  A +VF+ +  R+   W  +I G 
Sbjct: 24  KSIHAQIII-GGFEENPFLGAKLVGKYAQCYESNIEDARKVFDCLPDRDVFVWNTIIQGY 82

Query: 207 IDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDH 266
            +   +   ++++  M+  GV   R T   VL AC  ++D + G+AIHG+    G D D 
Sbjct: 83  ANLGPFMEALNIYEYMRCSGVAANRYTFPFVLKACGAMKDGKKGQAIHGHVVKHGLDLDL 142

Query: 267 HLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRL 326
            +  AL+  Y +C E +  +R +F+    KD+V W+S+I GY+ +G   +A+ LF  M  
Sbjct: 143 FVGNALVAFYAKCNE-IGASRRVFDMISEKDIVTWNSMISGYAINGCADDALVLFHNMLQ 201

Query: 327 ERIE----PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCG 382
            + +    P+S TL+AIL +C + + +  GL +H Y++K+G+  D ++G+ L+ MY+ CG
Sbjct: 202 VQGDTVYAPDSATLVAILPACAQAAAIQEGLWIHSYVIKSGIELDAALGSGLIAMYANCG 261

Query: 383 SITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILS 442
            + S+  +F+ +  ++ V W  +I  YG HG+ +EAL++F  + +SG+ PD +  L +LS
Sbjct: 262 LLNSARDVFDRIDDKNIVVWNAIIRCYGMHGHADEALKMFSGLIDSGLHPDGVIFLCLLS 321

Query: 443 ACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPST 502
           A +HAG+V E   LF   M +  +  + EHYA  VD+LG++G + +A + V  MP++P  
Sbjct: 322 AFSHAGMVAEGMELFEK-MGDYGVEKSSEHYASVVDILGRAGFLHEAVEFVKNMPVQPGK 380

Query: 503 RILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVM 562
            +  +L+ ACRIH  +E+AE +A +L   +P+NA  Y +L  +  ++G W  A  + + +
Sbjct: 381 DVYGALLGACRIHNNIELAEEIAEKLFVLDPDNAGRYIILVKMYEDAGKWENAARLRKAL 440

Query: 563 RAKGLSKSYGFSRIE 577
           + K + K  G S IE
Sbjct: 441 KEKNIRKPLGCSAIE 455



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 128/478 (26%), Positives = 217/478 (45%), Gaps = 54/478 (11%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKF--SKPESAYQLFDEMPYRDTISWNSIINCFTQN 107
           +H   +  G + +P +   L+  YA+   S  E A ++FD +P RD   WN+II  +   
Sbjct: 26  IHAQIIIGGFEENPFLGAKLVGKYAQCYESNIEDARKVFDCLPDRDVFVWNTIIQGYANL 85

Query: 108 GFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFV 167
           G ++ +L ++  M   G          ++  C  + + + G+ IH  V+  G  +L +FV
Sbjct: 86  GPFMEALNIYEYMRCSGVAANRYTFPFVLKACGAMKDGKKGQAIHGHVVKHG-LDLDLFV 144

Query: 168 STALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM-QREG 226
             AL+  Y+KC+    + RVF+ +  ++ V+W +MISG   +   D  + LF  M Q +G
Sbjct: 145 GNALVAFYAKCNEIGASRRVFDMISEKDIVTWNSMISGYAINGCADDALVLFHNMLQVQG 204

Query: 227 ---VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEAL 283
                P   TL  +L ACA+   ++ G  IH Y    G + D  L + L+ MY  C   L
Sbjct: 205 DTVYAPDSATLVAILPACAQAAAIQEGLWIHSYVIKSGIELDAALGSGLIAMYANCG-LL 263

Query: 284 HPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC 343
           + AR +F+R   K++V+W++IIR Y   G   EA+K+FS +    + P+ V  L +LS+ 
Sbjct: 264 NSARDVFDRIDDKNIVVWNAIIRCYGMHGHADEALKMFSGLIDSGLHPDGVIFLCLLSAF 323

Query: 344 TRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWT 403
           +    ++ G                      M ++ K G          E ++  + S  
Sbjct: 324 SHAGMVAEG----------------------MELFEKMGDYGV------EKSSEHYASVV 355

Query: 404 TLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC---NHAGLVKE-AETLFNN 459
            ++   G  G+  EA++    M    V+P      A+L AC   N+  L +E AE LF  
Sbjct: 356 DIL---GRAGFLHEAVEFVKNMP---VQPGKDVYGALLGACRIHNNIELAEEIAEKLF-- 407

Query: 460 VMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRIL--SSLVSACRIH 515
           V+           Y   V +   +GK E+A ++   +  K   + L  S++   C +H
Sbjct: 408 VLDPDNAG----RYIILVKMYEDAGKWENAARLRKALKEKNIRKPLGCSAIELGCVLH 461



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 117/238 (49%), Gaps = 7/238 (2%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           + + L++Y + +  SG+ +N    P V+KAC  A      G  +H   +K G D D  + 
Sbjct: 88  FMEALNIY-EYMRCSGVAANRYTFPFVLKACG-AMKDGKKGQAIHGHVVKHGLDLDLFVG 145

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG-- 124
           N+L++ YAK ++  ++ ++FD +  +D ++WNS+I+ +  NG    +L +F  M      
Sbjct: 146 NALVAFYAKCNEIGASRRVFDMISEKDIVTWNSMISGYAINGCADDALVLFHNMLQVQGD 205

Query: 125 --FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL 182
             +   +  L  I+  C+Q   ++ G  IH+ VI  G  EL   + + L+ +Y+ C    
Sbjct: 206 TVYAPDSATLVAILPACAQAAAIQEGLWIHSYVIKSG-IELDAALGSGLIAMYANCGLLN 264

Query: 183 IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
            A  VF+++  +N V W A+I       + D  + +F  +   G+ P  V    +L A
Sbjct: 265 SARDVFDRIDDKNIVVWNAIIRCYGMHGHADEALKMFSGLIDSGLHPDGVIFLCLLSA 322


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  288 bits (736), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 162/486 (33%), Positives = 271/486 (55%), Gaps = 9/486 (1%)

Query: 98  NSIINCFTQNGFYVRSLEMFREMYLCGFVLKAEL----LAGIISLCSQIGELELGRQIHA 153
           N+ +  F++ GF V+S ++ +E    G V  +E      A  +  C Q  E   G+ +H 
Sbjct: 5   NNFLIQFSRRGFSVQSAKLTQE--FVGHVSPSEFNSHAYANALQDCIQKDEPSRGKGLHC 62

Query: 154 LVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYD 213
            ++  G   L +F    LL++Y K      A ++F++M  RN +S+  +I G  +S  + 
Sbjct: 63  EILKRGGC-LDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFL 121

Query: 214 TGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALM 273
             I+LF  + RE V P + T   VL ACA +  L  G  IH +    G   D  +S ALM
Sbjct: 122 EAIELFVRLHRE-VLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALM 180

Query: 274 HMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNS 333
            +Y +C   +  +  +F  +  ++ V W+++I G+ Q GD  +A++LF  M   R++   
Sbjct: 181 DVYAKCGR-MENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATE 239

Query: 334 VTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNE 393
           VT  + L +C   + L  GL +H   +K   + D+ + NAL++MY+KCGSI  +  +F+ 
Sbjct: 240 VTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDL 299

Query: 394 MAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEA 453
           M  +D VSW  +ISGY  HG G EAL++F +MQE+ V+PD +T + +LSAC +AGL+ + 
Sbjct: 300 MNKQDEVSWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQG 359

Query: 454 ETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACR 513
           +  F +++++  I   IEHY C V LLG+ G ++ A K++  +P +PS  +  +L+ AC 
Sbjct: 360 QAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACV 419

Query: 514 IHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGF 573
           IH  +E+  + A +++E EP++ A + LLS + + +  W     V + M+ KG+ K  G 
Sbjct: 420 IHNDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGL 479

Query: 574 SRIENE 579
           S IE++
Sbjct: 480 SWIESQ 485



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 123/413 (29%), Positives = 201/413 (48%), Gaps = 24/413 (5%)

Query: 31  PSVIKACAYAQTHQH--------FGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESA 82
           PS   + AYA   Q          G  LHC  LK G   D    N L++MY K      A
Sbjct: 33  PSEFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDA 92

Query: 83  YQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMF----REMYLCGFVLKAELLAGIISL 138
            +LFDEMP R+TIS+ ++I  + ++  ++ ++E+F    RE+    F       A ++  
Sbjct: 93  SKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREVLPNQFT-----FASVLQA 147

Query: 139 CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
           C+ +  L LG QIH  VI  G     VFVS AL+D+Y+KC     ++ +F +   RN+V+
Sbjct: 148 CATMEGLNLGNQIHCHVIKIG-LHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVT 206

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258
           W  +I G +   + +  + LF  M    V+ T VT +  L ACA L  L  G  IH    
Sbjct: 207 WNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTV 266

Query: 259 CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAM 318
              FD D  ++ AL+ MY +C  ++  AR++F+    +D V W+++I GYS  G   EA+
Sbjct: 267 KTTFDKDIVVTNALIDMYAKCG-SIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREAL 325

Query: 319 KLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHC-YIMKAGLNFDVSIGNALMNM 377
           ++F +M+   ++P+ +T + +LS+C     L  G       I   G+   +     ++ +
Sbjct: 326 RIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWL 385

Query: 378 YSKCGSITSSHQIFNEMAARDFV-SWTTLISGYGFHG---YGEEALQLFLEMQ 426
             + G +  + ++ +E+  +  V  W  L+     H     G  + Q  LEM+
Sbjct: 386 LGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEME 438



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 83/252 (32%), Positives = 128/252 (50%), Gaps = 7/252 (2%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           N     SV++ACA  +   + G Q+HC  +K G  +D  +SN+L+ +YAK  + E++ +L
Sbjct: 137 NQFTFASVLQACATMEG-LNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMEL 195

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL 145
           F E P+R+ ++WN++I    Q G   ++L +F  M            +  +  C+ +  L
Sbjct: 196 FAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAAL 255

Query: 146 ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISG 205
           E G QIH+L  V  +F+  + V+ AL+D+Y+KC     A  VF+ M  ++EVSW AMISG
Sbjct: 256 EPGLQIHSLT-VKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISG 314

Query: 206 CIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFD 265
                     + +F  MQ   VKP ++T   VL ACA       G    G AY      D
Sbjct: 315 YSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANA-----GLLDQGQAYFTSMIQD 369

Query: 266 HHLSAALMHMYC 277
           H +   + H  C
Sbjct: 370 HGIEPCIEHYTC 381


>gi|302796918|ref|XP_002980220.1| hypothetical protein SELMODRAFT_112433 [Selaginella moellendorffii]
 gi|300151836|gb|EFJ18480.1| hypothetical protein SELMODRAFT_112433 [Selaginella moellendorffii]
          Length = 739

 Score =  288 bits (736), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 156/477 (32%), Positives = 263/477 (55%), Gaps = 14/477 (2%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           +LHC  +  G DAD  + N+L+ +Y KF   + A+  FD +  ++  SW  +I+ F QNG
Sbjct: 55  ELHCRMIAQGLDADTYLGNNLVRVYGKFGGLDRAWAAFDRIAAKNVFSWTIVISAFAQNG 114

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
            +  +L +FR+M   G       LA ++ +CS I +L  GR IH  VI   + +  V + 
Sbjct: 115 HHREALVLFRQMEREGVKANEVTLAAVLGICSSIKDLAGGRSIHGRVI---AAKKDVVIG 171

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
            AL+++YSKC     A   F++MV+R+ VSWT MI+   +   ++  +++F  M  E V 
Sbjct: 172 NALVNMYSKCGSLREARASFQEMVVRDVVSWTTMITALSEHGEWNEAVEIFWEMVSENVA 231

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAA--LMHMYCECTEALHPA 286
           P  ++   VL AC+ L D    + IH +    G + D  L  A  L+H Y  C      A
Sbjct: 232 PNEISCLAVLGACSNLGDRSQVRVIHEFIASGGLELDKKLVVANTLIHTYGRCGSP-SDA 290

Query: 287 RIIFERTK--VKDVVIWSSIIRGYSQSGDLSEAMKLFSRM--RLERIEPNSVTLLAILSS 342
           R +F+  +   ++ V W+S+I  Y+ +      ++L+  M  R E  + + V  L +L +
Sbjct: 291 RRVFDSLQHSARNAVSWASMIAAYTSNEQAKAGVELYQEMIQREESKKMDPVAYLCVLEA 350

Query: 343 CTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSW 402
           C+  S L  G  VH  I+ AG   ++ +  A++NMY KCGS+  + ++F+ M AR+ ++W
Sbjct: 351 CSSLSALKVGRQVHEEIVAAGFGDELPLAGAIVNMYCKCGSLVEAREVFDGMKARNMIAW 410

Query: 403 TTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462
            +++ GY  HG+ + ALQLF      GV PD IT + IL+AC+HAG+VK     F ++  
Sbjct: 411 NSMMGGYTQHGHPKRALQLFELACLDGVLPDEITFVTILTACSHAGMVKPGVWHFGSIRA 470

Query: 463 EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPM--KPSTRILS--SLVSACRIH 515
           +  +  +++HY C VD+LG++G ++ A ++V  MP    P+   +   +L+++C++H
Sbjct: 471 DFGMEPSVDHYVCMVDMLGRAGWLDAAERLVERMPAFSNPADEFVPWMALLASCKVH 527



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 86/179 (48%), Gaps = 6/179 (3%)

Query: 33  VIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYR 92
           V++AC+     +  G Q+H   + +G   +  ++ ++++MY K      A ++FD M  R
Sbjct: 347 VLEACSSLSALK-VGRQVHEEIVAAGFGDELPLAGAIVNMYCKCGSLVEAREVFDGMKAR 405

Query: 93  DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIH 152
           + I+WNS++  +TQ+G   R+L++F    L G +        I++ CS  G ++ G    
Sbjct: 406 NMIAWNSMMGGYTQHGHPKRALQLFELACLDGVLPDEITFVTILTACSHAGMVKPGVWHF 465

Query: 153 ALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNE-----VSWTAMISGC 206
             +  D   E SV     ++D+  +      A R+ E+M   +      V W A+++ C
Sbjct: 466 GSIRADFGMEPSVDHYVCMVDMLGRAGWLDAAERLVERMPAFSNPADEFVPWMALLASC 524


>gi|357165628|ref|XP_003580444.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Brachypodium distachyon]
          Length = 779

 Score =  288 bits (736), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 168/524 (32%), Positives = 291/524 (55%), Gaps = 9/524 (1%)

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFRE- 119
           +D  + +S I+M+++    +SA  +FD    ++   WN++I  + QNG +  ++++F + 
Sbjct: 242 SDLFVVSSAIAMFSEIGDVQSARMVFDHAAKKNIEVWNTMITGYVQNGQFSEAMDLFIQI 301

Query: 120 MYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH 179
           M   G  L        I+  SQ  + +LG+Q+H  ++      L V +  AL+ +YS+C 
Sbjct: 302 MGSKGVPLDVVTFLSAITAASQSQDGKLGQQLHGYLMKGMRSTLPVILGNALVVMYSRCG 361

Query: 180 HWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLL 239
           +   A  +F+Q+  ++ VSW  M++  + +     G+ L   M + G     VTLT VL 
Sbjct: 362 NVHAAFDLFDQLPEKDIVSWNTMVTAFVQNDFDFEGLLLVYQMHKSGFVADAVTLTAVLS 421

Query: 240 ACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVV 299
           A +   DL+ GK  HGY    G +    L + L++MY +        R+       +D V
Sbjct: 422 AASNTGDLQIGKQSHGYLIRHGIE-GEGLESYLINMYSKSGHIDMAQRVFDGYGNDRDEV 480

Query: 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR-QSFLSHGLGVHCY 358
            W+++I GY+QSG   +A+  F  M    +EP SVTL ++L +C      +  G  +H +
Sbjct: 481 TWNAMIAGYTQSGQPEQAVLAFRAMVEAGVEPTSVTLASVLPACEPVGEGVQAGKQIHSF 540

Query: 359 IMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEA 418
            ++  L+ ++ +G AL++MYSKCG IT++  +F+ M  +  V++TT+ISG G HG+G+ A
Sbjct: 541 ALRHSLDTNIFVGTALVDMYSKCGEITAAENVFDRMTEKSTVTYTTMISGLGQHGFGDRA 600

Query: 419 LQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVD 478
           L LF  MQ++G++PDA+T LA +SACN++GLV E  +L+ + M+   ++   +H+ C VD
Sbjct: 601 LFLFYSMQDNGLKPDAVTFLAAISACNYSGLVDEGLSLYRS-METFGLSATPQHHCCIVD 659

Query: 479 LLGKSGKIEDACKVVSTMPMKPS-TRILSSLVSACRIHGRLEVAEMLAHQLIEAEPE--- 534
           LL K+G++E+A   V ++    +   I  SL+++C+  G+ E+   +  +L+  E +   
Sbjct: 660 LLAKAGRVEEAYDFVESLGEDGNFIAIWGSLLASCKAQGKQELTAFVTDKLLNIEKQYGH 719

Query: 535 -NAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            +A    LLS + +  GNW  A+ + R MR +GL K  G S I+
Sbjct: 720 AHAGYNVLLSQLFAAEGNWSSADSLRREMRVRGLRKDVGSSWIK 763



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 134/517 (25%), Positives = 243/517 (47%), Gaps = 14/517 (2%)

Query: 64  VISNSLISMYAKFSK-----PESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFR 118
           V+ NSL+++YA  ++      +   +LFD  P R+ +SWN+++  + + G    +LEMF 
Sbjct: 138 VLRNSLLNLYASCARYRHGGVDVVRRLFDATPKRNVVSWNTLVGWYVKTGRPYEALEMFM 197

Query: 119 EMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDG-SFELSVFVSTALLDLYSK 177
            M   G          +    +   +      ++ ++I  G  +   +FV ++ + ++S+
Sbjct: 198 RMLEDGIRPTPVSFVNVFPAAAS-DDPSWPFFLYGMLIKHGVEYVSDLFVVSSAIAMFSE 256

Query: 178 CHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLF-RAMQREGVKPTRVTLTI 236
                 A  VF+    +N   W  MI+G + +  +   +DLF + M  +GV    VT   
Sbjct: 257 IGDVQSARMVFDHAAKKNIEVWNTMITGYVQNGQFSEAMDLFIQIMGSKGVPLDVVTFLS 316

Query: 237 VLLACAELRDLRNGKAIHGY-AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV 295
            + A ++ +D + G+ +HGY            L  AL+ MY  C   +H A  +F++   
Sbjct: 317 AITAASQSQDGKLGQQLHGYLMKGMRSTLPVILGNALVVMYSRCGN-VHAAFDLFDQLPE 375

Query: 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV 355
           KD+V W++++  + Q+    E + L  +M       ++VTL A+LS+ +    L  G   
Sbjct: 376 KDIVSWNTMVTAFVQNDFDFEGLLLVYQMHKSGFVADAVTLTAVLSAASNTGDLQIGKQS 435

Query: 356 HCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA-ARDFVSWTTLISGYGFHGY 414
           H Y+++ G+  +  + + L+NMYSK G I  + ++F+     RD V+W  +I+GY   G 
Sbjct: 436 HGYLIRHGIEGE-GLESYLINMYSKSGHIDMAQRVFDGYGNDRDEVTWNAMIAGYTQSGQ 494

Query: 415 GEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYA 474
            E+A+  F  M E+GVEP ++T+ ++L AC   G   +A    ++      +   I    
Sbjct: 495 PEQAVLAFRAMVEAGVEPTSVTLASVLPACEPVGEGVQAGKQIHSFALRHSLDTNIFVGT 554

Query: 475 CYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE-AEP 533
             VD+  K G+I  A  V   M  K ST   ++++S    HG  + A  L + + +    
Sbjct: 555 ALVDMYSKCGEITAAENVFDRMTEK-STVTYTTMISGLGQHGFGDRALFLFYSMQDNGLK 613

Query: 534 ENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKS 570
            +A  +      C+ SG       ++R M   GLS +
Sbjct: 614 PDAVTFLAAISACNYSGLVDEGLSLYRSMETFGLSAT 650



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 143/303 (47%), Gaps = 21/303 (6%)

Query: 213 DTGIDLFRAMQREGVKPTR---VTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH-- 267
           D  + L+  +      P R    T +  L ACA  R LR G+++H +             
Sbjct: 79  DHALGLYGVLNHAARPPPRSDHYTYSCALTACARSRRLRLGRSVHAHLLRRARSLPDTAV 138

Query: 268 LSAALMHMYCECTEALHPA----RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSR 323
           L  +L+++Y  C    H      R +F+ T  ++VV W++++  Y ++G   EA+++F R
Sbjct: 139 LRNSLLNLYASCARYRHGGVDVVRRLFDATPKRNVVSWNTLVGWYVKTGRPYEALEMFMR 198

Query: 324 MRLERIEPNSVTLLAILSSCTRQS----FLSHGLGVHCYIMKAGLNF--DVSIGNALMNM 377
           M  + I P  V+ + +  +         F  +G+     ++K G+ +  D+ + ++ + M
Sbjct: 199 MLEDGIRPTPVSFVNVFPAAASDDPSWPFFLYGM-----LIKHGVEYVSDLFVVSSAIAM 253

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE-MQESGVEPDAIT 436
           +S+ G + S+  +F+  A ++   W T+I+GY  +G   EA+ LF++ M   GV  D +T
Sbjct: 254 FSEIGDVQSARMVFDHAAKKNIEVWNTMITGYVQNGQFSEAMDLFIQIMGSKGVPLDVVT 313

Query: 437 VLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
            L+ ++A + +   K  + L   +MK  +  L +      V +  + G +  A  +   +
Sbjct: 314 FLSAITAASQSQDGKLGQQLHGYLMKGMRSTLPVILGNALVVMYSRCGNVHAAFDLFDQL 373

Query: 497 PMK 499
           P K
Sbjct: 374 PEK 376



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 65/132 (49%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           +G+   +  L SV+ AC         G Q+H  AL+   D +  +  +L+ MY+K  +  
Sbjct: 508 AGVEPTSVTLASVLPACEPVGEGVQAGKQIHSFALRHSLDTNIFVGTALVDMYSKCGEIT 567

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
           +A  +FD M  + T+++ ++I+   Q+GF  R+L +F  M   G    A      IS C+
Sbjct: 568 AAENVFDRMTEKSTVTYTTMISGLGQHGFGDRALFLFYSMQDNGLKPDAVTFLAAISACN 627

Query: 141 QIGELELGRQIH 152
             G ++ G  ++
Sbjct: 628 YSGLVDEGLSLY 639


>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Brachypodium distachyon]
          Length = 814

 Score =  288 bits (736), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 165/529 (31%), Positives = 288/529 (54%), Gaps = 4/529 (0%)

Query: 50  LHCTALKSGS-DADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           LH  ALK G   ++ V+ N+L+  Y K     +A ++F EMP+RD++++N+++   ++ G
Sbjct: 161 LHPFALKLGLLHSNVVVCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTYNAMMMGCSKEG 220

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
            +  +L++F  M   G        + ++++ + +G+L LGRQ+H LV    S   +VFV+
Sbjct: 221 SHAEALDLFAAMRRKGLAATRFTFSTVLTVATGVGDLCLGRQVHGLVARATSS--NVFVN 278

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
            +LLD YSKC       ++F +M+ R+ VS+  MI+G   ++     + LFR MQ     
Sbjct: 279 NSLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAWNRCASIVLRLFREMQSLSFD 338

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
              +    +L     +  +  GK IH      G   +  +  AL+ MY +C   L  A+ 
Sbjct: 339 RQALPYASLLSVAGSVPHIGIGKQIHAQLVLLGLSSEDLVGNALIDMYSKCG-MLDAAKT 397

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
            F     K  V W+++I G  Q+G   EA++LF  MR   + P+  T  + + + +  + 
Sbjct: 398 NFINKNDKTGVSWTAMITGCVQNGQQEEALQLFCGMRRAGLSPDRATFSSTIKASSNLAM 457

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
           +  G  +H Y++++G    V  G+AL++MY+KCG +  + Q F+EM  R+ +SW  +IS 
Sbjct: 458 IGLGRQLHSYLIRSGHMSSVFSGSALLDMYTKCGCLDEALQTFDEMPERNSISWNAVISA 517

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468
           Y  +G  + A+++F  M   G +PD++T L++LSAC+H GL +E    F  +  E  I+ 
Sbjct: 518 YAHYGQAKNAIKMFEGMLCYGFKPDSVTFLSVLSACSHNGLAEECMKYFELMEYEYGISP 577

Query: 469 AIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
             EHY+C +D LG+ G+ +   +++  MP +    I SS++ +CR HG  ++A + A +L
Sbjct: 578 WKEHYSCVIDTLGRVGRFDKVQEMLGEMPFEDDPIIWSSILHSCRTHGNQDLARVAAEKL 637

Query: 529 IEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
                 +A  Y +LS + +++G W  A  V ++MR +GL K  G+S +E
Sbjct: 638 FSMGSTDATPYVILSNIFAKAGKWEDAAGVKKIMRDRGLRKETGYSWVE 686



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 142/324 (43%), Gaps = 27/324 (8%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           Q+L   +Q L  + L S    +P           H   G Q+H   +  G  ++ ++ N+
Sbjct: 333 QSLSFDRQALPYASLLSVAGSVP-----------HIGIGKQIHAQLVLLGLSSEDLVGNA 381

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           LI MY+K    ++A   F     +  +SW ++I    QNG    +L++F  M   G    
Sbjct: 382 LIDMYSKCGMLDAAKTNFINKNDKTGVSWTAMITGCVQNGQQEEALQLFCGMRRAGLSPD 441

Query: 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVF 188
               +  I   S +  + LGRQ+H+ +I  G    SVF  +ALLD+Y+KC     AL+ F
Sbjct: 442 RATFSSTIKASSNLAMIGLGRQLHSYLIRSGHMS-SVFSGSALLDMYTKCGCLDEALQTF 500

Query: 189 EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248
           ++M  RN +SW A+IS           I +F  M   G KP  VT   VL AC+      
Sbjct: 501 DEMPERNSISWNAVISAYAHYGQAKNAIKMFEGMLCYGFKPDSVTFLSVLSACSH----- 555

Query: 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPAR------IIFERTKVKDVVIWS 302
           NG A     Y    ++++ +S    H  C         R      ++ E     D +IWS
Sbjct: 556 NGLAEECMKYFELMEYEYGISPWKEHYSCVIDTLGRVGRFDKVQEMLGEMPFEDDPIIWS 615

Query: 303 SIIRGYSQSG--DLSE--AMKLFS 322
           SI+      G  DL+   A KLFS
Sbjct: 616 SILHSCRTHGNQDLARVAAEKLFS 639



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 165/347 (47%), Gaps = 28/347 (8%)

Query: 193 IRNEVSWTAMISGCIDSQNY--DTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNG 250
           +R+ V+WT MI     +        + LFR M REGV P RVT+  VL     L     G
Sbjct: 96  LRDAVTWTVMIGAFASAPGARASDAVSLFRDMLREGVAPDRVTVATVL----NLPPASGG 151

Query: 251 KA-------IHGYAYCCGFDFDHHLSA-ALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
            A       +H +A   G    + +    L+  YC+    L  AR +F+    +D V ++
Sbjct: 152 TAAAIIIASLHPFALKLGLLHSNVVVCNTLLDAYCK-HGLLAAARRVFQEMPHRDSVTYN 210

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
           +++ G S+ G  +EA+ LF+ MR + +     T   +L+  T    L  G  VH  + +A
Sbjct: 211 AMMMGCSKEGSHAEALDLFAAMRRKGLAATRFTFSTVLTVATGVGDLCLGRQVHGLVARA 270

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
             + +V + N+L++ YSKC  +    ++F+EM  RD VS+  +I+GY ++      L+LF
Sbjct: 271 -TSSNVFVNNSLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAWNRCASIVLRLF 329

Query: 423 LEMQESGVEPDAI---TVLAILSACNHAGLVKE--AETLFNNVMKEKKIALAIEHYACYV 477
            EMQ    +  A+   ++L++  +  H G+ K+  A+ +   +  E  +  A+      +
Sbjct: 330 REMQSLSFDRQALPYASLLSVAGSVPHIGIGKQIHAQLVLLGLSSEDLVGNAL------I 383

Query: 478 DLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEML 524
           D+  K G + DA K         +    +++++ C  +G+ E A  L
Sbjct: 384 DMYSKCGML-DAAKTNFINKNDKTGVSWTAMITGCVQNGQQEEALQL 429



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 2/139 (1%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E+ L L+   +  +GL  + A   S IKA +        G QLH   ++SG  +     +
Sbjct: 424 EEALQLFCG-MRRAGLSPDRATFSSTIKASSNLAM-IGLGRQLHSYLIRSGHMSSVFSGS 481

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +L+ MY K    + A Q FDEMP R++ISWN++I+ +   G    +++MF  M   GF  
Sbjct: 482 ALLDMYTKCGCLDEALQTFDEMPERNSISWNAVISAYAHYGQAKNAIKMFEGMLCYGFKP 541

Query: 128 KAELLAGIISLCSQIGELE 146
            +     ++S CS  G  E
Sbjct: 542 DSVTFLSVLSACSHNGLAE 560


>gi|33146592|dbj|BAC79788.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 749

 Score =  287 bits (735), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 162/499 (32%), Positives = 282/499 (56%), Gaps = 5/499 (1%)

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
           + +L++ Y +  +   A  LFD+MP R  ++WN++I+   ++     ++  F  M   G 
Sbjct: 97  TTALLAFYCRSRRLPEAQHLFDQMPARTAVTWNTLIHGHARSAAPGLAVAAFARMARAGV 156

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
              A  ++ ++  C ++ +   G  +H++ ++ G F  SV V TAL+D+Y+KCHH   A 
Sbjct: 157 SPTASSVSSVLVACVRLEDAAAGATLHSVGLMHG-FCASVVVGTALVDMYAKCHHLGAAQ 215

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
           +VF +M  +N  ++TA+++G + S+     + L R M+R GV P  +T + +L + A   
Sbjct: 216 QVFREMEEKNVATFTALVAGFVLSRRPHDAMLLVREMERSGVAPNLMTYSSLLSSFASPE 275

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
           D+ +GK +H      G + D  + +AL+ MY +C    +  ++       +D V ++S+I
Sbjct: 276 DIDHGKQVHCAVLKKGLEHDQFVLSALVTMYSKCGILENFVKVQMS-VSCQDQVSFNSVI 334

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
            G S  G   EA + F  MR    + +  T  ++L +    S L  G  VH  I+K G +
Sbjct: 335 SGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASVLKAIGSSSSLLEGRQVHTLILKIGYD 394

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
             V + N+L++MY++ G+I  S+ +F  M A + VSW +L+SG   HG+G+E +++F +M
Sbjct: 395 SVVDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQM 454

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK--IALAIEHYACYVDLLGKS 483
           +   V+PD IT L++L+AC+H GLV +    F N+MK+K   +    EHYAC VDLLG++
Sbjct: 455 RRLHVQPDHITFLSVLTACSHVGLVDKGLEYF-NLMKDKGYLVGARTEHYACMVDLLGRA 513

Query: 484 GKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLS 543
           G + +A  +++ MP+KP   +  +L+SAC+IHG LE+   ++ +LIE  P +++ +  LS
Sbjct: 514 GYLNEAEYLINGMPIKPGASVYRALLSACQIHGNLEIVIRVSKRLIELNPHDSSVHVQLS 573

