BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041384
(580 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SFW|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Brevibacillus Agri Nchu1002
pdb|3SFW|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Brevibacillus Agri Nchu1002
Length = 461
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468
YGFH +A LE ES V + IT L + A + L+ + ETLF +++ K++
Sbjct: 120 YGFHLMVSDANDHVLEELESVVNNEGITSLXVFMAYKNV-LMADDETLFKTLIRAKELGA 178
Query: 469 AIEHYACYVDLL 480
++ +A D+L
Sbjct: 179 LVQVHAENGDVL 190
>pdb|4GRS|A Chain A, Crystal Structure Of A Chimeric Dah7ps
pdb|4GRS|B Chain B, Crystal Structure Of A Chimeric Dah7ps
pdb|4GRS|C Chain C, Crystal Structure Of A Chimeric Dah7ps
pdb|4GRS|D Chain D, Crystal Structure Of A Chimeric Dah7ps
Length = 333
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 18/95 (18%)
Query: 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS-----------WTTLISGYGFHGYG 415
DV IGN + + SI S QI M +F++ + S Y F GYG
Sbjct: 87 DVKIGNGYFTIIAGPCSIESRDQI---MKVAEFLAEVGIKVLRGGAFKPRTSPYSFQGYG 143
Query: 416 EEALQLFLEMQESGVEPDAITVLAILSACNHAGLV 450
E+AL+ M+E+ E +TV ++ H LV
Sbjct: 144 EKALRW---MREAADEYGLVTVTEVMD-TRHVELV 174
>pdb|1YNY|A Chain A, Molecular Structure Of D-Hydantoinase From A Bacillus Sp.
Ar9: Evidence For Mercury Inhibition
pdb|1YNY|B Chain B, Molecular Structure Of D-Hydantoinase From A Bacillus Sp.
Ar9: Evidence For Mercury Inhibition
Length = 461
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468
YGFH EA LE ES + + IT L + A + + ETLF ++K K++
Sbjct: 120 YGFHLMIAEANDQVLEELESVISSEGITSLKVFMAYKNV-FQADDETLFKTLVKAKELGA 178
Query: 469 AIEHYACYVDLL 480
++ +A D+L
Sbjct: 179 LVQVHAENGDVL 190
>pdb|4AV2|M Chain M, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|N Chain N, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|O Chain O, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|P Chain P, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|Q Chain Q, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|R Chain R, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|S Chain S, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|T Chain T, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|U Chain U, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|V Chain V, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|W Chain W, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|X Chain X, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis
Length = 181
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 8/92 (8%)
Query: 321 FSRMRLERIEPNSVTLLAILSSCTRQSF--------LSHGLGVHCYIMKAGLNFDVSIGN 372
F RM ++ N+ I + + S L G V +I G + V +GN
Sbjct: 65 FRRMETDKKGENAPDTKRIKETLEKFSLENMRYVGILKSGQKVSGFIEAEGYVYTVGVGN 124
Query: 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
L Y + SIT + NE+ +W +
Sbjct: 125 YLGQNYGRIESITDDSIVLNELIEDSTGNWVS 156
>pdb|3KAJ|A Chain A, Apoenzyme Structure Of Homoglutathione Synthetase From
Glycine Max In Open Conformation
pdb|3KAJ|B Chain B, Apoenzyme Structure Of Homoglutathione Synthetase From
Glycine Max In Open Conformation
pdb|3KAK|A Chain A, Structure Of Homoglutathione Synthetase From Glycine Max
In Open Conformation With Gamma-Glutamyl-Cysteine Bound.
pdb|3KAK|B Chain B, Structure Of Homoglutathione Synthetase From Glycine Max
In Open Conformation With Gamma-Glutamyl-Cysteine Bound.
pdb|3KAL|A Chain A, Structure Of Homoglutathione Synthetase From Glycine Max
In Closed Conformation With Homoglutathione, Adp, A
Sulfate Ion, And Three Magnesium Ions Bound
pdb|3KAL|B Chain B, Structure Of Homoglutathione Synthetase From Glycine Max
In Closed Conformation With Homoglutathione, Adp, A
Sulfate Ion, And Three Magnesium Ions Bound
Length = 499
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 408 GYGFHGYGEEALQLFLEMQESGVEPDAITVL--AILSACNHAGLVKEAETLFNNVMKEKK 465
G G + YG+E + L++QE+G + DA +L I A + A LV++ +V+ E
Sbjct: 393 GGGNNIYGDELRETLLKLQEAGSQEDAAYILMQRIFPATSPAILVRDGNWDTGHVISEAG 452
Query: 466 I 466
I
Sbjct: 453 I 453
>pdb|1XFU|A Chain A, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|B Chain B, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|C Chain C, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|D Chain D, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|E Chain E, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|F Chain F, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
Length = 747
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 387 SHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH 446
H+ E+ A D + + GF E +++ GVE D I VL A
Sbjct: 199 DHRTVLELYAPDMFEYMNKLEKGGFEKISES-------LKKEGVEKDRIDVLKGEKALKA 251
Query: 447 AGLVKEAETLFNNVMKE 463
+GLV E F + +E
Sbjct: 252 SGLVPEHADAFKKIARE 268