Query: 544 MVCSESGNWLGAEEVWRVM 562
              +  G W  A E+   M
Sbjct: 574 NAFAGDGRWGNAAEIREAM 592



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 92/396 (23%), Positives = 180/396 (45%), Gaps = 6/396 (1%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80
           +G+    + + SV+ AC   +     G  LH   L  G  A  V+  +L+ MYAK     
Sbjct: 154 AGVSPTASSVSSVLVACVRLEDAA-AGATLHSVGLMHGFCASVVVGTALVDMYAKCHHLG 212

Query: 81  SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140
           +A Q+F EM  ++  ++ +++  F  +     ++ + REM   G        + ++S  +
Sbjct: 213 AAQQVFREMEEKNVATFTALVAGFVLSRRPHDAMLLVREMERSGVAPNLMTYSSLLSSFA 272

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
              +++ G+Q+H  V+  G  E   FV +AL+ +YSKC      ++V   +  +++VS+ 
Sbjct: 273 SPEDIDHGKQVHCAVLKKG-LEHDQFVLSALVTMYSKCGILENFVKVQMSVSCQDQVSFN 331

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
           ++ISG             F  M+R G      T   VL A      L  G+ +H      
Sbjct: 332 SVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASVLKAIGSSSSLLEGRQVHTLILKI 391

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
           G+D    +  +L+ MY     A+  +  +F   +  ++V W+S++ G +Q G   E +++
Sbjct: 392 GYDSVVDVQNSLISMYAR-HGAIGESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEM 450

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN--ALMNMY 378
           F +MR   ++P+ +T L++L++C+    +  GL     +   G        +   ++++ 
Sbjct: 451 FEQMRRLHVQPDHITFLSVLTACSHVGLVDKGLEYFNLMKDKGYLVGARTEHYACMVDLL 510

Query: 379 SKCGSITSSHQIFNEMAARDFVS-WTTLISGYGFHG 413
            + G +  +  + N M  +   S +  L+S    HG
Sbjct: 511 GRAGYLNEAEYLINGMPIKPGASVYRALLSACQIHG 546



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 117/234 (50%), Gaps = 6/234 (2%)

Query: 13  LYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISM 72
           L  +E+  SG+  N     S++ + A  +   H G Q+HC  LK G + D  + ++L++M
Sbjct: 247 LLVREMERSGVAPNLMTYSSLLSSFASPEDIDH-GKQVHCAVLKKGLEHDQFVLSALVTM 305

Query: 73  YAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELL 132
           Y+K    E+  ++   +  +D +S+NS+I+  +  G    + + F EM   G  +     
Sbjct: 306 YSKCGILENFVKVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTF 365

Query: 133 AGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR--VFEQ 190
           A ++        L  GRQ+H L++  G ++  V V  +L+ +Y++  H  I     VF  
Sbjct: 366 ASVLKAIGSSSSLLEGRQVHTLILKIG-YDSVVDVQNSLISMYAR--HGAIGESNGVFIS 422

Query: 191 MVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
           M   N VSW +++SGC    +    +++F  M+R  V+P  +T   VL AC+ +
Sbjct: 423 MEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSHV 476


>gi|413944103|gb|AFW76752.1| hypothetical protein ZEAMMB73_846363 [Zea mays]
          Length = 562

 Score =  287 bits (735), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 167/559 (29%), Positives = 304/559 (54%), Gaps = 12/559 (2%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTAL--KSGSDADPVISNSLISMYAKFSK 78
           + LYS  ++L S + A A+ Q     G  +H  A+   S S  D  ++  L+  Y+ F  
Sbjct: 11  AALYS--SLLQSSMGANAFRQ-----GKSVHHRAIITSSASPPDLHLNTKLVIFYSHFGD 63

Query: 79  PESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISL 138
             +A ++FD MP+R  +SW ++++ + +N     +L++F  M   G           +  
Sbjct: 64  VAAARRVFDGMPHRSVVSWTAMVSGYAKNSRPQEALDLFAFMLRSGARPNQFTFGSAVRA 123

Query: 139 CSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
           C+       G QIHA     G F   +FV +AL+D++ +C     A R+F +M  ++ VS
Sbjct: 124 CTGARCARSGEQIHACA-AKGRFAGDMFVQSALMDMHLRCGSVGDARRLFAEMERKDLVS 182

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258
           W +++ G ++ ++ +  + LF +M R+G+ P   T    L AC  +  L N + IH    
Sbjct: 183 WNSLMRGFVEREHCNDALGLFDSMLRDGMLPDHFTFGSALKACGAISVLFNVELIHACII 242

Query: 259 CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSE-A 317
             G+  ++   A+L+  Y +C  +L  AR+I++     D+V  +++I GYS   + S+ A
Sbjct: 243 KLGYWDENVAIASLIDSYAKC-RSLSSARVIYDSMCEPDLVSSTALISGYSMDRNYSDDA 301

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
           MKLF ++  + +  +++ L ++L  C   + +  G  +H Y+ K     D+++ NAL++M
Sbjct: 302 MKLFCKIHRKGLRIDAILLSSLLGVCANVASIKFGTQIHAYMHKKQPMGDLALDNALVDM 361

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           Y+K G    S + F+EM  R+ +SWT+LI+    HG+GE+A+ LF  M+E GV+P+ +T 
Sbjct: 362 YAKSGEFLDSRRAFDEMPNRNVISWTSLITSCAQHGFGEDAVTLFARMEEDGVKPNDVTF 421

Query: 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
           L++LSAC+H+G++ +    F ++M +  I    +HY+  VDLL + G++EDA  +V    
Sbjct: 422 LSLLSACSHSGMMNKGMEYFTSMMSKYGIDPRFKHYSSAVDLLARGGQLEDAWMLVQNTN 481

Query: 498 MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEE 557
            +  + +  +++ AC++HG + + E  A  L+  +PE++ NY +L+ + +ES  W  A+ 
Sbjct: 482 TECKSSMYGTMLGACKVHGNMPLGETAAKNLLSIDPESSVNYAVLANMYAESHLWEDAQR 541

Query: 558 VWRVMRAKGLSKSYGFSRI 576
             +++      K  GFS I
Sbjct: 542 TRKLLVETSKGKEAGFSVI 560


>gi|115439575|ref|NP_001044067.1| Os01g0715900 [Oryza sativa Japonica Group]
 gi|20160882|dbj|BAB89820.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113533598|dbj|BAF05981.1| Os01g0715900 [Oryza sativa Japonica Group]
 gi|125571815|gb|EAZ13330.1| hypothetical protein OsJ_03251 [Oryza sativa Japonica Group]
          Length = 608

 Score =  287 bits (735), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 163/544 (29%), Positives = 286/544 (52%), Gaps = 36/544 (6%)

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
           +  L  + +  S   +A  LFD +P        ++I+  ++   +   L+ F  ++  G 
Sbjct: 22  TRPLHDLLSDASTSRAARHLFDAVPRPTPALCGTLISALSRLCSHQELLDAFSSLHRRGS 81

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
            +    +  ++  C+ +     G+Q+H   IV G     +FV TAL+D Y+K      A+
Sbjct: 82  DVPPGCVPLVVKSCAILAASRQGKQVHCHAIVRGLLG-DIFVQTALVDFYAKNGDMDCAV 140

Query: 186 RVFEQMVIRNEV-------------------------------SWTAMISGCIDSQNYDT 214
           +VF++M +++ +                               SW +MI+       Y  
Sbjct: 141 KVFDEMPVKDPIPMNCLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQE 200

Query: 215 GIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHL-SAALM 273
            + LFR M  EG +P  +T+  +   CA+  DL  GK     +     D  + +   ALM
Sbjct: 201 ALRLFRRMLSEGARPNAITIATMFSICAKTGDLETGK--WARSLIAEQDLQNMIVHTALM 258

Query: 274 HMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNS 333
            MY +C  A+  AR  F+R + +DVV WS++I GY+Q+G   E+++LF RM+    +PN 
Sbjct: 259 EMYVKC-RAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNE 317

Query: 334 VTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNE 393
           VTL+ +LS+C +      G  +  ++    L     +G+AL++MY+KCG +  +  +FN 
Sbjct: 318 VTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNR 377

Query: 394 MAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEA 453
           M  +  ++W +++ G   +G+ ++A+ L+ EM E  V+P+ IT +A+L+AC HAGLV + 
Sbjct: 378 MEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQG 437

Query: 454 ETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACR 513
            + F  +     ++  +EH AC VDLL KSG++ +A K +  M ++P+  I S+L+SACR
Sbjct: 438 MSFFKEMKTIHHVSPQVEHCACIVDLLCKSGRLREAYKFICDMEVEPNAVIWSTLLSACR 497

Query: 514 IHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGF 573
            H  +E+A++ A +L+  EP+N++ Y LLS + +++G W    E+  +MR+K + K   +
Sbjct: 498 AHADVELAKLAASKLLVLEPDNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNVQKLSAY 557

Query: 574 SRIE 577
           S IE
Sbjct: 558 SWIE 561



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 136/484 (28%), Positives = 230/484 (47%), Gaps = 43/484 (8%)

Query: 18  LHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFS 77
           LH  G       +P V+K+CA     +  G Q+HC A+  G   D  +  +L+  YAK  
Sbjct: 76  LHRRGSDVPPGCVPLVVKSCAILAASRQ-GKQVHCHAIVRGLLGDIFVQTALVDFYAKNG 134

Query: 78  KPESAYQLFDEMPYRDTI-------------------------------SWNSIINCFTQ 106
             + A ++FDEMP +D I                               SWNS+I C+  
Sbjct: 135 DMDCAVKVFDEMPVKDPIPMNCLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAH 194

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
            G Y  +L +FR M   G    A  +A + S+C++ G+LE G+   +L I +   + ++ 
Sbjct: 195 GGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLETGKWARSL-IAEQDLQ-NMI 252

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           V TAL+++Y KC     A R F++M  R+ V+W+ MI+G   +      ++LF  M+   
Sbjct: 253 VHTALMEMYVKCRAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATS 312

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
            KP  VTL  VL ACA+L     G  I  +          +L +AL+ MY +C   +  A
Sbjct: 313 CKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGH-VGRA 371

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
           R +F R + K V+ W+S++RG + +G   +A+ L+  M  E ++PN +T +A+L++CT  
Sbjct: 372 RSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTACTHA 431

Query: 347 SFLSHGLGVHCYIMKA--GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR-DFVSWT 403
             +  G+      MK    ++  V     ++++  K G +  +++   +M    + V W+
Sbjct: 432 GLVDQGMSFF-KEMKTIHHVSPQVEHCACIVDLLCKSGRLREAYKFICDMEVEPNAVIWS 490

Query: 404 TLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC-NHAGLVKEAETLFNNVMK 462
           TL+S    H   E  L      +   +EPD  ++  +LS     AGL  +   +  ++M+
Sbjct: 491 TLLSACRAHADVE--LAKLAASKLLVLEPDNSSIYVLLSNIYADAGLWGDVREI-RDLMR 547

Query: 463 EKKI 466
            K +
Sbjct: 548 SKNV 551


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  287 bits (735), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 157/529 (29%), Positives = 286/529 (54%), Gaps = 35/529 (6%)

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A  +F+ +   + + WN++      N   V +L+++  M   G +  +     ++  C++
Sbjct: 18  AISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKSCAK 77

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSK--------------CHHWLI---- 183
              L  G+QIH  V+  G ++L ++V+T+L+ +Y++               H  ++    
Sbjct: 78  SKALIEGQQIHGHVLKLG-YDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTA 136

Query: 184 -------------ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPT 230
                        A ++F+++ +++ VSW AMISG +++ N+   ++L++ M +  VKP 
Sbjct: 137 LITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPD 196

Query: 231 RVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIF 290
             T+  V+ ACA+   +  G+ +H +    GF  +  +   L+ +Y +C E +  A  +F
Sbjct: 197 ESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGE-VETACGLF 255

Query: 291 ERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLS 350
           +    KDV+ W+++I G++      EA+ LF  M      PN VT+L++L +C     + 
Sbjct: 256 QGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAID 315

Query: 351 HGLGVHCYIMK--AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
            G  +H YI K   G+    S+  +L++MY+KCG I ++ Q+F+ M  R   SW  +I G
Sbjct: 316 IGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFG 375

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468
           +  HG    A  LF +M+++G++PD IT + +LSAC+H+G++     +F ++ ++ KI  
Sbjct: 376 FAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITP 435

Query: 469 AIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
            +EHY C +DLLG  G  ++A +++ TMPM+P   I  SL+ AC++H  +E+ E  A  L
Sbjct: 436 KLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGESYAQNL 495

Query: 529 IEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           I+ EPEN  +Y LLS + + +G W    ++  ++  KG+ K+ G S IE
Sbjct: 496 IKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSIE 544



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 130/482 (26%), Positives = 225/482 (46%), Gaps = 54/482 (11%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           GL  N+   P ++K+CA ++     G Q+H   LK G D D  ++ SLISMYA+  + E 
Sbjct: 60  GLLPNSYSFPFLLKSCAKSKALIE-GQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLED 118

Query: 82  AYQ-------------------------------LFDEMPYRDTISWNSIINCFTQNGFY 110
           A++                               LFDE+  +D +SWN++I+ + +   +
Sbjct: 119 AHKVFDRSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNF 178

Query: 111 VRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTA 170
             +LE++++M           +  ++S C+Q G +ELGRQ+H+  I D  F  ++ +   
Sbjct: 179 KEALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSW-IEDHGFGSNIKIVNV 237

Query: 171 LLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPT 230
           L+DLYSKC     A  +F+ +  ++ +SW  +I G      Y   + LF+ M R G  P 
Sbjct: 238 LIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPN 297

Query: 231 RVTLTIVLLACAELRDLRNGKAIHGY--AYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
            VT+  VL ACA L  +  G+ IH Y      G      L  +L+ MY +C + +  A+ 
Sbjct: 298 DVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGD-IEAAKQ 356

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
           +F+    + +  W+++I G++  G  + A  LFS+MR   I+P+ +T + +LS+C+    
Sbjct: 357 VFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGM 416

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNAL------MNMYSKCGSITSSHQIFNEMAAR-DFVS 401
           L   LG H +     ++ D  I   L      +++   CG    + ++   M    D V 
Sbjct: 417 LD--LGRHIF---RSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVI 471

Query: 402 WTTLISGYGFHG---YGEEALQLFLEMQESGVEPDAITVLA-ILSACNHAGLVKEAETLF 457
           W +L+     H     GE   Q  ++++     P +  +L+ I +       V +  TL 
Sbjct: 472 WCSLLKACKMHNNVELGESYAQNLIKIEPE--NPGSYVLLSNIYATAGRWDQVAKIRTLL 529

Query: 458 NN 459
           N+
Sbjct: 530 ND 531



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 161/344 (46%), Gaps = 23/344 (6%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           +++ L LYK ++  + +  + + + +V+ ACA + + +  G QLH      G  ++  I 
Sbjct: 178 FKEALELYK-DMMKTNVKPDESTMVTVVSACAQSGSIE-LGRQLHSWIEDHGFGSNIKIV 235

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           N LI +Y+K  + E+A  LF  +  +D ISWN++I   T    Y  +L +F+EM   G  
Sbjct: 236 NVLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGES 295

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALV--IVDGSFELSVFVSTALLDLYSKCHHWLIA 184
                +  ++  C+ +G +++GR IH  +   + G    S  + T+L+D+Y+KC     A
Sbjct: 296 PNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLL-TSLIDMYAKCGDIEAA 354

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
            +VF+ M+ R+  SW AMI G       +   DLF  M++ G+ P  +T   +L AC+  
Sbjct: 355 KQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHS 414

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYC------ECTEALHPARIIFERTKVKDV 298
             L  G+ I           D+ ++  L H  C       C        +I       D 
Sbjct: 415 GMLDLGRHIFR-----SMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDG 469

Query: 299 VIWSSIIRGYSQSGDL----SEAMKLFSRMRLERIEPNSVTLLA 338
           VIW S+++      ++    S A  L   +++E   P S  LL+
Sbjct: 470 VIWCSLLKACKMHNNVELGESYAQNL---IKIEPENPGSYVLLS 510



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 159/328 (48%), Gaps = 44/328 (13%)

Query: 281 EALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAIL 340
           + L  A  IFE  +  +++IW+++ RG++ + D   A+KL+  M    + PNS +   +L
Sbjct: 13  DGLSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLL 72

Query: 341 SSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFV 400
            SC +   L  G  +H +++K G + D+ +  +L++MY++ G +  +H++F+  + R  V
Sbjct: 73  KSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVV 132

Query: 401 SWTTLISGYGFHGY-------------------------------GEEALQLFLEMQESG 429
           S+T LI+GY   GY                                +EAL+L+ +M ++ 
Sbjct: 133 SYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTN 192

Query: 430 VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
           V+PD  T++ ++SAC  +G ++    L ++ +++      I+     +DL  K G++E A
Sbjct: 193 VKPDESTMVTVVSACAQSGSIELGRQL-HSWIEDHGFGSNIKIVNVLIDLYSKCGEVETA 251

Query: 490 CKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCS-- 547
           C +   +  K      ++L+     H  L    +L  Q +    E+  + T+LS++ +  
Sbjct: 252 CGLFQGLAKKDVIS-WNTLIGG-HTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACA 309

Query: 548 -----ESGNWLGAEEVWRVMRAKGLSKS 570
                + G W+    V+   R KG++ +
Sbjct: 310 HLGAIDIGRWI---HVYINKRLKGVTNA 334


>gi|296090522|emb|CBI40853.3| unnamed protein product [Vitis vinifera]
          Length = 749

 Score =  287 bits (735), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 179/579 (30%), Positives = 300/579 (51%), Gaps = 62/579 (10%)

Query: 29  ILPSVIKA--CA----YAQTHQHFG----LQLH------CTALKSGSDADPV-------- 64
           I PS++K+  CA    +A  H        LQL+      C  +KS +D   +        
Sbjct: 49  IPPSIVKSFTCAAKSFFATAHNGASFSESLQLYSSLIQQCIGIKSITDITKIQSHALKRG 108

Query: 65  ----ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
               + N LI  Y K      A ++FDE+P+R  ++WNS+I  + +NG    ++++++ M
Sbjct: 109 FHHSLGNKLIDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRM 168

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
              G +      + +    S +G +  G++ H   +V G    +VFV +AL+D+Y+K   
Sbjct: 169 VPDGILPDEFTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGK 228

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
              A  V +Q+V ++ V +TA+I G          + +FR M ++G++    TL+ VL+ 
Sbjct: 229 MRDARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKGIEANEYTLSSVLVC 288

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
           C  L DL +G+ IHG     G +                                   V 
Sbjct: 289 CGNLEDLTSGRLIHGLIVKAGLE---------------------------------SAVT 315

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           W+S+I G  Q+G    A+  F +M    I PNS TL ++L +C+  + L  G  +H  +M
Sbjct: 316 WTSVIVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQIHAIVM 375

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
           K GL+ D  +G AL++ Y KCGS   +  +FN +   D VS  ++I  Y  +G+G EALQ
Sbjct: 376 KFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQNGFGHEALQ 435

Query: 421 LFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLL 480
           LF  M+++G+EP+ +T L +LSACN+AGL++E   +F++      I L  +HYAC VDLL
Sbjct: 436 LFSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNSGNIELTKDHYACMVDLL 495

Query: 481 GKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYT 540
           G++G++++A  +++ + +     I  +L+SACRIHG +E+A+ + +++I+  PE+   + 
Sbjct: 496 GRAGRLKEAEMLINQVNISDVV-IWRTLLSACRIHGDVEMAKRVMNRVIDLAPEDGGTHV 554

Query: 541 LLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIENE 579
           LLS + + +GNW    E+   MR   L K+   S ++ E
Sbjct: 555 LLSNLYASTGNWSKVIEMKSAMREMRLKKNPAMSWVDVE 593


>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 667

 Score =  287 bits (735), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 176/559 (31%), Positives = 288/559 (51%), Gaps = 33/559 (5%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           +H   +  G  A  V    L+S+  +      A+ LFD++P  +   +N +I  ++ +  
Sbjct: 58  VHAQIILHGLAAQVVTLGKLLSLCVQEGDLRYAHLLFDQIPQPNKFMYNHLIRGYSNSND 117

Query: 110 YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVST 169
            ++SL +FR+M   G +        ++  C+          +HA  I  G    +  V  
Sbjct: 118 PMKSLLLFRQMVSAGPMPNQFTFPFVLKACAAKPFYWEAVIVHAQAIKLGMGPHAC-VQN 176

Query: 170 ALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKP 229
           A+L  Y  C   L A +VF+ +  R  VSW +MI+G       D  I LF+ M + GV+ 
Sbjct: 177 AILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEA 236

Query: 230 TRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARII 289
              TL  +L A ++  +L  G+ +H Y    G + D  ++ AL+ MY +C   L  A+ +
Sbjct: 237 DVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGH-LQFAKHV 295

Query: 290 FERTKVKDVVIWSSIIRGYS-------------------------------QSGDLSEAM 318
           F++   KDVV W+S++  Y+                               Q G  +EA+
Sbjct: 296 FDQMLDKDVVSWTSMVNAYANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAV 355

Query: 319 KLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMY 378
           +LF RM +  + P+  TL++ILS C+    L+ G   HCYI    +   V++ N+L++MY
Sbjct: 356 ELFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYICDNIITVSVTLCNSLIDMY 415

Query: 379 SKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
           +KCG++ ++  IF  M  ++ VSW  +I     HG+GEEA+++F  MQ SG+ PD IT  
Sbjct: 416 AKCGALQTAIDIFFGMPEKNVVSWNVIIGALALHGFGEEAIEMFKSMQASGLYPDEITFT 475

Query: 439 AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPM 498
            +LSAC+H+GLV      F+ ++   +I+  +EHYAC VDLLG+ G + +A  ++  MP+
Sbjct: 476 GLLSACSHSGLVDMGRYYFDIMISTFRISPGVEHYACMVDLLGRGGFLGEAMTLIQKMPV 535

Query: 499 KPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEV 558
           KP   +  +L+ ACRI+G LE+A+ +  QL+E    N+  Y LLS + SES  W   +++
Sbjct: 536 KPDVVVWGALLGACRIYGNLEIAKQIMKQLLELGRFNSGLYVLLSNMYSESQRWDDMKKI 595

Query: 559 WRVMRAKGLSKSYGFSRIE 577
            ++M   G+ K    S IE
Sbjct: 596 RKIMDDSGIKKCRAISFIE 614



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 104/378 (27%), Positives = 175/378 (46%), Gaps = 52/378 (13%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           F ++ + L+ QE+   G+ ++   L S++ A +    +   G  +H   + +G + D ++
Sbjct: 218 FCDEAILLF-QEMLQLGVEADVFTLVSLLSASS-KHCNLDLGRFVHLYIVITGVEIDSIV 275

Query: 66  SNSLISMYAK-----FSK--------------------------PESAYQLFDEMPYRDT 94
           +N+LI MYAK     F+K                           E+A Q+F+ MP ++ 
Sbjct: 276 TNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYANQGLVENAVQIFNHMPVKNV 335

Query: 95  ISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHAL 154
           +SWNSII C  Q G Y  ++E+F  M + G +     L  I+S CS  G+L LG+Q H  
Sbjct: 336 VSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCY 395

Query: 155 VIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDT 214
            I D    +SV +  +L+D+Y+KC     A+ +F  M  +N VSW  +I         + 
Sbjct: 396 -ICDNIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVVSWNVIIGALALHGFGEE 454

Query: 215 GIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDF---DHHLSAA 271
            I++F++MQ  G+ P  +T T +L AC+      +G    G  Y   FD       +S  
Sbjct: 455 AIEMFKSMQASGLYPDEITFTGLLSACS-----HSGLVDMGRYY---FDIMISTFRISPG 506

Query: 272 LMHMYCECT-----EALHPARIIFERTKVK-DVVIWSSIIRGYSQSGDLSEAMKLFSR-M 324
           + H  C          L  A  + ++  VK DVV+W +++      G+L  A ++  + +
Sbjct: 507 VEHYACMVDLLGRGGFLGEAMTLIQKMPVKPDVVVWGALLGACRIYGNLEIAKQIMKQLL 566

Query: 325 RLERIEPNSVTLLAILSS 342
            L R       LL+ + S
Sbjct: 567 ELGRFNSGLYVLLSNMYS 584



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 100/209 (47%), Gaps = 7/209 (3%)

Query: 1   MVSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD 60
           +V +  Y + + L+   +  SG+  + A L S++  C+        G Q HC    +   
Sbjct: 345 LVQEGQYTEAVELF-HRMCISGVMPDDATLVSILSCCSNT-GDLALGKQAHCYICDNIIT 402

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
               + NSLI MYAK    ++A  +F  MP ++ +SWN II     +GF   ++EMF+ M
Sbjct: 403 VSVTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVVSWNVIIGALALHGFGEEAIEMFKSM 462

Query: 121 YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS--TALLDLYSKC 178
              G         G++S CS  G +++GR    ++I   +F +S  V     ++DL  + 
Sbjct: 463 QASGLYPDEITFTGLLSACSHSGLVDMGRYYFDIMI--STFRISPGVEHYACMVDLLGRG 520

Query: 179 HHWLIALRVFEQMVIRNE-VSWTAMISGC 206
                A+ + ++M ++ + V W A++  C
Sbjct: 521 GFLGEAMTLIQKMPVKPDVVVWGALLGAC 549


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  287 bits (735), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 161/502 (32%), Positives = 275/502 (54%), Gaps = 3/502 (0%)

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
           F     A++ F E+   D + WN+II  +TQ       + M+ +M +            +
Sbjct: 32  FGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYV 91

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           +  C       +G+QIH      G F  +VFV  +L+ +Y+K      A  VF+++  R 
Sbjct: 92  LKACGGTSVEGIGKQIHGQTFKYG-FGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRT 150

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
            VSWT++ISG + + +    +++F+ M++  VKP  + L  V+ A   + DL  GK+IHG
Sbjct: 151 VVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHG 210

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
                G +F+  +  +L  MY +    +  AR  F R +  ++++W+++I GY+ +G   
Sbjct: 211 LVTKLGLEFEPDIVISLTTMYAK-RGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGE 269

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           EA+KLF  M  + I  +S+T+ + + +  +   L     +  YI K+    D  +   L+
Sbjct: 270 EAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLI 329

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           +MY+KCGSI  +  +F+ +A +D V W+ +I GYG HG+G+EA+ L+ EM+++GV P+  
Sbjct: 330 DMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDG 389

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           T + +L+AC ++GLVKE   LF ++M +  I    +HY+C VDLLG++G +  A   + +
Sbjct: 390 TFIGLLTACKNSGLVKEGWELF-HLMPDHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMS 448

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGA 555
           MP+KP   +  +L+SAC+IH ++ + E+ A QL   +P N  +Y  LS + + +  W   
Sbjct: 449 MPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTRV 508

Query: 556 EEVWRVMRAKGLSKSYGFSRIE 577
             V  +M  KGL+K  G S IE
Sbjct: 509 ANVRLMMTQKGLNKDLGHSSIE 530



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 113/411 (27%), Positives = 203/411 (49%), Gaps = 7/411 (1%)

Query: 4   KHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADP 63
           K+  +  + +Y  ++  S ++ N      V+KAC    + +  G Q+H    K G  ++ 
Sbjct: 63  KNIVDAPIRMY-MDMQISQVHPNCFTFLYVLKACG-GTSVEGIGKQIHGQTFKYGFGSNV 120

Query: 64  VISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC 123
            + NSL+SMYAKF +   A  +FD++  R  +SW SII+ + QNG  + +L +F+EM  C
Sbjct: 121 FVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQC 180

Query: 124 GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDG-SFELSVFVSTALLDLYSKCHHWL 182
                   L  +++  + + +L  G+ IH LV   G  FE  + +S  L  +Y+K     
Sbjct: 181 NVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVIS--LTTMYAKRGLVE 238

Query: 183 IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
           +A   F +M   N + W AMISG  ++   +  I LFR M  + ++   +T+   +LA A
Sbjct: 239 VARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASA 298

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
           ++  L   + + GY     +  D  ++  L+ MY +C  +++ AR +F+R   KDVV+WS
Sbjct: 299 QVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCG-SIYLARCVFDRVADKDVVLWS 357

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
            +I GY   G   EA+ L++ M+   + PN  T + +L++C     +  G  +   +   
Sbjct: 358 VMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDH 417

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS-WTTLISGYGFH 412
           G+       + ++++  + G +  ++     M  +  VS W  L+S    H
Sbjct: 418 GIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIH 468


>gi|302797883|ref|XP_002980702.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
 gi|300151708|gb|EFJ18353.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
          Length = 1108

 Score =  287 bits (735), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 169/560 (30%), Positives = 295/560 (52%), Gaps = 10/560 (1%)

Query: 21  SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSD-ADPVISNSLISMYAKFSKP 79
           +G+  N     +++ AC+ ++    FG ++H   L    D  +  ++  L+SMY K    
Sbjct: 431 AGIDPNKVSFIAILNACSNSEALD-FGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSI 489

Query: 80  ESAYQLFDEMPY--RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS 137
             A  +F EMP   R  ++WN ++  + QN     +     EM   G +  A     ++S
Sbjct: 490 AEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTSVLS 549

Query: 138 LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197
            C    E ++ R    + I++  +  S  + TAL+ ++ +C     A  VF++M   + V
Sbjct: 550 SCYCSQEAQVLR----MCILESGYR-SACLETALISMHGRCRELEQARSVFDEMDHGDVV 604

Query: 198 SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257
           SWTAM+S   +++++     LFR MQ EGV P + TL   L  C +   L  GK IH   
Sbjct: 605 SWTAMVSATAENRDFKEVHHLFRRMQLEGVIPDKFTLATTLDTCLDSTTLGLGKIIHACV 664

Query: 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317
              G + D  +  AL++MY  C +    A   FE  K +D+V W+ +   Y+Q+G   EA
Sbjct: 665 TEIGLEADIAVENALLNMYSNCGD-WREALSFFETMKARDLVSWNIMSAAYAQAGLAKEA 723

Query: 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
           + LF  M+LE ++P+ +T    L+     + +S G   H    ++GL+ DVS+   L+ +
Sbjct: 724 VLLFRHMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHGLAAESGLDSDVSVATGLVKL 783

Query: 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITV 437
           Y+KCG +  +  +F        V    +I     HG+ EEA+++F +MQ+ GV PD  T+
Sbjct: 784 YAKCGKLDEAISLFRGACQWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPDVATL 843

Query: 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497
           ++I+SAC HAG+V+E  + F  + +   I+  +EHYAC+VDLLG++G++E A +++  MP
Sbjct: 844 VSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACFVDLLGRAGQLEHAEQIIRKMP 903

Query: 498 MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEE 557
            + +T + +SL+  C++ G  E+ E  A +++E +P N+A + +LS +   +G W  A+ 
Sbjct: 904 FEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPHNSAAHVVLSNIYCATGKWKDADV 963

Query: 558 VWRVMRAKGLSKSYGFSRIE 577
             + +  + +  + G S +E
Sbjct: 964 DRKKLLDQNVKNAPGMSWLE 983



 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 152/543 (27%), Positives = 257/543 (47%), Gaps = 19/543 (3%)

Query: 16  QELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAK 75
           + L   G+  N+  L +++ A A +        + H    +SG   D V+ N++ISMYAK
Sbjct: 323 RRLRLEGMRPNSVTLITILNALAASGVDFGAARKFHGRIWESGYLRDVVVGNAIISMYAK 382

Query: 76  FSKPESAYQLFDEMPYR-DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAG 134
                +A+ +F  + ++ D ISWN+++        + + +  F  M L G          
Sbjct: 383 CGFFSAAWTVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIA 442

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI- 193
           I++ CS    L+ GR+IH+L++      +   V+T L+ +Y KC     A  VF++M + 
Sbjct: 443 ILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSIAEAELVFKEMPLP 502

Query: 194 -RNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC---AELRDLRN 249
            R+ V+W  M+     +            M + GV P  ++ T VL +C    E + LR 
Sbjct: 503 SRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTSVLSSCYCSQEAQVLRM 562

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
                GY   C       L  AL+ M+  C E L  AR +F+     DVV W++++   +
Sbjct: 563 CILESGYRSAC-------LETALISMHGRCRE-LEQARSVFDEMDHGDVVSWTAMVSATA 614

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369
           ++ D  E   LF RM+LE + P+  TL   L +C   + L  G  +H  + + GL  D++
Sbjct: 615 ENRDFKEVHHLFRRMQLEGVIPDKFTLATTLDTCLDSTTLGLGKIIHACVTEIGLEADIA 674

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
           + NAL+NMYS CG    +   F  M ARD VSW  + + Y   G  +EA+ LF  MQ  G
Sbjct: 675 VENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRHMQLEG 734

Query: 430 VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489
           V+PD +T    L+    + LV + + LF+ +  E  +   +      V L  K GK+++A
Sbjct: 735 VKPDKLTFSTTLNVSGGSALVSDGK-LFHGLAAESGLDSDVSVATGLVKLYAKCGKLDEA 793

Query: 490 CKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE--AEPENAANYTLLSMVCS 547
             +      + +  +L++++ A   HG  E A  +  ++ +    P+ A   +++S  C 
Sbjct: 794 ISLFRG-ACQWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPDVATLVSIIS-ACG 851

Query: 548 ESG 550
            +G
Sbjct: 852 HAG 854



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 132/490 (26%), Positives = 246/490 (50%), Gaps = 20/490 (4%)

Query: 27  TAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLF 86
           TA+L S + +   A+     G + H     +G +    + N LI+MY +    E A+ +F
Sbjct: 29  TALLQSCVDSNDLAK-----GKRAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIF 83

Query: 87  DEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL-CGFVLKAELLAGIISLCSQIGEL 145
            +M  R+ +SW ++I+   Q+G + R+  +FR M L       +  L  +++ C+   +L
Sbjct: 84  SKMEERNVVSWTALISANAQSGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDL 143

Query: 146 ELGRQIHALVI---VDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAM 202
            +GR IHA++    ++     +  V  A++++Y+KC     A+ VF  +  ++ VSWTAM
Sbjct: 144 AIGRSIHAMIWELGLERESTTATLVGNAMINMYAKCGSPEDAIAVFLTIPEKDVVSWTAM 203

Query: 203 ISGCIDSQN-YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
                  +  Y   + +FR M  + + P  +T    L AC  LRD   G  +H   +  G
Sbjct: 204 AGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACTSLRD---GTWLHSLLHEAG 260

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVK---DVVIWSSIIRGYSQSGDLSEAM 318
             FD     AL++MY +C +    A  +F+    +   D+V W+++I    ++G   +AM
Sbjct: 261 LGFDPLAGNALINMYGKCGD-WEGAYGVFKAMASRQELDLVSWNAMISASVEAGRHGDAM 319

Query: 319 KLFSRMRLERIEPNSVTLLAILSSCTRQSF-LSHGLGVHCYIMKAGLNFDVSIGNALMNM 377
            +F R+RLE + PNSVTL+ IL++              H  I ++G   DV +GNA+++M
Sbjct: 320 AIFRRLRLEGMRPNSVTLITILNALAASGVDFGAARKFHGRIWESGYLRDVVVGNAIISM 379

Query: 378 YSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAIT 436
           Y+KCG  +++  +F  +  + D +SW T++          + +  F  M  +G++P+ ++
Sbjct: 380 YAKCGFFSAAWTVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVS 439

Query: 437 VLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
            +AIL+AC+++  +     + + ++  ++  +        V + GK G I +A  V   M
Sbjct: 440 FIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSIAEAELVFKEM 499

Query: 497 PMKPSTRILS 506
           P+ PS  +++
Sbjct: 500 PL-PSRSLVT 508


>gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana]
          Length = 1702

 Score =  287 bits (735), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 177/578 (30%), Positives = 303/578 (52%), Gaps = 9/578 (1%)

Query: 6    FYEQTLHLYKQELHPSG---LYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDAD 62
            F E++  L  + +  +G      + A L +V+  CA  +     G  +H  A+K   D +
Sbjct: 623  FSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCA-REREIGLGKGVHGWAVKLRLDKE 681

Query: 63   PVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYL 122
             V++N+L+ MY+K     +A  +F     ++ +SWN+++  F+  G    + ++ R+M  
Sbjct: 682  LVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLA 741

Query: 123  CGFVLKAE--LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
             G  +KA+   +   + +C     L   +++H   +    F  +  V+ A +  Y+KC  
Sbjct: 742  GGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQ-EFVYNELVANAFVASYAKCGS 800

Query: 181  WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240
               A RVF  +  +   SW A+I G   S +    +D    M+  G+ P   T+  +L A
Sbjct: 801  LSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSA 860

Query: 241  CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
            C++L+ LR GK +HG+      + D  +  +++ +Y  C E L   + +F+  + K +V 
Sbjct: 861  CSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGE-LCTVQALFDAMEDKSLVS 919

Query: 301  WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
            W+++I GY Q+G    A+ +F +M L  I+   ++++ +  +C+    L  G   H Y +
Sbjct: 920  WNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYAL 979

Query: 361  KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
            K  L  D  I  +L++MY+K GSIT S ++FN +  +   SW  +I GYG HG  +EA++
Sbjct: 980  KHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIK 1039

Query: 421  LFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLL 480
            LF EMQ +G  PD +T L +L+ACNH+GL+ E     + +     +   ++HYAC +D+L
Sbjct: 1040 LFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDML 1099

Query: 481  GKSGKIEDACKVVS-TMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANY 539
            G++G+++ A +VV+  M  +    I  SL+S+CRIH  LE+ E +A +L E EPE   NY
Sbjct: 1100 GRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENY 1159

Query: 540  TLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
             LLS + +  G W    +V + M    L K  G S IE
Sbjct: 1160 VLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIE 1197



 Score =  208 bits (529), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 152/559 (27%), Positives = 276/559 (49%), Gaps = 24/559 (4%)

Query: 5    HFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPV 64
              Y++ L  + + +  + L  +    P VIKACA   +    GL +H   +K+G   D  
Sbjct: 520  ELYDEVLETFIEMISTTDLLPDHFTYPCVIKACA-GMSDVGIGLAVHGLVVKTGLVEDVF 578

Query: 65   ISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSL----EMFREM 120
            + N+L+S Y        A QLFD MP R+ +SWNS+I  F+ NGF   S     EM  E 
Sbjct: 579  VGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEEN 638

Query: 121  YLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
                F+     L  ++ +C++  E+ LG+ +H    V    +  + ++ AL+D+YSKC  
Sbjct: 639  GDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWA-VKLRLDKELVLNNALMDMYSKCGC 697

Query: 181  WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM--QREGVKPTRVTLTIVL 238
               A  +F+    +N VSW  M+ G     +     D+ R M    E VK   VT+   +
Sbjct: 698  ITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAV 757

Query: 239  LACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDV 298
              C     L + K +H Y+    F ++  ++ A +  Y +C  +L  A+ +F   + K V
Sbjct: 758  PVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCG-SLSYAQRVFHGIRSKTV 816

Query: 299  VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCY 358
              W+++I G++QS D   ++    +M++  + P+S T+ ++LS+C++   L  G  VH +
Sbjct: 817  NSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGF 876

Query: 359  IMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEA 418
            I++  L  D+ +  +++++Y  CG + +   +F+ M  +  VSW T+I+GY  +G+ + A
Sbjct: 877  IIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRA 936

Query: 419  LQLFLEMQESGVEPDAITVLAILSACN-----HAGLVKEAETLFNNVMKEKKIALAIEHY 473
            L +F +M   G++   I+++ +  AC+       G    A  L + +  +  IA ++   
Sbjct: 937  LGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSL--- 993

Query: 474  ACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEP 533
               +D+  K+G I  + KV + +  K ST   ++++    IHG  + A  L  ++ +   
Sbjct: 994  ---IDMYAKNGSITQSSKVFNGLKEK-STASWNAMIMGYGIHGLAKEAIKLFEEM-QRTG 1048

Query: 534  ENAANYTLLSMV--CSESG 550
             N  + T L ++  C+ SG
Sbjct: 1049 HNPDDLTFLGVLTACNHSG 1067



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 120/391 (30%), Positives = 201/391 (51%), Gaps = 9/391 (2%)

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D V+   +I+MYA    P+ +  +FD +  ++   WN++I+ +++N  Y   LE F EM 
Sbjct: 474 DDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMI 533

Query: 122 LCGFVLKAELL-AGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180
               +L        +I  C+ + ++ +G  +H LV+  G  E  VFV  AL+  Y     
Sbjct: 534 STTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVE-DVFVGNALVSFYGTHGF 592

Query: 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE----GVKPTRVTLTI 236
              AL++F+ M  RN VSW +MI    D+   +    L   M  E       P   TL  
Sbjct: 593 VTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVT 652

Query: 237 VLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK 296
           VL  CA  R++  GK +HG+A     D +  L+ ALM MY +C   +  A++IF+    K
Sbjct: 653 VLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCG-CITNAQMIFKMNNNK 711

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRL--ERIEPNSVTLLAILSSCTRQSFLSHGLG 354
           +VV W++++ G+S  GD      +  +M    E ++ + VT+L  +  C  +SFL     
Sbjct: 712 NVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKE 771

Query: 355 VHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGY 414
           +HCY +K    ++  + NA +  Y+KCGS++ + ++F+ + ++   SW  LI G+     
Sbjct: 772 LHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSND 831

Query: 415 GEEALQLFLEMQESGVEPDAITVLAILSACN 445
              +L   L+M+ SG+ PD+ TV ++LSAC+
Sbjct: 832 PRLSLDAHLQMKISGLLPDSFTVCSLLSACS 862



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 165/342 (48%), Gaps = 14/342 (4%)

Query: 125 FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
           F+L  E L  ++    +  ++E+GR+IH LV           + T ++ +Y+ C     +
Sbjct: 435 FLLVREALGLLLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDS 494

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM-QREGVKPTRVTLTIVLLACAE 243
             VF+ +  +N   W A+IS    ++ YD  ++ F  M     + P   T   V+ ACA 
Sbjct: 495 RFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAG 554

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCE---CTEALHPARIIFERTKVKDVVI 300
           + D+  G A+HG     G   D  +  AL+  Y      T+AL    I+ ER    ++V 
Sbjct: 555 MSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPER----NLVS 610

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIE----PNSVTLLAILSSCTRQSFLSHGLGVH 356
           W+S+IR +S +G   E+  L   M  E  +    P+  TL+ +L  C R+  +  G GVH
Sbjct: 611 WNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVH 670

Query: 357 CYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGE 416
            + +K  L+ ++ + NALM+MYSKCG IT++  IF     ++ VSW T++ G+   G   
Sbjct: 671 GWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTH 730

Query: 417 EALQLFLEMQESG--VEPDAITVLAILSACNHAGLVKEAETL 456
               +  +M   G  V+ D +T+L  +  C H   +   + L
Sbjct: 731 GTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKEL 772


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  287 bits (735), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 161/502 (32%), Positives = 275/502 (54%), Gaps = 3/502 (0%)

Query: 76  FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135
           F     A++ F E+   D + WN+II  +TQ       + M+ +M +            +
Sbjct: 47  FGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYV 106

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           +  C       +G+QIH      G F  +VFV  +L+ +Y+K      A  VF+++  R 
Sbjct: 107 LKACGGTSVEGIGKQIHGQTFKYG-FGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRT 165

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
            VSWT++ISG + + +    +++F+ M++  VKP  + L  V+ A   + DL  GK+IHG
Sbjct: 166 VVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHG 225

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
                G +F+  +  +L  MY +    +  AR  F R +  ++++W+++I GY+ +G   
Sbjct: 226 LVTKLGLEFEPDIVISLTTMYAK-RGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGE 284

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           EA+KLF  M  + I  +S+T+ + + +  +   L     +  YI K+    D  +   L+
Sbjct: 285 EAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLI 344

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           +MY+KCGSI  +  +F+ +A +D V W+ +I GYG HG+G+EA+ L+ EM+++GV P+  
Sbjct: 345 DMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDG 404

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           T + +L+AC ++GLVKE   LF ++M +  I    +HY+C VDLLG++G +  A   + +
Sbjct: 405 TFIGLLTACKNSGLVKEGWELF-HLMPDHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMS 463

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGA 555
           MP+KP   +  +L+SAC+IH ++ + E+ A QL   +P N  +Y  LS + + +  W   
Sbjct: 464 MPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTRV 523

Query: 556 EEVWRVMRAKGLSKSYGFSRIE 577
             V  +M  KGL+K  G S IE
Sbjct: 524 ANVRLMMTQKGLNKDLGHSSIE 545



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 113/411 (27%), Positives = 203/411 (49%), Gaps = 7/411 (1%)

Query: 4   KHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADP 63
           K+  +  + +Y  ++  S ++ N      V+KAC    + +  G Q+H    K G  ++ 
Sbjct: 78  KNIVDAPIRMY-MDMQISQVHPNCFTFLYVLKACG-GTSVEGIGKQIHGQTFKYGFGSNV 135

Query: 64  VISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC 123
            + NSL+SMYAKF +   A  +FD++  R  +SW SII+ + QNG  + +L +F+EM  C
Sbjct: 136 FVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQC 195

Query: 124 GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDG-SFELSVFVSTALLDLYSKCHHWL 182
                   L  +++  + + +L  G+ IH LV   G  FE  + +S  L  +Y+K     
Sbjct: 196 NVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVIS--LTTMYAKRGLVE 253

Query: 183 IALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
           +A   F +M   N + W AMISG  ++   +  I LFR M  + ++   +T+   +LA A
Sbjct: 254 VARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASA 313

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
           ++  L   + + GY     +  D  ++  L+ MY +C  +++ AR +F+R   KDVV+WS
Sbjct: 314 QVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCG-SIYLARCVFDRVADKDVVLWS 372

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
            +I GY   G   EA+ L++ M+   + PN  T + +L++C     +  G  +   +   
Sbjct: 373 VMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDH 432

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS-WTTLISGYGFH 412
           G+       + ++++  + G +  ++     M  +  VS W  L+S    H
Sbjct: 433 GIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIH 483


>gi|357132450|ref|XP_003567843.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Brachypodium distachyon]
          Length = 868

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 185/578 (32%), Positives = 310/578 (53%), Gaps = 17/578 (2%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           F E+ L LY + L  +G   +    P V+++C         G ++H   L+ G   +  +
Sbjct: 175 FLEEALDLYHRMLW-AGARPDVYTFPCVLRSCG-GVPDLTMGREVHAHVLRFGLGVEVDV 232

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
            N+L++MYAK    E+A ++FD M   D ISWN++I    +N      LE+F  M     
Sbjct: 233 LNALVTMYAKCGDVEAARKVFDGMSLTDCISWNAMIAGHFENHECEAGLELFLHM----- 287

Query: 126 VLKAELLAGIISLCSQ------IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH 179
            L+ E+   ++++ S       + +L+  ++IHAL +  G F   V    +L+ +YS   
Sbjct: 288 -LEDEVEPNLMTITSVTVASGLLSDLDFAKEIHALAVKRG-FATDVAFCNSLIQMYSSLG 345

Query: 180 HWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLL 239
               A  VF +M  R+ +SWTAMISG   +   D  ++++  M+   V P  VT+   L 
Sbjct: 346 RMGEACTVFSRMETRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDVTVASALA 405

Query: 240 ACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVV 299
           ACA L  L  G  +H  A   GF     ++ AL+ MY + ++ +  A  +F+    KDV+
Sbjct: 406 ACASLGRLDVGIKLHELATSKGFIRYIVVANALVEMYAK-SKIIEKAIEVFKYMPDKDVI 464

Query: 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
            WSS+I G+  +    EA+  F  M L  ++PNSVT +A L++C     L  G  +H ++
Sbjct: 465 SWSSMIAGFCFNHKNFEALYYFRHM-LADVKPNSVTFIAALAACAATGSLRCGKEIHAHV 523

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEAL 419
           ++ G+  +  + NAL+++Y KCG    +   F     +D VSW  +++G+  HG+G+ AL
Sbjct: 524 LRQGIASEGYVPNALLDLYVKCGQTGYAWAQFGAHGTKDVVSWNIMLAGFVAHGHGDIAL 583

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479
             F EM E+G  PD +T +A+L  C+ AG+V +   LF+++ ++  I   ++HYAC VDL
Sbjct: 584 SFFNEMLETGEHPDEVTFVALLCGCSRAGMVSQGWELFHSMTEKYSIVPNLKHYACMVDL 643

Query: 480 LGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANY 539
           L + G++ +    ++ MP+ P   +  +L++ CRIH  +E+ E+ A  ++E EP +A  +
Sbjct: 644 LSRVGRLTEGYNFINRMPITPDAAVWGALLNGCRIHRNIELGELAAKIVLELEPNDAGYH 703

Query: 540 TLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
            LLS + +++G W    +V + MR KGL   YG S +E
Sbjct: 704 VLLSDLYADAGMWAEVSKVRKTMRVKGLEHDYGCSWVE 741



 Score =  198 bits (503), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 143/524 (27%), Positives = 264/524 (50%), Gaps = 32/524 (6%)

Query: 34  IKACAYAQT-HQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYR 92
           ++AC +A   H  FGL+L                N+++SM  +F +   A+++F +MP R
Sbjct: 114 LRACGHADAAHGTFGLRL---------------GNAMLSMLVRFGETWHAWKVFAKMPER 158

Query: 93  DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIH 152
           D  SWN ++  + + GF   +L+++  M   G          ++  C  + +L +GR++H
Sbjct: 159 DVFSWNVMVGGYGKAGFLEEALDLYHRMLWAGARPDVYTFPCVLRSCGGVPDLTMGREVH 218

Query: 153 ALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNY 212
           A V+  G   + V V  AL+ +Y+KC     A +VF+ M + + +SW AMI+G  ++   
Sbjct: 219 AHVLRFG-LGVEVDVLNALVTMYAKCGDVEAARKVFDGMSLTDCISWNAMIAGHFENHEC 277

Query: 213 DTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAAL 272
           + G++LF  M  + V+P  +T+T V +A   L DL   K IH  A   GF  D     +L
Sbjct: 278 EAGLELFLHMLEDEVEPNLMTITSVTVASGLLSDLDFAKEIHALAVKRGFATDVAFCNSL 337

Query: 273 MHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPN 332
           + MY      +  A  +F R + +D + W+++I GY ++G   +A+++++ M +  + P+
Sbjct: 338 IQMYSSLGR-MGEACTVFSRMETRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPD 396

Query: 333 SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFN 392
            VT+ + L++C     L  G+ +H      G    + + NAL+ MY+K   I  + ++F 
Sbjct: 397 DVTVASALAACASLGRLDVGIKLHELATSKGFIRYIVVANALVEMYAKSKIIEKAIEVFK 456

Query: 393 EMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKE 452
            M  +D +SW+++I+G+ F+    EAL  F  M  + V+P+++T +A L+AC   G ++ 
Sbjct: 457 YMPDKDVISWSSMIAGFCFNHKNFEALYYFRHML-ADVKPNSVTFIAALAACAATGSLRC 515

Query: 453 AETLFNNVMKEKKIALAIEHYA--CYVDLLGKSGKIEDACKVVSTMPMKPSTR---ILSS 507
            + +  +V+++    +A E Y     +DL  K G+   A         K       +L+ 
Sbjct: 516 GKEIHAHVLRQ---GIASEGYVPNALLDLYVKCGQTGYAWAQFGAHGTKDVVSWNIMLAG 572

Query: 508 LVSACRIHGRLEVAEMLAHQLIE-AEPENAANYTLLSMVCSESG 550
            V+    HG  ++A    ++++E  E  +   +  L   CS +G
Sbjct: 573 FVA----HGHGDIALSFFNEMLETGEHPDEVTFVALLCGCSRAG 612



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 131/261 (50%), Gaps = 6/261 (2%)

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
           C   R   +G    G+A      F   L  A++ M     E  H A  +F +   +DV  
Sbjct: 104 CEWRRAAEHGLRACGHADAAHGTFGLRLGNAMLSMLVRFGETWH-AWKVFAKMPERDVFS 162

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           W+ ++ GY ++G L EA+ L+ RM      P+  T   +L SC     L+ G  VH +++
Sbjct: 163 WNVMVGGYGKAGFLEEALDLYHRMLWAGARPDVYTFPCVLRSCGGVPDLTMGREVHAHVL 222

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
           + GL  +V + NAL+ MY+KCG + ++ ++F+ M+  D +SW  +I+G+  +   E  L+
Sbjct: 223 RFGLGVEVDVLNALVTMYAKCGDVEAARKVFDGMSLTDCISWNAMIAGHFENHECEAGLE 282

Query: 421 LFLEMQESGVEPDAITVLAILSACNHAGLVKEAE--TLFNNVMKEKKIALAIEHYACYVD 478
           LFL M E  VEP+ +T+ ++  A   +GL+ + +     + +  ++  A  +      + 
Sbjct: 283 LFLHMLEDEVEPNLMTITSVTVA---SGLLSDLDFAKEIHALAVKRGFATDVAFCNSLIQ 339

Query: 479 LLGKSGKIEDACKVVSTMPMK 499
           +    G++ +AC V S M  +
Sbjct: 340 MYSSLGRMGEACTVFSRMETR 360



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 87/194 (44%), Gaps = 4/194 (2%)

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
           +R     G+L +A+ L          P+    +A+   C  +    HGL    +   A  
Sbjct: 69  LRELCAHGELQQALWLLES---SPEPPDEDAYVALFHLCEWRRAAEHGLRACGHADAAHG 125

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
            F + +GNA+++M  + G    + ++F +M  RD  SW  ++ GYG  G+ EEAL L+  
Sbjct: 126 TFGLRLGNAMLSMLVRFGETWHAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALDLYHR 185

Query: 425 MQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSG 484
           M  +G  PD  T   +L +C     +     +  +V++   + + ++     V +  K G
Sbjct: 186 MLWAGARPDVYTFPCVLRSCGGVPDLTMGREVHAHVLR-FGLGVEVDVLNALVTMYAKCG 244

Query: 485 KIEDACKVVSTMPM 498
            +E A KV   M +
Sbjct: 245 DVEAARKVFDGMSL 258


>gi|225451356|ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Vitis vinifera]
          Length = 654

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 155/459 (33%), Positives = 248/459 (54%), Gaps = 34/459 (7%)

Query: 150 QIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS 209
           QIH   I+ GSF    ++   L+ +Y +     +A +VF+QM   + VS+  MI G    
Sbjct: 148 QIHCHAIITGSFYYG-YLQNTLMKIYLENEKMGLAYQVFQQMAAPDAVSFNIMIFGYAKK 206

Query: 210 QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHL- 268
            +    +     M   G+KP   T+  +L+ C  L D + GK++H +    G     +L 
Sbjct: 207 GHNIEALKFLHEMVGLGLKPDEFTMLGLLICCGRLGDAQLGKSVHAWIERRGLIKSSNLI 266

Query: 269 -SAALMHMYCECTE------------------------------ALHPARIIFERTKVKD 297
            + AL+ MY +C E                               L  A   FE    +D
Sbjct: 267 LNNALLDMYVKCKELRIAQSIFNVIVRKDTISWNTMIAGYAKVGNLEIAHNFFEDMPCRD 326

Query: 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHC 357
           +V W+SII GY+Q GD     +LF  M  E I P+ VT++ ++S+      L HG  +H 
Sbjct: 327 LVSWNSIIAGYAQKGDCLMVQRLFENMVAENIWPDFVTIINLVSAAAEIGALHHGRWIHG 386

Query: 358 YIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEE 417
           ++++  +  D  +G+A ++MY KCGSI  +  +F E+  +D   WTT+I+G+ FHGYG +
Sbjct: 387 WVVRMQMKIDAFLGSAFIDMYWKCGSIKRACMVFREVTEKDVTVWTTMITGFAFHGYGSK 446

Query: 418 ALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYV 477
           ALQLF EMQE  V P+ +T +A+L+AC+H+G V +   +FN++ +   I   +EHY C V
Sbjct: 447 ALQLFYEMQEY-VMPNQVTFVAVLTACSHSGFVSQGLRIFNSMKERYGIEPGVEHYGCLV 505

Query: 478 DLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAA 537
           DLLG+SG+  +   V+  MPMKPS  I  +++SACR +G +E+AE+   +L++ EPE   
Sbjct: 506 DLLGRSGRFSEVKDVIEMMPMKPSRSIWGAVLSACRAYGNIEIAEIAGKELLKLEPEKEG 565

Query: 538 NYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
            Y LLS + + SG W  ++++  +M ++G+ K+ G S +
Sbjct: 566 GYVLLSNIYATSGRWKHSDKIREIMESRGVKKTAGCSSV 604



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 107/395 (27%), Positives = 196/395 (49%), Gaps = 36/395 (9%)

Query: 48  LQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQN 107
           +Q+HC A+ +GS     + N+L+ +Y +  K   AYQ+F +M   D +S+N +I  + + 
Sbjct: 147 MQIHCHAIITGSFYYGYLQNTLMKIYLENEKMGLAYQVFQQMAAPDAVSFNIMIFGYAKK 206

Query: 108 GFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELS-VF 166
           G  + +L+   EM   G       + G++  C ++G+ +LG+ +HA +   G  + S + 
Sbjct: 207 GHNIEALKFLHEMVGLGLKPDEFTMLGLLICCGRLGDAQLGKSVHAWIERRGLIKSSNLI 266

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISG------------------CID 208
           ++ ALLD+Y KC    IA  +F  +V ++ +SW  MI+G                  C D
Sbjct: 267 LNNALLDMYVKCKELRIAQSIFNVIVRKDTISWNTMIAGYAKVGNLEIAHNFFEDMPCRD 326

Query: 209 SQNYDTGI-------------DLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
             ++++ I              LF  M  E + P  VT+  ++ A AE+  L +G+ IHG
Sbjct: 327 LVSWNSIIAGYAQKGDCLMVQRLFENMVAENIWPDFVTIINLVSAAAEIGALHHGRWIHG 386

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
           +        D  L +A + MY +C  ++  A ++F     KDV +W+++I G++  G  S
Sbjct: 387 WVVRMQMKIDAFLGSAFIDMYWKCG-SIKRACMVFREVTEKDVTVWTTMITGFAFHGYGS 445

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM-KAGLNFDVSIGNAL 374
           +A++LF  M+ E + PN VT +A+L++C+   F+S GL +   +  + G+   V     L
Sbjct: 446 KALQLFYEMQ-EYVMPNQVTFVAVLTACSHSGFVSQGLRIFNSMKERYGIEPGVEHYGCL 504

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVS-WTTLISG 408
           +++  + G  +    +   M  +   S W  ++S 
Sbjct: 505 VDLLGRSGRFSEVKDVIEMMPMKPSRSIWGAVLSA 539



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 160/359 (44%), Gaps = 43/359 (11%)

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           + P R T   +L A   L  +     IH +A   G  +  +L   LM +Y E  E +  A
Sbjct: 126 IYPNRSTFLFLLQASKFLSQVMQ---IHCHAIITGSFYYGYLQNTLMKIYLE-NEKMGLA 181

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ 346
             +F++    D V ++ +I GY++ G   EA+K    M    ++P+  T+L +L  C R 
Sbjct: 182 YQVFQQMAAPDAVSFNIMIFGYAKKGHNIEALKFLHEMVGLGLKPDEFTMLGLLICCGRL 241

Query: 347 SFLSHGLGVHCYIMKAGL--NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
                G  VH +I + GL  + ++ + NAL++MY KC  +  +  IFN +  +D +SW T
Sbjct: 242 GDAQLGKSVHAWIERRGLIKSSNLILNNALLDMYVKCKELRIAQSIFNVIVRKDTISWNT 301

Query: 405 LISGYG--------------------------FHGYGEEA-----LQLFLEMQESGVEPD 433
           +I+GY                             GY ++       +LF  M    + PD
Sbjct: 302 MIAGYAKVGNLEIAHNFFEDMPCRDLVSWNSIIAGYAQKGDCLMVQRLFENMVAENIWPD 361

Query: 434 AITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY--ACYVDLLGKSGKIEDACK 491
            +T++ ++SA    G +     +   V+   ++ + I+ +  + ++D+  K G I+ AC 
Sbjct: 362 FVTIINLVSAAAEIGALHHGRWIHGWVV---RMQMKIDAFLGSAFIDMYWKCGSIKRACM 418

Query: 492 VVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESG 550
           V   +  K  T + +++++    HG    A  L +++ E    N   +  +   CS SG
Sbjct: 419 VFREVTEKDVT-VWTTMITGFAFHGYGSKALQLFYEMQEYVMPNQVTFVAVLTACSHSG 476



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 116/252 (46%), Gaps = 38/252 (15%)

Query: 281 EALHPARIIFER-TKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAI 339
           E L  A ++F   T   ++ I++++I   S S  L+++   ++ +    I PN  T L +
Sbjct: 79  ENLDMAVLLFRHHTPHPNLYIYNTMISALSLS--LNQSFAFYNSLLSSCIYPNRSTFLFL 136

Query: 340 LSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDF 399
           L +     FLS  + +HC+ +  G  +   + N LM +Y +   +  ++Q+F +MAA D 
Sbjct: 137 LQA---SKFLSQVMQIHCHAIITGSFYYGYLQNTLMKIYLENEKMGLAYQVFQQMAAPDA 193

Query: 400 VSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN-----------HA- 447
           VS+  +I GY   G+  EAL+   EM   G++PD  T+L +L  C            HA 
Sbjct: 194 VSFNIMIFGYAKKGHNIEALKFLHEMVGLGLKPDEFTMLGLLICCGRLGDAQLGKSVHAW 253

Query: 448 ----GLVKEAETLFNNVM-------KEKKIALAIEHYACYVDLL---------GKSGKIE 487
               GL+K +  + NN +       KE +IA +I +     D +          K G +E
Sbjct: 254 IERRGLIKSSNLILNNALLDMYVKCKELRIAQSIFNVIVRKDTISWNTMIAGYAKVGNLE 313

Query: 488 DACKVVSTMPMK 499
            A      MP +
Sbjct: 314 IAHNFFEDMPCR 325



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 74/164 (45%), Gaps = 4/164 (2%)

Query: 45  HFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCF 104
           H G  +H   ++     D  + ++ I MY K    + A  +F E+  +D   W ++I  F
Sbjct: 379 HHGRWIHGWVVRMQMKIDAFLGSAFIDMYWKCGSIKRACMVFREVTEKDVTVWTTMITGF 438

Query: 105 TQNGFYVRSLEMFREMYLCGFVLKAEL-LAGIISLCSQIGELELGRQIHALVIVDGSFEL 163
             +G+  ++L++F EM    +V+  ++    +++ CS  G +  G +I   +      E 
Sbjct: 439 AFHGYGSKALQLFYEMQ--EYVMPNQVTFVAVLTACSHSGFVSQGLRIFNSMKERYGIEP 496

Query: 164 SVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS-WTAMISGC 206
            V     L+DL  +   +     V E M ++   S W A++S C
Sbjct: 497 GVEHYGCLVDLLGRSGRFSEVKDVIEMMPMKPSRSIWGAVLSAC 540


>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 164/533 (30%), Positives = 289/533 (54%), Gaps = 16/533 (3%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           ++H   +K     D  ++  LIS ++   +   A  +F+++   +   +N++I    QN 
Sbjct: 41  EVHAQIIKRNLHNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQNS 100