>pdb|1XFV|A Chain A, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|B Chain B, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|C Chain C, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|D Chain D, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|E Chain E, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|F Chain F, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFW|A Chain A, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|B Chain B, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|C Chain C, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|D Chain D, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|E Chain E, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|F Chain F, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFX|A Chain A, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|B Chain B, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|C Chain C, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|D Chain D, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|E Chain E, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|F Chain F, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFY|A Chain A, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|B Chain B, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|C Chain C, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|D Chain D, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|E Chain E, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|F Chain F, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFZ|A Chain A, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|B Chain B, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|C Chain C, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|D Chain D, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|E Chain E, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|F Chain F, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1Y0V|A Chain A, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|B Chain B, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|C Chain C, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|D Chain D, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|E Chain E, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|F Chain F, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
Length = 777
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 387 SHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH 446
H+ E+ A D + + GF E +++ GVE D I VL A
Sbjct: 229 DHRTVLELYAPDMFEYMNKLEKGGFEKISES-------LKKEGVEKDRIDVLKGEKALKA 281
Query: 447 AGLVKEAETLFNNVMKE 463
+GLV E F + +E
Sbjct: 282 SGLVPEHADAFKKIARE 298
>pdb|2IVW|A Chain A, The Solution Structure Of A Domain From The Neisseria
Meningitidis Pilp Pilot Protein
Length = 113
Score = 29.3 bits (64), Expect = 6.8, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 24/56 (42%)
Query: 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT 404
L G V +I G + V +GN L Y + SIT + NE+ +W +
Sbjct: 33 LKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIVLNELIEDSTGNWVS 88
>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1GIJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|2DS1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
Length = 298
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEH 472
++ L+ + GV AI +++L NH +VK L + + E K+ L EH
Sbjct: 34 KIRLDTETEGVPSTAIREISLLKELNHPNIVK----LLDVIHTENKLYLVFEH 82
>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
Length = 302
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEH 472
++ L+ + GV AI +++L NH +VK L + + E K+ L EH
Sbjct: 38 KIRLDTETEGVPSTAIREISLLKELNHPNIVK----LLDVIHTENKLYLVFEH 86
>pdb|3HGQ|A Chain A, Structural And Functional Studies Of The Yeast Class Ii
Hda1 Hdac Complex
pdb|3HGQ|B Chain B, Structural And Functional Studies Of The Yeast Class Ii
Hda1 Hdac Complex
pdb|3HGQ|C Chain C, Structural And Functional Studies Of The Yeast Class Ii
Hda1 Hdac Complex
pdb|3HGQ|D Chain D, Structural And Functional Studies Of The Yeast Class Ii
Hda1 Hdac Complex
Length = 328
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILS--SCTRQSFLSHGLGVHCYIMKAGLNFD 367
++ DL EA+ L +++ ++R + +S+ A + SCT F S G+ Y +K+ FD
Sbjct: 136 RTXDLLEALLLGNKVHIKRYDGHSIKSAAAANDFSCTVHLFSSEGINFTKYPIKSKARFD 195
Query: 368 VSI 370
I
Sbjct: 196 XLI 198
>pdb|3HGT|A Chain A, Structural And Functional Studies Of The Yeast Class Ii
Hda1 Hdac Complex
pdb|3HGT|B Chain B, Structural And Functional Studies Of The Yeast Class Ii
Hda1 Hdac Complex
Length = 328
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILS--SCTRQSFLSHGLGVHCYIMKAGLNFD 367
++ DL EA+ L +++ ++R + +S+ A + SCT F S G+ Y +K+ FD
Sbjct: 136 RTMDLLEALLLGNKVHIKRYDGHSIKSAAAANDFSCTVHLFSSEGINFTKYPIKSKARFD 195
Query: 368 VSI 370
+ I
Sbjct: 196 MLI 198
>pdb|1EG7|A Chain A, The Crystal Structure Of Formyltetrahydrofolate Synthetase
From Moorella Thermoacetica
pdb|1EG7|B Chain B, The Crystal Structure Of Formyltetrahydrofolate Synthetase
From Moorella Thermoacetica
Length = 557
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 86/217 (39%), Gaps = 20/217 (9%)
Query: 329 IEPNSVTLLAILSSCTRQ-SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387
I+P ++T ++ R + GLG + FD+S+ + +M C + S
Sbjct: 159 IDPRTITWRRVIDLNERALRNIVIGLGGKANGVPRETGFDISVASEVM----ACLCLASD 214
Query: 388 HQIFNEMAARDFVSWT---TLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444
E +R V +T ++ G AL + + ++P+ + L A
Sbjct: 215 LMDLKERFSRKVVGYTYDGKPVTAGDLEAQGSMAL-----LMKDAIKPNLVQTLENTPAF 269
Query: 445 NHAGLVKEAETLFNNVMKEK---KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPS 501
H G N+++ K K+A + A + LG + C+ KP
Sbjct: 270 IHGGPFANIAHGCNSIIATKTALKLADYVVTEAGFGADLGAEKFYDVKCRYAG---FKPD 326
Query: 502 TRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAAN 538
++ + V A ++HG + ++ LA + +EA E AN
Sbjct: 327 ATVIVATVRALKMHGGVPKSD-LATENLEALREGFAN 362
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,517,919
Number of Sequences: 62578
Number of extensions: 631546
Number of successful extensions: 1356
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1354
Number of HSP's gapped (non-prelim): 16
length of query: 580
length of database: 14,973,337
effective HSP length: 104
effective length of query: 476
effective length of database: 8,465,225
effective search space: 4029447100
effective search space used: 4029447100
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)