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
             +++   F +M   G          ++  C+  G L   + IH  V   G F   +FV 
Sbjct: 101 QSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHVEKYGFFG-DLFVP 159

Query: 169 TALLDLYSKCHHWLI--ALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM-QRE 225
            +L+D YSKC    +  A+++F +M  ++ VSW +MI G + + +      LF  M +R+
Sbjct: 160 NSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDEMAERD 219

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLS-AALMHMYCECTEALH 284
            V    +    V          + G+    +         + +S + ++  YC+ T  + 
Sbjct: 220 AVSWNTILDGYV----------KAGEMSQAFNLFEKMPERNVVSWSTMVSGYCK-TGDME 268

Query: 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT 344
            AR++F++   K++V W+ II G+++ G   EA  L+++M    ++P+  TL++IL++C 
Sbjct: 269 MARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACA 328

Query: 345 RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
               L  G  VH  I K  +   V++ NAL++MY+KCG +  +  IFNEM+ RD VSW  
Sbjct: 329 ESGLLVLGKKVHASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMRDLVSWNC 388

Query: 405 LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK 464
           ++ G   HG+GE+A+QLF +MQ+ G +PD +T++AIL AC HAG V +  + FN++ ++ 
Sbjct: 389 MLQGLAMHGHGEKAIQLFSKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFNSMERDH 448

Query: 465 KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEML 524
            I   IEHY C +DLLG+ G++E+A ++V +MPM+P+  I  +L+ ACR+H  + +AE +
Sbjct: 449 GIVPHIEHYGCMIDLLGRGGRLEEAFRLVQSMPMEPNDVIWGTLLGACRVHNAVPLAEKV 508

Query: 525 AHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
             +LI  E  +  NY++LS + + +G+W     +   M++ G+ K  G S IE
Sbjct: 509 LDRLITLEQSDPGNYSMLSNIFAAAGDWNSVANMRLQMKSTGVQKPSGASSIE 561



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 116/437 (26%), Positives = 206/437 (47%), Gaps = 26/437 (5%)

Query: 17  ELHPSGLYSNTAILPSVIKAC---AYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMY 73
           ++  +GL+++    P ++KAC    +  T Q     +HC   K G   D  + NSLI  Y
Sbjct: 111 DMQKNGLFADNFTYPFLLKACNGKGWLPTVQ----MIHCHVEKYGFFGDLFVPNSLIDSY 166

Query: 74  AK--FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAEL 131
           +K        A +LF EM  +D +SWNS+I    + G   R+ ++F EM     V    +
Sbjct: 167 SKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDEMAERDAVSWNTI 226

Query: 132 LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM 191
           L G +         + G    A  + +   E +V   + ++  Y K     +A  +F++M
Sbjct: 227 LDGYV---------KAGEMSQAFNLFEKMPERNVVSWSTMVSGYCKTGDMEMARMLFDKM 277

Query: 192 VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGK 251
             +N V+WT +ISG  +         L+  M+  G+KP   TL  +L ACAE   L  GK
Sbjct: 278 PFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACAESGLLVLGK 337

Query: 252 AIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQS 311
            +H            ++S AL+ MY +C   +  A  IF    ++D+V W+ +++G +  
Sbjct: 338 KVHASIKKIRIKCSVNVSNALVDMYAKCGR-VDKALSIFNEMSMRDLVSWNCMLQGLAMH 396

Query: 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA-GLNFDVSI 370
           G   +A++LFS+M+ E  +P+ VTL+AIL +CT   F+  GL     + +  G+   +  
Sbjct: 397 GHGEKAIQLFSKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFNSMERDHGIVPHIEH 456

Query: 371 GNALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFHG---YGEEALQLFLEMQ 426
              ++++  + G +  + ++   M    + V W TL+     H      E+ L   + ++
Sbjct: 457 YGCMIDLLGRGGRLEEAFRLVQSMPMEPNDVIWGTLLGACRVHNAVPLAEKVLDRLITLE 516

Query: 427 ESGVEPDAITVLAILSA 443
           +S  +P   ++L+ + A
Sbjct: 517 QS--DPGNYSMLSNIFA 531



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/400 (24%), Positives = 195/400 (48%), Gaps = 13/400 (3%)

Query: 149 RQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCID 208
           +++HA  I+  +    ++V+  L+  +S CH   +A+ VF Q+   N   +  +I   + 
Sbjct: 40  KEVHA-QIIKRNLHNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQ 98

Query: 209 SQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHL 268
           +         F  MQ+ G+     T   +L AC     L   + IH +    GF  D  +
Sbjct: 99  NSQSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHVEKYGFFGDLFV 158

Query: 269 SAALMHMYCECTE-ALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327
             +L+  Y +C    ++ A  +F     KD+V W+S+I G  ++GDL  A KLF  M   
Sbjct: 159 PNSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDEM--- 215

Query: 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
             E ++V+   IL    +   +S    +   + +     +V   + +++ Y K G +  +
Sbjct: 216 -AERDAVSWNTILDGYVKAGEMSQAFNLFEKMPER----NVVSWSTMVSGYCKTGDMEMA 270

Query: 388 HQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHA 447
             +F++M  ++ V+WT +ISG+   G  +EA  L+ +M+ +G++PD  T+++IL+AC  +
Sbjct: 271 RMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACAES 330

Query: 448 GLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSS 507
           GL+   + +  ++ K+ +I  ++      VD+  K G+++ A  + + M M+      + 
Sbjct: 331 GLLVLGKKVHASI-KKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMRDLVS-WNC 388

Query: 508 LVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCS 547
           ++    +HG  E A  L  ++ + E       TL++++C+
Sbjct: 389 MLQGLAMHGHGEKAIQLFSKM-QQEGFKPDKVTLIAILCA 427



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 93/204 (45%), Gaps = 3/204 (1%)

Query: 4   KHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADP 63
           K   ++   LY Q +  +GL  +   L S++ ACA +      G ++H +  K       
Sbjct: 295 KGLAKEATTLYNQ-MEAAGLKPDDGTLISILAACAESGLLV-LGKKVHASIKKIRIKCSV 352

Query: 64  VISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC 123
            +SN+L+ MYAK  + + A  +F+EM  RD +SWN ++     +G   +++++F +M   
Sbjct: 353 NVSNALVDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQGLAMHGHGEKAIQLFSKMQQE 412

Query: 124 GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
           GF      L  I+  C+  G ++ G      +  D      +     ++DL  +      
Sbjct: 413 GFKPDKVTLIAILCACTHAGFVDQGLSYFNSMERDHGIVPHIEHYGCMIDLLGRGGRLEE 472

Query: 184 ALRVFEQMVIR-NEVSWTAMISGC 206
           A R+ + M +  N+V W  ++  C
Sbjct: 473 AFRLVQSMPMEPNDVIWGTLLGAC 496



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 10/147 (6%)

Query: 323 RMRLERIEPNSVTL-------LAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           RM L    P  V+        L  L  CT     +H   VH  I+K  L+ D+ +   L+
Sbjct: 6   RMSLPTRAPTWVSTRRLFEEKLQDLHKCTD---FNHIKEVHAQIIKRNLHNDLYVAPKLI 62

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           + +S C  +  +  +FN++   +   + TLI  +  +    +A   F +MQ++G+  D  
Sbjct: 63  SAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQNSQSLKAFATFFDMQKNGLFADNF 122

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMK 462
           T   +L ACN  G +   + +  +V K
Sbjct: 123 TYPFLLKACNGKGWLPTVQMIHCHVEK 149


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 181/582 (31%), Positives = 309/582 (53%), Gaps = 28/582 (4%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHF-GLQLHCTALKSGSDADPVISN 67
           Q+L +   ++  +GL++    L  +I+ C  +    HF GL    +  ++  + + +I N
Sbjct: 16  QSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSP---HFDGLPYAISVFETIQEPNLLIWN 72

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSL---EMFRE----- 119
           ++   +A  S P SA  L+  M     IS   + NC+T   F ++S    + FRE     
Sbjct: 73  TMFRGHALSSDPVSALYLYVCM-----ISLGLLPNCYTF-PFLLKSCAKSKAFREGQQIH 126

Query: 120 --MYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSK 177
             +   G+ L   +   +IS+  Q G LE  R++      D S    V   TAL+  Y+ 
Sbjct: 127 GHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKV-----FDQSSHRDVVSYTALITGYAS 181

Query: 178 CHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIV 237
             +   A ++F+++ I++ VSW AMISG  ++ N    ++LF+ M +  V+P   T+  V
Sbjct: 182 KGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSV 241

Query: 238 LLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKD 297
           + ACA+   +  G+ +H +    GF  +  +  AL+ +Y +C E +  A  +FE    KD
Sbjct: 242 VSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGE-VETACGLFEGLSYKD 300

Query: 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHC 357
           V+ W+++I GY+      EA+ LF  M      PN VT+L+IL +C     +  G  +H 
Sbjct: 301 VISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHV 360

Query: 358 YIMK--AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYG 415
           YI K   G+    S   +L++MY+KCG I ++ Q+F+ +  R   SW  +I G+  HG  
Sbjct: 361 YINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRA 420

Query: 416 EEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC 475
             A  +F  M+++ +EPD IT + +LSAC+H+G++     +F ++ ++ KI   +EHY C
Sbjct: 421 NAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGC 480

Query: 476 YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPEN 535
            +DLLG SG  ++A ++++TM M+P   I  SL+ AC+++  +E+ E  A  LI+ EP+N
Sbjct: 481 MIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANVELGESYAQNLIKIEPKN 540

Query: 536 AANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
             +Y LLS + + +G W    ++  ++  KG+ K  G S IE
Sbjct: 541 PGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIE 582


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 165/531 (31%), Positives = 280/531 (52%), Gaps = 2/531 (0%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           Q+H + +      D  + N L+     F + + +Y LF    + +   +NS+IN F  N 
Sbjct: 31  QIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNIFLYNSLINGFVNNH 90

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
            +  +L++F  +   G  L       ++  C++    +LG  +H+LV+  G F   V   
Sbjct: 91  LFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCG-FNHDVAAM 149

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
           T+LL +YS       A ++F+++  R+ V+WTA+ SG   S  +   IDLF+ M   GVK
Sbjct: 150 TSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVK 209

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
           P    +  VL AC  + DL +G+ I  Y        +  +   L+++Y +C + +  AR 
Sbjct: 210 PDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGK-MEKARS 268

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
           +F+    KD+V WS++I+GY+ +    E ++LF +M  E ++P+  +++  LSSC     
Sbjct: 269 VFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGA 328

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
           L  G      I +     ++ + NAL++MY+KCG++    ++F EM  +D V     ISG
Sbjct: 329 LDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISG 388

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468
              +G+ + +  +F + ++ G+ PD  T L +L  C HAGL+++    FN +     +  
Sbjct: 389 LAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKR 448

Query: 469 AIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
            +EHY C VDL G++G ++DA +++  MPM+P+  +  +L+S CR+    ++AE +  +L
Sbjct: 449 TVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKEL 508

Query: 529 IEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIENE 579
           I  EP NA NY  LS + S  G W  A EV  +M  KG+ K  G+S IE E
Sbjct: 509 IALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELE 559



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 139/508 (27%), Positives = 248/508 (48%), Gaps = 49/508 (9%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V+ H + +TL L+   +   GLY +    P V+KAC  A + +  G+ LH   +K G + 
Sbjct: 87  VNNHLFHETLDLF-LSIRKHGLYLHGFTFPLVLKACTRASSRK-LGIDLHSLVVKCGFNH 144

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D     SL+S+Y+   +   A++LFDE+P R  ++W ++ + +T +G +  ++++F++M 
Sbjct: 145 DVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMV 204

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
             G    +  +  ++S C  +G+L+ G  I    + +   + + FV T L++LY+KC   
Sbjct: 205 EMGVKPDSYFIVQVLSACVHVGDLDSGEWI-VKYMEEMEMQKNSFVRTTLVNLYAKCGKM 263

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             A  VF+ MV ++ V+W+ MI G   +     GI+LF  M +E +KP + ++   L +C
Sbjct: 264 EKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSC 323

Query: 242 AELRDLRNGKAIHGYAYCCGFDF--DHHLSAALMHMYCECTEALHPARIIFERTKVKDVV 299
           A L  L  G+   G +     +F  +  ++ AL+ MY +C  A+     +F+  K KD+V
Sbjct: 324 ASLGALDLGEW--GISLIDRHEFLTNLFMANALIDMYAKCG-AMARGFEVFKEMKEKDIV 380

Query: 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
           I ++ I G +++G +  +  +F +     I P+  T L +L  C           VH  +
Sbjct: 381 IMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGC-----------VHAGL 429

Query: 360 MKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEAL 419
           ++ GL F     NA+  +Y+                 R    +  ++  +G  G  ++A 
Sbjct: 430 IQDGLRF----FNAISCVYA---------------LKRTVEHYGCMVDLWGRAGMLDDAY 470

Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479
           +L  +M    + P+AI   A+LS C    LVK+ + L   V+KE  IAL   +   YV L
Sbjct: 471 RLICDMP---MRPNAIVWGALLSGCR---LVKDTQ-LAETVLKE-LIALEPWNAGNYVQL 522

Query: 480 ---LGKSGKIEDACKVVSTMPMKPSTRI 504
                  G+ ++A +V   M  K   +I
Sbjct: 523 SNIYSVGGRWDEAAEVRDMMNKKGMKKI 550


>gi|15230248|ref|NP_189142.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273633|sp|Q9LJR6.1|PP253_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial; Flags: Precursor
 gi|9293988|dbj|BAB01891.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643452|gb|AEE76973.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 601

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 168/552 (30%), Positives = 294/552 (53%), Gaps = 4/552 (0%)

Query: 27  TAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDAD-PVISNSLISMYAKFSKPESAYQL 85
           T + P  IK        +    Q+H   + +G+  +   IS  LI+   +  +   A ++
Sbjct: 13  TLLCPKRIKFLQSISKLKRHITQIHAFVISTGNLLNGSSISRDLIASCGRIGEISYARKV 72

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL 145
           FDE+P R    +NS+I  +++       L ++ +M        +      I  C     L
Sbjct: 73  FDELPQRGVSVYNSMIVVYSRGKNPDEVLRLYDQMIAEKIQPDSSTFTMTIKACLSGLVL 132

Query: 146 ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISG 205
           E G  +     VD  ++  VFV +++L+LY KC     A  +F +M  R+ + WT M++G
Sbjct: 133 EKGEAVWCKA-VDFGYKNDVFVCSSVLNLYMKCGKMDEAEVLFGKMAKRDVICWTTMVTG 191

Query: 206 CIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFD 265
              +      ++ +R MQ EG    RV +  +L A  +L D + G+++HGY Y  G   +
Sbjct: 192 FAQAGKSLKAVEFYREMQNEGFGRDRVVMLGLLQASGDLGDTKMGRSVHGYLYRTGLPMN 251

Query: 266 HHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR 325
             +  +L+ MY +    +  A  +F R   K  V W S+I G++Q+G  ++A +    M+
Sbjct: 252 VVVETSLVDMYAK-VGFIEVASRVFSRMMFKTAVSWGSLISGFAQNGLANKAFEAVVEMQ 310

Query: 326 LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSIT 385
               +P+ VTL+ +L +C++   L  G  VHCYI+K  +  D     ALM+MYSKCG+++
Sbjct: 311 SLGFQPDLVTLVGVLVACSQVGSLKTGRLVHCYILKRHV-LDRVTATALMDMYSKCGALS 369

Query: 386 SSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
           SS +IF  +  +D V W T+IS YG HG G+E + LFL+M ES +EPD  T  ++LSA +
Sbjct: 370 SSREIFEHVGRKDLVCWNTMISCYGIHGNGQEVVSLFLKMTESNIEPDHATFASLLSALS 429

Query: 446 HAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRIL 505
           H+GLV++ +  F+ ++ + KI  + +HY C +DLL ++G++E+A  ++++  +  +  I 
Sbjct: 430 HSGLVEQGQHWFSVMINKYKIQPSEKHYVCLIDLLARAGRVEEALDMINSEKLDNALPIW 489

Query: 506 SSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAK 565
            +L+S C  H  L V ++ A+++++  P++    TL+S   + +  W    +V ++MR  
Sbjct: 490 VALLSGCINHRNLSVGDIAANKILQLNPDSIGIQTLVSNFFATANKWKEVAKVRKLMRNG 549

Query: 566 GLSKSYGFSRIE 577
            + K  G+S IE
Sbjct: 550 AMEKVPGYSAIE 561


>gi|5262217|emb|CAB45843.1| putative protein [Arabidopsis thaliana]
 gi|7268873|emb|CAB79077.1| putative protein [Arabidopsis thaliana]
          Length = 740

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 168/533 (31%), Positives = 277/533 (51%), Gaps = 39/533 (7%)

Query: 44  QHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINC 103
              G Q+HC AL+ G   D  ++NSL+ +YAK      A  +F EMP  + +SWN +I  
Sbjct: 231 NELGKQIHCLALRLGFGGDLHLNNSLLEIYAKNKDMNGAELIFAEMPEVNVVSWNIMIVG 290

Query: 104 FTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFEL 163
           F Q     +S+E    M   GF         ++  C + G++E GR              
Sbjct: 291 FGQEYRSDKSVEFLTRMRDSGFQPNEVTCISVLGACFRSGDVETGR-------------- 336

Query: 164 SVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQ 223
                                 R+F  +   +  +W AM+SG  + ++Y+  I  FR MQ
Sbjct: 337 ----------------------RIFSSIPQPSVSAWNAMLSGYSNYEHYEEAISNFRQMQ 374

Query: 224 REGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEAL 283
            + +KP + TL+++L +CA LR L  GK IHG         + H+ + L+ +Y EC E +
Sbjct: 375 FQNLKPDKTTLSVILSSCARLRFLEGGKQIHGVVIRTEISKNSHIVSGLIAVYSEC-EKM 433

Query: 284 HPARIIFERTKVK-DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE-PNSVTLLAILS 341
             +  IF+    + D+  W+S+I G+  +   ++A+ LF RM    +  PN  +   +LS
Sbjct: 434 EISECIFDDCINELDIACWNSMISGFRHNMLDTKALILFRRMHQTAVLCPNETSFATVLS 493

Query: 342 SCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS 401
           SC+R   L HG   H  ++K+G   D  +  AL +MY KCG I S+ Q F+ +  ++ V 
Sbjct: 494 SCSRLCSLLHGRQFHGLVVKSGYVSDSFVETALTDMYCKCGEIDSARQFFDAVLRKNTVI 553

Query: 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVM 461
           W  +I GYG +G G+EA+ L+ +M  SG +PD IT +++L+AC+H+GLV+    + +++ 
Sbjct: 554 WNEMIHGYGHNGRGDEAVGLYRKMISSGEKPDGITFVSVLTACSHSGLVETGLEILSSMQ 613

Query: 462 KEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA 521
           +   I   ++HY C VD LG++G++EDA K+    P K S+ +   L+S+CR+HG + +A
Sbjct: 614 RIHGIEPELDHYICIVDCLGRAGRLEDAEKLAEATPYKSSSVLWEILLSSCRVHGDVSLA 673

Query: 522 EMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFS 574
             +A +L+  +P+++A Y LLS   S    W  +  +  +M    + K+ G S
Sbjct: 674 RRVAEKLMRLDPQSSAAYVLLSNTYSSLRQWDDSAALQGLMNKNRVHKTPGQS 726



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 108/388 (27%), Positives = 189/388 (48%), Gaps = 47/388 (12%)

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           N+ ++   K      A ++FD MP RD +SWN++I+   + GF  ++L +++ M   GF+
Sbjct: 42  NAFLTFRCKVGDLGEACEVFDGMPERDVVSWNNMISVLVRKGFEEKALVVYKRMVCDGFL 101

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL-IAL 185
                LA ++S CS++ +   G + H + +  G  + ++FV  ALL +Y+KC   +   +
Sbjct: 102 PSRFTLASVLSACSKVLDGVFGMRCHGVAVKTG-LDKNIFVGNALLSMYAKCGFIVDYGV 160

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLL------ 239
           RVFE +   NEVS+TA+I G          + +FR M  +GV+   V L+ +L       
Sbjct: 161 RVFESLSQPNEVSYTAVIGGLARENKVLEAVQMFRLMCEKGVQVDSVCLSNILSISAPRE 220

Query: 240 ACAELRDLRN---GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK 296
            C  L ++     GK IH  A   GF  D HL+ +L+ +Y +  + ++ A +IF      
Sbjct: 221 GCDSLSEIYGNELGKQIHCLALRLGFGGDLHLNNSLLEIYAK-NKDMNGAELIFAEMPEV 279

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVH 356
           +VV W+ +I G+ Q     ++++  +RMR    +PN VT +++L +C R           
Sbjct: 280 NVVSWNIMIVGFGQEYRSDKSVEFLTRMRDSGFQPNEVTCISVLGACFRS---------- 329

Query: 357 CYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGE 416
                                    G + +  +IF+ +      +W  ++SGY  + + E
Sbjct: 330 -------------------------GDVETGRRIFSSIPQPSVSAWNAMLSGYSNYEHYE 364

Query: 417 EALQLFLEMQESGVEPDAITVLAILSAC 444
           EA+  F +MQ   ++PD  T+  ILS+C
Sbjct: 365 EAISNFRQMQFQNLKPDKTTLSVILSSC 392



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 161/321 (50%), Gaps = 18/321 (5%)

Query: 158 DGSFELSVFVSTALLDLYS---------KCHHWLIALRVFEQMVIRNEVSWTAMISGCID 208
           DG +   VF   ++ D+YS         K      A  VF+ M  R+ VSW  MIS  + 
Sbjct: 22  DGDYARKVFDEMSVRDVYSWNAFLTFRCKVGDLGEACEVFDGMPERDVVSWNNMISVLVR 81

Query: 209 SQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHL 268
               +  + +++ M  +G  P+R TL  VL AC+++ D   G   HG A   G D +  +
Sbjct: 82  KGFEEKALVVYKRMVCDGFLPSRFTLASVLSACSKVLDGVFGMRCHGVAVKTGLDKNIFV 141

Query: 269 SAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER 328
             AL+ MY +C   +     +FE     + V ++++I G ++   + EA+++F  M  + 
Sbjct: 142 GNALLSMYAKCGFIVDYGVRVFESLSQPNEVSYTAVIGGLARENKVLEAVQMFRLMCEKG 201

Query: 329 IEPNSVTLLAILS-SCTRQSFLS--------HGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           ++ +SV L  ILS S  R+   S         G  +HC  ++ G   D+ + N+L+ +Y+
Sbjct: 202 VQVDSVCLSNILSISAPREGCDSLSEIYGNELGKQIHCLALRLGFGGDLHLNNSLLEIYA 261

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           K   +  +  IF EM   + VSW  +I G+G     +++++    M++SG +P+ +T ++
Sbjct: 262 KNKDMNGAELIFAEMPEVNVVSWNIMIVGFGQEYRSDKSVEFLTRMRDSGFQPNEVTCIS 321

Query: 440 ILSACNHAGLVKEAETLFNNV 460
           +L AC  +G V+    +F+++
Sbjct: 322 VLGACFRSGDVETGRRIFSSI 342



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 159/344 (46%), Gaps = 18/344 (5%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           YE+ +  ++Q +    L  +   L  ++ +CA  +  +  G Q+H   +++    +  I 
Sbjct: 363 YEEAISNFRQ-MQFQNLKPDKTTLSVILSSCARLRFLEG-GKQIHGVVIRTEISKNSHIV 420

Query: 67  NSLISMYAKFSKPESAYQLFDE-MPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
           + LI++Y++  K E +  +FD+ +   D   WNS+I+ F  N    ++L +FR M+    
Sbjct: 421 SGLIAVYSECEKMEISECIFDDCINELDIACWNSMISGFRHNMLDTKALILFRRMHQTAV 480

Query: 126 VLKAEL-LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
           +   E   A ++S CS++  L  GRQ H LV+  G    S FV TAL D+Y KC     A
Sbjct: 481 LCPNETSFATVLSSCSRLCSLLHGRQFHGLVVKSGYVSDS-FVETALTDMYCKCGEIDSA 539

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
            + F+ ++ +N V W  MI G   +   D  + L+R M   G KP  +T   VL AC+  
Sbjct: 540 RQFFDAVLRKNTVIWNEMIHGYGHNGRGDEAVGLYRKMISSGEKPDGITFVSVLTACSH- 598

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYC--EC---TEALHPARIIFERTKVK-DV 298
               +G    G          H +   L H  C  +C      L  A  + E T  K   
Sbjct: 599 ----SGLVETGLEILSSMQRIHGIEPELDHYICIVDCLGRAGRLEDAEKLAEATPYKSSS 654

Query: 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSS 342
           V+W  ++      GD+S A ++    +L R++P S     +LS+
Sbjct: 655 VLWEILLSSCRVHGDVSLARRVAE--KLMRLDPQSSAAYVLLSN 696



 Score = 45.4 bits (106), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 31/114 (27%)

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR------------------------- 397
           G+  D  + N L+++Y +CG    + ++F+EM+ R                         
Sbjct: 2   GMKSDTYLCNRLLDLYIECGDGDYARKVFDEMSVRDVYSWNAFLTFRCKVGDLGEACEVF 61

Query: 398 ------DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
                 D VSW  +IS     G+ E+AL ++  M   G  P   T+ ++LSAC+
Sbjct: 62  DGMPERDVVSWNNMISVLVRKGFEEKALVVYKRMVCDGFLPSRFTLASVLSACS 115


>gi|449453035|ref|XP_004144264.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial-like [Cucumis sativus]
          Length = 804

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 172/559 (30%), Positives = 301/559 (53%), Gaps = 10/559 (1%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G   ++ ++ +V++AC      +      H   LK G + D  + +SLI MYAK     S
Sbjct: 195 GGTPDSVLVLTVVEACGELGVLR-LAKSAHGYILKRGIENDRFVDSSLIFMYAKCGSLRS 253

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A  +F+ + YR T +W ++I+ +   G+   +L +F  M        +  +  I+  C+ 
Sbjct: 254 AEIVFENVTYRSTSTWTAMISSYNLGGYLKEALALFVSMQKTEVEPNSVTMRIILRSCTN 313

Query: 142 IGELELGRQIHALVI---VDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
           +  L  G+ +H +VI   +D + +    +   LL+LY+      +  ++  ++  R    
Sbjct: 314 LSLLREGKSVHCVVIKNDLDANLDC---LGPTLLELYAATAKHDLCEKILHEIGGRGIAV 370

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258
           W  +IS           +DLF  MQ++G  P   +L   L A     +L+ G  IHG+  
Sbjct: 371 WNTLISVYAQKGLLKETVDLFVRMQKQGFMPDSFSLASSLSASGNEGELQLGLQIHGHVI 430

Query: 259 CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAM 318
              F  D ++  +L++MY +C   +  A +IF++ + K VV W+S+I G SQ+G  ++A+
Sbjct: 431 KRPF-MDEYVFNSLINMYSKCG-YVDLAYMIFDQMEPKGVVTWNSMISGLSQNGYSTKAI 488

Query: 319 KLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMY 378
            LF  M +   E   V  ++++ +C+   FL  G  +H  ++  G+   + I  AL++MY
Sbjct: 489 SLFDLMYVTCPEIGEVAFVSVIQACSHLGFLEKGKWIHHKLITCGVRKCIFIETALVDMY 548

Query: 379 SKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
           +KCG + ++ ++F+ M+ R  VSW++LIS YG HG   E + LF +M ESG++P+ +TV+
Sbjct: 549 AKCGDLQTAQRVFDNMSERSVVSWSSLISSYGVHGQISEVIFLFSKMLESGIKPNDVTVM 608

Query: 439 AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPM 498
            +LSAC+HAG VKE   LF N M++  I    EH+ C VDLL ++G +++A +++  MP 
Sbjct: 609 NVLSACSHAGCVKEG-MLFFNSMRDFGIEPKREHFVCIVDLLSRAGDLDEAYEIIKLMPF 667

Query: 499 KPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEV 558
            P   I  +L++ CRIH R+++A+ +  +L   + ++  +YTLLS + +  G W    EV
Sbjct: 668 PPGASIWGALLNGCRIHQRMDIAKNIQRELWNIQTDDTGHYTLLSNIYAAGGEWNEFGEV 727

Query: 559 WRVMRAKGLSKSYGFSRIE 577
             +M+  GL K   +S +E
Sbjct: 728 RSMMKGTGLKKVPAYSVVE 746



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 165/548 (30%), Positives = 292/548 (53%), Gaps = 13/548 (2%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           Y++ + LY Q L    + +N+   PSV++AC+        G ++H   +KSG D DPV++
Sbjct: 80  YQEAISLYHQMLSQQ-IQANSYTFPSVLRACS-GFGDLGVGQRVHGRIIKSGFDMDPVVN 137

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
            +L+S+Y +    +SA ++F EMP RD +SW+SII+   +NG     L+ FR M   G  
Sbjct: 138 TALLSVYGELGYLDSARKVFGEMPLRDLVSWSSIISSVVENGEINEGLDAFRCMVSEGGT 197

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
             + L+  ++  C ++G L L +  H  ++  G  E   FV ++L+ +Y+KC     A  
Sbjct: 198 PDSVLVLTVVEACGELGVLRLAKSAHGYILKRG-IENDRFVDSSLIFMYAKCGSLRSAEI 256

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VFE +  R+  +WTAMIS           + LF +MQ+  V+P  VT+ I+L +C  L  
Sbjct: 257 VFENVTYRSTSTWTAMISSYNLGGYLKEALALFVSMQKTEVEPNSVTMRIILRSCTNLSL 316

Query: 247 LRNGKAIHGYAYCCGFDFDHH-LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
           LR GK++H        D +   L   L+ +Y    +     +I+ E    + + +W+++I
Sbjct: 317 LREGKSVHCVVIKNDLDANLDCLGPTLLELYAATAKHDLCEKILHE-IGGRGIAVWNTLI 375

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
             Y+Q G L E + LF RM+ +   P+S +L + LS+   +  L  GL +H +++K    
Sbjct: 376 SVYAQKGLLKETVDLFVRMQKQGFMPDSFSLASSLSASGNEGELQLGLQIHGHVIKRPF- 434

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            D  + N+L+NMYSKCG +  ++ IF++M  +  V+W ++ISG   +GY  +A+ LF  M
Sbjct: 435 MDEYVFNSLINMYSKCGYVDLAYMIFDQMEPKGVVTWNSMISGLSQNGYSTKAISLFDLM 494

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK-EKKIALAIEHYACYVDLLGKSG 484
             +  E   +  ++++ AC+H G +++ + + + ++    +  + IE     VD+  K G
Sbjct: 495 YVTCPEIGEVAFVSVIQACSHLGFLEKGKWIHHKLITCGVRKCIFIE--TALVDMYAKCG 552

Query: 485 KIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTLL 542
            ++ A +V   M  + S    SSL+S+  +HG++     L  +++E+  +P +     +L
Sbjct: 553 DLQTAQRVFDNMSER-SVVSWSSLISSYGVHGQISEVIFLFSKMLESGIKPNDVTVMNVL 611

Query: 543 SMVCSESG 550
           S  CS +G
Sbjct: 612 S-ACSHAG 618



 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 134/452 (29%), Positives = 232/452 (51%), Gaps = 5/452 (1%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           QLH   + +    DP+ S  LI  Y++    +S+  +F      D+  W  ++     NG
Sbjct: 19  QLHAHIIVTALHNDPLPSTKLIESYSQLGDLQSSTSVFRTFHSPDSFMWGVLLKSHVWNG 78

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
            Y  ++ ++ +M        +     ++  CS  G+L +G+++H  +I  G F++   V+
Sbjct: 79  CYQEAISLYHQMLSQQIQANSYTFPSVLRACSGFGDLGVGQRVHGRIIKSG-FDMDPVVN 137

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
           TALL +Y +  +   A +VF +M +R+ VSW+++IS  +++   + G+D FR M  EG  
Sbjct: 138 TALLSVYGELGYLDSARKVFGEMPLRDLVSWSSIISSVVENGEINEGLDAFRCMVSEGGT 197

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
           P  V +  V+ AC EL  LR  K+ HGY    G + D  + ++L+ MY +C  +L  A I
Sbjct: 198 PDSVLVLTVVEACGELGVLRLAKSAHGYILKRGIENDRFVDSSLIFMYAKCG-SLRSAEI 256

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
           +FE    +    W+++I  Y+  G L EA+ LF  M+   +EPNSVT+  IL SCT  S 
Sbjct: 257 VFENVTYRSTSTWTAMISSYNLGGYLKEALALFVSMQKTEVEPNSVTMRIILRSCTNLSL 316

Query: 349 LSHGLGVHCYIMKAGLNFDVS-IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLIS 407
           L  G  VHC ++K  L+ ++  +G  L+ +Y+         +I +E+  R    W TLIS
Sbjct: 317 LREGKSVHCVVIKNDLDANLDCLGPTLLELYAATAKHDLCEKILHEIGGRGIAVWNTLIS 376

Query: 408 GYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIA 467
            Y   G  +E + LF+ MQ+ G  PD+ ++ + LSA  + G ++    +  +V+K   + 
Sbjct: 377 VYAQKGLLKETVDLFVRMQKQGFMPDSFSLASSLSASGNEGELQLGLQIHGHVIKRPFMD 436

Query: 468 LAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
             +  +   +++  K G ++ A  +   M  K
Sbjct: 437 EYV--FNSLINMYSKCGYVDLAYMIFDQMEPK 466


>gi|359476188|ref|XP_002283446.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Vitis vinifera]
          Length = 829

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 176/556 (31%), Positives = 298/556 (53%), Gaps = 8/556 (1%)

Query: 24  YSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAY 83
           YS  +IL  V  AC     +   G Q+H   +K G + +    ++L+ MYAK  + E A+
Sbjct: 101 YSFGSILKGV--ACV---GYVEVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVEDAF 155

Query: 84  QLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIG 143
           ++F  +  R++++WN++I+ + Q G    +  +   M L G  +     A +++L     
Sbjct: 156 EVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLDDPD 215

Query: 144 ELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV-IRNEVSWTAM 202
             +L  Q+HA ++  G       V  A++  YS+C     A RVF+  +  R+ V+W +M
Sbjct: 216 LHKLTTQVHAKIVKHG-LASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLVTWNSM 274

Query: 203 ISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGF 262
           ++  + +   +    LF  MQ  G +P   T T V+ A  E      GK++HG     G 
Sbjct: 275 LAAYLVNNQEEEAFQLFLEMQVLGFEPDIYTYTSVISAAFEGSHQGQGKSLHGLVIKRGL 334

Query: 263 DFDHHLSAALMHMYCEC-TEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
           +F   +S +L+ MY +  ++++  A  IFE  + KD V W+SI+ G+SQSG   +A+K F
Sbjct: 335 EFLVPISNSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNSILTGFSQSGLSEDALKFF 394

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
             MR + +  +     A+L SC+  + L  G  VH  ++K+G   +  + ++L+ MYSKC
Sbjct: 395 ENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKC 454

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
           G I  + + F+       ++W +LI GY  HG G+ AL LF  M++  V+ D IT +A+L
Sbjct: 455 GVIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVL 514

Query: 442 SACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPS 501
           +AC+H GLV+E  +   ++  +  I   +EHYAC +DLLG++G++++A  ++  MP +P 
Sbjct: 515 TACSHIGLVEEGWSFLKSMESDYGIPPRMEHYACMIDLLGRAGRLDEAKALIEAMPFEPD 574

Query: 502 TRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRV 561
             +  +L+ ACR  G +E+A  +A  L+E EPE    Y LLS +      W     + R+
Sbjct: 575 AMVWKTLLGACRTCGDIELASQVASHLLELEPEEHCTYVLLSSMFGHLRRWNEKASIKRL 634

Query: 562 MRAKGLSKSYGFSRIE 577
           M+ +G+ K  G+S IE
Sbjct: 635 MKERGVKKVPGWSWIE 650



 Score =  209 bits (531), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 141/476 (29%), Positives = 236/476 (49%), Gaps = 11/476 (2%)

Query: 51  HCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFY 110
           HC A+KSG+ A    +N++IS YAK  +   A ++F E   RD +SWN++I  F   G +
Sbjct: 22  HCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNF 81

Query: 111 VRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTA 170
             +LE  + M   GF +       I+   + +G +E+G+Q+H++++  G +E +VF  +A
Sbjct: 82  ETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMG-YEGNVFAGSA 140

Query: 171 LLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPT 230
           LLD+Y+KC     A  VF+ + IRN V+W A+ISG     +  T   L   M+ EGV+  
Sbjct: 141 LLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEID 200

Query: 231 RVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIF 290
             T   +L    +    +    +H      G   D  +  A++  Y EC       R+  
Sbjct: 201 DGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFD 260

Query: 291 ERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLS 350
              + +D+V W+S++  Y  +    EA +LF  M++   EP+  T  +++S+    S   
Sbjct: 261 GAIETRDLVTWNSMLAAYLVNNQEEEAFQLFLEMQVLGFEPDIYTYTSVISAAFEGSHQG 320

Query: 351 HGLGVHCYIMKAGLNFDVSIGNALMNMY--SKCGSITSSHQIFNEMAARDFVSWTTLISG 408
            G  +H  ++K GL F V I N+L+ MY  S   S+  +  IF  +  +D VSW ++++G
Sbjct: 321 QGKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNSILTG 380

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK---EKK 465
           +   G  E+AL+ F  M+   V  D     A+L +C+    ++  + +   V+K   E  
Sbjct: 381 FSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFEPN 440

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA 521
             +A    +  + +  K G IEDA K     P K S+   +SL+     HGR ++A
Sbjct: 441 GFVA----SSLIFMYSKCGVIEDARKSFDATP-KDSSIAWNSLIFGYAQHGRGKIA 491



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 120/263 (45%), Gaps = 8/263 (3%)

Query: 276 YCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVT 335
           Y +C E +  A  +F  T  +D V W+++I G+   G+   A++    M+      +  +
Sbjct: 44  YAKCGE-IRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETALEFLKSMKRYGFAVDGYS 102

Query: 336 LLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA 395
             +IL       ++  G  VH  ++K G   +V  G+AL++MY+KC  +  + ++F  + 
Sbjct: 103 FGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVEDAFEVFKSIN 162

Query: 396 ARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAET 455
            R+ V+W  LISGY   G    A  L   M+  GVE D  T   +L+  +   L K    
Sbjct: 163 IRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLDDPDLHKLTTQ 222

Query: 456 LFNNVMKEKKIALAIEHYACYVDLLGKS--GKIEDACKVVSTMPMKPSTRILSSLVSACR 513
           +   ++K     LA +   C   +   S  G IEDA +V             +S+++A  
Sbjct: 223 VHAKIVKH---GLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLVTWNSMLAAYL 279

Query: 514 IHGRLEVA--EMLAHQLIEAEPE 534
           ++ + E A    L  Q++  EP+
Sbjct: 280 VNNQEEEAFQLFLEMQVLGFEPD 302


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 165/573 (28%), Positives = 298/573 (52%), Gaps = 5/573 (0%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           +   + ++           + A + +V+  CA  +     G  +H  A+K   D + V++
Sbjct: 256 WNSMIRVFSDNGDDGAFMPDVATVVTVLPVCA-REREIGVGKGVHGWAVKLSLDKELVVN 314

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           N+L+ MY+K+     +  +F     ++ +SWN+++  F+  G    + ++ R+M      
Sbjct: 315 NALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSED 374

Query: 127 LKAE--LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
           +KA+   +   + +C     L   +++H   +    F     ++ A +  Y+KC     A
Sbjct: 375 VKADEVTILNAVPVCFDESVLPSLKELHCYSLKQ-EFVYDELLANAFVASYAKCGSLSYA 433

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
            RVF  +  +   SW A+I G   S +    +D    M+  G+ P   T+  +L AC++L
Sbjct: 434 QRVFHGIRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKL 493

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI 304
           + LR GK +HG+      + D  +  +++ +Y  C E L   +++F+  +   +V W+++
Sbjct: 494 KSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGE-LCTVQVLFDAMEDNSLVSWNTV 552

Query: 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364
           I G+ Q+G    A+ LF +M L  I+P  ++++ +  +C+    L  G   H Y +K  L
Sbjct: 553 ITGHLQNGFPERALGLFRQMVLYGIQPCGISMMTVFGACSLLPSLRLGREAHAYALKHLL 612

Query: 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424
             +  I  ++++MY+K G+IT S ++FN +  +   SW  +I GYG HG  +EA++LF E
Sbjct: 613 EDNAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAASWNAMIMGYGMHGRAKEAIKLFEE 672

Query: 425 MQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSG 484
           MQ +G  PD +T L +L+ACNH+GL+ E     + +     +   ++HYAC +D+LG++G
Sbjct: 673 MQRTGRNPDDLTFLGVLTACNHSGLLHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAG 732

Query: 485 KIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSM 544
           ++++A +V + M  +P   I +SL+S CRIH  LE+ E +A +L   EPE   NY LLS 
Sbjct: 733 QLDNALRVAAEMSEEPDVGIWNSLLSWCRIHQNLEMGEKVAAKLFVLEPEKPENYVLLSN 792

Query: 545 VCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           + +  G W    +V + M+   L K  G S IE
Sbjct: 793 LYAGLGKWDDVRQVRQRMKEMSLRKDAGCSWIE 825



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 148/554 (26%), Positives = 271/554 (48%), Gaps = 32/554 (5%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
            Y + L ++ + +  + L  +    P VIKACA   +    GL +H   +K+G   D  +
Sbjct: 166 LYHEVLEMFIKMISKTHLLPDNFTFPCVIKACA-GISDVGIGLAVHGLVVKTGLVEDLFV 224

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
            N+L+S Y        A +LFD MP R+ +SWNS+I  F+ NG                F
Sbjct: 225 GNALVSFYGTHGFVSDALKLFDIMPERNLVSWNSMIRVFSDNGDD------------GAF 272

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
           +     +  ++ +C++  E+ +G+ +H    V  S +  + V+ AL+D+YSK    + + 
Sbjct: 273 MPDVATVVTVLPVCAREREIGVGKGVHGWA-VKLSLDKELVVNNALMDMYSKWGCIIDSQ 331

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM--QREGVKPTRVTLTIVLLACAE 243
            +F+    +N VSW  M+ G     +     DL R M    E VK   VT+   +  C +
Sbjct: 332 MIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVCFD 391

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
              L + K +H Y+    F +D  L+ A +  Y +C  +L  A+ +F   + K +  W++
Sbjct: 392 ESVLPSLKELHCYSLKQEFVYDELLANAFVASYAKCG-SLSYAQRVFHGIRSKTLNSWNA 450

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           +I GY+QS D   ++    +M+   + P++ T+ ++LS+C++   L  G  VH +I++  
Sbjct: 451 LIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNW 510

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
           L  D+ +  +++++Y  CG + +   +F+ M     VSW T+I+G+  +G+ E AL LF 
Sbjct: 511 LERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALGLFR 570

Query: 424 EMQESGVEPDAITVLAILSACN-----HAGLVKEAETLFNNVMKEKKIALAIEHYACYVD 478
           +M   G++P  I+++ +  AC+       G    A  L + +     IA +I      +D
Sbjct: 571 QMVLYGIQPCGISMMTVFGACSLLPSLRLGREAHAYALKHLLEDNAFIACSI------ID 624

Query: 479 LLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAAN 538
           +  K+G I  + KV + +  K S    ++++    +HGR + A  L  ++ +    N  +
Sbjct: 625 MYAKNGAITQSSKVFNGLKEK-SAASWNAMIMGYGMHGRAKEAIKLFEEM-QRTGRNPDD 682

Query: 539 YTLLSMV--CSESG 550
            T L ++  C+ SG
Sbjct: 683 LTFLGVLTACNHSG 696



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 120/393 (30%), Positives = 201/393 (51%), Gaps = 27/393 (6%)

Query: 61  ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120
           +D V+   +I+MYA    P+ +   FD +  ++   WN++I+ +++N  Y   LEMF +M
Sbjct: 118 SDDVLCTRIITMYAMCGSPDDSRSAFDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKM 177

Query: 121 YLCGFVLKAELLAG------IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDL 174
                + K  LL        +I  C+ I ++ +G  +H LV+  G  E  +FV  AL+  
Sbjct: 178 -----ISKTHLLPDNFTFPCVIKACAGISDVGIGLAVHGLVVKTGLVE-DLFVGNALVSF 231

Query: 175 YSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTL 234
           Y        AL++F+ M  RN VSW +MI   + S N D G             P   T+
Sbjct: 232 YGTHGFVSDALKLFDIMPERNLVSWNSMIR--VFSDNGDDG----------AFMPDVATV 279

Query: 235 TIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTK 294
             VL  CA  R++  GK +HG+A     D +  ++ ALM MY +    +  +++IF+   
Sbjct: 280 VTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVNNALMDMYSKWG-CIIDSQMIFKLNN 338

Query: 295 VKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRL--ERIEPNSVTLLAILSSCTRQSFLSHG 352
            K+VV W++++ G+S  GD+     L  +M    E ++ + VT+L  +  C  +S L   
Sbjct: 339 NKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVCFDESVLPSL 398

Query: 353 LGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFH 412
             +HCY +K    +D  + NA +  Y+KCGS++ + ++F+ + ++   SW  LI GY   
Sbjct: 399 KELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALIGGYAQS 458

Query: 413 GYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
                +L   L+M+ SG+ PD  TV ++LSAC+
Sbjct: 459 SDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACS 491



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 154/326 (47%), Gaps = 22/326 (6%)

Query: 125 FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
           F+L  E L  ++    +  ++E+GR+IH LV           + T ++ +Y+ C     +
Sbjct: 80  FLLVREALGLLLQASGKRKDIEMGRKIHHLVSGSTRLRSDDVLCTRIITMYAMCGSPDDS 139

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLF-RAMQREGVKPTRVTLTIVLLACAE 243
              F+ +  +N   W A+IS    ++ Y   +++F + + +  + P   T   V+ ACA 
Sbjct: 140 RSAFDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKACAG 199

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCE---CTEALHPARIIFERTKVKDVVI 300
           + D+  G A+HG     G   D  +  AL+  Y      ++AL    I+ ER    ++V 
Sbjct: 200 ISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPER----NLVS 255

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           W+S+IR +S +GD    M            P+  T++ +L  C R+  +  G GVH + +
Sbjct: 256 WNSMIRVFSDNGDDGAFM------------PDVATVVTVLPVCAREREIGVGKGVHGWAV 303

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
           K  L+ ++ + NALM+MYSK G I  S  IF     ++ VSW T++ G+   G       
Sbjct: 304 KLSLDKELVVNNALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFD 363

Query: 421 LFLEM--QESGVEPDAITVLAILSAC 444
           L  +M      V+ D +T+L  +  C
Sbjct: 364 LLRQMLAGSEDVKADEVTILNAVPVC 389


>gi|334186756|ref|NP_193809.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635629|sp|Q9SVH0.2|PP329_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g20770
 gi|332658959|gb|AEE84359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 774

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 168/533 (31%), Positives = 277/533 (51%), Gaps = 39/533 (7%)

Query: 44  QHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINC 103
              G Q+HC AL+ G   D  ++NSL+ +YAK      A  +F EMP  + +SWN +I  
Sbjct: 265 NELGKQIHCLALRLGFGGDLHLNNSLLEIYAKNKDMNGAELIFAEMPEVNVVSWNIMIVG 324

Query: 104 FTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFEL 163
           F Q     +S+E    M   GF         ++  C + G++E GR              
Sbjct: 325 FGQEYRSDKSVEFLTRMRDSGFQPNEVTCISVLGACFRSGDVETGR-------------- 370

Query: 164 SVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQ 223
                                 R+F  +   +  +W AM+SG  + ++Y+  I  FR MQ
Sbjct: 371 ----------------------RIFSSIPQPSVSAWNAMLSGYSNYEHYEEAISNFRQMQ 408

Query: 224 REGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEAL 283
            + +KP + TL+++L +CA LR L  GK IHG         + H+ + L+ +Y EC E +
Sbjct: 409 FQNLKPDKTTLSVILSSCARLRFLEGGKQIHGVVIRTEISKNSHIVSGLIAVYSEC-EKM 467

Query: 284 HPARIIFERTKVK-DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE-PNSVTLLAILS 341
             +  IF+    + D+  W+S+I G+  +   ++A+ LF RM    +  PN  +   +LS
Sbjct: 468 EISECIFDDCINELDIACWNSMISGFRHNMLDTKALILFRRMHQTAVLCPNETSFATVLS 527

Query: 342 SCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS 401
           SC+R   L HG   H  ++K+G   D  +  AL +MY KCG I S+ Q F+ +  ++ V 
Sbjct: 528 SCSRLCSLLHGRQFHGLVVKSGYVSDSFVETALTDMYCKCGEIDSARQFFDAVLRKNTVI 587

Query: 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVM 461
           W  +I GYG +G G+EA+ L+ +M  SG +PD IT +++L+AC+H+GLV+    + +++ 
Sbjct: 588 WNEMIHGYGHNGRGDEAVGLYRKMISSGEKPDGITFVSVLTACSHSGLVETGLEILSSMQ 647

Query: 462 KEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA 521
           +   I   ++HY C VD LG++G++EDA K+    P K S+ +   L+S+CR+HG + +A
Sbjct: 648 RIHGIEPELDHYICIVDCLGRAGRLEDAEKLAEATPYKSSSVLWEILLSSCRVHGDVSLA 707

Query: 522 EMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFS 574
             +A +L+  +P+++A Y LLS   S    W  +  +  +M    + K+ G S
Sbjct: 708 RRVAEKLMRLDPQSSAAYVLLSNTYSSLRQWDDSAALQGLMNKNRVHKTPGQS 760



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 108/388 (27%), Positives = 189/388 (48%), Gaps = 47/388 (12%)

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           N+ ++   K      A ++FD MP RD +SWN++I+   + GF  ++L +++ M   GF+
Sbjct: 76  NAFLTFRCKVGDLGEACEVFDGMPERDVVSWNNMISVLVRKGFEEKALVVYKRMVCDGFL 135

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL-IAL 185
                LA ++S CS++ +   G + H + +  G  + ++FV  ALL +Y+KC   +   +
Sbjct: 136 PSRFTLASVLSACSKVLDGVFGMRCHGVAVKTG-LDKNIFVGNALLSMYAKCGFIVDYGV 194

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLL------ 239
           RVFE +   NEVS+TA+I G          + +FR M  +GV+   V L+ +L       
Sbjct: 195 RVFESLSQPNEVSYTAVIGGLARENKVLEAVQMFRLMCEKGVQVDSVCLSNILSISAPRE 254

Query: 240 ACAELRDLRN---GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK 296
            C  L ++     GK IH  A   GF  D HL+ +L+ +Y +  + ++ A +IF      
Sbjct: 255 GCDSLSEIYGNELGKQIHCLALRLGFGGDLHLNNSLLEIYAK-NKDMNGAELIFAEMPEV 313

Query: 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVH 356
           +VV W+ +I G+ Q     ++++  +RMR    +PN VT +++L +C R           
Sbjct: 314 NVVSWNIMIVGFGQEYRSDKSVEFLTRMRDSGFQPNEVTCISVLGACFRS---------- 363

Query: 357 CYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGE 416
                                    G + +  +IF+ +      +W  ++SGY  + + E
Sbjct: 364 -------------------------GDVETGRRIFSSIPQPSVSAWNAMLSGYSNYEHYE 398

Query: 417 EALQLFLEMQESGVEPDAITVLAILSAC 444
           EA+  F +MQ   ++PD  T+  ILS+C
Sbjct: 399 EAISNFRQMQFQNLKPDKTTLSVILSSC 426



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 161/321 (50%), Gaps = 18/321 (5%)

Query: 158 DGSFELSVFVSTALLDLYS---------KCHHWLIALRVFEQMVIRNEVSWTAMISGCID 208
           DG +   VF   ++ D+YS         K      A  VF+ M  R+ VSW  MIS  + 
Sbjct: 56  DGDYARKVFDEMSVRDVYSWNAFLTFRCKVGDLGEACEVFDGMPERDVVSWNNMISVLVR 115

Query: 209 SQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHL 268
               +  + +++ M  +G  P+R TL  VL AC+++ D   G   HG A   G D +  +
Sbjct: 116 KGFEEKALVVYKRMVCDGFLPSRFTLASVLSACSKVLDGVFGMRCHGVAVKTGLDKNIFV 175

Query: 269 SAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER 328
             AL+ MY +C   +     +FE     + V ++++I G ++   + EA+++F  M  + 
Sbjct: 176 GNALLSMYAKCGFIVDYGVRVFESLSQPNEVSYTAVIGGLARENKVLEAVQMFRLMCEKG 235

Query: 329 IEPNSVTLLAILS-SCTRQSFLS--------HGLGVHCYIMKAGLNFDVSIGNALMNMYS 379
           ++ +SV L  ILS S  R+   S         G  +HC  ++ G   D+ + N+L+ +Y+
Sbjct: 236 VQVDSVCLSNILSISAPREGCDSLSEIYGNELGKQIHCLALRLGFGGDLHLNNSLLEIYA 295

Query: 380 KCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLA 439
           K   +  +  IF EM   + VSW  +I G+G     +++++    M++SG +P+ +T ++
Sbjct: 296 KNKDMNGAELIFAEMPEVNVVSWNIMIVGFGQEYRSDKSVEFLTRMRDSGFQPNEVTCIS 355

Query: 440 ILSACNHAGLVKEAETLFNNV 460
           +L AC  +G V+    +F+++
Sbjct: 356 VLGACFRSGDVETGRRIFSSI 376



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 159/344 (46%), Gaps = 18/344 (5%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           YE+ +  ++Q +    L  +   L  ++ +CA  +  +  G Q+H   +++    +  I 
Sbjct: 397 YEEAISNFRQ-MQFQNLKPDKTTLSVILSSCARLRFLEG-GKQIHGVVIRTEISKNSHIV 454

Query: 67  NSLISMYAKFSKPESAYQLFDE-MPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
           + LI++Y++  K E +  +FD+ +   D   WNS+I+ F  N    ++L +FR M+    
Sbjct: 455 SGLIAVYSECEKMEISECIFDDCINELDIACWNSMISGFRHNMLDTKALILFRRMHQTAV 514

Query: 126 VLKAEL-LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIA 184
           +   E   A ++S CS++  L  GRQ H LV+  G    S FV TAL D+Y KC     A
Sbjct: 515 LCPNETSFATVLSSCSRLCSLLHGRQFHGLVVKSGYVSDS-FVETALTDMYCKCGEIDSA 573

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
            + F+ ++ +N V W  MI G   +   D  + L+R M   G KP  +T   VL AC+  
Sbjct: 574 RQFFDAVLRKNTVIWNEMIHGYGHNGRGDEAVGLYRKMISSGEKPDGITFVSVLTACSH- 632

Query: 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYC--EC---TEALHPARIIFERTKVK-DV 298
               +G    G          H +   L H  C  +C      L  A  + E T  K   
Sbjct: 633 ----SGLVETGLEILSSMQRIHGIEPELDHYICIVDCLGRAGRLEDAEKLAEATPYKSSS 688

Query: 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSS 342
           V+W  ++      GD+S A ++    +L R++P S     +LS+
Sbjct: 689 VLWEILLSSCRVHGDVSLARRVAE--KLMRLDPQSSAAYVLLSN 730



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 117/240 (48%), Gaps = 38/240 (15%)

Query: 238 LLACAELRDLR---NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTK 294
           LL C   RD R   +GK IHG+    G   D +L   L+ +Y EC +  + AR +F+   
Sbjct: 12  LLRC--YRDERCKLSGKVIHGFIVRMGMKSDTYLCNRLLDLYIECGDGDY-ARKVFDEMS 68

Query: 295 VKDVVIWSSIIRGYSQSGDLSEAMKLFS-------------------------------R 323
           V+DV  W++ +    + GDL EA ++F                                R
Sbjct: 69  VRDVYSWNAFLTFRCKVGDLGEACEVFDGMPERDVVSWNNMISVLVRKGFEEKALVVYKR 128

Query: 324 MRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS 383
           M  +   P+  TL ++LS+C++      G+  H   +K GL+ ++ +GNAL++MY+KCG 
Sbjct: 129 MVCDGFLPSRFTLASVLSACSKVLDGVFGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGF 188

Query: 384 ITS-SHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILS 442
           I     ++F  ++  + VS+T +I G        EA+Q+F  M E GV+ D++ +  ILS
Sbjct: 189 IVDYGVRVFESLSQPNEVSYTAVIGGLARENKVLEAVQMFRLMCEKGVQVDSVCLSNILS 248



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 32/141 (22%)

Query: 337 LAILSSCTRQSFLS-HGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA 395
           LA L  C R       G  +H +I++ G+  D  + N L+++Y +CG    + ++F+EM+
Sbjct: 9   LASLLRCYRDERCKLSGKVIHGFIVRMGMKSDTYLCNRLLDLYIECGDGDYARKVFDEMS 68

Query: 396 AR-------------------------------DFVSWTTLISGYGFHGYGEEALQLFLE 424
            R                               D VSW  +IS     G+ E+AL ++  
Sbjct: 69  VRDVYSWNAFLTFRCKVGDLGEACEVFDGMPERDVVSWNNMISVLVRKGFEEKALVVYKR 128

Query: 425 MQESGVEPDAITVLAILSACN 445
           M   G  P   T+ ++LSAC+
Sbjct: 129 MVCDGFLPSRFTLASVLSACS 149


>gi|224096620|ref|XP_002310674.1| predicted protein [Populus trichocarpa]
 gi|222853577|gb|EEE91124.1| predicted protein [Populus trichocarpa]
          Length = 908

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 171/545 (31%), Positives = 292/545 (53%), Gaps = 7/545 (1%)

Query: 26  NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQL 85
           N+  L +++  C      + +G  +H   LK G +++   SN+LI+MY+   + E A  +
Sbjct: 231 NSTTLSTMLAGCGSVDNLK-WGRGIHSLVLKFGWNSNVCASNTLITMYSDAGRCEDAELV 289

Query: 86  FDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL 145
           F  M  +D ISWNS++ C+ Q+G  + +L++   M+              ++ CS     
Sbjct: 290 FQGMVEKDMISWNSMMACYAQDGNCLDALKLLATMFYMRRGANYVTFTSALAACSDPEFA 349

Query: 146 ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISG 205
             G+ +HALVI  G  E +V V  AL+ LY+K    + A +VF+ M  R+ V+W A+I G
Sbjct: 350 TEGKILHALVIHVGLHE-NVIVGNALVTLYAKSGLMIEAKKVFQTMPKRDGVTWNALIGG 408

Query: 206 CIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL-RNGKAIHGYAYCCGFDF 264
             DS+  D  +  F+ M+ EGV    +T++ VL AC    DL  +G  IH +    GF  
Sbjct: 409 HADSEEPDEALKAFKLMREEGVPINYITISNVLGACLAPNDLLEHGMPIHAFIILTGFQS 468

Query: 265 DHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM 324
           D ++  +L+ MY +C + L+ +  IF+R   K+   W++++   +  G + EA+K    M
Sbjct: 469 DEYVQNSLITMYAKCGD-LNSSNNIFDRLTSKNASAWNAMMAANAHHGHMEEALKFLLEM 527

Query: 325 RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSI 384
           R   +  +  +    L++  + + L  G  +H   +K G + +  + +A M+MY KCG I
Sbjct: 528 RRAGVNVDEFSFSECLAAAAKLAILEEGQQLHGLAVKLGCDSNPFVASATMDMYGKCGEI 587

Query: 385 TSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
               +I      R  +SW  L S +  HG+ E+A + F EM   GV+PD +T +++LSAC
Sbjct: 588 DDVLRIIPRPINRSRLSWNILTSSFSRHGFFEKAKETFHEMINLGVKPDHVTFVSLLSAC 647

Query: 445 NHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRI 504
           +H G+V+E    +++++KE  I   I H  C +DLLG+SG+  +A   +  MP+ P+  +
Sbjct: 648 SHGGMVEEGLAYYDSMIKEFGIPAKIGHCVCIIDLLGRSGRFAEAETFIKEMPVSPTDHV 707

Query: 505 LSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRA 564
             SL++AC+ HG LE+       L++ +P + + Y L S +C+ +G W   E+V ++ R 
Sbjct: 708 WRSLLAACKTHGNLELGRKAVENLLKLDPSDDSAYVLYSNICATTGKW---EDVEKIRRQ 764

Query: 565 KGLSK 569
            GL+K
Sbjct: 765 MGLNK 769



 Score =  211 bits (537), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 154/546 (28%), Positives = 275/546 (50%), Gaps = 16/546 (2%)

Query: 11  LHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLI 70
           +++Y++ +   G+  N   + SVI  C   + ++  G Q+    +K G + +  ++NSLI
Sbjct: 116 MNIYRR-MRSEGMSCNDNTMSSVISTCVSLE-NELLGYQVLGHVIKYGLETNVSVANSLI 173

Query: 71  SMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE 130
           SM+  F   E A  +F  M   DTISWNS+I  + +NG    SL  F  M+     + + 
Sbjct: 174 SMFGYFGSVEEACYVFSGMDEHDTISWNSMIAAYIRNGLCKESLRCFSWMFRVHKEINST 233

Query: 131 LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQ 190
            L+ +++ C  +  L+ GR IH+LV+  G +  +V  S  L+ +YS       A  VF+ 
Sbjct: 234 TLSTMLAGCGSVDNLKWGRGIHSLVLKFG-WNSNVCASNTLITMYSDAGRCEDAELVFQG 292

Query: 191 MVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNG 250
           MV ++ +SW +M++      N    + L   M         VT T  L AC++      G
Sbjct: 293 MVEKDMISWNSMMACYAQDGNCLDALKLLATMFYMRRGANYVTFTSALAACSDPEFATEG 352

Query: 251 KAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQ 310
           K +H      G   +  +  AL+ +Y + +  +  A+ +F+    +D V W+++I G++ 
Sbjct: 353 KILHALVIHVGLHENVIVGNALVTLYAK-SGLMIEAKKVFQTMPKRDGVTWNALIGGHAD 411

Query: 311 SGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC-TRQSFLSHGLGVHCYIMKAGLNFDVS 369
           S +  EA+K F  MR E +  N +T+  +L +C      L HG+ +H +I+  G   D  
Sbjct: 412 SEEPDEALKAFKLMREEGVPINYITISNVLGACLAPNDLLEHGMPIHAFIILTGFQSDEY 471

Query: 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429
           + N+L+ MY+KCG + SS+ IF+ + +++  +W  +++    HG+ EEAL+  LEM+ +G
Sbjct: 472 VQNSLITMYAKCGDLNSSNNIFDRLTSKNASAWNAMMAANAHHGHMEEALKFLLEMRRAG 531

Query: 430 VEPDAITVLAILSACNHAGLVKEAETLFNNVMK---EKKIALAIEHYACYVDLLGKSGKI 486
           V  D  +    L+A     +++E + L    +K   +    +A    +  +D+ GK G+I
Sbjct: 532 VNVDEFSFSECLAAAAKLAILEEGQQLHGLAVKLGCDSNPFVA----SATMDMYGKCGEI 587

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE--AEPENAANYTLLSM 544
           +D  +++   P+  S    + L S+   HG  E A+   H++I    +P++    +LLS 
Sbjct: 588 DDVLRIIPR-PINRSRLSWNILTSSFSRHGFFEKAKETFHEMINLGVKPDHVTFVSLLS- 645

Query: 545 VCSESG 550
            CS  G
Sbjct: 646 ACSHGG 651



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 118/438 (26%), Positives = 218/438 (49%), Gaps = 3/438 (0%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           Y +++  +  E+   G+  +   + S++ AC  ++     G+Q+H   +K G  +D  + 
Sbjct: 10  YRESMRFF-NEMRDFGVKPSGIAVASLVTACERSEWMLIEGVQVHGFIVKVGLLSDVFVG 68

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
            SL+ +Y  +     A ++F EM Y++ +SW +++  +   G     + ++R M   G  
Sbjct: 69  TSLVHLYGNYGLAADAMKVFQEMIYKNVVSWTALMVAYVDYGEPSMVMNIYRRMRSEGMS 128

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
                ++ +IS C  +    LG Q+   VI  G  E +V V+ +L+ ++        A  
Sbjct: 129 CNDNTMSSVISTCVSLENELLGYQVLGHVIKYG-LETNVSVANSLISMFGYFGSVEEACY 187

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VF  M   + +SW +MI+  I +      +  F  M R   +    TL+ +L  C  + +
Sbjct: 188 VFSGMDEHDTISWNSMIAAYIRNGLCKESLRCFSWMFRVHKEINSTTLSTMLAGCGSVDN 247

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L+ G+ IH      G++ +   S  L+ MY +       A ++F+    KD++ W+S++ 
Sbjct: 248 LKWGRGIHSLVLKFGWNSNVCASNTLITMYSDAGRC-EDAELVFQGMVEKDMISWNSMMA 306

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
            Y+Q G+  +A+KL + M   R   N VT  + L++C+   F + G  +H  ++  GL+ 
Sbjct: 307 CYAQDGNCLDALKLLATMFYMRRGANYVTFTSALAACSDPEFATEGKILHALVIHVGLHE 366

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           +V +GNAL+ +Y+K G +  + ++F  M  RD V+W  LI G+      +EAL+ F  M+
Sbjct: 367 NVIVGNALVTLYAKSGLMIEAKKVFQTMPKRDGVTWNALIGGHADSEEPDEALKAFKLMR 426

Query: 427 ESGVEPDAITVLAILSAC 444
           E GV  + IT+  +L AC
Sbjct: 427 EEGVPINYITISNVLGAC 444



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 109/397 (27%), Positives = 189/397 (47%), Gaps = 4/397 (1%)

Query: 104 FTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELEL-GRQIHALVIVDGSFE 162
           F + G Y  S+  F EM   G       +A +++ C +   + + G Q+H  ++  G   
Sbjct: 4   FVRAGSYRESMRFFNEMRDFGVKPSGIAVASLVTACERSEWMLIEGVQVHGFIVKVGLLS 63

Query: 163 LSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM 222
             VFV T+L+ LY        A++VF++M+ +N VSWTA++   +D       ++++R M
Sbjct: 64  -DVFVGTSLVHLYGNYGLAADAMKVFQEMIYKNVVSWTALMVAYVDYGEPSMVMNIYRRM 122

Query: 223 QREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEA 282
           + EG+     T++ V+  C  L +   G  + G+    G + +  ++ +L+ M+     +
Sbjct: 123 RSEGMSCNDNTMSSVISTCVSLENELLGYQVLGHVIKYGLETNVSVANSLISMFGYFG-S 181

Query: 283 LHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSS 342
           +  A  +F      D + W+S+I  Y ++G   E+++ FS M     E NS TL  +L+ 
Sbjct: 182 VEEACYVFSGMDEHDTISWNSMIAAYIRNGLCKESLRCFSWMFRVHKEINSTTLSTMLAG 241

Query: 343 CTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSW 402
           C     L  G G+H  ++K G N +V   N L+ MYS  G    +  +F  M  +D +SW
Sbjct: 242 CGSVDNLKWGRGIHSLVLKFGWNSNVCASNTLITMYSDAGRCEDAELVFQGMVEKDMISW 301

Query: 403 TTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462
            ++++ Y   G   +AL+L   M       + +T  + L+AC+      E + L   V+ 
Sbjct: 302 NSMMACYAQDGNCLDALKLLATMFYMRRGANYVTFTSALAACSDPEFATEGKILHALVIH 361

Query: 463 EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
                  I   A  V L  KSG + +A KV  TMP +
Sbjct: 362 VGLHENVIVGNA-LVTLYAKSGLMIEAKKVFQTMPKR 397



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 160/351 (45%), Gaps = 11/351 (3%)

Query: 203 ISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR-DLRNGKAIHGYAYCCG 261
           +SG + + +Y   +  F  M+  GVKP+ + +  ++ AC      L  G  +HG+    G
Sbjct: 1   MSGFVRAGSYRESMRFFNEMRDFGVKPSGIAVASLVTACERSEWMLIEGVQVHGFIVKVG 60

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
              D  +  +L+H+Y     A    + +F+    K+VV W++++  Y   G+ S  M ++
Sbjct: 61  LLSDVFVGTSLVHLYGNYGLAADAMK-VFQEMIYKNVVSWTALMVAYVDYGEPSMVMNIY 119

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
            RMR E +  N  T+ +++S+C        G  V  +++K GL  +VS+ N+L++M+   
Sbjct: 120 RRMRSEGMSCNDNTMSSVISTCVSLENELLGYQVLGHVIKYGLETNVSVANSLISMFGYF 179

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
           GS+  +  +F+ M   D +SW ++I+ Y  +G  +E+L+ F  M     E ++ T+  +L
Sbjct: 180 GSVEEACYVFSGMDEHDTISWNSMIAAYIRNGLCKESLRCFSWMFRVHKEINSTTLSTML 239

Query: 442 SACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC----YVDLLGKSGKIEDACKVVSTMP 497
           + C     +K    + + V+K            C     + +   +G+ EDA  V   M 
Sbjct: 240 AGCGSVDNLKWGRGIHSLVLK-----FGWNSNVCASNTLITMYSDAGRCEDAELVFQGMV 294

Query: 498 MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSE 548
            K      S +    +    L+  ++LA         N   +T     CS+
Sbjct: 295 EKDMISWNSMMACYAQDGNCLDALKLLATMFYMRRGANYVTFTSALAACSD 345


>gi|147801011|emb|CAN60119.1| hypothetical protein VITISV_016375 [Vitis vinifera]
          Length = 711

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 165/529 (31%), Positives = 285/529 (53%), Gaps = 3/529 (0%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G  +H   + +G  +D  ++  LI  Y K     +A  +FD MP R  +SW ++++ ++Q
Sbjct: 170 GHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQ 229

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           NG + ++  +F +M  CG           +  C+ +  L++G Q+    I  G F  ++F
Sbjct: 230 NGRFEKAFVLFSDMRHCGVKANQFTYGSALRACTSLRCLDMGIQVQG-CIQKGRFVENLF 288

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           V +AL+D +SKC     A  +F  M+ R+ VSW AMI G       D    +FR+M R G
Sbjct: 289 VKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGG 348

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           + P   TL  VL A AE   L     IHG     G+     ++  L++ Y +   +L  A
Sbjct: 349 LVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAK-NGSLRSA 407

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLS-EAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           + + +    KD+   +++I GY+  G  S +A+ LF  M    I  + V L ++L+ C  
Sbjct: 408 KDLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICAN 467

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
            +  + G  +H + +K   ++DV++GNAL++MY+K G I  + + F+EM  ++ +SWT+L
Sbjct: 468 LASFALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSL 527

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           ISGY  HGYG  A+ L+ +M+  G +P+ +T L++L AC+H GL  E    FNN++ +  
Sbjct: 528 ISGYAKHGYGHMAVSLYKKMESKGFKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYN 587

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
           I    EHY+C VDL  + G +E+A  ++  + +K +  +  +++ A  I+G + + +  A
Sbjct: 588 IKPRAEHYSCMVDLFARQGLLEEAYNLLCKIDIKHNASLWGAILGASSIYGYMSLGKEAA 647

Query: 526 HQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFS 574
             L   +PEN+ NY +L+ + S +G W  A ++ ++M  +   K+ G+S
Sbjct: 648 SNLFNMQPENSVNYVVLASIYSAAGLWDDAWKIRKLMEERSTKKNAGYS 696



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 107/208 (51%), Gaps = 1/208 (0%)

Query: 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300
           C + +  + G  IH +    GF  D HL+  L+  Y +  + +  AR +F+    + VV 
Sbjct: 161 CIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVI-AARNVFDGMPERSVVS 219

Query: 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           W++++ GYSQ+G   +A  LFS MR   ++ N  T  + L +CT    L  G+ V   I 
Sbjct: 220 WTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTYGSALRACTSLRCLDMGIQVQGCIQ 279

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
           K     ++ + +AL++ +SKCG +  +  +F  M  RD VSW  +I GY   G+ +++  
Sbjct: 280 KGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFC 339

Query: 421 LFLEMQESGVEPDAITVLAILSACNHAG 448
           +F  M   G+ PD  T+ ++L A    G
Sbjct: 340 MFRSMLRGGLVPDCYTLGSVLRASAEGG 367



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 21/164 (12%)

Query: 343 CTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSW 402
           C  +     G  +H +++  G   D+ +   L+  Y K G + ++  +F+ M  R  VSW
Sbjct: 161 CIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSW 220

Query: 403 TTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH----------AGLVKE 452
           T ++SGY  +G  E+A  LF +M+  GV+ +  T  + L AC             G +++
Sbjct: 221 TAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTYGSALRACTSLRCLDMGIQVQGCIQK 280

Query: 453 AETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496
              + N  +K           +  VD   K GK+EDA  +  TM
Sbjct: 281 GRFVENLFVK-----------SALVDFHSKCGKMEDASYLFGTM 313


>gi|302791205|ref|XP_002977369.1| hypothetical protein SELMODRAFT_51693 [Selaginella moellendorffii]
 gi|300154739|gb|EFJ21373.1| hypothetical protein SELMODRAFT_51693 [Selaginella moellendorffii]
          Length = 541

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 170/543 (31%), Positives = 289/543 (53%), Gaps = 10/543 (1%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
               HL+++ L   G+  ++ IL  ++K C+ A      G  +H    + G D +  + N
Sbjct: 7   RSAFHLFRRIL-LQGVPPSSHILVPLLKLCSTA-VFLAVGRTIHAMVAERGLDREIFVGN 64

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           ++I+MY K      A   F  MP R+TISWN+I+  F +NG    +++ F  M   GF+ 
Sbjct: 65  TIITMYRKCGTMADAIDYFRAMPQRNTISWNAIVTAFAENGDREEAMDSFHRMQHEGFLP 124

Query: 128 -KAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
            +   LA + SL  +   ++  R +H L++  G   +   V+ A+L+  SK    + A R
Sbjct: 125 NRVTFLAMLGSLSGKNALIQATR-LHDLLLASG-IAVEPSVANAILNACSKNGGLIAARR 182

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG-VKPTRVTLTIVLLACAELR 245
            F++ + R+ ++WT MI    +S        LFR M  +G + P ++T   +L  C+ L 
Sbjct: 183 AFDRTLHRDIITWTTMIDAYSESGISSAAFQLFRLMLHDGHLVPNKITFVALLKGCSILP 242

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
           + R   AI   +   G++ +  ++  L+  +  C    H AR  FER   KD ++W+ +I
Sbjct: 243 EARFLDAIIRES---GYESNSIIANNLIKAFSRCGSPDH-ARAAFERVISKDTILWTGLI 298

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
             Y++ G   EA++L++ M  E + P+ +T   IL  C R + ++ G  VH  I K+G+ 
Sbjct: 299 TAYAEHGLHDEALRLYALMESEGLAPDRITYTTILDVCARSTAIAEGKLVHAAIAKSGIE 358

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            D ++ N+++NMY KCG +  + + F  +   D +SW+  IS +  HG+G  AL+LF EM
Sbjct: 359 LDTALENSILNMYGKCGKMAETREFFASIRHPDLLSWSIYISSHAHHGHGRRALELFREM 418

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485
             +GVE D    + ILSAC HAGLV E   +F+ ++ +   A   E Y C VDLLG+SG+
Sbjct: 419 VHAGVEADYSAFVNILSACRHAGLVSEGCEIFHRMVADCGFAARSEQYCCLVDLLGRSGR 478

Query: 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV 545
           ++ A +V+  MP +P   +  + +SAC+  G L  A++ A +++E +P + + + +LS  
Sbjct: 479 LDLAEEVLRGMPFRPGQVMWKAFLSACKQQGDLARAKLAADKVLEIDPGSTSAFVVLSNT 538

Query: 546 CSE 548
             E
Sbjct: 539 LKE 541



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 83/150 (55%)

Query: 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368
           +Q GD   A  LF R+ L+ + P+S  L+ +L  C+   FL+ G  +H  + + GL+ ++
Sbjct: 1   AQIGDSRSAFHLFRRILLQGVPPSSHILVPLLKLCSTAVFLAVGRTIHAMVAERGLDREI 60

Query: 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428
            +GN ++ MY KCG++  +   F  M  R+ +SW  +++ +  +G  EEA+  F  MQ  
Sbjct: 61  FVGNTIITMYRKCGTMADAIDYFRAMPQRNTISWNAIVTAFAENGDREEAMDSFHRMQHE 120

Query: 429 GVEPDAITVLAILSACNHAGLVKEAETLFN 458
           G  P+ +T LA+L + +    + +A  L +
Sbjct: 121 GFLPNRVTFLAMLGSLSGKNALIQATRLHD 150


>gi|357162206|ref|XP_003579338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g20730-like [Brachypodium distachyon]
          Length = 558

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 162/531 (30%), Positives = 289/531 (54%), Gaps = 3/531 (0%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           G  +H   + S +  D  +S  L+  YAK     +A ++FD MP+R  +SW ++++ +++
Sbjct: 30  GRSVHHQIIASAAPPDLHMSTKLVIFYAKHGDVAAARKVFDGMPHRSVVSWTAMVSGYSR 89

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           NG    +L++F  M   G          + S C+  G +  G Q+HA V   G F   VF
Sbjct: 90  NGQTREALDLFTLMLASGVRPNQFTYGSVASACAGAGCVRSGEQVHACV-AKGRFVGDVF 148

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG 226
           V +AL+D++ +C   + A+++F +M  ++ V+W A++ G ++   Y   + L  +M R  
Sbjct: 149 VQSALMDMHLRCGSVVDAMQLFAEMERKDVVAWNALLRGLVERAQYGDALGLLPSMLRGA 208

Query: 227 VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286
           + P   T    L AC  +  L N + IH      G+  +  +  +++  Y +C   L  A
Sbjct: 209 MLPDHFTFGSALKACGAVSVLANVELIHTCIIKLGYWGEKVVIGSIIDAYAKC-RGLSSA 267

Query: 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSE-AMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           R+I++     D+V  +++I GYS   + SE AM+LF ++  + +  + V L ++L  C  
Sbjct: 268 RLIYDSICEPDLVSSTALISGYSMDRNHSEDAMELFCKIHRKGLRIDGVLLSSLLGLCAN 327

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
            + L  G  +H Y+ K     DV++ NA+++MY+K G    + + F+EM  R+ VSWT+L
Sbjct: 328 VASLRFGTQIHAYMCKRQPMTDVALDNAVVDMYAKAGEFADARRAFDEMPYRNVVSWTSL 387

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKK 465
           I+  G +G+GE+A+ LF  M E GV+P+ +T L++LSAC H+GL  +    F ++M +  
Sbjct: 388 ITACGKNGFGEDAVSLFDRMVEDGVKPNDVTFLSLLSACGHSGLTSKGMEYFTSMMSKYG 447

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
           I    EHY+  +DLL + G+++DA K+V  + ++P++ +  +++ AC+ HG + + E  A
Sbjct: 448 IDPRAEHYSSAIDLLARGGQLKDAWKLVQNIDIEPNSSMFGAMLGACKTHGSMPLGETAA 507

Query: 526 HQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
             L    PE++ +Y +L+ + +ES  W  A+   ++M      K  G S I
Sbjct: 508 KNLFTIAPESSVHYAVLANMYAESSLWEDAQRTRKLMAETSGGKVAGCSVI 558



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 3/162 (1%)

Query: 338 AILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR 397
           ++L SC   S    G  VH  I+ +    D+ +   L+  Y+K G + ++ ++F+ M  R
Sbjct: 18  SLLQSC--MSCFRRGRSVHHQIIASAAPPDLHMSTKLVIFYAKHGDVAAARKVFDGMPHR 75

Query: 398 DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLF 457
             VSWT ++SGY  +G   EAL LF  M  SGV P+  T  ++ SAC  AG V+  E + 
Sbjct: 76  SVVSWTAMVSGYSRNGQTREALDLFTLMLASGVRPNQFTYGSVASACAGAGCVRSGEQVH 135

Query: 458 NNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
             V K + +       A  +D+  + G + DA ++ + M  K
Sbjct: 136 ACVAKGRFVGDVFVQSA-LMDMHLRCGSVVDAMQLFAEMERK 176



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 94/206 (45%), Gaps = 3/206 (1%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           + ++  E  + L+ + +H  GL  +  +L S++  CA   + + FG Q+H    K     
Sbjct: 291 MDRNHSEDAMELFCK-IHRKGLRIDGVLLSSLLGLCANVASLR-FGTQIHAYMCKRQPMT 348

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D  + N+++ MYAK  +   A + FDEMPYR+ +SW S+I    +NGF   ++ +F  M 
Sbjct: 349 DVALDNAVVDMYAKAGEFADARRAFDEMPYRNVVSWTSLITACGKNGFGEDAVSLFDRMV 408

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
             G          ++S C   G    G +    ++     +      ++ +DL ++    
Sbjct: 409 EDGVKPNDVTFLSLLSACGHSGLTSKGMEYFTSMMSKYGIDPRAEHYSSAIDLLARGGQL 468

Query: 182 LIALRVFEQMVIR-NEVSWTAMISGC 206
             A ++ + + I  N   + AM+  C
Sbjct: 469 KDAWKLVQNIDIEPNSSMFGAMLGAC 494


>gi|302782567|ref|XP_002973057.1| hypothetical protein SELMODRAFT_98472 [Selaginella moellendorffii]
 gi|300159658|gb|EFJ26278.1| hypothetical protein SELMODRAFT_98472 [Selaginella moellendorffii]
          Length = 531

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 170/537 (31%), Positives = 281/537 (52%), Gaps = 36/537 (6%)

Query: 72  MYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAEL 131
           MY K    E A ++FD +  RD +SW S+I+ +  NGF   +L+++++M   G    +  
Sbjct: 1   MYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANNGFCDEALDLYQQMDADGIQPDSIT 60

Query: 132 LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM 191
               +  C+++ +   G+ IHA  IV  + E S FV +AL+++Y++C     A + FE++
Sbjct: 61  FTSALLACTKLAD---GKAIHAR-IVSSNME-SDFVGSALINMYARCGDVSSARQAFEKI 115

Query: 192 VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGK 251
             ++ V WT++++  + + +Y   +DL+  M  EGV    VT    L ACA L  L+ GK
Sbjct: 116 QNKHVVCWTSLMTAYVQTGHYREALDLYGRMDHEGVHADGVTYVTALGACASLGALKEGK 175

Query: 252 AIHGYAYCCGFDFDHHLSAALMHMYCECTE-----------------------------A 282
           AIH     CGF     +  AL+ MY +C E                             +
Sbjct: 176 AIHLRVSECGFQ-SLVVHTALLTMYAKCGELDAARAVFNRLASNVAVQNALVTMYAKCGS 234

Query: 283 LHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSS 342
           L  A+  FE +  KD+V W+++I  Y+Q G   EA+ L+  M  + + P+ VT+ + LS+
Sbjct: 235 LELAKSAFEASGRKDLVSWNAMIGAYAQHGLGREALDLYQTMTSQGVLPDEVTIASSLSA 294

Query: 343 CTRQSFLSHGLGVHCYIMK-AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS 401
           C     L  G  +H  ++K       + +  AL+NMY +CG + ++  +F +M  RD +S
Sbjct: 295 CAISGSLQLGREIHSRVLKNQSFQSSLMVQTALVNMYGRCGRLETARSMFEDMGQRDVLS 354

Query: 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVM 461
           WT + S Y   G+ ++ L L+LEM   G+ P+ IT  +IL  C+HAGL+      F  + 
Sbjct: 355 WTAMTSVYAQQGHADQVLDLYLEMVLHGIRPNEITFTSILVGCSHAGLLARGVECFLEMQ 414

Query: 462 KEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA 521
            E ++    EH+ C VDLLG+SG++ DA  +V +MP +P +    +++ +C+ H   + A
Sbjct: 415 SEHEVVPIREHFLCMVDLLGRSGRLRDAEALVESMPYQPDSVAWLTVLGSCKTHSDADTA 474

Query: 522 EMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIEN 578
           +  A ++ E +PEN + Y+LLS + + +G    A EV   M+  GL K  G S IE 
Sbjct: 475 KRAARRVKELDPENTSLYSLLSSIFTAAGLPQEALEVQLSMKEMGLKKPPGQSLIEK 531


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 173/547 (31%), Positives = 280/547 (51%), Gaps = 41/547 (7%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYA--KFSKPESAYQLFDEMPYRDTISWNSIINCFTQ 106
           QLH  +LK+     P +S+ L+++Y+  K +    A  +FD +  R  I WN+II C+ +
Sbjct: 31  QLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYVE 90

Query: 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF 166
           N F    + +F E+ +  ++     L  +I  C+++G ++ G+QIH L +  G F   VF
Sbjct: 91  NQFSHDGIVLFHEL-VHEYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIG-FGSDVF 148

Query: 167 VSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM-QRE 225
           V  +L+++YSKC     A +VF+ M+ ++ V W ++I G       D  + LF  M +R+
Sbjct: 149 VQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEMPERD 208

Query: 226 GVKPTRVTLTIVLLACAELRDLRN-------------GKAIHGYAYCCGFDFDHHLSAAL 272
               T   L   L  C ++   R                 I+GY      DFD  L    
Sbjct: 209 AFSWT--VLVDGLSKCGKVESARKLFDQMPCRNLVSWNAMINGYMK--SGDFDSALE--- 261

Query: 273 MHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPN 332
                           +F +  + D+V W+ +I GY  +G   +A+K+F  M      P+
Sbjct: 262 ----------------LFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPS 305

Query: 333 SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFN 392
             TL+++LS+ +  + L  G  +H Y+ K G   D  +G +L+ MY+KCG I S+  +F 
Sbjct: 306 HATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFR 365

Query: 393 EMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKE 452
            +  +    WT +I G G HG    AL LFLEM ++G++P+AI  + +L+ACNHAGLV +
Sbjct: 366 AIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDD 425

Query: 453 AETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSAC 512
               F+ +M E KI   +EHY C VD+L ++G +E+A   +  MP+ P+  I  SL+   
Sbjct: 426 GRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGS 485

Query: 513 RIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYG 572
           R HG++++ E  A ++IE  PE    Y LLS + + SG W     V  +M  +G  K  G
Sbjct: 486 RNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPG 545

Query: 573 FSRIENE 579
            S +E++
Sbjct: 546 CSSVEHK 552



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 121/446 (27%), Positives = 207/446 (46%), Gaps = 23/446 (5%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V   F    + L+ + +H      +   LP VIK CA     Q  G Q+H  ALK G  +
Sbjct: 89  VENQFSHDGIVLFHELVHE--YLPDNFTLPCVIKGCARLGVVQE-GKQIHGLALKIGFGS 145

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D  +  SL++MY+K  + + A ++FD M  +D + WNS+I+ + + G    +L++F EM 
Sbjct: 146 DVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEMP 205

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
                    L+ G+    S+ G++E  R+     + D     ++    A+++ Y K   +
Sbjct: 206 ERDAFSWTVLVDGL----SKCGKVESARK-----LFDQMPCRNLVSWNAMINGYMKSGDF 256

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             AL +F QM I + V+W  MI+G   +  +   + +F  M + G +P+  TL  VL A 
Sbjct: 257 DSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAV 316

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           + L  L  G+ IH Y    GF+ D  L  +L+ MY +C   +  A  +F   + K V  W
Sbjct: 317 SGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCG-CIESALTVFRAIQKKKVGHW 375

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361
           ++II G    G  + A+ LF  M    ++PN++  + +L++C     +  G      +M 
Sbjct: 376 TAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMN 435

Query: 362 A-GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA-ARDFVSWTTLISGYGFHG---YGE 416
              +   +     L+++  + G +  +      M  + + V W +L+ G   HG    GE
Sbjct: 436 EYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGE 495

Query: 417 EALQLFLEMQESGVEPDAITVLAILS 442
            A Q  +E     V P+ I    +LS
Sbjct: 496 YAAQRVIE-----VAPETIGCYILLS 516


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 169/530 (31%), Positives = 293/530 (55%), Gaps = 3/530 (0%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           Q+H   +K G D+  ++ NSL+  Y K      A  LF  M  +D +++N+++  +++ G
Sbjct: 160 QVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKEG 219

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
           F   ++ +F +M   GF       A +++   Q+ ++E G+Q+H+ V V  +F  +VFV+
Sbjct: 220 FNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFV-VKCNFVWNVFVA 278

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
            ALLD YSK    + A ++F +M   + +S+  +I+ C  +   +  ++LFR +Q     
Sbjct: 279 NALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFD 338

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
             +     +L   A   +L  G+ IH  A       +  +  +L+ MY +C +    A  
Sbjct: 339 RRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKC-DKFGEANR 397

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
           IF     +  V W+++I GY Q G   + +KLF  M   +I  +S T  +IL +C   + 
Sbjct: 398 IFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATYASILRACANLAS 457

Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISG 408
           L+ G  +H  I+++G   +V  G+AL++MY+KCGSI  + Q+F EM  R+ VSW  LIS 
Sbjct: 458 LTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQEMPVRNSVSWNALISA 517

Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468
           Y  +G G  AL+ F +M  SG++P++++ L+IL AC+H GLV+E    FN++ +  K+  
Sbjct: 518 YAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHCGLVEEGLQYFNSMTQVYKLEP 577

Query: 469 AIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528
             EHYA  VD+L +SG+ ++A K+++ MP +P   + SS++++CRIH   E+A   A QL
Sbjct: 578 RREHYASMVDMLCRSGRFDEAEKLMARMPFEPDEIMWSSILNSCRIHKNQELAIKAADQL 637

Query: 529 IEAEP-ENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
              +   +AA Y  +S + + +G W    +V + +R +G+ K   +S +E
Sbjct: 638 FNMKGLRDAAPYVSMSNIYAAAGEWDSVGKVKKALRERGIRKVPAYSWVE 687



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 125/417 (29%), Positives = 206/417 (49%), Gaps = 39/417 (9%)

Query: 46  FGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFT 105
           FG Q+H   +K     +  ++N+L+  Y+K  +   A +LF EMP  D IS+N +I C  
Sbjct: 258 FGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCA 317

Query: 106 QNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSV 165
            NG    SLE+FRE+    F  +    A ++S+ +    LE+GRQIH+  IV  +    V
Sbjct: 318 WNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAIS-EV 376

Query: 166 FVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
            V  +L+D+Y+KC  +  A R+F  +  ++ V WTA+ISG +    ++ G+ LF  M R 
Sbjct: 377 LVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRA 436

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
            +     T   +L ACA L  L  GK +H      G   +    +AL+ MY +C  ++  
Sbjct: 437 KIGADSATYASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCG-SIKE 495

Query: 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345
           A  +F+   V++ V W+++I  Y+Q+GD   A++ F +M    ++PNSV+ L+IL +C+ 
Sbjct: 496 ALQMFQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACS- 554

Query: 346 QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL 405
                     HC +++ GL +                   S  Q++     R+   + ++
Sbjct: 555 ----------HCGLVEEGLQY-----------------FNSMTQVYKLEPRRE--HYASM 585

Query: 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC----NHAGLVKEAETLFN 458
           +      G  +EA +L   M     EPD I   +IL++C    N    +K A+ LFN
Sbjct: 586 VDMLCRSGRFDEAEKLMARMP---FEPDEIMWSSILNSCRIHKNQELAIKAADQLFN 639



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 126/490 (25%), Positives = 247/490 (50%), Gaps = 9/490 (1%)

Query: 64  VISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC 123
           + +N++I  Y K     +A  LFD M  R  ++W  +I  + Q+  ++ +  +F +M   
Sbjct: 74  ISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRH 133

Query: 124 GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183
           G V     LA ++S  ++   +    Q+H  V+  G ++ ++ V  +LLD Y K     +
Sbjct: 134 GMVPDHITLATLLSGFTEFESVNEVAQVHGHVVKVG-YDSTLMVCNSLLDSYCKTRSLGL 192

Query: 184 ALRVFEQMVIRNEVSWTAMISG-CIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242
           A  +F+ M  ++ V++ A+++G   +  N+D  I+LF  MQ  G +P+  T   VL A  
Sbjct: 193 ACHLFKHMAEKDNVTFNALLTGYSKEGFNHD-AINLFFKMQDLGFRPSEFTFAAVLTAGI 251

Query: 243 ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWS 302
           ++ D+  G+ +H +   C F ++  ++ AL+  Y +    +   ++ +E  +V D + ++
Sbjct: 252 QMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEV-DGISYN 310

Query: 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362
            +I   + +G + E+++LF  ++  R +        +LS       L  G  +H   +  
Sbjct: 311 VLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVT 370

Query: 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLF 422
               +V +GN+L++MY+KC     +++IF ++A +  V WT LISGY   G  E+ L+LF
Sbjct: 371 DAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLF 430

Query: 423 LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGK 482
           +EM  + +  D+ T  +IL AC +   +   + L + +++   ++      A  VD+  K
Sbjct: 431 VEMHRAKIGADSATYASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSA-LVDMYAK 489

Query: 483 SGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYT 540
            G I++A ++   MP++ S    ++L+SA   +G    A     Q+I +  +P N+ ++ 
Sbjct: 490 CGSIKEALQMFQEMPVRNSVS-WNALISAYAQNGDGGHALRSFEQMIHSGLQP-NSVSFL 547

Query: 541 LLSMVCSESG 550
            +   CS  G
Sbjct: 548 SILCACSHCG 557



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 108/449 (24%), Positives = 209/449 (46%), Gaps = 24/449 (5%)

Query: 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWT 200
           Q G+L   R++      D     +V  +  ++  Y K  +   A  +F+ MV R+ V+WT
Sbjct: 54  QRGDLGAARKL-----FDEMPHKNVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWT 108

Query: 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260
            +I G      +    +LF  M R G+ P  +TL  +L    E   +     +HG+    
Sbjct: 109 MLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVKV 168

Query: 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320
           G+D    +  +L+  YC+ T +L  A  +F+    KD V +++++ GYS+ G   +A+ L
Sbjct: 169 GYDSTLMVCNSLLDSYCK-TRSLGLACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINL 227

Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380
           F +M+     P+  T  A+L++  +   +  G  VH +++K    ++V + NAL++ YSK
Sbjct: 228 FFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSK 287

Query: 381 CGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAI 440
              I  + ++F EM   D +S+  LI+   ++G  EE+L+LF E+Q +  +        +
Sbjct: 288 HDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATL 347

Query: 441 LSACNHA-----GLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           LS   ++     G    ++ +  + + E  +  ++      VD+  K  K  +A ++ + 
Sbjct: 348 LSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSL------VDMYAKCDKFGEANRIFAD 401

Query: 496 MPMK---PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNW 552
           +  +   P T ++S  V        L++   +    I A+   +A Y  +   C+   + 
Sbjct: 402 LAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGAD---SATYASILRACANLASL 458

Query: 553 -LGAEEVWRVMRAKGLSKSYGFSRIENEY 580
            LG +   R++R+  LS  +  S + + Y
Sbjct: 459 TLGKQLHSRIIRSGCLSNVFSGSALVDMY 487



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 109/216 (50%), Gaps = 3/216 (1%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V K  +E  L L+  E+H + + +++A   S+++ACA   +    G QLH   ++SG  +
Sbjct: 418 VQKGLHEDGLKLF-VEMHRAKIGADSATYASILRACANLASLT-LGKQLHSRIIRSGCLS 475

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           +    ++L+ MYAK    + A Q+F EMP R+++SWN++I+ + QNG    +L  F +M 
Sbjct: 476 NVFSGSALVDMYAKCGSIKEALQMFQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQMI 535

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
             G    +     I+  CS  G +E G Q    +      E       +++D+  +   +
Sbjct: 536 HSGLQPNSVSFLSILCACSHCGLVEEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSGRF 595

Query: 182 LIALRVFEQMVIR-NEVSWTAMISGCIDSQNYDTGI 216
             A ++  +M    +E+ W+++++ C   +N +  I
Sbjct: 596 DEAEKLMARMPFEPDEIMWSSILNSCRIHKNQELAI 631


>gi|449489376|ref|XP_004158293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g69350, mitochondrial-like
           [Cucumis sativus]
          Length = 804

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 172/559 (30%), Positives = 301/559 (53%), Gaps = 10/559 (1%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G   ++ ++ +V++AC      +      H   LK G + D  + +SLI MYAK     S
Sbjct: 195 GGTPDSVLVLTVVEACGELGVLR-LAKSAHGYILKRGIENDRFVDSSLIFMYAKCGSLRS 253

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A  +F+ + YR T +W ++I+ +   G+   +L +F  M        +  +  I+  C+ 
Sbjct: 254 AEIVFENVTYRSTSTWTAMISSYNLGGYLKEALALFVSMQKTEVEPNSVTMRIILRSCTN 313

Query: 142 IGELELGRQIHALVI---VDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS 198
           +  L  G+ +H +VI   +D + +    +   LL+LY+      +  ++  ++  R    
Sbjct: 314 LSLLREGKSVHCVVIKNDLDANLDC---LGPTLLELYAATAKHDLCEKILHEIGGRGIAV 370

Query: 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258
           W  +IS           +DLF  MQ++G  P   +L   L A     +L+ G  IHG+  
Sbjct: 371 WNTLISVYAQKGLLKETVDLFVRMQKQGFMPDSFSLASSLSASGNEGELQLGLQIHGHVI 430

Query: 259 CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAM 318
              F  D ++  +L++MY +C   +  A +IF++ + K VV W+S+I G SQ+G  ++A+
Sbjct: 431 KRPF-MDEYVFNSLINMYSKCG-YVDLAYMIFDQMEPKGVVTWNSMISGLSQNGYSTKAI 488

Query: 319 KLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMY 378
            LF  M +   E   V  ++++ +C+   FL  G  +H  ++  G+   + I  AL++MY
Sbjct: 489 SLFDLMYVTCPEIGEVAFVSVIQACSHLGFLEKGKWIHHKLITCGVRKCIFIETALVDMY 548

Query: 379 SKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438
           +KCG + ++ ++F+ M+ R  VSW++LIS YG HG   E + LF +M ESG++P+ +TV+
Sbjct: 549 AKCGDLQTAQRVFDNMSERSVVSWSSLISSYGVHGQISEVIFLFSKMLESGIKPNDVTVM 608

Query: 439 AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPM 498
            +LSAC+HAG VKE   LF N M++  I    EH+ C VDLL ++G +++A +++  MP 
Sbjct: 609 NVLSACSHAGCVKEG-MLFFNSMRDFGIEPKREHFVCIVDLLSRAGDLDEAYEIIKLMPF 667

Query: 499 KPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEV 558
            P   I  +L++ CRIH R+++A+ +  +L   + ++  +YTLLS + +  G W    EV
Sbjct: 668 PPGASIWGALLNGCRIHQRMDIAKNIQRELWNIQTDDTGHYTLLSNIYAAGGEWNEFGEV 727

Query: 559 WRVMRAKGLSKSYGFSRIE 577
             +M+  GL K   +S +E
Sbjct: 728 RSMMKGTGLKKVPAYSVVE 746



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 165/548 (30%), Positives = 292/548 (53%), Gaps = 13/548 (2%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           Y++ + LY Q L    + +N+   PSV++AC+        G ++H   +KSG D DPV++
Sbjct: 80  YQEAISLYHQMLSQQ-IQANSYTFPSVLRACS-GFGDLGVGQRVHGRIIKSGFDMDPVVN 137

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
            +L+S+Y +    +SA ++F EMP RD +SW+SII+   +NG     L+ FR M   G  
Sbjct: 138 TALLSVYGELGYLDSARKVFGEMPLRDLVSWSSIISSVVENGEINEGLDAFRCMVSEGGT 197

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
             + L+  ++  C ++G L L +  H  ++  G  E   FV ++L+ +Y+KC     A  
Sbjct: 198 PDSVLVLTVVEACGELGVLRLAKSAHGYILKRG-IENDRFVDSSLIFMYAKCGSLRSAEI 256

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
           VFE +  R+  +WTAMIS           + LF +MQ+  V+P  VT+ I+L +C  L  
Sbjct: 257 VFENVTYRSTSTWTAMISSYNLGGYLKEALALFVSMQKTEVEPNSVTMRIILRSCTNLSL 316

Query: 247 LRNGKAIHGYAYCCGFDFDHH-LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
           LR GK++H        D +   L   L+ +Y    +     +I+ E    + + +W+++I
Sbjct: 317 LREGKSVHCVVIKNDLDANLDCLGPTLLELYAATAKHDLCEKILHE-IGGRGIAVWNTLI 375

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365
             Y+Q G L E + LF RM+ +   P+S +L + LS+   +  L  GL +H +++K    
Sbjct: 376 SVYAQKGLLKETVDLFVRMQKQGFMPDSFSLASSLSASGNEGELQLGLQIHGHVIKRPF- 434

Query: 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425
            D  + N+L+NMYSKCG +  ++ IF++M  +  V+W ++ISG   +GY  +A+ LF  M
Sbjct: 435 MDEYVFNSLINMYSKCGYVDLAYMIFDQMEPKGVVTWNSMISGLSQNGYSTKAISLFDLM 494

Query: 426 QESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK-EKKIALAIEHYACYVDLLGKSG 484
             +  E   +  ++++ AC+H G +++ + + + ++    +  + IE     VD+  K G
Sbjct: 495 YVTCPEIGEVAFVSVIQACSHLGFLEKGKWIHHKLITCGVRKCIFIE--TALVDMYAKCG 552

Query: 485 KIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA--EPENAANYTLL 542
            ++ A +V   M  + S    SSL+S+  +HG++     L  +++E+  +P +     +L
Sbjct: 553 DLQTAQRVFDNMSER-SVVSWSSLISSYGVHGQISEVIFLFSKMLESGIKPNDVTVMNVL 611

Query: 543 SMVCSESG 550
           S  CS +G
Sbjct: 612 S-ACSHAG 618



 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 134/452 (29%), Positives = 232/452 (51%), Gaps = 5/452 (1%)

Query: 49  QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108
           QLH   + +    DP+ S  LI  Y++    +S+  +F      D+  W  ++     NG
Sbjct: 19  QLHAHIIVTALHNDPLPSTKLIESYSQLGDLQSSTSVFRTFHSPDSFMWGVLLKSHVWNG 78

Query: 109 FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168
            Y  ++ ++ +M        +     ++  CS  G+L +G+++H  +I  G F++   V+
Sbjct: 79  CYQEAISLYHQMLSQQIQANSYTFPSVLRACSGFGDLGVGQRVHGRIIKSG-FDMDPVVN 137

Query: 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228
           TALL +Y +  +   A +VF +M +R+ VSW+++IS  +++   + G+D FR M  EG  
Sbjct: 138 TALLSVYGELGYLDSARKVFGEMPLRDLVSWSSIISSVVENGEINEGLDAFRCMVSEGGT 197

Query: 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288
           P  V +  V+ AC EL  LR  K+ HGY    G + D  + ++L+ MY +C  +L  A I
Sbjct: 198 PDSVLVLTVVEACGELGVLRLAKSAHGYILKRGIENDRFVDSSLIFMYAKCG-SLRSAEI 256

Query: 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348
           +FE    +    W+++I  Y+  G L EA+ LF  M+   +EPNSVT+  IL SCT  S 
Sbjct: 257 VFENVTYRSTSTWTAMISSYNLGGYLKEALALFVSMQKTEVEPNSVTMRIILRSCTNLSL 316

Query: 349 LSHGLGVHCYIMKAGLNFDVS-IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLIS 407
           L  G  VHC ++K  L+ ++  +G  L+ +Y+         +I +E+  R    W TLIS
Sbjct: 317 LREGKSVHCVVIKNDLDANLDCLGPTLLELYAATAKHDLCEKILHEIGGRGIAVWNTLIS 376

Query: 408 GYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIA 467
            Y   G  +E + LF+ MQ+ G  PD+ ++ + LSA  + G ++    +  +V+K   + 
Sbjct: 377 VYAQKGLLKETVDLFVRMQKQGFMPDSFSLASSLSASGNEGELQLGLQIHGHVIKRPFMD 436

Query: 468 LAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
             +  +   +++  K G ++ A  +   M  K
Sbjct: 437 EYV--FNSLINMYSKCGYVDLAYMIFDQMEPK 466


>gi|302803540|ref|XP_002983523.1| hypothetical protein SELMODRAFT_118230 [Selaginella moellendorffii]
 gi|300148766|gb|EFJ15424.1| hypothetical protein SELMODRAFT_118230 [Selaginella moellendorffii]
          Length = 506

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 160/499 (32%), Positives = 273/499 (54%), Gaps = 12/499 (2%)

Query: 72  MYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAEL 131
           M+AK    + + ++FD+  ++D + WNS+I  ++Q+G    ++E+F+ M      ++   
Sbjct: 1   MFAKCGSLKESREVFDDCRWKDVLFWNSMIVAYSQSGHPREAIELFKSMGSSSPPVEPNA 60

Query: 132 LA--GIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189
           +    +++ CS +  LE G+++H   +VD  F+       +L+++Y+KC     A  VF+
Sbjct: 61  ITYTTVLAACSAVEALEQGKEVHRQ-MVDAGFQFDAAAENSLVNMYAKCGSITEAREVFD 119

Query: 190 QMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249
            M  R  VSWT +IS  +   +    +DL+R M  EGV+P  +T   VL AC+ L  L  
Sbjct: 120 GMKQRTVVSWTGIISAYVRKGHPREALDLYRKMGSEGVEPNGITFASVLSACSSLGALEE 179

Query: 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309
           GKA+H      G+  D  ++ AL+ +Y +C  ++  AR +F+R K+++VV W+++I  Y+
Sbjct: 180 GKAVHAQMKAAGYKPDLAVANALVSLYGKCG-SVDSARKVFDRMKIRNVVSWTAMISSYA 238

Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA--GLNFD 367
                 EA++L+  M    + PN+VTL ++LS+C        G  VH  +     GL  D
Sbjct: 239 HHRHSEEAIQLYKAMD---VAPNAVTLASVLSACASLGNAEEGRAVHEKLASTTTGLATD 295

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
             + NAL+NMY+KCG   ++ +IF+ MA RD +SW+TLI+ Y  HG G EA+++   M+ 
Sbjct: 296 EVLQNALLNMYAKCGDGDAARKIFDAMAVRDTMSWSTLIAAYTQHGRGGEAVEMCRSMEL 355

Query: 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487
            GV+  +     +L+AC+ AGL++ A   F  + ++      +E Y C   +LG++G++ 
Sbjct: 356 EGVQASSFIYGTVLTACSQAGLLESARHYFGCLTRDCGAPAKLEDYVCMATVLGRAGRLA 415

Query: 488 DACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCS 547
           +A ++++ MP +        L++AC+ H  +E    +A  L   EP N A Y LLS +  
Sbjct: 416 EAEELLAVMPFEAEFVAWMGLLAACKAHNDVERGARVAEVLFRLEPLNEAPYVLLSNIYV 475

Query: 548 ESGNWLGAEEVWRVMRAKG 566
            +G     EE  RV R  G
Sbjct: 476 AAGR---QEEAARVRRKMG 491



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 125/427 (29%), Positives = 206/427 (48%), Gaps = 28/427 (6%)

Query: 6   FYEQTLHLYKQELHP--------------SGLYSNTAILPSVIKACAYAQTHQHFGLQLH 51
           F+   +  Y Q  HP                +  N     +V+ AC+  +  +  G ++H
Sbjct: 25  FWNSMIVAYSQSGHPREAIELFKSMGSSSPPVEPNAITYTTVLAACSAVEALEQ-GKEVH 83

Query: 52  CTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYV 111
              + +G   D    NSL++MYAK      A ++FD M  R  +SW  II+ + + G   
Sbjct: 84  RQMVDAGFQFDAAAENSLVNMYAKCGSITEAREVFDGMKQRTVVSWTGIISAYVRKGHPR 143

Query: 112 RSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTAL 171
            +L+++R+M   G        A ++S CS +G LE G+ +HA +   G ++  + V+ AL
Sbjct: 144 EALDLYRKMGSEGVEPNGITFASVLSACSSLGALEEGKAVHAQMKAAG-YKPDLAVANAL 202

Query: 172 LDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTR 231
           + LY KC     A +VF++M IRN VSWTAMIS     ++ +  I L++AM    V P  
Sbjct: 203 VSLYGKCGSVDSARKVFDRMKIRNVVSWTAMISSYAHHRHSEEAIQLYKAMD---VAPNA 259

Query: 232 VTLTIVLLACAELRDLRNGKAIHGY--AYCCGFDFDHHLSAALMHMYCECTEALHPARII 289
           VTL  VL ACA L +   G+A+H    +   G   D  L  AL++MY +C +    AR I
Sbjct: 260 VTLASVLSACASLGNAEEGRAVHEKLASTTTGLATDEVLQNALLNMYAKCGDG-DAARKI 318

Query: 290 FERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFL 349
           F+   V+D + WS++I  Y+Q G   EA+++   M LE ++ +S     +L++C++   L
Sbjct: 319 FDAMAVRDTMSWSTLIAAYTQHGRGGEAVEMCRSMELEGVQASSFIYGTVLTACSQAGLL 378

Query: 350 S---HGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA-ARDFVSWTTL 405
               H  G  C     G    +     +  +  + G +  + ++   M    +FV+W  L
Sbjct: 379 ESARHYFG--CLTRDCGAPAKLEDYVCMATVLGRAGRLAEAEELLAVMPFEAEFVAWMGL 436

Query: 406 ISGYGFH 412
           ++    H
Sbjct: 437 LAACKAH 443


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 171/571 (29%), Positives = 294/571 (51%), Gaps = 4/571 (0%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           +E    L+++ L   G   N  +L +++K  A A         +H  A K G D +  + 
Sbjct: 143 FEAAAALFRR-LRWEGHEVNQFVLTTMLK-LAIAMDAAGLAGGVHSCAWKLGHDHNAFVG 200

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           + LI  Y+  S    A  +F+ +  +D + W ++++C+++N     +  +F +M + G  
Sbjct: 201 SGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCK 260

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
                L  ++     +  + LG+ IH   I   + +    V  ALLD+Y+KC     A  
Sbjct: 261 PNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLN-DTEPHVGGALLDMYAKCGDIKDARL 319

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
            FE +   + +  + MIS    S   +   +LF  + R  V P   +L+ VL AC  +  
Sbjct: 320 AFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQ 379

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L  GK IH +A   G + D  +  ALM  Y +C + +  +  IF   +  + V W++I+ 
Sbjct: 380 LDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCND-MDSSLKIFSSLRDANEVSWNTIVV 438

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           G+SQSG   EA+ +F  M+  ++    VT  ++L +C   + + H   +HC I K+  N 
Sbjct: 439 GFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNN 498

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           D  IGN+L++ Y+KCG I  + ++F  +  RD +SW  +ISGY  HG   +AL+LF  M 
Sbjct: 499 DTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMN 558

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
           +S VE + IT +A+LS C+  GLV    +LF+++  +  I  ++EHY C V LLG++G++
Sbjct: 559 KSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRL 618

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546
            DA + +  +P  PS  +  +L+S+C IH  + +    A +++E EP++   Y LLS + 
Sbjct: 619 NDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMY 678

Query: 547 SESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           + +G+      + + MR  G+ K  G S +E
Sbjct: 679 AAAGSLDQVALLRKSMRNIGVRKVPGLSWVE 709



 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 168/566 (29%), Positives = 269/566 (47%), Gaps = 41/566 (7%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIK----ACA------YAQTHQHFGLQLHCTALK 56
           Y   L   + EL      ++ AILPSV      ACA       A+     G  +H   ++
Sbjct: 34  YAAALQWLEDEL------TSLAILPSVPGVDSFACARQLQGCIARGDARGGRAVHGHVVR 87

Query: 57  SGSDA--DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSL 114
            G     D   +N L++MY K     SA +LFD MP R+ +S+ +++    Q G +  + 
Sbjct: 88  RGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAA 147

Query: 115 EMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDL 174
            +FR +   G  +   +L  ++ L   +    L   +H+     G  + + FV + L+D 
Sbjct: 148 ALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLG-HDHNAFVGSGLIDA 206

Query: 175 YSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTL 234
           YS C     A  VF  +V ++ V WTAM+S   ++   +    +F  M+  G KP    L
Sbjct: 207 YSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFAL 266

Query: 235 TIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTK 294
           T VL A   L  +  GK IHG A     D + H+  AL+ MY +C + +  AR+ FE   
Sbjct: 267 TSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGD-IKDARLAFEMIP 325

Query: 295 VKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG 354
             DV++ S +I  Y+QS    +A +LF R+    + PN  +L ++L +CT    L  G  
Sbjct: 326 YDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQ 385

Query: 355 VHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGY 414
           +H + +K G   D+ +GNALM+ Y+KC  + SS +IF+ +   + VSW T++ G+   G 
Sbjct: 386 IHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGL 445

Query: 415 GEEALQLFLEMQESGVEPDAITVLAILSAC------NHAGLVK---EAETLFNNVMKEKK 465
           GEEAL +F EMQ + +    +T  ++L AC       HAG +    E  T  N+ +    
Sbjct: 446 GEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNS 505

Query: 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525
           +          +D   K G I DA KV   + M+      ++++S   +HG+   A  L 
Sbjct: 506 L----------IDTYAKCGYIRDALKVFQHL-MERDIISWNAIISGYALHGQAADALELF 554

Query: 526 HQLIEAEPE-NAANYTLLSMVCSESG 550
            ++ ++  E N   +  L  VCS +G
Sbjct: 555 DRMNKSNVESNDITFVALLSVCSSTG 580


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 169/523 (32%), Positives = 259/523 (49%), Gaps = 81/523 (15%)

Query: 55  LKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSL 114
             S  D + V  N L+  Y +  + + A  LFD MP RD ISWN +I  + QNG    + 
Sbjct: 207 FDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEAR 266

Query: 115 EMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDL 174
            +F E+ +                          R + A   +     +S FV   +LD 
Sbjct: 267 RLFEELPI--------------------------RDVFAWTAM-----VSGFVQNGMLDE 295

Query: 175 YSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTL 234
                    A R+FE+M  +NEVSW AMI+G + SQ  +   +LF  M      P+R T 
Sbjct: 296 ---------ATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQM------PSRNTS 340

Query: 235 TIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTK 294
           +   +             + GYA C   D                      A+I+F+   
Sbjct: 341 SWNTM-------------VTGYAQCGNID---------------------QAKILFDEMP 366

Query: 295 VKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLG 354
            +D + W+++I GY+QSG   EA+ LF +M+ +    N   L   LSSC   + L  G  
Sbjct: 367 QRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQ 426

Query: 355 VHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGY 414
           +H  ++KAG       GNAL+ MY KCGSI  +  +F ++  +D VSW T+I+GY  HG+
Sbjct: 427 LHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGF 486

Query: 415 GEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYA 474
           G+EAL LF  M+ + ++PD +T++ +LSAC+H G V +    FN++ +   I    +HY 
Sbjct: 487 GKEALALFESMKMT-IKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYT 545

Query: 475 CYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPE 534
           C +DLLG++G++++A  ++ +MP  P      +L+ A RIHG  E+ E  A ++ E EP+
Sbjct: 546 CMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPD 605

Query: 535 NAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           N+  Y LLS + + SG W    E+   MR KG+ K  G+S +E
Sbjct: 606 NSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVE 648



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 119/498 (23%), Positives = 218/498 (43%), Gaps = 42/498 (8%)

Query: 60  DADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFRE 119
           D+D V  N  IS Y +  + ESA  +F+ M  R T+++N++I+ +  N  +  + ++F +
Sbjct: 57  DSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEK 116

Query: 120 MYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH 179
           M     +    +L+G +   +      L  Q+    +V  +  LS F     ++      
Sbjct: 117 MPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEE----- 171

Query: 180 HWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLL 239
               A ++F+QM+++NE+SW  ++S  + +   +    LF          +++   IV  
Sbjct: 172 ----ARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLF---------DSKMDWEIVSW 218

Query: 240 ACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVV 299
            C     +R  +     +          +S  +M         L  AR +FE   ++DV 
Sbjct: 219 NCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVF 278

Query: 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYI 359
            W++++ G+ Q+G L EA ++F  M     E N V+  A+++   +             I
Sbjct: 279 AWTAMVSGFVQNGMLDEATRIFEEM----PEKNEVSWNAMIAGYVQSQ----------QI 324

Query: 360 MKAGLNFD------VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHG 413
            KA   FD       S  N ++  Y++CG+I  +  +F+EM  RD +SW  +ISGY   G
Sbjct: 325 EKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSG 384

Query: 414 YGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY 473
             EEAL LF++M+  G   +   +   LS+C     ++  + L   ++K       I   
Sbjct: 385 QSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGN 444

Query: 474 ACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG-RLEVAEMLAHQLIEAE 532
           A    + GK G IE+A  V   +  K      +++++    HG   E   +     +  +
Sbjct: 445 ALLA-MYGKCGSIEEAFDVFEDITEKDIVS-WNTMIAGYARHGFGKEALALFESMKMTIK 502

Query: 533 PENAANYTLLSMVCSESG 550
           P++     +LS  CS +G
Sbjct: 503 PDDVTLVGVLS-ACSHTG 519



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 98/199 (49%), Gaps = 8/199 (4%)

Query: 8   EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN 67
           E+ LHL+ +     G+ + +A L   + +CA     +  G QLH   +K+G     +  N
Sbjct: 387 EEALHLFIKMKRDGGILNRSA-LACALSSCAEIAALE-LGKQLHGRLVKAGFQTGYIAGN 444

Query: 68  SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127
           +L++MY K    E A+ +F+++  +D +SWN++I  + ++GF   +L +F  M +    +
Sbjct: 445 ALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKM---TI 501

Query: 128 KAE--LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
           K +   L G++S CS  G ++ G +    +  +     +    T ++DL  +      AL
Sbjct: 502 KPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEAL 561

Query: 186 RVFEQMVI-RNEVSWTAMI 203
            + + M    +  +W A++
Sbjct: 562 NLMKSMPFYPDAATWGALL 580


>gi|19697432|gb|AAL93067.1|AC093180_14 hypothetical protein [Oryza sativa Japonica Group]
          Length = 1012

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 171/571 (29%), Positives = 294/571 (51%), Gaps = 4/571 (0%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           +E    L+++ L   G   N  +L +++K  A A         +H  A K G D +  + 
Sbjct: 143 FEAAAALFRR-LRWEGHEVNQFVLTTMLK-LAIAMDAAGLAGGVHSCAWKLGHDHNAFVG 200

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           + LI  Y+  S    A  +F+ +  +D + W ++++C+++N     +  +F +M + G  
Sbjct: 201 SGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCK 260

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALR 186
                L  ++     +  + LG+ IH   I   + +    V  ALLD+Y+KC     A  
Sbjct: 261 PNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLN-DTEPHVGGALLDMYAKCGDIKDARL 319

Query: 187 VFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD 246
            FE +   + +  + MIS    S   +   +LF  + R  V P   +L+ VL AC  +  
Sbjct: 320 AFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQ 379

Query: 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIR 306
           L  GK IH +A   G + D  +  ALM  Y +C + +  +  IF   +  + V W++I+ 
Sbjct: 380 LDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCND-MDSSLKIFSSLRDANEVSWNTIVV 438

Query: 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366
           G+SQSG   EA+ +F  M+  ++    VT  ++L +C   + + H   +HC I K+  N 
Sbjct: 439 GFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNN 498

Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ 426
           D  IGN+L++ Y+KCG I  + ++F  +  RD +SW  +ISGY  HG   +AL+LF  M 
Sbjct: 499 DTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMN 558

Query: 427 ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486
           +S VE + IT +A+LS C+  GLV    +LF+++  +  I  ++EHY C V LLG++G++
Sbjct: 559 KSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRL 618

Query: 487 EDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546
            DA + +  +P  PS  +  +L+S+C IH  + +    A +++E EP++   Y LLS + 
Sbjct: 619 NDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMY 678

Query: 547 SESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577
           + +G+      + + MR  G+ K  G S +E
Sbjct: 679 AAAGSLDQVALLRKSMRNIGVRKVPGLSWVE 709



 Score =  218 bits (555), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 164/548 (29%), Positives = 264/548 (48%), Gaps = 35/548 (6%)

Query: 25  SNTAILPSVIK----ACA------YAQTHQHFGLQLHCTALKSGSDA--DPVISNSLISM 72
           ++ AILPSV      ACA       A+     G  +H   ++ G     D   +N L++M
Sbjct: 46  TSLAILPSVPGVDSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNM 105

Query: 73  YAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELL 132
           Y K     SA +LFD MP R+ +S+ +++    Q G +  +  +FR +   G  +   +L
Sbjct: 106 YGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVL 165

Query: 133 AGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV 192
             ++ L   +    L   +H+     G  + + FV + L+D YS C     A  VF  +V
Sbjct: 166 TTMLKLAIAMDAAGLAGGVHSCAWKLGH-DHNAFVGSGLIDAYSLCSLVSDAEHVFNGIV 224

Query: 193 IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKA 252
            ++ V WTAM+S   ++   +    +F  M+  G KP    LT VL A   L  +  GK 
Sbjct: 225 RKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKG 284

Query: 253 IHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSG 312
           IHG A     D + H+  AL+ MY +C + +  AR+ FE     DV++ S +I  Y+QS 
Sbjct: 285 IHGCAIKTLNDTEPHVGGALLDMYAKCGD-IKDARLAFEMIPYDDVILLSFMISRYAQSN 343

Query: 313 DLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN 372
              +A +LF R+    + PN  +L ++L +CT    L  G  +H + +K G   D+ +GN
Sbjct: 344 QNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGN 403

Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP 432
           ALM+ Y+KC  + SS +IF+ +   + VSW T++ G+   G GEEAL +F EMQ + +  
Sbjct: 404 ALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPC 463

Query: 433 DAITVLAILSAC------NHAGLVK---EAETLFNNVMKEKKIALAIEHYACYVDLLGKS 483
             +T  ++L AC       HAG +    E  T  N+ +    +          +D   K 
Sbjct: 464 TQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSL----------IDTYAKC 513

Query: 484 GKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPE-NAANYTLL 542
           G I DA KV   + M+      ++++S   +HG+   A  L  ++ ++  E N   +  L
Sbjct: 514 GYIRDALKVFQHL-MERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVAL 572

Query: 543 SMVCSESG 550
             VCS +G
Sbjct: 573 LSVCSSTG 580


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 154/428 (35%), Positives = 252/428 (58%), Gaps = 6/428 (1%)

Query: 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRN 195
           I+ C +   L  GRQ+HA  +V   +   V+++T L+ LY +C     A  V + M  RN
Sbjct: 48  ITACVERQALGEGRQVHAH-MVKARYRPPVYLATRLIILYVRCGALDDARNVLDGMPERN 106

Query: 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHG 255
            VSWTAMISG   S  +   ++LF  M R G K    TL  VL +C   + ++  + +H 
Sbjct: 107 VVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQQVEQVHS 166

Query: 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315
                 F+    + ++L+ MY + +  +  AR +F+    +D V  ++II GY+Q G   
Sbjct: 167 LVVKTNFESHMFVGSSLLDMYGK-SGNIQEARKVFDMLPERDTVSCTAIISGYAQLGLDD 225

Query: 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375
           EA+ LF ++    ++ N VT   +L+S +  + L++G  VH  I++  L F + + N+L+
Sbjct: 226 EALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELPFFIVLQNSLI 285

Query: 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435
           +MYSKCG +  S ++F+ M  R  +SW  ++ GYG HG G+E +QLF  M E  V+PD++
Sbjct: 286 DMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLFRTMTEE-VKPDSV 344

Query: 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495
           T+LA+LS C+H GLV E   +F+ ++KE+   + I HY C +DLLG+SG+++ A  ++  
Sbjct: 345 TLLAVLSGCSHGGLVDEGLDIFDLIVKEQNAVIHIGHYGCVIDLLGRSGQLQKALDLIEH 404

Query: 496 MPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGA 555
           MP +P+  I  SL+ ACR+H  + V E++A +L++ EP NA NY +LS + + +G W   
Sbjct: 405 MPFEPTPAIWGSLLGACRVHINVSVGEVVAQKLLDMEPGNAGNYVILSNIYAAAGMW--- 461

Query: 556 EEVWRVMR 563
           ++V+RV +
Sbjct: 462 KDVFRVRK 469



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 124/443 (27%), Positives = 217/443 (48%), Gaps = 22/443 (4%)

Query: 32  SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPY 91
           + I AC   Q     G Q+H   +K+       ++  LI +Y +    + A  + D MP 
Sbjct: 46  AAITACVERQALGE-GRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDGMPE 104

Query: 92  RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQI 151
           R+ +SW ++I+ ++Q+G +  +LE+F  M   G       LA +++ C     ++   Q+
Sbjct: 105 RNVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQQVEQV 164

Query: 152 HALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQN 211
           H+LV V  +FE  +FV ++LLD+Y K  +   A +VF+ +  R+ VS TA+ISG      
Sbjct: 165 HSLV-VKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISGYAQLGL 223

Query: 212 YDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAA 271
            D  +DLFR +   G++   VT T +L + + L  L  GK +HG        F   L  +
Sbjct: 224 DDEALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELPFFIVLQNS 283

Query: 272 LMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP 331
           L+ MY +C + L+ +R +F+    +  + W++++ GY + G   E ++LF  M  E ++P
Sbjct: 284 LIDMYSKCGKLLY-SRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLFRTM-TEEVKP 341

Query: 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGN--ALMNMYSKCGSITSSHQ 389
           +SVTLLA+LS C+    +  GL +   I+K   N  + IG+   ++++  + G +  +  
Sbjct: 342 DSVTLLAVLSGCSHGGLVDEGLDIFDLIVKEQ-NAVIHIGHYGCVIDLLGRSGQLQKALD 400

Query: 390 IFNEMAARDFVS-WTTLISGYGFH---GYGEEALQLFLEMQESGVEPDAITVLAILSACN 445
           +   M      + W +L+     H     GE   Q  L+M     EP       ILS   
Sbjct: 401 LIEHMPFEPTPAIWGSLLGACRVHINVSVGEVVAQKLLDM-----EPGNAGNYVILSN-- 453

Query: 446 HAGLVKEAETLFNNVMKEKKIAL 468
               +  A  ++ +V + +K+ L
Sbjct: 454 ----IYAAAGMWKDVFRVRKLML 472



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 106/384 (27%), Positives = 173/384 (45%), Gaps = 55/384 (14%)

Query: 7   YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVIS 66
           + + L L+ + L  +G  +N   L +V+ +C   Q+ Q    Q+H   +K+  ++   + 
Sbjct: 123 HAEALELFIRMLR-AGCKANEFTLATVLTSCPVHQSIQQVE-QVHSLVVKTNFESHMFVG 180

Query: 67  NSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126
           +SL+ MY K    + A ++FD +P RDT+S  +II+ + Q G    +L++FR++Y  G  
Sbjct: 181 SSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISGYAQLGLDDEALDLFRQLYSSGMQ 240

Query: 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFV--STALLDLYSKCHHWLIA 184
                   +++  S +  L  G+Q+H L++     EL  F+    +L+D+YSKC   L +
Sbjct: 241 CNYVTFTTLLTSLSGLASLNYGKQVHGLILRK---ELPFFIVLQNSLIDMYSKCGKLLYS 297

Query: 185 LRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244
            RVF+ M  R+ +SW AM+ G          + LFR M  E VKP  VTL  VL  C+  
Sbjct: 298 RRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLFRTMTEE-VKPDSVTLLAVLSGCS-- 354

Query: 245 RDLRNGKAIHGYAYCCGFD-FDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
                    HG     G D FD                      I+ E+  V  +  +  
Sbjct: 355 ---------HGGLVDEGLDIFD---------------------LIVKEQNAVIHIGHYGC 384

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           +I    +SG L +A+ L   M     EP      ++L +C     +S G  V   ++   
Sbjct: 385 VIDLLGRSGQLQKALDLIEHMPF---EPTPAIWGSLLGACRVHINVSVGEVVAQKLL--- 438

Query: 364 LNFDVSIGNA-----LMNMYSKCG 382
              D+  GNA     L N+Y+  G
Sbjct: 439 ---DMEPGNAGNYVILSNIYAAAG 459



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 91/168 (54%), Gaps = 7/168 (4%)

Query: 338 AILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR 397
           A +++C  +  L  G  VH +++KA     V +   L+ +Y +CG++  +  + + M  R
Sbjct: 46  AAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDGMPER 105

Query: 398 DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLF 457
           + VSWT +ISGY   G   EAL+LF+ M  +G + +  T+  +L++C     +++ E + 
Sbjct: 106 NVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQQVEQVH 165

Query: 458 NNVMK---EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPST 502
           + V+K   E  + +     +  +D+ GKSG I++A KV   +P + + 
Sbjct: 166 SLVVKTNFESHMFVG----SSLLDMYGKSGNIQEARKVFDMLPERDTV 209


>gi|449439735|ref|XP_004137641.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
 gi|449514868|ref|XP_004164502.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 601

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 173/579 (29%), Positives = 297/579 (51%), Gaps = 10/579 (1%)

Query: 2   VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDA 61
           V+  F+ Q+L  Y    H SG++ N    P ++KACA   +    G  LH   +  G ++
Sbjct: 29  VNGGFFAQSLETYSFMRH-SGIHGNNFTFPLLLKACANLASIGD-GTMLHAHLIHVGFES 86

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D  +  SL+ MY+KFS   ++ Q+FDE   R  ISWNS+I  ++++     +L++FREM 
Sbjct: 87  DVFVQTSLVDMYSKFSNLRASRQVFDETSTRSVISWNSMIAAYSRSFRVNEALKLFREML 146

Query: 122 LCGFVLKAELLAGIISLCSQI--GELELGRQIHALVIVDGSFEL--SVFVSTALLDLYSK 177
             GF   +     ++S  +    G L  GR +H  +     F+L     V  +L+ +Y  
Sbjct: 147 GGGFEPNSSTFVSLLSGFADPTHGSLFQGRLLHGCLT---KFQLHDDTPVENSLVQMYVN 203

Query: 178 CHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIV 237
                 A  VF  +  +  +SWT M+ G + +       + F  M++  V   +     +
Sbjct: 204 FGQIDSACSVFYAISEKTVISWTIMLGGYLKAGAVAKVFETFSQMRQNNVVLDKFVFVDI 263

Query: 238 LLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKD 297
           + +C +L +L  G ++H      G  ++  +   L+ MY +C + L  AR +F+    K 
Sbjct: 264 ISSCIQLGNLFLGSSLHSLLLKTGLKYEDPIGCLLISMYSKCGDLL-SARAVFDLLSEKS 322

Query: 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHC 357
           +  W+S+I GY+ +G   EA+ LFS      + PN   L   +S+C     LS    +  
Sbjct: 323 IYSWTSMISGYANAGYPREALSLFSMATQNNVRPNGAMLATAISACADLGSLSMRREIEA 382

Query: 358 YIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEE 417
           +I + GL  D  +  +L+++Y K GSI  + ++FN M  RD  +W+++++GY  HG GE+
Sbjct: 383 FIQQDGLASDSQVSTSLIHLYCKFGSIEKAEKVFNSMIHRDLAAWSSMMNGYAVHGMGEK 442

Query: 418 ALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYV 477
            + LF EMQ SG++PD     +IL AC+H+GLV++    F N+  +  I   + HY C V
Sbjct: 443 TMNLFHEMQRSGIKPDGSVYASILLACSHSGLVEDGLEHFKNMQLDYGIVPTMVHYTCLV 502

Query: 478 DLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAA 537
           D+L ++G +E A   +  MP +  ++  +  +SACR +  +E+ E+    L+ + P N  
Sbjct: 503 DILSRAGHLELALNTIQEMPTQFQSQAWAPFLSACRTYCDVELGEVANRCLLSSNPRNPV 562

Query: 538 NYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
           N+ L++ + +  G W  A +V  ++  KGL K  G S++
Sbjct: 563 NHVLMANLYTSMGKWKEAAKVRSLIDDKGLVKEPGCSQL 601



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 130/463 (28%), Positives = 227/463 (49%), Gaps = 19/463 (4%)

Query: 97  WNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVI 156
           WN  I      GF+ +SLE +  M   G          ++  C+ +  +  G  +HA +I
Sbjct: 21  WNLTIRSSVNGGFFAQSLETYSFMRHSGIHGNNFTFPLLLKACANLASIGDGTMLHAHLI 80

Query: 157 VDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGI 216
             G FE  VFV T+L+D+YSK  +   + +VF++   R+ +SW +MI+    S   +  +
Sbjct: 81  HVG-FESDVFVQTSLVDMYSKFSNLRASRQVFDETSTRSVISWNSMIAAYSRSFRVNEAL 139

Query: 217 DLFRAMQREGVKPTRVTLTIVLLACAELR--DLRNGKAIHGYAYCCGFDFDHHLSAALMH 274
            LFR M   G +P   T   +L   A+     L  G+ +HG         D  +  +L+ 
Sbjct: 140 KLFREMLGGGFEPNSSTFVSLLSGFADPTHGSLFQGRLLHGCLTKFQLHDDTPVENSLVQ 199

Query: 275 MYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSV 334
           MY    + +  A  +F     K V+ W+ ++ GY ++G +++  + FS+MR   +  +  
Sbjct: 200 MYVNFGQ-IDSACSVFYAISEKTVISWTIMLGGYLKAGAVAKVFETFSQMRQNNVVLDKF 258

Query: 335 TLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEM 394
             + I+SSC +   L  G  +H  ++K GL ++  IG  L++MYSKCG + S+  +F+ +
Sbjct: 259 VFVDIISSCIQLGNLFLGSSLHSLLLKTGLKYEDPIGCLLISMYSKCGDLLSARAVFDLL 318

Query: 395 AARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG---LVK 451
           + +   SWT++ISGY   GY  EAL LF    ++ V P+   +   +SAC   G   + +
Sbjct: 319 SEKSIYSWTSMISGYANAGYPREALSLFSMATQNNVRPNGAMLATAISACADLGSLSMRR 378

Query: 452 EAETLF--NNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLV 509
           E E     + +  + +++ ++ H  C      K G IE A KV ++M +       SS++
Sbjct: 379 EIEAFIQQDGLASDSQVSTSLIHLYC------KFGSIEKAEKVFNSM-IHRDLAAWSSMM 431

Query: 510 SACRIHGRLEVAEMLAHQLIEA--EPENAANYTLLSMVCSESG 550
           +   +HG  E    L H++  +  +P+ +  Y  + + CS SG
Sbjct: 432 NGYAVHGMGEKTMNLFHEMQRSGIKPDGSV-YASILLACSHSG 473



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 83/148 (56%)

Query: 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGV 355
           K + +W+  IR     G  +++++ +S MR   I  N+ T   +L +C   + +  G  +
Sbjct: 16  KPLYLWNLTIRSSVNGGFFAQSLETYSFMRHSGIHGNNFTFPLLLKACANLASIGDGTML 75

Query: 356 HCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYG 415
           H +++  G   DV +  +L++MYSK  ++ +S Q+F+E + R  +SW ++I+ Y      
Sbjct: 76  HAHLIHVGFESDVFVQTSLVDMYSKFSNLRASRQVFDETSTRSVISWNSMIAAYSRSFRV 135

Query: 416 EEALQLFLEMQESGVEPDAITVLAILSA 443
            EAL+LF EM   G EP++ T +++LS 
Sbjct: 136 NEALKLFREMLGGGFEPNSSTFVSLLSG 163


>gi|302817750|ref|XP_002990550.1| hypothetical protein SELMODRAFT_327 [Selaginella moellendorffii]
 gi|300141718|gb|EFJ08427.1| hypothetical protein SELMODRAFT_327 [Selaginella moellendorffii]
          Length = 917

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 168/542 (30%), Positives = 297/542 (54%), Gaps = 13/542 (2%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           F ++ +HL+++ L   G+  +     S+I   A  Q  +     +    ++SG + D  +
Sbjct: 387 FCDEAVHLFRRML-AEGITPDKFTFISIIDGTARMQEAKILSELM----VESGVELDVFL 441

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
            ++LI+M++++     A  LFD+M  RD + W SII+ + Q+G    +L   R M L G 
Sbjct: 442 VSALINMHSRYGNVREARSLFDDMKDRDIVMWTSIISSYVQHGSSDDALGCTRLMRLEGL 501

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
           +     L   ++ C+ +  L  G+ IH+  I  G F  S  V  AL+++Y+KC     A 
Sbjct: 502 MGNDFTLVTALNACASLTALSEGKLIHSHAIERG-FAASPAVGNALINMYAKCGCLEEAD 560

Query: 186 RVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245
            VF Q   +N VSW  + +  +    +   + LF+ MQ EG+K  +V+   VL  C+   
Sbjct: 561 LVFHQ-CGKNLVSWNTIAAAYVQRDKWREALQLFQEMQLEGLKADKVSFVTVLNGCSSAS 619

Query: 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSII 305
           +   G  IH      G + DH +S AL++MY   +++L  A  IF R + +D+V W+++I
Sbjct: 620 E---GSKIHNILLETGMESDHIVSTALLNMYT-ASKSLDEASRIFSRMEFRDIVSWNAMI 675

Query: 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILS--SCTRQSFLSHGLGVHCYIMKAG 363
            G ++ G   EA+++F RM+LE + P+ ++ + +L+  S +  S L     V   I   G
Sbjct: 676 AGKAEHGLSREAIQMFQRMQLEGVAPDKISFVTVLNAFSGSSPSSLKQARLVEKLISDQG 735

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423
              D  +GNA+++M+ + G +  + + F  +  RD  SW  +++ +  HG  E+AL+LF 
Sbjct: 736 YETDTIVGNAIVSMFGRSGRLAEARRAFERIRERDAASWNVIVTAHAQHGEVEQALKLFR 795

Query: 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS 483
            MQ+    PD+IT++++LSAC+H GL++E    F ++ +E  IA + EHY C VDLL ++
Sbjct: 796 RMQQESSRPDSITLVSVLSACSHGGLIEEGYYHFTSMGREFGIAGSQEHYGCVVDLLARA 855

Query: 484 GKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLS 543
           G+++ A +++  MP+  S  +  +L+SAC++ G  + A+ +A +++E +P   A Y +LS
Sbjct: 856 GRLDQAEELLRKMPVPASYVLWMTLLSACKVQGDEKRAKRVAERVMELDPRRPAAYVVLS 915

Query: 544 MV 545
            V
Sbjct: 916 SV 917



 Score =  228 bits (582), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 142/483 (29%), Positives = 260/483 (53%), Gaps = 9/483 (1%)

Query: 62  DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121
           D ++ N+ I MY K    E A  +F  + +   +SWNS++  F ++G + ++ ++F+ M 
Sbjct: 36  DDLVQNATIHMYGKCGCVEDAVTVFQSLDHPSQVSWNSLLAAFARDGQFQQAFQIFQRMK 95

Query: 122 LCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181
           L G          ++  C+  G+L  G+ +H  V+  G  E +V V T+L+ +Y KC   
Sbjct: 96  LQGLAPDRITFVTVLDGCTATGDLSRGKLLHGFVLEAG-LERNVMVGTSLIKMYGKCGCV 154

Query: 182 LIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241
             A RVF+++ +++ VSWT+MI   +        ++LF  M+  GV P R+T    + AC
Sbjct: 155 EDARRVFDKLALQDVVSWTSMIMTYVQHDRCVEALELFHRMRPSGVLPNRITYATAISAC 214

Query: 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW 301
           A +  + +GK IH      GF+ D  +S A+++MY +C  +L  AR +FER    + V W
Sbjct: 215 AHVESMADGKLIHSQVLEDGFESDVVVSCAIVNMYGKCG-SLEDAREVFERMPHPNTVSW 273

Query: 302 SSIIRGYSQSGDLSEAMKLFSRMRLER-IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360
           ++I+   +Q G   EA+  F RM+L+    P+ VT + IL++C+  + L+ G  ++  I+
Sbjct: 274 NAIVAACTQHGCCVEALWYFQRMQLQGGSTPDKVTFITILNACSSPATLTFGELLYECIL 333

Query: 361 KAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQ 420
           + G +  + +GN +M MYS CG I ++   F+ M  RD +SW T+ISG+   G+ +EA+ 
Sbjct: 334 QCGYDTHLIVGNCIMTMYSSCGRIDNAAAFFSTMVERDAISWNTIISGHAQAGFCDEAVH 393

Query: 421 LFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLL 480
           LF  M   G+ PD  T ++I+   +    ++EA+ L + +M E  + L +   +  +++ 
Sbjct: 394 LFRRMLAEGITPDKFTFISII---DGTARMQEAKIL-SELMVESGVELDVFLVSALINMH 449

Query: 481 GKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYT 540
            + G + +A  +   M  +    + +S++S+   HG  + A +   +L+  E     ++T
Sbjct: 450 SRYGNVREARSLFDDMKDRDIV-MWTSIISSYVQHGSSDDA-LGCTRLMRLEGLMGNDFT 507

Query: 541 LLS 543
           L++
Sbjct: 508 LVT 510



 Score =  225 bits (573), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 134/440 (30%), Positives = 234/440 (53%), Gaps = 9/440 (2%)

Query: 9   QTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNS 68
           + L L+ + + PSG+  N     + I ACA+ ++    G  +H   L+ G ++D V+S +
Sbjct: 187 EALELFHR-MRPSGVLPNRITYATAISACAHVESMAD-GKLIHSQVLEDGFESDVVVSCA 244

Query: 69  LISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128
           +++MY K    E A ++F+ MP+ +T+SWN+I+   TQ+G  V +L  F+ M L G    
Sbjct: 245 IVNMYGKCGSLEDAREVFERMPHPNTVSWNAIVAACTQHGCCVEALWYFQRMQLQGGSTP 304

Query: 129 AEL-LAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187
            ++    I++ CS    L  G  ++  ++  G ++  + V   ++ +YS C     A   
Sbjct: 305 DKVTFITILNACSSPATLTFGELLYECILQCG-YDTHLIVGNCIMTMYSSCGRIDNAAAF 363

Query: 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247
           F  MV R+ +SW  +ISG   +   D  + LFR M  EG+ P + T   ++   A +++ 
Sbjct: 364 FSTMVERDAISWNTIISGHAQAGFCDEAVHLFRRMLAEGITPDKFTFISIIDGTARMQE- 422

Query: 248 RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRG 307
              K +       G + D  L +AL++M+      +  AR +F+  K +D+V+W+SII  
Sbjct: 423 --AKILSELMVESGVELDVFLVSALINMHSRYGN-VREARSLFDDMKDRDIVMWTSIISS 479

Query: 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367
           Y Q G   +A+     MRLE +  N  TL+  L++C   + LS G  +H + ++ G    
Sbjct: 480 YVQHGSSDDALGCTRLMRLEGLMGNDFTLVTALNACASLTALSEGKLIHSHAIERGFAAS 539

Query: 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427
            ++GNAL+NMY+KCG +  +  +F++   ++ VSW T+ + Y       EALQLF EMQ 
Sbjct: 540 PAVGNALINMYAKCGCLEEADLVFHQ-CGKNLVSWNTIAAAYVQRDKWREALQLFQEMQL 598

Query: 428 SGVEPDAITVLAILSACNHA 447
            G++ D ++ + +L+ C+ A
Sbjct: 599 EGLKADKVSFVTVLNGCSSA 618



 Score =  222 bits (565), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 155/533 (29%), Positives = 272/533 (51%), Gaps = 17/533 (3%)

Query: 22  GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81
           G   +     +++ AC+   T   FG  L+   L+ G D   ++ N +++MY+   + ++
Sbjct: 301 GSTPDKVTFITILNACSSPATLT-FGELLYECILQCGYDTHLIVGNCIMTMYSSCGRIDN 359

Query: 82  AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141
           A   F  M  RD ISWN+II+   Q GF   ++ +FR M   G          II   ++
Sbjct: 360 AAAFFSTMVERDAISWNTIISGHAQAGFCDEAVHLFRRMLAEGITPDKFTFISIIDGTAR 419

Query: 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTA 201
           + E     +I + ++V+   EL VF+ +AL++++S+  +   A  +F+ M  R+ V WT+
Sbjct: 420 MQEA----KILSELMVESGVELDVFLVSALINMHSRYGNVREARSLFDDMKDRDIVMWTS 475

Query: 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261
           +IS  +   + D  +   R M+ EG+     TL   L ACA L  L  GK IH +A   G
Sbjct: 476 IISSYVQHGSSDDALGCTRLMRLEGLMGNDFTLVTALNACASLTALSEGKLIHSHAIERG 535

Query: 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321
           F     +  AL++MY +C   L  A ++F +   K++V W++I   Y Q     EA++LF
Sbjct: 536 FAASPAVGNALINMYAKCG-CLEEADLVFHQCG-KNLVSWNTIAAAYVQRDKWREALQLF 593

Query: 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381
             M+LE ++ + V+ + +L+ C   S  S G  +H  +++ G+  D  +  AL+NMY+  
Sbjct: 594 QEMQLEGLKADKVSFVTVLNGC---SSASEGSKIHNILLETGMESDHIVSTALLNMYTAS 650

Query: 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441
            S+  + +IF+ M  RD VSW  +I+G   HG   EA+Q+F  MQ  GV PD I+ + +L
Sbjct: 651 KSLDEASRIFSRMEFRDIVSWNAMIAGKAEHGLSREAIQMFQRMQLEGVAPDKISFVTVL 710

Query: 442 SACNHAGL--VKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMK 499
           +A + +    +K+A  L   ++ ++            V + G+SG++ +A +    +  +
Sbjct: 711 NAFSGSSPSSLKQAR-LVEKLISDQGYETDTIVGNAIVSMFGRSGRLAEARRAFERIRER 769

Query: 500 PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV--CSESG 550
            +    + +V+A   HG +E A  L  ++ + E     + TL+S++  CS  G
Sbjct: 770 DAAS-WNVIVTAHAQHGEVEQALKLFRRM-QQESSRPDSITLVSVLSACSHGG 820



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 105/364 (28%), Positives = 186/364 (51%), Gaps = 6/364 (1%)

Query: 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194
           ++ LC++   +  GR +H+ V     F     V  A + +Y KC     A+ VF+ +   
Sbjct: 8   LLGLCAKKSAIAEGRFVHSRVEAS-EFRRDDLVQNATIHMYGKCGCVEDAVTVFQSLDHP 66

Query: 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIH 254
           ++VSW ++++       +     +F+ M+ +G+ P R+T   VL  C    DL  GK +H
Sbjct: 67  SQVSWNSLLAAFARDGQFQQAFQIFQRMKLQGLAPDRITFVTVLDGCTATGDLSRGKLLH 126

Query: 255 GYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314
           G+    G + +  +  +L+ MY +C   +  AR +F++  ++DVV W+S+I  Y Q    
Sbjct: 127 GFVLEAGLERNVMVGTSLIKMYGKCG-CVEDARRVFDKLALQDVVSWTSMIMTYVQHDRC 185

Query: 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374
            EA++LF RMR   + PN +T    +S+C     ++ G  +H  +++ G   DV +  A+
Sbjct: 186 VEALELFHRMRPSGVLPNRITYATAISACAHVESMADGKLIHSQVLEDGFESDVVVSCAI 245

Query: 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQ-ESGVEPD 433
           +NMY KCGS+  + ++F  M   + VSW  +++    HG   EAL  F  MQ + G  PD
Sbjct: 246 VNMYGKCGSLEDAREVFERMPHPNTVSWNAIVAACTQHGCCVEALWYFQRMQLQGGSTPD 305

Query: 434 AITVLAILSACNHAGLVKEAETLFNNVMK-EKKIALAIEHYACYVDLLGKSGKIEDACKV 492
            +T + IL+AC+    +   E L+  +++      L + +  C + +    G+I++A   
Sbjct: 306 KVTFITILNACSSPATLTFGELLYECILQCGYDTHLIVGN--CIMTMYSSCGRIDNAAAF 363

Query: 493 VSTM 496
            STM
Sbjct: 364 FSTM 367



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 90/286 (31%), Positives = 159/286 (55%), Gaps = 3/286 (1%)

Query: 231 RVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIF 290
           R T   +L  CA+   +  G+ +H       F  D  +  A +HMY +C   +  A  +F
Sbjct: 2   RGTFLALLGLCAKKSAIAEGRFVHSRVEASEFRRDDLVQNATIHMYGKCG-CVEDAVTVF 60

Query: 291 ERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLS 350
           +       V W+S++  +++ G   +A ++F RM+L+ + P+ +T + +L  CT    LS
Sbjct: 61  QSLDHPSQVSWNSLLAAFARDGQFQQAFQIFQRMKLQGLAPDRITFVTVLDGCTATGDLS 120

Query: 351 HGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYG 410
            G  +H ++++AGL  +V +G +L+ MY KCG +  + ++F+++A +D VSWT++I  Y 
Sbjct: 121 RGKLLHGFVLEAGLERNVMVGTSLIKMYGKCGCVEDARRVFDKLALQDVVSWTSMIMTYV 180

Query: 411 FHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAI 470
            H    EAL+LF  M+ SGV P+ IT    +SAC H   + + + + + V+++   +  +
Sbjct: 181 QHDRCVEALELFHRMRPSGVLPNRITYATAISACAHVESMADGKLIHSQVLEDGFESDVV 240

Query: 471 EHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHG 516
              A  V++ GK G +EDA +V   MP  P+T   +++V+AC  HG
Sbjct: 241 VSCA-IVNMYGKCGSLEDAREVFERMP-HPNTVSWNAIVAACTQHG 284


>gi|115484979|ref|NP_001067633.1| Os11g0256100 [Oryza sativa Japonica Group]
 gi|62734753|gb|AAX96862.1| Similar to selenium-binding protein [Oryza sativa Japonica Group]
 gi|77549625|gb|ABA92422.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|113644855|dbj|BAF27996.1| Os11g0256100 [Oryza sativa Japonica Group]
 gi|125597201|gb|EAZ36981.1| hypothetical protein OsJ_21321 [Oryza sativa Japonica Group]
          Length = 582

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 178/535 (33%), Positives = 288/535 (53%), Gaps = 15/535 (2%)

Query: 50  LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109
           +H  A+  G  A+P  + SLI+  A  +    A ++FD  P RD   WN+++     +  
Sbjct: 44  IHARAVVLGISANPAFATSLITAVAP-ACLAYARRVFDAAPSRDAYMWNTLLRAHAHSRA 102

Query: 110 YVR-SLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSV--F 166
           + R +L ++  M   G          ++  C+      LGR  H   +    F L+   F
Sbjct: 103 HARDALALYARMRAAGVAPDHYTYPIVLPACAAARAPRLGRAAHGDAV---RFALARDGF 159

Query: 167 VSTALLDLYSKCHHWLIALRVF-EQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
           VS+AL+ +YS+      A RVF E+   R  VSWTAM++G   +  +   + LF  M   
Sbjct: 160 VSSALISMYSQEGEVRDAERVFAERDDARTVVSWTAMVAGYAQNCFFGEAVTLFSDMVAA 219

Query: 226 GVKPTRVTLTIVLLACAELRD-LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284
           GV P  +TL I  L C   ++ L  G+ +HG+    GFD +  +  AL+ MY  C  A  
Sbjct: 220 GVLPNEITL-ISFLPCLRGQEWLPVGEMVHGFVVKLGFDANVPMVNALITMYGRCGSA-- 276

Query: 285 P-ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC 343
           P AR++F     + +V W++++  Y Q GD  +A+K F RM  E++  + VTL+++LS+C
Sbjct: 277 PVARVLFNGMSSRTLVSWNTMVAMYEQHGDGVQAIKFFRRMLTEKVGFDCVTLVSVLSAC 336

Query: 344 TRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR--DFVS 401
            R   L  G  VH      GL+ D  IGN L++MY+KCG I  + ++F+    R    VS
Sbjct: 337 ARSGALGTGKWVHELARSHGLDTDARIGNVLVDMYAKCGEIAYAKEVFHSHGLRGHSVVS 396

Query: 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVM 461
           W+ +I+ Y  HG  EEAL+LF  M+  GV P++ T  A+L AC H+GLV E    FN++ 
Sbjct: 397 WSAMINAYANHGEAEEALKLFSLMRNEGVRPNSFTFTAVLMACCHSGLVDEGLKHFNSIA 456

Query: 462 KEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVA 521
            + +++  +EHYAC VD+LG++G++ +A  ++  MP++P   +  + +  CR+HG +E+A
Sbjct: 457 TDYQMSPTLEHYACMVDMLGRAGRLVEAYGIIRGMPIRPDKCVWGAFLGGCRLHGMVELA 516

Query: 522 EMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576
           E +A +L ++   +   Y L++ +  E+G    AE +  VM+   L K+ G S +
Sbjct: 517 EYVAKELFDSGSNDVTFYVLMANMYFEAGMLEDAERIRGVMKEMELKKTAGHSLV 571



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 123/432 (28%), Positives = 201/432 (46%), Gaps = 11/432 (2%)

Query: 47  GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEM-PYRDTISWNSIINCFT 105
           G   H  A++     D  +S++LISMY++  +   A ++F E    R  +SW +++  + 
Sbjct: 142 GRAAHGDAVRFALARDGFVSSALISMYSQEGEVRDAERVFAERDDARTVVSWTAMVAGYA 201

Query: 106 QNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSV 165
           QN F+  ++ +F +M   G +     L   +        L +G  +H  V+  G F+ +V
Sbjct: 202 QNCFFGEAVTLFSDMVAAGVLPNEITLISFLPCLRGQEWLPVGEMVHGFVVKLG-FDANV 260

Query: 166 FVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225
            +  AL+ +Y +C    +A  +F  M  R  VSW  M++      +    I  FR M  E
Sbjct: 261 PMVNALITMYGRCGSAPVARVLFNGMSSRTLVSWNTMVAMYEQHGDGVQAIKFFRRMLTE 320

Query: 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285
            V    VTL  VL ACA    L  GK +H  A   G D D  +   L+ MY +C E  + 
Sbjct: 321 KVGFDCVTLVSVLSACARSGALGTGKWVHELARSHGLDTDARIGNVLVDMYAKCGEIAY- 379

Query: 286 ARIIFERTKVK--DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSC 343
           A+ +F    ++   VV WS++I  Y+  G+  EA+KLFS MR E + PNS T  A+L +C
Sbjct: 380 AKEVFHSHGLRGHSVVSWSAMINAYANHGEAEEALKLFSLMRNEGVRPNSFTFTAVLMAC 439

Query: 344 TRQSFLSHGLGVHCYIMKAGLNFDVSIGN--ALMNMYSKCGSITSSHQIFNEMAAR-DFV 400
                +  GL  H   +        ++ +   +++M  + G +  ++ I   M  R D  
Sbjct: 440 CHSGLVDEGLK-HFNSIATDYQMSPTLEHYACMVDMLGRAGRLVEAYGIIRGMPIRPDKC 498

Query: 401 SWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNV 460
            W   + G   HG  E A  +  E+ +SG       VL + +    AG++++AE +   V
Sbjct: 499 VWGAFLGGCRLHGMVELAEYVAKELFDSGSNDVTFYVL-MANMYFEAGMLEDAERI-RGV 556

Query: 461 MKEKKIALAIEH 472
           MKE ++     H
Sbjct: 557 MKEMELKKTAGH 568



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 98/391 (25%), Positives = 164/391 (41%), Gaps = 40/391 (10%)

Query: 6   FYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVI 65
           F+ + + L+  ++  +G+  N   L S +  C   Q     G  +H   +K G DA+  +
Sbjct: 205 FFGEAVTLF-SDMVAAGVLPNEITLISFLP-CLRGQEWLPVGEMVHGFVVKLGFDANVPM 262

Query: 66  SNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125
            N+LI+MY +      A  LF+ M  R  +SWN+++  + Q+G  V++++ FR M     
Sbjct: 263 VNALITMYGRCGSAPVARVLFNGMSSRTLVSWNTMVAMYEQHGDGVQAIKFFRRMLTEKV 322

Query: 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185
                 L  ++S C++ G L  G+ +H L    G  +    +   L+D+Y+KC     A 
Sbjct: 323 GFDCVTLVSVLSACARSGALGTGKWVHELARSHG-LDTDARIGNVLVDMYAKCGEIAYAK 381

Query: 186 RVFEQMVIRNE--VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243
            VF    +R    VSW+AMI+   +    +  + LF  M+ EGV+P   T T VL+AC  
Sbjct: 382 EVFHSHGLRGHSVVSWSAMINAYANHGEAEEALKLFSLMRNEGVRPNSFTFTAVLMACCH 441

Query: 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSS 303
                +G    G  +      D+ +S  L H  C                          
Sbjct: 442 -----SGLVDEGLKHFNSIATDYQMSPTLEHYAC-------------------------- 470

Query: 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363
           ++    ++G L EA  +   M    I P+     A L  C     +     V   +  +G
Sbjct: 471 MVDMLGRAGRLVEAYGIIRGM---PIRPDKCVWGAFLGGCRLHGMVELAEYVAKELFDSG 527

Query: 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEM 394
            N DV+    + NMY + G +  + +I   M
Sbjct: 528 SN-DVTFYVLMANMYFEAGMLEDAERIRGVM 557


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.323    0.135    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,544,935,413
Number of Sequences: 23463169
Number of extensions: 329791147
Number of successful extensions: 929715
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 9009
Number of HSP's successfully gapped in prelim test: 2342
Number of HSP's that attempted gapping in prelim test: 736517
Number of HSP's gapped (non-prelim): 63721
length of query: 580
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 432
effective length of database: 8,886,646,355
effective search space: 3839031225360
effective search space used: 3839031225360
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 80 (35.4 bits)